BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000454
(1491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/476 (22%), Positives = 184/476 (38%), Gaps = 84/476 (17%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXX 293
Q ++ + GH ++V+ F G+ + + SDD+ VK+W+ L + GH +
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 106
Query: 294 XXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353
D +++W +G + L GH+++V +AFSP ++ S+SDD T
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA---SASDDKT 162
Query: 354 CRIWDARYSQ----------------FSP-RIYIPRPSD----AVAGRNMAPSSSAGPQS 392
++W+ R Q FSP I SD + RN + S
Sbjct: 163 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 221
Query: 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF- 451
+ AF+ +G + S D ++WN + + L+GH + VN V F
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWN----------RNGQLLQTLTGHSSSVNGVAFR 271
Query: 452 -SGCAVASRFSLADSSKEDSTPKFKNS---------------W---FCHD--NIVTCSRD 490
G +A S+ +D T K N W F D I + S D
Sbjct: 272 PDGQTIA-------SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 491 GSAIIWIPRSRRSHP----KAARWTQAYH---LKVXXXXXXXXXXXXXXXXXILPTPRG- 542
+ +W + ++ W A+ + +L T G
Sbjct: 325 KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 384
Query: 543 ---VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 599
V + +S D + + +A D + +WN +G L+ +LTGH+ S + + P + IA
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443
Query: 600 SAGYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653
++ D KT+ +W G ++ + FSPDG +I + D + + N
Sbjct: 444 AS--DDKTV--KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/427 (21%), Positives = 166/427 (38%), Gaps = 76/427 (17%)
Query: 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 297
R+ H ++V F G+ + + SDD+ VK+W+ L + GH +
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 298 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357
D +++W +G + L GH+++V +AFSP ++ S+SDD T ++W
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA---SASDDKTVKLW 125
Query: 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 417
+ RN + S ++ AF+ +G + S D +
Sbjct: 126 N---------------------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDSTPKFK 475
+WN + + L+GH + V V FS G +A S+ +D T K
Sbjct: 165 LWN----------RNGQLLQTLTGHSSSVWGVAFSPDGQTIA-------SASDDKTVKLW 207
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH---LKVXXXXXXXXXXXXXX 532
N R+G + ++ H + R A+ +
Sbjct: 208 N------------RNGQLL----QTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNR 250
Query: 533 XXXILPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
+L T G VN + + D + + +A D + +WN +G L+ +LTGH+ S + +
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 309
Query: 589 DVHPFNPRIAMSAGYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDDV 646
P IA ++ D KT+ +W G ++ + FSPDG +I + D
Sbjct: 310 AFSPDGQTIASAS--DDKTV--KLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD 365
Query: 647 GQLYILN 653
+ + N
Sbjct: 366 KTVKLWN 372
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 45/245 (18%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXX 293
Q+++ + GH ++V+ F G+ + + SDD+ VK+W+ L + GH +
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 393
Query: 294 XXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353
D +++W +G + L GH+++V +AFSP ++ S+SDD T
Sbjct: 394 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIA---SASDDKT 449
Query: 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413
++W+ RN + S + AF+ +G + S D
Sbjct: 450 VKLWN---------------------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488
Query: 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDST 471
++WN + + L+GH + V V FS G +A S+ +D T
Sbjct: 489 KTVKLWN----------RNGQLLQTLTGHSSSVRGVAFSPDGQTIA-------SASDDKT 531
Query: 472 PKFKN 476
K N
Sbjct: 532 VKLWN 536
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 25/207 (12%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXX 293
Q ++ + GH ++V F G+ + + SDD+ VK+W+ L + GH +
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 434
Query: 294 XXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353
D +++W +G + L GH+++V +AFSP ++ S+SDD T
Sbjct: 435 SPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA---SASDDKT 490
Query: 354 CRIWD---------------ARYSQFSP-RIYIPRPSD----AVAGRNMAPSSSAGPQSH 393
++W+ R FSP I SD + RN + S
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 550
Query: 394 QIFCCAFNANGTVFVTGSSDTLARVWN 420
++ AF+ +G + SSD ++WN
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G+ + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN 238
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D + +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 224 AKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 283
+KP+ + + + GH AV F +G ++ + S D+L+KIW + G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 284 HEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343
H+ I+D D +++W + G + L+GH+ V F+P+ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI- 125
Query: 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403
+S S D + RIWD + +P SD V+ + FN +
Sbjct: 126 --VSGSFDESVRIWDVKTGMCLKT--LPAHSDPVSAVH------------------FNRD 163
Query: 404 GTVFVTGSSDTLARVWNA----CKPNTDDSDQP 432
G++ V+ S D L R+W+ C D D P
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 128
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G+ ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 58/273 (21%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 69
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
S A++++ + V+ S D ++W+ + L GH
Sbjct: 70 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 109
Query: 443 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 496
N V N+ S V+ F + + T + H + V+ +RDGS I+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV- 168
Query: 497 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 555
S+ R W A I V+ + +S + +++
Sbjct: 169 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
LAA +D + +W+ + G + + TGH Y +
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D +V IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 37.7 bits (86), Expect = 0.045, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G+ + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D + +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 224 AKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 283
+KP+ + + + GH AV F +G ++ + S D+L+KIW + G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 284 HEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343
H+ I+D D +++W + G + L+GH+ V F+P+ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI- 125
Query: 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403
+S S D + RIWD + +P SD V+ + FN +
Sbjct: 126 --VSGSFDESVRIWDVKTGMCLKT--LPAHSDPVSAVH------------------FNRD 163
Query: 404 GTVFVTGSSDTLARVWNA----CKPNTDDSDQP 432
G++ V+ S D L R+W+ C D D P
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 128
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G+ ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 58/273 (21%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 69
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
S A++++ + V+ S D ++W+ + L GH
Sbjct: 70 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 109
Query: 443 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 496
N V N+ S V+ F + + T + H + V+ +RDGS I+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV- 168
Query: 497 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 555
S+ R W A I V+ + +S + +++
Sbjct: 169 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
LAA +D + +W+ + G + + TGH Y +
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D +V IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 38.9 bits (89), Expect = 0.023, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 140
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 141 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 180
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 181 TASGQCLKTLIDDDNP 196
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR--IAM 599
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + FNP+ + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIV 126
Query: 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659
S +D +WD+ G ++ + F+ DG+ I+ S G I +T G+
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 660 QK 661
K
Sbjct: 187 LK 188
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 58/273 (21%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
L GHT AV+++ FSP L SSS D +IW A +F I +G +
Sbjct: 22 LAGHTKAVSSVKFSPNG---EWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 69
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
S A++++ + V+ S D ++W+ + L GH
Sbjct: 70 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 109
Query: 443 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 496
N V N+ S V+ F + + T K + H + V+ +RDGS I+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV- 168
Query: 497 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 555
S+ R W A I V+ + +S + +++
Sbjct: 169 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
LAA +D + +W+ + G + + TGH Y +
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 37.0 bits (84), Expect = 0.084, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
++ +W L + L+GHT V + A P
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ S D+L+KIW + GH+ I+D
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 140
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 141 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 180
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 181 TASGQCLKTLIDDDNP 196
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR--IAM 599
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + FNP+ + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIV 126
Query: 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659
S +D +WD+ G ++ + F+ DG+ I+ S G I +T G+
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 660 QK 661
K
Sbjct: 187 LK 188
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 58/273 (21%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
L GHT AV+++ FSP L +SS D +IW A +F I +G +
Sbjct: 22 LAGHTKAVSSVKFSPNG---EWLAASSADKLIKIWGAYDGKFEKTI---------SGHKL 69
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
S A++++ + V+ S D ++W+ + L GH
Sbjct: 70 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 109
Query: 443 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 496
N V N+ S V+ F + + T K + H + V+ +RDGS I+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV- 168
Query: 497 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 555
S+ R W A I V+ + +S + +++
Sbjct: 169 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
LAA +D + +W+ + G + + TGH Y +
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 140
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 141 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 180
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 181 TASGQCLKTLIDDDNP 196
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/283 (20%), Positives = 104/283 (36%), Gaps = 86/283 (30%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
D +I++W DG + GH ++ +A+S L+S+SDD T +IWD
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKIWDVS----- 98
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
+G+ + + S+ +FCC FN + V+GS D R+W+
Sbjct: 99 ------------SGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV---- 139
Query: 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485
+ + L H + V+ V F +++ S IV
Sbjct: 140 -----KTGKCLKTLPAHSDPVSAVHF--------------NRDGSL------------IV 168
Query: 486 TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNM 545
+ S DG IW S + LK V+
Sbjct: 169 SSSYDGLCRIWDTASGQC------------LKTLIDDDNPP----------------VSF 200
Query: 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
+ +S + +++LAA +D + +W+ + G + + TGH Y +
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR--IAM 599
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + FNP+ + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIV 126
Query: 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659
S +D +WD+ G ++ + F+ DG+ I+ S G I +T G+
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 660 QK 661
K
Sbjct: 187 LK 188
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 139 V---------KTGKCLKTLPAHSDPVSAVHFN 161
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 171
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 133
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 134 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 173
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 174 TASGQCLKTLIDDDNP 189
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR--IAM 599
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + FNP+ + +
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIV 119
Query: 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659
S +D +WD+ G ++ + F+ DG+ I+ S G I +T G+
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 660 QK 661
K
Sbjct: 180 LK 181
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 104/273 (38%), Gaps = 58/273 (21%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 15 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 62
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
S A++++ + V+ S D ++W+ + L GH
Sbjct: 63 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 102
Query: 443 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 496
N V N+ S V+ F + + T K + H + V+ +RDGS I+
Sbjct: 103 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV- 161
Query: 497 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 555
S+ R W A I V+ + +S + +++
Sbjct: 162 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 203
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
LAA +D + +W+ + G + + TGH Y +
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 256 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 306
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 246 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 301
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 174
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 175 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 136
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 137 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 176
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 177 TASGQCLKTLIDDDNP 192
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR--IAM 599
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + FNP+ + +
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIV 122
Query: 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659
S +D +WD+ G ++ + F+ DG+ I+ S G I +T G+
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 660 QK 661
K
Sbjct: 183 LK 184
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 104/273 (38%), Gaps = 58/273 (21%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 18 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 65
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
S A++++ + V+ S D ++W+ + L GH
Sbjct: 66 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 105
Query: 443 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 496
N V N+ S V+ F + + T K + H + V+ +RDGS I+
Sbjct: 106 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV- 164
Query: 497 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 555
S+ R W A I V+ + +S + +++
Sbjct: 165 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 206
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
LAA +D + +W+ + G + + TGH Y +
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 259 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 309
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 249 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 304
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 180
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 142
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 143 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 182
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 183 TASGQCLKTLIDDDNP 198
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 130
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 24 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 141 V---------KTGKCLKTLPAHSDPVSAVHFN 163
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 265 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 315
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 255 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 310
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 175
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 137
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 138 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 177
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 178 TASGQCLKTLIDDDNP 193
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 125
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 19 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 136 V---------KTGKCLKTLPAHSDPVSAVHFN 158
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 310
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 175
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 137
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 138 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 177
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 178 TASGQCLKTLIDDDNP 193
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 125
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 19 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 136 V---------KTGKCLKTLPAHSDPVSAVHFN 158
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 310
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 181
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 143
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 144 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 183
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 184 TASGQCLKTLIDDDNP 199
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 131
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 25 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 142 V---------KTGKCLKTLPAHSDPVSAVHFN 164
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 176
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 138
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 139 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 178
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 179 TASGQCLKTLIDDDNP 194
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 126
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 20 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 137 V---------KTGKCLKTLPAHSDPVSAVHFN 159
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 261 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 311
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 251 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 306
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 181
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 143
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 144 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 183
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 184 TASGQCLKTLIDDDNP 199
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 131
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 25 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 142 V---------KTGKCLKTLPAHSDPVSAVHFN 164
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 181
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 143
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 144 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 183
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 184 TASGQCLKTLIDDDNP 199
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 131
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 25 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 142 V---------KTGKCLKTLPAHSDPVSAVHFN 164
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 192
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 193 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 154
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 155 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 194
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 195 TASGQCLKTLIDDDNP 210
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 142
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 104/273 (38%), Gaps = 58/273 (21%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 36 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 83
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
S A++++ + V+ S D ++W+ + L GH
Sbjct: 84 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 123
Query: 443 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 496
N V N+ S V+ F + + T K + H + V+ +RDGS I+
Sbjct: 124 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV- 182
Query: 497 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 555
S+ R W A I V+ + +S + +++
Sbjct: 183 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 224
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
LAA +D + +W+ + G + + TGH Y +
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 240 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 277 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 327
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 267 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 322
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 197
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 27/229 (11%)
Query: 208 TRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLV 267
T RA ++ +KP+ + + GH AV F +G ++ + S D+L+
Sbjct: 10 TEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI 69
Query: 268 KIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHT 327
KIW + GH+ I+D D +++W + G + L+GH+
Sbjct: 70 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 129
Query: 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387
V F+P+ + +S S D + RIWD + + +P SD V+ +
Sbjct: 130 NYVFCCNFNPQSNLI---VSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVH------ 178
Query: 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA----CKPNTDDSDQP 432
FN +G++ V+ S D L R+W+ C D D P
Sbjct: 179 ------------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 147
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 41 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 158 V---------KTGKCLKTLPAHSDPVSAVHFN 180
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 282 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 332
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 199
Query: 357 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 390
WD Q FSP YI + D G+ + +
Sbjct: 200 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + IF G V+GS D L +WN
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 161
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 162 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 201
Query: 421 A----CKPNTDDSDQP 432
C D D P
Sbjct: 202 TASGQCLKTLIDDDNP 217
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 149
Query: 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 378
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 43 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 379 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ + L H + V+ V F+
Sbjct: 160 V---------KTGKCLKTLPAHSDPVSAVHFN 182
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 284
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 307
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 284 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 334
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 274 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 329
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ Q + + GH AV C +D GR V++G+ D +VK+W ET CL + +GH +
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV- 282
Query: 290 DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
D IRVW + G I L GH + + + L+S +
Sbjct: 283 -YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI-----LVSGN 336
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVF 407
D T +IWD + Q + GP HQ + C FN N
Sbjct: 337 ADSTVKIWDIKTGQ-------------------CLQTLQGPNKHQSAVTCLQFNKN--FV 375
Query: 408 VTGSSDTLARVWN 420
+T S D ++W+
Sbjct: 376 ITSSDDGTVKLWD 388
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 232 KMQNIKRVRGHRN-AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 290
++++ K ++GH + + C F G +++GSDD +K+WS T CL + GH G +
Sbjct: 107 ELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV-- 162
Query: 291 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
D ++VW G I L GHT+ V + + +++S S
Sbjct: 163 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSR 217
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
D T R+WD Q + G A + C + +G V+G
Sbjct: 218 DATLRVWDIETGQ---------CLHVLMGHVAA-----------VRCVQY--DGRRVVSG 255
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458
+ D + +VW+ P T+ + L GH N V +QF G V S
Sbjct: 256 AYDFMVKVWD---PETETC------LHTLQGHTNRVYSLQFDGIHVVS 294
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 298
++GH N VY FD G +V++GS D +++W +ET C+ + GH+
Sbjct: 275 LQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDN 330
Query: 299 XXXXXXXDCIIRVWRLPDGLPISVLRG---HTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
D +++W + G + L+G H +AVT + F+ +++SSDDGT +
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-----VITSSDDGTVK 385
Query: 356 IWDARYSQF 364
+WD + +F
Sbjct: 386 LWDLKTGEF 394
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 92/265 (34%), Gaps = 49/265 (18%)
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
G +P G H I C F N V+GS D +VW+A +
Sbjct: 106 GELKSPKVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKC---------LRT 154
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN--------SWFCHDNIVTC--- 487
L GH V Q R ++ S D T K N + + H + V C
Sbjct: 155 LVGHTGGVWSSQM-------RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 488 --------SRDGSAIIWIPRSRRS------HPKAARWTQAYHLKVXXXXXXXXXXXXX-X 532
SRD + +W + + H A R Q +V
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 267
Query: 533 XXXILPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
L T +G V+SL D V++ +D I VW+ G+ +H+LTGH T ++
Sbjct: 268 TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME- 326
Query: 591 HPFNPRIAMSAGYDGKTIVWDIWEG 615
I +S D +WDI G
Sbjct: 327 --LKDNILVSGNADSTVKIWDIKTG 349
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 547 VWS--LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604
VWS + + +++ D + VWNA G +H+L GHT + + +H + +S D
Sbjct: 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRD 218
Query: 605 GKTIVWDIWEG--IPIRIYEISRFRLV--DGKFSPDGA 638
VWDI G + + + ++ R V DG+ GA
Sbjct: 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 256
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 23/187 (12%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIR 310
F G+++ TG++DRL++IW +E + +GHE DI D +R
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 311 VWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367
+W L G L +S+ G VT +A SP G + + S D R+WD+ R
Sbjct: 191 IWDLRTGQCSLTLSIEDG----VTTVAVSPGDGK--YIAAGSLDRAVRVWDSETGFLVER 244
Query: 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT- 426
+ + + S ++ F +G V+GS D ++WN N
Sbjct: 245 L-------------DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 427 DDSDQPN 433
DS PN
Sbjct: 292 SDSKTPN 298
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA------------YCLASCRGHEGDI 288
GH+++VY +F R G+ V++GS DR VK+W+++ A C + GH+ +
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 289 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS--PRPGSVYQLL 346
D + W G P+ +L+GH +V ++A + G Y +
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 347 SS-SDDGTCRIWDARYSQFSP 366
++ S D RIW +Y + +P
Sbjct: 374 ATGSGDCKARIW--KYKKIAP 392
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + + ++GH +Y + SG +++GS DR V+IW + T C + +G T
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 211
Query: 290 DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVL-------RGHTAAVTAIAFSPRPGSV 342
D +RVW G + L GH +V ++ F+ SV
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 271
Query: 343 YQLLSSSDDGTCRIWDAR 360
+S S D + ++W+ +
Sbjct: 272 ---VSGSLDRSVKLWNLQ 286
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602
+ + +S D +F+ D I +W+ + +V L GH + Y LD P ++ +G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 603 YDGKTIVWDIWEG 615
D +WD+ G
Sbjct: 186 -DRTVRIWDLRTG 197
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 90/300 (30%)
Query: 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG----RN 381
HT+ V + FS + L++ + T +++ + S + R SD A N
Sbjct: 63 HTSVVCCVKFSNDG----EYLATGCNKTTQVY-----RVSDGSLVARLSDDSAANKDPEN 113
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLS 440
+ SSS + C F+ +G TG+ D L R+W D N +I +L
Sbjct: 114 LNTSSSPSSDLYIRSVC-FSPDGKFLATGAEDRLIRIW----------DIENRKIVMILQ 162
Query: 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500
GHE D+ +SL D P D +V+ S D + IW R+
Sbjct: 163 GHEQDI-------------YSL------DYFPS-------GDKLVSGSGDRTVRIWDLRT 196
Query: 501 RRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSL-DNRFVLAAI 559
+ L GV + S D +++ A
Sbjct: 197 GQC------------------------------SLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 560 MDCRICVWNAADGSLVHSL-------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
+D + VW++ G LV L TGH +S Y + V + + +S D +W++
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV-VFTRDGQSVVSGSLDRSVKLWNL 285
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 12/184 (6%)
Query: 240 RGHRNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 297
GHR+ V C F + +++ S D+ VK+W++ ++ GH G ++
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 298 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357
D ++ +W L +G + L ++ + A+ FSP Y L ++++ G +IW
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNR---YWLCAATEHG-IKIW 628
Query: 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN--ANGTVFVTGSSDTL 415
D + + ++A N P+++ + I+C + N A+G+ +G +D +
Sbjct: 629 DLESKSIVEDLKVDLKAEAEKADNSGPAAT---KRKVIYCTSLNWSADGSTLFSGYTDGV 685
Query: 416 ARVW 419
RVW
Sbjct: 686 IRVW 689
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 30/209 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+R+ GH + V + G++ ++GS D +++W + GH D+
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVL---RGHTAAVTAIAFSP---RPGSVYQLLSSSD 350
D I++W ++ GH V+ + FSP +P ++S+S
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP----TIVSASW 539
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
D T ++W+ N S+ + + A + +G++ +G
Sbjct: 540 DKTVKVWNL--------------------SNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVL 439
D + +W+ + S + N I L
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614
+++A D + VWN ++ L +L GHT + V P + + S G DG ++WD+ E
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE 592
Query: 615 G 615
G
Sbjct: 593 G 593
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 543 VNMIVWSLDNR-FVLAAIMDCRICVW-----NAADGSLVHSLTGHTESTYVLDV-HPFNP 595
V I +DN +++A D I +W + A G LTGH S +V DV +
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--SHFVEDVVLSSDG 442
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII 641
+ A+S +DG+ +WD+ G+ R + ++ FS D I+
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 25/218 (11%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI--TDXXXXXX 296
++ H + V C F Y+ T S D+ VKIW T + + H +
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +++W L + + GHT +V FSP L S S DGT R+
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLASCSADGTLRL 776
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF--CCAFNANGTVFVTGSSDT 414
WD R + I + R SS P+ ++ CC+++A+G + + +
Sbjct: 777 WDVRSANERKSINVKR---------FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 827
Query: 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ D ++ +GH + + Y FS
Sbjct: 828 VLLF---------DIHTSGLLAEIHTGHHSTIQYCDFS 856
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/470 (22%), Positives = 169/470 (35%), Gaps = 84/470 (17%)
Query: 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDXXXXXXXXXXXXXX 304
V C + G +I + ++ V ++ + T+ LA GH I
Sbjct: 808 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 305 XDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364
+ +W + L ++ RGH + V + FSP S L++SDD T R+W+ +
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS---FLTASDDQTIRVWETKKVCK 923
Query: 365 SPRIYIPRPSDAVAGRN----MAPSSSAGPQ-------------SHQIFCCAFNANGTVF 407
+ I + + D V N +A + G Q Q+ CC + +
Sbjct: 924 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 983
Query: 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467
G D ++ PN N GH+ V ++QF+ A +L SS
Sbjct: 984 AFGDEDGAIKIIEL--PN-------NRVFSSGVGHKKAVRHIQFT----ADGKTLI-SSS 1029
Query: 468 EDSTPKFKNSWFCHDNI--------------------VTCSRDGSAIIW------IPRSR 501
EDS + N W D + ++ S DG+ +W I R
Sbjct: 1030 EDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1088
Query: 502 RSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTP----RGVNMIV----WSLDNR 553
H + + A L +P +G N V +SLD
Sbjct: 1089 TCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1147
Query: 554 FVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPFNP--RIAMSAGYD 604
+ + I +WN +DG L+HS T +V DV F+P + +SAG
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV-CFSPDSKTLVSAG-- 1204
Query: 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654
G W++ G + + + L SPD + + D++G LYIL
Sbjct: 1205 GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1254
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 27/182 (14%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDXXXXXXXXX 299
GH+ AV F G+ +I+ S+D ++++W+ +T Y + H+ + D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKD-FRLLQDSR 1064
Query: 300 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
D ++VW + G H V + A S + S+S D T +IW
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWSF 1121
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
+ P + G N + C AF+ +G + TG + R+W
Sbjct: 1122 D---------LLSPLHELKGHNGC-----------VRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 420 NA 421
N
Sbjct: 1162 NV 1163
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 82/435 (18%), Positives = 143/435 (32%), Gaps = 153/435 (35%)
Query: 231 QKMQNIKR--VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ ++N+ R VR H +AVY A F + G+ + + D+ ++++ ET
Sbjct: 608 KTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-------------- 653
Query: 289 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348
G + ++ H V AFS + +
Sbjct: 654 ----------------------------GEKLLDIKAHEDEVLCCAFSSDDSYI---ATC 682
Query: 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN--ANGTV 406
S D +IWD+ + + S Q+ CC F +N +
Sbjct: 683 SADKKVKIWDSATGKLV--------------------HTYDEHSEQVNCCHFTNKSNHLL 722
Query: 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466
TGS+D ++W+ + ++ + GH N VN+ +FS
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNT---------MFGHTNSVNHCRFS-------------- 759
Query: 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS--RRSHPKAARWTQAYHLKVXXXXXX 524
+D + +CS DG+ +W RS R R+ +
Sbjct: 760 PDDEL------------LASCSADGTLRLWDVRSANERKSINVKRFFLSSE--------- 798
Query: 525 XXXXXXXXXXXILPTPRGVNMIV----WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580
P V +IV WS D ++ A + + G L TG
Sbjct: 799 -------------DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 845
Query: 581 HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGK-------- 632
H + D P++ +A+ A +W+I SR ++ D +
Sbjct: 846 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNI----------DSRLKVADCRGHLSWVHG 894
Query: 633 --FSPDGASIILSDD 645
FSPDG+S + + D
Sbjct: 895 VMFSPDGSSFLTASD 909
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 281
+ ++GH V C+ F G + TG D+ ++IW++ L SC
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 25/218 (11%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI--TDXXXXXX 296
++ H + V C F Y+ T S D+ VKIW T + + H +
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D +++W L + + GHT +V FSP L S S DGT R+
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLASCSADGTLRL 769
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF--CCAFNANGTVFVTGSSDT 414
WD R + I + R SS P+ ++ CC+++A+G + + +
Sbjct: 770 WDVRSANERKSINVKR---------FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820
Query: 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+ D ++ +GH + + Y FS
Sbjct: 821 VLLF---------DIHTSGLLAEIHTGHHSTIQYCDFS 849
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/470 (22%), Positives = 169/470 (35%), Gaps = 84/470 (17%)
Query: 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDXXXXXXXXXXXXXX 304
V C + G +I + ++ V ++ + T+ LA GH I
Sbjct: 801 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 305 XDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364
+ +W + L ++ RGH + V + FSP S L++SDD T R+W+ +
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS---FLTASDDQTIRVWETKKVCK 916
Query: 365 SPRIYIPRPSDAVAGRN----MAPSSSAGPQ-------------SHQIFCCAFNANGTVF 407
+ I + + D V N +A + G Q Q+ CC + +
Sbjct: 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976
Query: 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467
G D ++ PN N GH+ V ++QF+ A +L SS
Sbjct: 977 AFGDEDGAIKIIEL--PN-------NRVFSSGVGHKKAVRHIQFT----ADGKTLI-SSS 1022
Query: 468 EDSTPKFKNSWFCHDNI--------------------VTCSRDGSAIIW------IPRSR 501
EDS + N W D + ++ S DG+ +W I R
Sbjct: 1023 EDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081
Query: 502 RSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTP----RGVNMIV----WSLDNR 553
H + + A L +P +G N V +SLD
Sbjct: 1082 TCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140
Query: 554 FVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPFNP--RIAMSAGYD 604
+ + I +WN +DG L+HS T +V DV F+P + +SAG
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV-CFSPDSKTLVSAG-- 1197
Query: 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654
G W++ G + + + L SPD + + D++G LYIL
Sbjct: 1198 GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 27/182 (14%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDXXXXXXXXX 299
GH+ AV F G+ +I+ S+D ++++W+ +T Y + H+ + D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKD-FRLLQDSR 1057
Query: 300 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
D ++VW + G H V + A S + S+S D T +IW
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWS- 1113
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
+ P + G N + C AF+ +G + TG + R+W
Sbjct: 1114 --------FDLLSPLHELKGHNGC-----------VRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 420 NA 421
N
Sbjct: 1155 NV 1156
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 82/435 (18%), Positives = 143/435 (32%), Gaps = 153/435 (35%)
Query: 231 QKMQNIKR--VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ ++N+ R VR H +AVY A F + G+ + + D+ ++++ ET
Sbjct: 601 KTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-------------- 646
Query: 289 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348
G + ++ H V AFS + +
Sbjct: 647 ----------------------------GEKLLDIKAHEDEVLCCAFSSDDSYI---ATC 675
Query: 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN--ANGTV 406
S D +IWD+ + + S Q+ CC F +N +
Sbjct: 676 SADKKVKIWDSATGKLV--------------------HTYDEHSEQVNCCHFTNKSNHLL 715
Query: 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466
TGS+D ++W+ + ++ + GH N VN+ +FS
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNT---------MFGHTNSVNHCRFS-------------- 752
Query: 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS--RRSHPKAARWTQAYHLKVXXXXXX 524
+D + +CS DG+ +W RS R R+ +
Sbjct: 753 PDDEL------------LASCSADGTLRLWDVRSANERKSINVKRFFLSSE--------- 791
Query: 525 XXXXXXXXXXXILPTPRGVNMIV----WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580
P V +IV WS D ++ A + + G L TG
Sbjct: 792 -------------DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838
Query: 581 HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGK-------- 632
H + D P++ +A+ A +W+I SR ++ D +
Sbjct: 839 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNI----------DSRLKVADCRGHLSWVHG 887
Query: 633 --FSPDGASIILSDD 645
FSPDG+S + + D
Sbjct: 888 VMFSPDGSSFLTASD 902
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 281
+ ++GH V C+ F G + TG D+ ++IW++ L SC
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 298
+RGH +V G V++GS D + +W + CL GH I
Sbjct: 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 299 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
D IR+W L +G + L+GHTA V + S + L+S++ DG+ R WD
Sbjct: 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWD 378
Query: 359 A 359
A
Sbjct: 379 A 379
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 29/217 (13%)
Query: 239 VRGHRNAVY-CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 297
+RGH +V C F+ + YVITG+DD++++++ L GH+G +
Sbjct: 117 LRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHG 173
Query: 298 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357
D +RVW + G V GH + V + Y +++ S D T +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVW 232
Query: 358 DARYSQFSPR--------IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
P + P + P + H + +G + V+
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEE-------NPYFVGVLRGHMASVRTVSGHGNIVVS 285
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 446
GS D VW+ + + +LSGH + +
Sbjct: 286 GSYDNTLIVWDVAQMKC---------LYILSGHTDRI 313
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH 284
V +M+ + + GH + +Y I+D + I+ S D ++IW +E + + +GH
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
++A MD I +W+ +G L+++L GHT +L + + + +SA DG WD
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWD 378
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 80/315 (25%)
Query: 308 IIRVWRLPDGLPI-SVLRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
I++ W P +P + LRGH T+ +T + F +++ +DD R++D+ +F
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDN-----YVITGADDKMIRVYDSINKKFL 155
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
++ +G + ++ + A+G + V+GS+D RVW+ K
Sbjct: 156 LQL---------SGHDGG-----------VWALKY-AHGGILVSGSTDRTVRVWDIKKGC 194
Query: 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485
V GH + V + ++KN + IV
Sbjct: 195 CTH---------VFEGHNSTVRCLDI--------------------VEYKNIKY----IV 221
Query: 486 TCSRDGSAIIW-IPR--SRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRG 542
T SRD + +W +P+ S H + + +H + RG
Sbjct: 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-------------TPEENPYFVGVLRG 268
Query: 543 VNMIVWSLDNR--FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
V ++ V++ D + VW+ A ++ L+GHT+ Y ++ + +S
Sbjct: 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS-TIYDHERKRCIS 327
Query: 601 AGYDGKTIVWDIWEG 615
A D +WD+ G
Sbjct: 328 ASMDTTIRIWDLENG 342
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 26/231 (11%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM--ETAY-CLASCRGHEGDIT 289
+ + + GH N V + SG + T S D+ V +W + E Y C++ H D+
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 290 DXXXXXXXXXXXXXXXDCIIRVWRLP--DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
D ++++R D + + L GH + V ++AF P S +L S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP---SGQRLAS 211
Query: 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS-----SSAGPQSHQIFCCAFNA 402
SDD T RIW R Y+P VA PS + +G S I+ A+
Sbjct: 212 CSDDRTVRIW---------RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID--VLSGHENDVNYVQF 451
T D RV+ PN+ D QP + + H DVN V +
Sbjct: 263 LTGALATACGDDAIRVFQE-DPNS-DPQQPTFSLTAHLHQAHSQDVNCVAW 311
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW---------------SMETAYCLASCRG 283
+ GH + V+ FD SG+ + + SDDR V+IW S + C+ + G
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 284 -HEGDITDXXXXXXXXXXXXXXXDCIIRVWRL-PD--------GLPISVLRGHTAAVTAI 333
H I D D IRV++ P+ L + + H+ V +
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 334 AFSPR-PGSVYQLLSSSDDGTCRIW 357
A++P+ PG L S SDDG W
Sbjct: 310 AWNPKEPG---LLASCSDDGEVAFW 331
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 18/218 (8%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ ++GH ++V FD SG+ + + S D +K+W + C+ + GH+ +++
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCR 355
D I++W + G + GH V + RP L++S S+D T R
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV----RPNQDGTLIASCSNDQTVR 259
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN--GTVFVTGSSD 413
+W + + R V + AP SS S + G ++GS D
Sbjct: 260 VWVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317
Query: 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
++W+ + L GH+N V V F
Sbjct: 318 KTIKMWDV---------STGMCLMTLVGHDNWVRGVLF 346
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 290
Q + I+ + GH + V +G ++++ S D+ +K+W ++T YC+ + GH +
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 291 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP------------- 337
D +RVW + + LR H V I+++P
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 338 ------RPGSVYQLLSSSDDGTCRIWDA 359
+PG LLS S D T ++WD
Sbjct: 300 ETKKSGKPGPF--LLSGSRDKTIKMWDV 325
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 38/208 (18%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GHR+ V IF +++ S+D +K+W ET + +GH + D
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 301 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D I++W I + GH V++++ P ++S+S D T ++W+ +
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQ 222
Query: 361 -------YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413
++ + + RP N +GT+ + S+D
Sbjct: 223 TGYCVKTFTGHREWVRMVRP---------------------------NQDGTLIASCSND 255
Query: 414 TLARVW-NACKPNTDDSDQPNHEIDVLS 440
RVW A K + + H ++ +S
Sbjct: 256 QTVRVWVVATKECKAELREHRHVVECIS 283
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 73/212 (34%), Gaps = 43/212 (20%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE---- 285
VQ +K GHR V ++ G + + S+D+ V++W + T C A R H
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 286 ----------GDITDXXXXXXXXX------XXXXXXDCIIRVWRLPDGLPISVLRGHTAA 329
I++ D I++W + G+ + L GH
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389
V + F G + +LS +DD T R+WD +N +
Sbjct: 341 VRGVLF--HSGGKF-ILSCADDKTLRVWDY--------------------KNKRCMKTLN 377
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
H + F+ VTGS D +VW
Sbjct: 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 148 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 206
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 263
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
+D R Q + + + G I +F+ +G + + G D
Sbjct: 264 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 305
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 306 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 340
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 313
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Query: 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 268 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 315
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 316 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 61 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 637 GASIILS--DDVGQLYILNTGQG 657
G + D++ +Y L T +G
Sbjct: 120 GNYVACGGLDNICSIYNLKTREG 142
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 313
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 637 GASIILS--DDVGQLYILNTGQG 657
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 313
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 637 GASIILS--DDVGQLYILNTGQG 657
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 313
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 637 GASIILS--DDVGQLYILNTGQG 657
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 313
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 637 GASIILS--DDVGQLYILNTGQG 657
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 298
+RGH +V G V++GS D + +W + CL GH I
Sbjct: 266 LRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 299 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
D IR+W L +G L+GHTA V + S + L+S++ DG+ R WD
Sbjct: 324 RCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWD 378
Query: 359 A 359
A
Sbjct: 379 A 379
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 37/221 (16%)
Query: 239 VRGHRNAVY-CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 297
+RGH +V C F+ + YVITG+DD+ ++++ L GH+G +
Sbjct: 117 LRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVW-ALKYAHG 173
Query: 298 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357
D +RVW + G V GH + V + Y +++ S D T +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVW 232
Query: 358 DARYSQFSPRIYIPRPSDAV--AGRNMAPSSSAGPQSHQIFCCAF----------NANGT 405
+P+ S + P P+ + F + +G
Sbjct: 233 K-----------LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGN 281
Query: 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 446
+ V+GS D VW+ + + +LSGH + +
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKC---------LYILSGHTDRI 313
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 30/143 (20%)
Query: 241 GHRNAVYC--AIFDRSGRYVITGSDDRLVKIWSM-----------------------ETA 275
GH + V C + ++ +Y++TGS D + +W + E
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 276 YCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 335
Y + RGH + D + VW + + +L GHT + + +
Sbjct: 261 YFVGVLRGHXASV--RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY 318
Query: 336 SPRPGSVYQLLSSSDDGTCRIWD 358
+ +S+S D T RIWD
Sbjct: 319 DHERK---RCISASXDTTIRIWD 338
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 80/315 (25%)
Query: 308 IIRVWRLPDGLPI-SVLRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
I++ W P +P + LRGH T+ +T + F +++ +DD R++D+ +F
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDN-----YVITGADDKXIRVYDSINKKFL 155
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
++ +G + ++ + A+G + V+GS+D RVW+ K
Sbjct: 156 LQL---------SGHDGG-----------VWALKY-AHGGILVSGSTDRTVRVWDIKKGC 194
Query: 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485
V GH + V + ++KN + IV
Sbjct: 195 CTH---------VFEGHNSTVRCLDI--------------------VEYKNIKY----IV 221
Query: 486 TCSRDGSAIIW-IPR--SRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRG 542
T SRD + +W +P+ S H + + +H + RG
Sbjct: 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-------------TPEENPYFVGVLRG 268
Query: 543 VNMIVWSLDNR--FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
V ++ V++ D + VW+ A ++ L+GHT+ Y ++ + +S
Sbjct: 269 HXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS-TIYDHERKRCIS 327
Query: 601 AGYDGKTIVWDIWEG 615
A D +WD+ G
Sbjct: 328 ASXDTTIRIWDLENG 342
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
++A D I +W+ +G L ++L GHT +L + + + +SA DG WD
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWD 378
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW----SMETAYCLASCRGHEGD 287
+M + + GH N V + G Y+ T S D+ V IW S E C++ + H D
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 288 ITDXXXXXXXXXXXXXXXDCIIRVWR--LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
+ D +R+W+ D ++VL GH V + F G V++L
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-VFRL 214
Query: 346 LSSSDDGTCRIW 357
S SDD T R+W
Sbjct: 215 CSGSDDSTVRVW 226
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 32/218 (14%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI--TDXXXX 294
K V H N + F S ++T S D +W +E+ L S GH D+ D
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 295 XXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
D VW + G + H + V ++ + P G + S SDD TC
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFA--SGSDDATC 264
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414
R++D R + + I + G + F+ +G + G +D
Sbjct: 265 RLYDLRADR---EVAIYSKESIIFGASSVD---------------FSLSGRLLFAGYNDY 306
Query: 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
VW+ K + + +L GHEN V+ ++ S
Sbjct: 307 TINVWDVLKGS---------RVSILFGHENRVSTLRVS 335
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDIW 613
+L A D +W+ G L+ S GH LD+ P +S G D K +VWD+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 614 EGIPIRIYEISRFRLVDGKFSPDG 637
G ++ +E + ++ P G
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSG 252
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
G + + +SL R + A D I VW+ GS V L GH L V P S
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC-SG 344
Query: 602 GYDGKTIVW 610
+D VW
Sbjct: 345 SWDHTLRVW 353
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357
D I VW + G +S+L GH V+ + SP G+ + S S D T R+W
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAF--CSGSWDHTLRVW 353
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 219 ACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL 278
A + +A P+ + + + + GHR AV FD +Y+++ S DR +K+W+ T +
Sbjct: 236 AVWDMASPTDITLR----RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFV 289
Query: 279 ASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338
+ GH+ I D IR+W + G + VL GH V I F +
Sbjct: 290 RTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 347
Query: 339 PGSVYQLLSSSDDGTCRIWDARYSQFSPR 367
+++S + DG ++WD + PR
Sbjct: 348 -----RIVSGAYDGKIKVWDL-VAALDPR 370
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 81/221 (36%), Gaps = 43/221 (19%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 300
GH +V C +D R +ITGS D V++W + T L + H +
Sbjct: 171 GHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMM 226
Query: 301 XXXXXDCIIRVWRLPDGLPIS---VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357
D I VW + I+ VL GH AAV + F + ++S+S D T ++W
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-----YIVSASGDRTIKVW 281
Query: 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 417
+ +F + H+ + V+GSSD R
Sbjct: 282 NTSTCEFVRTL----------------------NGHKRGIACLQYRDRLVVSGSSDNTIR 319
Query: 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458
+W+ + + VL GHE V ++F + S
Sbjct: 320 LWDI---------ECGACLRVLEGHEELVRCIRFDNKRIVS 351
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 295
++ + GH+ + C + R V++GS D +++W +E CL GHE +
Sbjct: 289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--RCIRF 344
Query: 296 XXXXXXXXXXDCIIRVW--------RLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLL 346
D I+VW R P G L + L H+ V + F +Q++
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-----FQIV 399
Query: 347 SSSDDGTCRIWD 358
SSS D T IWD
Sbjct: 400 SSSHDDTILIWD 411
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
VN++ D++++++A D I VWN + V +L GH L + R+ +S
Sbjct: 258 AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ---YRDRLVVSG 312
Query: 602 GYDGKTIVWDIWEGIPIRIYE 622
D +WDI G +R+ E
Sbjct: 313 SSDNTIRLWDIECGACLRVLE 333
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
+R V++ D I +W+ G+ + L GH E + F+ + +S YDGK VWD
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWD 362
Query: 612 I 612
+
Sbjct: 363 L 363
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598
T +GV + D++ +++ + D I +W+ LTGHT S L ++ R+
Sbjct: 132 TSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ---YDERVI 186
Query: 599 MSAGYDGKTIVWDI 612
++ D VWD+
Sbjct: 187 ITGSSDSTVRVWDV 200
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610
D R ++ D + VW+ G ++++L H E+ L FN + ++ D VW
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL---RFNNGMMVTCSKDRSIAVW 238
Query: 611 DI 612
D+
Sbjct: 239 DM 240
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 296
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 297 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
D + +W+ +G I+V H+A+V ++ ++P L++SSD G
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-GKV 125
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 410
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 452
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 574 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 610
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 296
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 297 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
D + +W+ +G I+V H+A+V ++ ++P L++SSD G
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-GKV 127
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 410
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 178
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 452
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 179 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 215
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 574 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 610
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 296
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 297 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
D + +W+ +G I+V H+A+V ++ ++P LL +S DG
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKV 125
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 410
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 452
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 574 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 610
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 296
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 297 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
D + +W+ +G I+V H+A+V ++ ++P L++SSD G
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-GKV 125
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 410
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 452
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 574 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 610
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 257 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXX-XXXXXXXXXXXDCIIRVWRL 314
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 315 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 541 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 599 MSAGYDGKTIVWD 611
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 648 QLYILNTGQGESQKD 662
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-------------METAYC 277
Q + + GH + V A+F + +I+GS+D +KIW+ +E ++C
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Query: 278 LAS 280
+A+
Sbjct: 276 IAT 278
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 40/231 (17%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 290 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 344 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 383
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 384 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
SA + H + A++A+G G +D + RVW N
Sbjct: 270 LVDDLRPEFAGYSAAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 295
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 296 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 352
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 353 TCRIWDARYSQF 364
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 256 RYVITGSDDRLVKIWSM---ETAYCLASCRGHEGDITDXXXXXXXXXXXXX-XXDCIIRV 311
R ++ SD V++W + ET C+ DI D I+V
Sbjct: 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371
W L + +S R H A VT +A SP SV+ LS S+D +WD R P
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF--LSCSEDNRILLWDTR---------CP 202
Query: 372 RPSDAV--AGRNMAPSSSAG-PQSHQIFCCAFNANGTVFVTGSSDT 414
+P+ + + P+S A PQ ++F + NGTV + + T
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFG-DENGTVSLVDTKST 247
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 257 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXX-XXXXXXXXXXXDCIIRVWRL 314
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 315 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 541 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 599 MSAGYDGKTIVWD 611
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 648 QLYILNTGQGESQKD 662
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-------------METAYC 277
Q + + GH + V A+F + +I+GS+D +KIW+ +E ++C
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Query: 278 LAS 280
+A+
Sbjct: 276 IAT 278
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 257 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXXXXXXXXXXXX-XDCIIRVWRL 314
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 315 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 541 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 599 MSAGYDGKTIVWD 611
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 648 QLYILNTGQGESQKD 662
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-------------METAYC 277
Q + + GH + V A+F + +I+GS+D +KIW+ +E ++C
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Query: 278 LAS 280
+A+
Sbjct: 276 IAT 278
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 257 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXXXXXXXXXXXX-XDCIIRVWRL 314
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 315 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 541 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 599 MSAGYDGKTIVWD 611
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 648 QLYILNTGQGESQKD 662
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-------------METAYC 277
Q + + GH + V A+F + +I+GS+D +KIW+ +E ++C
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Query: 278 LAS 280
+A+
Sbjct: 276 IAT 278
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 21/189 (11%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRS--GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 290
M + R H + V C F S +++G D LVK+W + T + +GH +T
Sbjct: 143 MHTLSR-GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 291 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
D + R+W L G +S + A + I FSP Y + ++++
Sbjct: 202 VTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNR---YWMCAATE 257
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
G RI+D + I + + + + P + A++A+G+ +G
Sbjct: 258 KGI-RIFDLE----NKDIIVELAPEHQGSKKIVP---------ECVSIAWSADGSTLYSG 303
Query: 411 SSDTLARVW 419
+D + RVW
Sbjct: 304 YTDNVIRVW 312
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 22/188 (11%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+R+ GH V +G + ++ S D +++W+++ C GH D+
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
D +RVW + ++ RG HT V+ + FSP + ++S D +
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVK 179
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+WD + +D N S + P +G++ + D +
Sbjct: 180 VWDLATGRLV--------TDLKGHTNYVTSVTVSP------------DGSLCASSDKDGV 219
Query: 416 ARVWNACK 423
AR+W+ K
Sbjct: 220 ARLWDLTK 227
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP-FNPRIAMSAG 602
+ +S DNR +++ D + VWN G +H+L+ HT+ + P + + +S G
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 603 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD--VGQLYILNTGQGESQ 660
+D VWD+ G + + + SPDG+ SD V +L+ L G+ S+
Sbjct: 174 WDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Query: 661 KDA 663
A
Sbjct: 234 MAA 236
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602
V+ + S + F ++A D + +WN +G + GHT+ + P N +I +S G
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI-VSGG 128
Query: 603 YDGKTIVWDIWEGIPIRIYEISRFRLVDG----KFSPD-GASIILS---DDVGQLYILNT 654
D VW++ +G ++ +SR D +FSP A +I+S D++ +++ L T
Sbjct: 129 RDNALRVWNV-KGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Query: 655 GQ 656
G+
Sbjct: 186 GR 187
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 31/222 (13%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ ++GH VY + ++++ S D + +W+ T+ + + H + +
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 297 XXXXXXXXXDCIIRVWRLP-----DG-LPIS-VLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
D ++ L DG +P+S VL GH ++ + P + +L++ S
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET--RLITGS 177
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
D TC +WD Q RI ++ G +A S I + NAN +F++
Sbjct: 178 GDQTCVLWDVTTGQ---RI-------SIFGSEFPSGHTADVLSLSIN--SLNAN--MFIS 223
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
GS DT R+W D + + GHE D+N V+F
Sbjct: 224 GSCDTTVRLW--------DLRITSRAVRTYHGHEGDINSVKF 257
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 31/171 (18%)
Query: 259 ITGSDDRLVKIWSME-TAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG 317
I+GS D V++W + T+ + + GHEGDI D R++ + G
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Query: 318 LPISVLR-------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370
+ V VT++AFS S L + +G C +WD ++
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSI---SGRLLFAGYSNGDCYVWDTLLAE------- 331
Query: 371 PRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGSSDTLARVW 419
M + SH+ I C +++G+ TGS D ++W
Sbjct: 332 -----------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 567 WNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626
+N D +L GH+ Y LD P I +SA DG+ IVW+ ++
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWI-VSASQDGRLIVWNALTSQKTHAIKLHCP 109
Query: 627 RLVDGKFSPDGASI 640
+++ F+P+G S+
Sbjct: 110 WVMECAFAPNGQSV 123
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 40/231 (17%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 290 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 344 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 383
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 384 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
S + H + A++A+G G +D + RVW N
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 295
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 296 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 352
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 353 TCRIWDARYSQF 364
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 40/231 (17%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 88 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 146
Query: 290 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343
+ D +++ W L + GH + + + SP G++
Sbjct: 147 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 204
Query: 344 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 383
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 205 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 263
Query: 384 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
S + H + A++A+G G +D + RVW N
Sbjct: 264 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 295
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 296 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 352
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 353 TCRIWDARYSQF 364
+ W+ Q
Sbjct: 171 MVKAWNLNQFQI 182
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 40/231 (17%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 290 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 344 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 383
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 384 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
S + H + A++A+G G +D + RVW N
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 295
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 296 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 352
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 353 TCRIWDARYSQF 364
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 27/223 (12%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 296
H ++ A+ D G+ T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 297 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
D + +W+ +G I+V H+A+V ++ ++P LL +S DG
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-XLLVASSDGKV 125
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 410
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 452
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 40/225 (17%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 290 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 344 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 383
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 384 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
S + H + A++A+G G +D + RVW
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVW 313
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 295
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 296 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 352
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 353 TCRIWDARYSQF 364
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 546 IVWSLDNRFVLAA-IMDCRICVWNAADGSLVH-------SLTGHTESTYVLDVHPFNPRI 597
I W N V+A+ DC + VW DG LV +L GHT+ ++ HP +
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 598 AMSAGYDGKTIVWDIWEGIPI 618
+SAG D +VWD+ G +
Sbjct: 147 LLSAGXDNVILVWDVGTGAAV 167
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 306 DCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
DC + VW +PDG P+ L GHT V +A+ P +V LLS+ D +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV--LLSAGXDNVILVWD 160
Query: 359 A 359
Sbjct: 161 V 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 546 IVWSLDNRFVLAA-IMDCRICVWNAADGSLVH-------SLTGHTESTYVLDVHPFNPRI 597
I W N V+A+ DC + VW DG LV +L GHT+ ++ HP +
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 598 AMSAGYDGKTIVWDIWEGIPI 618
+SAG D +VWD+ G +
Sbjct: 147 LLSAGCDNVILVWDVGTGAAV 167
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 306 DCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
DC + VW +PDG P+ L GHT V +A+ P +V LLS+ D +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV--LLSAGCDNVILVWD 160
Query: 359 A 359
Sbjct: 161 V 161
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 44/229 (19%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT---- 289
+ +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRV 156
Query: 290 --DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
+ D ++ W L + GH + + + SP G++ + S
Sbjct: 157 VPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL--IAS 213
Query: 348 SSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGR-----------N 381
+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 382 MAP-----SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425
+ P S +A P + + A++A+G G +D + RVW N
Sbjct: 274 LRPEFAGYSKAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 295
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 296 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 352
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 353 TCRIWD 358
+ W+
Sbjct: 177 XVKAWN 182
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 242 HRNAVYCAIF--DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 299
H V C F + S +++ D+LVK+W++ + GH G +
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 300 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
D +W L +G + L G + A+ FSP Y L +++ + +IWD
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNR---YWLCAATGP-SIKIWD- 283
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
+I + D + ++ SS A P Q A++A+G G +D L RVW
Sbjct: 284 ----LEGKIIV----DELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVW 333
Query: 420 NA 421
Sbjct: 334 QV 335
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ +RGH + V + G++ ++GS D +++W + T GH D+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
D I++W +V H+ V+ + FSP + ++S D +
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-IVSCGWDKLVK 198
Query: 356 IWD 358
+W+
Sbjct: 199 VWN 201
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 31/131 (23%)
Query: 306 DCIIRVWRLPD-----GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D I +W+L G+P LRGH+ V+ + S LS S DGT R+WD
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA---LSGSWDGTLRLWDLT 116
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ R ++ D + AF+++ V+GS D ++WN
Sbjct: 117 TGTTTRR-FVGHTKD-------------------VLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 421 ---ACKPNTDD 428
CK D
Sbjct: 157 TLGVCKYTVQD 167
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
N +++ D + VWN A+ L + GHT + V P + + S G DG+ ++WD
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 243
Query: 612 IWEG 615
+ EG
Sbjct: 244 LNEG 247
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 23/197 (11%)
Query: 231 QKMQNIKR--VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ + N+ R VR H +AVY A F G+ + + D+ ++++ ET L + HE ++
Sbjct: 607 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV 666
Query: 289 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348
D +++W G + H+ V F+ + L +
Sbjct: 667 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL-LATG 725
Query: 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408
S D ++WD + ++ ++ + C F+ + +
Sbjct: 726 SSDCFLKLWDLNQKECRNTMF--------------------GHTNSVNHCRFSPDDKLLA 765
Query: 409 TGSSDTLARVWNACKPN 425
+ S+D ++W+A N
Sbjct: 766 SCSADGTLKLWDATSAN 782
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 25/180 (13%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXX 301
H+ V+ F + +I+ SDD +++W+ + C+ RGH+ + D
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLS 1066
Query: 302 XXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361
D ++VW + G H V + S + S+S D T +IW
Sbjct: 1067 WSF-DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT---KFSSTSADKTAKIWSFD- 1121
Query: 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
+ P + G N + C AF+ + T+ TG + R+WN
Sbjct: 1122 --------LLLPLHELRGHNGC-----------VRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368
+ +W ++ RGH + V + FSP S L+SSDD T R+W+ + + +
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS---FLTSSDDQTIRLWETKKVCKNSAV 926
Query: 369 YIPRPSDAVAGRN 381
+ + D V N
Sbjct: 927 MLKQEVDVVFQEN 939
Score = 37.4 bits (85), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGK 606
+S D+RF+ +D ++ +WN+ G LVH+ H+E + + ++ G D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 607 TIVWDIWEGIPIRIYEISRFRLVD-GKFSPDGASIILSDDVGQLYILNTGQGESQKDAKY 665
+WD+ + R V+ +FSPD + G L + + +K
Sbjct: 731 LKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV 789
Query: 666 DQFFL 670
QFFL
Sbjct: 790 KQFFL 794
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 566 VWNAADGSLVHSLT------GHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIP 617
+WN ++G L+H T +V D+ F+P ++ +SAG G W++ G
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAATHGGWVTDL-CFSPDGKMLISAG--GYIKWWNVVTGES 1215
Query: 618 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654
+ + + L SPD + + D++G LYIL T
Sbjct: 1216 SQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQT 1252
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 281
+ +RGH V C+ F + TG D+ ++IW++ L C
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLC 1171
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 242 HRNAVYCAIF--DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 299
H V C F + S +++ D+LVK+W++ + GH G +
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 300 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
D +W L +G + L G + A+ FSP Y L +++ + +IWD
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNR---YWLCAATGP-SIKIWD- 260
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
+I + D + ++ SS A P Q A++A+G G +D L RVW
Sbjct: 261 ----LEGKIIV----DELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVW 310
Query: 420 NA 421
Sbjct: 311 QV 312
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
+ +RGH + V + G++ ++GS D +++W + T GH D+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
D I++W +V H+ V+ + FSP + ++S D +
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-IVSCGWDKLVK 175
Query: 356 IWD 358
+W+
Sbjct: 176 VWN 178
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 31/131 (23%)
Query: 306 DCIIRVWRLPD-----GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
D I +W+L G+P LRGH+ V+ + S LS S DGT R+WD
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA---LSGSWDGTLRLWDLT 93
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ R ++ D + AF+++ V+GS D ++WN
Sbjct: 94 TGTTTRR-FVGHTKD-------------------VLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 421 ---ACKPNTDD 428
CK D
Sbjct: 134 TLGVCKYTVQD 144
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
N +++ D + VWN A+ L + GHT + V P + + S G DG+ ++WD
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 220
Query: 612 IWEGIPIRIYEISRFRLVDGK-FSPD--------GASIILSDDVGQLYI 651
+ EG +Y + +++ FSP+ G SI + D G++ +
Sbjct: 221 LNEG--KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 267
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 282 RGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341
+ H +IT D +++W + DG L GH A VT IA R +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 342 VYQLLSSSDDGTCRIWD 358
V LS+S DGT R+W+
Sbjct: 193 V---LSASLDGTIRLWE 206
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 299
+ H + + F SG +I+ S D +KIWS++ + GH +TD
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 300 XXXXXXDCIIRVWRLPDGLPI 320
D IR+W G I
Sbjct: 193 VLSASLDGTIRLWECGTGTTI 213
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIW 613
++++ D ++ +W+ DGS +L GH + V D+ + R +SA DG +W+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGTIRLWECG 208
Query: 614 EGIPIRIY 621
G I +
Sbjct: 209 TGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 282 RGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341
+ H +IT D +++W + DG L GH A VT IA R +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 342 VYQLLSSSDDGTCRIWD 358
V LS+S DGT R+W+
Sbjct: 196 V---LSASLDGTIRLWE 209
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 299
+ H + + F SG +I+ S D +KIWS++ + GH +TD
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 300 XXXXXXDCIIRVWRLPDGLPI 320
D IR+W G I
Sbjct: 196 VLSASLDGTIRLWECGTGTTI 216
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIW 613
++++ D ++ +W+ DGS +L GH + V D+ + R +SA DG +W+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGTIRLWECG 211
Query: 614 EGIPIRIY 621
G I +
Sbjct: 212 TGTTIHTF 219
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 233 MQNIKR--VRGHRNAVYCAIFDRSGR------YVITGSDDRLVKIWSM----ETAYC--- 277
+Q +KR + GH + V + S + +I+GS D+ V IW + + Y
Sbjct: 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68
Query: 278 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
+ GH ++D D +R+W L G GH + V ++AFSP
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 338 RPGSVYQLLSSSDDGTCRIWD 358
Q+LS+ + ++W+
Sbjct: 129 DN---RQILSAGAEREIKLWN 146
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 220 CYAIAKPSTMVQKMQNI------KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME 273
C+AI+ ++ ++ KR GH++ VY F R +++ +R +K+W++
Sbjct: 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI- 147
Query: 274 TAYCLASCR 282
L C+
Sbjct: 148 ----LGECK 152
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608
S +N F +++ D + +W+ G+ GH Y + P N +I +SAG + +
Sbjct: 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIK 143
Query: 609 VWDI 612
+W+I
Sbjct: 144 LWNI 147
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 11/135 (8%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 296
K + GH + V + + I+ S D+ +++W + T GH+ ++
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 297 XXXXXXXXXDCIIRVWRLPDGLPISVL--RGHTAAVTAIAFSP--------RPGSVYQLL 346
+ I++W + S H+ V+ + +SP +P + Y
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY-FA 188
Query: 347 SSSDDGTCRIWDARY 361
S DG ++W+ +
Sbjct: 189 SVGWDGRLKVWNTNF 203
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG--DITD 290
+Q + +G AV + + G+ DR ++IW++ + CL++ H I
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 339
Query: 291 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ ++ +W+ P ++ L+GHT+ V ++ SP +V S++
Sbjct: 340 SPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATV---ASAAA 395
Query: 351 DGTCRIW 357
D T R+W
Sbjct: 396 DETLRLW 402
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 27/169 (15%)
Query: 278 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG----LPISVLRGHTAAVTAI 333
+A+ GH ++ D ++ VW G +P+ H AV A+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 334 AFSPRPGSVYQLLSSSDDGTCRIWDA----------RYSQFSPRIYIPRPSDAVAGR--- 380
A+ P +V + D RIW+ +SQ ++ P + ++G
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 353
Query: 381 ----------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
MA + + ++ + +G + ++D R+W
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG--DITD 290
+Q + +G AV + + G+ DR ++IW++ + CL++ H I
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 328
Query: 291 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ ++ +W+ P ++ L+GHT+ V ++ SP +V S++
Sbjct: 329 SPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATV---ASAAA 384
Query: 351 DGTCRIW 357
D T R+W
Sbjct: 385 DETLRLW 391
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 27/169 (15%)
Query: 278 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG----LPISVLRGHTAAVTAI 333
+A+ GH ++ D ++ VW G +P+ H AV A+
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 334 AFSPRPGSVYQLLSSSDDGTCRIWDA----------RYSQFSPRIYIPRPSDAVAGR--- 380
A+ P +V + D RIW+ +SQ ++ P + ++G
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 342
Query: 381 ----------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
MA + + ++ + +G + ++D R+W
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG--DITD 290
+Q + +G AV + + G+ DR ++IW++ + CL++ H I
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 248
Query: 291 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ ++ +W+ P ++ L+GHT+ V ++ SP +V S++
Sbjct: 249 SPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATV---ASAAA 304
Query: 351 DGTCRIW 357
D T R+W
Sbjct: 305 DETLRLW 311
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 27/169 (15%)
Query: 278 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG----LPISVLRGHTAAVTAI 333
+A+ GH ++ D ++ VW G +P+ H AV A+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 334 AFSPRPGSVYQLLSSSDDGTCRIWDA----------RYSQFSPRIYIPRPSDAVAGR--- 380
A+ P +V + D RIW+ +SQ ++ P + ++G
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 381 ----------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
MA + + ++ + +G + ++D R+W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ---FS 365
+++ L G +L+GH + A+++SPR Y L ++S D ++WD R + +
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--YILATASADSRVKLWDVRRASGCLIT 225
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
+ + S AV N A + ++ F ++G +T +D R+WN+
Sbjct: 226 LDQHNGKKSQAVESANTA-------HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 236 IKRVRGHRNAVYCAIFDRSGR----YVITGSDDRLVKIWSM--ETAYCLASCRGHEGDIT 289
K+ + H +A++ + + + V+TGS D LVK+W E S GH+ +
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 290 DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
D IR+W L +G I + +AFSP
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRL 314
G+Y+ +G+ D ++ I+ + T L + GH I D I+++ +
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Query: 315 PDGLPISVLRGHTAAVTAIAFSP 337
L GH + V +AF P
Sbjct: 236 QHANLAGTLSGHASWVLNVAFCP 258
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605
I +S D +++ + +D I +++ A G L+H+L GH L P + ++ ++A DG
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 228
Query: 606 KTIVWDI 612
++D+
Sbjct: 229 YIKIYDV 235
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
D II ++ + G + L GH + ++ FSP L+++SDDG +I+D +++
Sbjct: 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS---QLLVTASDDGYIKIYDVQHA--- 238
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
N+A + S + + AF + T FV+ SSD +VW+
Sbjct: 239 ---------------NLAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
D ++VW L + H++ V +A P +++ LS +DG +WD R + +
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF--LSCGEDGRILLWDTRKPKPA 217
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398
RI D A + S + P+ F C
Sbjct: 218 TRI------DFCASDTIPTSVTWHPEKDDTFAC 244
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
D + VW+ + +++ S H+ + P I +S G DG+ ++WD
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDITDXXXXXXXXX 299
C D + R +IT ++ ++ T + L GH D+
Sbjct: 107 CVCQDNTVRLIITKNE-------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 159
Query: 300 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
DC + +WRL D PI L G+ + I+ RP + QL+ +G RI+D
Sbjct: 160 IASVGDDCTLIIWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDITDXXXXXXXXX 299
C D + R +IT ++ ++ T + L GH D+
Sbjct: 106 CVCQDNTVRLIITKNE-------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158
Query: 300 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
DC + +WRL D PI L G+ + I+ RP + QL+ +G RI+D
Sbjct: 159 IASVGDDCTLIIWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 306 DCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
D ++ +W + G +P+S+L+ H A + + F P + L + S+DG+ WDA
Sbjct: 258 DGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF--HPSNPEHLFTCSEDGSLWHWDA 310
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDG 631
S + SLTG + +D HP + + G DG +WD+ +G +P+ + + + +
Sbjct: 227 SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV 286
Query: 632 KFSP 635
F P
Sbjct: 287 HFHP 290
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357
I V+++ + P L GH ++ + F+ LLS+SDDGT RIW
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTN---KLLLSASDDGTLRIW 274
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
A S+S+G ++Q+ C A++ +G VTG + R+WN
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN 136
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 238 RVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSM-------ETAYCLASCRGHEGDIT 289
R+RGH+ Y ++ + ++++ SDD V +W + + A GH +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 290 DXXXXXXXXXXX-XXXXDCIIRVWRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQL 345
D D + +W P ++ HTA V ++F+P S + L
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--SEFIL 291
Query: 346 LSSSDDGTCRIWDAR 360
+ S D T +WD R
Sbjct: 292 ATGSADKTVALWDLR 306
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 543 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 600
VN + ++ + F+LA D + +W+ + L +H+ H + + + P N I S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 601 AGYDGKTIVWDI 612
+G D + VWD+
Sbjct: 338 SGTDRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 238 RVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSM-------ETAYCLASCRGHEGDIT 289
R+RGH+ Y ++ + ++++ SDD V +W + + A GH +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 290 DXXXXXXXXXXX-XXXXDCIIRVWRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQL 345
D D + +W P ++ HTA V ++F+P S + L
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--SEFIL 291
Query: 346 LSSSDDGTCRIWDAR 360
+ S D T +WD R
Sbjct: 292 ATGSADKTVALWDLR 306
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 543 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 600
VN + ++ + F+LA D + +W+ + L +H+ H + + + P N I S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 601 AGYDGKTIVWDI 612
+G D + VWD+
Sbjct: 338 SGTDRRLNVWDL 349
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 538 PTPR----------GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 587
PTPR + S D++ + D I VW+ + +LV GHT+
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+D+ ++ + G D WD+ EG ++ ++ + ++ + P G + + +
Sbjct: 189 IDISNDGTKL-WTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESS 246
Query: 648 QLYILNTGQ 656
+ +L+ +
Sbjct: 247 NVEVLHVNK 255
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 543 VNMIVWSLDNRFVLAA-IMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 600
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 601 AGYDGKTIVWDI 612
+G D + VWD+
Sbjct: 342 SGTDRRLHVWDL 353
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
LRGH ++++P LLS+SDD T +WD + P+ + +N+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGY--LLSASDDHTICLWDINAT--------PKEHRVIDAKNI 228
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 229 FTGHTAVVED----VAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTVD---AH 278
Query: 443 ENDVNYVQFSGCAVASRFSLADSSKEDST 471
+VN + F+ S F LA S + +
Sbjct: 279 TAEVNCLSFNP---YSEFILATGSADKTV 304
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 543 VNMIVWSLDNRFVLAAIMD-CRICVWNAADGSLV---HSLTGHTESTYVLDVHPFNPRIA 598
V + W L + + ++ D ++ +W+ + + H++ HT L +P++ I
Sbjct: 236 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 599 MSAGYDGKTIVWDIWEGIPIRI--YEISRFRLVDGKFSPDGASIILSDDVG-QLYILN-- 653
+ D +WD+ + +++ +E + + ++SP +I+ S +L++ +
Sbjct: 296 ATGSADKTVALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 654 -TGQGESQKDAK 664
G+ +S +DA+
Sbjct: 355 KIGEEQSTEDAE 366
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 543 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 600
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 601 AGYDGKTIVWDI 612
+G D + VWD+
Sbjct: 344 SGTDRRLHVWDL 355
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
LRGH ++++P LLS+SDD T +WD + P+ + +N+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGY--LLSASDDHTICLWDINAT--------PKEHRVIDAKNI 230
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 231 FTGHTAVVED----VAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTVD---AH 280
Query: 443 ENDVNYVQFSGCAVASRFSLADSSKEDST 471
+VN + F+ S F LA S + +
Sbjct: 281 TAEVNCLSFNP---YSEFILATGSADKTV 306
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 543 VNMIVWSLDNRFVLAAIMD-CRICVWNAADGSLV---HSLTGHTESTYVLDVHPFNPRIA 598
V + W L + + ++ D ++ +W+ + + H++ HT L +P++ I
Sbjct: 238 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 599 MSAGYDGKTIVWDIWEGIPIRI--YEISRFRLVDGKFSPDGASIILSDDVG-QLYILN-- 653
+ D +WD+ + +++ +E + + ++SP +I+ S +L++ +
Sbjct: 298 ATGSADKTVALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 654 -TGQGESQKDAK 664
G+ +S +DA+
Sbjct: 357 KIGEEQSTEDAE 368
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 32/145 (22%)
Query: 336 SPRPGSVYQ---------LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386
SPR G+V L+ + G IWD R++ V R+ +
Sbjct: 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--------------VLIRSWSFGD 256
Query: 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK-------PNTDDSDQPNHEIDVL 439
A P +H C + N + V GSS T +WN K N+D+ H + +
Sbjct: 257 HA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315
Query: 440 SGHENDVNYVQFSGCAVASRFSLAD 464
G E ++N+ S S+++
Sbjct: 316 KGLE-ELNFCGIRSLNALSTISVSN 339
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 543 VNMIVWSLDNRFVLAA-IMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 600
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 601 AGYDGKTIVWDI 612
+G D + VWD+
Sbjct: 340 SGTDRRLHVWDL 351
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
LRGH ++++P LLS+SDD T +WD + P+ + +N+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGY--LLSASDDHTICLWDINAT--------PKEHRVIDAKNI 226
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 227 FTGHTAVVED----VAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTVD---AH 276
Query: 443 ENDVNYVQFSGCAVASRFSLADSSKEDST 471
+VN + F+ S F LA S + +
Sbjct: 277 TAEVNCLSFNP---YSEFILATGSADKTV 302
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 543 VNMIVWSLDNRFVLAAIMD-CRICVWNAADGSLV---HSLTGHTESTYVLDVHPFNPRIA 598
V + W L + + ++ D ++ +W+ + + H++ HT L +P++ I
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 599 MSAGYDGKTIVWDIWEGIPIRI--YEISRFRLVDGKFSPDGASIILSDDVG-QLYILN-- 653
+ D +WD+ + +++ +E + + ++SP +I+ S +L++ +
Sbjct: 294 ATGSADKTVALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 654 -TGQGESQKDAK 664
G+ +S +DA+
Sbjct: 353 KIGEEQSTEDAE 364
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 543 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 600
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 601 AGYDGKTIVWDI 612
+G D + VWD+
Sbjct: 336 SGTDRRLNVWDL 347
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 23/149 (15%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
LRGH ++++P LLS+SDD T +WD +P+ V + +
Sbjct: 173 LRGHQKEGYGLSWNPNLSG--HLLSASDDHTICLWDIS--------AVPKEGKVVDAKTI 222
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 223 FTGHTAVVEDVSWHLL----HESLFGSVADDQKLMIWDTRSNNT---SKPSHSVD---AH 272
Query: 443 ENDVNYVQFSGCAVASRFSLADSSKEDST 471
+VN + F+ S F LA S + +
Sbjct: 273 TAEVNCLSFNPY---SEFILATGSADKTV 298
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR 282
+ + + GH ++ D +Y +TGS D +K+W + C+A+ +
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
R + + ++ + + + D VW + +G + +L GHT + + +DV F + ++
Sbjct: 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVT 91
Query: 601 AGYDGKTIVWDIWEG---------IPIRIYEIS 624
D +WD+ G +P++ E S
Sbjct: 92 GSADYSIKLWDVSNGQCVATWKSPVPVKRVEFS 124
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDI 288
V+ ++ + GH+ V C ++R + +GS + + A + + + +GH ++
Sbjct: 163 VESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220
Query: 289 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348
D ++++W +P H AAV A+A+ P ++
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 349 SDDGTCRIWDA 359
+ D W+A
Sbjct: 281 TMDKQIHFWNA 291
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+N++ WS N V+A ++ + VWNA GS V +L ESTYV V
Sbjct: 96 LNLLDWS--NLNVVAVALERNVYVWNADSGS-VSALAETDESTYVASV 140
>pdb|3D5L|A Chain A, Crystal Structure Of Regulatory Protein Recx
pdb|3D5L|B Chain B, Crystal Structure Of Regulatory Protein Recx
Length = 221
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 948 RKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLV 1007
R+H + KGI D +D TPE ++L LKL R N+ E R K Q +
Sbjct: 133 RQHLRQKGIGESDIDDALTQFTPEVQAELA-KKLALKLFRRYRNQPE--RRREQKVQQGL 189
Query: 1008 SVIGTSSEAHQ 1018
+ G SS ++
Sbjct: 190 TTKGFSSSVYE 200
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
H+++V + F+ + +V L S ++G IWD SP Y P G++M
Sbjct: 109 FSNHSSSVKTVKFNAKQDNV--LASGGNNGEIFIWDMNKCTESPSNYTPL----TPGQSM 162
Query: 383 APSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWN 420
+ ++ A+N + VF + S A +W+
Sbjct: 163 S-------SVDEVISLAWNQSLAHVFASAGSSNFASIWD 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,971,012
Number of Sequences: 62578
Number of extensions: 1962273
Number of successful extensions: 5129
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4079
Number of HSP's gapped (non-prelim): 624
length of query: 1491
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1380
effective length of database: 8,027,179
effective search space: 11077507020
effective search space used: 11077507020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)