Query 000454
Match_columns 1491
No_of_seqs 1177 out of 4766
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0644 Uncharacterized conser 100.0 6.5E-96 1E-100 867.8 29.2 618 47-913 13-633 (1113)
2 KOG0271 Notchless-like WD40 re 100.0 5.6E-48 1.2E-52 430.3 30.2 362 233-653 105-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 7.1E-42 1.5E-46 381.6 29.6 332 276-753 106-479 (480)
4 KOG0319 WD40-repeat-containing 100.0 3.5E-39 7.7E-44 384.4 35.3 431 213-755 74-619 (775)
5 KOG0272 U4/U6 small nuclear ri 100.0 8.8E-39 1.9E-43 361.9 24.1 291 233-611 165-458 (459)
6 KOG0318 WD40 repeat stress pro 100.0 6.9E-36 1.5E-40 345.0 44.8 475 229-786 45-594 (603)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-37 2.7E-42 352.6 24.2 287 282-653 172-458 (459)
8 KOG0286 G-protein beta subunit 100.0 4.2E-36 9E-41 327.3 32.8 292 233-611 45-343 (343)
9 KOG0273 Beta-transducin family 100.0 1.3E-35 2.9E-40 339.5 36.6 327 236-654 172-522 (524)
10 KOG0291 WD40-repeat-containing 100.0 1.5E-33 3.3E-38 335.8 46.5 438 229-758 131-615 (893)
11 KOG0319 WD40-repeat-containing 100.0 9.5E-35 2.1E-39 346.7 31.0 384 190-657 103-621 (775)
12 KOG0291 WD40-repeat-containing 100.0 5.7E-33 1.2E-37 330.9 45.2 426 242-758 95-553 (893)
13 KOG0318 WD40 repeat stress pro 100.0 2.7E-32 5.8E-37 315.5 43.6 363 231-659 178-564 (603)
14 KOG0279 G protein beta subunit 100.0 8E-33 1.7E-37 300.5 32.7 295 232-655 4-313 (315)
15 KOG0306 WD40-repeat-containing 100.0 1.5E-32 3.3E-37 327.1 36.3 431 216-754 79-663 (888)
16 KOG0295 WD40 repeat-containing 100.0 1.2E-33 2.6E-38 315.6 24.8 311 229-654 94-405 (406)
17 KOG0286 G-protein beta subunit 100.0 6.7E-32 1.4E-36 294.5 34.0 294 278-653 48-343 (343)
18 KOG0315 G-protein beta subunit 100.0 7.7E-32 1.7E-36 288.3 32.3 296 256-634 11-309 (311)
19 KOG0296 Angio-associated migra 100.0 1.2E-31 2.5E-36 300.0 33.9 339 235-655 56-398 (399)
20 cd00200 WD40 WD40 domain, foun 100.0 5.2E-31 1.1E-35 294.0 36.5 288 236-611 2-289 (289)
21 KOG0265 U5 snRNP-specific prot 100.0 9E-32 2E-36 294.7 28.4 294 234-611 38-336 (338)
22 KOG0293 WD40 repeat-containing 100.0 1E-31 2.2E-36 302.7 28.8 293 234-614 215-514 (519)
23 KOG1408 WD40 repeat protein [F 100.0 1E-30 2.2E-35 308.1 34.9 491 228-755 63-713 (1080)
24 cd00200 WD40 WD40 domain, foun 100.0 3.2E-30 6.9E-35 287.8 36.2 288 278-653 2-289 (289)
25 KOG0285 Pleiotropic regulator 100.0 3.2E-31 7E-36 294.4 27.2 295 230-656 138-440 (460)
26 KOG0276 Vesicle coat complex C 100.0 7.9E-30 1.7E-34 298.7 36.8 289 235-608 5-294 (794)
27 KOG0292 Vesicle coat complex C 100.0 1.1E-29 2.3E-34 305.8 38.6 368 206-655 14-397 (1202)
28 KOG0263 Transcription initiati 100.0 6.1E-31 1.3E-35 318.2 26.7 281 235-614 370-650 (707)
29 KOG0282 mRNA splicing factor [ 100.0 1.3E-31 2.7E-36 308.5 19.7 297 232-611 203-503 (503)
30 KOG0306 WD40-repeat-containing 100.0 9.9E-30 2.1E-34 303.3 35.2 479 226-786 46-614 (888)
31 KOG0266 WD40 repeat-containing 100.0 5.9E-30 1.3E-34 315.7 32.7 294 234-613 149-454 (456)
32 KOG0279 G protein beta subunit 100.0 1.6E-29 3.5E-34 274.9 30.9 299 189-570 12-313 (315)
33 KOG0273 Beta-transducin family 100.0 1E-29 2.3E-34 291.3 30.8 288 244-613 236-523 (524)
34 KOG0315 G-protein beta subunit 100.0 1.6E-29 3.5E-34 270.5 29.7 295 216-591 13-309 (311)
35 KOG0645 WD40 repeat protein [G 100.0 5.2E-29 1.1E-33 269.9 33.2 294 233-613 4-311 (312)
36 KOG0284 Polyadenylation factor 100.0 7.9E-31 1.7E-35 296.2 19.7 284 284-654 95-379 (464)
37 KOG0296 Angio-associated migra 100.0 2.5E-29 5.4E-34 281.4 29.6 309 227-613 90-398 (399)
38 KOG0284 Polyadenylation factor 100.0 1.2E-30 2.7E-35 294.6 18.8 282 242-612 95-379 (464)
39 KOG0263 Transcription initiati 100.0 4.7E-30 1E-34 310.5 24.2 281 277-656 370-650 (707)
40 KOG0281 Beta-TrCP (transducin 100.0 7.3E-31 1.6E-35 289.9 15.3 275 242-657 196-479 (499)
41 KOG0316 Conserved WD40 repeat- 100.0 3.2E-29 6.9E-34 266.3 27.0 288 234-653 8-297 (307)
42 PLN00181 protein SPA1-RELATED; 100.0 3.6E-28 7.7E-33 319.7 42.0 290 239-612 479-792 (793)
43 PLN00181 protein SPA1-RELATED; 100.0 4.7E-28 1E-32 318.5 41.4 303 264-654 457-792 (793)
44 KOG0276 Vesicle coat complex C 100.0 1.4E-28 2.9E-33 288.5 31.1 294 279-659 7-302 (794)
45 KOG0292 Vesicle coat complex C 100.0 3.8E-28 8.2E-33 292.6 33.4 304 239-620 5-328 (1202)
46 KOG0293 WD40 repeat-containing 100.0 4.3E-29 9.4E-34 281.7 23.8 292 277-656 216-514 (519)
47 KOG0285 Pleiotropic regulator 100.0 1.6E-28 3.5E-33 273.1 26.7 316 275-778 141-456 (460)
48 KOG0266 WD40 repeat-containing 100.0 3.8E-28 8.3E-33 299.6 32.6 290 279-654 152-453 (456)
49 KOG0295 WD40 repeat-containing 100.0 4.1E-29 9E-34 279.4 19.7 282 216-612 123-405 (406)
50 KOG0282 mRNA splicing factor [ 100.0 3.5E-29 7.6E-34 288.4 18.4 291 275-653 204-503 (503)
51 KOG0645 WD40 repeat protein [G 100.0 4.2E-27 9.1E-32 255.2 30.6 293 277-655 6-311 (312)
52 KOG0265 U5 snRNP-specific prot 100.0 4.1E-27 8.8E-32 258.3 27.8 287 278-653 40-336 (338)
53 KOG0275 Conserved WD40 repeat- 100.0 4.5E-28 9.7E-33 265.5 18.6 288 241-611 211-507 (508)
54 KOG2106 Uncharacterized conser 100.0 9.4E-26 2E-30 259.9 38.1 421 235-778 96-539 (626)
55 KOG0313 Microtubule binding pr 100.0 7.2E-27 1.6E-31 262.6 26.9 295 283-654 103-417 (423)
56 KOG0281 Beta-TrCP (transducin 100.0 3.9E-28 8.4E-33 268.5 15.5 272 214-575 208-482 (499)
57 KOG1539 WD repeat protein [Gen 100.0 1.1E-25 2.5E-30 271.9 37.3 448 221-756 180-649 (910)
58 KOG0278 Serine/threonine kinas 100.0 2.1E-27 4.6E-32 254.1 19.6 292 278-660 7-302 (334)
59 KOG0274 Cdc4 and related F-box 99.9 4.3E-26 9.2E-31 282.3 31.2 290 237-624 201-493 (537)
60 KOG0643 Translation initiation 99.9 5.6E-26 1.2E-30 245.7 25.9 294 238-613 5-317 (327)
61 KOG1446 Histone H3 (Lys4) meth 99.9 5E-25 1.1E-29 244.6 34.1 295 232-655 3-303 (311)
62 KOG0283 WD40 repeat-containing 99.9 3E-26 6.5E-31 280.0 25.9 295 230-657 253-578 (712)
63 KOG0278 Serine/threonine kinas 99.9 2.1E-26 4.5E-31 246.5 20.4 291 237-618 8-302 (334)
64 KOG1063 RNA polymerase II elon 99.9 3.9E-25 8.5E-30 263.1 31.6 416 232-777 43-676 (764)
65 KOG0313 Microtubule binding pr 99.9 1.6E-25 3.4E-30 251.9 25.8 300 242-612 104-417 (423)
66 KOG0772 Uncharacterized conser 99.9 1.7E-25 3.6E-30 258.4 26.1 301 234-610 158-484 (641)
67 KOG0973 Histone transcription 99.9 2E-25 4.4E-30 278.3 28.3 297 242-661 12-361 (942)
68 KOG0643 Translation initiation 99.9 1.1E-25 2.4E-30 243.4 22.1 295 280-655 5-317 (327)
69 KOG0288 WD40 repeat protein Ti 99.9 4.8E-26 1E-30 258.2 16.3 289 235-611 167-459 (459)
70 KOG1063 RNA polymerase II elon 99.9 4.3E-24 9.2E-29 254.3 33.5 374 231-657 179-650 (764)
71 KOG1407 WD40 repeat protein [F 99.9 1.9E-24 4.2E-29 233.4 26.6 285 237-612 14-310 (313)
72 KOG1539 WD repeat protein [Gen 99.9 3.3E-24 7.1E-29 259.4 31.5 384 205-654 203-647 (910)
73 KOG1407 WD40 repeat protein [F 99.9 3.3E-24 7.2E-29 231.5 27.2 287 279-655 14-311 (313)
74 KOG2048 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 242.5 42.9 437 237-778 19-530 (691)
75 KOG0300 WD40 repeat-containing 99.9 5.7E-25 1.2E-29 241.0 21.5 296 232-615 137-478 (481)
76 KOG0299 U3 snoRNP-associated p 99.9 2.2E-24 4.8E-29 247.9 26.6 297 236-610 135-453 (479)
77 KOG0277 Peroxisomal targeting 99.9 1.1E-24 2.4E-29 234.3 22.5 282 247-612 12-308 (311)
78 PTZ00421 coronin; Provisional 99.9 3.4E-23 7.3E-28 256.1 38.0 266 242-592 19-313 (493)
79 KOG0274 Cdc4 and related F-box 99.9 4.6E-24 1E-28 264.3 29.1 281 284-663 207-490 (537)
80 KOG0305 Anaphase promoting com 99.9 1E-23 2.2E-28 253.0 30.4 278 247-615 181-463 (484)
81 KOG0308 Conserved WD40 repeat- 99.9 1.2E-24 2.5E-29 257.5 21.0 340 242-661 20-399 (735)
82 KOG0275 Conserved WD40 repeat- 99.9 1.9E-24 4E-29 237.3 19.5 285 283-653 211-507 (508)
83 KOG0268 Sof1-like rRNA process 99.9 6.4E-25 1.4E-29 245.4 15.8 292 278-663 59-353 (433)
84 KOG0277 Peroxisomal targeting 99.9 5.1E-24 1.1E-28 229.3 21.6 282 289-654 12-308 (311)
85 KOG0640 mRNA cleavage stimulat 99.9 1.5E-23 3.2E-28 230.0 25.1 295 236-654 105-425 (430)
86 KOG1408 WD40 repeat protein [F 99.9 2.3E-23 5E-28 246.5 28.5 331 246-656 327-714 (1080)
87 KOG0289 mRNA splicing factor [ 99.9 2.5E-23 5.5E-28 237.0 27.2 284 244-612 220-505 (506)
88 KOG0973 Histone transcription 99.9 1.5E-23 3.2E-28 261.8 27.1 278 233-573 59-358 (942)
89 KOG2106 Uncharacterized conser 99.9 7.6E-22 1.7E-26 227.9 38.9 367 226-655 137-521 (626)
90 KOG0316 Conserved WD40 repeat- 99.9 2.8E-23 6.1E-28 221.3 24.4 274 319-682 9-291 (307)
91 PTZ00420 coronin; Provisional 99.9 2E-22 4.3E-27 250.6 36.1 252 261-638 50-319 (568)
92 KOG0310 Conserved WD40 repeat- 99.9 4.1E-23 8.8E-28 239.2 26.9 283 285-657 26-311 (487)
93 KOG0301 Phospholipase A2-activ 99.9 6.5E-23 1.4E-27 244.5 28.1 282 232-613 3-288 (745)
94 KOG0647 mRNA export protein (c 99.9 1.2E-22 2.6E-27 223.5 25.5 274 241-644 25-312 (347)
95 KOG0641 WD40 repeat protein [G 99.9 2.2E-21 4.9E-26 204.9 34.0 302 232-655 22-349 (350)
96 KOG0310 Conserved WD40 repeat- 99.9 7.7E-23 1.7E-27 236.9 25.2 281 243-613 26-309 (487)
97 KOG0294 WD40 repeat-containing 99.9 1.9E-22 4.2E-27 222.9 26.5 249 232-615 32-283 (362)
98 KOG0305 Anaphase promoting com 99.9 1.9E-22 4E-27 242.2 28.5 279 289-657 181-463 (484)
99 KOG2096 WD40 repeat protein [G 99.9 2E-22 4.4E-27 222.1 25.6 305 236-612 79-401 (420)
100 KOG0288 WD40 repeat protein Ti 99.9 1.7E-23 3.6E-28 237.7 17.6 285 276-652 166-458 (459)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-21 5.8E-26 222.4 36.3 295 255-635 1-300 (300)
102 KOG0268 Sof1-like rRNA process 99.9 1.4E-23 3.1E-28 234.8 16.0 289 236-618 59-350 (433)
103 KOG0301 Phospholipase A2-activ 99.9 3.6E-22 7.8E-27 238.3 28.7 283 276-657 5-290 (745)
104 KOG0772 Uncharacterized conser 99.9 1.7E-22 3.6E-27 233.8 24.4 310 275-653 157-485 (641)
105 KOG0300 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 221.5 21.9 324 258-657 127-478 (481)
106 KOG0641 WD40 repeat protein [G 99.9 2.5E-21 5.3E-26 204.6 29.6 299 193-569 33-348 (350)
107 KOG0308 Conserved WD40 repeat- 99.9 1.5E-22 3.3E-27 239.7 22.8 281 295-655 35-327 (735)
108 KOG2048 WD40 repeat protein [G 99.9 5.8E-20 1.3E-24 219.5 43.8 471 213-734 80-583 (691)
109 PTZ00421 coronin; Provisional 99.9 3.2E-21 6.9E-26 238.6 32.2 266 328-659 21-294 (493)
110 KOG0299 U3 snoRNP-associated p 99.9 1.7E-21 3.6E-26 224.4 26.8 273 279-643 136-443 (479)
111 KOG1332 Vesicle coat complex C 99.9 4.8E-22 1E-26 213.2 20.5 259 238-569 6-285 (299)
112 KOG0646 WD40 repeat protein [G 99.9 7.2E-22 1.6E-26 227.8 23.4 299 260-637 12-331 (476)
113 KOG1036 Mitotic spindle checkp 99.9 4.3E-21 9.2E-26 212.4 27.2 270 284-645 12-294 (323)
114 PTZ00420 coronin; Provisional 99.9 6.3E-21 1.4E-25 237.3 31.2 216 227-500 58-294 (568)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-20 8E-25 213.0 34.6 275 297-663 1-287 (300)
116 KOG0640 mRNA cleavage stimulat 99.9 2.7E-21 5.8E-26 212.4 20.2 296 389-753 109-424 (430)
117 KOG0289 mRNA splicing factor [ 99.9 2E-20 4.4E-25 213.5 27.1 282 285-654 219-505 (506)
118 KOG0264 Nucleosome remodeling 99.9 6.4E-21 1.4E-25 220.1 23.2 263 241-613 122-404 (422)
119 KOG1445 Tumor-specific antigen 99.9 7.4E-20 1.6E-24 214.6 32.2 143 543-685 630-788 (1012)
120 KOG1446 Histone H3 (Lys4) meth 99.9 1.4E-19 3.1E-24 201.4 31.2 255 317-661 4-268 (311)
121 COG2319 FOG: WD40 repeat [Gene 99.9 5.6E-18 1.2E-22 197.7 46.5 333 237-659 59-404 (466)
122 KOG1538 Uncharacterized conser 99.9 1.6E-19 3.5E-24 212.6 32.5 279 245-612 14-292 (1081)
123 KOG1273 WD40 repeat protein [G 99.9 3E-20 6.6E-25 205.0 24.6 291 246-612 26-321 (405)
124 KOG4283 Transcription-coupled 99.9 4.7E-20 1E-24 201.8 25.8 303 238-654 38-364 (397)
125 KOG0646 WD40 repeat protein [G 99.9 5E-21 1.1E-25 220.9 19.2 245 242-598 80-335 (476)
126 KOG0650 WD40 repeat nucleolar 99.9 2.5E-20 5.5E-25 218.9 24.7 319 234-652 391-732 (733)
127 KOG1036 Mitotic spindle checkp 99.9 8.2E-20 1.8E-24 202.3 26.5 282 242-602 12-293 (323)
128 KOG2096 WD40 repeat protein [G 99.9 9.6E-20 2.1E-24 201.2 26.8 308 279-657 80-404 (420)
129 KOG0321 WD40 repeat-containing 99.9 3.7E-20 8E-25 219.3 24.4 312 248-615 54-393 (720)
130 KOG0269 WD40 repeat-containing 99.9 1.3E-20 2.8E-25 227.3 20.5 287 244-615 40-342 (839)
131 KOG0294 WD40 repeat-containing 99.9 1.2E-19 2.5E-24 201.0 26.3 264 300-657 4-283 (362)
132 KOG0639 Transducin-like enhanc 99.9 2.7E-20 6E-25 214.3 22.0 282 283-654 417-703 (705)
133 KOG1332 Vesicle coat complex C 99.8 1.6E-20 3.6E-25 201.5 17.9 264 282-655 8-286 (299)
134 KOG0264 Nucleosome remodeling 99.8 4.9E-20 1.1E-24 212.8 23.1 265 325-655 122-404 (422)
135 KOG0283 WD40 repeat-containing 99.8 5.1E-20 1.1E-24 225.8 23.5 295 321-701 260-578 (712)
136 KOG2445 Nuclear pore complex c 99.8 3.2E-19 6.8E-24 197.0 26.7 295 240-579 10-330 (361)
137 KOG1274 WD40 repeat protein [G 99.8 4.2E-19 9.1E-24 217.9 30.4 284 283-652 11-297 (933)
138 COG2319 FOG: WD40 repeat [Gene 99.8 2.4E-17 5.2E-22 192.4 44.0 343 228-656 92-443 (466)
139 KOG2055 WD40 repeat protein [G 99.8 2.3E-19 5E-24 206.5 25.8 283 243-655 213-512 (514)
140 KOG4328 WD40 protein [Function 99.8 2.4E-19 5.1E-24 206.4 25.8 306 270-655 171-495 (498)
141 KOG0639 Transducin-like enhanc 99.8 6.3E-20 1.4E-24 211.4 20.2 283 235-612 412-703 (705)
142 KOG0267 Microtubule severing p 99.8 5.8E-21 1.3E-25 228.5 10.8 257 297-647 4-260 (825)
143 KOG1274 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 213.2 29.2 273 241-597 11-285 (933)
144 KOG0267 Microtubule severing p 99.8 1.6E-20 3.5E-25 224.7 11.5 238 237-561 22-259 (825)
145 KOG0647 mRNA export protein (c 99.8 1.3E-18 2.9E-23 191.8 24.3 285 192-604 27-315 (347)
146 KOG0644 Uncharacterized conser 99.8 1.2E-19 2.6E-24 218.9 15.3 273 276-683 181-461 (1113)
147 KOG4328 WD40 protein [Function 99.8 2.7E-18 5.9E-23 197.8 24.8 309 230-613 173-495 (498)
148 KOG0269 WD40 repeat-containing 99.8 7.4E-19 1.6E-23 212.2 20.6 287 286-654 40-339 (839)
149 KOG1445 Tumor-specific antigen 99.8 1.4E-17 3E-22 195.8 29.3 201 479-702 638-857 (1012)
150 KOG0650 WD40 repeat nucleolar 99.8 2.4E-18 5.3E-23 202.5 23.0 334 277-753 392-733 (733)
151 KOG1009 Chromatin assembly com 99.8 4.8E-18 1E-22 193.6 24.5 310 243-660 13-377 (434)
152 KOG1963 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 197.3 36.7 363 226-657 40-540 (792)
153 KOG1273 WD40 repeat protein [G 99.8 4E-18 8.7E-23 188.4 21.9 294 288-677 26-338 (405)
154 KOG2445 Nuclear pore complex c 99.8 1.2E-17 2.7E-22 184.6 25.5 272 324-655 10-318 (361)
155 KOG0302 Ribosome Assembly prot 99.8 4.3E-18 9.3E-23 192.1 21.3 267 323-653 147-436 (440)
156 KOG2055 WD40 repeat protein [G 99.8 3.3E-17 7E-22 189.0 25.1 287 390-754 211-511 (514)
157 KOG0307 Vesicle coat complex C 99.8 2E-18 4.4E-23 216.8 16.1 287 247-616 10-330 (1049)
158 KOG0322 G-protein beta subunit 99.8 6.8E-18 1.5E-22 183.2 17.6 312 234-612 5-322 (323)
159 KOG1034 Transcriptional repres 99.8 5.2E-17 1.1E-21 180.9 25.0 312 238-613 33-383 (385)
160 KOG0321 WD40 repeat-containing 99.8 3.6E-17 7.8E-22 194.3 24.3 264 236-572 93-393 (720)
161 KOG0270 WD40 repeat-containing 99.8 1.9E-17 4.2E-22 190.5 20.8 248 247-576 177-455 (463)
162 KOG0302 Ribosome Assembly prot 99.8 3.1E-17 6.7E-22 185.2 20.8 215 237-502 145-381 (440)
163 KOG4227 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 183.5 21.7 305 236-612 49-386 (609)
164 KOG4378 Nuclear protein COP1 [ 99.8 8.1E-17 1.7E-21 186.0 23.7 284 264-637 11-305 (673)
165 KOG1963 WD40 repeat protein [G 99.8 2.2E-15 4.8E-20 185.8 37.6 438 239-757 12-540 (792)
166 KOG4283 Transcription-coupled 99.7 6E-17 1.3E-21 177.6 20.6 263 239-569 97-364 (397)
167 KOG0307 Vesicle coat complex C 99.7 1.2E-17 2.6E-22 209.9 17.1 293 290-658 11-330 (1049)
168 KOG4378 Nuclear protein COP1 [ 99.7 7.6E-17 1.6E-21 186.2 21.9 265 245-595 36-305 (673)
169 KOG0270 WD40 repeat-containing 99.7 3.4E-16 7.4E-21 180.3 24.4 306 289-660 129-454 (463)
170 KOG2919 Guanine nucleotide-bin 99.7 9.2E-16 2E-20 170.5 26.4 277 247-604 53-361 (406)
171 KOG1009 Chromatin assembly com 99.7 2.5E-16 5.3E-21 179.8 22.1 297 231-575 53-377 (434)
172 KOG2919 Guanine nucleotide-bin 99.7 4.1E-16 9E-21 173.2 22.5 286 288-645 52-360 (406)
173 KOG1334 WD40 repeat protein [G 99.7 9.2E-17 2E-21 186.2 15.3 331 222-614 121-467 (559)
174 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-16 3.5E-21 187.4 17.4 271 232-624 283-572 (577)
175 KOG1034 Transcriptional repres 99.7 3.2E-16 6.9E-21 174.7 18.7 276 241-570 87-383 (385)
176 KOG1007 WD repeat protein TSSC 99.7 1.5E-15 3.2E-20 166.7 22.9 270 263-613 38-361 (370)
177 KOG1538 Uncharacterized conser 99.7 9.3E-16 2E-20 181.4 22.8 276 287-656 14-294 (1081)
178 KOG1188 WD40 repeat protein [G 99.7 1E-15 2.2E-20 171.7 20.8 281 298-654 41-345 (376)
179 KOG1587 Cytoplasmic dynein int 99.7 7.2E-15 1.6E-19 181.7 29.4 288 307-657 222-518 (555)
180 KOG0322 G-protein beta subunit 99.7 5.9E-16 1.3E-20 168.3 16.8 302 277-654 6-322 (323)
181 KOG1007 WD repeat protein TSSC 99.7 2.1E-15 4.6E-20 165.5 20.5 279 237-570 57-361 (370)
182 KOG4227 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 166.8 22.3 301 278-654 49-386 (609)
183 KOG1517 Guanine nucleotide bin 99.7 6.1E-15 1.3E-19 182.5 24.8 290 244-616 1065-1384(1387)
184 KOG1587 Cytoplasmic dynein int 99.7 3.8E-14 8.1E-19 175.4 30.9 285 264-614 221-517 (555)
185 KOG1188 WD40 repeat protein [G 99.7 3.7E-15 8E-20 167.3 19.2 286 256-612 41-345 (376)
186 KOG1240 Protein kinase contain 99.6 4.1E-14 8.9E-19 178.0 28.9 321 230-611 1035-1431(1431)
187 KOG1310 WD40 repeat protein [G 99.6 3.4E-15 7.4E-20 174.4 16.8 182 229-422 36-231 (758)
188 KOG1517 Guanine nucleotide bin 99.6 5.2E-14 1.1E-18 174.5 26.0 299 286-657 1065-1383(1387)
189 KOG4497 Uncharacterized conser 99.6 5.7E-14 1.2E-18 156.4 23.0 365 248-648 13-425 (447)
190 KOG1334 WD40 repeat protein [G 99.6 5.2E-15 1.1E-19 171.8 15.1 315 276-656 133-467 (559)
191 KOG0303 Actin-binding protein 99.6 5.3E-14 1.2E-18 160.0 22.3 227 280-592 76-319 (472)
192 PRK11028 6-phosphogluconolacto 99.6 7.3E-13 1.6E-17 157.3 33.2 277 300-655 5-304 (330)
193 KOG0649 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 147.4 24.8 285 287-653 12-314 (325)
194 KOG0642 Cell-cycle nuclear pro 99.6 1.8E-14 3.8E-19 170.4 16.4 266 322-658 289-564 (577)
195 PRK11028 6-phosphogluconolacto 99.6 2.7E-12 5.7E-17 152.5 34.6 284 259-613 6-304 (330)
196 KOG0290 Conserved WD40 repeat- 99.6 1.5E-13 3.2E-18 151.4 21.1 247 241-566 94-361 (364)
197 KOG0303 Actin-binding protein 99.6 6E-14 1.3E-18 159.6 18.6 210 237-501 75-296 (472)
198 KOG0290 Conserved WD40 repeat- 99.6 4.2E-13 9.2E-18 147.9 23.4 300 278-652 38-362 (364)
199 KOG1524 WD40 repeat-containing 99.5 2.5E-13 5.4E-18 158.7 20.7 264 241-610 12-283 (737)
200 PF02239 Cytochrom_D1: Cytochr 99.5 4.1E-12 8.9E-17 153.0 30.7 338 258-664 9-356 (369)
201 KOG1523 Actin-related protein 99.5 1.6E-12 3.6E-17 145.3 24.0 258 239-605 6-270 (361)
202 KOG0649 WD40 repeat protein [G 99.5 2E-12 4.3E-17 139.6 23.5 279 244-610 11-313 (325)
203 PRK01742 tolB translocation pr 99.5 1.1E-12 2.3E-17 161.7 24.0 233 264-593 183-426 (429)
204 KOG1240 Protein kinase contain 99.5 2.8E-12 6.1E-17 161.8 27.4 279 312-660 1034-1339(1431)
205 KOG2315 Predicted translation 99.5 1.2E-11 2.7E-16 146.9 30.7 318 243-655 34-390 (566)
206 KOG4497 Uncharacterized conser 99.5 1.1E-12 2.5E-17 146.2 20.4 356 290-740 13-420 (447)
207 KOG0771 Prolactin regulatory e 99.5 2.4E-13 5.2E-18 157.0 15.4 203 247-499 148-354 (398)
208 PRK01742 tolB translocation pr 99.5 1.2E-12 2.6E-17 161.3 21.8 235 306-636 183-426 (429)
209 PF02239 Cytochrom_D1: Cytochr 99.5 5.1E-11 1.1E-15 143.6 34.5 314 228-622 21-356 (369)
210 KOG0771 Prolactin regulatory e 99.5 1.4E-12 3E-17 150.8 17.6 201 289-613 148-354 (398)
211 KOG2110 Uncharacterized conser 99.4 3.9E-11 8.5E-16 136.7 28.0 316 243-656 5-331 (391)
212 KOG1524 WD40 repeat-containing 99.4 6.3E-12 1.4E-16 147.2 21.7 267 325-685 12-281 (737)
213 KOG1272 WD40-repeat-containing 99.4 7.1E-13 1.5E-17 153.6 13.2 278 244-658 130-412 (545)
214 KOG1310 WD40 repeat protein [G 99.4 3.2E-12 6.9E-17 150.0 17.6 187 277-499 42-231 (758)
215 KOG2321 WD40 repeat protein [G 99.4 2.2E-11 4.9E-16 144.1 24.4 298 233-654 42-342 (703)
216 KOG2110 Uncharacterized conser 99.4 5.9E-11 1.3E-15 135.3 26.6 239 328-658 6-251 (391)
217 PRK03629 tolB translocation pr 99.4 7E-11 1.5E-15 145.7 28.1 234 265-592 179-427 (429)
218 KOG2394 WD40 protein DMR-N9 [G 99.4 1.7E-11 3.8E-16 144.3 21.2 198 401-635 182-384 (636)
219 PRK03629 tolB translocation pr 99.4 2.3E-10 5E-15 141.1 31.8 233 308-635 180-427 (429)
220 KOG2314 Translation initiation 99.4 1E-10 2.2E-15 138.2 26.8 353 287-780 212-597 (698)
221 KOG1523 Actin-related protein 99.4 1.7E-11 3.8E-16 137.2 19.0 208 392-658 10-239 (361)
222 PRK04922 tolB translocation pr 99.4 1.2E-10 2.5E-15 144.0 26.7 235 307-635 184-432 (433)
223 KOG2139 WD40 repeat protein [G 99.3 4.3E-10 9.4E-15 127.6 27.7 177 244-455 99-292 (445)
224 COG5354 Uncharacterized protei 99.3 6.3E-10 1.4E-14 131.0 30.0 342 231-658 20-398 (561)
225 PRK05137 tolB translocation pr 99.3 2.9E-10 6.2E-15 140.6 28.5 234 265-592 182-432 (435)
226 PRK04922 tolB translocation pr 99.3 1.6E-10 3.4E-15 142.9 26.1 235 265-592 184-432 (433)
227 PRK02889 tolB translocation pr 99.3 2.4E-10 5.3E-15 140.9 25.9 236 265-592 176-424 (427)
228 PRK02889 tolB translocation pr 99.3 3.2E-10 7E-15 139.8 24.9 240 307-636 176-425 (427)
229 KOG3881 Uncharacterized conser 99.3 1.4E-10 3E-15 133.0 19.6 264 285-635 55-341 (412)
230 KOG2111 Uncharacterized conser 99.3 4E-09 8.7E-14 118.6 30.2 239 246-614 8-257 (346)
231 KOG1912 WD40 repeat protein [G 99.3 7.2E-10 1.6E-14 134.8 25.7 454 243-774 15-572 (1062)
232 KOG2139 WD40 repeat protein [G 99.3 4.1E-10 8.8E-15 127.8 22.1 209 392-654 98-308 (445)
233 KOG1409 Uncharacterized conser 99.3 1.4E-10 3.1E-15 130.9 18.2 334 232-655 13-394 (404)
234 KOG2394 WD40 protein DMR-N9 [G 99.2 1E-10 2.2E-15 137.8 16.7 171 252-454 182-385 (636)
235 KOG1912 WD40 repeat protein [G 99.2 1.4E-09 3E-14 132.4 26.5 394 228-661 40-557 (1062)
236 PRK05137 tolB translocation pr 99.2 1.7E-09 3.6E-14 133.9 27.7 234 307-635 182-432 (435)
237 KOG2315 Predicted translation 99.2 1.6E-08 3.4E-13 121.0 33.7 364 266-779 12-414 (566)
238 KOG1272 WD40-repeat-containing 99.2 3.3E-11 7.1E-16 140.0 10.4 229 330-653 132-360 (545)
239 KOG2111 Uncharacterized conser 99.2 3.3E-09 7.2E-14 119.3 24.5 239 329-658 7-259 (346)
240 KOG1354 Serine/threonine prote 99.2 2.2E-09 4.7E-14 121.3 22.8 284 285-616 25-362 (433)
241 COG5354 Uncharacterized protei 99.2 1.4E-08 3.1E-13 119.9 29.6 362 268-740 15-417 (561)
242 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.4E-08 1.4E-12 115.1 35.2 264 265-663 27-338 (352)
243 TIGR02800 propeller_TolB tol-p 99.2 5.7E-09 1.2E-13 127.9 27.2 233 264-590 169-416 (417)
244 KOG0974 WD-repeat protein WDR6 99.2 5.7E-09 1.2E-13 131.8 27.1 150 249-423 139-289 (967)
245 TIGR03300 assembly_YfgL outer 99.2 3.1E-08 6.7E-13 120.1 32.9 311 255-652 65-376 (377)
246 PF08662 eIF2A: Eukaryotic tra 99.1 1.8E-09 3.9E-14 119.1 19.4 117 540-663 59-186 (194)
247 KOG2314 Translation initiation 99.1 1.1E-08 2.3E-13 121.4 26.4 316 245-654 212-572 (698)
248 KOG0974 WD-repeat protein WDR6 99.1 3.2E-09 6.9E-14 134.0 23.3 199 244-502 88-291 (967)
249 KOG2041 WD40 repeat protein [G 99.1 2.3E-08 5E-13 120.6 29.2 418 244-758 15-463 (1189)
250 KOG3881 Uncharacterized conser 99.1 3.5E-09 7.7E-14 121.7 20.4 271 243-592 55-341 (412)
251 PF08662 eIF2A: Eukaryotic tra 99.1 2.7E-09 5.8E-14 117.7 18.8 148 247-422 9-179 (194)
252 TIGR02800 propeller_TolB tol-p 99.1 2.6E-08 5.5E-13 122.2 27.3 233 307-633 170-416 (417)
253 PRK04792 tolB translocation pr 99.1 2.2E-08 4.8E-13 124.3 26.8 234 266-592 199-446 (448)
254 PRK00178 tolB translocation pr 99.1 3.2E-08 6.9E-13 122.3 27.9 233 266-592 180-427 (430)
255 PF10282 Lactonase: Lactonase, 99.1 5.8E-07 1.3E-11 108.0 37.5 317 258-633 2-345 (345)
256 PF04762 IKI3: IKI3 family; I 99.0 6.2E-07 1.3E-11 119.4 39.8 364 232-657 112-566 (928)
257 KOG1354 Serine/threonine prote 99.0 1.4E-08 3.1E-13 114.8 20.5 272 243-573 25-362 (433)
258 PRK01029 tolB translocation pr 99.0 1.1E-07 2.4E-12 117.4 29.1 249 307-637 165-426 (428)
259 PF10282 Lactonase: Lactonase, 99.0 7.8E-07 1.7E-11 106.9 35.6 283 300-659 2-328 (345)
260 PRK04792 tolB translocation pr 99.0 5E-08 1.1E-12 121.2 25.3 234 308-635 199-446 (448)
261 PRK00178 tolB translocation pr 99.0 9.9E-08 2.2E-12 117.9 27.5 235 308-636 180-428 (430)
262 PF04762 IKI3: IKI3 family; I 99.0 1.2E-06 2.7E-11 116.6 38.6 344 245-657 23-458 (928)
263 KOG2321 WD40 repeat protein [G 99.0 5.7E-08 1.2E-12 115.9 22.6 257 237-571 86-344 (703)
264 COG4946 Uncharacterized protei 98.9 1.6E-06 3.6E-11 101.6 33.2 141 537-679 356-506 (668)
265 PRK01029 tolB translocation pr 98.9 3E-07 6.5E-12 113.6 29.2 242 265-593 165-425 (428)
266 KOG4190 Uncharacterized conser 98.9 4.2E-09 9.2E-14 123.5 12.0 174 236-426 728-910 (1034)
267 KOG2041 WD40 repeat protein [G 98.9 1.3E-07 2.7E-12 114.5 23.5 293 284-655 13-337 (1189)
268 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.6E-06 3.4E-11 103.4 32.9 274 230-621 34-338 (352)
269 KOG1409 Uncharacterized conser 98.9 5.6E-08 1.2E-12 110.3 18.8 309 243-613 68-394 (404)
270 KOG4547 WD40 repeat-containing 98.9 7.8E-08 1.7E-12 116.0 20.2 185 403-653 69-268 (541)
271 KOG4547 WD40 repeat-containing 98.9 6.8E-08 1.5E-12 116.5 19.5 169 252-454 2-195 (541)
272 KOG0309 Conserved WD40 repeat- 98.9 2.7E-08 5.8E-13 120.8 15.4 288 243-614 24-340 (1081)
273 COG4946 Uncharacterized protei 98.8 7.8E-06 1.7E-10 96.1 33.8 167 551-740 331-506 (668)
274 TIGR03300 assembly_YfgL outer 98.8 2.5E-06 5.4E-11 103.6 31.0 267 254-610 104-376 (377)
275 KOG1064 RAVE (regulator of V-A 98.8 2.2E-08 4.7E-13 130.9 12.6 226 297-623 2180-2408(2439)
276 KOG0280 Uncharacterized conser 98.8 5.4E-07 1.2E-11 100.9 21.2 277 306-658 45-336 (339)
277 KOG1064 RAVE (regulator of V-A 98.8 6.6E-08 1.4E-12 126.6 14.9 192 239-500 2204-2399(2439)
278 PRK11138 outer membrane biogen 98.8 9.2E-06 2E-10 99.4 33.1 309 255-654 69-393 (394)
279 PLN02919 haloacid dehalogenase 98.7 4.9E-06 1.1E-10 112.8 33.2 116 543-659 742-892 (1057)
280 KOG0309 Conserved WD40 repeat- 98.7 1.4E-07 3E-12 114.7 15.5 233 327-640 24-260 (1081)
281 KOG0280 Uncharacterized conser 98.7 2.3E-06 5E-11 95.9 22.3 271 263-616 44-336 (339)
282 KOG1832 HIV-1 Vpr-binding prot 98.7 3.9E-08 8.4E-13 120.9 8.0 201 386-664 1095-1300(1516)
283 PLN02919 haloacid dehalogenase 98.6 1.2E-05 2.7E-10 109.0 32.0 275 248-574 572-892 (1057)
284 PRK04043 tolB translocation pr 98.6 1.3E-05 2.8E-10 98.8 27.0 201 542-757 189-402 (419)
285 COG2706 3-carboxymuconate cycl 98.6 5.1E-05 1.1E-09 88.0 29.0 277 241-591 37-345 (346)
286 COG2706 3-carboxymuconate cycl 98.5 0.00017 3.7E-09 83.8 32.4 270 306-655 15-321 (346)
287 COG5170 CDC55 Serine/threonine 98.5 2.5E-06 5.4E-11 95.7 16.7 281 284-612 25-366 (460)
288 KOG4190 Uncharacterized conser 98.5 6.5E-07 1.4E-11 105.6 11.0 290 278-651 728-1032(1034)
289 KOG1832 HIV-1 Vpr-binding prot 98.4 3.2E-07 6.8E-12 113.2 7.1 166 230-423 1088-1256(1516)
290 COG5170 CDC55 Serine/threonine 98.4 3E-06 6.6E-11 95.0 13.0 237 391-657 25-311 (460)
291 KOG0882 Cyclophilin-related pe 98.4 8E-06 1.7E-10 95.8 16.3 290 242-578 8-313 (558)
292 KOG3914 WD repeat protein WDR4 98.4 2.6E-06 5.6E-11 99.2 12.2 122 243-369 110-232 (390)
293 KOG4532 WD40-like repeat conta 98.4 9.4E-05 2E-09 82.3 23.6 245 265-595 52-315 (344)
294 KOG3914 WD repeat protein WDR4 98.3 8.6E-06 1.9E-10 95.0 16.1 160 288-504 65-228 (390)
295 PF07433 DUF1513: Protein of u 98.3 0.0002 4.3E-09 83.3 26.9 100 246-348 7-116 (305)
296 PF15492 Nbas_N: Neuroblastoma 98.3 0.00012 2.5E-09 83.0 24.2 148 248-412 2-167 (282)
297 KOG4532 WD40-like repeat conta 98.3 4.6E-05 1E-09 84.7 20.3 245 254-570 83-331 (344)
298 PF15492 Nbas_N: Neuroblastoma 98.3 0.00025 5.5E-09 80.3 26.4 215 392-661 43-265 (282)
299 PF08450 SGL: SMP-30/Gluconola 98.3 0.00037 8E-09 79.6 27.9 230 290-601 4-244 (246)
300 PRK11138 outer membrane biogen 98.3 0.00038 8.1E-09 85.4 29.7 267 255-612 120-393 (394)
301 KOG4714 Nucleoporin [Nuclear s 98.3 1.3E-05 2.9E-10 88.6 14.4 111 542-653 181-316 (319)
302 PRK04043 tolB translocation pr 98.2 0.00026 5.7E-09 87.4 27.4 226 308-628 170-414 (419)
303 PF00400 WD40: WD domain, G-be 98.2 3.6E-06 7.8E-11 67.6 6.7 38 234-271 2-39 (39)
304 PF13360 PQQ_2: PQQ-like domai 98.2 0.00042 9.2E-09 78.0 25.9 139 263-423 1-141 (238)
305 KOG0882 Cyclophilin-related pe 98.2 6.6E-05 1.4E-09 88.3 19.2 296 284-652 8-369 (558)
306 PF13360 PQQ_2: PQQ-like domai 98.2 0.00032 7E-09 78.9 23.8 222 351-660 2-235 (238)
307 KOG4714 Nucleoporin [Nuclear s 98.2 3.8E-05 8.3E-10 85.1 15.2 196 246-500 39-255 (319)
308 KOG1920 IkappaB kinase complex 98.2 0.0023 5.1E-08 83.6 33.3 260 285-612 68-364 (1265)
309 PF08450 SGL: SMP-30/Gluconola 98.1 0.0016 3.4E-08 74.4 28.1 194 248-499 4-213 (246)
310 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00083 1.8E-08 81.2 26.6 304 252-644 1-346 (353)
311 cd00216 PQQ_DH Dehydrogenases 98.1 0.0045 9.6E-08 78.3 33.4 315 255-638 61-450 (488)
312 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0099 2.1E-07 66.5 30.9 109 255-368 23-131 (354)
313 KOG2695 WD40 repeat protein [G 98.0 1.4E-05 3E-10 91.3 9.3 155 408-624 228-387 (425)
314 PF07433 DUF1513: Protein of u 98.0 0.00068 1.5E-08 78.9 21.9 219 543-767 7-260 (305)
315 PF00400 WD40: WD domain, G-be 98.0 1.8E-05 4E-10 63.5 6.5 39 275-313 1-39 (39)
316 KOG1645 RING-finger-containing 98.0 0.00031 6.7E-09 82.1 18.4 94 267-363 175-269 (463)
317 KOG1275 PAB-dependent poly(A) 97.9 0.00011 2.4E-09 92.6 15.2 169 229-421 163-341 (1118)
318 KOG2695 WD40 repeat protein [G 97.9 3.9E-05 8.4E-10 87.8 9.3 126 539-665 251-386 (425)
319 KOG1920 IkappaB kinase complex 97.9 0.0087 1.9E-07 78.5 30.6 265 328-654 69-364 (1265)
320 PRK02888 nitrous-oxide reducta 97.8 0.0015 3.3E-08 82.1 22.9 105 548-656 284-405 (635)
321 KOG1275 PAB-dependent poly(A) 97.8 0.0003 6.4E-09 88.9 16.4 195 254-568 146-340 (1118)
322 KOG2066 Vacuolar assembly/sort 97.8 0.00042 9E-09 87.0 17.5 149 243-424 39-189 (846)
323 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.058 1.3E-06 68.8 36.6 110 255-370 69-199 (527)
324 PF06433 Me-amine-dh_H: Methyl 97.8 0.0039 8.4E-08 73.5 23.8 281 265-623 17-330 (342)
325 KOG1645 RING-finger-containing 97.8 0.00065 1.4E-08 79.5 17.2 93 309-424 175-268 (463)
326 KOG3621 WD40 repeat-containing 97.8 0.0048 1E-07 77.0 24.8 117 242-361 32-155 (726)
327 PF06433 Me-amine-dh_H: Methyl 97.7 0.011 2.4E-07 69.8 26.2 276 307-663 17-328 (342)
328 KOG2066 Vacuolar assembly/sort 97.7 0.0013 2.8E-08 82.8 18.9 145 254-422 82-233 (846)
329 cd00216 PQQ_DH Dehydrogenases 97.7 0.018 4E-07 72.7 29.4 104 554-662 303-431 (488)
330 KOG2114 Vacuolar assembly/sort 97.7 0.0048 1E-07 78.3 23.1 82 539-622 170-252 (933)
331 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.039 8.4E-07 67.7 29.0 91 534-624 301-409 (415)
332 PF11768 DUF3312: Protein of u 97.6 0.033 7.1E-07 69.1 28.2 114 541-657 206-331 (545)
333 KOG3617 WD40 and TPR repeat-co 97.6 0.0027 5.8E-08 79.5 18.6 108 248-360 20-131 (1416)
334 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.086 1.9E-06 59.3 28.3 106 254-362 62-167 (354)
335 PF04841 Vps16_N: Vps16, N-ter 97.5 0.071 1.5E-06 66.0 31.2 107 540-664 216-323 (410)
336 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.01 2.2E-07 71.8 23.5 306 294-679 1-345 (353)
337 PF14583 Pectate_lyase22: Olig 97.5 0.13 2.8E-06 62.1 30.5 95 271-368 16-118 (386)
338 KOG2114 Vacuolar assembly/sort 97.4 0.015 3.3E-07 74.0 23.4 178 245-454 27-225 (933)
339 KOG1008 Uncharacterized conser 97.4 0.00015 3.2E-09 88.7 5.7 198 245-500 58-276 (783)
340 PF11768 DUF3312: Protein of u 97.4 0.0028 6.2E-08 78.1 15.5 74 241-316 257-330 (545)
341 KOG3617 WD40 and TPR repeat-co 97.3 0.0037 8.1E-08 78.3 15.5 70 246-315 62-131 (1416)
342 PF08596 Lgl_C: Lethal giant l 97.3 0.041 8.9E-07 67.5 24.6 306 245-653 3-333 (395)
343 KOG1897 Damage-specific DNA bi 97.3 0.73 1.6E-05 60.3 35.5 138 543-684 777-936 (1096)
344 COG3391 Uncharacterized conser 97.2 0.41 8.9E-06 58.7 31.6 286 267-636 13-309 (381)
345 PF04053 Coatomer_WDAD: Coatom 97.1 0.054 1.2E-06 67.4 23.1 145 239-421 28-172 (443)
346 PF06977 SdiA-regulated: SdiA- 97.1 0.14 3E-06 59.0 24.2 205 392-652 21-247 (248)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.25 5.4E-06 63.1 29.0 56 605-661 441-496 (527)
348 KOG3621 WD40 repeat-containing 97.0 0.0061 1.3E-07 76.1 13.7 156 540-697 33-195 (726)
349 PF00780 CNH: CNH domain; Int 97.0 0.26 5.6E-06 57.1 26.0 142 253-424 5-167 (275)
350 PF14583 Pectate_lyase22: Olig 96.9 0.24 5.3E-06 59.8 25.0 108 231-338 18-133 (386)
351 COG0823 TolB Periplasmic compo 96.9 0.065 1.4E-06 66.4 20.8 132 266-422 174-314 (425)
352 KOG1008 Uncharacterized conser 96.8 0.00051 1.1E-08 84.2 2.1 205 392-655 56-275 (783)
353 smart00320 WD40 WD40 repeats. 96.8 0.0031 6.6E-08 47.6 5.8 39 233-271 2-40 (40)
354 COG0823 TolB Periplasmic compo 96.8 0.089 1.9E-06 65.2 21.0 207 308-600 174-387 (425)
355 PF02897 Peptidase_S9_N: Proly 96.8 0.58 1.3E-05 57.8 28.3 254 288-619 126-410 (414)
356 PF04841 Vps16_N: Vps16, N-ter 96.7 1.4 3E-05 54.7 30.7 65 249-315 34-109 (410)
357 PF08553 VID27: VID27 cytoplas 96.7 0.072 1.6E-06 69.8 19.9 143 254-421 492-646 (794)
358 PF02897 Peptidase_S9_N: Proly 96.6 0.82 1.8E-05 56.5 28.1 250 330-660 126-409 (414)
359 PRK02888 nitrous-oxide reducta 96.5 0.11 2.3E-06 66.1 19.5 160 251-423 200-405 (635)
360 COG3391 Uncharacterized conser 96.5 1.3 2.8E-05 54.4 28.8 203 393-661 74-289 (381)
361 TIGR03074 PQQ_membr_DH membran 96.4 6 0.00013 52.8 35.4 112 255-370 194-354 (764)
362 PF06977 SdiA-regulated: SdiA- 96.4 0.39 8.6E-06 55.3 21.6 171 236-422 14-201 (248)
363 PF00780 CNH: CNH domain; Int 96.4 1.7 3.8E-05 50.3 27.6 256 295-624 5-266 (275)
364 smart00320 WD40 WD40 repeats. 96.4 0.0097 2.1E-07 44.7 6.0 39 275-313 2-40 (40)
365 KOG4640 Anaphase-promoting com 96.3 0.014 3.1E-07 72.2 10.0 93 244-337 21-115 (665)
366 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.23 5E-06 49.8 15.8 104 246-356 2-110 (111)
367 PF08596 Lgl_C: Lethal giant l 96.2 0.16 3.5E-06 62.4 18.0 253 329-661 3-296 (395)
368 COG3386 Gluconolactonase [Carb 96.1 1.3 2.9E-05 52.7 24.3 104 540-645 162-275 (307)
369 PF04053 Coatomer_WDAD: Coatom 95.9 1.2 2.6E-05 55.6 23.8 128 281-455 28-156 (443)
370 PRK13616 lipoprotein LpqB; Pro 95.8 0.29 6.2E-06 63.2 18.5 152 244-421 350-524 (591)
371 KOG4640 Anaphase-promoting com 95.6 0.033 7.1E-07 69.1 8.6 78 583-662 21-99 (665)
372 KOG2395 Protein involved in va 95.5 0.51 1.1E-05 58.0 17.7 137 259-421 350-499 (644)
373 PF07995 GSDH: Glucose / Sorbo 95.4 3.7 8E-05 49.5 25.1 73 577-650 248-330 (331)
374 COG3386 Gluconolactonase [Carb 95.3 4.4 9.6E-05 48.3 25.0 233 292-602 31-275 (307)
375 PRK10115 protease 2; Provision 95.3 15 0.00034 48.7 33.3 113 244-360 127-255 (686)
376 COG3490 Uncharacterized protei 95.3 3.7 8.1E-05 47.4 22.5 256 328-653 68-346 (366)
377 PRK13616 lipoprotein LpqB; Pro 95.3 1.4 3E-05 57.1 22.0 116 284-418 348-472 (591)
378 PF03178 CPSF_A: CPSF A subuni 95.3 1.2 2.6E-05 53.1 20.4 142 255-422 42-202 (321)
379 PF03178 CPSF_A: CPSF A subuni 95.2 1.2 2.6E-05 53.2 20.1 216 353-652 3-262 (321)
380 KOG2079 Vacuolar assembly/sort 95.2 0.034 7.5E-07 72.4 7.2 102 254-360 98-203 (1206)
381 PF08553 VID27: VID27 cytoplas 95.2 1 2.2E-05 59.5 20.5 150 297-499 493-647 (794)
382 PF14783 BBS2_Mid: Ciliary BBS 95.1 0.9 2E-05 45.7 15.1 101 543-651 2-110 (111)
383 KOG2079 Vacuolar assembly/sort 94.7 0.19 4E-06 66.0 11.5 71 242-314 129-202 (1206)
384 KOG1898 Splicing factor 3b, su 94.5 26 0.00057 47.0 32.3 74 284-357 581-668 (1205)
385 KOG1897 Damage-specific DNA bi 94.4 26 0.00057 46.7 34.1 118 542-659 489-619 (1096)
386 PF14870 PSII_BNR: Photosynthe 94.4 8.9 0.00019 45.7 23.8 160 282-496 141-301 (302)
387 PHA02713 hypothetical protein; 93.9 2.1 4.6E-05 55.3 19.1 66 550-618 462-538 (557)
388 COG3490 Uncharacterized protei 93.9 2.9 6.2E-05 48.3 17.3 99 247-348 71-179 (366)
389 PF05096 Glu_cyclase_2: Glutam 93.8 3.2 7E-05 48.1 18.1 170 232-424 32-205 (264)
390 COG3204 Uncharacterized protei 93.7 3.4 7.4E-05 48.1 17.9 163 245-422 45-210 (316)
391 KOG3630 Nuclear pore complex, 93.7 2.9 6.4E-05 55.7 19.1 146 392-592 100-253 (1405)
392 PF14870 PSII_BNR: Photosynthe 93.6 3.1 6.8E-05 49.4 18.1 156 240-419 141-301 (302)
393 PF07995 GSDH: Glucose / Sorbo 93.5 22 0.00048 42.9 28.2 102 246-352 4-135 (331)
394 PF10647 Gmad1: Lipoprotein Lp 93.5 2.3 5E-05 49.3 16.7 153 245-414 25-187 (253)
395 PHA02713 hypothetical protein; 93.4 3.4 7.3E-05 53.4 19.7 32 551-582 512-545 (557)
396 KOG4499 Ca2+-binding protein R 93.4 11 0.00024 42.6 20.4 46 546-591 217-262 (310)
397 KOG2395 Protein involved in va 93.2 2.6 5.6E-05 52.2 16.7 152 296-499 344-500 (644)
398 KOG2444 WD40 repeat protein [G 93.1 0.17 3.7E-06 56.4 6.3 103 482-613 71-177 (238)
399 KOG3630 Nuclear pore complex, 93.0 1 2.2E-05 59.8 13.7 142 541-683 101-265 (1405)
400 KOG4441 Proteins containing BT 92.9 4.4 9.5E-05 52.5 19.5 63 550-615 474-548 (571)
401 COG3204 Uncharacterized protei 92.9 9.1 0.0002 44.8 19.6 171 239-422 81-263 (316)
402 PF10168 Nup88: Nuclear pore c 92.9 16 0.00036 48.4 24.8 80 285-365 84-184 (717)
403 KOG2444 WD40 repeat protein [G 92.6 0.28 6E-06 54.8 7.0 104 552-655 70-177 (238)
404 PF10647 Gmad1: Lipoprotein Lp 92.5 24 0.00053 40.9 23.1 146 287-455 25-177 (253)
405 KOG4441 Proteins containing BT 92.4 6 0.00013 51.3 19.8 103 550-657 426-548 (571)
406 PF10168 Nup88: Nuclear pore c 92.3 20 0.00043 47.7 24.4 90 391-503 83-183 (717)
407 TIGR03074 PQQ_membr_DH membran 91.7 19 0.00041 48.3 23.5 103 561-663 335-485 (764)
408 PRK13684 Ycf48-like protein; P 91.5 10 0.00022 45.9 19.3 153 243-421 172-330 (334)
409 PF12894 Apc4_WD40: Anaphase-p 90.4 0.7 1.5E-05 39.4 5.6 34 243-277 11-44 (47)
410 PF05096 Glu_cyclase_2: Glutam 90.3 10 0.00023 44.0 16.7 112 543-659 47-161 (264)
411 PF12894 Apc4_WD40: Anaphase-p 89.9 0.9 2E-05 38.7 5.9 35 285-320 11-45 (47)
412 KOG2280 Vacuolar assembly/sort 89.4 43 0.00093 43.7 22.2 51 306-361 63-113 (829)
413 PF14727 PHTB1_N: PTHB1 N-term 89.3 67 0.0015 40.1 29.2 145 254-421 36-203 (418)
414 TIGR03118 PEPCTERM_chp_1 conse 89.3 54 0.0012 38.9 24.0 75 549-624 209-290 (336)
415 PF05694 SBP56: 56kDa selenium 89.0 7.3 0.00016 48.0 14.8 172 252-423 138-343 (461)
416 PLN00033 photosystem II stabil 89.0 25 0.00055 43.5 20.0 149 244-419 239-396 (398)
417 PF15390 DUF4613: Domain of un 88.1 6.3 0.00014 49.7 13.6 120 537-657 53-188 (671)
418 PF12234 Rav1p_C: RAVE protein 88.0 8.9 0.00019 49.8 15.5 117 238-359 24-155 (631)
419 PF08728 CRT10: CRT10; InterP 87.8 20 0.00043 47.1 18.5 113 540-654 100-245 (717)
420 KOG1916 Nuclear protein, conta 87.6 0.93 2E-05 58.6 6.4 121 244-365 181-328 (1283)
421 PRK13684 Ycf48-like protein; P 87.6 74 0.0016 38.5 28.3 110 540-654 214-330 (334)
422 KOG1916 Nuclear protein, conta 87.1 0.17 3.7E-06 64.9 -0.2 153 306-499 110-265 (1283)
423 TIGR02604 Piru_Ver_Nterm putat 87.1 13 0.00028 45.5 15.9 95 244-340 14-136 (367)
424 KOG4499 Ca2+-binding protein R 87.1 28 0.00061 39.5 16.5 174 257-454 73-264 (310)
425 PRK10115 protease 2; Provision 86.6 1.3E+02 0.0028 40.2 30.4 94 563-658 294-397 (686)
426 PHA03098 kelch-like protein; P 86.5 17 0.00037 46.7 17.3 64 550-616 388-467 (534)
427 PHA03098 kelch-like protein; P 86.3 14 0.00031 47.3 16.5 64 253-318 293-369 (534)
428 PF15390 DUF4613: Domain of un 86.1 12 0.00027 47.2 14.6 133 441-615 54-188 (671)
429 COG5167 VID27 Protein involved 85.4 31 0.00068 42.9 17.1 141 253-422 477-632 (776)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 84.7 6.3 0.00014 48.9 11.4 93 232-324 296-407 (415)
431 TIGR03118 PEPCTERM_chp_1 conse 84.7 95 0.0021 37.0 27.1 115 246-360 25-170 (336)
432 KOG1898 Splicing factor 3b, su 83.9 1.8E+02 0.004 39.7 26.2 75 243-317 582-675 (1205)
433 COG5276 Uncharacterized conser 83.5 1E+02 0.0022 36.4 29.3 160 239-424 37-201 (370)
434 KOG2377 Uncharacterized conser 83.3 89 0.0019 38.8 19.4 135 291-455 28-165 (657)
435 KOG2280 Vacuolar assembly/sort 82.0 39 0.00084 44.1 16.7 166 233-423 73-247 (829)
436 TIGR02604 Piru_Ver_Nterm putat 81.2 32 0.00069 42.1 15.7 100 542-644 15-142 (367)
437 PHA02790 Kelch-like protein; P 80.5 34 0.00075 43.5 16.2 104 254-364 271-388 (480)
438 PF05694 SBP56: 56kDa selenium 80.2 26 0.00057 43.4 14.0 142 264-411 221-392 (461)
439 KOG2247 WD40 repeat-containing 79.7 0.95 2.1E-05 55.3 1.8 134 394-592 36-169 (615)
440 KOG2727 Rab3 GTPase-activating 79.6 11 0.00024 49.5 10.9 81 541-623 322-416 (1244)
441 PF12234 Rav1p_C: RAVE protein 78.7 28 0.0006 45.4 14.4 110 543-654 32-155 (631)
442 PF08801 Nucleoporin_N: Nup133 78.4 47 0.001 41.4 16.3 164 244-422 27-219 (422)
443 TIGR03606 non_repeat_PQQ dehyd 77.8 2.1E+02 0.0045 36.3 32.0 56 284-339 28-90 (454)
444 PF08728 CRT10: CRT10; InterP 77.1 21 0.00045 47.0 12.6 113 246-359 103-245 (717)
445 PF11725 AvrE: Pathogenicity f 76.6 92 0.002 44.3 18.6 367 241-653 360-770 (1774)
446 KOG4460 Nuclear pore complex, 74.7 86 0.0019 39.5 16.0 98 540-660 103-203 (741)
447 PF07569 Hira: TUP1-like enhan 74.5 14 0.0003 42.0 9.2 64 251-315 18-95 (219)
448 PF10313 DUF2415: Uncharacteri 73.7 11 0.00023 31.8 5.7 32 244-275 1-35 (43)
449 TIGR03606 non_repeat_PQQ dehyd 73.3 1E+02 0.0022 39.0 16.9 112 535-646 24-166 (454)
450 PF14761 HPS3_N: Hermansky-Pud 72.9 50 0.0011 37.4 12.6 102 256-362 29-165 (215)
451 PF14781 BBS2_N: Ciliary BBSom 72.9 66 0.0014 33.8 12.6 114 247-363 2-128 (136)
452 PF14761 HPS3_N: Hermansky-Pud 72.8 74 0.0016 36.0 13.9 104 482-615 29-165 (215)
453 PF14727 PHTB1_N: PTHB1 N-term 72.4 2.6E+02 0.0057 35.0 29.3 59 481-569 145-203 (418)
454 PF12657 TFIIIC_delta: Transcr 72.4 17 0.00036 39.7 8.9 30 627-656 87-122 (173)
455 PF10313 DUF2415: Uncharacteri 72.1 9.2 0.0002 32.1 5.0 31 626-656 1-34 (43)
456 COG3823 Glutamine cyclotransfe 71.9 1.8E+02 0.0038 33.0 16.1 110 254-369 55-167 (262)
457 PHA02790 Kelch-like protein; P 71.7 1.1E+02 0.0024 38.9 17.3 99 550-656 361-471 (480)
458 PF13449 Phytase-like: Esteras 70.6 1.7E+02 0.0037 35.2 17.8 103 243-349 19-165 (326)
459 KOG1983 Tomosyn and related SN 69.3 4.7E+02 0.01 36.6 24.8 30 244-273 36-65 (993)
460 COG5290 IkappaB kinase complex 68.8 1.4E+02 0.0031 39.3 16.5 65 242-313 75-140 (1243)
461 PF12657 TFIIIC_delta: Transcr 67.2 27 0.00059 38.0 9.1 33 328-360 86-121 (173)
462 KOG4460 Nuclear pore complex, 66.8 71 0.0015 40.2 13.0 30 391-420 102-131 (741)
463 KOG2247 WD40 repeat-containing 66.7 1 2.2E-05 55.1 -2.2 135 288-455 37-171 (615)
464 PRK05560 DNA gyrase subunit A; 66.4 4.8E+02 0.01 35.7 28.5 117 294-422 495-622 (805)
465 KOG3616 Selective LIM binding 66.0 53 0.0012 42.4 12.0 72 243-318 14-85 (1636)
466 PF10214 Rrn6: RNA polymerase 65.3 4.9E+02 0.011 35.4 26.2 71 542-614 205-277 (765)
467 PLN00033 photosystem II stabil 64.3 3.7E+02 0.008 33.6 34.0 66 541-610 328-396 (398)
468 COG3292 Predicted periplasmic 64.1 4.2E+02 0.0092 34.2 20.9 152 242-420 163-316 (671)
469 PF11635 Med16: Mediator compl 63.8 2.2E+02 0.0048 38.5 18.4 36 391-426 258-293 (753)
470 PF07569 Hira: TUP1-like enhan 63.1 40 0.00086 38.4 9.7 64 594-658 21-98 (219)
471 KOG1900 Nuclear pore complex, 63.0 80 0.0017 43.8 13.6 155 262-423 96-273 (1311)
472 KOG2377 Uncharacterized conser 62.7 58 0.0013 40.2 11.1 117 242-362 65-187 (657)
473 PF05935 Arylsulfotrans: Aryls 62.5 4.1E+02 0.0089 33.9 19.6 161 255-423 115-302 (477)
474 PF10214 Rrn6: RNA polymerase 60.3 1.7E+02 0.0037 39.6 16.5 125 234-362 133-278 (765)
475 COG1520 FOG: WD40-like repeat 59.5 1.9E+02 0.004 35.4 15.5 148 481-660 68-222 (370)
476 PF11715 Nup160: Nucleoporin N 58.6 29 0.00063 44.7 8.7 73 253-325 156-258 (547)
477 PF02333 Phytase: Phytase; In 56.1 4.8E+02 0.01 32.3 21.4 196 253-500 66-291 (381)
478 PF07676 PD40: WD40-like Beta 56.1 34 0.00073 27.3 5.6 35 618-652 1-38 (39)
479 PRK13613 lipoprotein LpqB; Pro 54.4 6.4E+02 0.014 33.3 19.7 163 241-421 359-536 (599)
480 TIGR02276 beta_rpt_yvtn 40-res 53.7 40 0.00088 27.0 5.8 41 592-633 1-41 (42)
481 TIGR02276 beta_rpt_yvtn 40-res 53.5 54 0.0012 26.2 6.5 40 253-293 1-41 (42)
482 COG4257 Vgb Streptogramin lyas 52.5 4.6E+02 0.01 31.0 23.2 260 289-643 65-334 (353)
483 COG3292 Predicted periplasmic 52.0 6.5E+02 0.014 32.6 18.4 71 284-361 163-234 (671)
484 PF11715 Nup160: Nucleoporin N 52.0 66 0.0014 41.5 10.3 41 541-581 215-259 (547)
485 PF10433 MMS1_N: Mono-function 49.4 6.7E+02 0.015 32.0 22.7 106 252-358 219-340 (504)
486 smart00036 CNH Domain found in 48.8 5.4E+02 0.012 30.7 29.3 59 254-315 12-73 (302)
487 KOG1900 Nuclear pore complex, 47.7 1.4E+02 0.003 41.6 12.2 34 538-571 240-273 (1311)
488 PF03022 MRJP: Major royal jel 47.4 3.3E+02 0.0071 32.3 14.3 172 245-423 2-216 (287)
489 PF13449 Phytase-like: Esteras 46.9 5.9E+02 0.013 30.6 22.9 62 537-599 143-230 (326)
490 KOG4659 Uncharacterized conser 46.3 1.1E+03 0.024 33.6 31.9 23 538-560 659-681 (1899)
491 PF08513 LisH: LisH; InterPro 46.0 23 0.00051 26.6 2.8 25 51-75 2-26 (27)
492 PRK13615 lipoprotein LpqB; Pro 45.8 8.2E+02 0.018 32.0 20.0 158 247-422 337-502 (557)
493 PF12768 Rax2: Cortical protei 45.6 1.3E+02 0.0028 35.7 10.4 94 264-359 15-122 (281)
494 PF14781 BBS2_N: Ciliary BBSom 44.3 4.1E+02 0.009 28.1 12.5 105 547-654 5-124 (136)
495 KOG1983 Tomosyn and related SN 43.2 2.1E+02 0.0046 39.9 13.3 31 541-571 36-66 (993)
496 COG5276 Uncharacterized conser 42.3 6.8E+02 0.015 30.0 26.9 151 243-423 86-242 (370)
497 PRK14131 N-acetylneuraminic ac 41.8 7.4E+02 0.016 30.3 21.4 12 402-413 138-149 (376)
498 TIGR03548 mutarot_permut cycli 41.7 6.7E+02 0.015 29.8 16.2 180 403-645 72-312 (323)
499 COG3823 Glutamine cyclotransfe 39.8 5.1E+02 0.011 29.6 12.9 102 551-655 55-158 (262)
500 PF10395 Utp8: Utp8 family; I 39.7 5.4E+02 0.012 34.1 15.2 160 243-422 129-305 (670)
No 1
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=100.00 E-value=6.5e-96 Score=867.80 Aligned_cols=618 Identities=63% Similarity=0.972 Sum_probs=521.9
Q ss_pred cchhHHHHHHHHHhccCcchhHHHHHHHHHHhhcCChhhHHHHHhhcCCCCCCCCCCCccchhcHHHHHHHCCCCChHHH
Q 000454 47 VDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHL 126 (1491)
Q Consensus 47 ~~~~e~~flI~hfL~~gp~~~aa~~L~~el~~~~~Lp~r~~~Wle~l~l~~~~~~~~G~~~~~~~~~L~~~~~~i~~~~L 126 (1491)
+|++|+||||.|||+.|||.+++++|+.|++++++||.|+++|. +..+...++.|+..|+||.++||
T Consensus 13 l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W~-------------sn~~~dd~eslvls~~hI~kdhl 79 (1113)
T KOG0644|consen 13 LDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDWE-------------SNSGNDDGESLVLSYKHIAKDHL 79 (1113)
T ss_pred cchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCccccccc-------------cCCCCcccceeeccccccchHHH
Confidence 68999999999999999999999999999999999999999994 44555566777777999999999
Q ss_pred HHHHHHHHHccCCCcccccCCCCCC---CCcccccccCCcccccccccccCCCccCCCCCCCCCCCCCcccccccccccc
Q 000454 127 VKLLKQLIINTSSPSRAMIGGDAPN---AADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREI 203 (1491)
Q Consensus 127 l~~l~r~i~~~~~~i~~~~~~~~P~---~~~vsaLlg~g~~SLl~~~~~~~~~~~~~p~~~~r~p~~h~d~V~~l~~r~~ 203 (1491)
|++|+||+.-. ..+++|. ++.|++|||+|+|||++....+... +.++..++||+||++||+++.++..
T Consensus 80 l~i~kqlv~~~-------d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~--~~~~s~~~~~h~~~~~~~~~sl~s~ 150 (1113)
T KOG0644|consen 80 LQILKQLVPML-------DKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHT--VWKGSAFRWPHMHADQVRGVSLRSI 150 (1113)
T ss_pred HHHHHHhccCc-------CCCCCcceeeeecccchhcchhHHHHhhhhhcccc--cccccccccccccCcccccceeccC
Confidence 99999996322 2345776 8899999999999999998877644 5566899999999999999999999
Q ss_pred cCccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 000454 204 GGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 283 (1491)
Q Consensus 204 Gg~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g 283 (1491)
|++|..|++++++.++|+.+++|..++++++.++.|.||.++|+|++|+..|.+|+||++|..|+||.++++.++..++|
T Consensus 151 ~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG 230 (1113)
T KOG0644|consen 151 GGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG 230 (1113)
T ss_pred CcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
|.+.|+.++.+.++.++|+++.|..|+||.+.++.++.++.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r--- 300 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR--- 300 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc-------ccCCCCCceEecccc---
Confidence 9999999999999999999999999999999999999999999999999999995 378899999999998
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
+...++.|.+.... ....+.++.|-..+.-+++|+.|+....|.+.. +..+.
T Consensus 301 ~~~~~y~prp~~~~-------------~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~---------------l~~~~ 352 (1113)
T KOG0644|consen 301 LEPRIYVPRPLKFT-------------EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ---------------LAWRS 352 (1113)
T ss_pred ccccccCCCCCCcc-------------cccceeeeeccccccccccccCCcccccchhhH---------------hhhhc
Confidence 34444444433222 223455556666666666776666665554421 01111
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
..+ .+++.+.|
T Consensus 353 ~~l------------------------------------if~t~ssd--------------------------------- 363 (1113)
T KOG0644|consen 353 NLL------------------------------------IFVTRSSD--------------------------------- 363 (1113)
T ss_pred cce------------------------------------EEEecccc---------------------------------
Confidence 000 11111110
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~ 603 (1491)
-..+.+++-.+..+++|++.+|.+++.+.+|...++.+.+||+++++..++++
T Consensus 364 ---------------------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 364 ---------------------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred ---------------------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 01355666678889999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCC
Q 000454 604 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGN 683 (1491)
Q Consensus 604 DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~ 683 (1491)
||.+.|||+..|.+++.+..+++.+.+.+||+||+.++..+..|+++|+.++.++.+...++.+||..||++|+.+.+|+
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplirdTn~~ 496 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIRDTNGY 496 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeecCcccccccccch
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCccccccC
Q 000454 684 VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDP 763 (1491)
Q Consensus 684 vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~liep 763 (1491)
|+|++||+.|| .++++++|+..++|||++||+++|+++++++ ++++.|
T Consensus 497 vldqeTq~~ph-~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~-------------------------------dh~mp~ 544 (1113)
T KOG0644|consen 497 VLDQETQLAPH-RNPPDFLCDSDMIPHPEPYQTLFQGRRLSAL-------------------------------DHLMPP 544 (1113)
T ss_pred hhhhHhhhccc-cCCCCceeccCCCcCCchhhhcccccccchh-------------------------------hhcCCc
Confidence 99999999999 5669999999999999999999988775554 334444
Q ss_pred CcccccccccccCCcCCCCCCCccccccccccccccCCCCCCCCCCCCCCcCCcCCCCCCCCcchhhHhhhhhhhhheec
Q 000454 764 LPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMT 843 (1491)
Q Consensus 764 lp~~i~~~~W~P~~ev~s~d~~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1491)
+ ++++.|+|+|+.+|++++++++|+-+.+++
T Consensus 545 l-~fia~~~~E~e~~Vls~~nds~~~~~~es~------------------------------------------------ 575 (1113)
T KOG0644|consen 545 L-EFIATMDWEPEEQVLSDQNDSEYNRSPESL------------------------------------------------ 575 (1113)
T ss_pred c-cchhhhccccchhhhhhcccccccCCcccc------------------------------------------------
Confidence 4 889999999999999999998887644410
Q ss_pred cccccccccccccccCCcccCCCcccccCccccccccccccccccchHHHHHHHHhhhhhhhcCcCCCCC
Q 000454 844 SSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGE 913 (1491)
Q Consensus 844 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 913 (1491)
++.++- ..+..|.++.|-+.|.+|+++.++|+++|+|+++|||+..|+++++++-+.+
T Consensus 576 -----------seldg~-isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~ 633 (1113)
T KOG0644|consen 576 -----------SELDGM-ISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRK 633 (1113)
T ss_pred -----------hhhhhh-hhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCcccccc
Confidence 222222 2333444556777888888999999999999888888888877777766543
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-48 Score=430.25 Aligned_cols=362 Identities=25% Similarity=0.430 Sum_probs=311.5
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.++-..+.||.++|.|++|+|+|.+||||+.|.++++||+.|..+++++++|...|.||+|+|||+.||+|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCce-eeeccCCCceEEEEecCCCC--ceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 313 RLPDGLPI-SVLRGHTAAVTAIAFSPRPG--SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 313 Dl~tgk~i-~~L~gHs~~VtsLaFSPdg~--s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|..+|+++ ..|.+|...|++++|.|-.. ...+|++++.||.|+|||+..+.++..+ .
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------------------s 244 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------------------S 244 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------c
Confidence 99998765 57899999999999987421 1128999999999999999988877665 4
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
+|...|+|+.|-.+| +|++|+.|++|++|+... +.....+.+|...|+.++.+.+...............
T Consensus 245 gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d---------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD---------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred cCccceEEEEEcCCc-eEEecCCCceEEEEEccc---------hhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 699999999997665 899999999999999965 5678899999999999999855311111000000000
Q ss_pred CC---------cccc-ccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 470 ST---------PKFK-NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 470 ~~---------~~~~-~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
.. .+.. ..-..+..+++|+.|+++.+|+.... ..++.+..+|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~----------------------------kkpi~rmtgH 366 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS----------------------------KKPITRMTGH 366 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----------------------------ccchhhhhch
Confidence 00 0000 01123468999999999999987642 2567788899
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~ 619 (1491)
..-|+.+.||||+++||+++.|..|++|+..+|+.+.+|.||-+.|+.++|+. +.++|++|+.|.+++||++.+.++..
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 620 ~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
.+.+|...|+++.|+|||+.+++|+.|..+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-42 Score=381.58 Aligned_cols=332 Identities=21% Similarity=0.360 Sum_probs=288.3
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+|-..+.||..+|.|++|+|+|..||+|+.|.++|+||+.+..++.+.++|...|.|++|+||++ .|++|+.||.|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEE
Confidence 45567889999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-----CCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-----DG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+||..+++..... ..+|...|++++|.| ..++||+++.||.|+|||+..
T Consensus 183 lwdpktg~~~g~~-------------------l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~------- 236 (480)
T KOG0271|consen 183 LWDPKTGQQIGRA-------------------LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL------- 236 (480)
T ss_pred EecCCCCCccccc-------------------ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-------
Confidence 9999998865443 467999999999976 578999999999999999954
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
..++..+.+|+..|+||.|-..+ ++++||.|++|++|+...++
T Consensus 237 --~~~~~~lsgHT~~VTCvrwGG~g---------------------------liySgS~DrtIkvw~a~dG~-------- 279 (480)
T KOG0271|consen 237 --GTCVRTLSGHTASVTCVRWGGEG---------------------------LIYSGSQDRTIKVWRALDGK-------- 279 (480)
T ss_pred --ceEEEEeccCccceEEEEEcCCc---------------------------eEEecCCCceEEEEEccchh--------
Confidence 56888999999999999998765 89999999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc-----------C-------------------------CCCE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS-----------L-------------------------DNRF 554 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS-----------P-------------------------DG~~ 554 (1491)
....+.+|...|+.++++ | .+..
T Consensus 280 ---------------------~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 280 ---------------------LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred ---------------------HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 233445555555555544 2 2346
Q ss_pred EEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEE
Q 000454 555 VLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF 633 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vtslaf 633 (1491)
|++|+.|.++.+|+-.. .+++..+.||...|+.+.|+| +++++|+++.|..|++|+..+|+.+.+|.+|-.+|+.++|
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 99999999999999754 558889999999999999999 8899999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCc
Q 000454 634 SPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 713 (1491)
Q Consensus 634 SPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~ 713 (1491)
|.|.++|++|+.|.+|+||++.+.++...++
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLp------------------------------------------------- 448 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLP------------------------------------------------- 448 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCC-------------------------------------------------
Confidence 9999999999999999999997754433221
Q ss_pred chhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEecc
Q 000454 714 YQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 753 (1491)
Q Consensus 714 ~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~ 753 (1491)
++.-.|..+.|||||.++|.| .-|.-+++|.
T Consensus 449 ------Gh~DEVf~vDwspDG~rV~sg---gkdkv~~lw~ 479 (480)
T KOG0271|consen 449 ------GHADEVFAVDWSPDGQRVASG---GKDKVLRLWR 479 (480)
T ss_pred ------CCCceEEEEEecCCCceeecC---CCceEEEeec
Confidence 133345569999999999999 8888899984
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-39 Score=384.39 Aligned_cols=431 Identities=19% Similarity=0.281 Sum_probs=347.6
Q ss_pred CCcceeeeccccCCCcccccceeEEEEcc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEE
Q 000454 213 APSIRAACYAIAKPSTMVQKMQNIKRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDL 291 (1491)
Q Consensus 213 ~~sl~s~~~~~a~~~~~v~t~k~v~tL~G-H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsL 291 (1491)
...+..+........|.+++.+.++.+++ |.++|.-++|+|.|..||+|+.||.|+|||+..+.+.+.|+||.+.|.++
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence 34455555666667788888999999998 99999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--EEEEEECCCeEEEEECCCCC-ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 292 AVSSNNA--LVASASNDCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 292 afSPDG~--lLASGS~DGtIrVWDl~tgk-~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.|.|+-. +|++|..|++|++||+.+.. ++.++..|...|++++|.+++. .+++++.|..|.|||+.+.+....+
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---ELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---eEEEeccCcEEEEeehhhhhhhhee
Confidence 9999755 68999999999999999655 4888999999999999999976 7788888888888887433322211
Q ss_pred ecC----------C----------------------------------C-CCccc-------------------------
Q 000454 369 YIP----------R----------------------------------P-SDAVA------------------------- 378 (1491)
Q Consensus 369 ~~~----------~----------------------------------~-~~~~~------------------------- 378 (1491)
... . + .....
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 100 0 0 00000
Q ss_pred ----------------------C-------------------CCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEE
Q 000454 379 ----------------------G-------------------RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 417 (1491)
Q Consensus 379 ----------------------g-------------------~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~Ir 417 (1491)
| ..........+|...|.++....+|-+|++|+.|.+++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 0 00000113356777888888667788999999999999
Q ss_pred EEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEe
Q 000454 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497 (1491)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWD 497 (1491)
+|.+.... ....++....+|.+.|.+|+++..+ ...|+++|.|+++++|+
T Consensus 391 lWr~~~~~-----~~~~~~a~~~gH~~svgava~~~~~-------------------------asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 391 LWRLNNNC-----SKSLCVAQANGHTNSVGAVAGSKLG-------------------------ASFFVSVSQDCTLKLWD 440 (775)
T ss_pred EEEecCCc-----chhhhhhhhcccccccceeeecccC-------------------------ccEEEEecCCceEEEec
Confidence 99884321 1234566778999999999997654 35899999999999999
Q ss_pred cCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE
Q 000454 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 577 (1491)
Q Consensus 498 l~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t 577 (1491)
+...+.... +...........|...|++++++|+.++||||+.|.+.+||++..+.+..+
T Consensus 441 l~~s~~~~~--------------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 441 LPKSKETAF--------------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred CCCcccccc--------------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 875221000 111112223457899999999999999999999999999999999999999
Q ss_pred EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 578 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 578 L~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
|.||...|++|.|+| ..++++|+|.|++|+||.+.++.++.+|.+|...|..+.|-.+|+.|++++.||-|+||++.++
T Consensus 501 LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999999999 6789999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeE
Q 000454 658 ESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKL 737 (1491)
Q Consensus 658 ~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~L 737 (1491)
++...+. .+.-.+++++-+|.+..+
T Consensus 580 eC~~tlD-------------------------------------------------------~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 580 ECEMTLD-------------------------------------------------------AHNDRVWALSVSPLLDMF 604 (775)
T ss_pred hhhhhhh-------------------------------------------------------hccceeEEEeecCcccee
Confidence 7765431 133345558889999999
Q ss_pred EEeeCCCCCCcEEeccCC
Q 000454 738 AVGPDFSLDQGYQLQPLA 755 (1491)
Q Consensus 738 Avg~d~s~d~~v~lw~~~ 755 (1491)
++| +.|+.+.+|--.
T Consensus 605 ~tg---g~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 605 VTG---GGDGRIIFWKDV 619 (775)
T ss_pred Eec---CCCeEEEEeecC
Confidence 999 899999999653
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.8e-39 Score=361.91 Aligned_cols=291 Identities=27% Similarity=0.450 Sum_probs=268.4
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN--NALVASASNDCIIR 310 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD--G~lLASGS~DGtIr 310 (1491)
+.++..--|-+.+|..+.|++|++.|||||.+|.++||+..+...+.+|+||...|.++.|+|. +..||||+.||+|+
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 3344444577889999999999999999999999999999999999999999999999999996 66999999999999
Q ss_pred EEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 311 VWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
+|++.+..++..+.+|...|..++|+|+|+ +|++++.|.+-++||+.++..+... .+
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~Q--------------------EG 301 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELLLQ--------------------EG 301 (459)
T ss_pred eeccCCCcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhHhh--------------------cc
Confidence 999999999999999999999999999998 9999999999999999988754432 56
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCC
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1491)
|...|.+|+|.+||.++++|+.|..-+|||+++ +..+..+.+|...|.+|.|+|+|
T Consensus 302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt---------gr~im~L~gH~k~I~~V~fsPNG--------------- 357 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT---------GRCIMFLAGHIKEILSVAFSPNG--------------- 357 (459)
T ss_pred cccccceeEecCCCceeeccCccchhheeeccc---------CcEEEEecccccceeeEeECCCc---------------
Confidence 999999999999999999999999999999988 56788999999999999999997
Q ss_pred CccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC
Q 000454 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1491)
Q Consensus 471 ~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP 550 (1491)
..|+||+.|++++|||++..+ .+..+..|..-|+.|.|+|
T Consensus 358 -----------y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 358 -----------YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred -----------eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEecc
Confidence 489999999999999999633 2455678999999999998
Q ss_pred -CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 551 -DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 551 -DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
.|.+|++++.|++++||...++.+++++.||.+.|.+++++| ++.+++|++.|.+|++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 789999999999999999999999999999999999999999 788999999999999995
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-36 Score=345.02 Aligned_cols=475 Identities=17% Similarity=0.291 Sum_probs=363.7
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASND 306 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSPDG~lLASGS~D 306 (1491)
.+.....+..+..|...|+-..|+|.|-|+|+|...|.|+|||..... +..+++.-.++|.+|+|+.+++.|++.+..
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 344556677889999999999999999999999999999999987532 234566778999999999999999887753
Q ss_pred ----CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 307 ----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 307 ----GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
|.+.+|| +|..+..+.||...|.++.|-|... +++++|+.|++|.+|+-..-++
T Consensus 125 rerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPFKF------------------ 182 (603)
T KOG0318|consen 125 RERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPFKF------------------ 182 (603)
T ss_pred ccceeEEEEec--CCCccceeeccceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCeee------------------
Confidence 4456665 7888999999999999999999854 7999999999999997532222
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec---CCCCCceEEEEccCccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~---gH~~~V~sVafSpdg~as~ 459 (1491)
....+.|..-|.|+.|+|||.+||+.+.||.|.+||-.++ ..+..+. +|.+.|.++.|+|++
T Consensus 183 --k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg---------e~vg~l~~~~aHkGsIfalsWsPDs---- 247 (603)
T KOG0318|consen 183 --KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG---------EKVGELEDSDAHKGSIFALSWSPDS---- 247 (603)
T ss_pred --eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc---------cEEEEecCCCCccccEEEEEECCCC----
Confidence 2334568889999999999999999999999999998763 4455555 999999999999996
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccc------------cccccccccCCC--CCCCCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA------------ARWTQAYHLKVP--PPPMPP 525 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~------------~~~~~~~~l~~~--~~~~~~ 525 (1491)
.+|++++.|.+++|||+.+.+..... ..|.....+.+. ......
T Consensus 248 ----------------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 248 ----------------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred ----------------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 69999999999999999987543211 122221111111 111112
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYD 604 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~D 604 (1491)
.+....+...+.+|...|++++.++|+++|++|+.||.|.-|+..+|..-... .+|...|.+++.+. ...+++++.|
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~D 383 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWD 383 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecC
Confidence 22333467788999999999999999999999999999999999988776554 78999999998864 3455689999
Q ss_pred CcEEEEeCCCC------------ceE-------------------EEEeeC--------CcceEEEEEcCCCCEEEEEeC
Q 000454 605 GKTIVWDIWEG------------IPI-------------------RIYEIS--------RFRLVDGKFSPDGASIILSDD 645 (1491)
Q Consensus 605 GtIrIWDl~tG------------k~l-------------------~~l~~h--------~~~VtslafSPDG~~LAsgs~ 645 (1491)
.++++.++..+ ++. ..++.+ .....+++++|++..+|+|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 99999976321 000 011111 124557899999999999999
Q ss_pred CCcEEEEECCCCccc--------ccccceeeecCCCcceEE-ccCCCEEEccccccCccccCCCccccccCCCCCCcchh
Q 000454 646 VGQLYILNTGQGESQ--------KDAKYDQFFLGDYRPLVQ-DTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 716 (1491)
Q Consensus 646 DG~I~IWdl~tG~~~--------~~~~~~~~fs~D~r~La~-d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~ 716 (1491)
||.|+||.+..+++. ...+..+.|+||+..|+. |..+.++ +|++....+- ...+.
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv---------~yd~~s~~~~------~~~w~- 527 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV---------LYDVASREVK------TNRWA- 527 (603)
T ss_pred cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE---------EEEcccCcee------cceee-
Confidence 999999999876642 234567899999999874 5666665 3665443331 11111
Q ss_pred hhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcccc---ccCCcccccccccccCCcCCCCCCCc
Q 000454 717 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM---IDPLPEFIDVMDWEPENEVQSDDNDS 786 (1491)
Q Consensus 717 l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~l---ieplp~~i~~~~W~P~~ev~s~d~~~ 786 (1491)
+ +...+..++|||+..++|+| ++|..|.+|.+..|... ...++.-+..+.|.-+.++++...|.
T Consensus 528 -F--HtakI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 528 -F--HTAKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred -e--eeeeEEEEEeCCCceEEEec---cccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcc
Confidence 1 66789999999999999999 99999999999876522 22344457889999999999887775
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=352.57 Aligned_cols=287 Identities=20% Similarity=0.307 Sum_probs=267.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 282 ~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
.|...+|..+.|+.|+..||||+.+|.++||+..++..+.+|.+|...|.++.|+|.... ..|++|+.||+|++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-LNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-cceeeeccCCceeeeccCC
Confidence 356789999999999999999999999999999999999999999999999999998411 2799999999999999998
Q ss_pred CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 362 g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
...+..+ .+|...|..++|+|+|++|++++.|.+-++||+.+ ...+....|
T Consensus 251 e~~l~~l--------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t---------k~ElL~QEG 301 (459)
T KOG0272|consen 251 ETPLQDL--------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET---------KSELLLQEG 301 (459)
T ss_pred Ccchhhh--------------------hcchhhheeeeecCCCceeeecccccchhhccccc---------chhhHhhcc
Confidence 7766665 45889999999999999999999999999999987 456777899
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
|...|.+++|.++| ..+++|+.|..-+|||+++++
T Consensus 302 Hs~~v~~iaf~~DG--------------------------SL~~tGGlD~~~RvWDlRtgr------------------- 336 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDG--------------------------SLAATGGLDSLGRVWDLRTGR------------------- 336 (459)
T ss_pred cccccceeEecCCC--------------------------ceeeccCccchhheeecccCc-------------------
Confidence 99999999999997 689999999999999999854
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
.+..+.+|...|..|+|+|+|-.||||+.|++++|||++...++.++.+|.+.|+.|.|+|..+.+|+|+
T Consensus 337 ----------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 337 ----------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ----------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 4556678999999999999999999999999999999999999999999999999999999899999999
Q ss_pred eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
++|++++||...++.+++.+.+|.+.|.++.+++||++|++++.|.+|++|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999995
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-36 Score=327.25 Aligned_cols=292 Identities=22% Similarity=0.393 Sum_probs=264.8
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
++.-++|+||.+.|+++.|++|.++|+++|.||.+.|||.-|...++.+.-...+|..++|+|.|+++|+|+.|....||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ECCCC------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 313 RLPDG------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 313 Dl~tg------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
++.+. ...+.+.+|++.+.++.|.+|+ .|++++.|.++.+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f------------------ 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF------------------ 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe------------------
Confidence 99854 3456789999999999999976 6999999999999999999877776
Q ss_pred CCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 387 s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.+|.+.|.+++++| +++.|++|+.|+..+|||++. ......+.+|...|++|.|.|+|
T Consensus 183 --~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~---------~~c~qtF~ghesDINsv~ffP~G---------- 241 (343)
T KOG0286|consen 183 --HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS---------GQCVQTFEGHESDINSVRFFPSG---------- 241 (343)
T ss_pred --cCCcccEEEEecCCCCCCeEEecccccceeeeeccC---------cceeEeecccccccceEEEccCC----------
Confidence 46999999999999 999999999999999999987 46788999999999999999997
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
.-|++|+.|+++++||++..+..... .-.....+|++
T Consensus 242 ----------------~afatGSDD~tcRlyDlRaD~~~a~y---------------------------s~~~~~~gitS 278 (343)
T KOG0286|consen 242 ----------------DAFATGSDDATCRLYDLRADQELAVY---------------------------SHDSIICGITS 278 (343)
T ss_pred ----------------CeeeecCCCceeEEEeecCCcEEeee---------------------------ccCcccCCcee
Confidence 58999999999999999975422110 01123457999
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
++||..|++|++|..|.++.|||.-.++.+..|.||.+.|++|..+| ++..|+||+.|.+|+||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999 889999999999999994
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-35 Score=339.45 Aligned_cols=327 Identities=23% Similarity=0.433 Sum_probs=283.4
Q ss_pred EEEEccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--Ce--EEEEEe------c----CCCCeEEEEEcCCCCEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AY--CLASCR------G----HEGDITDLAVSSNNALV 300 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~T--g~--~l~tL~------g----H~~~VtsLafSPDG~lL 300 (1491)
++.+. |...|++.+|+|-.. .||+|+.|-+.++|++.. .. ....|+ + ....|++++|+.+|.+|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 34444 999999999999766 899999999999999863 11 111121 1 24689999999999999
Q ss_pred EEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 301 ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
|+|+.||.++||+. +|..+.+|..|.++|.++.|+..+. +|++++.|+++.+||..++...+.+.+
T Consensus 251 atG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~---------- 316 (524)
T KOG0273|consen 251 ATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEF---------- 316 (524)
T ss_pred EEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeee----------
Confidence 99999999999995 6888999999999999999999998 999999999999999999887776643
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
|......+.|-. ..-|++.+.|+.|+|+.+.. ..++..+.+|.+.|.++.|.|.+
T Consensus 317 ----------~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~---------~~P~~t~~GH~g~V~alk~n~tg----- 371 (524)
T KOG0273|consen 317 ----------HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGE---------DRPVKTFIGHHGEVNALKWNPTG----- 371 (524)
T ss_pred ----------ccCCccceEEec-CceEeecCCCceEEEEEecC---------CCcceeeecccCceEEEEECCCC-----
Confidence 344446677754 45688999999999999854 45778889999999999999986
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
..|+++|.|++++||.... ......+..|.
T Consensus 372 ---------------------~LLaS~SdD~TlkiWs~~~-----------------------------~~~~~~l~~Hs 401 (524)
T KOG0273|consen 372 ---------------------SLLASCSDDGTLKIWSMGQ-----------------------------SNSVHDLQAHS 401 (524)
T ss_pred ---------------------ceEEEecCCCeeEeeecCC-----------------------------Ccchhhhhhhc
Confidence 6899999999999998764 23445677889
Q ss_pred CCeeEEEEcCCC---------CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 541 RGVNMIVWSLDN---------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 541 ~~VtsVafSPDG---------~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
..|..+.|+|.| ..+++++.|++|++||+..|.++++|..|..+|++|+|+| +++++|+|+.||.|.||+
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWS 480 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecc
Confidence 999999999965 4799999999999999999999999999999999999999 889999999999999999
Q ss_pred CCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 612 l~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+.+++.++.+. ..+.|..++|+.+|.+|.++-.||.+.+.|+
T Consensus 481 ~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 481 TKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ccchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999998 5667999999999999999999999999987
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=335.79 Aligned_cols=438 Identities=16% Similarity=0.203 Sum_probs=344.7
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASND 306 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~--l~tL~gH~~~VtsLafSPDG~lLASGS~D 306 (1491)
.+..+.+.+++.||-..|++|.|+.|.++|++||.|.+++||++...+- ...+.+|.+.|..+-|..+...|++.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 4566788999999999999999999999999999999999999987665 56678999999999999999999999999
Q ss_pred CeEEEEECCC-----------------------CCc-----e------eeeccCCCceEEEEecCCCCceEEEEEEeCCC
Q 000454 307 CIIRVWRLPD-----------------------GLP-----I------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 307 GtIrVWDl~t-----------------------gk~-----i------~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG 352 (1491)
|.|.+|.... ++. . .-+......|++.+|++... .|+++-..|
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~---~lvvgFssG 287 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN---LLVVGFSSG 287 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce---EEEEEecCC
Confidence 9999997651 111 0 01122336799999999876 899999999
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC-ceEEEEeCCCCCCCCCCC
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D-G~IrVWDl~t~~~~~s~~ 431 (1491)
...+|++..-.++..+.+ ....|..++|+..|.+||.|+.. |.+.||+...
T Consensus 288 ~f~LyelP~f~lih~LSi--------------------s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-------- 339 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSI--------------------SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-------- 339 (893)
T ss_pred eeEEEecCCceEEEEeec--------------------ccceeeEEEecccCCEEEEcCCccceEEEEEeec--------
Confidence 999999988777766643 45679999999999999999875 8999999965
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
..-+....+|...+++++++|+| +++++|+.||.|+|||..+
T Consensus 340 -EsYVlKQQgH~~~i~~l~YSpDg--------------------------q~iaTG~eDgKVKvWn~~S----------- 381 (893)
T KOG0291|consen 340 -ESYVLKQQGHSDRITSLAYSPDG--------------------------QLIATGAEDGKVKVWNTQS----------- 381 (893)
T ss_pred -cceeeeccccccceeeEEECCCC--------------------------cEEEeccCCCcEEEEeccC-----------
Confidence 34566678999999999999997 6999999999999999885
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCC-CeEEEEE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYVLDV 590 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~-~VtsLaf 590 (1491)
+.+...+..|...|+.+.|+..|+.|++++.||+|+.||+...+..+++..... ...||+.
T Consensus 382 ------------------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 382 ------------------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred ------------------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 345677888999999999999999999999999999999999999999976543 3567888
Q ss_pred ecCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc------cccc
Q 000454 591 HPFNPRIAMSAGYDG-KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES------QKDA 663 (1491)
Q Consensus 591 SPdd~~lLaSgS~DG-tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~------~~~~ 663 (1491)
.| .+.++..|+.|. .|.||++.+|+++..+.+|.++|.+++|+|+|..||+++.|.+|++|++-.... +...
T Consensus 444 D~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 444 DP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred cC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence 88 667777787775 699999999999999999999999999999999999999999999999854421 1222
Q ss_pred cceeeecCCCcceEEccCCCEEEc-cccccCccccCCCccccccCCCC-CCcchhhhhhcccccccEEEcCCCCeEEEee
Q 000454 664 KYDQFFLGDYRPLVQDTYGNVLDQ-ETQLAPHRRNLQDPLCDSAMIPY-PEPYQTMYQQRRLGALGIEWRPSSLKLAVGP 741 (1491)
Q Consensus 664 ~~~~~fs~D~r~La~d~~G~vLde-~tq~~p~Lw~l~~~l~d~s~~p~-p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~ 741 (1491)
...+.|.||++.|++..-.+.+.. +...+..+-.+ ++.-|..+... ...+.+......-....|.||+||..+..|
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I-dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg- 600 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI-DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG- 600 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc-cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec-
Confidence 356799999999987765544321 12111111111 11111111110 111111111122335679999999999998
Q ss_pred CCCCCCcEEeccCCCcc
Q 000454 742 DFSLDQGYQLQPLADLD 758 (1491)
Q Consensus 742 d~s~d~~v~lw~~~~~~ 758 (1491)
.....|-+++..++.
T Consensus 601 --G~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 601 --GESNSICIYDVPEGV 615 (893)
T ss_pred --CCcccEEEEECchhh
Confidence 677789999987654
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-35 Score=346.70 Aligned_cols=384 Identities=19% Similarity=0.244 Sum_probs=313.4
Q ss_pred CCcccccccccccccCccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCC--EEEEEeCCCeE
Q 000454 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR--YVITGSDDRLV 267 (1491)
Q Consensus 190 ~h~d~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~--~LATGS~DGtI 267 (1491)
.|...|-...+.+.|+ .++..+.....+.|++....+.+.|+||.+.|.++.|.|+-. .|++|..|++|
T Consensus 103 ~He~Pvi~ma~~~~g~---------LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGT---------LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred ccCCCeEEEEEcCCCc---------eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 3555555666665554 344555667778899999999999999999999999999765 48999999999
Q ss_pred EEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc---------------------------
Q 000454 268 KIWSMETAY-CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP--------------------------- 319 (1491)
Q Consensus 268 rIWDl~Tg~-~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~--------------------------- 319 (1491)
++||+.+.. ++.++..|...|++++|++|+..+++++.|..|.|||+.+.+.
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 999998655 4888899999999999999999999999999999998722000
Q ss_pred --------------------------------------------------------------------------------
Q 000454 320 -------------------------------------------------------------------------------- 319 (1491)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (1491)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred ------------------------eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 320 ------------------------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 320 ------------------------i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
...+.||+..|.++....+|- +|++|+.|.++++|.++.+......
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~---llat~sKD~svilWr~~~~~~~~~~------- 403 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD---LLATGSKDKSVILWRLNNNCSKSLC------- 403 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc---EEEEecCCceEEEEEecCCcchhhh-------
Confidence 011335666666666444443 8999999999999988544322211
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.....+|...|.+++++..+ .+|++++.|+++++|++...+................|...|++|+++|+
T Consensus 404 ---------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 404 ---------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred ---------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 22335689999999997765 68999999999999999763222111111222345689999999999997
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
. ..|+|||.|.+.+||++... ....
T Consensus 475 d--------------------------kLiAT~SqDktaKiW~le~~-----------------------------~l~~ 499 (775)
T KOG0319|consen 475 D--------------------------KLIATGSQDKTAKIWDLEQL-----------------------------RLLG 499 (775)
T ss_pred C--------------------------ceEEecccccceeeecccCc-----------------------------eEEE
Confidence 4 68999999999999998742 3456
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
.+.+|..+|.++.|+|..+.|++++.|++|+||.+.++.++++|.||...|..+.|-. ++..|+||+.||.|+||++.+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccc
Confidence 6789999999999999999999999999999999999999999999999999999988 677888999999999999999
Q ss_pred CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 615 Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.|+.++..|...|++++.+|.+.++++|+.||.|.+|.=.+-
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999999999999999999999976554
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-33 Score=330.90 Aligned_cols=426 Identities=19% Similarity=0.280 Sum_probs=335.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg--------~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
...+|.||.|||+|+++|.|.. ..+.||..... .+.+++.+|...|++|.|+.|.++|++|+.|.+++||+
T Consensus 95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 3578999999999999998864 68999987532 34567789999999999999999999999999999999
Q ss_pred CCCCCc--eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC--CccceeecCCCCCcc----cCCC-C--
Q 000454 314 LPDGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS--QFSPRIYIPRPSDAV----AGRN-M-- 382 (1491)
Q Consensus 314 l~tgk~--i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg--~~~~~i~~~~~~~~~----~g~~-~-- 382 (1491)
+...+- ...+.+|...|.+.-|..+.. .|++.+.||.+.+|..... .....-.-....... .+.. .
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~~~~~---~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFGANSL---DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred eccccccceEeccCCCcceEEEEeccCcc---eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 987665 567789999999999999876 7999999999999987622 100000000000000 0000 0
Q ss_pred -----CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccc
Q 000454 383 -----APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1491)
Q Consensus 383 -----~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1491)
............|++++|++.-+.||+|-..|...+|.+.. ...+..+.-....|..+.|+..|
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---------f~lih~LSis~~~I~t~~~N~tG-- 319 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---------FNLIHSLSISDQKILTVSFNSTG-- 319 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---------ceEEEEeecccceeeEEEecccC--
Confidence 00011122337899999999999999999999999999854 55677777777889999998665
Q ss_pred cccccccCCCCCCCccccccccCCCeEEEEeCC-CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
+.|+.|+.. |.+.||+..+.. -+...
T Consensus 320 ------------------------DWiA~g~~klgQLlVweWqsEs-----------------------------YVlKQ 346 (893)
T KOG0291|consen 320 ------------------------DWIAFGCSKLGQLLVWEWQSES-----------------------------YVLKQ 346 (893)
T ss_pred ------------------------CEEEEcCCccceEEEEEeeccc-----------------------------eeeec
Confidence 677776654 999999887632 23345
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
.+|...++++++||||++||+|+.||.|+|||..+|-|+.+|..|+..|+.+.|+. .++.+++++-||+|+.||+...+
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccc
Confidence 67889999999999999999999999999999999999999999999999999999 77888999999999999999999
Q ss_pred eEEEEeeCCc-ceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcccccc------cceeeecCCCcceEEccCCCEEEcc
Q 000454 617 PIRIYEISRF-RLVDGKFSPDGASIILSDDVG-QLYILNTGQGESQKDA------KYDQFFLGDYRPLVQDTYGNVLDQE 688 (1491)
Q Consensus 617 ~l~~l~~h~~-~VtslafSPDG~~LAsgs~DG-~I~IWdl~tG~~~~~~------~~~~~fs~D~r~La~d~~G~vLde~ 688 (1491)
..++|..... ...+++..|.|..+++|+.|. .|+||++.+|+++..+ ...+.|++++..|+..+....+.
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR-- 503 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR-- 503 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE--
Confidence 9999985432 455788888899999988765 7999999999986544 34557999999999888888763
Q ss_pred ccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcc
Q 000454 689 TQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD 758 (1491)
Q Consensus 689 tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~ 758 (1491)
+|++-.-... -++++ ..-.+++++|+|||+.|||+ .+|+++.+|+.....
T Consensus 504 ------iW~if~s~~~------vEtl~-----i~sdvl~vsfrPdG~elaVa---TldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 504 ------IWDIFSSSGT------VETLE-----IRSDVLAVSFRPDGKELAVA---TLDGQITFFDIKEAV 553 (893)
T ss_pred ------EEEeeccCce------eeeEe-----eccceeEEEEcCCCCeEEEE---EecceEEEEEhhhce
Confidence 7886332111 11222 34568899999999999999 999999999996554
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-32 Score=315.48 Aligned_cols=363 Identities=15% Similarity=0.189 Sum_probs=288.9
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR---GHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~---gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
..++.-.+++.|..-|+|+.|+|||.++||++.||+|.|||-.+|+.+..|. +|.+.|.+|+|+||++.|++++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 4567778899999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred eEEEEECCCCCceeeeccCC---CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHT---AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs---~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
+++|||+.+.+++.++.-.. ..-..+.|..+ .|++.+.+|+|.+++...+.....+
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd-----~lItVSl~G~in~ln~~d~~~~~~i---------------- 316 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD-----HLITVSLSGTINYLNPSDPSVLKVI---------------- 316 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCC-----eEEEEEcCcEEEEecccCCChhhee----------------
Confidence 99999999999998886332 33445566643 7999999999999999888755444
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
.+|...|++++.++++.+|++|+.||.|.-|+..++... ...-.+|...|.+++.+..
T Consensus 317 ----~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------~~~g~~h~nqI~~~~~~~~---------- 374 (603)
T KOG0318|consen 317 ----SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------RLAGKGHTNQIKGMAASES---------- 374 (603)
T ss_pred ----cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc--------ccccccccceEEEEeecCC----------
Confidence 569999999999999999999999999999999764321 1112679999999988754
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC---------------
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR--------------- 529 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------- 529 (1491)
..+++++.|.++++.++......... ...+...+.........
T Consensus 375 -----------------~~~~t~g~Dd~l~~~~~~~~~~t~~~-----~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~ 432 (603)
T KOG0318|consen 375 -----------------GELFTIGWDDTLRVISLKDNGYTKSE-----VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ 432 (603)
T ss_pred -----------------CcEEEEecCCeEEEEecccCcccccc-----eeecCCCceeEEEcCCCCEEEEEecCcEEEEe
Confidence 37999999999999987643211110 00111111111111100
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll--~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtI 607 (1491)
...............+++++|++..+++|+.|+.|+||.+..+.+. ..+..|.++|++|+|+| ++.|||+|...+.|
T Consensus 433 ~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkv 511 (603)
T KOG0318|consen 433 DQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKV 511 (603)
T ss_pred cCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcE
Confidence 0011111223445788999999999999999999999999876643 35678999999999999 88999999999999
Q ss_pred EEEeCCCCceEE-EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 608 IVWDIWEGIPIR-IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 608 rIWDl~tGk~l~-~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
.+||+.+.+... .+.-|...|.+++|||+.++||+|+-|-.|.||++.....
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 999999887643 3344888999999999999999999999999999976543
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8e-33 Score=300.49 Aligned_cols=295 Identities=21% Similarity=0.319 Sum_probs=238.9
Q ss_pred cceeEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSME-----TAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpD-G~~LATGS~DGtIrIWDl~-----Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~ 305 (1491)
.+...-+|+||.+.|+.++..+. -..|++++.|.+|.+|++. .|..++.+.||...|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 35567799999999999999987 5688999999999999874 57889999999999999999999999999999
Q ss_pred CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
|+++++||+.+|+..+.|.+|...|.+++|++|+. .+++|+.|.+|++|++-... ..++.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~c-k~t~~---------------- 143 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVC-KYTIH---------------- 143 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccE-EEEEe----------------
Confidence 99999999999999999999999999999999987 99999999999999985432 11110
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
...+...|.|+.|+|+ .
T Consensus 144 --~~~~~~WVscvrfsP~---------------------------------------------------~---------- 160 (315)
T KOG0279|consen 144 --EDSHREWVSCVRFSPN---------------------------------------------------E---------- 160 (315)
T ss_pred --cCCCcCcEEEEEEcCC---------------------------------------------------C----------
Confidence 0011344455555544 1
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
....|++++.|+++++||+++.+ ....+.+|...++.
T Consensus 161 --------------~~p~Ivs~s~DktvKvWnl~~~~-----------------------------l~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 161 --------------SNPIIVSASWDKTVKVWNLRNCQ-----------------------------LRTTFIGHSGYVNT 197 (315)
T ss_pred --------------CCcEEEEccCCceEEEEccCCcc-----------------------------hhhccccccccEEE
Confidence 01356666666666666665422 22335668888999
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC-
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS- 624 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h- 624 (1491)
+++||||..+++|+.||.+.+||+..++.+..+. |...|.+++|+| +... +++..+..|+|||+.++.++..+...
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nryw-L~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NRYW-LCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-Ccee-EeeccCCceEEEeccchhhhhhccccc
Confidence 9999999999999999999999999999988875 788999999999 5444 45666777999999999888776521
Q ss_pred --------CcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 625 --------RFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 625 --------~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
......++||+||+.|++|..|+.|++|.+.
T Consensus 275 ~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1234578999999999999999999999874
No 15
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=327.13 Aligned_cols=431 Identities=16% Similarity=0.252 Sum_probs=333.8
Q ss_pred ceeeec-cccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 000454 216 IRAACY-AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 216 l~s~~~-~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafS 294 (1491)
+.+++| +..+..|........-++.||..+|+++.|+..|.+||+||.|+.|.|||+-...-+..++||...|+.+-|.
T Consensus 79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred eEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 345555 4555556666568888999999999999999999999999999999999998888899999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC------------
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS------------ 362 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg------------ 362 (1491)
.+.++|++.+.|+.|++||+.+..+..+...|.+.|+++++.++ .+++++.|+.+++|++...
T Consensus 159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~ 233 (888)
T KOG0306|consen 159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----LLVTAGTDSELKVWELAFEDDEKETNRYIST 233 (888)
T ss_pred CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc-----eEEEEecCCceEEEEeeccccccccccccee
Confidence 98899999999999999999999999999999999999999993 7999999999999998210
Q ss_pred ------------Ccccee--------------------ec---------------------C--CCCCccc---------
Q 000454 363 ------------QFSPRI--------------------YI---------------------P--RPSDAVA--------- 378 (1491)
Q Consensus 363 ------------~~~~~i--------------------~~---------------------~--~~~~~~~--------- 378 (1491)
+.+... .+ . .+...+.
T Consensus 234 ~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r 313 (888)
T KOG0306|consen 234 KLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKR 313 (888)
T ss_pred eccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHH
Confidence 000000 00 0 0000000
Q ss_pred -----------------CCCC--------------------CC---------CCCCCCCCcceEEEEECCCCCEEEEecC
Q 000454 379 -----------------GRNM--------------------AP---------SSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 379 -----------------g~~~--------------------~~---------~~s~~~h~~~V~slafSPDG~~LasGs~ 412 (1491)
+... .. .....+|...|.+++++.+...+++|+
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga- 392 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA- 392 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-
Confidence 0000 00 122356778888888888877666664
Q ss_pred CceEEEEeCCCCCCCCCCCC-------------------------------CceeeeecCCCCCceEEEEccCccccccc
Q 000454 413 DTLARVWNACKPNTDDSDQP-------------------------------NHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 413 DG~IrVWDl~t~~~~~s~~~-------------------------------~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
.+.|.||+..+.++...... ...+..+.+|.+.|+.++.+|++
T Consensus 393 ~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~------ 466 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN------ 466 (888)
T ss_pred CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC------
Confidence 56788888887655322111 12233456788999999998885
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1491)
..+++||.|.+|++||+..-.. .+.... ..-.-...+...-..
T Consensus 467 --------------------~g~vT~saDktVkfWdf~l~~~--------------~~gt~~---k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 467 --------------------KGFVTGSADKTVKFWDFKLVVS--------------VPGTQK---KVLSLKHTRTLELED 509 (888)
T ss_pred --------------------CceEEecCCcEEEEEeEEEEec--------------cCcccc---eeeeeccceEEeccc
Confidence 6899999999999999874111 000000 000011123344567
Q ss_pred CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000454 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l 621 (1491)
.|.|+.+||||++||++--|.+|+||-+.+-+..-.|.||.-+|.||..+| ++.+++|||.|..|+||-+.=|.|.+.+
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhh
Confidence 899999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred eeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCc
Q 000454 622 EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP 701 (1491)
Q Consensus 622 ~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~ 701 (1491)
.+|...|.++.|-|+..++++++.||.|+-||-..=+.++.+
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-------------------------------------- 630 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-------------------------------------- 630 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee--------------------------------------
Confidence 999999999999999999999999999999986332211110
Q ss_pred cccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccC
Q 000454 702 LCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1491)
Q Consensus 702 l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~ 754 (1491)
.++...+..++.+|+|.+++++ +-|..+++|--
T Consensus 631 -----------------~~H~~ev~cLav~~~G~~vvs~---shD~sIRlwE~ 663 (888)
T KOG0306|consen 631 -----------------DGHHSEVWCLAVSPNGSFVVSS---SHDKSIRLWER 663 (888)
T ss_pred -----------------ccchheeeeeEEcCCCCeEEec---cCCceeEeeec
Confidence 1244456679999999999999 99999999966
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=315.57 Aligned_cols=311 Identities=21% Similarity=0.324 Sum_probs=279.7
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
.+....+.+.+.||..+|+.+-|+|+-..+|++++|++|++||..+|++...++||...|.+|+|+..|++||+++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 44566777889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 309 IRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 309 IrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
+++||..+ .+++..+.+|...|.+++|-|.+. +|++++.|.+|+.|++.++.++.++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd---~ilS~srD~tik~We~~tg~cv~t~------------------- 231 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD---HILSCSRDNTIKAWECDTGYCVKTF------------------- 231 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCC---eeeecccccceeEEecccceeEEec-------------------
Confidence 99999987 577888899999999999999987 9999999999999999999998887
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.+|...|..+..+.||.++|+++.|.+|++|-+.+ ......+..|...|.+++|.|....+.
T Consensus 232 -~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t---------~~~k~~lR~hEh~vEci~wap~~~~~~-------- 293 (406)
T KOG0295|consen 232 -PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT---------KQCKAELREHEHPVECIAWAPESSYPS-------- 293 (406)
T ss_pred -cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc---------chhhhhhhccccceEEEEecccccCcc--------
Confidence 45778999999999999999999999999999976 445677899999999999998641100
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
-..++++.
T Consensus 294 --------------i~~at~~~---------------------------------------------------------- 301 (406)
T KOG0295|consen 294 --------------ISEATGST---------------------------------------------------------- 301 (406)
T ss_pred --------------hhhccCCC----------------------------------------------------------
Confidence 00000000
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcc
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~ 627 (1491)
..+.++++++.|++|++||+.+|.++.+|.||...|..++|+| +++||+++..|++++|||+.+++++.++..|..-
T Consensus 302 --~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 --NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF 378 (406)
T ss_pred --CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence 0467899999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 628 LVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 628 VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
|+++.|..+-.++++|+-|-.+++|.-
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999963
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.7e-32 Score=294.55 Aligned_cols=294 Identities=19% Similarity=0.239 Sum_probs=262.8
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW 357 (1491)
.++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.++ ++++|+-|..+.||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~---~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN---FVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC---eEEecCcCceeEEE
Confidence 378999999999999999999999999999999999999998998988899999999999998 99999999999999
Q ss_pred ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 358 Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
++.+....... .......+|.+.+.|+.|-.| ..|++++.|.++.+||+++ .+.+.
T Consensus 125 ~ls~~d~~g~~--------------~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~---------g~~~~ 180 (343)
T KOG0286|consen 125 PLSTRDAEGNV--------------RVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET---------GQQTQ 180 (343)
T ss_pred ecccccccccc--------------eeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc---------ceEEE
Confidence 99855211111 112234679999999999875 5688999999999999987 56788
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+.+|.+.|.++.++|.. .+.|++|+.|+..++||++.+
T Consensus 181 ~f~GH~gDV~slsl~p~~-------------------------~ntFvSg~cD~~aklWD~R~~---------------- 219 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSD-------------------------GNTFVSGGCDKSAKLWDVRSG---------------- 219 (343)
T ss_pred EecCCcccEEEEecCCCC-------------------------CCeEEecccccceeeeeccCc----------------
Confidence 999999999999999942 379999999999999999963
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC--CCCeEEEEEecCCC
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNP 595 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH--s~~VtsLafSPdd~ 595 (1491)
...+.+.+|...|++|+|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++|+. .+
T Consensus 220 -------------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 220 -------------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred -------------ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 456778999999999999999999999999999999999999998888632 34799999998 88
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
++|++|..|.++.+||.-.++.+..+.+|...|.++..+|||..|++|+.|..|+||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999999994
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.7e-32 Score=288.28 Aligned_cols=296 Identities=18% Similarity=0.353 Sum_probs=257.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC--ceeeeccCCCceEEE
Q 000454 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAI 333 (1491)
Q Consensus 256 ~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk--~i~~L~gHs~~VtsL 333 (1491)
-+||+++.|.+|++|...+|.|..+++...+.|..+.+.|++++||+++.- .||+||+.++. ++.++.+|+..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 478999999999999999999999999888999999999999999999865 79999998874 689999999999999
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC
Q 000454 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1491)
Q Consensus 334 aFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D 413 (1491)
.|..+++ .+++|+.||+++|||++...+...+ .+...|+++..+|+...|++|..+
T Consensus 90 gF~~dgr---WMyTgseDgt~kIWdlR~~~~qR~~---------------------~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 90 GFQCDGR---WMYTGSEDGTVKIWDLRSLSCQRNY---------------------QHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEeecCe---EEEecCCCceEEEEeccCcccchhc---------------------cCCCCcceEEecCCcceEEeecCC
Confidence 9999998 9999999999999999986554443 256789999999999999999999
Q ss_pred ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 414 G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
|.|+|||+....+... .+......|.++...|+| .+++.+...|..
T Consensus 146 g~irvWDl~~~~c~~~--------liPe~~~~i~sl~v~~dg--------------------------sml~a~nnkG~c 191 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHE--------LIPEDDTSIQSLTVMPDG--------------------------SMLAAANNKGNC 191 (311)
T ss_pred CcEEEEEccCCccccc--------cCCCCCcceeeEEEcCCC--------------------------cEEEEecCCccE
Confidence 9999999976433211 122334678899999986 689999999999
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG- 572 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg- 572 (1491)
.+|++-..... ....++.++..|...+..+.+|||+++||+++.|.+++||+..+.
T Consensus 192 yvW~l~~~~~~-----------------------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 192 YVWRLLNHQTA-----------------------SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEEccCCCcc-----------------------ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 99998753211 112456668889999999999999999999999999999999987
Q ss_pred ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEc
Q 000454 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1491)
Q Consensus 573 kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafS 634 (1491)
++-..+.+|...++..+||. ++.||+||+.|+.+++|++..++.++.+.+|..+..|++..
T Consensus 249 kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 66678899999999999999 78999999999999999999999999999999888887753
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=299.99 Aligned_cols=339 Identities=17% Similarity=0.260 Sum_probs=280.4
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
-+.+|..|++.|++|+.+|+.+++|||+.|....||++.+|..+..+.+|...|+++.|+.+|.+||||+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.++.....+...-..|.=+.|+|.+. .|++|+.||.|..|.+......+.+ .+|...
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~---illAG~~DGsvWmw~ip~~~~~kv~--------------------~Gh~~~ 192 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH---ILLAGSTDGSVWMWQIPSQALCKVM--------------------SGHNSP 192 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc---EEEeecCCCcEEEEECCCcceeeEe--------------------cCCCCC
Confidence 99998888876777888999999876 9999999999999999876444443 458889
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
++|-.|.|+|+.+++|..||+|++|+..++ .++..+.+. .....++.+...+
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg---------~p~~~~~~~e~~~~~~~~~~~~~------------------ 245 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTG---------QPLHKITQAEGLELPCISLNLAG------------------ 245 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCC---------ceeEEecccccCcCCcccccccc------------------
Confidence 999999999999999999999999999874 233333321 2334455555432
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC---CCCeeEEEEcC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT---PRGVNMIVWSL 550 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h---~~~VtsVafSP 550 (1491)
..++.|+.++.+.+-...+++....... ........+ ...|-.+.|+.
T Consensus 246 --------~~~~~g~~e~~~~~~~~~sgKVv~~~n~---------------------~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 246 --------STLTKGNSEGVACGVNNGSGKVVNCNNG---------------------TVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred --------ceeEeccCCccEEEEccccceEEEecCC---------------------CCccccccchhhhhhhhhccccc
Confidence 4788888888888887766553211110 000001112 22355566666
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEE
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 630 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vts 630 (1491)
.=.+.|+|+.||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.+|.|++||.++|+++..+.+|..+|.+
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 77789999999999999999887777665 888899999987 467778999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 631 GKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 631 lafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
++++|+++++++++.|+..+||++.
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999863
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.2e-31 Score=294.04 Aligned_cols=288 Identities=31% Similarity=0.554 Sum_probs=252.6
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+++|++|.+.|++++|+|++++|++++.||.|++|++.++.....+..|...+..+.|++++++|++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45788999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 316 tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
+++.+..+..|...|.++.|++++. ++++++.+|.|.+||+.+++....+ ..+...|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~i 138 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR---ILSSSSRDKTIKVWDVETGKCLTTL--------------------RGHTDWV 138 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC---EEEEecCCCeEEEEECCCcEEEEEe--------------------ccCCCcE
Confidence 9888889999999999999999965 7777777999999999876654443 1356689
Q ss_pred EEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccc
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1491)
Q Consensus 396 ~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1491)
.+++|+|++.++++++.++.|++||+.. ...+..+..|...|.++.|+|++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~-------------------- 189 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRT---------GKCVATLTGHTGEVNSVAFSPDG-------------------- 189 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccc---------cccceeEecCccccceEEECCCc--------------------
Confidence 9999999999999998899999999965 33455667888899999999875
Q ss_pred ccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEE
Q 000454 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1491)
Q Consensus 476 ~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 555 (1491)
..+++++.+|.|++||+...+ ....+..+...+.+++|++++.++
T Consensus 190 ------~~l~~~~~~~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 190 ------EKLLSSSSDGTIKLWDLSTGK-----------------------------CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred ------CEEEEecCCCcEEEEECCCCc-----------------------------eecchhhcCCceEEEEEcCCCcEE
Confidence 578888889999999998532 122223566689999999999999
Q ss_pred EEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 556 aSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
++++.++.|++|++.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 9888899999999999999999999999999999999 567888999999999996
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9e-32 Score=294.70 Aligned_cols=294 Identities=23% Similarity=0.400 Sum_probs=254.7
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~-Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.++-.+.||.+.|+++.|+|+|.+||||+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4456788999999999999999999999999999999964 446677889999999999999999999999999999999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
|+++|+.+..+++|...|..+. |...++.++.+++.||++++||+++...++++. ..
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------------------~k 174 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------------------NK 174 (338)
T ss_pred ecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc---------------------cc
Confidence 9999999999999999999998 444445688999999999999999887776652 45
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
.+++++.|..++..+.+|+-|+.|++||++. ......+.||.+.|+.+..++.+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~---------~d~~~~lsGh~DtIt~lsls~~g----------------- 228 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK---------NDGLYTLSGHADTITGLSLSRYG----------------- 228 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeecccc---------CcceEEeecccCceeeEEeccCC-----------------
Confidence 6799999999999999999999999999976 45788999999999999999986
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC----CCeeEEEE
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP----RGVNMIVW 548 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~----~~VtsVaf 548 (1491)
..+++-+.|.++++||++.-. +....+..+.++. .....++|
T Consensus 229 ---------s~llsnsMd~tvrvwd~rp~~-------------------------p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 229 ---------SFLLSNSMDNTVRVWDVRPFA-------------------------PSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred ---------CccccccccceEEEEEecccC-------------------------CCCceEEEeecchhhhhhhcceeec
Confidence 689999999999999998411 0111233333332 23456899
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
+|+++++.+|+.|..+++||......+..|.||.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 99999999999999999999999899999999999999999999 667888999999998743
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-31 Score=302.75 Aligned_cols=293 Identities=18% Similarity=0.334 Sum_probs=243.1
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIr 310 (1491)
+..++|..|++.|+-+.||++|+||||++.|.+..||.+... ++.+++.+|..+|..|.||||.++|++|+.+..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 345688899999999999999999999999999999998543 45788999999999999999999999999999999
Q ss_pred EEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 311 VWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 311 VWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+||+.+|.....+. +|...+.+++|.||+. .+++|+.|++|..||++.... ... ..
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~~-~~W-------------------~g 351 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNIL-GNW-------------------EG 351 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcchh-hcc-------------------cc
Confidence 99999999887775 4568899999999997 899999999999999975431 111 01
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.....|.+++..+||+++++.+.|..|++|+..+.. . ..+.....+|++++++.++
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~---------d-r~lise~~~its~~iS~d~-------------- 407 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV---------D-RGLISEEQPITSFSISKDG-------------- 407 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhh---------h-hccccccCceeEEEEcCCC--------------
Confidence 123459999999999999999999999999986421 1 1133456689999999875
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCC--eeEEE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG--VNMIV 547 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~--VtsVa 547 (1491)
.++++.-.+..+.+||+...+ .+.++.+|... +-.-|
T Consensus 408 ------------k~~LvnL~~qei~LWDl~e~~-----------------------------lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 408 ------------KLALVNLQDQEIHLWDLEENK-----------------------------LVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ------------cEEEEEcccCeeEEeecchhh-----------------------------HHHHhhcccccceEEEec
Confidence 577788889999999998533 22334444433 22334
Q ss_pred Ec-CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 548 WS-LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 548 fS-PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
|. .+..++++|+.|+.|+||+..+|+++.++.||...|+||+|+|.++.++|+||.||+|+||....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 43 35589999999999999999999999999999999999999999999999999999999998753
No 23
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-30 Score=308.14 Aligned_cols=491 Identities=18% Similarity=0.187 Sum_probs=328.2
Q ss_pred cccccceeEEEEccCCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 000454 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1491)
Q Consensus 228 ~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS--~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~ 305 (1491)
....+....+.+..|..+++||||+++|+|+|||- ....++||++..-..++.|..|.-.|+|++|+|.++||++.+.
T Consensus 63 fn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs 142 (1080)
T KOG1408|consen 63 FNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS 142 (1080)
T ss_pred EcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc
Confidence 44556667778888999999999999999999984 5678999999999999999999999999999999999997655
Q ss_pred --CCeEEEEECCCCCceeeeccCCCceEEEEecCCCC-------------------------------------------
Q 000454 306 --DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG------------------------------------------- 340 (1491)
Q Consensus 306 --DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~------------------------------------------- 340 (1491)
|-.|.+||++.......-+ -...|..++|+.++.
T Consensus 143 QHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ 221 (1080)
T KOG1408|consen 143 QHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFL 221 (1080)
T ss_pred ccceEEEhhhhhhcccccccc-cceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhh
Confidence 4456666653221111000 111222222222222
Q ss_pred -----------------------------------------------ceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 341 -----------------------------------------------SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 341 -----------------------------------------------s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
+..+|++|+.+|+|++|+..+-....++..+..
T Consensus 222 avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 222 AVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred hhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccc
Confidence 001677777777777777666655554432211
Q ss_pred CCcccCCCCCC----CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEE
Q 000454 374 SDAVAGRNMAP----SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1491)
Q Consensus 374 ~~~~~g~~~~~----~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV 449 (1491)
...-......+ .......-....++.|++....|.+...|..++|||++..+. ......+..|...|+.|
T Consensus 302 lg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k------vgk~~s~lyHS~ciW~V 375 (1080)
T KOG1408|consen 302 LGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK------VGKCSSMLYHSACIWDV 375 (1080)
T ss_pred cccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc------ccceeeeeeccceeeee
Confidence 11000000000 111111222345788999999999999999999999986432 23445667899999998
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccc--cccccccCCCCCCC----
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR--WTQAYHLKVPPPPM---- 523 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~--~~~~~~l~~~~~~~---- 523 (1491)
...|...-. -.........|++|+.||+|++|++..... ..... ......++++....
T Consensus 376 e~~p~nv~~---------------~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils~~l~ki~y~d~~~q~ 439 (1080)
T KOG1408|consen 376 ENLPCNVHS---------------PTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILSANLSKIPYEDSTQQI 439 (1080)
T ss_pred ccccccccC---------------cccccCCccceeEecCCCcEEEeecccccc-cceeecccchhhhhcCccccCchhh
Confidence 887742100 001111235699999999999999986211 00000 00000000000000
Q ss_pred ---CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecC--CCcEE
Q 000454 524 ---PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPF--NPRIA 598 (1491)
Q Consensus 524 ---~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPd--d~~lL 598 (1491)
..................++.+++.||+|++||+|...|.|+||++..-+.+..+.+|...|.|+.|+-- ..++|
T Consensus 440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhh
Confidence 0001111222334455667999999999999999999999999999999999999999999999999752 34799
Q ss_pred EEEeCCCcEEEEeCCCC-ceEEEEeeC-------------------------------------------------Ccce
Q 000454 599 MSAGYDGKTIVWDIWEG-IPIRIYEIS-------------------------------------------------RFRL 628 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~tG-k~l~~l~~h-------------------------------------------------~~~V 628 (1491)
|+++.|..|.|||+... .++.++.+| +..+
T Consensus 520 ASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred hhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 99999999999998532 122222211 2356
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEc-cccccCccccCCCccccccC
Q 000454 629 VDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQ-ETQLAPHRRNLQDPLCDSAM 707 (1491)
Q Consensus 629 tslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde-~tq~~p~Lw~l~~~l~d~s~ 707 (1491)
++++..|..+++++++.|..|+||++..|+..+..+....-.++-..++.|+.|.++.. .+...--+.++..+.|...|
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 67778899999999999999999999999988776655554455555677888877764 23333345667777776665
Q ss_pred CCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCC
Q 000454 708 IPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLA 755 (1491)
Q Consensus 708 ~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~ 755 (1491)
.. +...|.++.|.+|-+-|... +.|+-|.+|-++
T Consensus 680 ~G-----------HsE~VTG~kF~nDCkHlISv---sgDgCIFvW~lp 713 (1080)
T KOG1408|consen 680 TG-----------HSEAVTGVKFLNDCKHLISV---SGDGCIFVWKLP 713 (1080)
T ss_pred cC-----------cchheeeeeecccchhheee---cCCceEEEEECc
Confidence 44 55556679999999999988 899999999985
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.2e-30 Score=287.75 Aligned_cols=288 Identities=26% Similarity=0.439 Sum_probs=252.5
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW 357 (1491)
+.++.+|...|.+++|+|++++|++++.+|.|++|++.++.....+..|...+..+.|+|++. .|++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC---EEEEEcCCCeEEEE
Confidence 346778999999999999999999999999999999999988888999999999999999986 89999999999999
Q ss_pred ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 358 Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
++.+++....+ ..+...|.++.|++++.++++++.++.|.+|++.+ .....
T Consensus 79 ~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~ 129 (289)
T cd00200 79 DLETGECVRTL--------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------GKCLT 129 (289)
T ss_pred EcCcccceEEE--------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC---------cEEEE
Confidence 99877554444 23566899999999999999998899999999964 34566
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+..|...|.++.|+|++ .++++++.+|.|++||+...+
T Consensus 130 ~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~~~~i~i~d~~~~~--------------- 168 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDG--------------------------TFVASSSQDGTIKLWDLRTGK--------------- 168 (289)
T ss_pred EeccCCCcEEEEEEcCcC--------------------------CEEEEEcCCCcEEEEEccccc---------------
Confidence 677899999999999864 467777779999999987532
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~l 597 (1491)
....+..+...+.+++|+|+++.|++++.++.|++||+.+++.+..+..|...|.+++|+| ++.+
T Consensus 169 --------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 233 (289)
T cd00200 169 --------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYL 233 (289)
T ss_pred --------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcE
Confidence 2223345666899999999999999999999999999999999999988999999999999 4788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 598 LaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+++++.||.|++|++.+++++..+..+...|.+++|+|++.+|++++.||.|.+|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88888899999999999999999998888999999999999999999999999995
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-31 Score=294.44 Aligned_cols=295 Identities=23% Similarity=0.401 Sum_probs=256.8
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
-..+++.+.+.||.+.|.||++.|-..+++||+.|++|+|||+.+|++..++.||-..|..++||+--.||++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+.||++..+.++.+.||-..|+|++.+|.-. .|++|+.|.+++|||+++..
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~-------------------------- 268 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRA-------------------------- 268 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccc--------------------------
Confidence 9999999999999999999999999999765 78888888888888876432
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.+..+.||...|..|.+.|..
T Consensus 269 ---------------------------------------------~V~~l~GH~~~V~~V~~~~~d-------------- 289 (460)
T KOG0285|consen 269 ---------------------------------------------SVHVLSGHTNPVASVMCQPTD-------------- 289 (460)
T ss_pred ---------------------------------------------eEEEecCCCCcceeEEeecCC--------------
Confidence 234556788888888877642
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
..+++||.|++|++||++.++ ....+..|...|.+++.+
T Consensus 290 ------------pqvit~S~D~tvrlWDl~agk-----------------------------t~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 290 ------------PQVITGSHDSTVRLWDLRAGK-----------------------------TMITLTHHKKSVRALCLH 328 (460)
T ss_pred ------------CceEEecCCceEEEeeeccCc-----------------------------eeEeeecccceeeEEecC
Confidence 478899999999999988644 344556788889999999
Q ss_pred CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee------
Q 000454 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI------ 623 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~------ 623 (1491)
|....+|+++.| .|+-|++..|..++.+.+|...|++++... + .++++|+..|.|.+||..+|-..+.+..
T Consensus 329 P~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 329 PKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred CchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc-C-ceEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 999999999887 699999999999999999999999999876 3 4667899999999999999876655521
Q ss_pred --CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 624 --SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 624 --h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
....|++.+|...|..|++|..|.+|.+|.-..
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 234789999999999999999999999998643
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.9e-30 Score=298.73 Aligned_cols=289 Identities=19% Similarity=0.310 Sum_probs=256.4
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
..++|..|+..|.||.|+|...+++++-..|.|.||+.+|..+++.+.-..-+|.+..|-+..+++++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34566779999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+++.+..|..|...|.+|+.+|... ++++++.|-+|++||....-.... ...+|...
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~wa~~q-------------------tfeGH~Hy 142 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEWACEQ-------------------TFEGHEHY 142 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCceeeee-------------------EEcCcceE
Confidence 99999999999999999999999987 999999999999999976532222 23579999
Q ss_pred eEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|.+++|+| |.+.||+++-|++|+||.+.. ..+..++.+|...|++|.+.+.+
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs---------~~~nfTl~gHekGVN~Vdyy~~g------------------ 195 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGS---------PHPNFTLEGHEKGVNCVDYYTGG------------------ 195 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCC---------CCCceeeeccccCcceEEeccCC------------------
Confidence 99999999 678999999999999999965 34567788999999999999865
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
+..+|++|+.|.+|+|||..+. .+++.+.+|...|..++|+|.-.
T Consensus 196 ------dkpylIsgaDD~tiKvWDyQtk-----------------------------~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 196 ------DKPYLISGADDLTIKVWDYQTK-----------------------------SCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ------CcceEEecCCCceEEEeecchH-----------------------------HHHHHhhcccccceEEEecCCCc
Confidence 2469999999999999999873 35667889999999999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
+|++|+.||+++||+..+-++..++.-.-+.|+||+-.+ +...++.|...|.|.
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVT 294 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEE
Confidence 999999999999999999999888887788999999988 455566676666543
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-29 Score=305.83 Aligned_cols=368 Identities=20% Similarity=0.276 Sum_probs=290.1
Q ss_pred ccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 000454 206 GFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285 (1491)
Q Consensus 206 ~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~ 285 (1491)
++.+|+..|++.+...+..+..|++.-..++..|..|.++|..|+|+|++.++++|++|-.|+||+..+.+++.++.||-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc
Q 000454 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365 (1491)
Q Consensus 286 ~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~ 365 (1491)
..|..+.|++.-.+|+++|.|.+|+||++++++++.++.||...|.|.+|+|... .+++++-|.+|+|||+..-+..
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhcc
Confidence 9999999999999999999999999999999999999999999999999999876 8999999999999998643321
Q ss_pred ceeec--CCC-------CCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 366 PRIYI--PRP-------SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 366 ~~i~~--~~~-------~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
..-.. +.. .+...+..........+|...|+-++|+|.-.+|++|+.|..|++|.+...+ ...+
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEv 243 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEV 243 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceee
Confidence 11100 000 0001111222244567899999999999999999999999999999996432 4467
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
.+..+|.+.|.++-|+|.. +.+++.+.|++|+|||+..+.
T Consensus 244 DtcrgH~nnVssvlfhp~q--------------------------~lIlSnsEDksirVwDm~kRt-------------- 283 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQ--------------------------DLILSNSEDKSIRVWDMTKRT-------------- 283 (1202)
T ss_pred hhhhcccCCcceEEecCcc--------------------------ceeEecCCCccEEEEeccccc--------------
Confidence 8889999999999999963 689999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
.++.+.......+.++-+|..+++++| .|+-+.||-+..- .++.++ + ++.
T Consensus 284 ---------------~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE----------rpa~~v--~--~n~ 333 (1202)
T KOG0292|consen 284 ---------------SVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE----------RPAYAV--N--GNG 333 (1202)
T ss_pred ---------------ceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc----------CceEEE--c--CCE
Confidence 234444556778999999999988877 4555666665422 223333 2 333
Q ss_pred EEEEEeCCCcEEEEeCCCCce--EEEEeeC---CcceEEEEEcCCCCEEEEE-eC-CCcEEEEECC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIP--IRIYEIS---RFRLVDGKFSPDGASIILS-DD-VGQLYILNTG 655 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~--l~~l~~h---~~~VtslafSPDG~~LAsg-s~-DG~I~IWdl~ 655 (1491)
++..- |..|+.+|+.+.+- +..+... ..++.++.++|-...+..+ .. .|..-++.+.
T Consensus 334 LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 334 LFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred EEEEc--cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 33322 88999999988543 3334322 2478889999976655444 33 4555555553
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=6.1e-31 Score=318.17 Aligned_cols=281 Identities=25% Similarity=0.396 Sum_probs=242.4
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
+..++..-...|+|+.|++|+..||.|-.|..|++|.+... .++.+++. .. -..+=+.+.|-.+.+-|-
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~-~~---------l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA-SD---------LSNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch-hh---------hccccccccchhhhhccc
Confidence 44555555678999999999999999999999999999755 33344321 11 112224445555777787
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
..+....++.+|.++|+.+.|+|+.+ +|++++.|++||+|.+.+..++-.+ .+|..+
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~r---fLlScSED~svRLWsl~t~s~~V~y--------------------~GH~~P 495 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRR---FLLSCSEDSSVRLWSLDTWSCLVIY--------------------KGHLAP 495 (707)
T ss_pred cCCceeEEeecCCCceeeeeeccccc---ceeeccCCcceeeeecccceeEEEe--------------------cCCCcc
Confidence 77777888999999999999999988 9999999999999999988765554 468999
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
|+++.|+|.|-+||+++.|++.++|.... ..+++.+.+|-..|.|+.|+|+.
T Consensus 496 VwdV~F~P~GyYFatas~D~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs------------------- 547 (707)
T KOG0263|consen 496 VWDVQFAPRGYYFATASHDQTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNS------------------- 547 (707)
T ss_pred eeeEEecCCceEEEecCCCceeeeeeccc---------CCchhhhcccccccceEEECCcc-------------------
Confidence 99999999999999999999999999864 56788999999999999999986
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
.++++||.|.++++||+.++ ..+..+.+|..+|.+++|||+|++
T Consensus 548 -------~Y~aTGSsD~tVRlWDv~~G-----------------------------~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 548 -------NYVATGSSDRTVRLWDVSTG-----------------------------NSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -------cccccCCCCceEEEEEcCCC-----------------------------cEEEEecCCCCceEEEEEcCCCce
Confidence 69999999999999999873 346677899999999999999999
Q ss_pred EEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
|++|+.||.|.|||+.+|+++..+.+|++.|++|.|+. ++.+||+||.|.+|++||+..
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999 788999999999999999853
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.3e-31 Score=308.45 Aligned_cols=297 Identities=22% Similarity=0.366 Sum_probs=255.1
Q ss_pred cceeEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~T-g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
.-+.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++++.||..+|.+++|+.+|..+++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4467899999999999999999 899999999999999999976 89999999999999999999999999999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
++||+++|+++..+. -...++|+.|.|++. +.|++|+.|+.|+.||+++++.++.+ .
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~--n~fl~G~sd~ki~~wDiRs~kvvqeY--------------------d 339 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQ--NIFLVGGSDKKIRQWDIRSGKVVQEY--------------------D 339 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCC--cEEEEecCCCcEEEEeccchHHHHHH--------------------H
Confidence 999999999998887 456789999999984 48999999999999999999988776 3
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.|-+.|..+.|-++|..+++.+.|+.++||+.+.+. +.+.+... +.....++..+|.+
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v------~ik~i~~~--~~hsmP~~~~~P~~-------------- 397 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV------PIKNIADP--EMHTMPCLTLHPNG-------------- 397 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc------cchhhcch--hhccCcceecCCCC--------------
Confidence 477889999999999999999999999999997532 12222222 23345677778775
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC--CCeeEEE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGVNMIV 547 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~--~~VtsVa 547 (1491)
..++.-+.|+.|.++.+...- ......++.+|. +.-..+.
T Consensus 398 ------------~~~~aQs~dN~i~ifs~~~~~--------------------------r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 398 ------------KWFAAQSMDNYIAIFSTVPPF--------------------------RLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred ------------CeehhhccCceEEEEeccccc--------------------------ccCHhhhhcceeccCceeeEE
Confidence 688888999999998755311 112233445553 3456789
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
|||||++|++|..||.+.+||..+-+++..+.+|.+++..+.|||.....+|||+.||.|++|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999998889999999999999996
No 30
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.9e-30 Score=303.31 Aligned_cols=479 Identities=17% Similarity=0.202 Sum_probs=337.4
Q ss_pred CCcccccceeEEEE--ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000454 226 PSTMVQKMQNIKRV--RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA 303 (1491)
Q Consensus 226 ~~~~v~t~k~v~tL--~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASG 303 (1491)
..|++.+.+..+.| ..-...|+|+.-+++.-.||.|-.||.|+||+..++..+.++.||...|+++.|...|..||+|
T Consensus 46 n~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSG 125 (888)
T KOG0306|consen 46 NIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASG 125 (888)
T ss_pred eEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeec
Confidence 44666666433333 2344689999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 304 SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 304 S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
+.|+.|.|||+-...-+..+.||...|+.+-|..... +|++++.|+.|++||+.+..|..+..
T Consensus 126 skDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~---~lvS~sKDs~iK~WdL~tqhCf~Thv-------------- 188 (888)
T KOG0306|consen 126 SKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS---FLVSVSKDSMIKFWDLETQHCFETHV-------------- 188 (888)
T ss_pred CCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe---EEEEeccCceEEEEecccceeeeEEe--------------
Confidence 9999999999987777889999999999999998665 89999999999999999998877763
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCC---Cceee-eecCCCCCceEEEEccCccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP---NHEID-VLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~---~~~i~-~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.|.+.++.+++.+ +.+++++.|+.+.||++........... .+... ......+....+...++
T Consensus 189 ------d~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s----- 255 (888)
T KOG0306|consen 189 ------DHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS----- 255 (888)
T ss_pred ------cccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc-----
Confidence 4788999999987 7899999999999999943211100000 00000 00011111111111111
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCC-----------------------------------
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH----------------------------------- 504 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~----------------------------------- 504 (1491)
..++++-+.|..+.++.+.+....
T Consensus 256 ---------------------~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 256 ---------------------DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ---------------------ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence 112222233333333322221000
Q ss_pred ----------------------------ccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000454 505 ----------------------------PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 505 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1491)
.....| +.+... ......+.......+.+|...|.++++|.+...++
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~---ysl~~s--~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEW---YSLENS--GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEE---EEeccC--CCCCccccccceeeeccchhheeEEEeecCceeee
Confidence 000000 001110 00000111122245678999999999999988777
Q ss_pred EEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCC
Q 000454 557 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 557 SGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPD 636 (1491)
+|+ .+.|+||+..+.++++++..- .+.+..|.| +.+++++|...|.+.|||+.+...+.++..|.+.|++++.+||
T Consensus 390 Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 390 SGA-GESIKIWNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPD 465 (888)
T ss_pred ecC-CCcEEEEEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCC
Confidence 774 568999999999999999743 788999999 8889999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC-----Ccc-------------cccccceeeecCCCcceEEccCCCEEEccccccCccccC
Q 000454 637 GASIILSDDVGQLYILNTGQ-----GES-------------QKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNL 698 (1491)
Q Consensus 637 G~~LAsgs~DG~I~IWdl~t-----G~~-------------~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l 698 (1491)
++.+++|+.|.+|++|++.- |.. +..-...+.++||++.|++..-...+- ++-+
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk--------Vyfl 537 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK--------VYFL 537 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE--------EEEe
Confidence 99999999999999999831 111 011123457888888887665444321 1111
Q ss_pred CCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcc--ccccCCcccccccccccC
Q 000454 699 QDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD--VMIDPLPEFIDVMDWEPE 776 (1491)
Q Consensus 699 ~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~--~lieplp~~i~~~~W~P~ 776 (1491)
-+. ..|..++ ++.+.|+.|..|||++.+++| +.|..|.+|=+.-++ .-+=.+.+.+..+.+.|+
T Consensus 538 Dtl----------KFflsLY-GHkLPV~smDIS~DSklivTg---SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 538 DTL----------KFFLSLY-GHKLPVLSMDISPDSKLIVTG---SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred cce----------eeeeeec-ccccceeEEeccCCcCeEEec---cCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence 111 1123333 588999999999999999999 999999999886443 223334455566777775
Q ss_pred CcC-CCCCCCc
Q 000454 777 NEV-QSDDNDS 786 (1491)
Q Consensus 777 ~ev-~s~d~~~ 786 (1491)
.-. ++...|.
T Consensus 604 ~~~FFt~gKD~ 614 (888)
T KOG0306|consen 604 THLFFTCGKDG 614 (888)
T ss_pred ceeEEEecCcc
Confidence 554 3544443
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.9e-30 Score=315.69 Aligned_cols=294 Identities=31% Similarity=0.516 Sum_probs=255.0
Q ss_pred eeEEEEccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 000454 234 QNIKRVRGH-RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1491)
Q Consensus 234 k~v~tL~GH-~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIr 310 (1491)
.....+.+| ...|+|+.|+++|++|++++.++.|++|++.+++ .+..+.+|...|.+++|+|++.+|++++.|++|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 335666665 7899999999999999999999999999998888 7888899999999999999999999999999999
Q ss_pred EEEC-CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 311 VWRL-PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 311 VWDl-~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|||+ ..+..+.++.+|...|++++|+|+++ ++++|+.|++|+|||++++++...+ .
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~---~i~Sgs~D~tvriWd~~~~~~~~~l--------------------~ 285 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN---LLVSGSDDGTVRIWDVRTGECVRKL--------------------K 285 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCCC---EEEEecCCCcEEEEeccCCeEEEee--------------------e
Confidence 9999 56689999999999999999999996 8999999999999999998887776 4
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC--ceEEEEccCccccccccccCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.|...|.+++|+++|.+|++++.|+.|+|||+.++... ....+.++... +++++|+|++
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~------------ 346 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG------------ 346 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC------------
Confidence 58889999999999999999999999999999874310 34455555555 9999999986
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC---Cee
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVN 544 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~---~Vt 544 (1491)
.++++++.|+.+++||+...... ....+|.. .+.
T Consensus 347 --------------~~ll~~~~d~~~~~w~l~~~~~~-----------------------------~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 347 --------------KYLLSASLDRTLKLWDLRSGKSV-----------------------------GTYTGHSNLVRCIF 383 (456)
T ss_pred --------------cEEEEecCCCeEEEEEccCCcce-----------------------------eeecccCCcceeEe
Confidence 69999999999999999964421 22222322 345
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCC
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIW 613 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~lLaSgS--~DGtIrIWDl~ 613 (1491)
+..+++.|.++++|+.|+.|++|++.++..+..+.+| ...|..+.++| ...++++++ .|+.|++|...
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecCC
Confidence 5566889999999999999999999999999999999 88999999999 778888888 79999999763
No 32
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-29 Score=274.85 Aligned_cols=299 Identities=21% Similarity=0.302 Sum_probs=231.9
Q ss_pred CCCccccccccccccc-CccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 000454 189 HMYADQVRGLGLREIG-GGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLV 267 (1491)
Q Consensus 189 ~~h~d~V~~l~~r~~G-g~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtI 267 (1491)
.+|.+.|..++....+ ..+...+++..+...... ..+...+.+++.|.||...|..++.++||.+.++++.|+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~----~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLT----SDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEec----cCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4577777777665442 222333333333322211 12445577899999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccC--CCceEEEEecCCCCceEEE
Q 000454 268 KIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH--TAAVTAIAFSPRPGSVYQL 345 (1491)
Q Consensus 268 rIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gH--s~~VtsLaFSPdg~s~~~L 345 (1491)
++||+.+|+..+.|.||...|.+++|++|++.|++|+.|.+|++|++... +..++..+ ...|.|+.|+|.... .+|
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~-p~I 165 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN-PII 165 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC-cEE
Confidence 99999999999999999999999999999999999999999999998644 44444333 789999999999533 399
Q ss_pred EEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCC
Q 000454 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~ 425 (1491)
++++.|++|++||+++.+....+ .+|.+.++.+++||||.+.++|+.||.+.+||++.+
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~--------------------~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~- 224 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTF--------------------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG- 224 (315)
T ss_pred EEccCCceEEEEccCCcchhhcc--------------------ccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-
Confidence 99999999999999987765554 458999999999999999999999999999999753
Q ss_pred CCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCc
Q 000454 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 505 (1491)
Q Consensus 426 ~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~ 505 (1491)
+.+ ....|...|.+++|+|+. +.++...+..|+|||+.+.....
T Consensus 225 --------k~l-ysl~a~~~v~sl~fspnr---------------------------ywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 225 --------KNL-YSLEAFDIVNSLCFSPNR---------------------------YWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred --------cee-EeccCCCeEeeEEecCCc---------------------------eeEeeccCCceEEEeccchhhhh
Confidence 233 335678899999999974 66777777789999999755321
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECC
Q 000454 506 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1491)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~ 570 (1491)
. +.++.. ++ ..........+++|++||..|++|..|+.|++|.+.
T Consensus 269 ~-------l~~d~~-----------g~--s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 E-------LKLDGI-----------GP--SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred h-------cccccc-----------cc--ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 111100 00 111223345678999999999999999999999874
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-29 Score=291.34 Aligned_cols=288 Identities=17% Similarity=0.312 Sum_probs=253.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
..|++++|+.+|..||+|+.||.++||+.. |.++.+|..|.++|.+|.|+..|+||++++.|+++.|||..+|.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 479999999999999999999999999975 8889999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD 403 (1491)
.-|..+-..|.|-.+. .|++++.||.|+|+.+.....+.++ .+|.+.|.++.|+|.
T Consensus 315 ~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~~~~P~~t~--------------------~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND----EFATSSTDGCIHVCKVGEDRPVKTF--------------------IGHHGEVNALKWNPT 370 (524)
T ss_pred eeccCCccceEEecCc----eEeecCCCceEEEEEecCCCcceee--------------------ecccCceEEEEECCC
Confidence 9999888889998876 5999999999999999877666555 459999999999999
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
|.+|++++.|++++||.+.. ......+.+|...|..+.|+|.+... .....+..
T Consensus 371 g~LLaS~SdD~TlkiWs~~~---------~~~~~~l~~Hskei~t~~wsp~g~v~-----------------~n~~~~~~ 424 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQ---------SNSVHDLQAHSKEIYTIKWSPTGPVT-----------------SNPNMNLM 424 (524)
T ss_pred CceEEEecCCCeeEeeecCC---------CcchhhhhhhccceeeEeecCCCCcc-----------------CCCcCCce
Confidence 99999999999999999854 34567788999999999999987221 11122458
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1491)
+++++.|++|++||+..+ .++..+..|..+|.+++|||+|+++|+|+.||.
T Consensus 425 l~sas~dstV~lwdv~~g-----------------------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVESG-----------------------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred EEEeecCCeEEEEEccCC-----------------------------ceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 999999999999999863 456678889999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 564 IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
|.||++.++++++.+.+- +.|..|+|+-.+ ..|..+-.||.+++-|+.
T Consensus 476 V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGT-GGIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEeecCC-CeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 999999999999998764 559999999855 666667779999998874
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=270.52 Aligned_cols=295 Identities=15% Similarity=0.268 Sum_probs=257.0
Q ss_pred ceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEE
Q 000454 216 IRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAV 293 (1491)
Q Consensus 216 l~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLaf 293 (1491)
|.+++|+..+..|...++.+.++++...+.|+.+.+.||+++||+|+. -.|++||+.++. ++.++.+|...|+++.|
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 566678888888999999999999988899999999999999999876 569999998875 58899999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 294 SPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
..+|+++++|+.||+++|||++...+-+.+. |..+|+++..+|+.. .|+++..+|.|++||+....+...+.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~~li---- 163 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT---ELISGDQSGNIRVWDLGENSCTHELI---- 163 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc---eEEeecCCCcEEEEEccCCccccccC----
Confidence 9999999999999999999999876666665 779999999999977 89999999999999999876655542
Q ss_pred CCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc
Q 000454 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1491)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1491)
......|.++...|||.+|+.+...|..++|++-... ...+..++..+..|.+-+....++|
T Consensus 164 ---------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 164 ---------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred ---------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEEECC
Confidence 1134568999999999999999999999999996632 2334566778999999999999999
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
++ .+|+++|.|.+++||+..+. ....
T Consensus 226 d~--------------------------k~lat~ssdktv~iwn~~~~----------------------------~kle 251 (311)
T KOG0315|consen 226 DV--------------------------KYLATCSSDKTVKIWNTDDF----------------------------FKLE 251 (311)
T ss_pred CC--------------------------cEEEeecCCceEEEEecCCc----------------------------eeeE
Confidence 86 79999999999999988752 0223
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS 591 (1491)
..+.+|...+..++||.||+||++|+.|+.+++|++..++.+..+.||.....|++..
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4567888999999999999999999999999999999999999999999887777653
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.2e-29 Score=269.87 Aligned_cols=294 Identities=22% Similarity=0.383 Sum_probs=247.5
Q ss_pred ceeEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCC---CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMET---AYCLASCR-GHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpD-G~~LATGS~DGtIrIWDl~T---g~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
+-.++++.||.+.|..++|+|- |..||||+.|..|+||++.. ..+...+. +|+..|.+++|+|.|++||+|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567899999999999999998 99999999999999999984 34454443 7999999999999999999999999
Q ss_pred eEEEEECCCC--CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 308 IIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 308 tIrVWDl~tg--k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
++.||.-..+ +++.++.||...|.+++|+++|. +||+++.|..|-||.+..+......
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec~----------------- 143 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFECI----------------- 143 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEEE-----------------
Confidence 9999986544 78899999999999999999998 9999999999999998754432222
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
....+|...|..+.|+|...+|++++.|.+|++|.-.. .........+.+|...|.+++|.+.|
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------dddW~c~~tl~g~~~TVW~~~F~~~G---------- 207 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------DDDWECVQTLDGHENTVWSLAFDNIG---------- 207 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC------CCCeeEEEEecCccceEEEEEecCCC----------
Confidence 23466899999999999999999999999999998752 23477899999999999999999986
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
..|++++.|++++||-..+. ....|...+..
T Consensus 208 ----------------~rl~s~sdD~tv~Iw~~~~~---------------------------------~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 208 ----------------SRLVSCSDDGTVSIWRLYTD---------------------------------LSGMHSRALYD 238 (312)
T ss_pred ----------------ceEEEecCCcceEeeeeccC---------------------------------cchhcccceEe
Confidence 69999999999999964420 01235677888
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCC------ceEE-EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADG------SLVH-SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tg------kll~-tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
++|. ...|++++.|+.|+||-.... +++. .-..|...|++|+|.|....+|++|+.||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 558999999999999976542 1121 3356888999999999657889999999999999874
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=7.9e-31 Score=296.18 Aligned_cols=284 Identities=18% Similarity=0.271 Sum_probs=251.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
-...|..|.|.|+|+.|++|+..|.+.+|+..+......++.|..+|.++.|++++. ++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~---wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT---WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC---EEEEcCCCceEEecccchhh
Confidence 456899999999999999999999999999866666666789999999999999998 99999999999999986443
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.. .+ ...|...|.+++|+|+...|++++.||+|+|||... .+.-..+.+|.
T Consensus 172 Vk-~~-------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~---------~kee~vL~GHg 222 (464)
T KOG0284|consen 172 VK-II-------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM---------PKEERVLRGHG 222 (464)
T ss_pred hH-Hh-------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC---------CchhheeccCC
Confidence 21 11 123558899999999999999999999999999975 33456679999
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
-.|.+++|+|.. ..|++|+.|..|++||.+++.
T Consensus 223 wdVksvdWHP~k--------------------------gLiasgskDnlVKlWDprSg~--------------------- 255 (464)
T KOG0284|consen 223 WDVKSVDWHPTK--------------------------GLIASGSKDNLVKLWDPRSGS--------------------- 255 (464)
T ss_pred CCcceeccCCcc--------------------------ceeEEccCCceeEeecCCCcc---------------------
Confidence 999999999974 689999999999999999743
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~ 603 (1491)
++..+..|...|..+.|++++.+|++++.|..++++|+++.+.+.++++|...|++++|||-...+|++|+.
T Consensus 256 --------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 256 --------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred --------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 556677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 604 DGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 604 DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
||.|..|.+...+++..+. +|...|++++|+|=|..|++|+.|.++++|.-
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999998666665553 57779999999999999999999999999975
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=281.44 Aligned_cols=309 Identities=20% Similarity=0.314 Sum_probs=262.5
Q ss_pred CcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 000454 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND 306 (1491)
Q Consensus 227 ~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D 306 (1491)
.|...+...+..+.||...|+|+.|+.||.+||||.-+|.|+||...++.....+..-...|.-|.|+|-+..|++|+.|
T Consensus 90 lW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~D 169 (399)
T KOG0296|consen 90 LWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD 169 (399)
T ss_pred EEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCC
Confidence 46667777889999999999999999999999999999999999999999999987777889999999999999999999
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.|.+|.+.++...+.+.||..++++-.|.|+|+ .++++..||+|++|++.+++....+..
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy~dgti~~Wn~ktg~p~~~~~~---------------- 230 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGYDDGTIIVWNPKTGQPLHKITQ---------------- 230 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEecCceEEEEecCCCceeEEecc----------------
Confidence 9999999999888999999999999999999998 999999999999999999987666521
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1491)
.......++.++..+..++.|..++.+++-+..+++......+ ........+...+.+|.+.|....
T Consensus 231 ---~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~e~~~esve~~~~ss~--------- 297 (399)
T KOG0296|consen 231 ---AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQEELDESVESIPSSSK--------- 297 (399)
T ss_pred ---cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccchhhhhhhhhcccccc---------
Confidence 1244567889999999999999999999888876544322221 112223355666666666654210
Q ss_pred CCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEE
Q 000454 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1491)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 546 (1491)
-.++++|+.||+|.|||+...+ .+....|..+|+.+
T Consensus 298 --------------lpL~A~G~vdG~i~iyD~a~~~------------------------------~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 298 --------------LPLAACGSVDGTIAIYDLAAST------------------------------LRHICEHEDGVTKL 333 (399)
T ss_pred --------------cchhhcccccceEEEEecccch------------------------------hheeccCCCceEEE
Confidence 1478999999999999998632 34456688889999
Q ss_pred EEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 547 afSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.|-+ ..+|++++.+|.|++||.++|+++.++.||...|.+++++| +.++++|+|.|++.+||++.
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9998 78999999999999999999999999999999999999999 78899999999999999874
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.2e-30 Score=294.62 Aligned_cols=282 Identities=21% Similarity=0.366 Sum_probs=245.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
-...|..|.|.|+|++|++|+..|.+.+|+..+......+..|..+|.++.|+++|.++++|+.+|.|++|+.. ...+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhH
Confidence 34689999999999999999999999999986555455567899999999999999999999999999999964 34455
Q ss_pred eeccCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 322 VLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 322 ~L~gHs-~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
.+.+|. ..|++++|+|... .|++++.||+|+|||....+....+ .+|...|.|++|
T Consensus 174 ~~~ahh~eaIRdlafSpnDs---kF~t~SdDg~ikiWdf~~~kee~vL--------------------~GHgwdVksvdW 230 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS---KFLTCSDDGTIKIWDFRMPKEERVL--------------------RGHGWDVKSVDW 230 (464)
T ss_pred HhhHhhhhhhheeccCCCCc---eeEEecCCCeEEEEeccCCchhhee--------------------ccCCCCcceecc
Confidence 555554 8999999999876 8999999999999998766544333 568999999999
Q ss_pred CCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 401 SPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
+|...+||+|+.|..|++||.++ ..++..+.+|...|..+.|.+++
T Consensus 231 HP~kgLiasgskDnlVKlWDprS---------g~cl~tlh~HKntVl~~~f~~n~------------------------- 276 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRS---------GSCLATLHGHKNTVLAVKFNPNG------------------------- 276 (464)
T ss_pred CCccceeEEccCCceeEeecCCC---------cchhhhhhhccceEEEEEEcCCC-------------------------
Confidence 99999999999999999999987 56788899999999999999986
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEe
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAI 559 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs 559 (1491)
++|+++|.|..++++|+++. ..+..+.+|...|++++|+|-. .+|.+|+
T Consensus 277 -N~Llt~skD~~~kv~DiR~m-----------------------------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 277 -NWLLTGSKDQSCKVFDIRTM-----------------------------KELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -CeeEEccCCceEEEEehhHh-----------------------------HHHHHhhcchhhheeeccccccccceeecc
Confidence 79999999999999999952 2355677899999999999954 5677899
Q ss_pred ccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 560 MDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 560 ~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.||.|..|.+...+++..+ .+|...|++++|+| =+.+|++|+.|.++++|.-
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 9999999999865665554 58999999999999 7799999999999999975
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=4.7e-30 Score=310.53 Aligned_cols=281 Identities=20% Similarity=0.311 Sum_probs=238.1
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
++.++..-...++|..|++|+.+||.|..|..|++|.+... .+..+++ ..+-. .+=+.+.|-.+.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-------~~~l~------~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-------ASDLS------NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-------hhhhc------cccccccchhhhh
Confidence 34445445667999999999999999999999999998644 3333331 11211 1223333433555
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
.|-........ ..+|.++|..+.|+|+.++|++++.|++||+|.+.+ ...+
T Consensus 436 ~D~~~~~~~~~--------------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t---------~s~~ 486 (707)
T KOG0263|consen 436 LDDDSSGTSRT--------------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT---------WSCL 486 (707)
T ss_pred ccccCCceeEE--------------------eecCCCceeeeeecccccceeeccCCcceeeeeccc---------ceeE
Confidence 55544433332 256999999999999999999999999999999976 5677
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
....||..+|+.++|+|.| -+|||+|.|++.++|....
T Consensus 487 V~y~GH~~PVwdV~F~P~G--------------------------yYFatas~D~tArLWs~d~---------------- 524 (707)
T KOG0263|consen 487 VIYKGHLAPVWDVQFAPRG--------------------------YYFATASHDQTARLWSTDH---------------- 524 (707)
T ss_pred EEecCCCcceeeEEecCCc--------------------------eEEEecCCCceeeeeeccc----------------
Confidence 8889999999999999987 4899999999999997764
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
..+...+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.||.++|.+|+|+| +++
T Consensus 525 -------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr 590 (707)
T KOG0263|consen 525 -------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGR 590 (707)
T ss_pred -------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCc
Confidence 246677889999999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
+|++|+.||.|.|||+.+|.++..+.+|.+.|.++.||.||..||+|+.|..|++||+..
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999999999999854
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=7.3e-31 Score=289.91 Aligned_cols=275 Identities=27% Similarity=0.482 Sum_probs=236.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
....|+|+.+. ...+++|..|.+|+|||..+..++..+.||++.|.|+.|. .+.|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45689999996 4479999999999999999999999999999999999985 6699999999999999999999999
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
++-+|...|..+.|+.. ++++++.|.+|.+||+.....
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~------------------------------------- 309 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTD------------------------------------- 309 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchH-------------------------------------
Confidence 99999999999999875 899999999999999853220
Q ss_pred CCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
......+.||...|+.+.|+.
T Consensus 310 -------------------------------it~rrVLvGHrAaVNvVdfd~---------------------------- 330 (499)
T KOG0281|consen 310 -------------------------------ITLRRVLVGHRAAVNVVDFDD---------------------------- 330 (499)
T ss_pred -------------------------------HHHHHHHhhhhhheeeecccc----------------------------
Confidence 123455678888888888873
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1491)
.++++++.|.+|++|++.+.. .+..+.+|..+|.|+.+ .|+++++|+.|
T Consensus 331 kyIVsASgDRTikvW~~st~e-----------------------------fvRtl~gHkRGIAClQY--r~rlvVSGSSD 379 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCE-----------------------------FVRTLNGHKRGIACLQY--RDRLVVSGSSD 379 (499)
T ss_pred ceEEEecCCceEEEEecccee-----------------------------eehhhhcccccceehhc--cCeEEEecCCC
Confidence 488899999999999888633 34556778888888775 68999999999
Q ss_pred ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---------eEEEEeeCCcceEEEE
Q 000454 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI---------PIRIYEISRFRLVDGK 632 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk---------~l~~l~~h~~~Vtsla 632 (1491)
.+|++||+..|.+++.+.||..-|.+|.| +..-+++|++||+|+|||+..+. ++..+..|.+.|..+.
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 99999999999999999999999999999 45777899999999999998763 4455666888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 633 FSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 633 fSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
| |...|++++.|.+|.|||+-.+
T Consensus 457 F--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 457 F--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred e--cceEEEeccCCCeEEEEEcCCC
Confidence 9 5678999999999999999766
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=266.28 Aligned_cols=288 Identities=24% Similarity=0.379 Sum_probs=238.4
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
+.++.|.+|.++|.++.|+-||+|.+|++.|.+|++|+...|.+++++.+|...|.+++.+.|+..+++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
+.+|+.++.+.+|.+.|+.++|..+.. .+++|+.|.+|++||.+.....+.
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS---Vv~SgsfD~s~r~wDCRS~s~ePi-------------------------- 138 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS---VVASGSFDSSVRLWDCRSRSFEPI-------------------------- 138 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce---EEEeccccceeEEEEcccCCCCcc--------------------------
Confidence 999999999999999999999999887 899999999999999875442211
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
+.+......|.+|.+..
T Consensus 139 -------------------------------------------Qildea~D~V~Si~v~~-------------------- 155 (307)
T KOG0316|consen 139 -------------------------------------------QILDEAKDGVSSIDVAE-------------------- 155 (307)
T ss_pred -------------------------------------------chhhhhcCceeEEEecc--------------------
Confidence 11111223344444432
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
..|++|+.||+++.||++.++.. ..-...+|++++|++||+
T Consensus 156 --------heIvaGS~DGtvRtydiR~G~l~-------------------------------sDy~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 156 --------HEIVAGSVDGTVRTYDIRKGTLS-------------------------------SDYFGHPITSVSFSKDGN 196 (307)
T ss_pred --------cEEEeeccCCcEEEEEeecceee-------------------------------hhhcCCcceeEEecCCCC
Confidence 36777777777777777754311 011235799999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcc-eEEE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP-FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDG 631 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP-dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~-Vtsl 631 (1491)
.+++++.|++|++.|-.+|++++.++||...-+.+..+- .....+++|+.||.|++||+.++..+..+..+... |+++
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl 276 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDL 276 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEee
Confidence 999999999999999999999999999998766554332 14578889999999999999999999999877776 8899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEE
Q 000454 632 KFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 632 afSPDG~~LAsgs~DG~I~IWd 653 (1491)
.+.|.-..|+++...+ +.+|-
T Consensus 277 ~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 277 SCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred ecccCccceeEecCCc-eecee
Confidence 9999988787776644 45553
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.6e-28 Score=319.69 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=237.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----e----EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeE
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----Y----CLASCRGHEGDITDLAVSS-NNALVASASNDCII 309 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg----~----~l~tL~gH~~~VtsLafSP-DG~lLASGS~DGtI 309 (1491)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . ....+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4469999999999999999999999999999997532 1 223333 356899999987 47899999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecC-CCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSP-dg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~ 388 (1491)
+|||+.+++.+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.++..+..+.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---~L~Sgs~Dg~v~iWd~~~~~~~~~~~------------------- 615 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---LLASGSDDGSVKLWSINQGVSIGTIK------------------- 615 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---EEEEEcCCCEEEEEECCCCcEEEEEe-------------------
Confidence 9999999999999999999999999997 555 89999999999999999887655542
Q ss_pred CCCCcceEEEEEC-CCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 389 GPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 389 ~~h~~~V~slafS-PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
....|.++.|+ ++|.+|++|+.||.|++||++... ..+..+.+|...|.++.|.+.
T Consensus 616 --~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~~------------- 672 (793)
T PLN00181 616 --TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVDS------------- 672 (793)
T ss_pred --cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeCC-------------
Confidence 22458899995 579999999999999999997531 234567799999999999742
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
..|++++.|++|++||+..... .....++..+.+|...+.+++
T Consensus 673 --------------~~lvs~s~D~~ikiWd~~~~~~-----------------------~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 673 --------------STLVSSSTDNTLKLWDLSMSIS-----------------------GINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred --------------CEEEEEECCCEEEEEeCCCCcc-----------------------ccCCcceEEEcCCCCCeeEEE
Confidence 4899999999999999874210 001234456677888899999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEE-------------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSL-------------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-------------~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
|++++.+|++|+.|+.|+||+.....++..+ ..|...|.+++|+| ++.+|++|+.||.|+||++
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 9999999999999999999998766544322 23456799999999 6678889999999999996
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.7e-28 Score=318.54 Aligned_cols=303 Identities=15% Similarity=0.284 Sum_probs=245.4
Q ss_pred CCeEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----C----ceeeeccCCCce
Q 000454 264 DRLVKIWSMETAYCLASCR-----GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----L----PISVLRGHTAAV 330 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~-----gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg----k----~i~~L~gHs~~V 330 (1491)
+|.+++|+..+......+. .|.+.|.+++|+|+|++||+|+.|+.|+||++... . ++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 6789999988776655443 58999999999999999999999999999997542 1 222333 34679
Q ss_pred EEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEE
Q 000454 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 409 (1491)
Q Consensus 331 tsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~Las 409 (1491)
.+++|++... .+|++++.||+|++||+.+++.+..+ ..|...|++++|+| ++.+|++
T Consensus 536 ~~l~~~~~~~--~~las~~~Dg~v~lWd~~~~~~~~~~--------------------~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 536 SGICWNSYIK--SQVASSNFEGVVQVWDVARSQLVTEM--------------------KEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eeEEeccCCC--CEEEEEeCCCeEEEEECCCCeEEEEe--------------------cCCCCCEEEEEEcCCCCCEEEE
Confidence 9999998633 28999999999999999887655444 34788899999997 7899999
Q ss_pred ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC
Q 000454 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1491)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~ 489 (1491)
|+.||.|++||+.++ ..+..+..+ ..|.++.|.+.. +..|++|+.
T Consensus 594 gs~Dg~v~iWd~~~~---------~~~~~~~~~-~~v~~v~~~~~~-------------------------g~~latgs~ 638 (793)
T PLN00181 594 GSDDGSVKLWSINQG---------VSIGTIKTK-ANICCVQFPSES-------------------------GRSLAFGSA 638 (793)
T ss_pred EcCCCEEEEEECCCC---------cEEEEEecC-CCeEEEEEeCCC-------------------------CCEEEEEeC
Confidence 999999999999753 344445444 578899986432 368999999
Q ss_pred CCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 490 DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
||.|++||++..+ .+...+.+|...|.++.|. ++.+|++++.|+.|+|||+
T Consensus 639 dg~I~iwD~~~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 639 DHKVYYYDLRNPK----------------------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred CCeEEEEECCCCC----------------------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 9999999987522 1233455788899999997 7889999999999999999
Q ss_pred CC------CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------------eCCcceEE
Q 000454 570 AD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-------------ISRFRLVD 630 (1491)
Q Consensus 570 ~t------gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~-------------~h~~~Vts 630 (1491)
.. +.++..+.+|...+.+++|+| ++.+|++|+.|+.|+||+.....++..+. .+...|.+
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 74 367889999999999999999 56799999999999999987766554332 12346899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 631 GKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 631 lafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
++|+|++.+|++|+.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999986
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=288.47 Aligned_cols=294 Identities=18% Similarity=0.260 Sum_probs=264.9
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEc
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD 358 (1491)
+++..++..|.+|.|+|...+++++-.+|.|.||+.++...+..+.-..-+|.+..|-+..+ .+++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn---Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN---WIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc---eEEEecCCceEEEEe
Confidence 34556889999999999999999999999999999999999999998889999999999876 999999999999999
Q ss_pred cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeee
Q 000454 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438 (1491)
Q Consensus 359 l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~ 438 (1491)
..+++.+..+ ..|...|.|++.+|.-.++++++.|-.|++|+... .+.+...
T Consensus 84 ynt~ekV~~F--------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--------~wa~~qt 135 (794)
T KOG0276|consen 84 YNTGEKVKTF--------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--------EWACEQT 135 (794)
T ss_pred cccceeeEEe--------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccC--------ceeeeeE
Confidence 9999887776 34899999999999999999999999999999965 3778899
Q ss_pred ecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCC
Q 000454 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1491)
Q Consensus 439 l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~ 518 (1491)
+.||..-|.+|+|.|.. .+.|++++-|++|++|.+.+.
T Consensus 136 feGH~HyVMqv~fnPkD-------------------------~ntFaS~sLDrTVKVWslgs~----------------- 173 (794)
T KOG0276|consen 136 FEGHEHYVMQVAFNPKD-------------------------PNTFASASLDRTVKVWSLGSP----------------- 173 (794)
T ss_pred EcCcceEEEEEEecCCC-------------------------ccceeeeeccccEEEEEcCCC-----------------
Confidence 99999999999999974 578999999999999988752
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC--CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN--RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG--~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
.+..++.+|..+|+|+.|-+.| .+|++|+.|.+|+|||.++..|+++|.||...|..+.||| .--
T Consensus 174 ------------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lp 240 (794)
T KOG0276|consen 174 ------------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELP 240 (794)
T ss_pred ------------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCc
Confidence 3456678999999999998865 5999999999999999999999999999999999999999 556
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
+++||+.||+++||...+-++..++..+-..|+|++-.+.+..+++|.+.|.|. ..++.+++
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP 302 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP 302 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC
Confidence 888999999999999999999999988889999999999999999998877664 46666554
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-28 Score=292.56 Aligned_cols=304 Identities=21% Similarity=0.370 Sum_probs=264.1
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
|..-+..|..++|+|...+|+++-..|.|.+||..-+.++..|..|.++|..|+|+|++.++++|+.|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
++.++.||-..|..+.|++.-. .|++++.|.+|+||++.+.+++..+ .+|.+.|.|.
T Consensus 85 clftL~GHlDYVRt~~FHheyP---WIlSASDDQTIrIWNwqsr~~iavl--------------------tGHnHYVMcA 141 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYP---WILSASDDQTIRIWNWQSRKCIAVL--------------------TGHNHYVMCA 141 (1202)
T ss_pred ehhhhccccceeEEeeccCCCc---eEEEccCCCeEEEEeccCCceEEEE--------------------ecCceEEEee
Confidence 9999999999999999999877 9999999999999999999988877 5699999999
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCC---CC----------------CC-CCceeeeecCCCCCceEEEEccCcccc
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTD---DS----------------DQ-PNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~---~s----------------~~-~~~~i~~l~gH~~~V~sVafSpdg~as 458 (1491)
.|+|...++++++-|.+|+|||+...... .. .+ ..-....+.||...|+.++|+|..
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--- 218 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--- 218 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc---
Confidence 99999999999999999999998532110 00 00 111234678999999999999864
Q ss_pred ccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|++|+.|..|++|.+...+ . ..+....+
T Consensus 219 -----------------------pliVSG~DDRqVKlWrmnetK------a---------------------WEvDtcrg 248 (1202)
T KOG0292|consen 219 -----------------------PLIVSGADDRQVKLWRMNETK------A---------------------WEVDTCRG 248 (1202)
T ss_pred -----------------------ceEEecCCcceeeEEEecccc------c---------------------eeehhhhc
Confidence 589999999999999877422 1 23445678
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
|...|.++.|+|...+|++.+.|+.|+|||+...+.++++.-..+..+.++.|| ...++ .+++|+-+.||.+....+.
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLf-AAgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLF-AAGHDSGMIVFKLERERPA 326 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-Cccee-eeecCCceEEEEEcccCce
Confidence 999999999999999999999999999999999999999988888999999999 55555 5788999999998655544
Q ss_pred EE
Q 000454 619 RI 620 (1491)
Q Consensus 619 ~~ 620 (1491)
..
T Consensus 327 ~~ 328 (1202)
T KOG0292|consen 327 YA 328 (1202)
T ss_pred EE
Confidence 33
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-29 Score=281.67 Aligned_cols=292 Identities=19% Similarity=0.281 Sum_probs=246.9
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGt 353 (1491)
..+.+..|...|+-+.||++|+|||+++.|.+..||.+... +...++.+|..+|..|.|+||.+ +|++|+.+..
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDEV 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchHh
Confidence 34567789999999999999999999999999999987654 34778889999999999999998 9999999999
Q ss_pred EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 354 VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
+.+||+.+|.+...+. .++...+.+++|.|||..|++|+.|+.|..||+..
T Consensus 293 ~~lwDv~tgd~~~~y~-------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---------- 343 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---------- 343 (519)
T ss_pred eeeccCCcchhhhhcc-------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc----------
Confidence 9999999998765542 12457799999999999999999999999999963
Q ss_pred ceeeeecCCC-CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccc
Q 000454 434 HEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1491)
Q Consensus 434 ~~i~~l~gH~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~ 512 (1491)
..+....+-. ..|.+++.+++| ..+++...|..|++++..+..
T Consensus 344 n~~~~W~gvr~~~v~dlait~Dg--------------------------k~vl~v~~d~~i~l~~~e~~~---------- 387 (519)
T KOG0293|consen 344 NILGNWEGVRDPKVHDLAITYDG--------------------------KYVLLVTVDKKIRLYNREARV---------- 387 (519)
T ss_pred chhhcccccccceeEEEEEcCCC--------------------------cEEEEEecccceeeechhhhh----------
Confidence 2333334332 468899999886 688888899999999877522
Q ss_pred ccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCC--eEEEEE
Q 000454 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES--TYVLDV 590 (1491)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~--VtsLaf 590 (1491)
...+.....+|+++++|.||+++++.-.+..|++||++...++..+.||... |..-+|
T Consensus 388 --------------------dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 388 --------------------DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred --------------------hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 1113445678999999999999999999999999999999999999999865 333356
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG-~~LAsgs~DG~I~IWdl~t 656 (1491)
--.+..++++|+.|+.|+||+..+|+++..+.+|...|.+++|+|.. .++|++++||+|+||....
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 55455899999999999999999999999999999999999999955 5778999999999998753
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=273.07 Aligned_cols=316 Identities=21% Similarity=0.341 Sum_probs=253.7
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
.++.+.+.+|.++|.||++.|.+.++++|+.|++|+|||+.+|+...++.||-..|..++|++.-. ||++++.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp---YlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP---YLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc---eEEEecCCCee
Confidence 456678889999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
+.||+...+.+..+ .+|-..|.|++..|.-.
T Consensus 218 KCwDLe~nkvIR~Y--------------------hGHlS~V~~L~lhPTld----------------------------- 248 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY--------------------HGHLSGVYCLDLHPTLD----------------------------- 248 (460)
T ss_pred EEEechhhhhHHHh--------------------ccccceeEEEeccccce-----------------------------
Confidence 99999877655443 23444455555554444
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.|++|+.|.++++||+++.
T Consensus 249 ------------------------------------------------vl~t~grDst~RvWDiRtr------------- 267 (460)
T KOG0285|consen 249 ------------------------------------------------VLVTGGRDSTIRVWDIRTR------------- 267 (460)
T ss_pred ------------------------------------------------eEEecCCcceEEEeeeccc-------------
Confidence 4555555555555555542
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd 594 (1491)
..+..+.+|...|..+.+.|-...+++|+.|++|++||+..|+...++..|...|.+++.+| .
T Consensus 268 ----------------~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~ 330 (460)
T KOG0285|consen 268 ----------------ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-K 330 (460)
T ss_pred ----------------ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-c
Confidence 23445677889999999999889999999999999999999999999999999999999999 7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCc
Q 000454 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYR 674 (1491)
Q Consensus 595 ~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r 674 (1491)
..++|+++.| .|+-|++..|..+..+.+|..-|.+++...|| ++++|++.|.|.+||..+|..++..
T Consensus 331 e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~----------- 397 (460)
T KOG0285|consen 331 ENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG----------- 397 (460)
T ss_pred hhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc-----------
Confidence 7888888877 59999999999999999999999999998887 6888999999999999887433321
Q ss_pred ceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccC
Q 000454 675 PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1491)
Q Consensus 675 ~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~ 754 (1491)
++. ..|..+. +..++...+|...|.+|.++ ..|.+|.+|--
T Consensus 398 -------------~t~------------------vqpGSl~-----sEagI~as~fDktg~rlit~---eadKtIk~~ke 438 (460)
T KOG0285|consen 398 -------------QTI------------------VQPGSLE-----SEAGIFASCFDKTGSRLITG---EADKTIKMYKE 438 (460)
T ss_pred -------------ccc------------------ccCCccc-----cccceeEEeecccCceEEec---cCCcceEEEec
Confidence 111 1112222 34567778999999999999 89999999976
Q ss_pred CCccccccCCcccccccccccCCc
Q 000454 755 ADLDVMIDPLPEFIDVMDWEPENE 778 (1491)
Q Consensus 755 ~~~~~lieplp~~i~~~~W~P~~e 778 (1491)
.+ ...+-..++.|.|+..
T Consensus 439 De------~aT~EthPl~w~P~~~ 456 (460)
T KOG0285|consen 439 DE------HATEETHPLNWKPELL 456 (460)
T ss_pred cc------ccCcccCCcCCCCchh
Confidence 32 2222233477999765
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=299.63 Aligned_cols=290 Identities=26% Similarity=0.410 Sum_probs=252.1
Q ss_pred EEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC--ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 279 ASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 279 ~tL~g-H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
..+.+ +...|.++.|+++|++|++++.++.|++|++.++. .+..+.+|...|.+++|+|++. ++++++.|++|+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~tir 228 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTLR 228 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceEE
Confidence 34444 47899999999999999999999999999998877 7778889999999999999998 999999999999
Q ss_pred EEccC-CCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 356 IWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 356 IWDl~-tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
|||+. .+.++..+ .+|...|++++|+|+|+++++|+.|++|+|||+++ ..
T Consensus 229 iwd~~~~~~~~~~l--------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---------~~ 279 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTL--------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---------GE 279 (456)
T ss_pred EeeccCCCeEEEEe--------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---------Ce
Confidence 99994 44555554 46999999999999999999999999999999976 56
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.+..+.+|.+.|.+++|++++ ..|++++.||.|+|||+.++...
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~--------------------------~~l~s~s~d~~i~vwd~~~~~~~---------- 323 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDG--------------------------NLLVSASYDGTIRVWDLETGSKL---------- 323 (456)
T ss_pred EEEeeeccCCceEEEEECCCC--------------------------CEEEEcCCCccEEEEECCCCcee----------
Confidence 789999999999999999986 68999999999999999974411
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeE---EEE
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY---VLD 589 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~Vt---sLa 589 (1491)
....+..+.. .+++++|+|++.+|++++.|+.+++||+..+.++..+.+|...+. +..
T Consensus 324 -----------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 324 -----------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -----------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 0112222222 589999999999999999999999999999999999999988643 334
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC-CcceEEEEEcCCCCEEEEEe--CCCcEEEEEC
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSD--DVGQLYILNT 654 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h-~~~VtslafSPDG~~LAsgs--~DG~I~IWdl 654 (1491)
.++ ++.++++|+.|+.|.+|++.++..+..+.+| ...+..+.|+|...++++++ .|+.|++|..
T Consensus 387 ~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 387 LST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 455 7789999999999999999999999999999 88899999999999999987 7899999975
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-29 Score=279.38 Aligned_cols=282 Identities=22% Similarity=0.359 Sum_probs=244.7
Q ss_pred ceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCeEEEEEc
Q 000454 216 IRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 216 l~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T-g~~l~tL~gH~~~VtsLafS 294 (1491)
++++.-...+-.|++.++++.+.|+||++.|..|+|+..|++||+++.|-.+++||..+ .++++.+.+|...|.+++|-
T Consensus 123 v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~ 202 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL 202 (406)
T ss_pred EEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE
Confidence 33333344455678888999999999999999999999999999999999999999987 67888899999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
|.|.+|++++.|.+|+.|++.+|.++.++.+|...|..++.+.||. ++++++.|.+|++|-+.++++...+
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt---i~As~s~dqtl~vW~~~t~~~k~~l------ 273 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT---IIASCSNDQTLRVWVVATKQCKAEL------ 273 (406)
T ss_pred ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee---EEEecCCCceEEEEEeccchhhhhh------
Confidence 9999999999999999999999999999999999999999999997 9999999999999999998776665
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
..|...|.|++|.|...+ .. |.+. .+.. +
T Consensus 274 --------------R~hEh~vEci~wap~~~~--~~-------i~~a------------------t~~~----------~ 302 (406)
T KOG0295|consen 274 --------------REHEHPVECIAWAPESSY--PS-------ISEA------------------TGST----------N 302 (406)
T ss_pred --------------hccccceEEEEecccccC--cc-------hhhc------------------cCCC----------C
Confidence 458889999999986431 00 0000 0000 0
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
+ ...+++++.|++|++||+.++ ..+.
T Consensus 303 ~-------------------------~~~l~s~SrDktIk~wdv~tg-----------------------------~cL~ 328 (406)
T KOG0295|consen 303 G-------------------------GQVLGSGSRDKTIKIWDVSTG-----------------------------MCLF 328 (406)
T ss_pred C-------------------------ccEEEeecccceEEEEeccCC-----------------------------eEEE
Confidence 1 258999999999999999973 3567
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.+.+|...|..++|+|.|+||+++..|++++|||+.++++++++..|..-|++++|+. ..-+++||+-|.++++|..
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 7889999999999999999999999999999999999999999999999999999998 5558889999999999964
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.5e-29 Score=288.43 Aligned_cols=291 Identities=19% Similarity=0.300 Sum_probs=252.1
Q ss_pred CeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCC
Q 000454 275 AYCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG 352 (1491)
.+.+.++.||...|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|++++. .|++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecce
Confidence 356778899999999999999 899999999999999999976 899999999999999999999998 899999999
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
.|++||+++|+++..+. ....++|+.|.|++ +.|++|+.|+.|+.||+++
T Consensus 281 ~lKlwDtETG~~~~~f~---------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-------- 331 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH---------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-------- 331 (503)
T ss_pred eeeeeccccceEEEEEe---------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc--------
Confidence 99999999999988874 34568999999998 8999999999999999987
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
...+..+..|-+.|..|.|-+.+ .++++.+.|++++||+....-.+.
T Consensus 332 -~kvvqeYd~hLg~i~~i~F~~~g--------------------------~rFissSDdks~riWe~~~~v~ik------ 378 (503)
T KOG0282|consen 332 -GKVVQEYDRHLGAILDITFVDEG--------------------------RRFISSSDDKSVRIWENRIPVPIK------ 378 (503)
T ss_pred -hHHHHHHHhhhhheeeeEEccCC--------------------------ceEeeeccCccEEEEEcCCCccch------
Confidence 45677888999999999999886 699999999999999987532110
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC---ceEEEEeCCCC--CeE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG---SLVHSLTGHTE--STY 586 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg---kll~tL~gHs~--~Vt 586 (1491)
...........++..+|++.++++-+.|+.|.||.+... .....+.||.. --.
T Consensus 379 ----------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 379 ----------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ----------------------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 011123334668999999999999999999999997543 23346778864 456
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 000454 587 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILN 653 (1491)
Q Consensus 587 sLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG-~~LAsgs~DG~I~IWd 653 (1491)
.+.||| ++.+|++|+.||.+.+||..+-+++..+..|...++.+.|+|.. ..||+++.+|.|+||+
T Consensus 437 ~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 689999 78899999999999999999999999999999999999999964 5688899999999996
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.2e-27 Score=255.17 Aligned_cols=293 Identities=20% Similarity=0.299 Sum_probs=240.7
Q ss_pred EEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---Cceeee-ccCCCceEEEEecCCCCceEEEEEEeCC
Q 000454 277 CLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDG---LPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPD-G~lLASGS~DGtIrVWDl~tg---k~i~~L-~gHs~~VtsLaFSPdg~s~~~LaSgS~D 351 (1491)
.++.+.+|.+.|..++|+|- |..||+|+.|+.|+||+...+ .+...+ .+|+..|..++|+|.++ +|++++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSFD 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASFD 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeecc
Confidence 46778899999999999998 889999999999999998753 333334 37999999999999998 99999999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
+++.||.-..+.+...- ...+|...|.|++|+++|.+||+++.|..|-||.+.. ..
T Consensus 83 ~t~~Iw~k~~~efecv~------------------~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de------dd 138 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVA------------------TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE------DD 138 (312)
T ss_pred ceEEEeecCCCceeEEe------------------eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC------CC
Confidence 99999987655543322 2356999999999999999999999999999999863 23
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
....+..+..|+..|..+.|+|.. +.|+++|.|.+|++|.-... ..|
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~--------------------------dlL~S~SYDnTIk~~~~~~d------ddW- 185 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTE--------------------------DLLFSCSYDNTIKVYRDEDD------DDW- 185 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCc--------------------------ceeEEeccCCeEEEEeecCC------CCe-
Confidence 367888999999999999999964 69999999999999975521 111
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS 591 (1491)
...+.+.+|...|.+++|++.|..|++++.|++|+||-..+.- -..|...++.++|.
T Consensus 186 -------------------~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 186 -------------------ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD 242 (312)
T ss_pred -------------------eEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec
Confidence 3456677888899999999999999999999999999865221 12477889999996
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCC------ceEE-EEeeCCcceEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEG------IPIR-IYEISRFRLVDGKFSPD-GASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tG------k~l~-~l~~h~~~VtslafSPD-G~~LAsgs~DG~I~IWdl~ 655 (1491)
...|+|++.|+.|+||.-..+ .++. .-..|...|.+++|.|. ...|++|++||.|.+|.+.
T Consensus 243 ---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 ---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 468899999999999987643 1111 22356778999999995 7789999999999999863
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4.1e-27 Score=258.33 Aligned_cols=287 Identities=20% Similarity=0.287 Sum_probs=243.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~-tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++. ..+-..++++|.++|..+.|.+++. .|++++.|.+|+.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEEE
Confidence 34567999999999999999999999999999999953 4566778899999999999999998 9999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
||+++|+...++ ..|..-|..+.-+.-| .++.+|+.|++++|||+++.. .
T Consensus 117 wD~~tG~~~rk~--------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---------~ 167 (338)
T KOG0265|consen 117 WDAETGKRIRKH--------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---------A 167 (338)
T ss_pred Eecccceeeehh--------------------ccccceeeecCccccCCeEEEecCCCceEEEEeecccc---------h
Confidence 999999987776 3477778888754445 466778899999999998632 2
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccc
Q 000454 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1491)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1491)
+.. ....-.++++.|...+ +.+++|+-|+.|++||++..
T Consensus 168 ~~t-~~~kyqltAv~f~d~s--------------------------~qv~sggIdn~ikvWd~r~~-------------- 206 (338)
T KOG0265|consen 168 IKT-FENKYQLTAVGFKDTS--------------------------DQVISGGIDNDIKVWDLRKN-------------- 206 (338)
T ss_pred hhc-cccceeEEEEEecccc--------------------------cceeeccccCceeeeccccC--------------
Confidence 222 2234568889998664 68999999999999999852
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC----CceEEEEeCCCC----CeEE
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----GSLVHSLTGHTE----STYV 587 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t----gkll~tL~gHs~----~Vts 587 (1491)
.....+.+|...|+.+..+++|.++.+-++|.++++||++- .+++..+.+|.. ....
T Consensus 207 ---------------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 207 ---------------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ---------------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 23556788999999999999999999999999999999964 355788887653 2356
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 588 LafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
.+|+| +.+.+.+|+.|..+++||......+..+.+|.+.|.++.|+|....|.+++.|.+|++=.
T Consensus 272 cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 272 CSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 78999 778888999999999999988899999999999999999999999999999999998743
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.5e-28 Score=265.49 Aligned_cols=288 Identities=23% Similarity=0.385 Sum_probs=246.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--------GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~--------gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
|....+-|..|||||+||++|+.||-|-||+..+|++.+.++ -+..+|.|+.|+.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 667789999999999999999999999999999998766543 478899999999999999999999999999
Q ss_pred ECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 313 Dl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
.+.+|.+++.|. .|+..|+|+.|+.|+. .+++++.|.+|+|--+..|+++..+ .+|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKEf--------------------rGH 347 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKEF--------------------RGH 347 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHHh--------------------cCc
Confidence 999999999997 8999999999999987 8999999999999999999998877 568
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
...|+...|.++|..+++++.||+|+||+..+..+.....+ .+..-.|..+...|..
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------~~~d~~vnsv~~~PKn---------------- 404 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------LGTDYPVNSVILLPKN---------------- 404 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-------CCCcccceeEEEcCCC----------------
Confidence 99999999999999999999999999999987655433322 2345567777777653
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
+..+++|...++|.|.++...- .+.+.. + ....+...+.++||.
T Consensus 405 ---------peh~iVCNrsntv~imn~qGQv--------VrsfsS-------------G------kREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 405 ---------PEHFIVCNRSNTVYIMNMQGQV--------VRSFSS-------------G------KREGGDFINAILSPK 448 (508)
T ss_pred ---------CceEEEEcCCCeEEEEeccceE--------Eeeecc-------------C------CccCCceEEEEecCC
Confidence 4689999999999998876311 000000 0 112344667789999
Q ss_pred CCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
|.++.+.+.|+.++.|...+|++-+++.-|...|..++-|| ...++|+-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999 778999999999999995
No 54
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=9.4e-26 Score=259.91 Aligned_cols=421 Identities=18% Similarity=0.249 Sum_probs=307.1
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEE-
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDR--------LVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASA- 303 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DG--------tIrIWDl~Tg~~l~tL~gH~~~VtsLafSP--DG~lLASG- 303 (1491)
..+.+.||...|.|++++||.-++|+|-.-| .|+|||..+...+..+......|+|++|++ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4567889999999999999998999885544 599999998888888888888999999998 34555554
Q ss_pred -ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 304 -SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 304 -S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
+.+..+.|||++.+......+.....|....|+|.+. -|+.....|.+.+|+++++.+..+.-+-
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~---nliit~Gk~H~~Fw~~~~~~l~k~~~~f----------- 241 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP---NLIITCGKGHLYFWTLRGGSLVKRQGIF----------- 241 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC---cEEEEeCCceEEEEEccCCceEEEeecc-----------
Confidence 3456789999999988888887888999999999987 4555555688999999988876665221
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1491)
.......|.|++|.++|. +++|.++|.|.||+..+ .+.......|.+.|.+++...+|
T Consensus 242 -----ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---------~~~~k~~~aH~ggv~~L~~lr~G------- 299 (626)
T KOG2106|consen 242 -----EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT---------NRISKQVHAHDGGVFSLCMLRDG------- 299 (626)
T ss_pred -----ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---------ceEEeEeeecCCceEEEEEecCc-------
Confidence 112336799999999997 67899999999999865 33444455999999999998876
Q ss_pred ccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCc--cccccc--ccc-------ccCCCCCCCCCCCCCCC
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP--KAARWT--QAY-------HLKVPPPPMPPQPPRGG 531 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~--~~~~~~--~~~-------~l~~~~~~~~~~~~~~~ 531 (1491)
.|++|+.|..|..||-.-.+... ....+. +.. -+...............
T Consensus 300 --------------------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 300 --------------------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred --------------------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 78889999999999833211100 000000 000 00000000000111223
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 532 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
......+|......++.+|+...+++++.|+.+++|+ ..+++.+.. -..++.|+.|+|.+ .+|.|...|...|.|
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLD 434 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEe
Confidence 3345567888899999999999999999999999999 445554433 34568899999955 888899999999999
Q ss_pred CCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccc
Q 000454 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQL 691 (1491)
Q Consensus 612 l~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~ 691 (1491)
.++...+..-. ...++.+++|+|+|.+||+|+.|+.|+||.+..+. ..+.
T Consensus 435 ~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g------------------------~~y~----- 484 (626)
T KOG2106|consen 435 TETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG------------------------RKYS----- 484 (626)
T ss_pred cccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC------------------------cEEE-----
Confidence 98865555544 48899999999999999999999999999985432 1111
Q ss_pred cCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCccccccCCccccccc
Q 000454 692 APHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVM 771 (1491)
Q Consensus 692 ~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~lieplp~~i~~~ 771 (1491)
.. +.| +...+..+.||+|+.+|... +.|..+..| .+.....+.+ ...+
T Consensus 485 ---r~----~k~-----------------~gs~ithLDwS~Ds~~~~~~---S~d~eiLyW-~~~~~~~~ts----~kDv 532 (626)
T KOG2106|consen 485 ---RV----GKC-----------------SGSPITHLDWSSDSQFLVSN---SGDYEILYW-KPSECKQITS----VKDV 532 (626)
T ss_pred ---Ee----eee-----------------cCceeEEeeecCCCceEEec---cCceEEEEE-ccccCcccce----ecce
Confidence 00 000 00123459999999999997 999999999 4433333333 5568
Q ss_pred ccccCCc
Q 000454 772 DWEPENE 778 (1491)
Q Consensus 772 ~W~P~~e 778 (1491)
.|..-.=
T Consensus 533 kW~t~~c 539 (626)
T KOG2106|consen 533 KWATYTC 539 (626)
T ss_pred eeeeeEE
Confidence 8876544
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=7.2e-27 Score=262.65 Aligned_cols=295 Identities=21% Similarity=0.364 Sum_probs=248.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
.|...|.+|... +++|++|+.||.++|||. .|+.+..+.+|+++|.+++|.-.+.....|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388999999887 779999999999999995 69999999999999999988655443347999999999999998877
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCC----------------
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT---------------- 426 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~---------------- 426 (1491)
....... ....+|...|-+++..++|..+++|+.|.+|.||+..+...
T Consensus 180 ~~~~~~~----------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 180 ENKVKAL----------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred hhhhhHH----------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 6443321 12237999999999999999999999999999999322111
Q ss_pred CCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcc
Q 000454 427 DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1491)
Q Consensus 427 ~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~ 506 (1491)
........++..+.+|..+|.+|.|++. ..+++++.|.+|+.||+.+++.
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---------------------------~v~yS~SwDHTIk~WDletg~~--- 293 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDA---------------------------TVIYSVSWDHTIKVWDLETGGL--- 293 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCC---------------------------CceEeecccceEEEEEeecccc---
Confidence 1112234567789999999999999974 4899999999999999997542
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc---eEEEEeCCCC
Q 000454 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS---LVHSLTGHTE 583 (1491)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk---ll~tL~gHs~ 583 (1491)
.........++++.++|..++|++|+.|..|++||.+++. ..++|.||.+
T Consensus 294 ---------------------------~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 294 ---------------------------KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred ---------------------------eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 1223345678999999999999999999999999998753 4568999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 584 ~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk-~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
.|.++.|+|.+..+|+++++|+++++||+++.+ ++..+.+|...|.++.|. ++.+|++|+.|.+|+|+..
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 999999999999999999999999999999887 999999999999999997 5668999999999999874
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.9e-28 Score=268.47 Aligned_cols=272 Identities=24% Similarity=0.423 Sum_probs=230.7
Q ss_pred CcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 000454 214 PSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV 293 (1491)
Q Consensus 214 ~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf 293 (1491)
..+.+...+..+-.|+.....+++.|.||++.|.|+.|.. +.|++|+.|.+|+|||+.+|+++.++-+|...|..+.|
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence 3344444555666789999999999999999999999964 59999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCC---ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeec
Q 000454 294 SSNNALVASASNDCIIRVWRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 294 SPDG~lLASGS~DGtIrVWDl~tgk---~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
+ +.++++++.|.+|.|||+.... +.+++.||.+.|..+.|+.. ++++++.|.+|++|++.+++++.++
T Consensus 286 ~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-----yIVsASgDRTikvW~~st~efvRtl-- 356 (499)
T KOG0281|consen 286 S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-----YIVSASGDRTIKVWSTSTCEFVRTL-- 356 (499)
T ss_pred e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-----eEEEecCCceEEEEeccceeeehhh--
Confidence 8 5699999999999999998764 44678899999999999764 8999999999999999999988776
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
.+|...|-|+.+ .|+++++|+.|.+|++||+.. +.++..+.||..-|.+|.
T Consensus 357 ------------------~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~---------G~cLRvLeGHEeLvRciR 407 (499)
T KOG0281|consen 357 ------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---------GACLRVLEGHEELVRCIR 407 (499)
T ss_pred ------------------hcccccceehhc--cCeEEEecCCCceEEEEeccc---------cHHHHHHhchHHhhhhee
Confidence 457888888887 589999999999999999976 567899999999999999
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (1491)
|.. ..+++|+.||+|++||+...... ..+...
T Consensus 408 Fd~----------------------------krIVSGaYDGkikvWdl~aaldp--------------------ra~~~~ 439 (499)
T KOG0281|consen 408 FDN----------------------------KRIVSGAYDGKIKVWDLQAALDP--------------------RAPAST 439 (499)
T ss_pred ecC----------------------------ceeeeccccceEEEEecccccCC--------------------cccccc
Confidence 974 58999999999999999863311 011122
Q ss_pred CCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE
Q 000454 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575 (1491)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll 575 (1491)
-.+..+..|.+.|..+.| |...|++++.|.+|.|||+.++..-
T Consensus 440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 344556678889999988 4568999999999999999877554
No 57
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=271.93 Aligned_cols=448 Identities=18% Similarity=0.220 Sum_probs=343.1
Q ss_pred ccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-E
Q 000454 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA-L 299 (1491)
Q Consensus 221 ~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~-l 299 (1491)
.......|.+.+.+.+.+++++...|+++.=+|--..+|.|..+|+|.|+++..++.+.+++...+.|+.++|.-||. +
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee
Confidence 344556789999999999999999999999999999999999999999999999999999995569999999999998 5
Q ss_pred EEEEECCCeEEEEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCccc
Q 000454 300 VASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 300 LASGS~DGtIrVWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
||+|+..|.+.+||++..+.+..+. .|.+.|..+.|.|... .|++++.|..+++|=.+++.-.+++
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~---------- 326 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRL---------- 326 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc---eEeeccCCCceeEEEeeCCCCcchh----------
Confidence 6777778999999999888877776 7889999999999877 9999999999999977655544333
Q ss_pred CCCCCCCCCCCCCCcceEEEEEC-CCCCEEEEecCCceEEEEeCCCCCCCCCCCCC------ceee---eecCCCCCceE
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPN------HEID---VLSGHENDVNY 448 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafS-PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~------~~i~---~l~gH~~~V~s 448 (1491)
.....+|..+..|+.|. .+|.++.+++.|++.+.+++............ +... .....-.+|..
T Consensus 327 ------LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 327 ------LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred ------eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 22345789999999998 68999999999999999987542211111000 0000 00111123333
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
+++...- ...| .+.+++.-.+..++.|+++.... +.|. +.
T Consensus 401 fa~~~~R-------------------E~~W--~Nv~~~h~~~~~~~tW~~~n~~~----G~~~----L~----------- 440 (910)
T KOG1539|consen 401 FAFENAR-------------------EKEW--DNVITAHKGKRSAYTWNFRNKTS----GRHV----LD----------- 440 (910)
T ss_pred eecccch-------------------hhhh--cceeEEecCcceEEEEeccCccc----ccEE----ec-----------
Confidence 3332210 1112 34566666778899999986431 1111 00
Q ss_pred CCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE---eCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL---~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
..++......+++++.++.|++.+.|...|.|-+|++++|-....+ ..|.++|++++... -++.+++++.+|
T Consensus 441 ----~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~G 515 (910)
T KOG1539|consen 441 ----PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADG 515 (910)
T ss_pred ----CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcc
Confidence 0111224457899999999999999999999999999999999988 58999999999976 557888999999
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc------cccceeeecCCCcceEEc
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQD 679 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~------~~~~~~~fs~D~r~La~d 679 (1491)
.+++||.....++..+.. ...+..+..+.....+|++.+|-.|.++|+.+.+..+ ....+..|++|+++|+..
T Consensus 516 ilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred eEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 999999999988888873 4467888889999999999999999999999876543 445788999999999988
Q ss_pred cCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCC-CcEEeccCCC
Q 000454 680 TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLD-QGYQLQPLAD 756 (1491)
Q Consensus 680 ~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d-~~v~lw~~~~ 756 (1491)
.....+ ..|+++++.+.-. +..+.++ .++.|||.|.+||+. ..| ..|-+|....
T Consensus 595 smD~tI--------r~wDlpt~~lID~-~~vd~~~-----------~sls~SPngD~LAT~---Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTI--------RTWDLPTGTLIDG-LLVDSPC-----------TSLSFSPNGDFLATV---HVDQNGIYLWSNKS 649 (910)
T ss_pred ecCCcE--------EEEeccCcceeee-EecCCcc-----------eeeEECCCCCEEEEE---EecCceEEEEEchh
Confidence 775554 3699887765332 3333333 359999999999998 555 4899998743
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.1e-27 Score=254.07 Aligned_cols=292 Identities=23% Similarity=0.316 Sum_probs=254.9
Q ss_pred EEEEecCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 278 LASCRGHEGDITDLAVSS---NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSP---DG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
-.++.||..+|..++||| +|-+|++++.|+.-.+-+-.+|.-+.+|.+|.+.|++.++..+.. ..++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~---~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT---RAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh---hhhhhcccchh
Confidence 346789999999999986 888999999999999999999999999999999999999988865 78899999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
+|||.-+|..+..+ .|..-|..++|+.|.++|++|+.+..++|||+..+ ..
T Consensus 84 kvw~a~tgdelhsf---------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p--------~A 134 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF---------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP--------KA 134 (334)
T ss_pred hhhhhhhhhhhhhh---------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCC--------CC
Confidence 99999988776655 27788999999999999999999999999999753 45
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
+...+.+|.+.|..+.|... ...|++.+.|++|++||.+++.
T Consensus 135 pp~E~~ghtg~Ir~v~wc~e--------------------------D~~iLSSadd~tVRLWD~rTgt------------ 176 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHE--------------------------DKCILSSADDKTVRLWDHRTGT------------ 176 (334)
T ss_pred CchhhcCCCCcceeEEEecc--------------------------CceEEeeccCCceEEEEeccCc------------
Confidence 66778999999999999865 3578888999999999999854
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd 594 (1491)
....+.....|+++.++++|++|.++ ..+.|.+||..+..+++.+... ..|.+...+| .
T Consensus 177 ------------------~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~ 235 (334)
T KOG0278|consen 177 ------------------EVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-K 235 (334)
T ss_pred ------------------EEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccC-C
Confidence 22233456679999999999987766 5678999999999999887643 4588899999 5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEE-eeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 000454 595 PRIAMSAGYDGKTIVWDIWEGIPIRIY-EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 595 ~~lLaSgS~DGtIrIWDl~tGk~l~~l-~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
..++++|+.|+.++.||..+|..+..+ .+|.++|.|+.|+|||...|+|+.||+|+||.+..++..
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 578889999999999999999999997 889999999999999999999999999999999877543
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=282.31 Aligned_cols=290 Identities=25% Similarity=0.464 Sum_probs=253.1
Q ss_pred EEEcc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 237 KRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 237 ~tL~G-H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t-L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
..+.+ |...|.|..|. +.++++++.+.+|++|+..++..+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 34444 67789999998 56899999999999999999999988 9999999999999987889999999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+|.++.++.+|...|.++...+. .+++|+.|.+|++|++.++.++..+ .+|...
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~-----~~~sgs~D~tVkVW~v~n~~~l~l~--------------------~~h~~~ 333 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPF-----LLVSGSRDNTVKVWDVTNGACLNLL--------------------RGHTGP 333 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCc-----eEeeccCCceEEEEeccCcceEEEe--------------------cccccc
Confidence 999999999999999999999886 7889999999999999999887776 348899
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
|.++.++ +.++++|+.|++|.||++.+ .+.+..+.+|...|.++.+.+.
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~---------~~cl~sl~gH~~~V~sl~~~~~-------------------- 382 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRT---------GKCLKSLSGHTGRVYSLIVDSE-------------------- 382 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhh---------ceeeeeecCCcceEEEEEecCc--------------------
Confidence 9999998 88999999999999999975 6789999999999999988752
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
..+++|+.|++|++||+.+.+ .++..+.+|..-+..+. ..+++
T Consensus 383 -------~~~~Sgs~D~~IkvWdl~~~~----------------------------~c~~tl~~h~~~v~~l~--~~~~~ 425 (537)
T KOG0274|consen 383 -------NRLLSGSLDTTIKVWDLRTKR----------------------------KCIHTLQGHTSLVSSLL--LRDNF 425 (537)
T ss_pred -------ceEEeeeeccceEeecCCchh----------------------------hhhhhhcCCcccccccc--cccce
Confidence 489999999999999999741 23444555666665544 46789
Q ss_pred EEEEeccceEEEEECCCCceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 555 VLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~tgkll~tL~g-Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
|++++.|++|++||..++++++++.+ |...|+.+++. ...+++++.||.+++||+.++++++.+..+
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 99999999999999999999999999 77888888875 457778999999999999999998877433
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.6e-26 Score=245.66 Aligned_cols=294 Identities=18% Similarity=0.236 Sum_probs=236.6
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
.|+||.-+++.|.|+.+|.+|++++.|.++.||-..+|+.+.++.||.+.|+|+..+.+.++|++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCCCceEEEEecCCCCceEEEEEEe-----CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-----DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 318 k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS-----~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
+++..++ ...+|..+.|+++++ +++.+. ..+.|.++|++.......- ..+......+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s-------------~ep~~kI~t~~ 147 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSDIDS-------------EEPYLKIPTPD 147 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhhhcc-------------cCceEEecCCc
Confidence 9999998 567899999999987 444443 3467899998743210000 00000112245
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..++.+.|.|-+.+|++|..+|.|.+||++++ ...+.....|...|+.++++++.
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~----------------- 202 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR----------------- 202 (327)
T ss_pred cceeeeeecccCCEEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-----------------
Confidence 77999999999999999999999999999875 23455667889999999999985
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
.+|++++.|.+.++||+.+.. +........+|++.+++|-.
T Consensus 203 ---------T~FiT~s~Dttakl~D~~tl~------------------------------v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 203 ---------TYFITGSKDTTAKLVDVRTLE------------------------------VLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred ---------ceEEecccCccceeeecccee------------------------------eEEEeeecccccceeccccc
Confidence 699999999999999998732 23334456789999999988
Q ss_pred CEEEEEeccceEEE--------------EECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 553 RFVLAAIMDCRICV--------------WNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 553 ~~LaSGs~DG~IrI--------------WDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.+++.|+.....-| |++-..+.+..++||-++|++|+||| +++..++|+.||.|+|.-..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEec
Confidence 88887654322222 22222244667889999999999999 66777899999999997553
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5e-25 Score=244.57 Aligned_cols=295 Identities=18% Similarity=0.283 Sum_probs=248.2
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC--CCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--DCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~--DGtI 309 (1491)
.+++.+.+..-.+.|.+|.|+++|.+|++++.|.+|+|||..+|+.++++..+.-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45666777777889999999999999999999999999999999999999999999999999888777777776 8899
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+..++.+.+.++.|.||...|.+|+.+|-+. .+++++.|++|++||++..++...+..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~------------------- 140 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNL------------------- 140 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEec-------------------
Confidence 9999999999999999999999999999987 899999999999999998877666532
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
..-..+||.|.|-++|++.....|++||++.... ++-..+.+.
T Consensus 141 ---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk-----------------gPF~tf~i~----------------- 183 (311)
T KOG1446|consen 141 ---SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK-----------------GPFTTFSIT----------------- 183 (311)
T ss_pred ---CCCcceeECCCCcEEEEecCCCeEEEEEecccCC-----------------CCceeEccC-----------------
Confidence 2345789999999999998888999999974210 000000000
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
.+.....+.|.||
T Consensus 184 -------------------------------------------------------------------~~~~~ew~~l~FS 196 (311)
T KOG1446|consen 184 -------------------------------------------------------------------DNDEAEWTDLEFS 196 (311)
T ss_pred -------------------------------------------------------------------CCCccceeeeEEc
Confidence 0112345779999
Q ss_pred CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCe---EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-CC
Q 000454 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST---YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-SR 625 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~V---tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~-h~ 625 (1491)
|||++|+.++..+.+++.|.-+|..+.++.++...- -...|+| ++.++++|+.||+|.+|++.+|..+..+.+ +.
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~ 275 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNG 275 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCC
Confidence 999999999999999999999999999998876543 5678999 788999999999999999999999999998 57
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 626 FRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 626 ~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+++.++.|.|.-.++|+++. .+.+|=..
T Consensus 276 ~~~~~~~fnP~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 276 GPVSCVRFNPRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred CCccccccCCceeeeeecCc--eEEEEecc
Confidence 78999999999888877765 67777554
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-26 Score=280.01 Aligned_cols=295 Identities=19% Similarity=0.353 Sum_probs=219.2
Q ss_pred cccceeEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec----------CCCCeEEEEEcC---
Q 000454 230 VQKMQNIKRVR-GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG----------HEGDITDLAVSS--- 295 (1491)
Q Consensus 230 v~t~k~v~tL~-GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g----------H~~~VtsLafSP--- 295 (1491)
+......+.+. +|.++|+|+.||+||+|||+||.||.|+||.+........-.+ ..+.+..+..++
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 34445556677 8999999999999999999999999999999875332111000 001111111111
Q ss_pred --CCCEEEEEECCCeEEEEECC----CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 296 --NNALVASASNDCIIRVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 296 --DG~lLASGS~DGtIrVWDl~----tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
.....-.+.....+. .... ..+++..|.||.+.|..|.|+.++ +|++++.|.+|++|++....|+..+.
T Consensus 333 ~~~~s~~~~~~~s~~~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~----fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNN----FLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred cccccccccccCCcccc-CCCccccccccchhhhhccchhheecccccCC----eeEeccccccEEeecCCCcceeeEEe
Confidence 011122222222222 2221 247788999999999999999986 89999999999999999999888873
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceE
Q 000454 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1491)
Q Consensus 370 ~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1491)
|...|+|++|+| |.++|++|+-||.|+||++..
T Consensus 408 ---------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d------------------------- 441 (712)
T KOG0283|consen 408 ---------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD------------------------- 441 (712)
T ss_pred ---------------------cCCeeEEEEecccCCCcEeecccccceEEeecCc-------------------------
Confidence 888999999999 778999999999999999832
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
..|..|.
T Consensus 442 ------------------------------------------~~Vv~W~------------------------------- 448 (712)
T KOG0283|consen 442 ------------------------------------------KKVVDWN------------------------------- 448 (712)
T ss_pred ------------------------------------------CeeEeeh-------------------------------
Confidence 1233331
Q ss_pred CCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe--CC------CCCeEEEEEecCCCcEEEE
Q 000454 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GH------TESTYVLDVHPFNPRIAMS 600 (1491)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~--gH------s~~VtsLafSPdd~~lLaS 600 (1491)
....-|++++|+|||++.++|+.+|.+++|++...++...+. .| ...|+.+.|.|....-|+.
T Consensus 449 ---------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 449 ---------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred ---------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 011358899999999999999999999999998877665442 11 2279999999966665667
Q ss_pred EeCCCcEEEEeCCCCceEEEEeeCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 601 AGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 601 gS~DGtIrIWDl~tGk~l~~l~~h~~--~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.+.|..|+|+|..+..++..|.+... .-....|+.||++|+++++|..|+||+...-
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 88899999999999999988886543 3346799999999999999999999998543
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2.1e-26 Score=246.53 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=252.8
Q ss_pred EEEccCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 237 KRVRGHRNAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSp---DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
.+..||+.+|..++||| +|-+|++++.||.-.+-+-+||.-+.+|.||.+.|+...++.+-...|+++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 46789999999999986 899999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
.-+|..+..|. |...|.+++|+.|.. +|++|+.+..++|||+...+... ....+|.+
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~App-------------------~E~~ghtg 144 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKAPP-------------------KEISGHTG 144 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccch---hhhccchHHHhhhhhccCCCCCc-------------------hhhcCCCC
Confidence 99999999998 999999999999987 89999999999999997554322 22356899
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
.|..+.|....+.|++...|++||+||.+++. .+..+. ....|+++.++++|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---------~v~sL~-~~s~VtSlEvs~dG------------------ 196 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGT---------EVQSLE-FNSPVTSLEVSQDG------------------ 196 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCc---------EEEEEe-cCCCCcceeeccCC------------------
Confidence 99999999988999999999999999998743 333332 34578899999886
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
.+++.+..+.|.+||..+-.. ......+..|.+..++|+..
T Consensus 197 ---------~ilTia~gssV~Fwdaksf~~------------------------------lKs~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 197 ---------RILTIAYGSSVKFWDAKSFGL------------------------------LKSYKMPCNVESASLHPKKE 237 (334)
T ss_pred ---------CEEEEecCceeEEeccccccc------------------------------eeeccCccccccccccCCCc
Confidence 788888999999999886321 11223345688899999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
++++|+.|+.++.||..+|..+..+ ++|.++|.||.|+| ++.+.++|+.||+|+||.+..++..
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999986 99999999999999 7778889999999999998766543
No 64
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.9e-25 Score=263.07 Aligned_cols=416 Identities=20% Similarity=0.320 Sum_probs=310.1
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEECCCC---------------------------------
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETA--------------------------------- 275 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~---~LATGS~DGtIrIWDl~Tg--------------------------------- 275 (1491)
+...+.++.||.+.|+|+.|-|+.. ++++|+.|+.|++|.+...
T Consensus 43 k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 43 KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGT 122 (764)
T ss_pred cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCce
Confidence 3356788999999999999999887 8889999998888866410
Q ss_pred -----------------------------------------------------------eEEEEEecCCCCeEEEEEcCC
Q 000454 276 -----------------------------------------------------------YCLASCRGHEGDITDLAVSSN 296 (1491)
Q Consensus 276 -----------------------------------------------------------~~l~tL~gH~~~VtsLafSPD 296 (1491)
+.+..+.||.+.|.+|+|...
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 112345689999999999875
Q ss_pred CC---EEEEEECCCeEEEEECCCCC---------------------ce----------eeeccCCCceEEEEecCCCCce
Q 000454 297 NA---LVASASNDCIIRVWRLPDGL---------------------PI----------SVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 297 G~---lLASGS~DGtIrVWDl~tgk---------------------~i----------~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
+. +||++|.|..||||.+.-+. .. ..+.||...|+++.|+|.+.
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~-- 280 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL-- 280 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh--
Confidence 44 89999999999999863221 01 22459999999999999986
Q ss_pred EEEEEEeCCCcEEEEccCCC--CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEe
Q 000454 343 YQLLSSSDDGTCRIWDARYS--QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg--~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWD 420 (1491)
.|++++.|.++.+|..... -.+....+ | ...+.....+.+.|+|+++.|++-+..|..++|.
T Consensus 281 -~LLSASaDksmiiW~pd~~tGiWv~~vRl--------G-------e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 281 -DLLSASADKSMIIWKPDENTGIWVDVVRL--------G-------EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred -hheecccCcceEEEecCCccceEEEEEEe--------e-------cccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 7999999999999976644 22223222 1 1123455688999999999999999999999998
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC
Q 000454 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 421 l~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
.... ........+.||.+.|..|+|.|.| .+|++.+.|.+-|++-.-.
T Consensus 345 t~d~------~~w~~~~~iSGH~~~V~dv~W~psG--------------------------eflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 345 TKDK------TFWTQEPVISGHVDGVKDVDWDPSG--------------------------EFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred ccCc------cceeeccccccccccceeeeecCCC--------------------------CEEEEeccccceeeecccc
Confidence 3221 1234556678999999999999986 6999999999999984331
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC---------
Q 000454 501 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--------- 571 (1491)
Q Consensus 501 ~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t--------- 571 (1491)
.+ ..| ..+.+...|...++|++|-+....+++|.....+++|+...
T Consensus 393 ~q-----~~w--------------------HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 393 RQ-----QEW--------------------HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred cc-----cce--------------------eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHH
Confidence 11 112 23344556788889999888656677787888888887421
Q ss_pred ----------------------------------Cc---------------------------------eEEEEeCCCCC
Q 000454 572 ----------------------------------GS---------------------------------LVHSLTGHTES 584 (1491)
Q Consensus 572 ----------------------------------gk---------------------------------ll~tL~gHs~~ 584 (1491)
|. .++.+.||.-.
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 00 02345689999
Q ss_pred eEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 585 TYVLDVHPFNPRIAMSAGYD-----GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 585 VtsLafSPdd~~lLaSgS~D-----GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
|++++.+| .+.++||++.. ..|++|+..+...+..+..|.-.|+.++|||||++|++.+.|.++.+|....+..
T Consensus 528 v~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 528 VYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred EEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc
Confidence 99999999 78999998754 4699999999999999999999999999999999999999999999999744321
Q ss_pred cccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEE
Q 000454 660 QKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAV 739 (1491)
Q Consensus 660 ~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAv 739 (1491)
... .| .|. ..++..+.++.|+||+.++|+
T Consensus 607 ~e~-----~f--------------------------------a~~--------------k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 607 DEF-----RF--------------------------------ACL--------------KAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred hhh-----hh--------------------------------ccc--------------cccceEEEEcccCcccceeEE
Confidence 110 00 000 014445666999999999999
Q ss_pred eeCCCCCCcEEeccCCCc--ccccc----CCcccccccccccCC
Q 000454 740 GPDFSLDQGYQLQPLADL--DVMID----PLPEFIDVMDWEPEN 777 (1491)
Q Consensus 740 g~d~s~d~~v~lw~~~~~--~~lie----plp~~i~~~~W~P~~ 777 (1491)
+ |.|..+.+|-..+. +++-+ +......++.|.|..
T Consensus 636 a---SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 636 A---SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred e---cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc
Confidence 9 99999999998776 44333 333455566666543
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.6e-25 Score=251.88 Aligned_cols=300 Identities=21% Similarity=0.357 Sum_probs=240.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN---ALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG---~lLASGS~DGtIrVWDl~tgk 318 (1491)
|.+.|.+|... +++|+||+.||+++|||.. |++.+++.||.++|.+++|.--+ ..|++++.|.++++|-++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 89999999888 7899999999999999986 99999999999999998885433 369999999999999988774
Q ss_pred c----eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc--ceeecC---CCCCcccCCCCCCCCCCC
Q 000454 319 P----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS--PRIYIP---RPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 319 ~----i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~--~~i~~~---~~~~~~~g~~~~~~~s~~ 389 (1491)
. +....||...|.+|...+++. .+++|+.|.+|.||+....... ...... .......+....+.....
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 3 344569999999999999998 9999999999999993322110 000000 000011123344556678
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
+|...|.++.|++ ...+++++.|.+|++||+.++. .+..+.+ ...+.++..+|..
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~---------~~~~~~~-~ksl~~i~~~~~~-------------- 312 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG---------LKSTLTT-NKSLNCISYSPLS-------------- 312 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeeccc---------ceeeeec-CcceeEeeccccc--------------
Confidence 8999999999988 6789999999999999998743 2333322 3467788888753
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
.+|++|+.|..|++||++++.. ....+.+.+|...|.++.|+
T Consensus 313 ------------~Ll~~gssdr~irl~DPR~~~g--------------------------s~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 313 ------------KLLASGSSDRHIRLWDPRTGDG--------------------------SVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred ------------ceeeecCCCCceeecCCCCCCC--------------------------ceeEEeeecchhhhhheecC
Confidence 6899999999999999997431 13346678999999999999
Q ss_pred CCCCE-EEEEeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 550 LDNRF-VLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 550 PDG~~-LaSGs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
|...+ |++|+.|+++++||+++.+ ++..+.+|.+.|.++.|.. +.++++||.|.+|+|+.-
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 97765 7789999999999999887 9999999999999999974 678889999999999864
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=258.37 Aligned_cols=301 Identities=21% Similarity=0.311 Sum_probs=233.6
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCR-GHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg----~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
.+-..|.+|+..|.++++.|.|-+|++|+.|.+|++||+... +..+.|. .-...|.++.|++.|..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 344578999999999999999999999999999999999743 2222222 23557999999999998888888889
Q ss_pred EEEEECCCCCce-------------eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 309 IRVWRLPDGLPI-------------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 309 IrVWDl~tgk~i-------------~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
++|+|- .|..+ ..-+||...++|.+|+|+.+ ..|++++.||+++|||+...+....++.+.
T Consensus 238 akl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--- 311 (641)
T KOG0772|consen 238 AKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--- 311 (641)
T ss_pred eeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCchhheeEEeec---
Confidence 999994 44332 22358999999999999976 379999999999999998766444333222
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC--CceEEEEcc
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN--DVNYVQFSG 453 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~--~V~sVafSp 453 (1491)
...+..-.++.|+|++||++||+|+.||.|.+|+..... ....+..-.+|.. .|++|.|++
T Consensus 312 -----------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 312 -----------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred -----------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------cccceEeeeccCCCCceeEEEecc
Confidence 123456678999999999999999999999999985421 1234455567877 999999999
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
+| ++|++-+.|+++++||++..+... ..
T Consensus 375 dg--------------------------~~LlSRg~D~tLKvWDLrq~kkpL--~~------------------------ 402 (641)
T KOG0772|consen 375 DG--------------------------NYLLSRGFDDTLKVWDLRQFKKPL--NV------------------------ 402 (641)
T ss_pred cc--------------------------chhhhccCCCceeeeeccccccch--hh------------------------
Confidence 87 799999999999999999643110 00
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEe------ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAI------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs------~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtI 607 (1491)
..-+.....-+.++|||+.++|++|+ ..|.+++||..+...+..+.-....|..+.|||--..++ .|+.||++
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsgdG~~ 481 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSGDGTA 481 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecCCCce
Confidence 01112334457789999999999975 357899999999999999987788899999999544454 57778998
Q ss_pred EEE
Q 000454 608 IVW 610 (1491)
Q Consensus 608 rIW 610 (1491)
+||
T Consensus 482 ~vy 484 (641)
T KOG0772|consen 482 HVY 484 (641)
T ss_pred EEE
Confidence 876
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2e-25 Score=278.26 Aligned_cols=297 Identities=21% Similarity=0.344 Sum_probs=243.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMET------------AYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS--~DGtIrIWDl~T------------g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
+...|++|..+|||..+|||+ .||.++||+... .+.+.++..|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345699999999999999999 899999998742 245667778999999999999999999999999
Q ss_pred eEEEEECCC------------------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 308 IIRVWRLPD------------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 308 tIrVWDl~t------------------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
.|.||.... .+.+..+.+|...|..++|+|++. +|++++.|++|.||+..+.+.+.++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~---~lvS~s~DnsViiwn~~tF~~~~vl- 167 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS---LLVSVSLDNSVIIWNAKTFELLKVL- 167 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc---EEEEecccceEEEEccccceeeeee-
Confidence 999998762 135678899999999999999987 9999999999999999988766665
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEE
Q 000454 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1491)
Q Consensus 370 ~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV 449 (1491)
.+|...|..+.|.|-|++||+-+.|++|+||++.+ +.....+..+...
T Consensus 168 -------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d---------w~i~k~It~pf~~---- 215 (942)
T KOG0973|consen 168 -------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD---------WGIEKSITKPFEE---- 215 (942)
T ss_pred -------------------ecccccccceEECCccCeeeeecCCceEEEEEccc---------ceeeEeeccchhh----
Confidence 45899999999999999999999999999999743 1111111111100
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
T Consensus 216 -------------------------------------------------------------------------------- 215 (942)
T KOG0973|consen 216 -------------------------------------------------------------------------------- 215 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEe----ccceEEEEECCCCceEEEEeCCCCCeEEEEEecC------C-----
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAI----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPF------N----- 594 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPd------d----- 594 (1491)
.+....+..+.|||||.+|++.. .-.++.|.+-.+.+.-..|-||.+++.++.|+|. .
T Consensus 216 -------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 216 -------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred -------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 00112356688999999999853 2336899999888988999999999999999982 1
Q ss_pred -C----cEEEEEeCCCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 595 -P----RIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 595 -~----~lLaSgS~DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
+ .++|+|+.|++|-||.....+++.... .....|.+++|+|||..|++++.||.|.++.+...+.-.
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 1 178999999999999998888776554 235589999999999999999999999999998776533
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-25 Score=243.36 Aligned_cols=295 Identities=15% Similarity=0.231 Sum_probs=245.7
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEcc
Q 000454 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1491)
Q Consensus 280 tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl 359 (1491)
.+.||..+++.|.|+.+|.+|++++.|.++.||--.+|+.+.++.||++.|+|+...-+.+ .|++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~---~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK---HLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc---eeeeccccceeEEEEc
Confidence 3678999999999999999999999999999999889999999999999999999999887 9999999999999999
Q ss_pred CCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-----CceEEEEeCCCCCCCCCCCCCc
Q 000454 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 360 ~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-----DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
.+|+++..+. ....|..+.|+++|++++.... .+.|.++|++..... .....
T Consensus 82 ~tGk~la~~k---------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~--~~s~e 138 (327)
T KOG0643|consen 82 ETGKQLATWK---------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD--IDSEE 138 (327)
T ss_pred CCCcEEEEee---------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh--hcccC
Confidence 9999888874 3567999999999998887654 468999999753321 11234
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
++..+..+...++.+.|.|.+ +.|++|..||.|.+||+++++..
T Consensus 139 p~~kI~t~~skit~a~Wg~l~--------------------------~~ii~Ghe~G~is~~da~~g~~~---------- 182 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLG--------------------------ETIIAGHEDGSISIYDARTGKEL---------- 182 (327)
T ss_pred ceEEecCCccceeeeeecccC--------------------------CEEEEecCCCcEEEEEcccCcee----------
Confidence 467777888999999999875 79999999999999999975421
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd 594 (1491)
+.....|...|+.+++++|..++++++.|.+-++||+.+-++++++. -..+|++.+++|..
T Consensus 183 ------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 183 ------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLL 243 (327)
T ss_pred ------------------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceeccccc
Confidence 22234577789999999999999999999999999999999999987 35689999999966
Q ss_pred CcEEEEEeCCCc-------------EEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 595 PRIAMSAGYDGK-------------TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 595 ~~lLaSgS~DGt-------------IrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
..+++-||.+.. .++|++-..+.+..+++|-++|.+++|+|||+..++|+.||.|+|.-+.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 666655554321 1233333345667788999999999999999999999999999998653
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=4.8e-26 Score=258.17 Aligned_cols=289 Identities=22% Similarity=0.318 Sum_probs=240.8
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
....+..|.+.|..+.|-++...|+||+.|..|++|++...+ .+.+|.|..+.|+++.|.+++..+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345788899999999999999999999999999999997666 677888999999999999999999999999999999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
++...+...+|.+|+..|+++.|..... .+++|+.|.+|++||+....|...+.. .
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~---------------------~ 302 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLP---------------------G 302 (459)
T ss_pred eccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccc---------------------c
Confidence 9999999999999999999999998765 699999999999999998887766532 2
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..+..|+.+ +..+++|-.|+.|++||+++. ........+. .|+++..++++
T Consensus 303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG----------------- 353 (459)
T ss_pred ccccceEec--ceeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-----------------
Confidence 334555554 567889999999999999763 3455555554 89999999886
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
..|++++.|.++.+.|+++....... . .. -.......+.++|||++
T Consensus 354 ---------~~lLsssRDdtl~viDlRt~eI~~~~-------s----------------A~--g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 354 ---------LELLSSSRDDTLKVIDLRTKEIRQTF-------S----------------AE--GFKCASDWTRVVFSPDG 399 (459)
T ss_pred ---------eEEeeecCCCceeeeecccccEEEEe-------e----------------cc--ccccccccceeEECCCC
Confidence 57888899999999999974321100 0 00 01122337889999999
Q ss_pred CEEEEEeccceEEEEECCCCceEEEEeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~--~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
.|+++|+.||.|+||++.++++...+..... .|++++|+| .+..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 9999999999999999999999998876555 499999999 667777999999999993
No 70
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=4.3e-24 Score=254.31 Aligned_cols=374 Identities=17% Similarity=0.251 Sum_probs=282.2
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCe---------------------EEE-------
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETAY---------------------CLA------- 279 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~---~LATGS~DGtIrIWDl~Tg~---------------------~l~------- 279 (1491)
.+++.+..|.||.+.|..|+|...+. +||++|.|..|+||.+.-+. .+.
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 47889999999999999999998665 89999999999999874221 111
Q ss_pred ---EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc-------eeeeccCCCceEEEEecCCCCceEEEEEEe
Q 000454 280 ---SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP-------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1491)
Q Consensus 280 ---tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~-------i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS 349 (1491)
.+.||.+.|.++.|+|.+..|++++.|.++.||...+..- +..+.+..+..++..|+|++. .+++-+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g 335 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHG 335 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEec
Confidence 2349999999999999999999999999999998654421 222334556789999999987 899999
Q ss_pred CCCcEEEEccCC-CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCC
Q 000454 350 DDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1491)
Q Consensus 350 ~DGtVrIWDl~t-g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~ 428 (1491)
..|..++|.... ....+ .....+|...|..++|.|.|.+|++.+.|.+-|||-.-.
T Consensus 336 ~~Gg~hlWkt~d~~~w~~------------------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg----- 392 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQ------------------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG----- 392 (764)
T ss_pred ccCcEEEEeccCccceee------------------ccccccccccceeeeecCCCCEEEEeccccceeeecccc-----
Confidence 999999998221 11111 223467899999999999999999999999999987641
Q ss_pred CCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC------
Q 000454 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR------ 502 (1491)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k------ 502 (1491)
..+...++..-.-|...++|+++-+. .-.|++|.....+|+|+....-
T Consensus 393 ~q~~wHEiaRPQiHGyDl~c~~~vn~--------------------------~~~FVSgAdEKVlRvF~aPk~fv~~l~~ 446 (764)
T KOG1063|consen 393 RQQEWHEIARPQIHGYDLTCLSFVNE--------------------------DLQFVSGADEKVLRVFEAPKSFVKSLMA 446 (764)
T ss_pred cccceeeecccccccccceeeehccC--------------------------CceeeecccceeeeeecCcHHHHHHHHH
Confidence 12236677777889999999999863 1378888888888888654210
Q ss_pred -----CCcc----ccccccccccC--------------------CC----CCCCCCCC--------CCCCCceeccCCCC
Q 000454 503 -----SHPK----AARWTQAYHLK--------------------VP----PPPMPPQP--------PRGGPRQRILPTPR 541 (1491)
Q Consensus 503 -----~~~~----~~~~~~~~~l~--------------------~~----~~~~~~~~--------~~~~~~~~l~~h~~ 541 (1491)
.... .......+.+. .+ +..+...+ ..-....++.+|..
T Consensus 447 i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy 526 (764)
T KOG1063|consen 447 ICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY 526 (764)
T ss_pred HhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCce
Confidence 0000 00000000000 00 00000000 01123456789999
Q ss_pred CeeEEEEcCCCCEEEEEecc-----ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 542 GVNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~D-----G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
.|.+++.+|+|+++|+++.. ..|++|+..+...++.+.+|.-.|+.|+|+| ++++|++++.|.++.+|......
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeeccc
Confidence 99999999999999998854 3599999999999999999999999999999 78899999999999999885432
Q ss_pred ----eEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 617 ----PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 617 ----~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.....+.|..-|+++.|+||+.++|+++.|..|.||....+
T Consensus 606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 23345667778999999999999999999999999999877
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=233.36 Aligned_cols=285 Identities=19% Similarity=0.284 Sum_probs=241.2
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEE
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSS-NNALVASASNDCIIRVWR 313 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t--L~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWD 313 (1491)
+.+++|...|.+|+|+.+|..||+|+.|+++.||++...+.+.. .++|.+.|-.++|+| ...+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 67889999999999999999999999999999999988765554 468999999999998 556999999999999999
Q ss_pred CCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
+..++++..+....+.| -+.|+|++. ++++++.|..|.+.|.++.+...... ...
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~~---------------------~~~ 148 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEEQ---------------------FKF 148 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCC---EEEEecCcccEEEEEecccceeehhc---------------------ccc
Confidence 99999999887554444 588999998 99999999999999998876554432 345
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
.+.-++|+-++.+|+.....|.|.|..... .+++..+.+|...+.||.|+|+|
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---------Lkpv~si~AH~snCicI~f~p~G------------------ 201 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPS---------LKPVQSIKAHPSNCICIEFDPDG------------------ 201 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccc---------cccccccccCCcceEEEEECCCC------------------
Confidence 577889988888888777789999988743 56788899999999999999997
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
.+|++|+.|..+.+||+... -+...+..+.-+|..+.||.||+
T Consensus 202 --------ryfA~GsADAlvSLWD~~EL-----------------------------iC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 202 --------RYFATGSADALVSLWDVDEL-----------------------------ICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred --------ceEeeccccceeeccChhHh-----------------------------hhheeeccccCceEEEEeccCcc
Confidence 79999999999999998841 22344555678899999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeC
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD---------GKTIVWDI 612 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D---------GtIrIWDl 612 (1491)
+||+|+.|..|-|=++.+|..+..+. +.++.+.|+||| ...+||-++.| |.|+||-+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecC
Confidence 99999999999999999999999987 788899999999 56666666543 56666654
No 72
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=259.40 Aligned_cols=384 Identities=18% Similarity=0.240 Sum_probs=292.4
Q ss_pred CccccccCCCcceeee---ccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEE
Q 000454 205 GGFTRHHRAPSIRAAC---YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRY-VITGSDDRLVKIWSMETAYCLAS 280 (1491)
Q Consensus 205 g~~~~~~~~~sl~s~~---~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~-LATGS~DGtIrIWDl~Tg~~l~t 280 (1491)
..++....+|-+..++ -+..+..-.+...+.+.+++.-.+.|+.++|.-||.. +|+|+..|.+.+||++..+.+..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 4455555555544333 2333344556667888888855699999999999985 46777779999999998888887
Q ss_pred Ee-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 281 CR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 281 L~-gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg----k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
++ .|.+.|..+.|.|....|++++.|..+++|=..++ +.++.-.||..+..+|.|.-... +.+++++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g--~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG--HFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc--EEEEecccCcchh
Confidence 76 79999999999999999999999999999855543 45666679999999999985432 4899999999999
Q ss_pred EEccCCCCccceeec---CC---------------CCC-ccc--------------------------------CCCCCC
Q 000454 356 IWDARYSQFSPRIYI---PR---------------PSD-AVA--------------------------------GRNMAP 384 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~---~~---------------~~~-~~~--------------------------------g~~~~~ 384 (1491)
.+++......+.+.. .. +.. ... |.....
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~ 440 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD 440 (910)
T ss_pred hhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec
Confidence 887643221111100 00 000 000 000001
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
..........+++++.++.|++.+.|+..|.|-+|++.++-. ......-..|.+.|++++....
T Consensus 441 ~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------r~sf~~~~ah~~~V~gla~D~~---------- 504 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------RKSFGDSPAHKGEVTGLAVDGT---------- 504 (910)
T ss_pred CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------ecccccCccccCceeEEEecCC----------
Confidence 111122346789999999999999999999999999976421 1112223689999999998754
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
+..+++++.+|-+.+||+..... .....-...++
T Consensus 505 ----------------n~~~vsa~~~Gilkfw~f~~k~l------------------------------~~~l~l~~~~~ 538 (910)
T KOG1539|consen 505 ----------------NRLLVSAGADGILKFWDFKKKVL------------------------------KKSLRLGSSIT 538 (910)
T ss_pred ----------------CceEEEccCcceEEEEecCCcce------------------------------eeeeccCCCcc
Confidence 36899999999999999986321 11122344677
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
++.++.....++++..|-.|+++|+.+.+.++.|.||.+.|++++||| ++++|++++.|++|++||+.++.++..+. -
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-v 616 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-V 616 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-c
Confidence 888888889999999999999999999999999999999999999999 78899999999999999999999999887 4
Q ss_pred CcceEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 000454 625 RFRLVDGKFSPDGASIILSDDV-GQLYILNT 654 (1491)
Q Consensus 625 ~~~VtslafSPDG~~LAsgs~D-G~I~IWdl 654 (1491)
..+++.+.|||+|.+||++..| ..|++|.-
T Consensus 617 d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 5688999999999999999777 68999974
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=231.54 Aligned_cols=287 Identities=20% Similarity=0.243 Sum_probs=241.2
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee--eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~--~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+.+++|...|.+|+|+.+|..||+|+.|+++.||++...+... ...+|.+.|-.++|+|... ..|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~--d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP--DLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC--cceEEecCCceEEE
Confidence 4567899999999999999999999999999999998775544 3468999999999999765 38999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
||++.+++...+.. ...=.-++|+|+|.++++++.|..|.+.|.++.+..
T Consensus 92 wd~r~~k~~~~i~~---------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~--------- 141 (313)
T KOG1407|consen 92 WDIRSGKCTARIET---------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV--------- 141 (313)
T ss_pred EEeccCcEEEEeec---------------------cCcceEEEEcCCCCEEEEecCcccEEEEEeccccee---------
Confidence 99999998887742 223356889999999999999999999999864321
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
.-....-.+..+.|... +++|+.....|+|.|.....
T Consensus 142 -~~~~~~~e~ne~~w~~~--------------------------nd~Fflt~GlG~v~ILsyps---------------- 178 (313)
T KOG1407|consen 142 -NEEQFKFEVNEISWNNS--------------------------NDLFFLTNGLGCVEILSYPS---------------- 178 (313)
T ss_pred -ehhcccceeeeeeecCC--------------------------CCEEEEecCCceEEEEeccc----------------
Confidence 11222334566677633 46778778889999875443
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
..++..+..|+....||.|+|+|++||+|+.|..+-+||+..--+++.+.-+.-+|..|.|+- +++
T Consensus 179 -------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~ 244 (313)
T KOG1407|consen 179 -------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR 244 (313)
T ss_pred -------------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence 245677788999999999999999999999999999999999999999999999999999998 889
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV---------GQLYILNTG 655 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~D---------G~I~IWdl~ 655 (1491)
+||+|+.|..|-|=++.+|..+..++ +.++...++|+|...+||.+++| |.|+||.+.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999999999999998 67889999999999999977543 677777654
No 74
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-22 Score=242.47 Aligned_cols=437 Identities=16% Similarity=0.138 Sum_probs=305.2
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~-~l~tL~gH-~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
+.+.--...|+|+||+.+.+.||.+-.+|.|-||++..+- +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 3444456899999999999999999999999999998653 44556655 5689999999 4557888889999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+++++..+....+.|++++.+|.+. .++.|+.||.+.++++..+.......+ ....+.
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~---~l~IgcddGvl~~~s~~p~~I~~~r~l------------------~rq~sR 156 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENT---ILAIGCDDGVLYDFSIGPDKITYKRSL------------------MRQKSR 156 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccc---eEEeecCCceEEEEecCCceEEEEeec------------------ccccce
Confidence 99999999999999999999999987 899999999888888877765444322 224678
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec-CCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|.+++|+|++..|++|+.||.|++||+.++.... .... .+..+. +...-|++|.|-.+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~-~~d~l~k~~~~iVWSv~~Lrd------------------- 215 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITM-QLDRLSKREPTIVWSVLFLRD------------------- 215 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eeee-cccccccCCceEEEEEEEeec-------------------
Confidence 9999999999999999999999999997653211 0000 011111 12334666666644
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
..|++|..-|+|.+||...+. ..+....|...|.+++..+++.
T Consensus 216 --------~tI~sgDS~G~V~FWd~~~gT-----------------------------LiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 216 --------STIASGDSAGTVTFWDSIFGT-----------------------------LIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred --------CcEEEecCCceEEEEcccCcc-----------------------------hhhhhhhhhcceeEEEEcCCCC
Confidence 489999999999999988633 3444567888999999999999
Q ss_pred EEEEEeccceEEEEECCCCce----EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC----------------
Q 000454 554 FVLAAIMDCRICVWNAADGSL----VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW---------------- 613 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkl----l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~---------------- 613 (1491)
+|++++.|+.|..|...+... ......|...|.+++..+ ..+++||.|..+.+-...
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhcccccccc
Confidence 999999999999998766533 123356888888888876 277777777665543221
Q ss_pred --------------------------CC---------ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 614 --------------------------EG---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 614 --------------------------tG---------k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
+. .+++.+......|.+.+.||||++||.+.- ..++||.+....
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP 414 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCc
Confidence 11 011112223446888999999999998875 456777765432
Q ss_pred cccc-----------ccceeeecCCCcceEEcc-CCCEEE---ccccccCccccCCCccccccCCCCCCcchhhhhhccc
Q 000454 659 SQKD-----------AKYDQFFLGDYRPLVQDT-YGNVLD---QETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRL 723 (1491)
Q Consensus 659 ~~~~-----------~~~~~~fs~D~r~La~d~-~G~vLd---e~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~ 723 (1491)
.++. -.....|.-|...++..+ +..-|. .++..--++-.+++. .--.
T Consensus 415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~------------------~~~~ 476 (691)
T KOG2048|consen 415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ------------------AKCP 476 (691)
T ss_pred ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc------------------cCCC
Confidence 2111 113335555665554444 211111 122221222221111 1122
Q ss_pred ccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCccc--cccCCcccccccccccCCc
Q 000454 724 GALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDV--MIDPLPEFIDVMDWEPENE 778 (1491)
Q Consensus 724 ~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~--lieplp~~i~~~~W~P~~e 778 (1491)
.+..++-||||.|||+. +..+.|.+|++.+.++ +..-++..++.+...|+.-
T Consensus 477 ~I~~l~~SsdG~yiaa~---~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~ 530 (691)
T KOG2048|consen 477 SISRLVVSSDGNYIAAI---STRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVR 530 (691)
T ss_pred cceeEEEcCCCCEEEEE---eccceEEEEEcccceeecchhccCcceeeeecccccc
Confidence 35568999999999999 7889999999987752 2223445666677776554
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.7e-25 Score=240.96 Aligned_cols=296 Identities=24% Similarity=0.429 Sum_probs=252.3
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrV 311 (1491)
.+++++.|.||.+.|+.|+.......+.+++.|.+.+||.+++|.|+.++.||.+.|.+|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 46778899999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----CceeeeccCCCceEEEEecCCCCceEEEEEEeCC
Q 000454 312 WRL------PD------------------------------G----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1491)
Q Consensus 312 WDl------~t------------------------------g----k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D 351 (1491)
|.. .. + .++..|.+|.+.|.+..|...+. .+++++.|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeecc
Confidence 962 11 0 23556789999999999999887 89999999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
.+..+||++++..+..+ .+|....+.++-+|..+++++.+.|.+.++||++.
T Consensus 294 RTAnlwDVEtge~v~~L--------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL--------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred ccceeeeeccCceeccc--------------------cCcchhccccccCCcceEEEEeccCceeEeccchh--------
Confidence 99999999999876655 56888999999999999999999999999999973
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
....+..+.||...|+++.|.-+ +.+++|+.|.+|++||+++.+.
T Consensus 346 aI~sV~VFQGHtdtVTS~vF~~d---------------------------d~vVSgSDDrTvKvWdLrNMRs-------- 390 (481)
T KOG0300|consen 346 AIQSVAVFQGHTDTVTSVVFNTD---------------------------DRVVSGSDDRTVKVWDLRNMRS-------- 390 (481)
T ss_pred hcceeeeecccccceeEEEEecC---------------------------CceeecCCCceEEEeeeccccC--------
Confidence 25578889999999999999865 5899999999999999997431
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE-----EeCCCCCeE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-----LTGHTESTY 586 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t-----L~gHs~~Vt 586 (1491)
++. .+....+++.++.+..+..|+.--.+..|++||+... .+.. -.+|...|+
T Consensus 391 --------------------plA-TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~ 448 (481)
T KOG0300|consen 391 --------------------PLA-TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVT 448 (481)
T ss_pred --------------------cce-eeecCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeee
Confidence 111 1234567888999999889999888999999999643 3333 358999999
Q ss_pred EEEEecCCC-cEEEEEeCCCcEEEEeCCCC
Q 000454 587 VLDVHPFNP-RIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 587 sLafSPdd~-~lLaSgS~DGtIrIWDl~tG 615 (1491)
|++|....+ .-|++||.|..+.-|.+...
T Consensus 449 c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 449 CCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeccccCcccccccccccceeeeeEeccc
Confidence 999975322 34669999999999998653
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.2e-24 Score=247.85 Aligned_cols=297 Identities=19% Similarity=0.311 Sum_probs=242.5
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----E-------------E-ecCCCCeEEEEEcCCC
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA----S-------------C-RGHEGDITDLAVSSNN 297 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~----t-------------L-~gH~~~VtsLafSPDG 297 (1491)
++.+..|.-+|+||+++|+++++++++.+|+|.=|++.+|+... . - ++|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56788899999999999999999999999999999998886431 1 1 2788999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.... .|++++.|+.|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~---~lys~s~Drsvkvw~~~~~s~vetl--------- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS---ELYSASADRSVKVWSIDQLSYVETL--------- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc---ceeeeecCCceEEEehhHhHHHHHH---------
Confidence 9999999999999999999999999999999999999988765 8999999999999999877766665
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccc
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1491)
.+|...|..+....-++.+.+|+.|.++++|++. ......+.+|.+.+.|++|-.+
T Consensus 283 -----------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~----------eesqlifrg~~~sidcv~~In~--- 338 (479)
T KOG0299|consen 283 -----------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP----------EESQLIFRGGEGSIDCVAFIND--- 338 (479)
T ss_pred -----------hCCccceeeechhcccceEEeccccceeEEEecc----------ccceeeeeCCCCCeeeEEEecc---
Confidence 4588999999999899999999999999999994 2344567888999999999865
Q ss_pred cccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|++||.+|.|.+|++...+.... ......+ .+.....
T Consensus 339 ------------------------~HfvsGSdnG~IaLWs~~KKkplf~-----~~~AHgv------------~~~~~~~ 377 (479)
T KOG0299|consen 339 ------------------------EHFVSGSDNGSIALWSLLKKKPLFT-----SRLAHGV------------IPELDPV 377 (479)
T ss_pred ------------------------cceeeccCCceEEEeeecccCceeE-----eeccccc------------cCCcccc
Confidence 5899999999999999886543211 1100000 0111122
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC----ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg----kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
.++..|++++..|...++|+|+.+|.|++|-+..+ .++..+. -.+.|++|+|++++.++++..|....+-=|
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 33468999999999999999999999999999887 4455554 567899999999666677766666555444
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=234.35 Aligned_cols=282 Identities=23% Similarity=0.379 Sum_probs=232.5
Q ss_pred EEEEEcC--CCCEE-EEE-----eCCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC
Q 000454 247 YCAIFDR--SGRYV-ITG-----SDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 247 t~VaFSp--DG~~L-ATG-----S~DGtIrIWDl~Tg~~l~tL~--gH~~~VtsLafSPD-G~lLASGS~DGtIrVWDl~ 315 (1491)
+++.||| .+++. |++ ...|.+.|-++..+.-+..+. .-...+.+++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 7899999 34332 222 246899999997555454443 24678999999995 4578888999999999964
Q ss_pred C-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 316 D-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 316 t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
. ..+++.++.|...|.++.|.+..+ ..+++++.||+|++|+..-++.+.++ .+|...
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r--~~~ltsSWD~TiKLW~~~r~~Sv~Tf--------------------~gh~~~ 149 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRR--RIFLTSSWDGTIKLWDPNRPNSVQTF--------------------NGHNSC 149 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccc--eeEEeeccCCceEeecCCCCcceEee--------------------cCCccE
Confidence 3 368999999999999999999865 47888899999999998877766654 458889
Q ss_pred eEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|...+|+| .+++|++++.|+++++||++.+ ++.+. +..|...|.++.|+.-
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky------------------- 201 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKY------------------- 201 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeeccccc-------------------
Confidence 99999999 5789999999999999999752 33444 8899999999999864
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN- 552 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG- 552 (1491)
++..++||+.|+.|++||++.-+ .++..+.+|...|..+.|||..
T Consensus 202 ------~~~vl~Tg~vd~~vr~wDir~~r----------------------------~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 202 ------NHNVLATGGVDNLVRGWDIRNLR----------------------------TPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred ------CCcEEEecCCCceEEEEehhhcc----------------------------ccceeecCCceEEEEEecCcchh
Confidence 25789999999999999999633 3466778899999999999975
Q ss_pred CEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 553 RFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..||+++.|.+++|||...+ .++.+...|+.-|..+.|++..+.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 47889999999999999744 4566778899999999999999999999999999999984
No 78
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=3.4e-23 Score=256.08 Aligned_cols=266 Identities=21% Similarity=0.282 Sum_probs=204.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-------------EEEecCCCCeEEEEEcC-CCCEEEEEECCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL-------------ASCRGHEGDITDLAVSS-NNALVASASNDC 307 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l-------------~tL~gH~~~VtsLafSP-DG~lLASGS~DG 307 (1491)
|-..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++.+||+|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666777778777777777777778876544332 14678999999999999 889999999999
Q ss_pred eEEEEECCCC-------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 308 IIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 308 tIrVWDl~tg-------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+|+|||+.++ .++..+.+|...|.+++|+|++. .+|++++.|++|+|||+.++.....+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSgs~DgtVrIWDl~tg~~~~~l------------ 164 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASAGADMVVNVWDVERGKAVEVI------------ 164 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEEeCCCEEEEEECCCCeEEEEE------------
Confidence 9999999765 35678899999999999999853 28999999999999999987655443
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCc-eEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-NYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V-~sVafSpdg~as~ 459 (1491)
..|...|.+++|+|+|.+|++++.|+.|+|||+++ ...+..+.+|.+.+ ..+.|.+++
T Consensus 165 --------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs---------g~~v~tl~~H~~~~~~~~~w~~~~---- 223 (493)
T PTZ00421 165 --------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD---------GTIVSSVEAHASAKSQRCLWAKRK---- 223 (493)
T ss_pred --------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC---------CcEEEEEecCCCCcceEEEEcCCC----
Confidence 23677899999999999999999999999999976 34566677887643 456777653
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEe----CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS----~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
..+++++ .|+.|++||++.... +...
T Consensus 224 ----------------------~~ivt~G~s~s~Dr~VklWDlr~~~~----------------------------p~~~ 253 (493)
T PTZ00421 224 ----------------------DLIITLGCSKSQQRQIMLWDTRKMAS----------------------------PYST 253 (493)
T ss_pred ----------------------CeEEEEecCCCCCCeEEEEeCCCCCC----------------------------ceeE
Confidence 3555543 589999999985321 1111
Q ss_pred c-cCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECCCCceEEEEeC-CCCCeEEEEEec
Q 000454 536 I-LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTG-HTESTYVLDVHP 592 (1491)
Q Consensus 536 l-~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~tgkll~tL~g-Hs~~VtsLafSP 592 (1491)
. ......+....|++++.+|++|+ .|+.|++||+.+++++..+.. +..++..++|.|
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 1 11233466678999999999887 599999999999988776643 445677888887
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=264.28 Aligned_cols=281 Identities=25% Similarity=0.409 Sum_probs=247.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee-eccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV-LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~-L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
+...|.+..|. ..++++++.+++|++|+..++..+.. +.+|.+.|++++|..-+. +|++|+.|.++++||+.++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~---~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD---KLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC---EEEEEecCCcEEeEecCCC
Confidence 56778888888 56899999999999999999999888 999999999999987444 8999999999999999999
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
++...+ .+|...|.++... ...+++|+.|.+|++|++.+ ...+..+.+|
T Consensus 282 ~C~~~l--------------------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n---------~~~l~l~~~h 330 (537)
T KOG0274|consen 282 ECTHSL--------------------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN---------GACLNLLRGH 330 (537)
T ss_pred cEEEEe--------------------cCCCceEEEEEcc--CceEeeccCCceEEEEeccC---------cceEEEeccc
Confidence 998887 3478888888775 45788899999999999975 5678888889
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
...|.++.... +++++|+.||+|++||+.+.
T Consensus 331 ~~~V~~v~~~~----------------------------~~lvsgs~d~~v~VW~~~~~--------------------- 361 (537)
T KOG0274|consen 331 TGPVNCVQLDE----------------------------PLLVSGSYDGTVKVWDPRTG--------------------- 361 (537)
T ss_pred cccEEEEEecC----------------------------CEEEEEecCceEEEEEhhhc---------------------
Confidence 99999999983 58999999999999999863
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
..+..+.+|...|.++.+... ..+++|+.|+.|++||+.++ +++.++.+|...|..+.+ ...+|+++
T Consensus 362 --------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~ 429 (537)
T KOG0274|consen 362 --------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSS 429 (537)
T ss_pred --------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEec
Confidence 356677889999999988765 89999999999999999999 999999999999988877 34788899
Q ss_pred eCCCcEEEEeCCCCceEEEEee-CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccc
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~-h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~ 663 (1491)
+.|++|++||..+++++..+.+ +.+.|+.+++. ...+++++.+|.+.+||+.+++.....
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999999999998 56889988887 567889999999999999999876654
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-23 Score=253.04 Aligned_cols=278 Identities=19% Similarity=0.340 Sum_probs=237.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeecc-
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 325 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~g- 325 (1491)
.-+.|+ ....||.|. ...|.+|+..++........+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 346677 445677764 45799999999987777776689999999999999999999999999999999999999998
Q ss_pred CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 326 Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
|...|-+++|... .+.+|+.+|.|.++|++..+..... ...|...|..+.|++|+.
T Consensus 259 h~~rvg~laW~~~-----~lssGsr~~~I~~~dvR~~~~~~~~-------------------~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 259 HASRVGSLAWNSS-----VLSSGSRDGKILNHDVRISQHVVST-------------------LQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred cCceeEEEeccCc-----eEEEecCCCcEEEEEEecchhhhhh-------------------hhcccceeeeeEECCCCC
Confidence 9999999999943 7999999999999999876644331 356899999999999999
Q ss_pred EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEE
Q 000454 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~La 485 (1491)
+||+|+.|+.+.|||... ...+..+..|...|.+++|+|-. ...||
T Consensus 315 ~lASGgnDN~~~Iwd~~~---------~~p~~~~~~H~aAVKA~awcP~q-------------------------~~lLA 360 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS---------PEPKFTFTEHTAAVKALAWCPWQ-------------------------SGLLA 360 (484)
T ss_pred eeccCCCccceEeccCCC---------ccccEEEeccceeeeEeeeCCCc-------------------------cCceE
Confidence 999999999999999943 45677889999999999999864 45788
Q ss_pred EE--eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE--Eecc
Q 000454 486 TC--SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMD 561 (1491)
Q Consensus 486 Sg--S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS--Gs~D 561 (1491)
+| +.|++|++||..++. ..........|..|.|++..+-|++ |..+
T Consensus 361 sGGGs~D~~i~fwn~~~g~------------------------------~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNTGA------------------------------RIDSVDTGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred EcCCCcccEEEEEEcCCCc------------------------------EecccccCCceeeEEEcCCCCEEEEecCCCC
Confidence 86 569999999998744 2223445678999999999977776 4567
Q ss_pred ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
+.|.||+..+.+.+..+.+|...|..++++| ++..+++|+.|.++++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 7899999999999999999999999999999 6788889999999999999764
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=257.46 Aligned_cols=340 Identities=20% Similarity=0.309 Sum_probs=266.3
Q ss_pred CCCCEE---EEEEcC-CCCEEEEEeCCCeEEEEECCCC------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 000454 242 HRNAVY---CAIFDR-SGRYVITGSDDRLVKIWSMETA------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 242 H~~~Vt---~VaFSp-DG~~LATGS~DGtIrIWDl~Tg------~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrV 311 (1491)
|...|. ++..+. .++||+|||.||.|++|++..- ..+.++..|..+|.+++...+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 445555 444444 5678999999999999998542 246778899999999999999999999999999999
Q ss_pred EECCCC--CceeeeccCCCceEEEEe-cCCCCceEEEEEEeCCCcEEEEccCCCCc--cceeecCCCCCcccCCCCCCCC
Q 000454 312 WRLPDG--LPISVLRGHTAAVTAIAF-SPRPGSVYQLLSSSDDGTCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 312 WDl~tg--k~i~~L~gHs~~VtsLaF-SPdg~s~~~LaSgS~DGtVrIWDl~tg~~--~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|+...+ -++.++..|...|.|+++ .++.. ++++||-|+.|.+||+.++.. +..+. ......
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~s~n-----------~~t~~s 165 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVASFN-----------NVTVNS 165 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcchhhhhhcc-----------cccccc
Confidence 999877 688899999999999999 66654 899999999999999998732 22221 111111
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1491)
...++...|++++.++.|..|++|+..+.|++||.++ ...+..+.||+..|..+..+.+|
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt---------~~kimkLrGHTdNVr~ll~~dDG----------- 225 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT---------CKKIMKLRGHTDNVRVLLVNDDG----------- 225 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEecccc---------ccceeeeeccccceEEEEEcCCC-----------
Confidence 1226788999999999999999999999999999987 55677888999999999999987
Q ss_pred CCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEE
Q 000454 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1491)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 546 (1491)
..++++|.||+|++||+...+ ++..+..|...|+++
T Consensus 226 ---------------t~~ls~sSDgtIrlWdLgqQr-----------------------------Cl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 226 ---------------TRLLSASSDGTIRLWDLGQQR-----------------------------CLATYIVHKEGVWAL 261 (735)
T ss_pred ---------------CeEeecCCCceEEeeeccccc-----------------------------eeeeEEeccCceEEE
Confidence 699999999999999998633 344567788889999
Q ss_pred EEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceEE
Q 000454 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------GIPIR 619 (1491)
Q Consensus 547 afSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-------Gk~l~ 619 (1491)
..+|+-.++++|+.||.|+.=|+.+......+.....+|..+..+-.+..+ -++..|+.|+-|...- +.+..
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDIALSVSGDLDF 340 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCccccccccCCCCCc
Confidence 999999999999999999999999864444444455667777776534443 4577899999996532 11111
Q ss_pred ------------------EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 620 ------------------IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 620 ------------------~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
.+. +..+|...++-.|.+++++-+..|.+.+||+-.+..+.
T Consensus 341 ~~T~~~~~~~~~~~tp~~vi~-Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~ 399 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTNTPDSVIP-GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVE 399 (735)
T ss_pred ccccCCCccccccCCCceecc-CchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehh
Confidence 111 12244455666788999999999999999997765544
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=237.27 Aligned_cols=285 Identities=19% Similarity=0.292 Sum_probs=243.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee--------ccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL--------RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L--------~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
+....+.|..|+|||+||++|+.||.|.||+..+|+....+ .-+..+|.|+.|+.|.. .|++|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcE
Confidence 55677899999999999999999999999999999765443 34678999999999987 89999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
++|.+.+|.|+.++. ..|...|+|+.|+.|+..+++++.|.+++|.-+.+ ++
T Consensus 288 KvWri~tG~ClRrFd-------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---------GK 339 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD-------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---------GK 339 (508)
T ss_pred EEEEEecchHHHHhh-------------------hhhccCeeEEEEccCcchhhcccccceEEEecccc---------ch
Confidence 999999999998873 35888999999999999999999999999998876 56
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.+..+.+|...|+...|.++| ..+++++.||+|++|+..+..+...
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG--------------------------~~iisaSsDgtvkvW~~KtteC~~T-------- 385 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDG--------------------------HHIISASSDGTVKVWHGKTTECLST-------- 385 (508)
T ss_pred hHHHhcCccccccceEEcCCC--------------------------CeEEEecCCccEEEecCcchhhhhh--------
Confidence 788999999999999999987 6999999999999999887442110
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEEEeccceEEEEECCCCceEEEEeC---CCCCeEEEEE
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVLDV 590 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSGs~DG~IrIWDl~tgkll~tL~g---Hs~~VtsLaf 590 (1491)
.+..+....|+.+..-|. -..++++...++|+|.++ .|+.++.+.. ..+...+.+.
T Consensus 386 -------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 386 -------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred -------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence 111234456777766664 457888888999999998 4888888753 2345566778
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+| .+.++.+.+.|+.++.|.+.+|++-+++..|...|..++-+|..+.||+-+.||.+++|.
T Consensus 446 Sp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99 677888999999999999999999999999999999999999999999999999999995
No 83
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.4e-25 Score=245.43 Aligned_cols=292 Identities=20% Similarity=0.309 Sum_probs=235.8
Q ss_pred EEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 278 LASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+..|.||...|.|++=+|.. ..+|+|+.||.|+|||+.+..++..+..|.+.|..|++... .+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc-----ceEEecCCcceee
Confidence 44567899999999999976 78999999999999999999999999999999999999882 6899999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
|-+... ...++. ....+..+.-+..+..++++|. .|.|||... ..++
T Consensus 134 wk~~~~-p~~til---------------------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---------~~Pv 180 (433)
T KOG0268|consen 134 WKIDGP-PLHTIL---------------------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR---------DNPV 180 (433)
T ss_pred eeccCC-cceeee---------------------ccccccccccccccccccccCc--eeeeccccc---------CCcc
Confidence 988653 222221 2344566666666778888875 489999854 3456
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
..+.-....|.++.|+|.- ...|++|+.|+.|.+||++......+.
T Consensus 181 ~smswG~Dti~svkfNpvE-------------------------TsILas~~sDrsIvLyD~R~~~Pl~KV--------- 226 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVE-------------------------TSILASCASDRSIVLYDLRQASPLKKV--------- 226 (433)
T ss_pred ceeecCCCceeEEecCCCc-------------------------chheeeeccCCceEEEecccCCcccee---------
Confidence 6667777888999999864 358999999999999999975432221
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCC
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~ 595 (1491)
.....-+.|+|+|.+-.+++|..|..++.||++. ..++....+|.+.|.+|+|+| .+
T Consensus 227 ---------------------i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG 284 (433)
T KOG0268|consen 227 ---------------------ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TG 284 (433)
T ss_pred ---------------------eeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Cc
Confidence 1123457799999888888999999999999976 456788899999999999999 55
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeC-CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccc
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h-~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~ 663 (1491)
.-+++||.|.+|+||.+..+.....+... ...|.++.||-|.+|+++|++|+.|++|.....+.+..+
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 66679999999999999888766655432 237999999999999999999999999998777654433
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.1e-24 Score=229.29 Aligned_cols=282 Identities=18% Similarity=0.296 Sum_probs=227.8
Q ss_pred EEEEEcC--CCCEEEEE------ECCCeEEEEECCCCCceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEc
Q 000454 289 TDLAVSS--NNALVASA------SNDCIIRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1491)
Q Consensus 289 tsLafSP--DG~lLASG------S~DGtIrVWDl~tgk~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD 358 (1491)
.++.||| .+++.++. ...|.+.|.++..++-+..+.. -...+..++|++... ..+++++.||+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e--~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE--NQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc--ceEEEEecCceEEEec
Confidence 5788999 34333322 2368899999876655555442 357799999999865 4899999999999999
Q ss_pred cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 359 l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
+..... +......|...|.++.|++ ++..+++++-|++|++|+... ...+.
T Consensus 90 ~~~~s~-------------------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------~~Sv~ 141 (311)
T KOG0277|consen 90 LTMPSK-------------------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------PNSVQ 141 (311)
T ss_pred cCCCCc-------------------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------CcceE
Confidence 543221 2233456899999999998 566788889999999999865 44677
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
++.+|...|...+|+|.. ++.|+++|.||++++||++..
T Consensus 142 Tf~gh~~~Iy~a~~sp~~-------------------------~nlfas~Sgd~~l~lwdvr~~---------------- 180 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHI-------------------------PNLFASASGDGTLRLWDVRSP---------------- 180 (311)
T ss_pred eecCCccEEEEEecCCCC-------------------------CCeEEEccCCceEEEEEecCC----------------
Confidence 899999999999999974 579999999999999998852
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCC
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~ 595 (1491)
+....+..|...|.++.|+.- ...|+||+.|+.|++||+++- .++..+.+|.-.|..|.|||...
T Consensus 181 -------------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 181 -------------GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred -------------CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 122236678889999999984 457889999999999999874 56889999999999999999888
Q ss_pred cEEEEEeCCCcEEEEeCCCC-ceEEEEeeCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 000454 596 RIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tG-k~l~~l~~h~~~VtslafSP-DG~~LAsgs~DG~I~IWdl 654 (1491)
.+||++++|-+++|||...+ .++.++..|..-|..+.||+ ++.++|.++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999999999999854 46667776777788899998 5779999999999999984
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.5e-23 Score=230.00 Aligned_cols=295 Identities=17% Similarity=0.279 Sum_probs=233.5
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------C------eEEEEEecCCCCeEEEEEcCCC
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------------A------YCLASCRGHEGDITDLAVSSNN 297 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------------g------~~l~tL~gH~~~VtsLafSPDG 297 (1491)
...+..|.+++.|.+|++||.++|||+.|..|+|.|++. | -.+++|..|...|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 356788999999999999999999999999999999862 1 3567888999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
..|++|+.|++|+++|+......+.++ ....+|.+|.|+|.|. +|+.|..--++++||+.+-++....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsa------- 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSA------- 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeec-------
Confidence 999999999999999997654333222 2567899999999998 8999999999999999987653322
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCc
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1491)
.....|...|+++.+++.|++.++|+.||.|+|||--.+ +++..+.. .
T Consensus 255 ----------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~----------A--- 302 (430)
T KOG0640|consen 255 ----------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN---------RCVRTIGN----------A--- 302 (430)
T ss_pred ----------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccH---------HHHHHHHh----------h---
Confidence 123458889999999999999999999999999986331 12211110 0
Q ss_pred cccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 456 ~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
T Consensus 303 -------------------------------------------------------------------------------- 302 (430)
T KOG0640|consen 303 -------------------------------------------------------------------------------- 302 (430)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCC--C---CeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT--E---STYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs--~---~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
.....|.+..|..+|+||++.+.|..+++|.+.+++++..+.|-. + --+...|......+|+---..+.+.-|
T Consensus 303 --H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 303 --HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred --cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence 012357888999999999999999999999999999999887642 1 123344554233344333345789999
Q ss_pred eCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 611 DIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 611 Dl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
|..++..+..+. +|.+.+..+.-||.+.-+++++.|-.+++|--
T Consensus 381 daRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 381 DARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 999987766654 67889999999999999999999999999963
No 86
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=246.48 Aligned_cols=331 Identities=17% Similarity=0.262 Sum_probs=262.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCC-----------CCEEEEEECCCeEEE
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL---ASCRGHEGDITDLAVSSN-----------NALVASASNDCIIRV 311 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l---~tL~gH~~~VtsLafSPD-----------G~lLASGS~DGtIrV 311 (1491)
..++.|++....|.+.-.|..|+|||+.+-..+ ..+-.|...|++|.--|. ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 356789999999999999999999999764332 233459999999877652 125889999999999
Q ss_pred EECCCCCceee-------------------------------------eccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 312 WRLPDGLPISV-------------------------------------LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 312 WDl~tgk~i~~-------------------------------------L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
|++..+..-.+ .-+..-.|.+++.+|+++ +|++|..-|.|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq---hLAsGDr~Gnl 483 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ---HLASGDRGGNL 483 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc---eecccCccCce
Confidence 99865311000 001233589999999998 99999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC---CCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA---NGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP---DG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
+||++........+ ..|...|.|+.|+. ..++||+++.|..|.|||+..
T Consensus 484 rVy~Lq~l~~~~~~--------------------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------- 535 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFM--------------------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------- 535 (1080)
T ss_pred EEEEehhhhhhhhe--------------------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------
Confidence 99999876655444 45899999999986 347899999999999999963
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
....+..+.+|...|++|.|...+. +..+++++.|..|.+--.+... .+. .
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gl------------------------n~~MiscGADksimFr~~qk~~-~g~--~-- 586 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGL------------------------NRKMISCGADKSIMFRVNQKAS-SGR--L-- 586 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCC------------------------ceEEEeccCchhhheehhcccc-Cce--e--
Confidence 2456788999999999999987752 3478999999887653222100 000 0
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeC---CCCCeEEE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVL 588 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g---Hs~~VtsL 588 (1491)
.+...-......+..++..|..+++++++.|..|+||++.+|+..+.|+| |.+....+
T Consensus 587 -------------------f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 587 -------------------FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred -------------------ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 00111112234578899999999999999999999999999999999975 66677888
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 589 afSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
...| .+.|||+.+.|.++.|+|..+|+++..+.+|...|+.+.|.+|-++|++.+.||.|+||.+..
T Consensus 648 ~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8999 788999999999999999999999999999999999999999999999999999999999843
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=237.01 Aligned_cols=284 Identities=21% Similarity=0.328 Sum_probs=245.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
-.|+++...+....++||+.|..+.++|..+++.+.+|.||...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD 403 (1491)
..|..+|+.+..+|.+. ||++++.||+..+.|++++.++...... ...-.+++.+|+||
T Consensus 300 ~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSDE------------------TSDVEYTSAAFHPD 358 (506)
T ss_pred ccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEeec------------------cccceeEEeeEcCC
Confidence 99999999999999998 9999999999999999999877665321 13345899999999
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
|.+|.+|..||.|+|||+.. ...+..+.+|+++|..|+|+.+| -+
T Consensus 359 gLifgtgt~d~~vkiwdlks---------~~~~a~Fpght~~vk~i~FsENG--------------------------Y~ 403 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKS---------QTNVAKFPGHTGPVKAISFSENG--------------------------YW 403 (506)
T ss_pred ceEEeccCCCceEEEEEcCC---------ccccccCCCCCCceeEEEeccCc--------------------------eE
Confidence 99999999999999999975 33677889999999999999987 48
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1491)
|++++.|+.|++||++..+... ........+|.++.|.+.|.+|+.++.+=.
T Consensus 404 Lat~add~~V~lwDLRKl~n~k----------------------------t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFK----------------------------TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred EEEEecCCeEEEEEehhhcccc----------------------------eeeccccccceeEEEcCCCCeEEeecceeE
Confidence 9999999999999999633110 011223346899999999999999988877
Q ss_pred EEEEEC--CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 564 ICVWNA--ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 564 IrIWDl--~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
|++++- ..+.++..+..|.+..+++.|.. ...+++++|.|..++|+.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 777774 35778888889999999999976 6789999999999888764
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.5e-23 Score=261.78 Aligned_cols=278 Identities=22% Similarity=0.328 Sum_probs=217.3
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CeEEEEEecCCCCeEEEEEc
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------------------AYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------------------g~~l~tL~gH~~~VtsLafS 294 (1491)
.+.+.++..|.+.|+|+.|+|||++||+||+|+.|.||.... .+++..+++|.+.|.+++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 456778889999999999999999999999999999998762 24678899999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
|++.+||+++.|++|.||+..+.+.+.++.+|.+.|..+.|.|-|+ +|++-+.|++|+||++.+-.+...+.-+..
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk---y~ASqsdDrtikvwrt~dw~i~k~It~pf~- 214 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK---YFASQSDDRTLKVWRTSDWGIEKSITKPFE- 214 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC---eeeeecCCceEEEEEcccceeeEeeccchh-
Confidence 9999999999999999999999999999999999999999999998 999999999999999776555444422111
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
..+....+..+.|+|||.+|++... -.++.|.+-.+ +..-..+-||..++.++.
T Consensus 215 -------------~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 215 -------------ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVR 272 (942)
T ss_pred -------------hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEE
Confidence 1234556889999999999998643 33577776543 555677899999999999
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (1491)
|+|.-+-.... .....-.... ...+++|+.|++|.||.....+....
T Consensus 273 FnP~lfe~~~~-------ng~~~~~~~~--y~i~AvgSqDrSlSVW~T~~~RPl~v------------------------ 319 (942)
T KOG0973|consen 273 FNPKLFERNNK-------NGTSTQPNCY--YCIAAVGSQDRSLSVWNTALPRPLFV------------------------ 319 (942)
T ss_pred eChHHhccccc-------cCCccCCCcc--eEEEEEecCCccEEEEecCCCCchhh------------------------
Confidence 99964211111 0000000000 02688999999999998765332111
Q ss_pred CCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc
Q 000454 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk 573 (1491)
...-....|..++|+|||-.|++++.||+|.++.+...+
T Consensus 320 ----i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 320 ----IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ----hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 111234579999999999999999999999999886543
No 89
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=7.6e-22 Score=227.91 Aligned_cols=367 Identities=13% Similarity=0.220 Sum_probs=257.1
Q ss_pred CCcccccceeEEEEccCCCCEEEEEEcC--CCCEEEEE--eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000454 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDR--SGRYVITG--SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA 301 (1491)
Q Consensus 226 ~~~~v~t~k~v~tL~GH~~~Vt~VaFSp--DG~~LATG--S~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLA 301 (1491)
..|+..++..++.|-.-...|+||+|++ .|.+|+.. +.+..+.|||+..+..+...+.-...|..+.|+|.+..|+
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nli 216 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLI 216 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEE
Confidence 3477777888888888888999999998 35555544 4467899999998888887777788899999999665555
Q ss_pred EEECCCeEEEEECCCCCceee---eccC-CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 302 SASNDCIIRVWRLPDGLPISV---LRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 302 SGS~DGtIrVWDl~tgk~i~~---L~gH-s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
.....+.+.+|+++.+..... +..+ ...|.|++|.+++. +++|..+|.|.||+..+.+..+...
T Consensus 217 it~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~-------- 284 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVH-------- 284 (626)
T ss_pred EEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEee--------
Confidence 545578999999988865443 3333 36899999999986 9999999999999997776655542
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC---CCCceeeeecCCCCCceEEEEccC
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD---QPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~---~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.|.+.|.+++...+|.+|- |+.|..|..||-.-.+..... +.+.......++.+ + -|--+.+
T Consensus 285 ------------aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d-i-~vGTtrN 349 (626)
T KOG2106|consen 285 ------------AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD-I-LVGTTRN 349 (626)
T ss_pred ------------ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc-E-EEeeccc
Confidence 4889999999999998666 999999999994221111110 00111111122221 0 0000000
Q ss_pred cc-----ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 455 AV-----ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 455 g~-----as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
.. ...+........+.... -....+.+++++++.|+.+++|+-. ...|...
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~delwg-la~hps~~q~~T~gqdk~v~lW~~~-------k~~wt~~---------------- 405 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGDELWG-LATHPSKNQLLTCGQDKHVRLWNDH-------KLEWTKI---------------- 405 (626)
T ss_pred eEEEeeecCCceEEEEecccceee-EEcCCChhheeeccCcceEEEccCC-------ceeEEEE----------------
Confidence 00 00000000000000000 0011235789999999999999811 1223322
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrI 609 (1491)
...++.|+.|+|.| .||+|+..|...|.|.++..++..-.. ..+++++.|+| ++.+||.|+.|+.|+|
T Consensus 406 ---------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 406 ---------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYI 473 (626)
T ss_pred ---------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence 23567899999999 999999999999999999666665554 88999999999 7889999999999999
Q ss_pred EeCCCC-ceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 610 WDIWEG-IPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 610 WDl~tG-k~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
|.+... ..+..+. .+..+|+.+.||+|+++|.+-+.|-.|..|...
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 999754 3333332 233689999999999999999999999999443
No 90
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.8e-23 Score=221.27 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=230.0
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
.+..+.++.++|.++.|.-+|+ +.++++.|.+|++|+...+.++.++ .+|...|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGn---Y~ltcGsdrtvrLWNp~rg~liktY--------------------sghG~EVlD~ 65 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN---YCLTCGSDRTVRLWNPLRGALIKTY--------------------SGHGHEVLDA 65 (307)
T ss_pred hceeecccccceEEEEEccCCC---EEEEcCCCceEEeecccccceeeee--------------------cCCCceeeec
Confidence 4567788999999999999998 9999999999999999998887776 5689999999
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+.+.|...|++|+.|..|.+||+.+ ++.++.+.+|.+.|+.++|....
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~T---------Gkv~Rr~rgH~aqVNtV~fNees----------------------- 113 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNT---------GKVDRRFRGHLAQVNTVRFNEES----------------------- 113 (307)
T ss_pred cccccccccccCCCCceEEEEEccc---------CeeeeecccccceeeEEEecCcc-----------------------
Confidence 9999999999999999999999987 56788999999999999999764
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
..+++|+.|.++++||.++.. ..|++.+......|.+|..+ +..|++|
T Consensus 114 ---SVv~SgsfD~s~r~wDCRS~s---------------------------~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 114 ---SVVASGSFDSSVRLWDCRSRS---------------------------FEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ---eEEEeccccceeEEEEcccCC---------------------------CCccchhhhhcCceeEEEec--ccEEEee
Confidence 589999999999999999744 24555566667788888775 5689999
Q ss_pred eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcce--EEEEEcCC
Q 000454 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL--VDGKFSPD 636 (1491)
Q Consensus 559 s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~V--tslafSPD 636 (1491)
+.||+++.||++.|++...+-+| +|+++.|++ ++..++.++.|++|++.|-.+|+++..+.+|...- .+++++..
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 99999999999999988777665 699999999 66666779999999999999999999999887643 46788888
Q ss_pred CCEEEEEeCCCcEEEEECCCCcccccc-------cceeeecCCCcceEEccCC
Q 000454 637 GASIILSDDVGQLYILNTGQGESQKDA-------KYDQFFLGDYRPLVQDTYG 682 (1491)
Q Consensus 637 G~~LAsgs~DG~I~IWdl~tG~~~~~~-------~~~~~fs~D~r~La~d~~G 682 (1491)
..++++|++||.|++||+-.+..+..+ ..++.++|.-..+++...+
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 899999999999999999887664432 2344555554444444333
No 91
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2e-22 Score=250.63 Aligned_cols=252 Identities=18% Similarity=0.242 Sum_probs=191.0
Q ss_pred EeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCC--------ceeeeccCCCceE
Q 000454 261 GSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGL--------PISVLRGHTAAVT 331 (1491)
Q Consensus 261 GS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD-G~lLASGS~DGtIrVWDl~tgk--------~i~~L~gHs~~Vt 331 (1491)
|+.++.|+||+......+..+.+|.+.|.+|+|+|+ +.+||+|+.||+|+||++.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888888999999999999999996 7899999999999999997642 3456789999999
Q ss_pred EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec
Q 000454 332 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1491)
Q Consensus 332 sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs 411 (1491)
+++|+|++. .+|++++.|++|+|||+++++....+. +...|.+++|+|+|.+|++++
T Consensus 130 sVaf~P~g~--~iLaSgS~DgtIrIWDl~tg~~~~~i~---------------------~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 130 IIDWNPMNY--YIMCSSGFDSFVNIWDIENEKRAFQIN---------------------MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEECCCCC--eEEEEEeCCCeEEEEECCCCcEEEEEe---------------------cCCcEEEEEECCCCCEEEEEe
Confidence 999999876 356799999999999999887544331 335699999999999999999
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG 491 (1491)
.|+.|+|||+++ ...+..+.+|.+.+....+
T Consensus 187 ~D~~IrIwD~Rs---------g~~i~tl~gH~g~~~s~~v---------------------------------------- 217 (568)
T PTZ00420 187 VGKHMHIIDPRK---------QEIASSFHIHDGGKNTKNI---------------------------------------- 217 (568)
T ss_pred cCCEEEEEECCC---------CcEEEEEecccCCceeEEE----------------------------------------
Confidence 999999999976 3344555666554322211
Q ss_pred eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc----eEEEE
Q 000454 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC----RICVW 567 (1491)
Q Consensus 492 tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG----~IrIW 567 (1491)
....|++++.+|++++.++ .|+||
T Consensus 218 ----------------------------------------------------~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 218 ----------------------------------------------------WIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ----------------------------------------------------EeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 1234567888888877664 69999
Q ss_pred ECCC-CceEEEEeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee--CCcceEEEEEcCCCC
Q 000454 568 NAAD-GSLVHSLTG--HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI--SRFRLVDGKFSPDGA 638 (1491)
Q Consensus 568 Dl~t-gkll~tL~g--Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~--h~~~VtslafSPDG~ 638 (1491)
|+++ ++++..+.. +.+.+.. .|.++.+.++++|+.|+.|++|++..+.. ..+.. +..++..++|.|...
T Consensus 246 Dlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 246 DLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 9884 556655433 2333333 34454788889999999999999987743 22221 345677889999653
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=239.18 Aligned_cols=283 Identities=18% Similarity=0.264 Sum_probs=234.2
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 285 EGDITDLAVSSNNAL-VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 285 ~~~VtsLafSPDG~l-LASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
.+.|.+++|+|...+ +|+.+ .-.+.||+..+...+..+......|+++.|..||. +|++|+..|.|+|||+.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~---LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR---LLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCe---EEEccCCcCcEEEeccccHH
Confidence 468999999995442 33333 34799999988888888887889999999999998 89999999999999976543
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
.+..+ ..|..+|..+.|+|.+ ..|++|+.|+.+++||+.+. .....+.+|
T Consensus 102 iLR~~--------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---------~v~~~l~~h 152 (487)
T KOG0310|consen 102 ILRQL--------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---------YVQAELSGH 152 (487)
T ss_pred HHHHH--------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---------EEEEEecCC
Confidence 33333 4588899999999954 57788889999999999762 346688999
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
++.|.+.+|+|.. +..++||+.||+|++||++...
T Consensus 153 tDYVR~g~~~~~~-------------------------~hivvtGsYDg~vrl~DtR~~~-------------------- 187 (487)
T KOG0310|consen 153 TDYVRCGDISPAN-------------------------DHIVVTGSYDGKVRLWDTRSLT-------------------- 187 (487)
T ss_pred cceeEeeccccCC-------------------------CeEEEecCCCceEEEEEeccCC--------------------
Confidence 9999999999864 3589999999999999998621
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
.......|..+|..+.+-|.|..||+++. ..|+|||+.+| +++..+..|...|+|+.+.. ++..|++|
T Consensus 188 ---------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~ 256 (487)
T KOG0310|consen 188 ---------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSG 256 (487)
T ss_pred ---------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeec
Confidence 22334568889999999999999999865 48999999855 55555556999999999998 55777799
Q ss_pred eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
|-|+.|+|||+.+.+.+..+. -.++|.+++.+||++.+++|..+|.+.+-+....
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 999999999999999999887 6789999999999999999999999988755443
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.5e-23 Score=244.53 Aligned_cols=282 Identities=22% Similarity=0.370 Sum_probs=242.9
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCCCeEE-EEEcC-CCCEEEEEECCC
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCRGHEGDITD-LAVSS-NNALVASASNDC 307 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l--~tL~gH~~~Vts-LafSP-DG~lLASGS~DG 307 (1491)
.+++-+.|.||...|..+++.+.. .++++|.||+++||+-.....+ ..+.+|.+.|.+ +++-+ ++-.|++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778999999999999887654 7999999999999998655544 356788888888 88885 555799999999
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
+|.+|.+....++.+|.+|...|.++....++ .|++|+.|.++++|-+.... ..
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~----~~iSgSWD~TakvW~~~~l~--~~-------------------- 135 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG----TLISGSWDSTAKVWRIGELV--YS-------------------- 135 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcC----ceEecccccceEEecchhhh--cc--------------------
Confidence 99999999999999999999999999987776 59999999999999765322 11
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
..+|...|+++++-|.+ .+++|+.|.+|++|.- ...+..+.+|.+.|+.+++-++.
T Consensus 136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-----------~~~l~tf~gHtD~VRgL~vl~~~------------ 191 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-----------GTLLKTFSGHTDCVRGLAVLDDS------------ 191 (745)
T ss_pred cCCcchheeeeeecCCC-cEEeccCcceeeeccC-----------CchhhhhccchhheeeeEEecCC------------
Confidence 35699999999999988 8999999999999987 45788999999999999999864
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
.|++|+.||.|++|++.. ..+.+..+|..-|.++.
T Consensus 192 ---------------~flScsNDg~Ir~w~~~g------------------------------e~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 192 ---------------HFLSCSNDGSIRLWDLDG------------------------------EVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ---------------CeEeecCCceEEEEeccC------------------------------ceeeeeeccceEEEEEE
Confidence 899999999999999853 45667788999999999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
..+++..+++++.|++++||+.. .+.+.+.-..-.|+++.+-+ ++.++ +|+.||.|+||...
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgDIv-vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGDIV-VGGSDGRVRVFTVD 288 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCCEE-EeccCceEEEEEec
Confidence 88999999999999999999975 88888886677899999887 56665 68899999999875
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=223.49 Aligned_cols=274 Identities=19% Similarity=0.303 Sum_probs=204.6
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEE-EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 241 GHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCL-ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 241 GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~T-g~~l-~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
.-.+.|.+|+||| ...+|+.||.||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4568899999999 556677999999999999976 4433 344579999999999999999999999999999999999
Q ss_pred CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEE
Q 000454 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 318 k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~s 397 (1491)
+ +..+..|.++|.++.|-+... ...|++|+.|.+|++||.+....+.++.+| ..+++
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---------------------eRvYa 161 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQLP---------------------ERVYA 161 (347)
T ss_pred C-eeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeecc---------------------ceeee
Confidence 4 566777999999999988764 237999999999999999987777666542 23444
Q ss_pred EEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccc
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~ 477 (1491)
+..- ..+++++..+..|.+|+++.+.. .+..+..
T Consensus 162 ~Dv~--~pm~vVata~r~i~vynL~n~~t-----------e~k~~~S--------------------------------- 195 (347)
T KOG0647|consen 162 ADVL--YPMAVVATAERHIAVYNLENPPT-----------EFKRIES--------------------------------- 195 (347)
T ss_pred hhcc--CceeEEEecCCcEEEEEcCCCcc-----------hhhhhcC---------------------------------
Confidence 3332 23566666666777777643210 0111100
Q ss_pred ccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
+..-.+.||+..+|....+.
T Consensus 196 ------------------------------------------------------------pLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 196 ------------------------------------------------------------PLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred ------------------------------------------------------------cccceeeEEEEEecCCceEe
Confidence 01123556666666666677
Q ss_pred EeccceEEEEECCCC--ceEEEEeCCCC---------CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc
Q 000454 558 AIMDCRICVWNAADG--SLVHSLTGHTE---------STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tg--kll~tL~gHs~---------~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~ 626 (1491)
|+-.|.+-|..+..+ +.-.+|+.|.. .|++|+|+| -...|+|+|.||++.+||-.....+.....+..
T Consensus 216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 777777777766665 33334555542 477899999 556777999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEEe
Q 000454 627 RLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 627 ~VtslafSPDG~~LAsgs 644 (1491)
+|+++.|+.+|.++|.+.
T Consensus 295 pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 295 PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccceeEecCCCCEEEEEe
Confidence 999999999999998763
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-21 Score=204.87 Aligned_cols=302 Identities=17% Similarity=0.249 Sum_probs=223.0
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------Ce---------EEEEEecCCCCeEEEEEcCC
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------AY---------CLASCRGHEGDITDLAVSSN 296 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------g~---------~l~tL~gH~~~VtsLafSPD 296 (1491)
.+..+.+|. .+..|.+|+|+|.|.+.|.|+...+.+|.-... +. ..+.-+.|.+.|.|.+|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 456666666 567899999999999999999999998875421 11 11223468999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCCc-----eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecC
Q 000454 297 NALVASASNDCIIRVWRLPDGLP-----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~-----i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~ 371 (1491)
|.+||+|+.|.+|++.-+....+ -..|.-|.+.|..++|..+...
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s------------------------------ 150 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES------------------------------ 150 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc------------------------------
Confidence 99999999999999986643322 1234456677777777554321
Q ss_pred CCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 372 ~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
.|.+|++++ .|..|++-|..+ +..+..+.+|++.|.++-
T Consensus 151 -------------------------------~~~il~s~gagdc~iy~tdc~~---------g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 151 -------------------------------GGAILASAGAGDCKIYITDCGR---------GQGFHALSGHTGHILALY 190 (350)
T ss_pred -------------------------------CceEEEecCCCcceEEEeecCC---------CCcceeecCCcccEEEEE
Confidence 123333333 244455555533 345566778888776653
Q ss_pred -EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 451 -FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 451 -fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
|+ +-+|++|+.|.+|++||++-........
T Consensus 191 swn----------------------------~~m~~sgsqdktirfwdlrv~~~v~~l~--------------------- 221 (350)
T KOG0641|consen 191 SWN----------------------------GAMFASGSQDKTIRFWDLRVNSCVNTLD--------------------- 221 (350)
T ss_pred Eec----------------------------CcEEEccCCCceEEEEeeeccceeeecc---------------------
Confidence 33 2389999999999999998532111000
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrI 609 (1491)
.....---....|.+++..|.|++|++|-.|....+||++.++.++.+..|+..|.++.|+| +..+++++++|..|++
T Consensus 222 -~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 222 -NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKL 299 (350)
T ss_pred -CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEE
Confidence 00000001235699999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred EeCCC----CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 610 WDIWE----GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 610 WDl~t----Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
-|+.- .-++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99842 12344555688888999999999999999999999999763
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.7e-23 Score=236.92 Aligned_cols=281 Identities=19% Similarity=0.266 Sum_probs=232.2
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 243 RNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~--~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
.+.|.+++|+|... +.+|+| -.|.||+..+....+++......|.++.|-.||++||+|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 47899999999542 344444 47999999988888888888899999999999999999999999999998776778
Q ss_pred eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 321 ~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
..+.+|+.+|..+.|+|.+. ..|++|++|+.+++||+.+......+ .+|...|.|.+|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v~~~l--------------------~~htDYVR~g~~ 161 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYVQAEL--------------------SGHTDYVRCGDI 161 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEEEEEe--------------------cCCcceeEeecc
Confidence 88999999999999999976 48899999999999999988742222 468999999999
Q ss_pred CCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccccc
Q 000454 401 NAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1491)
Q Consensus 401 SPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~ 479 (1491)
+|. +..+++|+.||.|++||++... ....--.|..+|..+.+-|.|
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~---------~~v~elnhg~pVe~vl~lpsg------------------------ 208 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT---------SRVVELNHGCPVESVLALPSG------------------------ 208 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC---------ceeEEecCCCceeeEEEcCCC------------------------
Confidence 995 5589999999999999998621 222334688899999999875
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe
Q 000454 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559 (1491)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs 559 (1491)
..|++++ ...+++||+.++. ..+.....|...|+|+++..++..|++|+
T Consensus 209 --s~iasAg-Gn~vkVWDl~~G~----------------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 209 --SLIASAG-GNSVKVWDLTTGG----------------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred --CEEEEcC-CCeEEEEEecCCc----------------------------eehhhhhcccceEEEEEeecCCceEeecc
Confidence 3555554 5689999998643 22333445889999999999999999999
Q ss_pred ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 560 ~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
-|+.|+|||+.+.+.++.+. ..++|.+++.+| +...++.|..+|.+.+-+..
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeehhh
Confidence 99999999999999999886 678899999999 66677789999988877543
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=222.86 Aligned_cols=249 Identities=19% Similarity=0.286 Sum_probs=202.7
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~--lLASGS~DGtI 309 (1491)
++.++..+..|.++|+|||.+ |.++|+||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 345577888999999999996 89999999999999999999999999999999999999999765 89999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
.+|+.....++..+++|.+.|+.|+.+|.++ +-++.+.|+.+++|++-.|+......+
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L------------------- 167 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNL------------------- 167 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCc---eEEEEcCCceeeeehhhcCccceeecc-------------------
Confidence 9999999999999999999999999999998 888999999999999988875544432
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
......+.|+|.|.+|+.+..+ .|-||.+.... .+..
T Consensus 168 --~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---------v~~~------------------------------- 204 (362)
T KOG0294|consen 168 --KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS---------VFRE------------------------------- 204 (362)
T ss_pred --CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh---------Hhhh-------------------------------
Confidence 2223448888988888777654 35566654210 0000
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
...+..+.++.|
T Consensus 205 -------------------------------------------------------------------i~~~~r~l~~~~- 216 (362)
T KOG0294|consen 205 -------------------------------------------------------------------IENPKRILCATF- 216 (362)
T ss_pred -------------------------------------------------------------------hhccccceeeee-
Confidence 000112334444
Q ss_pred CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS-Pdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
-++..|++|..|+.|.+||..+..+...+.+|...|.++.+- ...+.+|+|+|.||.|+|||+...
T Consensus 217 l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 217 LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 356789999999999999999999999999999999999843 225689999999999999999765
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-22 Score=242.20 Aligned_cols=279 Identities=19% Similarity=0.269 Sum_probs=234.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 289 tsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.-+.|+. .+.||.|. ...|.+|+..++........+...|+++.|+++|. +|++|..+|.|.|||....+.+..+
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~---~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS---HLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCC---EEEEeecCCeEEEEehhhccccccc
Confidence 3466774 44666664 45799999999987666666689999999999998 9999999999999999877766554
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceE
Q 000454 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1491)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1491)
. ..|...|.+++|. +..+.+|+.++.|.++|++..+. .+..+.+|...|..
T Consensus 256 ~-------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--------~~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 256 R-------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--------VVSTLQGHRQEVCG 306 (484)
T ss_pred c-------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--------hhhhhhcccceeee
Confidence 2 1278899999998 77899999999999999986432 22348899999999
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
+.|++++ .+|++|+.|+.+.|||...
T Consensus 307 Lkws~d~--------------------------~~lASGgnDN~~~Iwd~~~---------------------------- 332 (484)
T KOG0305|consen 307 LKWSPDG--------------------------NQLASGGNDNVVFIWDGLS---------------------------- 332 (484)
T ss_pred eEECCCC--------------------------CeeccCCCccceEeccCCC----------------------------
Confidence 9999986 6999999999999999853
Q ss_pred CCCCceeccCCCCCeeEEEEcCC-CCEEEEE--eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe-CC
Q 000454 529 RGGPRQRILPTPRGVNMIVWSLD-NRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YD 604 (1491)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPD-G~~LaSG--s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS-~D 604 (1491)
..+...+..|...|.+++|+|- ..+||+| +.|+.|++||..+|..+..+.. ...|..|.|++....++.+-| .+
T Consensus 333 -~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 333 -PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred -ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCC
Confidence 2456778899999999999995 4567775 4799999999999999998764 456999999996666766655 46
Q ss_pred CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 605 GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.|.||+..+.+++..+.+|...|..+++||||..|++|+.|.+|++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78999999999999999999999999999999999999999999999998553
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2e-22 Score=222.10 Aligned_cols=305 Identities=19% Similarity=0.258 Sum_probs=221.1
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEEe--cCCCCeEEEEEcCCCCEE-EEEECCCeEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCR--GHEGDITDLAVSSNNALV-ASASNDCIIR 310 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l--~tL~--gH~~~VtsLafSPDG~lL-ASGS~DGtIr 310 (1491)
+.+|+||.+.|+|++|+.||++|||++.|++|+||++.+.... +.++ -.-+..+.++|.||-+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4579999999999999999999999999999999999864321 1111 112356889999997744 4455566899
Q ss_pred EEECCC---CCcee---------eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCccc
Q 000454 311 VWRLPD---GLPIS---------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 311 VWDl~t---gk~i~---------~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
+|.+.. |.... .-+-|.-.|..+-....+. +|++++.|..|.+|+++ |+.+..+..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k---~imsas~dt~i~lw~lk-Gq~L~~idt-------- 226 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK---YIMSASLDTKICLWDLK-GQLLQSIDT-------- 226 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce---EEEEecCCCcEEEEecC-Cceeeeecc--------
Confidence 997642 22111 1123566677777766665 99999999999999998 777766632
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccc
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as 458 (1491)
....-+.++.+|+|++||+++-.-.|.||.+.-.+ ....+....+..+.||...|..++|+++.
T Consensus 227 ------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S--- 290 (420)
T KOG2096|consen 227 ------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSS--- 290 (420)
T ss_pred ------------ccccccceeeCCCCcEEEEecCCCCceEEEEEecc-CcchhhhhhhheeccchhheeeeeeCCCc---
Confidence 22334578899999999999999999999985322 23344456677899999999999999985
Q ss_pred ccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
.++++.|.||+++|||+.-+....... +.++. ++. -+..
T Consensus 291 -----------------------~r~vtvSkDG~wriwdtdVrY~~~qDp-----k~Lk~------------g~~-pl~a 329 (420)
T KOG2096|consen 291 -----------------------TRAVTVSKDGKWRIWDTDVRYEAGQDP-----KILKE------------GSA-PLHA 329 (420)
T ss_pred -----------------------ceeEEEecCCcEEEeeccceEecCCCc-----hHhhc------------CCc-chhh
Confidence 689999999999999987422111100 00000 000 0111
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.......++++|.|+.||.+. ...|++|..++|+..-.+ ..|...|.+|+|++ ++++++|+| |..++++.-
T Consensus 330 ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 330 AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 122334799999999888764 558999999999877766 46899999999999 788988887 667777653
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=237.66 Aligned_cols=285 Identities=18% Similarity=0.347 Sum_probs=237.1
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC--ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGt 353 (1491)
+....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.+++. .+++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~---~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK---HVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc---eEEeecCCCc
Confidence 3445667899999999999998999999999999999987665 6788888899999999999987 8999999999
Q ss_pred EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 354 VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
+++|++...+...++ .+|...|+++.|......+++|+.|.+|++||+.+..+
T Consensus 243 ~r~Wnvd~~r~~~TL--------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C------- 295 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL--------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC------- 295 (459)
T ss_pred eeeeeccchhhhhhh--------------------cccccceeeehhhccccceeeccccchhhhhhhhhhhe-------
Confidence 999999988766655 45999999999988777799999999999999975332
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
...+. ....+..|...+ ..+++|..|++|++||+++..
T Consensus 296 --~kt~l-~~S~cnDI~~~~----------------------------~~~~SgH~DkkvRfwD~Rs~~----------- 333 (459)
T KOG0288|consen 296 --SKTVL-PGSQCNDIVCSI----------------------------SDVISGHFDKKVRFWDIRSAD----------- 333 (459)
T ss_pred --ecccc-ccccccceEecc----------------------------eeeeecccccceEEEeccCCc-----------
Confidence 11111 122344444432 368899999999999998633
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC----CCCeEEEE
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLD 589 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH----s~~VtsLa 589 (1491)
.....+..+.|+++..+++|..|.+++.|.++.+.|+.+....+.+.+. ....+.+.
T Consensus 334 -------------------~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 334 -------------------KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred -------------------eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 1222334458999999999999999999999999999999888877532 23478899
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc--ceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~--~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
||| ++.|+++||.||.|+||++.+|++...+..... .|+++.|+|-|..|++++.++.+.+|
T Consensus 395 fSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 395 FSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999 889999999999999999999999998876555 49999999999999999999999999
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.7e-21 Score=222.41 Aligned_cols=295 Identities=16% Similarity=0.184 Sum_probs=212.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCCceeeeccCCCceEEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lL-ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsL 333 (1491)
+..+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35788999999999999999999998886544 6789999999976 5667789999999999988777765443 5678
Q ss_pred EecCCCCceEEE-EEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC
Q 000454 334 AFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 334 aFSPdg~s~~~L-aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~ 412 (1491)
+|+|+++ .+ ++++.++.|++||+.+...+..+. ....+.+++|+|+|.+++++..
T Consensus 79 ~~~~~g~---~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 79 ALHPNGK---ILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EECCCCC---EEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECCCCCEEEEEec
Confidence 9999987 45 455678999999998766544431 1223578999999999998887
Q ss_pred Cc-eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE-EEEeCC
Q 000454 413 DT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRD 490 (1491)
Q Consensus 413 DG-~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L-aSgS~D 490 (1491)
++ .+.+||..+. .....+. ....+..+.|+|++ ..| +++..+
T Consensus 135 ~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg--------------------------~~l~~~~~~~ 178 (300)
T TIGR03866 135 TTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG--------------------------KELWVSSEIG 178 (300)
T ss_pred CCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC--------------------------CEEEEEcCCC
Confidence 65 5677888642 1222221 22345678898876 345 455679
Q ss_pred CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE-eccceEEEEEC
Q 000454 491 GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNA 569 (1491)
Q Consensus 491 GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG-s~DG~IrIWDl 569 (1491)
+.|.+||+.+.+..... ..... . ..........++|+|+|++++++ ..++.|.+||+
T Consensus 179 ~~v~i~d~~~~~~~~~~-------~~~~~----------~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKI-------TFEIP----------G-----VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CEEEEEEcCcceeeeee-------eeccc----------c-----cccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999999875421110 00000 0 00001123468899999986554 45678999999
Q ss_pred CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 570 ~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
.+++.+..+. +...+.+++|+|++..++++++.+|.|+|||+.+++++..+..+ ...+.++|+|
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9998877654 34578999999955544444567999999999999999999855 5568888876
No 102
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.4e-23 Score=234.78 Aligned_cols=289 Identities=16% Similarity=0.281 Sum_probs=231.1
Q ss_pred EEEEccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 236 IKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG-~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++.++..|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45789999999999999976 7899999999999999999999999999999999999986 67889999999999997
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.- .++.++.+ ...+..|.-+..+. .++++|.+ |.|||..-...+..+. -....
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~---~FaTcGe~--i~IWD~~R~~Pv~sms--------------------wG~Dt 189 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNS---VFATCGEQ--IDIWDEQRDNPVSSMS--------------------WGADS 189 (433)
T ss_pred cC-Ccceeeec-cccccccccccccc---cccccCce--eeecccccCCccceee--------------------cCCCc
Confidence 54 46666653 34566776666554 78888865 9999997666555552 24567
Q ss_pred eEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|.++.|+|-. .+|++++.|+.|.|||++.... .+.+. -...-+.|+|+|.+
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi----~~mRTN~IswnPea------------------ 241 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI----LTMRTNTICWNPEA------------------ 241 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCc------cceee----eeccccceecCccc------------------
Confidence 9999999965 5677777999999999986432 11111 12345678999965
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
..|++++.|..+..+|++... .++....+|...|..+.|||.|+
T Consensus 242 --------fnF~~a~ED~nlY~~DmR~l~----------------------------~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 242 --------FNFVAANEDHNLYTYDMRNLS----------------------------RPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred --------cceeeccccccceehhhhhhc----------------------------ccchhhcccceeEEEeccCCCcc
Confidence 479999999999999998532 45566778999999999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~g-Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
-+++|+.|.+|+||.+..+...-.+.. --..|.|+.|+- +.+++++|+.|+.|++|.....+.+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999987654433311 123589999998 7899999999999999987654443
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=3.6e-22 Score=238.28 Aligned_cols=283 Identities=19% Similarity=0.300 Sum_probs=238.9
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce--eeeccCCCceEE-EEecCCCCceEEEEEEeCCC
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI--SVLRGHTAAVTA-IAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i--~~L~gHs~~Vts-LaFSPdg~s~~~LaSgS~DG 352 (1491)
++-+.+.||...|..+++.+.. .+++++.||+++||+-.....+ ..+.+|.+.|.. +++-+..+ ..|++|+.|.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~--~~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK--GRLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC--cceEeecccc
Confidence 4567889999999999987554 8999999999999997555433 456778888877 88876322 2699999999
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCC
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~ 432 (1491)
+|.+|.+.+......+ .+|...|.|++...++. +++|+.|.+++||..
T Consensus 82 ~i~v~~~~~~~P~~~L--------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~----------- 129 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTL--------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI----------- 129 (745)
T ss_pred eEEEEecCCCCchhhh--------------------hccccceeeeecCCcCc-eEecccccceEEecc-----------
Confidence 9999999877765554 56999999999888887 999999999999988
Q ss_pred CceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccc
Q 000454 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1491)
Q Consensus 433 ~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~ 512 (1491)
......+.+|...|+++.+-|. +.++|||.|.+|++|.-.
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e---------------------------~~~vTgsaDKtIklWk~~------------- 169 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPE---------------------------NTYVTGSADKTIKLWKGG------------- 169 (745)
T ss_pred hhhhcccCCcchheeeeeecCC---------------------------CcEEeccCcceeeeccCC-------------
Confidence 4466679999999999999886 389999999999999532
Q ss_pred ccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec
Q 000454 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP 592 (1491)
..+..+.+|...|+.+++-+++. +++++.||.|++|++ +|.++..+.||+.-|+++...+
T Consensus 170 ------------------~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 170 ------------------TLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred ------------------chhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 34567788999999999988754 778889999999999 8999999999999999999666
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 593 dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+..+++|+|.|++++||+.. .+.+.+......|+++++-++|. |++|+.||.|+||.....
T Consensus 230 -~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 230 -SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 66788899999999999986 88888885566899999988886 788888999999998643
No 104
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=233.76 Aligned_cols=310 Identities=16% Similarity=0.199 Sum_probs=234.0
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC----ceeee-ccCCCceEEEEecCCCCceEEEEEEe
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL----PISVL-RGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk----~i~~L-~gHs~~VtsLaFSPdg~s~~~LaSgS 349 (1491)
+.+-..+.+|+..|.++++.|.|-.|++|+.|.+|++||+.... ..+.+ ......|.+++|++.+. .|++.+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~---~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD---QILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC---eEEEEe
Confidence 44556788999999999999999999999999999999996432 11222 23456899999999987 788888
Q ss_pred CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCC
Q 000454 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDD 428 (1491)
Q Consensus 350 ~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~ 428 (1491)
.....+|+|-..........- ..-..-.....+|...++|.+|+|+. ..|++++.||+++||++...+..
T Consensus 234 g~aqakl~DRdG~~~~e~~KG--------DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q- 304 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKG--------DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ- 304 (641)
T ss_pred cCcceeEEccCCceeeeeecc--------chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-
Confidence 888999999765544333210 00111123456789999999999965 57889999999999999754311
Q ss_pred CCCCCceeee--ecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcc
Q 000454 429 SDQPNHEIDV--LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1491)
Q Consensus 429 s~~~~~~i~~--l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~ 506 (1491)
.+.+.. ..+..-.++..+|++++ ..|++|..||.|.+|+.......
T Consensus 305 ----~qVik~k~~~g~Rv~~tsC~~nrdg--------------------------~~iAagc~DGSIQ~W~~~~~~v~-- 352 (641)
T KOG0772|consen 305 ----LQVIKTKPAGGKRVPVTSCAWNRDG--------------------------KLIAAGCLDGSIQIWDKGSRTVR-- 352 (641)
T ss_pred ----eeEEeeccCCCcccCceeeecCCCc--------------------------chhhhcccCCceeeeecCCcccc--
Confidence 111111 12334578899999986 68999999999999998642211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCC
Q 000454 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTE 583 (1491)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~ 583 (1491)
.....-..|.. .|+||+||+||++|++-+.|+++++||++.. +++.+..+-..
T Consensus 353 ------------------------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t 408 (641)
T KOG0772|consen 353 ------------------------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT 408 (641)
T ss_pred ------------------------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence 01111234544 7999999999999999999999999999874 45555544322
Q ss_pred --CeEEEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 584 --STYVLDVHPFNPRIAMSAG------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 584 --~VtsLafSPdd~~lLaSgS------~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+-+.++||| +.++|+||. ..|.+.+||..+...+..+......|..+.|+|--+.|++|+.||.++||=
T Consensus 409 ~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 409 PFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 456789999 677888875 357899999999999999988888999999999999999999999999874
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=221.47 Aligned_cols=324 Identities=20% Similarity=0.277 Sum_probs=253.4
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecC
Q 000454 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1491)
Q Consensus 258 LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSP 337 (1491)
|++.-.+++++ .++++.+.||...|+.++.......+.+++.|.+.+||.+++|+|+..+.||.+.|.+|.|++
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc
Confidence 44445556543 346677889999999999988778999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC-------------CC------cccC-CCCCCCCCCCCCCcceEE
Q 000454 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP-------------SD------AVAG-RNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 338 dg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~-------------~~------~~~g-~~~~~~~s~~~h~~~V~s 397 (1491)
.+. ++++++.|++-.||...-.-.++.-..+.. .. ...+ ..-.+...+.+|...|.+
T Consensus 201 s~~---L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 201 SGL---LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccc---eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 886 899999999999997431111111000000 00 0000 011223445678889999
Q ss_pred EEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccc
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~ 477 (1491)
+.|-..|..+++++.|.+..+||+++ +..+..+.||....+.++-+|..
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEt---------ge~v~~LtGHd~ELtHcstHptQ---------------------- 326 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVET---------GEVVNILTGHDSELTHCSTHPTQ---------------------- 326 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeecc---------CceeccccCcchhccccccCCcc----------------------
Confidence 99999999999999999999999987 56788899999999988888763
Q ss_pred ccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
.++++.+.|.+.++||++.. ...+..+.+|...|+++.|..+. .+++
T Consensus 327 ----rLVvTsSrDtTFRLWDFRea----------------------------I~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 327 ----RLVVTSSRDTTFRLWDFREA----------------------------IQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred ----eEEEEeccCceeEeccchhh----------------------------cceeeeecccccceeEEEEecCC-ceee
Confidence 68899999999999999831 13455678999999999998875 5889
Q ss_pred EeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE-----eeCCcceEEE
Q 000454 558 AIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY-----EISRFRLVDG 631 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l-----~~h~~~Vtsl 631 (1491)
|+.|.+|+|||+++.+ ++.++. -..+++.++++. +..+++.--.+..|++||+ +|..+..+ ++|..-|+|+
T Consensus 374 gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred cCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEec-CCCccccCCcccccccceeeeee
Confidence 9999999999998854 566665 356788999988 7778887888889999999 56555544 3566789999
Q ss_pred EEcCCC--CEEEEEeCCCcEEEEECCCC
Q 000454 632 KFSPDG--ASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 632 afSPDG--~~LAsgs~DG~I~IWdl~tG 657 (1491)
+|..+- .-|++++-|..+.-|.+...
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccccCcccccccccccceeeeeEeccc
Confidence 998654 45788899999999998653
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-21 Score=204.58 Aligned_cols=299 Identities=22% Similarity=0.359 Sum_probs=236.1
Q ss_pred ccccccccccccCccccccCCCcceeeeccccCCC------cccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCe
Q 000454 193 DQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPS------TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 266 (1491)
Q Consensus 193 d~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~a~~~------~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGt 266 (1491)
..|+.+.|.+.|+.++.....+.++...|...+.. ..+...-..++-+.|.+.|+|++|+|+|.+||||+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 45788889999998888888888877766432211 111122344566789999999999999999999999999
Q ss_pred EEEEECCCCeEE-----EEEecCCCCeEEEEEcCC----CCEEEEEEC-CCeEEEEECCCCCceeeeccCCCceEEEE-e
Q 000454 267 VKIWSMETAYCL-----ASCRGHEGDITDLAVSSN----NALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIA-F 335 (1491)
Q Consensus 267 IrIWDl~Tg~~l-----~tL~gH~~~VtsLafSPD----G~lLASGS~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLa-F 335 (1491)
|++.-.....+. ..|.-|.+.|.+++|-.+ +.+|++++. |..|.+-|..+|+..+.+.+|++.|.++- |
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw 192 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW 192 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe
Confidence 999876543332 246679999999999653 457777654 78889999999999999999999998874 4
Q ss_pred cCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCce
Q 000454 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1491)
Q Consensus 336 SPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~ 415 (1491)
+. - .+++|+.|.+|++||++-..++..+...... .+-....|.+++..|.|++|++|-.|..
T Consensus 193 n~--~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------------~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 193 NG--A---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------------GGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred cC--c---EEEccCCCceEEEEeeeccceeeeccCcccC-------------CCcccceeEEEEECCCcceeeeccCCCc
Confidence 33 2 8999999999999999988777666322111 1123467999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrI 495 (1491)
..+||++. .+.+..+..|...|.++.|+|.. .++++|+.|..|++
T Consensus 255 c~lydirg---------~r~iq~f~phsadir~vrfsp~a--------------------------~yllt~syd~~ikl 299 (350)
T KOG0641|consen 255 CMLYDIRG---------GRMIQRFHPHSADIRCVRFSPGA--------------------------HYLLTCSYDMKIKL 299 (350)
T ss_pred eEEEEeeC---------CceeeeeCCCccceeEEEeCCCc--------------------------eEEEEecccceEEE
Confidence 99999976 56788899999999999999975 58999999999999
Q ss_pred EecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 496 WDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
-|+...- ...-++..+..|...+..+.|+|..--+++.+.|.++.+|-+
T Consensus 300 tdlqgdl-------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 300 TDLQGDL-------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eecccch-------------------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9887411 011234445668888889999999988999999999999976
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=239.74 Aligned_cols=281 Identities=17% Similarity=0.282 Sum_probs=231.1
Q ss_pred CCCCEEEEEECCCeEEEEECCCCC------ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC--ccc
Q 000454 295 SNNALVASASNDCIIRVWRLPDGL------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ--FSP 366 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk------~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~--~~~ 366 (1491)
|.+++|++|+.||.|++|++.... .+..+..|..+|..++.+.+++ .|++++.|-+|++|+...+. +..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~---tlIS~SsDtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK---TLISASSDTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC---ceEEecCCceEEEeecccCcchhHh
Confidence 467789999999999999986432 4778889999999999999987 89999999999999987653 332
Q ss_pred eeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE-CCCCCEEEEecCCceEEEEeCCCCCC--CCCCCCCceeeee-cCC
Q 000454 367 RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF-NANGTVFVTGSSDTLARVWNACKPNT--DDSDQPNHEIDVL-SGH 442 (1491)
Q Consensus 367 ~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf-SPDG~~LasGs~DG~IrVWDl~t~~~--~~s~~~~~~i~~l-~gH 442 (1491)
+ .+.|...|.|+++ -++..++|+||-|+.|.|||+.++.. ....... ....+ .++
T Consensus 112 t--------------------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~sG~ 170 (735)
T KOG0308|consen 112 T--------------------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLGSGP 170 (735)
T ss_pred h--------------------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCCCCC
Confidence 2 3569999999999 77888999999999999999987522 1111111 22223 388
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
...|++++..+.+ ..|++|+..+.|++||.++.+
T Consensus 171 k~siYSLA~N~t~--------------------------t~ivsGgtek~lr~wDprt~~-------------------- 204 (735)
T KOG0308|consen 171 KDSIYSLAMNQTG--------------------------TIIVSGGTEKDLRLWDPRTCK-------------------- 204 (735)
T ss_pred ccceeeeecCCcc--------------------------eEEEecCcccceEEecccccc--------------------
Confidence 8899999998875 489999999999999999744
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
.+..+.+|...|..+..+.||+.+++++.||+|++||+...++++++..|...|+++..+| +=..+++|+
T Consensus 205 ---------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~ 274 (735)
T KOG0308|consen 205 ---------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGG 274 (735)
T ss_pred ---------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecC
Confidence 3455679999999999999999999999999999999999999999999999999999998 667888999
Q ss_pred CCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 603 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 603 ~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
.||.|..=|+.+......+.....+|..+..+...+-+-+++.|+.|.-|...
T Consensus 275 rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 275 RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999999998854444443356678888877655556778888999999763
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.8e-20 Score=219.53 Aligned_cols=471 Identities=13% Similarity=0.130 Sum_probs=306.1
Q ss_pred CCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCCeEE
Q 000454 213 APSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITD 290 (1491)
Q Consensus 213 ~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t--L~gH~~~Vts 290 (1491)
..+|.++.....+..|++.++++...+....++|++++.+|.+..++.|++||.+..++...+..... |.-.++.|.+
T Consensus 80 ~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 34566777778888899999999999999999999999999999999999999888889888876543 4445789999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCceeeec--------cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR--------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 291 LafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~--------gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
++|+|++..||+|+.||.|++||+.++..+.... +...-|+++.|..++ .|++|..-|+|.+||...+
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~----tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS----TIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC----cEEEecCCceEEEEcccCc
Confidence 9999999999999999999999999987766221 134568999999776 6999999999999999998
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
.+++.+. .|...|.|++..+++..+++++.|+.|..|...+... .+........|
T Consensus 236 TLiqS~~--------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-----~wv~~~~r~~h 290 (691)
T KOG2048|consen 236 TLIQSHS--------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-----EWVINSRRDLH 290 (691)
T ss_pred chhhhhh--------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-----ceeeeccccCC
Confidence 8777663 3888999999999999999999999999888765322 13344556788
Q ss_pred CCCceEEEEccCccccccc-----cccCCCC-CCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 443 ENDVNYVQFSGCAVASRFS-----LADSSKE-DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s-----~~~~~~~-~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
...|.+++..++...+... +...... ...-...........+.++..+..+.+|...... .|. +
T Consensus 291 ~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~------lwr----l 360 (691)
T KOG2048|consen 291 AHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVD------LWR----L 360 (691)
T ss_pred cccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccccc------cee----c
Confidence 8899999988763211110 0000000 0000001111111222223333333344222110 000 0
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-----eCCCCCeEEEEEe
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-----TGHTESTYVLDVH 591 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-----~gHs~~VtsLafS 591 (1491)
... ............+........|.+.++||+|++|+.+.- ..++||.+..-..+... ....-....+.|+
T Consensus 361 GS~--~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft 437 (691)
T KOG2048|consen 361 GSV--ILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFT 437 (691)
T ss_pred cCc--ccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEE
Confidence 000 000000111122333445567999999999999998753 36778877542222221 1222346778888
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCc--eEEEEe--eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccc----
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEGI--PIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA---- 663 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tGk--~l~~l~--~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~---- 663 (1491)
-+...+++..-.+..+.++++.+.. .+..+. .....|..+..||||+|||+.+..|.|.+|++.+++.....
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln 517 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN 517 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC
Confidence 7555555544477888888887643 333332 23447889999999999999999999999999998753222
Q ss_pred --cceeeec-CCCcceEEccCCCEEEccccccCccccCCCcccccc-CCCCCCcchhhhhhcccccccEEEcCCC
Q 000454 664 --KYDQFFL-GDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSA-MIPYPEPYQTMYQQRRLGALGIEWRPSS 734 (1491)
Q Consensus 664 --~~~~~fs-~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s-~~p~p~~~q~l~q~~~~~vl~lafSPDG 734 (1491)
.....|+ ..+..|+....+.-+++-... ..++....+..+ ++| ..+ +.....+.++.|+|.-
T Consensus 518 ~~vTa~~~~~~~~~~lvvats~nQv~efdi~---~~~l~~ws~~nt~nlp--k~~----~~l~~~~~gisfd~~n 583 (691)
T KOG2048|consen 518 IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE---ARNLTRWSKNNTRNLP--KEP----KTLIPGIPGISFDPKN 583 (691)
T ss_pred cceeeeeccccccCcEEEEecCCeEEEEecc---hhhhhhhhhccccccc--cCh----hhcCCCCceEEeCCCC
Confidence 2445666 455556666555555542221 111222222222 222 222 2355667788888743
No 109
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=3.2e-21 Score=238.61 Aligned_cols=266 Identities=16% Similarity=0.192 Sum_probs=199.2
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTV 406 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~ 406 (1491)
..|....+++++. .+++++.+.....|+...+..+ +.... .|+.........+|...|.+++|+| ++.+
T Consensus 21 ~~i~~~~~~~d~~---~~~~~n~~~~a~~w~~~gg~~v--~~~~~-----~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 21 LNVTPSTALWDCS---NTIACNDRFIAVPWQQLGSTAV--LKHTD-----YGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred eccccccccCCCC---CcEeECCceEEEEEecCCceEE--eeccc-----cccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 4456666777755 5788888888888987655321 11110 1111111223467899999999999 8899
Q ss_pred EEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE
Q 000454 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1491)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS 486 (1491)
|++|+.|+.|+||++...... ......+..+.+|...|.+++|+|.+ .++|++
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~--~~~~~~l~~L~gH~~~V~~l~f~P~~-------------------------~~iLaS 143 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLT--QNISDPIVHLQGHTKKVGIVSFHPSA-------------------------MNVLAS 143 (493)
T ss_pred EEEEeCCCEEEEEecCCCccc--cccCcceEEecCCCCcEEEEEeCcCC-------------------------CCEEEE
Confidence 999999999999999653211 11123567789999999999999974 358999
Q ss_pred EeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEE
Q 000454 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1491)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrI 566 (1491)
++.|++|+|||+.+++ ....+..|...|.+++|+|+|.+|++++.|+.|+|
T Consensus 144 gs~DgtVrIWDl~tg~-----------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 144 AGADMVVNVWDVERGK-----------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EeCCCEEEEEECCCCe-----------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 9999999999998632 22344567888999999999999999999999999
Q ss_pred EECCCCceEEEEeCCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEeCCCCc-eEEEEeeCC-cceEEEEEcCCCCEE
Q 000454 567 WNAADGSLVHSLTGHTES-TYVLDVHPFNPRIAMSA---GYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSPDGASI 640 (1491)
Q Consensus 567 WDl~tgkll~tL~gHs~~-VtsLafSPdd~~lLaSg---S~DGtIrIWDl~tGk-~l~~l~~h~-~~VtslafSPDG~~L 640 (1491)
||+.+++.+..+.+|.+. +..+.|.+.+..++.+| +.|+.|+|||+.+.. ++..+..+. ..+....|++|+.+|
T Consensus 195 wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 999999999999999875 45678888555555444 258999999998754 444443333 355567899999999
Q ss_pred EEEe-CCCcEEEEECCCCcc
Q 000454 641 ILSD-DVGQLYILNTGQGES 659 (1491)
Q Consensus 641 Asgs-~DG~I~IWdl~tG~~ 659 (1491)
++++ .||.|++|++..++.
T Consensus 275 ~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEeCCCeEEEEEeeCCce
Confidence 9887 599999999987754
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.7e-21 Score=224.36 Aligned_cols=273 Identities=19% Similarity=0.266 Sum_probs=225.6
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee-----------------ee-ccCCCceEEEEecCCCC
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-----------------VL-RGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~-----------------~L-~gHs~~VtsLaFSPdg~ 340 (1491)
..+..|.-+|++|+++|++.++++++.+|+|.=|++.+|+... .- ++|...|.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3456799999999999999999999999999999998876330 11 26888999999999998
Q ss_pred ceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEe
Q 000454 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 341 s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWD 420 (1491)
+|++|+.|..|.||+.++.+.+..+ .+|.+.|.+++|-.....|++++.|..|++|+
T Consensus 216 ---ylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 216 ---YLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred ---EEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecCCceEEEe
Confidence 9999999999999999998876654 45899999999998888999999999999999
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE-EeCCCeEEEEecC
Q 000454 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRDGSAIIWIPR 499 (1491)
Q Consensus 421 l~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS-gS~DGtIrIWDl~ 499 (1491)
+.. ...+..+.+|.+.|..|..... ..++| |+.|+++++|++.
T Consensus 273 ~~~---------~s~vetlyGHqd~v~~IdaL~r---------------------------eR~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 273 IDQ---------LSYVETLYGHQDGVLGIDALSR---------------------------ERCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred hhH---------hHHHHHHhCCccceeeechhcc---------------------------cceEEeccccceeEEEecc
Confidence 964 4567788999999998877643 24554 5599999999885
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe
Q 000454 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1491)
Q Consensus 500 s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~ 579 (1491)
.. ....+.++...+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+..
T Consensus 317 ee------------------------------sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 317 EE------------------------------SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred cc------------------------------ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence 31 12334566778889998654 678999999999999999988887653
Q ss_pred -CC-----------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeeCCcceEEEEEcCCCCEEEEE
Q 000454 580 -GH-----------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG----IPIRIYEISRFRLVDGKFSPDGASIILS 643 (1491)
Q Consensus 580 -gH-----------s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG----k~l~~l~~h~~~VtslafSPDG~~LAsg 643 (1491)
+| ...|++|+..| +..++++|+.+|.|++|-+.+| .++..+. -.+-|+.++|+++|++|++|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 22 12789999999 8899999999999999999988 3445554 56679999999999988877
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.8e-22 Score=213.24 Aligned_cols=259 Identities=23% Similarity=0.361 Sum_probs=207.9
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 000454 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVW 312 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~gH~~~VtsLafSP--DG~lLASGS~DGtIrVW 312 (1491)
.-.+|.+.|..+..+--|++|||++.|++|+|+.+... .++.+|.||.++|+.++|.. .|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999999999999999999999999754 57889999999999999976 89999999999999999
Q ss_pred ECCCCC--ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 313 RLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 313 Dl~tgk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
.-.+|+ .......|...|++|+|.|.+-. ..|++++.||.|.|.+++....-.. ......
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheyg-l~LacasSDG~vsvl~~~~~g~w~t-----------------~ki~~a 147 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYG-LLLACASSDGKVSVLTYDSSGGWTT-----------------SKIVFA 147 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccc-eEEEEeeCCCcEEEEEEcCCCCccc-----------------hhhhhc
Confidence 988773 34556789999999999998743 4899999999999998875411111 112245
Q ss_pred CCcceEEEEECCC---C-----------CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 391 QSHQIFCCAFNAN---G-----------TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 391 h~~~V~slafSPD---G-----------~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
|.-.|++++|.|. | +.|++|+.|..|+||+.... ....-..+.+|.+.|+.++|.|...
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-------~w~~e~~l~~H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-------SWKLERTLEGHKDWVRDVAWAPSVG 220 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-------chhhhhhhhhcchhhhhhhhccccC
Confidence 7788999999885 4 56999999999999998653 2344556899999999999999731
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
+....|++|+.||++.||..... ...|.. ..+
T Consensus 221 ----------------------l~~s~iAS~SqDg~viIwt~~~e-----~e~wk~---------------------tll 252 (299)
T KOG1332|consen 221 ----------------------LPKSTIASCSQDGTVIIWTKDEE-----YEPWKK---------------------TLL 252 (299)
T ss_pred ----------------------CCceeeEEecCCCcEEEEEecCc-----cCcccc---------------------ccc
Confidence 11358999999999999976521 112211 112
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
...+..+..+.||+.|.+|++++.|+.|.+|--
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 234567899999999999999999999999964
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.2e-22 Score=227.80 Aligned_cols=299 Identities=20% Similarity=0.300 Sum_probs=238.2
Q ss_pred EEeCC-CeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCCceeeeccCCCceEEEEec
Q 000454 260 TGSDD-RLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336 (1491)
Q Consensus 260 TGS~D-GtIrIWDl~Tg~~l~tL~gH-~~~VtsLafSPDG~lLASGS~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFS 336 (1491)
+++.| ..+.+||+.||..+.++++. ...-.++..- .+.+++++.. -..|.+|.+..........--.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 45999999999999999865 2222222211 2356666644 4579999987665554333456889999999
Q ss_pred CCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceE
Q 000454 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416 (1491)
Q Consensus 337 Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~I 416 (1491)
|.|. +|+.|+..|.|++|.+.+|.++..+ ..|-..|+|+.|+-||.+|++|+.||.|
T Consensus 91 n~G~---~l~ag~i~g~lYlWelssG~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 91 NLGY---FLLAGTISGNLYLWELSSGILLNVL--------------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred CCce---EEEeecccCcEEEEEeccccHHHHH--------------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 9986 7777779999999999999987766 3488889999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIW 496 (1491)
.+|.+...-.........++..+..|.-.|+.+...+.+. ..+++|+|.|.++++|
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------------------~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------------------NARLYTASEDRTIKLW 203 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------------------cceEEEecCCceEEEE
Confidence 9999865433333335678889999999999999987641 3589999999999999
Q ss_pred ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-----
Q 000454 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----- 571 (1491)
Q Consensus 497 Dl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t----- 571 (1491)
|+..+. +......+..+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 204 dlS~g~------------------------------LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 204 DLSLGV------------------------------LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred Eeccce------------------------------eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 998643 222233556789999999999999999999999988754
Q ss_pred -----------CceEEEEeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCC
Q 000454 572 -----------GSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG 637 (1491)
Q Consensus 572 -----------gkll~tL~gHs~--~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG 637 (1491)
+..+..+.||.+ .|+|++++- ++.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|--
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 234567889998 999999998 88999999999999999999999999998778899999886653
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.3e-21 Score=212.42 Aligned_cols=270 Identities=17% Similarity=0.271 Sum_probs=218.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
....|.+|.|+|.+..|+++++||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc----eEEEeccCceEEEEEecCCc
Confidence 46789999999999999999999999999998886666665 99999999999975 69999999999999999876
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.... +.|...|.|+.+++-...+++|+.|++|++||.+.... ...+ ...
T Consensus 87 ~~~i---------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~---------~~~~-d~~ 135 (323)
T KOG1036|consen 87 EDQI---------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV---------VGTF-DQG 135 (323)
T ss_pred ceee---------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc---------cccc-ccC
Confidence 3322 45889999999999888999999999999999974211 1111 122
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
..|.++.... +.|++|..+..+.+||+++....
T Consensus 136 kkVy~~~v~g----------------------------~~LvVg~~~r~v~iyDLRn~~~~------------------- 168 (323)
T KOG1036|consen 136 KKVYCMDVSG----------------------------NRLVVGTSDRKVLIYDLRNLDEP------------------- 168 (323)
T ss_pred ceEEEEeccC----------------------------CEEEEeecCceEEEEEcccccch-------------------
Confidence 3677777663 58999999999999999973311
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC----ceEEEEeCCCC---------CeEEEEE
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTE---------STYVLDV 590 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg----kll~tL~gHs~---------~VtsLaf 590 (1491)
...+.......+.||++-|++.-+++++-||.|.+=.+... .....|+.|.. +|++|+|
T Consensus 169 --------~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 169 --------FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred --------hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 01112233456899999999999999999999998777655 33446666643 6899999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeC
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD 645 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~ 645 (1491)
|| -...|||||.||.|.+||+.+.+.+..+......|..++|+.||..||+++.
T Consensus 241 hp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99 4667889999999999999999999999877778999999999999999865
No 114
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=6.3e-21 Score=237.28 Aligned_cols=216 Identities=10% Similarity=0.193 Sum_probs=166.3
Q ss_pred CcccccceeEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe--------EEEEEecCCCCeEEEEEcCCC
Q 000454 227 STMVQKMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMETAY--------CLASCRGHEGDITDLAVSSNN 297 (1491)
Q Consensus 227 ~~~v~t~k~v~tL~GH~~~Vt~VaFSpD-G~~LATGS~DGtIrIWDl~Tg~--------~l~tL~gH~~~VtsLafSPDG 297 (1491)
.|...+...+..|.||.+.|.+++|+|+ +.+||||+.||+|+|||+.++. .+..+.+|...|.+|+|+|++
T Consensus 58 L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 58 LENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred eeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 3444455678899999999999999997 8999999999999999997642 345678999999999999998
Q ss_pred CE-EEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 298 AL-VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 298 ~l-LASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
.. ||+++.|++|+|||+.+++.+..+. |...|.+++|+|++. +|++++.|+.|+|||++++..+..+.
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~---lLat~s~D~~IrIwD~Rsg~~i~tl~------- 206 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRKQEIASSFH------- 206 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC---EEEEEecCCEEEEEECCCCcEEEEEe-------
Confidence 75 5789999999999999998877776 667899999999998 89999999999999999987665542
Q ss_pred ccCCCCCCCCCCCCCCcc-----eEEEEECCCCCEEEEecCCc----eEEEEeCCCCCCCCCCCCCceeeee--cCCCCC
Q 000454 377 VAGRNMAPSSSAGPQSHQ-----IFCCAFNANGTVFVTGSSDT----LARVWNACKPNTDDSDQPNHEIDVL--SGHEND 445 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~-----V~slafSPDG~~LasGs~DG----~IrVWDl~t~~~~~s~~~~~~i~~l--~gH~~~ 445 (1491)
.|.+. +....|++++.+|++++.++ .|+|||++.. ...+..+ ..+.+.
T Consensus 207 -------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 207 -------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAP 265 (568)
T ss_pred -------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccc
Confidence 13322 34455678999999887664 7999999742 1222222 222222
Q ss_pred ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC
Q 000454 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
+...-..++ +.++++|+.|++|++|++..
T Consensus 266 L~p~~D~~t--------------------------g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 266 LIPHYDEST--------------------------GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred eEEeeeCCC--------------------------CCEEEEEECCCeEEEEEccC
Confidence 222222222 35789999999999999875
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=3.7e-20 Score=212.99 Aligned_cols=275 Identities=12% Similarity=0.074 Sum_probs=200.7
Q ss_pred CCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEE-EEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~L-aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++. .+ ++++.++.|++||+.+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~---~l~~~~~~~~~v~~~d~~~~~~~~~~~------ 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGK---LLYVCASDSDTIQVIDLATGEVIGTLP------ 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCC---EEEEEECCCCeEEEEECCCCcEEEecc------
Confidence 3578899999999999999999888887654 467899999987 44 667789999999998876544331
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe-cCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
....+..++|+|+++.++++ +.++.|++||+.+. ..+..+.. ...+.+++|+|+
T Consensus 71 ---------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---------~~~~~~~~-~~~~~~~~~~~d 125 (300)
T TIGR03866 71 ---------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETR---------KVLAEIPV-GVEPEGMAVSPD 125 (300)
T ss_pred ---------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC---------eEEeEeeC-CCCcceEEECCC
Confidence 11224578999999877654 56899999999652 23333332 234678999988
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCC-eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG-tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
+ ..+++++.++ .+.+||..+.+..
T Consensus 126 g--------------------------~~l~~~~~~~~~~~~~d~~~~~~~----------------------------- 150 (300)
T TIGR03866 126 G--------------------------KIVVNTSETTNMAHFIDTKTYEIV----------------------------- 150 (300)
T ss_pred C--------------------------CEEEEEecCCCeEEEEeCCCCeEE-----------------------------
Confidence 6 5777777665 4667787653210
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECCCCceEEEEeCCCC-------CeEEEEEecCCCcEEEEEeCCC
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTGHTE-------STYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~tgkll~tL~gHs~-------~VtsLafSPdd~~lLaSgS~DG 605 (1491)
.. ......+.+++|+|+|++|++++ .++.|++||+.+++.+..+..+.. ....++|+|++..++++.+.++
T Consensus 151 ~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 151 DN-VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EE-EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 00 01122346789999999886554 689999999999988877653321 2346889996555555556677
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcccccc
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsg-s~DG~I~IWdl~tG~~~~~~ 663 (1491)
.|.+||+.+++.+..+. +...+.+++|+|+|++|+++ ..+|.|.|||+.+++.+...
T Consensus 230 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred eEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 89999999998877664 34578899999999999886 46899999999998765544
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=2.7e-21 Score=212.38 Aligned_cols=296 Identities=15% Similarity=0.154 Sum_probs=215.8
Q ss_pred CCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC------CCCCC---CCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK------PNTDD---SDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 389 ~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t------~~~~~---s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
..|...+.+.+|++||.++|+|+.|..|+|+|+.. ..... ..+....++++..|...|+++.|+|..
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre---- 184 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE---- 184 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh----
Confidence 34788899999999999999999999999999862 11111 112235678899999999999999974
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
..|++|+.|++|++||+.... ..........
T Consensus 185 ----------------------~ILiS~srD~tvKlFDfsK~s---------------------------aKrA~K~~qd 215 (430)
T KOG0640|consen 185 ----------------------TILISGSRDNTVKLFDFSKTS---------------------------AKRAFKVFQD 215 (430)
T ss_pred ----------------------heEEeccCCCeEEEEecccHH---------------------------HHHHHHHhhc
Confidence 689999999999999987522 0111223345
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE---eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL---~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
...|.++.|+|.|.+|++|....++++||+.+.++...- .+|++.|+++.+++ .+.+.+||+.||.|+|||--+++
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHH
Confidence 567999999999999999999999999999998887644 47999999999999 77888899999999999999999
Q ss_pred eEEEEeeCC--cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccce-----eeecCCCcceEEccCCCEEEc-c
Q 000454 617 PIRIYEISR--FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD-----QFFLGDYRPLVQDTYGNVLDQ-E 688 (1491)
Q Consensus 617 ~l~~l~~h~--~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~-----~~fs~D~r~La~d~~G~vLde-~ 688 (1491)
|+.++...+ ..|.+..|..+|+||++.+.|..|++|.+.+|..+...... +.+.. ..+.-....+||.- +
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt--qAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT--QAVFNHTEDYVLFPDE 372 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhh--hhhhcCccceEEcccc
Confidence 999986433 36889999999999999999999999999999876543211 11100 00011122222211 0
Q ss_pred ccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEecc
Q 000454 689 TQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 753 (1491)
Q Consensus 689 tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~ 753 (1491)
.....-.|+-.+.. ...-+.-++.-.+.-+.-||.+.-++++ +.|...++|-
T Consensus 373 as~slcsWdaRtad----------r~~l~slgHn~a~R~i~HSP~~p~FmTc---sdD~raRFWy 424 (430)
T KOG0640|consen 373 ASNSLCSWDARTAD----------RVALLSLGHNGAVRWIVHSPVEPAFMTC---SDDFRARFWY 424 (430)
T ss_pred ccCceeeccccchh----------hhhhcccCCCCCceEEEeCCCCCceeee---cccceeeeee
Confidence 00000123321111 0111112344455668899999999999 9999999994
No 117
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=2e-20 Score=213.53 Aligned_cols=282 Identities=15% Similarity=0.187 Sum_probs=237.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCc
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~ 364 (1491)
...|+++...|....+++|+.|..+.++|..+++.+..+.||...|+.+.|+|+.. .+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~---~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD---TVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh---heeecCCcceEEeeccccccC
Confidence 34678888888777999999999999999999999999999999999999999987 899999999999999876553
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC--C
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG--H 442 (1491)
Q Consensus 365 ~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g--H 442 (1491)
... ...|...|+.+..+|.|.||++++.|++..+.|++++ ..+..... .
T Consensus 296 ~~~--------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g---------~~lt~vs~~~s 346 (506)
T KOG0289|consen 296 PTS--------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG---------SQLTVVSDETS 346 (506)
T ss_pred ccc--------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCC---------cEEEEEeeccc
Confidence 322 2458899999999999999999999999999999764 33333332 2
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
.-.+++.+|+|+| -.|.+|..||.++|||+.++.
T Consensus 347 ~v~~ts~~fHpDg--------------------------Lifgtgt~d~~vkiwdlks~~-------------------- 380 (506)
T KOG0289|consen 347 DVEYTSAAFHPDG--------------------------LIFGTGTPDGVVKIWDLKSQT-------------------- 380 (506)
T ss_pred cceeEEeeEcCCc--------------------------eEEeccCCCceEEEEEcCCcc--------------------
Confidence 3358999999997 489999999999999998632
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs-~~VtsLafSPdd~~lLaSg 601 (1491)
....+.+|.++|..|+|+.+|-|||+++.|+.|++||++.-+...++.-.. ..|.++.|.+ .+.+|+.+
T Consensus 381 ---------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~ 450 (506)
T KOG0289|consen 381 ---------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIA 450 (506)
T ss_pred ---------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEee
Confidence 345567899999999999999999999999999999999888777775433 3689999998 67788888
Q ss_pred eCCCcEEEEeCC--CCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 602 GYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 602 S~DGtIrIWDl~--tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
|.|=+|++++-. ...++..+..|.+..+.+.|...-++|++++.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 887677776633 56788888888888999999999999999999998888764
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=6.4e-21 Score=220.10 Aligned_cols=263 Identities=24% Similarity=0.362 Sum_probs=209.2
Q ss_pred cCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC----------eEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCe
Q 000454 241 GHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETA----------YCLASCRGHEGDITDLAVSSNN-ALVASASNDCI 308 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG-~~LATGS~DGtIrIWDl~Tg----------~~l~tL~gH~~~VtsLafSPDG-~lLASGS~DGt 308 (1491)
-|.+.|+.+.+-|.. .+|||++..+.|.|||..+- .+-.+|.||...-+.|+|++.. -.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 499999999999955 56778888999999998642 1223788999988899999954 48999999999
Q ss_pred EEEEECCCC-------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCC
Q 000454 309 IRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1491)
Q Consensus 309 IrVWDl~tg-------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~ 381 (1491)
|++||+... .+...+.+|...|..++|++... .+|++++.|+.+.|||++++...
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~--~lF~sv~dd~~L~iwD~R~~~~~---------------- 263 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE--DLFGSVGDDGKLMIWDTRSNTSK---------------- 263 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccch--hhheeecCCCeEEEEEcCCCCCC----------------
Confidence 999999643 24567889999999999999865 38999999999999999963111
Q ss_pred CCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 382 MAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 382 ~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
+......|...|.|++|+| ++.+||+|+.|++|++||++.. ..++..+.+|...|..|.|+|.-
T Consensus 264 --~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~----- 328 (422)
T KOG0264|consen 264 --PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHN----- 328 (422)
T ss_pred --CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCC-----
Confidence 1122355899999999999 5678899999999999999864 34788999999999999999975
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
...|++++.|+.+.+||+..-...
T Consensus 329 --------------------etvLASSg~D~rl~vWDls~ig~e------------------------------------ 352 (422)
T KOG0264|consen 329 --------------------ETVLASSGTDRRLNVWDLSRIGEE------------------------------------ 352 (422)
T ss_pred --------------------CceeEecccCCcEEEEeccccccc------------------------------------
Confidence 468999999999999998741100
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
. +++. ..|| -.+++..-.||...|..+.|+|..+..++|++.|+.+.||.+.
T Consensus 353 q-------~~ed------a~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 Q-------SPED------AEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred c-------Chhh------hccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0 0000 0111 1344555678999999999999999999999999999999985
No 119
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=7.4e-20 Score=214.56 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=121.6
Q ss_pred eeEEEEcC-CCCEEEEEeccceEEEEECCCC-------ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 543 VNMIVWSL-DNRFVLAAIMDCRICVWNAADG-------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 543 VtsVafSP-DG~~LaSGs~DG~IrIWDl~tg-------kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
|+.+.|.| |...||+++.||.|+||.+..+ .+-..+.+|...|+.|.|||....+|+++++|-+|+|||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 56667776 5568999999999999998764 345678899999999999998889999999999999999999
Q ss_pred CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc--------cccccceeeecCCCcceEEccCCCEE
Q 000454 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES--------QKDAKYDQFFLGDYRPLVQDTYGNVL 685 (1491)
Q Consensus 615 Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~--------~~~~~~~~~fs~D~r~La~d~~G~vL 685 (1491)
++....+.+|.+.|.+++|||||+.+|+.+.||+|+||....++. ....-..+.|.-|++.++......+-
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 999999999999999999999999999999999999999987764 11223456788888888776665543
No 120
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.4e-19 Score=201.42 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=207.2
Q ss_pred CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 317 gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
.++.+.+....+.|.+|.|+++|. +|++++.|.+|+|||...++++..+.. +...+.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~---~litss~dDsl~LYd~~~g~~~~ti~s--------------------kkyG~~ 60 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGL---LLITSSEDDSLRLYDSLSGKQVKTINS--------------------KKYGVD 60 (311)
T ss_pred cccccccccCCCceeEEEecCCCC---EEEEecCCCeEEEEEcCCCceeeEeec--------------------cccccc
Confidence 345566666678999999999998 899999999999999999998888743 455678
Q ss_pred EEEECCCCCEEEEecC--CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 397 CCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 397 slafSPDG~~LasGs~--DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
.++|....+.++.++. |.+|+..++.+ .+.++.+.||...|..|..+|..
T Consensus 61 ~~~Fth~~~~~i~sStk~d~tIryLsl~d---------NkylRYF~GH~~~V~sL~~sP~~------------------- 112 (311)
T KOG1446|consen 61 LACFTHHSNTVIHSSTKEDDTIRYLSLHD---------NKYLRYFPGHKKRVNSLSVSPKD------------------- 112 (311)
T ss_pred EEEEecCCceEEEccCCCCCceEEEEeec---------CceEEEcCCCCceEEEEEecCCC-------------------
Confidence 8888877777777776 88999999966 67899999999999999999974
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
+.|++++.|++|++||++..+..+.. +...-..+||.|.|-+
T Consensus 113 -------d~FlS~S~D~tvrLWDlR~~~cqg~l-------------------------------~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 113 -------DTFLSSSLDKTVRLWDLRVKKCQGLL-------------------------------NLSGRPIAAFDPEGLI 154 (311)
T ss_pred -------CeEEecccCCeEEeeEecCCCCceEE-------------------------------ecCCCcceeECCCCcE
Confidence 79999999999999999964422111 1112234899999999
Q ss_pred EEEEeccceEEEEECCCC--ceEEEEe---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcce-
Q 000454 555 VLAAIMDCRICVWNAADG--SLVHSLT---GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL- 628 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~tg--kll~tL~---gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~V- 628 (1491)
+|++.....|++||++.- .+..++. +.....+.|.|+| ++++++.+...+.+.+.|.-+|..+..+..+...-
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 999988889999999763 3444443 3456789999999 55666667788999999999999999998765532
Q ss_pred --EEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 629 --VDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 629 --tslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
...+|+|||+++++|+.||+|.+|++.+|+...
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 578999999999999999999999999997644
No 121
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=5.6e-18 Score=197.74 Aligned_cols=333 Identities=26% Similarity=0.502 Sum_probs=259.6
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCC-CeEEEEE-cCCCC-EEEEEEC-CCeEEE
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEG-DITDLAV-SSNNA-LVASASN-DCIIRV 311 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~-~l~tL~gH~~-~VtsLaf-SPDG~-lLASGS~-DGtIrV 311 (1491)
..+.+|...|.++.|.+.+..++.++.|+.|.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3677899999999999999999999999999999999887 7777776443 7888888 88887 5555445 899999
Q ss_pred EECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 312 WRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 312 WDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|++.. ......+..|...|..++|+|++. .+++++. ++.+++|++..+.....+ .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 195 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTL--------------------A 195 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEee--------------------c
Confidence 99988 788888999999999999999987 7777775 999999999875544443 2
Q ss_pred CCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceee-eecCCCCCceEEEEccCccccccccccCCC
Q 000454 390 PQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.|...|.+++|+|++. .+++++.|+.|++|+... ...+. .+.+|...+ ...|++++
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~-~~~~~~~~------------ 253 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---------GKLLRSTLSGHSDSV-VSSFSPDG------------ 253 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---------CcEEeeecCCCCcce-eEeECCCC------------
Confidence 2778899999999998 555558999999997753 33444 577787775 44777764
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
..+++++.|+.+++|++..... .......|...|.++.
T Consensus 254 --------------~~~~~~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 254 --------------SLLASGSSDGTIRLWDLRSSSS----------------------------LLRTLSGHSSSVLSVA 291 (466)
T ss_pred --------------CEEEEecCCCcEEEeeecCCCc----------------------------EEEEEecCCccEEEEE
Confidence 4788999999999999885331 0111145677899999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEe--CCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~--gHs~~VtsLafSPdd-~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
|.|++..+++++.|+.+.+|++.+........ .|...+..+.| +.+ ..++.++..|+.+.+|++.......... .
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~ 369 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-G 369 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEec-C
Confidence 99999999999999899999999888777776 88888999999 533 3444444688999999998887333333 2
Q ss_pred CcceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCcc
Q 000454 625 RFRLVDGKFSPDGASIIL-SDDVGQLYILNTGQGES 659 (1491)
Q Consensus 625 ~~~VtslafSPDG~~LAs-gs~DG~I~IWdl~tG~~ 659 (1491)
...+..+.|++ ...++. +..++.+.+|+......
T Consensus 370 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 370 HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CceEEEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 22388899999 544444 68889999999866543
No 122
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=212.59 Aligned_cols=279 Identities=15% Similarity=0.256 Sum_probs=217.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeec
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 324 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~ 324 (1491)
.|+.++|-|||..|+.+.. ..+.|||...|.++.++++|...|.|++|+.||+.+|+|+.|..|.||+-.-.- +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-
Confidence 8999999999999888754 469999999999999999999999999999999999999999999999853211 2222
Q ss_pred cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000454 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1491)
Q Consensus 325 gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG 404 (1491)
.|...|.|+.|.|-.. .|++++-. ..-+|........... ....+.+++|..||
T Consensus 91 SH~D~IQCMsFNP~~h---~LasCsLs-dFglWS~~qK~V~K~k----------------------ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH---QLASCSLS-DFGLWSPEQKSVSKHK----------------------SSSRIICCSWTNDG 144 (1081)
T ss_pred ccCCeeeEeecCchHH---Hhhhcchh-hccccChhhhhHHhhh----------------------hheeEEEeeecCCC
Confidence 5999999999999876 78887754 3678877654332221 34568999999999
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
.+|+.|-.+|+|.|-+... .+...+..-.+...+|.+|+|+|.... ...+.+
T Consensus 145 qylalG~~nGTIsiRNk~g-------Eek~~I~Rpgg~Nspiwsi~~~p~sg~---------------------G~~di~ 196 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKNG-------EEKVKIERPGGSNSPIWSICWNPSSGE---------------------GRNDIL 196 (1081)
T ss_pred cEEEEeccCceEEeecCCC-------CcceEEeCCCCCCCCceEEEecCCCCC---------------------CccceE
Confidence 9999999999999986532 223344445567889999999987411 113577
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceE
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1491)
++.....++.++.+.... +.....-.-...|+.+.++|.+++.|+.|+.+
T Consensus 197 aV~DW~qTLSFy~LsG~~------------------------------Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQ------------------------------IGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred EEEeccceeEEEEeccee------------------------------ecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 888888888888665311 11111122345688999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 565 rIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.+|.. .|-.+.++......|+.++.+| ++..++.|+.||+|..|++
T Consensus 247 ~~fTR-~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 247 SLFTR-DGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEee-cCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 99974 5777888877888999999999 7788888999999988853
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3e-20 Score=204.97 Aligned_cols=291 Identities=19% Similarity=0.301 Sum_probs=215.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeecc
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~g 325 (1491)
..|+.|++-|.+||.|+.||.|.|||+.|...-+.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 326 Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
...+|+.+.|+|...+ .++++-.+..-.+-++..+. ..+ ++.. ..........+..|.+.|+
T Consensus 105 f~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~--h~~-Lp~d-------------~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPK--HSV-LPKD-------------DDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ccCccceeeeccccCC--eEEEEEecCCcEEEEecCCc--eee-ccCC-------------CccccccccccccccCCCC
Confidence 7789999999998753 34444334334444443321 111 1100 0111122233447899999
Q ss_pred EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC-CCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
+|++|...|.+.||+..+. ..+..++-.. ..|..+.++-.+ ..|
T Consensus 167 yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g--------------------------~~l 211 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG--------------------------RFL 211 (405)
T ss_pred EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC--------------------------cEE
Confidence 9999999999999999763 3444444333 567778777664 689
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc--CCCCCeeEEEEcCCCCEEEEEec-c
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL--PTPRGVNMIVWSLDNRFVLAAIM-D 561 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~--~h~~~VtsVafSPDG~~LaSGs~-D 561 (1491)
+.-+.|..|+.|++..--..+... ...+...+. .....-.+++||.+|.|+++|+. -
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~--------------------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a 271 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDG--------------------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA 271 (405)
T ss_pred EEecCCceEEEEehhhhcccCccC--------------------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence 999999999999887311000000 001111111 12223467899999999988763 4
Q ss_pred ceEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 562 CRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs-~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..++||....|.+++.|.|.. .....+.|+| -.-++++- ..|.|+||..
T Consensus 272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence 579999999999999999988 4677899999 44455555 6889999987
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=4.7e-20 Score=201.76 Aligned_cols=303 Identities=21% Similarity=0.313 Sum_probs=231.8
Q ss_pred EEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-------E---EEE-----EecCCCCeEEEEEcC-CCCEE
Q 000454 238 RVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETAY-------C---LAS-----CRGHEGDITDLAVSS-NNALV 300 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~Tg~-------~---l~t-----L~gH~~~VtsLafSP-DG~lL 300 (1491)
..+-|.+.|+++.+.+ .|+|+++|+.||.|.|||++... . +.. -.+|.-.|.++.|-| |..++
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999999 58999999999999999997543 1 111 126888999999999 66688
Q ss_pred EEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 301 ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
.+++.|.+++|||..+-+....|. ..+.|++-+++|-.....++++|..+-.|++-|+..|.+...+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L------------ 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL------------ 184 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee------------
Confidence 999999999999999988877776 6788999999998765668888889999999999999876655
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.+|...|.++.|+|... .|++|+.||.|++||++.. ..++..+..|..
T Consensus 185 --------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra--------sgcf~~lD~hn~--------------- 233 (397)
T KOG4283|consen 185 --------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA--------SGCFRVLDQHNT--------------- 233 (397)
T ss_pred --------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------cceeEEeecccC---------------
Confidence 56899999999999776 4688999999999999642 112222222221
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
+. ....+.-..|
T Consensus 234 ------------------------------------------k~--------------------------~p~~~~n~ah 245 (397)
T KOG4283|consen 234 ------------------------------------------KR--------------------------PPILKTNTAH 245 (397)
T ss_pred ------------------------------------------cc--------------------------Cccccccccc
Confidence 00 0011123457
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe---CCCCCeEEEEE---ecCCCcEEEEEeCCCcEEEEeCC
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT---GHTESTYVLDV---HPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~---gHs~~VtsLaf---SPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.+.|+.+||+.+|.++++.+.|..+++|+..+|+....-. .|... ..+++ +- +...++---.++.+.++.+-
T Consensus 246 ~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~-~s~vfv~~p~~~~lall~~~ 323 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSM-DSDVFVLFPNDGSLALLNLL 323 (397)
T ss_pred cceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-ccceEEEeec-ccceEEEEecCCeEEEEEcc
Confidence 7889999999999999999999999999998875422111 11111 11111 11 22333334456899999999
Q ss_pred CCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+|..++.+.+|-..|.+.+|-|+-+.+.+|+.|+.|..|-.
T Consensus 324 sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 324 EGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 99999999999778999999999999999999999999987
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5e-21 Score=220.92 Aligned_cols=245 Identities=19% Similarity=0.299 Sum_probs=202.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------ 315 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~------ 315 (1491)
-.++|.|++-+|+|.+|+.|...|.|++|.+.+|.++..+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ---CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 316 ---DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 316 ---tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
+.+++..|..|+-+|+++...+.+.+ .+|++++.|.++++||+..+.++..+.+ .
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~-~rl~TaS~D~t~k~wdlS~g~LLlti~f---------------------p 217 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTN-ARLYTASEDRTIKLWDLSLGVLLLTITF---------------------P 217 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCcc-ceEEEecCCceEEEEEeccceeeEEEec---------------------C
Confidence 34778899999999999999877533 3899999999999999999988887754 4
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..+.+++.+|-+..+++|+.+|.|.+.++... .+....|..-.+++.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~---------------~~~~~~v~~k~~~~~------------------ 264 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL---------------SGQSAGVNQKGRHEE------------------ 264 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcC---------------Ccccccccccccccc------------------
Confidence 56899999999999999999999999887431 111111110001110
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSL 550 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSP 550 (1491)
+.....+.+|.. .|+|++++-
T Consensus 265 ---------------------------------------------------------~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 265 ---------------------------------------------------------NTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ---------------------------------------------------------cceeeeeccccCCcceeEEEEec
Confidence 112223445555 899999999
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lL 598 (1491)
||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.-...+
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 999999999999999999999999999987888999999977544443
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.5e-20 Score=218.93 Aligned_cols=319 Identities=16% Similarity=0.217 Sum_probs=233.4
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRV 311 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~--lLASGS~DGtIrV 311 (1491)
.+...++||++.|.||..+|.|.+||+|++||+|+||.+.||+|+.++. ..+.|.||+|+|.+. .||++- ...+.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 3456788999999999999999999999999999999999999999987 466899999999765 455544 444667
Q ss_pred EECCCCCceeeeccCCCceEEEEecCCCCceEEEEEE----eCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 312 WDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg----S~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
-+..-|..+....+ . . .|+++ ..++.+..|.-........- ...
T Consensus 469 vnp~~G~~~e~~~t--~-----------e---ll~~~~~~~~p~~~~~~W~~~~~~e~~~~----------------v~~ 516 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPT--K-----------E---LLASAPNESEPDAAVVTWSRASLDELEKG----------------VCI 516 (733)
T ss_pred eCccccchhhhcch--h-----------h---hhhcCCCccCCcccceeechhhhhhhccc----------------eEE
Confidence 66544422211110 0 0 11111 23456777754321111100 000
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCC---ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSD---TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~D---G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
.-.+...|..+.|+..|.+|++...+ ..|.|+++.... ....+....+.|.++.|+|..
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~---------sQ~PF~kskG~vq~v~FHPs~--------- 578 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK---------SQSPFRKSKGLVQRVKFHPSK--------- 578 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc---------ccCchhhcCCceeEEEecCCC---------
Confidence 11267789999999999999987654 468899886532 223444556789999999874
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
.+|++++ ...|+|||+.... .+..+......|.
T Consensus 579 -----------------p~lfVaT-q~~vRiYdL~kqe-----------------------------lvKkL~tg~kwiS 611 (733)
T KOG0650|consen 579 -----------------PYLFVAT-QRSVRIYDLSKQE-----------------------------LVKKLLTGSKWIS 611 (733)
T ss_pred -----------------ceEEEEe-ccceEEEehhHHH-----------------------------HHHHHhcCCeeee
Confidence 3455444 4679999987522 2334455667899
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC------CCC--
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI------WEG-- 615 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl------~tG-- 615 (1491)
.++++|.|..|++|+.|+.++.||+.-. ++.+++.-|...|+.|+||+ .--++++|+.||++.|+-- ...
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 9999999999999999999999999754 67788999999999999998 5568889999999999842 111
Q ss_pred -ceEEEEeeCCc----ceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 616 -IPIRIYEISRF----RLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 616 -k~l~~l~~h~~----~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
-++..+.+|.. .|.++.|+|...+|++++.||+|++|
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 35566666644 58899999999999999999999998
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.2e-20 Score=202.31 Aligned_cols=282 Identities=16% Similarity=0.216 Sum_probs=213.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
....|..|.|+|.+..|+.++.||++++|++....+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 35789999999999999999999999999999886666665 899999999997 4578999999999999998887654
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
+..|...|.||.+++... .+++|+.|++|++||.+.......+ .....|.|+..+
T Consensus 90 -igth~~~i~ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~---------------------d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVG---CVISGSWDKTIKFWDPRNKVVVGTF---------------------DQGKKVYCMDVS 144 (323)
T ss_pred -eccCCCceEEEEeeccCC---eEEEcccCccEEEEecccccccccc---------------------ccCceEEEEecc
Confidence 455999999999998766 8999999999999999874433332 133468888765
Q ss_pred CCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
|..|++|+.+..|.+||+++..... ...-..-.-.+.+|++.|++
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~-------------------------- 189 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG-------------------------- 189 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC--------------------------
Confidence 7789999999999999998743221 11112334467888888864
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1491)
.-+++++.||.|.+=.+...... . ...+.++.... ...-...-.+|++|+|+|--..||||+.|
T Consensus 190 eGy~~sSieGRVavE~~d~s~~~-~----skkyaFkCHr~-----------~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 190 EGYVVSSIEGRVAVEYFDDSEEA-Q----SKKYAFKCHRL-----------SEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred CceEEEeecceEEEEccCCchHH-h----hhceeEEeeec-----------ccCCceEEEEeceeEeccccceEEecCCC
Confidence 57899999999998666543100 0 00011100000 00000112469999999999999999999
Q ss_pred ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000454 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
|.|.+||+.+.+.+..|......|..++|+- ++.+||.|+
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred ceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 9999999999999999988878899999998 556666665
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.6e-20 Score=201.16 Aligned_cols=308 Identities=15% Similarity=0.168 Sum_probs=217.5
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-----ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk-----~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGt 353 (1491)
..|++|...|++++|+.||++||+++.|+.|+||++.+.. +++.- -.-+.-+.++|.||... .++++-...+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s--~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKS--VVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcce--EEEEEccCCE
Confidence 3678999999999999999999999999999999997642 11111 11235678999999873 5666667778
Q ss_pred EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 354 VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
+++|-+...+-- ...+ . ............|...|..+-...++.+|++++.|..|.+|++. +
T Consensus 157 l~vyk~~K~~dG-~~~~----~---~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk----------G 218 (420)
T KOG2096|consen 157 LCVYKLVKKTDG-SGSH----H---FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK----------G 218 (420)
T ss_pred EEEEEeeecccC-CCCc----c---cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC----------C
Confidence 999976532210 0000 0 00000011223456667777777889999999999999999996 3
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
+.+..+......-+..+.+|+| ..+++++.--.+++|.+--.+. +.+
T Consensus 219 q~L~~idtnq~~n~~aavSP~G--------------------------RFia~~gFTpDVkVwE~~f~kd----G~f--- 265 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDG--------------------------RFIAVSGFTPDVKVWEPIFTKD----GTF--- 265 (420)
T ss_pred ceeeeeccccccccceeeCCCC--------------------------cEEEEecCCCCceEEEEEeccC----cch---
Confidence 4455555555556677889987 6888898889999997653220 000
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-------CceEEEE----eCCC
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GSLVHSL----TGHT 582 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-------gkll~tL----~gHs 582 (1491)
........+.+|...|..+|||++.+.+++.+.||+++|||+.- .+.+.+. ..-.
T Consensus 266 --------------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag 331 (420)
T KOG2096|consen 266 --------------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG 331 (420)
T ss_pred --------------hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC
Confidence 11133456788999999999999999999999999999999842 2222222 1122
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.-..++.+| .+..|| .+....|+++..++|+....+. .|...|.+++|++||+++|++++ ..++++.-..|
T Consensus 332 ~~p~RL~lsP-~g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ntpg 404 (420)
T KOG2096|consen 332 SEPVRLELSP-SGDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRNTPG 404 (420)
T ss_pred CCceEEEeCC-CCcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecCCCc
Confidence 3334899999 556654 4445679999999998877775 46778999999999999999876 67777764333
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=3.7e-20 Score=219.33 Aligned_cols=312 Identities=18% Similarity=0.247 Sum_probs=216.6
Q ss_pred EEEEcC---CCCEEEEEeCCCeEEEEECCCCeE------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 248 CAIFDR---SGRYVITGSDDRLVKIWSMETAYC------LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 248 ~VaFSp---DG~~LATGS~DGtIrIWDl~Tg~~------l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
++.|++ ....||.+.+||.|.++|...... +..+..|.+.|.++.|-|....|++++.|.+|++||+.+..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356665 346899999999999999865432 34556899999999999976799999999999999999998
Q ss_pred ceee--eccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccc--e----eecCCCCC-cccCCCCCCCCCCC
Q 000454 319 PISV--LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP--R----IYIPRPSD-AVAGRNMAPSSSAG 389 (1491)
Q Consensus 319 ~i~~--L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~--~----i~~~~~~~-~~~g~~~~~~~s~~ 389 (1491)
++.. +.+|.+.|.+++|.|.+. ..|++|+.||.|.|||++...... . ++...... ..............
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 8776 889999999999999976 489999999999999998554111 0 00000000 00000000011122
Q ss_pred CCCcceEE---EEECCCCCEEEEecC-CceEEEEeCCCCCCCCCCCCCceeeeecCC---CCCceEEEEccCcccccccc
Q 000454 390 PQSHQIFC---CAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH---ENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 390 ~h~~~V~s---lafSPDG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH---~~~V~sVafSpdg~as~~s~ 462 (1491)
.+...|.. +.+..|...||+++. |+.|+|||+++.......++.. ...+..| ...+.++.....|
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~nL~lDssG------- 283 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVNLILDSSG------- 283 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEEEEecCCC-------
Confidence 33444444 555578888888777 9999999999876554444322 2222333 2234444444333
Q ss_pred ccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC-
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR- 541 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~- 541 (1491)
.+|++.+.|+.|++|++.+... .+...+.++..
T Consensus 284 -------------------t~L~AsCtD~sIy~ynm~s~s~---------------------------sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 284 -------------------TYLFASCTDNSIYFYNMRSLSI---------------------------SPVAEFSGKLNS 317 (720)
T ss_pred -------------------CeEEEEecCCcEEEEeccccCc---------------------------CchhhccCcccc
Confidence 4566556699999999986331 11111222211
Q ss_pred -CeeEEEEcCCCCEEEEEeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 542 -GVNMIVWSLDNRFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 542 -~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
-...-..+||+.+|++|+.|...++|.+.+.+ ....+.||.-.|++++|.|..-.-++|++.|.+++||++..+
T Consensus 318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 12233578999999999999999999998765 456778999999999999966667778899999999999654
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.3e-20 Score=227.27 Aligned_cols=287 Identities=18% Similarity=0.299 Sum_probs=225.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecC---CCCeEEEEEcC-CCCEEEEEECCCeEEEEECC
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCRGH---EGDITDLAVSS-NNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg----~~l~tL~gH---~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~ 315 (1491)
....+|+..++-..|+.++. ..++|+.+... .+...+++. .-.+.+|.|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34567777898888888875 46788876532 222222221 12355677875 56799999999999999998
Q ss_pred C---CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 316 D---GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 316 t---gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
. .+.+..|..|...|+++.|++... ++|++|+.||+|++||++...-..++ .+..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~--------------------~~nS 176 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTF--------------------RSNS 176 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccc--------------------cccc
Confidence 7 567778999999999999999865 59999999999999999987765554 2356
Q ss_pred cceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 393 HQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 393 ~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
..|..+.|+| .+..|+++...|.+++||++. +.+....+.+|.+.|.++.|+|+.
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq--------p~r~~~k~~AH~GpV~c~nwhPnr---------------- 232 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ--------PDRCEKKLTAHNGPVLCLNWHPNR---------------- 232 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccC--------chhHHHHhhcccCceEEEeecCCC----------------
Confidence 7799999999 578999999999999999984 466788899999999999999975
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
.+|+||+.|+.|+|||+.+.+.. .........+|.+|.|-|.
T Consensus 233 ----------~~lATGGRDK~vkiWd~t~~~~~----------------------------~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 233 ----------EWLATGGRDKMVKIWDMTDSRAK----------------------------PKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ----------ceeeecCCCccEEEEeccCCCcc----------------------------ceeEEeecceeeeeeeccC
Confidence 69999999999999999864311 1122344567999999998
Q ss_pred CCE-EEEEe--ccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 552 NRF-VLAAI--MDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 552 G~~-LaSGs--~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
..+ ||+++ .|-.|+|||++.. -+.+++..|...++.++|-..+..++.+++.||+|..-.+.++
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 876 44443 4778999999764 4567889999999999997766788999999998876655544
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=201.04 Aligned_cols=264 Identities=15% Similarity=0.200 Sum_probs=212.1
Q ss_pred EEEEECCCeEEEEECCC------------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 300 VASASNDCIIRVWRLPD------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 300 LASGS~DGtIrVWDl~t------------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
|++|+....|.-+++.- -.++..+..|.+.|++++.+-- ++++|+.|-+|+|||+.....+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~-----~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGP-----YVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecce-----eEeccCCCCcEEEEeccchhhhcc
Confidence 56666666555555421 1235667889999999999753 899999999999999998776665
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC--EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND 445 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~ 445 (1491)
+ ..|.+.|+++.|.++-. .|++|+.||.|.+|+... +..+..+.+|.+.
T Consensus 79 l--------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 79 L--------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------WELLKSLKAHKGQ 129 (362)
T ss_pred e--------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------eEEeeeecccccc
Confidence 5 34788999999999765 899999999999999964 7889999999999
Q ss_pred ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000454 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1491)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~ 525 (1491)
|+.++++|.+ ..-++.+.|+.+++|++-.++....
T Consensus 130 Vt~lsiHPS~--------------------------KLALsVg~D~~lr~WNLV~Gr~a~v------------------- 164 (362)
T KOG0294|consen 130 VTDLSIHPSG--------------------------KLALSVGGDQVLRTWNLVRGRVAFV------------------- 164 (362)
T ss_pred cceeEecCCC--------------------------ceEEEEcCCceeeeehhhcCcccee-------------------
Confidence 9999999986 5778899999999999987552111
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
..-....+.|.|+|.|.+++++..+ .|-||.+.+..+...+... ..+.++.|- ++..|++|+.|+
T Consensus 165 -----------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 165 -----------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNE 229 (362)
T ss_pred -----------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCc
Confidence 1111123448999999998888766 6899999887776665533 445666664 567788999999
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEE--cCCCCEEEEEeCCCcEEEEECCCC
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKF--SPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~Vtslaf--SPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.|.+||..++.++..+.+|...|-++.+ .|++.+|++++.||.|+|||+...
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999999999999999999999874 578999999999999999998654
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=2.7e-20 Score=214.30 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=232.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---Cceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW 357 (1491)
.|..-|.++++|...+++.||+. |.|+|||+... .++..+.. ....|.++.+.||+. .|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeeee
Confidence 48888999999999999999875 67999999643 34444442 357899999999998 89999999999999
Q ss_pred ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 358 Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
|+..........+ ....-..+.++.+||.++.++++.||.|.|||+.. ...++
T Consensus 493 DLAapTprikael------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhn---------q~~Vr 545 (705)
T KOG0639|consen 493 DLAAPTPRIKAEL------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN---------QTLVR 545 (705)
T ss_pred eccCCCcchhhhc------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---------ceeee
Confidence 9986543222211 11223467789999999999999999999999975 56788
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+.+|.+.+.||.++++| ..|.||+-|.+|+.||++.++...
T Consensus 546 qfqGhtDGascIdis~dG--------------------------tklWTGGlDntvRcWDlregrqlq------------ 587 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDG--------------------------TKLWTGGLDNTVRCWDLREGRQLQ------------ 587 (705)
T ss_pred cccCCCCCceeEEecCCC--------------------------ceeecCCCccceeehhhhhhhhhh------------
Confidence 999999999999999987 589999999999999999754211
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~l 597 (1491)
.......|.++.++|.+.+|++|-.++.+.|.... +.....+.-|..-|.++.|.+ .+++
T Consensus 588 ------------------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkw 647 (705)
T KOG0639|consen 588 ------------------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKW 647 (705)
T ss_pred ------------------hhhhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCce
Confidence 11234568899999999999999999999988864 555667778999999999999 7788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 598 LaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+++.|.|..+..|...-|..+.... ....|.++.+|-|.++|++|+.|..-.||.+
T Consensus 648 fvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 8899999999999999998887776 5668999999999999999999988888865
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.6e-20 Score=201.51 Aligned_cols=264 Identities=19% Similarity=0.250 Sum_probs=205.6
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---CceeeeccCCCceEEEEecC--CCCceEEEEEEeCCCcEEE
Q 000454 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSP--RPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 282 ~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~gHs~~VtsLaFSP--dg~s~~~LaSgS~DGtVrI 356 (1491)
..|...|.++...-.|+.|||++.|++|+|+.++.. .++..|.||.++|+.++|.. .|. +|++++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~---iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT---ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc---EeeEeecCceEEE
Confidence 468999999988889999999999999999999764 46788999999999999975 455 9999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC--CCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD--G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
|.-.+++..+.. ....|...|++++|.|. |-.|++++.||.|.|.+.+... ...
T Consensus 85 Wke~~g~w~k~~------------------e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------~w~ 140 (299)
T KOG1332|consen 85 WKEENGRWTKAY------------------EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------GWT 140 (299)
T ss_pred EecCCCchhhhh------------------hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------Ccc
Confidence 998887654433 22458889999999996 5789999999999999986521 123
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.......|.-.|++++|.|... .|.+.
T Consensus 141 t~ki~~aH~~GvnsVswapa~~---------------------------------~g~~~-------------------- 167 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASA---------------------------------PGSLV-------------------- 167 (299)
T ss_pred chhhhhccccccceeeecCcCC---------------------------------Ccccc--------------------
Confidence 3445678999999999998631 00000
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc--eEEEEeCCCCCeEEEEEec
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk--ll~tL~gHs~~VtsLafSP 592 (1491)
.+.. . ..-+.|++|+.|..|+||...+++ +-++|.+|.+.|..++|.|
T Consensus 168 -----------------------~~~~-~------~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 168 -----------------------DQGP-A------AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred -----------------------ccCc-c------cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 0000 0 002568888899999999887753 3456899999999999999
Q ss_pred CCC---cEEEEEeCCCcEEEEeCCCC---ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 593 FNP---RIAMSAGYDGKTIVWDIWEG---IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 593 dd~---~lLaSgS~DGtIrIWDl~tG---k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
.-+ ..||+|+.||+|.||..... -....+......++.+.||+.|..|++++.|..|.+|.-.
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 643 58999999999999987522 1222333345689999999999999999999999999853
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=4.9e-20 Score=212.82 Aligned_cols=265 Identities=19% Similarity=0.331 Sum_probs=207.9
Q ss_pred cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000454 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1491)
Q Consensus 325 gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG 404 (1491)
.|.+.|+.+.+-|... ..+++.+..+.|.|||.....-..... + ...+.....+|...-+.++|++..
T Consensus 122 ~h~gEVnRaRymPQnp--~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~-~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNP--NIVATKTSSGDVYVFDYTKHPSKPKAS---------G-ECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred cCCccchhhhhCCCCC--cEEEecCCCCCEEEEEeccCCCccccc---------c-cCCCceEEEeeccccccccccccc
Confidence 4899999999999876 478888999999999986543222210 0 112223344566667789999854
Q ss_pred -CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 405 -TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 405 -~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
-.|++|+.|+.|++||+...... .........+.+|...|..++|++.. .+.
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h-------------------------~~l 242 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLH-------------------------EDL 242 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccC--CccccceEEeecCCcceehhhccccc-------------------------hhh
Confidence 47899999999999999754332 22244567789999999999999864 468
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccc
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDC 562 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG 562 (1491)
|++++.|+.+.|||+++.. ..+......|...|+|++|+|-+. .||+|+.|+
T Consensus 243 F~sv~dd~~L~iwD~R~~~---------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNT---------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred heeecCCCeEEEEEcCCCC---------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence 9999999999999999521 123445677899999999999654 578899999
Q ss_pred eEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--------------ceEEEEeeCCcc
Q 000454 563 RICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--------------IPIRIYEISRFR 627 (1491)
Q Consensus 563 ~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG--------------k~l~~l~~h~~~ 627 (1491)
+|++||+++. ++++++.+|...|.+|.|+|....+||++|.|+.+.|||+..- +++..-.+|...
T Consensus 296 tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k 375 (422)
T KOG0264|consen 296 TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK 375 (422)
T ss_pred cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc
Confidence 9999999874 5788999999999999999999999999999999999998631 233444567778
Q ss_pred eEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 000454 628 LVDGKFSPDGASII-LSDDVGQLYILNTG 655 (1491)
Q Consensus 628 VtslafSPDG~~LA-sgs~DG~I~IWdl~ 655 (1491)
|.++.|+|...+++ +...|+.+.||...
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999987665 67889999999985
No 135
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.1e-20 Score=225.80 Aligned_cols=295 Identities=16% Similarity=0.205 Sum_probs=204.2
Q ss_pred eeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEE
Q 000454 321 SVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1491)
Q Consensus 321 ~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sla 399 (1491)
+.+. .|.+.|+++.|++||+ +||+||.||.|+||.+...... ............. ......+.-+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGK---yLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~---------~~~~s~~~p~~ 326 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGK---YLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFE---------YNANSQIEPST 326 (712)
T ss_pred eccccccCCcEEEEEeCCCCc---eeeecCCCceEEEEEEeccchh-cccccccchhhhh---------hhhccccCccc
Confidence 4455 7999999999999998 9999999999999998763321 1100000000000 00000000000
Q ss_pred ECC---CCC--EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 400 FNA---NGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 400 fSP---DG~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
.++ .++ ..-.+.....+ +..... ..-..+++..+.||.+.|..|.|+.+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~-~~p~~~-----f~f~ekP~~ef~GHt~DILDlSWSKn-------------------- 380 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCV-LLPLKA-----FVFSEKPFCEFKGHTADILDLSWSKN-------------------- 380 (712)
T ss_pred cccccccccccccccccCCccc-cCCCcc-----ccccccchhhhhccchhheecccccC--------------------
Confidence 000 000 11111111111 111110 00114577889999999999999986
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCC
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNR 553 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~ 553 (1491)
++|++++.|.+|++|++... ....+..|..-|+||+|+| |.+
T Consensus 381 -------~fLLSSSMDKTVRLWh~~~~------------------------------~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 381 -------NFLLSSSMDKTVRLWHPGRK------------------------------ECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred -------CeeEeccccccEEeecCCCc------------------------------ceeeEEecCCeeEEEEecccCCC
Confidence 48999999999999998853 2345677999999999999 788
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC--------C
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------R 625 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h--------~ 625 (1491)
|+++|+-||.|+||++...+.+.-...+ .-|++++|.| ++.+++.|+.+|.+++|+....+....+..+ +
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 9999999999999999877766655444 7899999999 5788889999999999999887777665432 2
Q ss_pred cceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccccccc--------ceeeecCCCcceEEccCCCEEEccccccCccc
Q 000454 626 FRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGESQKDAK--------YDQFFLGDYRPLVQDTYGNVLDQETQLAPHRR 696 (1491)
Q Consensus 626 ~~VtslafSPDG-~~LAsgs~DG~I~IWdl~tG~~~~~~~--------~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw 696 (1491)
..|+.+.|.|.. ..|++++.|..|+|+|..+-.++.... ....|..|+.+++....+..+ |+|
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V--------YiW 573 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV--------YIW 573 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE--------EEE
Confidence 279999998744 368888999999999996665543332 345788899999988777755 689
Q ss_pred cCCCc
Q 000454 697 NLQDP 701 (1491)
Q Consensus 697 ~l~~~ 701 (1491)
.+..+
T Consensus 574 ~~~~~ 578 (712)
T KOG0283|consen 574 KNDSF 578 (712)
T ss_pred eCCCC
Confidence 86443
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.2e-19 Score=197.01 Aligned_cols=295 Identities=20% Similarity=0.308 Sum_probs=211.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEE
Q 000454 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWR 313 (1491)
Q Consensus 240 ~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~----Tg~~l~tL~gH~~~VtsLafSP--DG~lLASGS~DGtIrVWD 313 (1491)
.+|.+-|.|+.|++.|+++|||+.|++|+|||.. +..+....+.|.+.|..|.|.+ -|+.+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999964 3467778889999999999976 689999999999999997
Q ss_pred CCC---------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 314 LPD---------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 314 l~t---------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
-.. .....++......|+.|.|.|.-.+ ..|++++.||+|+||+.-..-.+....+......+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG-LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG-LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV------- 161 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcc-eEEEEeccCcEEEEEecCCccccccchhhhhhhhc-------
Confidence 421 1234456667789999999998644 38999999999999987544333322211111100
Q ss_pred CCCCCCCCcceEEEEECCC---CCEEEEecCC-----ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 385 SSSAGPQSHQIFCCAFNAN---GTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPD---G~~LasGs~D-----G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
......+.....|+.|+|. ..+||+|+.+ +.+.||..... ......+..+.+|..+|+.|+|.|+..
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-----~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-----GRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-----cceeeeehhcCCCCCcceeeeeccccC
Confidence 1122335566789999974 4578888866 47888887542 223566778889999999999999741
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
. ....|++++.|| |+||.+.......... . . ..+..........+..+
T Consensus 237 r----------------------~y~~lAvA~kDg-v~I~~v~~~~s~i~~e------e--~-~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 237 R----------------------SYHLLAVATKDG-VRIFKVKVARSAIEEE------E--V-LAPDLMTDLPVEKVSEL 284 (361)
T ss_pred C----------------------ceeeEEEeecCc-EEEEEEeeccchhhhh------c--c-cCCCCccccceEEeeec
Confidence 1 125799999999 9999988532110000 0 0 00000111122334456
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC---CceEEEEe
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD---GSLVHSLT 579 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t---gkll~tL~ 579 (1491)
..|...|..+.|.-.|..|++.+.||.|++|-..- .++...+.
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence 78999999999999999999999999999997632 34554444
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.2e-19 Score=217.92 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=224.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
+|...-+.|+|.|+|.+|++++.||.|++|+.... ..-.++..+...|.+++.... +|++++.+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-----~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-----HFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-----ceEEeeccceEEEeeCCC
Confidence 68999999999999999999999999999987655 333344437788888887654 799999999999999887
Q ss_pred CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 362 g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
+..-..+ ....-++.+++|+.+|.++|.|+.|-.|++.++.. ......+.+
T Consensus 86 ~~~~~iL--------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D---------~s~~~~lrg 136 (933)
T KOG1274|consen 86 GEEDTIL--------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---------SSQEKVLRG 136 (933)
T ss_pred CCcccee--------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc---------cchheeecc
Confidence 7643222 12355689999999999999999999999999865 345678899
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
|.++|.+|.|.|.+ ..||+.+.||.|++|++.++............
T Consensus 137 h~apVl~l~~~p~~--------------------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-------- 182 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKG--------------------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-------- 182 (933)
T ss_pred cCCceeeeeEcCCC--------------------------CEEEEEecCceEEEEEcccchhhhhcccCCcc--------
Confidence 99999999999986 68999999999999999975432111100000
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeC--CCCCeEEEEEecCCCcEEE
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIAM 599 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g--Hs~~VtsLafSPdd~~lLa 599 (1491)
. -......++.++|+|+|..+++.+.|+.|++|+..++.....|.. +...+.++.|+| .+.|||
T Consensus 183 --------n-----~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiA 248 (933)
T KOG1274|consen 183 --------N-----EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIA 248 (933)
T ss_pred --------c-----cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEe
Confidence 0 001134577899999998899999999999999999998887753 445589999999 789999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 600 SgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
+++.||.|.|||+.+-.. ......|.+++|-|++.-|-.....|...+|
T Consensus 249 As~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999999999999987222 2234589999999999887776666655444
No 138
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2.4e-17 Score=192.41 Aligned_cols=343 Identities=27% Similarity=0.472 Sum_probs=261.7
Q ss_pred cccccce-eEEEEccCCC-CEEEEEE-cCCCC-EEEEEeC-CCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000454 228 TMVQKMQ-NIKRVRGHRN-AVYCAIF-DRSGR-YVITGSD-DRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVA 301 (1491)
Q Consensus 228 ~~v~t~k-~v~tL~GH~~-~Vt~VaF-SpDG~-~LATGS~-DGtIrIWDl~T-g~~l~tL~gH~~~VtsLafSPDG~lLA 301 (1491)
|...... .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ......+..|...|.+++|+|++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 171 (466)
T COG2319 92 WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171 (466)
T ss_pred EEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEE
Confidence 4433333 6777777554 7888888 88888 5555455 99999999998 888899999999999999999999999
Q ss_pred EEEC-CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 302 SASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 302 SGS~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+++. |+.+++|++..+..+..+.+|...|.+++|+|++. ..+++++.|+.|++||...+......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~~~~~~~~~~------------ 237 (466)
T COG2319 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDLSTGKLLRST------------ 237 (466)
T ss_pred ecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEECCCCcEEeee------------
Confidence 9886 99999999999899999999999999999998875 24555599999999987755444311
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
...+...+ ...|++++.++++++.++.+++|++..... .+..+.+|...|.++.|.|.+
T Consensus 238 -------~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~----- 296 (466)
T COG2319 238 -------LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG----- 296 (466)
T ss_pred -------cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC-----
Confidence 12234443 338999998999999999999999975321 233336788999999999853
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
..+++++.|+.+.+|+.......... ....|.
T Consensus 297 ---------------------~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 328 (466)
T COG2319 297 ---------------------KLLASGSSDGTVRLWDLETGKLLSSL---------------------------TLKGHE 328 (466)
T ss_pred ---------------------CEEEEeeCCCcEEEEEcCCCceEEEe---------------------------eecccC
Confidence 46777888999999987753311000 012444
Q ss_pred CCeeEEEEcCCCCEEEEE-eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCceE
Q 000454 541 RGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-AGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSG-s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaS-gS~DGtIrIWDl~tGk~l 618 (1491)
..+..+.|.+++..++.+ ..|+.+.+|++.............. +..+.+.+ . ..++. +..++.+.+|+.......
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeee
Confidence 568888884343566665 6788999999988873333333322 88999998 7 55554 789999999999988887
Q ss_pred EEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
..+......+..+.+++++..++.++.++.+.+|+..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 77764437888999999999999999999999999876
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.3e-19 Score=206.53 Aligned_cols=283 Identities=11% Similarity=0.165 Sum_probs=229.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCCc
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLP 319 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~--Tg~~l~tL~gH~~~VtsLafSPDG~-lLASGS~DGtIrVWDl~tgk~ 319 (1491)
.+.|+||.|+|....|++|+.||+++||.+. +...++.+.--..+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999885 3345666666788999999999999 899999999999999998764
Q ss_pred e--eeeccCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 320 I--SVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 320 i--~~L~gHs-~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
. ..+.++. ..+.....+++++ +|+..+..|.|.+....+++.+..+.+ .+.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki---------------------eG~v~ 348 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI---------------------EGVVS 348 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee---------------------ccEEe
Confidence 3 3334444 4577788999998 999999999999999999998887753 56789
Q ss_pred EEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccc
Q 000454 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1491)
Q Consensus 397 slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~ 476 (1491)
.++|+.+|+.|++.+.+|.|.+||++.. .++..+ -
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~---------~~~~rf------------~------------------------ 383 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQN---------SCLHRF------------V------------------------ 383 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCc---------ceEEEE------------e------------------------
Confidence 9999999999999999999999999641 111111 0
Q ss_pred cccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000454 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 477 ~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1491)
.+|.| .-+++|.|++|.|||
T Consensus 384 ------------D~G~v------------------------------------------------~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 384 ------------DDGSV------------------------------------------------HGTSLCISLNGSYLA 403 (514)
T ss_pred ------------ecCcc------------------------------------------------ceeeeeecCCCceEE
Confidence 11111 125688899999999
Q ss_pred EEeccceEEEEECCC------CceEEEEeCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeeCC---
Q 000454 557 AAIMDCRICVWNAAD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIWEGIPIRIYEISR--- 625 (1491)
Q Consensus 557 SGs~DG~IrIWDl~t------gkll~tL~gHs~~VtsLafSPdd~~lLaSgS--~DGtIrIWDl~tGk~l~~l~~h~--- 625 (1491)
+|+..|.|-|||..+ .+++..+..-...|+.|.|+| +..+||.|+ .+..+++-.+.+......|....
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v 482 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV 482 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcc
Confidence 999999999999643 567777777777899999999 667776665 57789999988877777776443
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 626 FRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 626 ~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+.|+|++|||.|.+||+|...|.|.+|.+.
T Consensus 483 g~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 483 GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cceEEEEecCCCceEEeecCCCceeeEeec
Confidence 368999999999999999999999999873
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=206.41 Aligned_cols=306 Identities=20% Similarity=0.261 Sum_probs=235.4
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCC----CceeeeccCCCceEEEEecCCCCceE
Q 000454 270 WSMETAYCLASCRGHEGDITDLAVSSNN--ALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVY 343 (1491)
Q Consensus 270 WDl~Tg~~l~tL~gH~~~VtsLafSPDG--~lLASGS~DGtIrVWDl~tg----k~i~~L~gHs~~VtsLaFSPdg~s~~ 343 (1491)
.++.+-.....++-+...|++++|+|.. +++|+|+.-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+. .
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--S 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--h
Confidence 4455555666777889999999999954 58999999999999999532 33566788999999999999875 3
Q ss_pred EEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
.+++.+.||+|++-|+..+.....+.. ......+..+.|+.+...+++|..=|...+||+++
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSL------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhc------------------CccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 899999999999999987754333321 11344567888888888888888888999999987
Q ss_pred CCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCC
Q 000454 424 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1491)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~ 503 (1491)
. ......+.-|...|..|++.|.. +.+|+|++.|++++|||++....
T Consensus 311 ~--------~s~~~~~~lh~kKI~sv~~NP~~-------------------------p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 311 D--------GSEYENLRLHKKKITSVALNPVC-------------------------PWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred C--------CccchhhhhhhcccceeecCCCC-------------------------chheeecccCcceeeeehhhhcC
Confidence 4 33456677888899999999974 45899999999999999986321
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECC----CCceEEEEe
Q 000454 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA----DGSLVHSLT 579 (1491)
Q Consensus 504 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~----tgkll~tL~ 579 (1491)
. ..+......|...|.++.|||.|..|++.+.|..|+|||.. .-.+..++.
T Consensus 358 K-------------------------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 358 K-------------------------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred C-------------------------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 1 01345667899999999999999999999999999999983 333333332
Q ss_pred CCCC------CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc-ceEEE-EEcCCCCEEEE-EeCCCcEE
Q 000454 580 GHTE------STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDG-KFSPDGASIIL-SDDVGQLY 650 (1491)
Q Consensus 580 gHs~------~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~-~Vtsl-afSPDG~~LAs-gs~DG~I~ 650 (1491)
|.. .....+|.| +..+++.|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++ ++..|.|+
T Consensus 413 -Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred -ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 221 234568999 778888999999999999988887877654333 45544 89999885554 56789999
Q ss_pred EEECC
Q 000454 651 ILNTG 655 (1491)
Q Consensus 651 IWdl~ 655 (1491)
||--.
T Consensus 491 vft~k 495 (498)
T KOG4328|consen 491 VFTNK 495 (498)
T ss_pred EEecC
Confidence 99754
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=6.3e-20 Score=211.37 Aligned_cols=283 Identities=16% Similarity=0.293 Sum_probs=229.6
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~--gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
.+.+| .|..-|.++++|...+++.||+. |.|+|||+... ..+..|. .....|.++.+.|||+.|++|+.-.+|
T Consensus 412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 33444 48899999999999999999986 67999999632 2233332 346789999999999999999999999
Q ss_pred EEEECCCCCce--eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 310 RVWRLPDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 310 rVWDl~tgk~i--~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
.|||+....+. ..+....-..++++.+||.+ +.+++..||.|.|||+.+...+..+
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDak---vcFsccsdGnI~vwDLhnq~~Vrqf------------------- 547 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAK---VCFSCCSDGNIAVWDLHNQTLVRQF------------------- 547 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccc---eeeeeccCCcEEEEEcccceeeecc-------------------
Confidence 99999866443 33444445688999999998 8999999999999999987766655
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC--CCCCceEEEEccCccccccccccC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG--HENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g--H~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.+|...+.||.+++||..|.+|+-|.+||-||++.+. .+.. ....|.++..+|.+
T Consensus 548 -qGhtDGascIdis~dGtklWTGGlDntvRcWDlregr------------qlqqhdF~SQIfSLg~cP~~---------- 604 (705)
T KOG0639|consen 548 -QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR------------QLQQHDFSSQIFSLGYCPTG---------- 604 (705)
T ss_pred -cCCCCCceeEEecCCCceeecCCCccceeehhhhhhh------------hhhhhhhhhhheecccCCCc----------
Confidence 5689999999999999999999999999999998632 2222 34578888888875
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
+++++|=..+.+-|..... .....+..|...|.+
T Consensus 605 ----------------dWlavGMens~vevlh~sk------------------------------p~kyqlhlheScVLS 638 (705)
T KOG0639|consen 605 ----------------DWLAVGMENSNVEVLHTSK------------------------------PEKYQLHLHESCVLS 638 (705)
T ss_pred ----------------cceeeecccCcEEEEecCC------------------------------ccceeecccccEEEE
Confidence 7899998888887765543 223345567888999
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+.|++.|+++++.+.|..+-.|...-|..+...+ ....|.++.++- +.++++||+.|....||.+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 9999999999999999999999998888887765 456788999987 7789999999988888875
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=5.8e-21 Score=228.48 Aligned_cols=257 Identities=19% Similarity=0.324 Sum_probs=219.9
Q ss_pred CCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
..+++.+...-.++||+.+ .+..|...|.++..-..+. .+++|+.|..+-+|.+.....+..
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r---~~~~Gg~~~k~~L~~i~kp~~i~S--------- 65 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSR---SLVTGGEDEKVNLWAIGKPNAITS--------- 65 (825)
T ss_pred ccccceeeeeeccccccch------hhhhhhhhhceeeeeccce---eeccCCCceeeccccccCCchhhe---------
Confidence 3345555556677888854 3445888888888755554 889999999999998865443332
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
+.+|...|.|+.|++...+|++|+.+|+|++||+.. .+.++.+.+|...+..|.|+|-+
T Consensus 66 -----------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee---------Ak~vrtLtgh~~~~~sv~f~P~~- 124 (825)
T KOG0267|consen 66 -----------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE---------AKIVRTLTGHLLNITSVDFHPYG- 124 (825)
T ss_pred -----------eeccCCcceeeecCcchhhhcccccCCceeeeehhh---------hhhhhhhhccccCcceeeeccce-
Confidence 356899999999999999999999999999999975 55678999999999999999986
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
.++++|+.|+.+.+||++. .++...+
T Consensus 125 -------------------------~~~a~gStdtd~~iwD~Rk-----------------------------~Gc~~~~ 150 (825)
T KOG0267|consen 125 -------------------------EFFASGSTDTDLKIWDIRK-----------------------------KGCSHTY 150 (825)
T ss_pred -------------------------EEeccccccccceehhhhc-----------------------------cCceeee
Confidence 4779999999999999984 2455666
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
.+|...|..+.|+|+|++++.|+.|..++|||+..|+.+..|.+|.+.|..+.|+| ...++++||.|++|++||+++.+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeE
Confidence 77888999999999999999999999999999999999999999999999999999 77899999999999999999999
Q ss_pred eEEEEeeCCcceEEEEEcCCCCEEEEEeCCC
Q 000454 617 PIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1491)
Q Consensus 617 ~l~~l~~h~~~VtslafSPDG~~LAsgs~DG 647 (1491)
.+........+|.+++|+|+|+.+++|....
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 8888887788999999999999999887643
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=213.22 Aligned_cols=273 Identities=12% Similarity=0.203 Sum_probs=213.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg-~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~ 319 (1491)
+|+..-+.|+|.|+|.+|.|++.||.|++|+...- ..-.++.-+...|.+++.. +++|++|+.+++|.+|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 68999999999999999999999999999998665 3334444477788888765 55999999999999999999987
Q ss_pred eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEE
Q 000454 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1491)
Q Consensus 320 i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sla 399 (1491)
-..+...+-++.+++|+-+|. +++.|+.|-.|++.++.+......+ .+|..+|.++.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~---~iaagsdD~~vK~~~~~D~s~~~~l--------------------rgh~apVl~l~ 145 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGK---MIAAGSDDTAVKLLNLDDSSQEKVL--------------------RGHDAPVLQLS 145 (933)
T ss_pred cceeeeeeccceEEEEecCCc---EEEeecCceeEEEEeccccchheee--------------------cccCCceeeee
Confidence 777777788999999999998 9999999999999998877655544 56899999999
Q ss_pred ECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 400 fSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
|+|.+.+||+.+.||.|+||++.++......... ....... ...+..++|+|++
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v--~k~n~~~~s~i~~~~aW~Pk~----------------------- 200 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV--DKDNEFILSRICTRLAWHPKG----------------------- 200 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccC--CccccccccceeeeeeecCCC-----------------------
Confidence 9999999999999999999999765432111110 0011111 4456778999985
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
..|+..+.|+.|++|+..+.. ..+.+. ...+...+..++|+|+|+|||++
T Consensus 201 ---g~la~~~~d~~Vkvy~r~~we---------~~f~Lr------------------~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 201 ---GTLAVPPVDNTVKVYSRKGWE---------LQFKLR------------------DKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred ---CeEEeeccCCeEEEEccCCce---------eheeec------------------ccccccceEEEEEcCCCcEEeee
Confidence 478889999999999887532 222211 12233448999999999999999
Q ss_pred eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000454 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 559 s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~l 597 (1491)
+.+|.|.|||.++-.. ......|++++|.|+.+.+
T Consensus 251 ~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 251 TLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 9999999999987221 2234579999999965543
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.6e-20 Score=224.73 Aligned_cols=238 Identities=23% Similarity=0.409 Sum_probs=208.7
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t 316 (1491)
+.+-.|...|.|+..-..++.+++|+.|..+-+|.+..-..+..|.+|..+|.+|.|++...+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 35567999999999988899999999999999999988888888999999999999999999999999999999999999
Q ss_pred CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 317 gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
++.+++|.+|...+..+.|+|-+. ++++++.|+.+++||++...|...+ .+|...|.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~--------------------~s~~~vv~ 158 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTY--------------------KSHTRVVD 158 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeee--------------------cCCcceeE
Confidence 999999999999999999999987 8899999999999999876666554 34788899
Q ss_pred EEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccc
Q 000454 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1491)
Q Consensus 397 slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~ 476 (1491)
++.|+|+|++++.|+.|..++|||+.. ++.+..+..|.+.|.++.|+|.-
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~a---------gk~~~ef~~~e~~v~sle~hp~e--------------------- 208 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTA---------GKLSKEFKSHEGKVQSLEFHPLE--------------------- 208 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccc---------cccccccccccccccccccCchh---------------------
Confidence 999999999999999999999999965 55677889999999999999863
Q ss_pred cccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000454 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 477 ~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1491)
-.+++|+.|+++++||+++-.. +....+...+|.+.+|+|+|..++
T Consensus 209 -----~Lla~Gs~d~tv~f~dletfe~-----------------------------I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 209 -----VLLAPGSSDRTVRFWDLETFEV-----------------------------ISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred -----hhhccCCCCceeeeeccceeEE-----------------------------eeccCCccCCceeeeecCCceeee
Confidence 3688999999999999986321 111223356799999999999999
Q ss_pred EEecc
Q 000454 557 AAIMD 561 (1491)
Q Consensus 557 SGs~D 561 (1491)
+|...
T Consensus 255 ~G~q~ 259 (825)
T KOG0267|consen 255 SGEQI 259 (825)
T ss_pred cCchh
Confidence 88755
No 145
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.3e-18 Score=191.82 Aligned_cols=285 Identities=16% Similarity=0.220 Sum_probs=215.8
Q ss_pred cccccccccccccCccccccCCCcceeeeccccCCCcccccc-eeE-EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 000454 192 ADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKM-QNI-KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1491)
Q Consensus 192 ~d~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~a~~~~~v~t~-k~v-~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrI 269 (1491)
.|.|..|+|++... ..+.+..++..+..|.++.- ..+ +....|.++|.|++|+.||..+++|+.|+.+++
T Consensus 27 ~DsIS~l~FSP~~~--------~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 27 EDSISALAFSPQAD--------NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ccchheeEeccccC--------ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 47788888876221 22334456666666666542 211 456679999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEE
Q 000454 270 WSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 270 WDl~Tg~~l~tL~gH~~~VtsLafSPDG~--lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaS 347 (1491)
||+.++ .+..+..|.++|.++.|-+... .|+||+.|.+|+.||++...++.++. -...|+++..-.. .+++
T Consensus 99 wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-----m~vV 171 (347)
T KOG0647|consen 99 WDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-----MAVV 171 (347)
T ss_pred EEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-----eeEE
Confidence 999999 5556677999999999988665 89999999999999999999988887 5677888876554 7888
Q ss_pred EeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCC
Q 000454 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 427 (1491)
Q Consensus 348 gS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~ 427 (1491)
+..+..|.+|+++.+...... ...+....+.|++..+|....|.|+-.|.+.|..+..+..
T Consensus 172 ata~r~i~vynL~n~~te~k~------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~- 232 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKR------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP- 232 (347)
T ss_pred EecCCcEEEEEcCCCcchhhh------------------hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-
Confidence 999999999999766432221 1233567799999999998899999999999998864211
Q ss_pred CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccc
Q 000454 428 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA 507 (1491)
Q Consensus 428 ~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~ 507 (1491)
..-..++.|...- +.++ .|
T Consensus 233 ------~~nFtFkCHR~~~-----------------------------------------~~~~--~V------------ 251 (347)
T KOG0647|consen 233 ------KDNFTFKCHRSTN-----------------------------------------SVND--DV------------ 251 (347)
T ss_pred ------cCceeEEEeccCC-----------------------------------------CCCC--ce------------
Confidence 1111222222100 0000 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEE
Q 000454 508 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 587 (1491)
Q Consensus 508 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~Vts 587 (1491)
..|++|+|+|.-..|++++.||++.+||-.....+.+...|..+|++
T Consensus 252 ---------------------------------YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 252 ---------------------------------YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred ---------------------------------EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 25788999999999999999999999999888888888899999999
Q ss_pred EEEecCCCcEEEEEeCC
Q 000454 588 LDVHPFNPRIAMSAGYD 604 (1491)
Q Consensus 588 LafSPdd~~lLaSgS~D 604 (1491)
..|+.+|..++.+.|+|
T Consensus 299 c~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 299 CSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEecCCCCEEEEEeecc
Confidence 99999666666666666
No 146
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=218.94 Aligned_cols=273 Identities=18% Similarity=0.266 Sum_probs=196.7
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+.++.+.||...|.|++|...|.++++|+.|..|+||.++++.+++.+.||.+.|+.++.+..+. ++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~---~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT---MIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh---hhhhcccCceEE
Confidence 34456679999999999999999999999999999999999999999999999999999998876 899999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
+|.+.++..+..+ .+|.+.|++++|+|-. +.+.||++++||.+-........|
T Consensus 258 vWrl~~~~pvsvL--------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp--- 310 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVL--------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP--- 310 (1113)
T ss_pred EEecCCCchHHHH--------------------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCC---
Confidence 9999998877666 4699999999999964 678899999999861100000000
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccc
Q 000454 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1491)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1491)
.. + .....+.++.|...+ ..++|++.|+....|.+.
T Consensus 311 ~~-~-~~~~~~~s~~~~~~~--------------------------~~f~Tgs~d~ea~n~e~~---------------- 346 (1113)
T KOG0644|consen 311 LK-F-TEKDLVDSILFENNG--------------------------DRFLTGSRDGEARNHEFE---------------- 346 (1113)
T ss_pred CC-c-ccccceeeeeccccc--------------------------cccccccCCcccccchhh----------------
Confidence 00 0 011223333333322 355666666655555322
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCC
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~ 595 (1491)
+++|...+-.+++.+. +-.
T Consensus 347 -----------------------------~l~~~~~~lif~t~ss--------------------------------d~~ 365 (1113)
T KOG0644|consen 347 -----------------------------QLAWRSNLLIFVTRSS--------------------------------DLS 365 (1113)
T ss_pred -----------------------------HhhhhccceEEEeccc--------------------------------ccc
Confidence 1223222222222222 112
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCcccccc------cceee
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGESQKDA------KYDQF 668 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LA-sgs~DG~I~IWdl~tG~~~~~~------~~~~~ 668 (1491)
.+.+++-.+..+++|++.+|.+++.+.+|...+..+.|+|-...++ +++.||...|||+..|..++.. ..+..
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~k 445 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGK 445 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccc
Confidence 3455666677899999999999999999999999999999887776 6899999999999888664422 23446
Q ss_pred ecCCCcceEE-ccCCC
Q 000454 669 FLGDYRPLVQ-DTYGN 683 (1491)
Q Consensus 669 fs~D~r~La~-d~~G~ 683 (1491)
|++||..++. +.+|.
T Consensus 446 FSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 446 FSQDGTSIALSDDHGQ 461 (1113)
T ss_pred cCCCCceEecCCCCCc
Confidence 7777766543 34444
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=2.7e-18 Score=197.77 Aligned_cols=309 Identities=18% Similarity=0.243 Sum_probs=227.6
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSMETA----YCLASCRGHEGDITDLAVSSNN-ALVAS 302 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG--~~LATGS~DGtIrIWDl~Tg----~~l~tL~gH~~~VtsLafSPDG-~lLAS 302 (1491)
...+......+-|.+.|+|++|+|.. ++||+|..-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+ ..+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34456667788899999999999965 58899999999999999522 3355677899999999999954 58889
Q ss_pred EECCCeEEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 303 ASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 303 GS~DGtIrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
.+.||+|++-|++.+..-..+. .-...+..+.|+.+.. .++.+..=|.+.+||++++......
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~---~vl~~~~~G~f~~iD~R~~~s~~~~------------ 317 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR---SVLFGDNVGNFNVIDLRTDGSEYEN------------ 317 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc---cEEEeecccceEEEEeecCCccchh------------
Confidence 9999999999998775433333 3556778888988876 6777777789999999977542111
Q ss_pred CCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
...|...|..++++|-. .+||+++.|++++|||++......+ ++.....|...|.+..|+|.+
T Consensus 318 -------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~---- 381 (498)
T KOG4328|consen 318 -------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG---- 381 (498)
T ss_pred -------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC----
Confidence 13366789999999954 6789999999999999986432111 245567899999999999986
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
..|+|.+.|..|+|||..- ...|.. +. ..+..-..+
T Consensus 382 ----------------------gtl~TT~~D~~IRv~dss~------~sa~~~-------p~---------~~I~Hn~~t 417 (498)
T KOG4328|consen 382 ----------------------GTLLTTCQDNEIRVFDSSC------ISAKDE-------PL---------GTIPHNNRT 417 (498)
T ss_pred ----------------------CceEeeccCCceEEeeccc------ccccCC-------cc---------ceeeccCcc
Confidence 3599999999999998741 000100 00 000000111
Q ss_pred CC--CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCC-CeEE-EEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 540 PR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYV-LDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 540 ~~--~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~-~Vts-LafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.. .....+|.|+..+|++|-.-..|-|+|...++.+..+..... .|.+ ..|||.+..+++-++..|.|+||--.
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 11 134468999999999999999999999999998888765543 4544 58999655577666678888888653
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=7.4e-19 Score=212.24 Aligned_cols=287 Identities=11% Similarity=0.203 Sum_probs=215.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----CceeeeccC---CCceEEEEecCCCCceEEEEEEeCCCcEEEEc
Q 000454 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDG----LPISVLRGH---TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1491)
Q Consensus 286 ~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg----k~i~~L~gH---s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD 358 (1491)
..+.+|...++-..|+.++.. .+.||.+... .+...+... ...+..|.|..... ++|++++..|.|.+||
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~--NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS--NLIATCSTNGVISVWD 116 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchh--hhheeecCCCcEEEEe
Confidence 445667777887777777654 6778776532 122222211 12355677875433 4899999999999999
Q ss_pred cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 359 l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
+...--...+ ..+..|...+.++.|++. ..+|++|+.||+|++||++. .....
T Consensus 117 lnk~~rnk~l-----------------~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~---------~~S~~ 170 (839)
T KOG0269|consen 117 LNKSIRNKLL-----------------TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS---------KKSKS 170 (839)
T ss_pred cCccccchhh-----------------hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec---------ccccc
Confidence 9752111111 112458889999999984 57899999999999999986 33455
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+.+....|..|+|+|.. +..|+++...|.+++||++...
T Consensus 171 t~~~nSESiRDV~fsp~~-------------------------~~~F~s~~dsG~lqlWDlRqp~--------------- 210 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGY-------------------------GNKFASIHDSGYLQLWDLRQPD--------------- 210 (839)
T ss_pred cccccchhhhceeeccCC-------------------------CceEEEecCCceEEEeeccCch---------------
Confidence 667788899999999864 5789999999999999999532
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCc
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPR 596 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~ 596 (1491)
.....+..|.+.|.|+.|+|++.+||+|+.|+.|+|||+.+++.-....-+ ..+|.+|.|-|....
T Consensus 211 -------------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 211 -------------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred -------------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 345567889999999999999999999999999999999876543333222 457999999998888
Q ss_pred EEEEEe--CCCcEEEEeCCCC-ceEEEEeeCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 000454 597 IAMSAG--YDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 597 lLaSgS--~DGtIrIWDl~tG-k~l~~l~~h~~~VtslafSP-DG~~LAsgs~DG~I~IWdl 654 (1491)
.|++++ .|-.|+|||+... -+..+|..|...++.++|-. |-..|.+++.||.|..-.+
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 888886 5889999999764 67888998999999999965 4455667777777654443
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=1.4e-17 Score=195.78 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=141.8
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLA 557 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaS 557 (1491)
|+..+|++++.||.|++|.+..+... .....+...+..|...|+++.|+|- ...|++
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~----------------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLP----------------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCC----------------------cccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 45679999999999999988753311 1123455667889999999999994 457889
Q ss_pred EeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeeCC-cceEEEEEcC
Q 000454 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSP 635 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk-~l~~l~~h~-~~VtslafSP 635 (1491)
++.|.+|+|||+.+++....|.+|++.|..++|+| +++.+|+.+.||+|+||....++ ++..-.+.. ..--.|.|.-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 99999999999999999999999999999999999 78899999999999999987764 333322211 1234688999
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCcc--cccc-----c--ceeeecCCCcceEEccCCCE---EEccccccCccccCC
Q 000454 636 DGASIILSDDV----GQLYILNTGQGES--QKDA-----K--YDQFFLGDYRPLVQDTYGNV---LDQETQLAPHRRNLQ 699 (1491)
Q Consensus 636 DG~~LAsgs~D----G~I~IWdl~tG~~--~~~~-----~--~~~~fs~D~r~La~d~~G~v---Lde~tq~~p~Lw~l~ 699 (1491)
||++|++.+.| .+|.+|+..+-.. +... + .-.++..|...|.....|.. +.+-+-..|++.++.
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~ 854 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA 854 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence 99999987654 4788888755331 1111 1 11244455555555555532 122334445555544
Q ss_pred Ccc
Q 000454 700 DPL 702 (1491)
Q Consensus 700 ~~l 702 (1491)
.+.
T Consensus 855 ~f~ 857 (1012)
T KOG1445|consen 855 PFM 857 (1012)
T ss_pred ccc
Confidence 443
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.4e-18 Score=202.47 Aligned_cols=334 Identities=16% Similarity=0.271 Sum_probs=238.7
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+...++||++.|.+|...|.|.+||+|+.||+|+||.+.+|.|+.++. ..+.|.||+|+|.+.. ..||++-.. .+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~-~vLAvA~~~-~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDL-CVLAVAVGE-CVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCc-eeEEEEecC-ceEE
Confidence 445678999999999999999999999999999999999999999887 5678999999999853 345444444 4667
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe----cCCceEEEEeCCCCCCCCCCCC
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG----SSDTLARVWNACKPNTDDSDQP 432 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG----s~DG~IrVWDl~t~~~~~s~~~ 432 (1491)
.+..-|..+... +....|+.+ ..++.+..|.-.... +.
T Consensus 469 vnp~~G~~~e~~---------------------------------~t~ell~~~~~~~~p~~~~~~W~~~~~~-----e~ 510 (733)
T KOG0650|consen 469 VNPIFGDRLEVG---------------------------------PTKELLASAPNESEPDAAVVTWSRASLD-----EL 510 (733)
T ss_pred eCccccchhhhc---------------------------------chhhhhhcCCCccCCcccceeechhhhh-----hh
Confidence 665444211110 000111111 123456677653211 11
Q ss_pred CceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCC---CeEEEEecCCCCCCccccc
Q 000454 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSAIIWIPRSRRSHPKAAR 509 (1491)
Q Consensus 433 ~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D---GtIrIWDl~s~k~~~~~~~ 509 (1491)
..-+.....|...|..|.|+..| ++|++...+ ..|.|.++...+.
T Consensus 511 ~~~v~~~I~~~k~i~~vtWHrkG--------------------------DYlatV~~~~~~~~VliHQLSK~~s------ 558 (733)
T KOG0650|consen 511 EKGVCIVIKHPKSIRQVTWHRKG--------------------------DYLATVMPDSGNKSVLIHQLSKRKS------ 558 (733)
T ss_pred ccceEEEEecCCccceeeeecCC--------------------------ceEEEeccCCCcceEEEEecccccc------
Confidence 12245556788899999999876 788887654 4577777764321
Q ss_pred cccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEE
Q 000454 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1491)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLa 589 (1491)
..-+....+.|.++.|+|...+|++++. ..|+|||+..+.++..+......|..++
T Consensus 559 -----------------------Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 559 -----------------------QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMS 614 (733)
T ss_pred -----------------------cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeee
Confidence 0112234456889999999999998865 4899999999888888877778899999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceee
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tG-k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~ 668 (1491)
+|| ++.-|+.++.|+.+..+|+.-+ ++.+++..|...|++++|++--.++++|+.||.+.||--
T Consensus 615 ihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg-------------- 679 (733)
T KOG0650|consen 615 IHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG-------------- 679 (733)
T ss_pred ecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee--------------
Confidence 999 4555557999999999999754 688888889999999999999999999999999999863
Q ss_pred ecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCc
Q 000454 669 FLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 748 (1491)
Q Consensus 669 fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~ 748 (1491)
.| ..+..+.|.+.++.- +++..-...++|+.+.|+|.-.+|.++ ..|++
T Consensus 680 --------------~V-Y~Dl~qnpliVPlK~-------------L~gH~~~~~~gVLd~~wHP~qpWLfsA---GAd~t 728 (733)
T KOG0650|consen 680 --------------MV-YNDLLQNPLIVPLKR-------------LRGHEKTNDLGVLDTIWHPRQPWLFSA---GADGT 728 (733)
T ss_pred --------------ee-ehhhhcCCceEeeee-------------ccCceeecccceEeecccCCCceEEec---CCCce
Confidence 11 111112222222211 111111245779999999999999998 89999
Q ss_pred EEecc
Q 000454 749 YQLQP 753 (1491)
Q Consensus 749 v~lw~ 753 (1491)
++||.
T Consensus 729 irlfT 733 (733)
T KOG0650|consen 729 IRLFT 733 (733)
T ss_pred EEeeC
Confidence 99984
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=4.8e-18 Score=193.62 Aligned_cols=310 Identities=19% Similarity=0.279 Sum_probs=220.8
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 243 RNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETA---------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~Tg---------~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
..+|+.+.|.+... +||||+.|..|+||-+..+ +.+..|..|...|++|.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999776 9999999999999988543 2345677899999999999999999999999999999
Q ss_pred ECC--------C--------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 313 RLP--------D--------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 313 Dl~--------t--------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
-.. + ......+.+|...|+.++|+|++. ++++++.|..+++||+..|+....+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~-------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAIL-------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeec--------
Confidence 765 2 122456778999999999999997 9999999999999999999876655
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC-ceEEEEccCc
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND-VNYVQFSGCA 455 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~-V~sVafSpdg 455 (1491)
..|...+..++|.|-++++++-+.|...+++.+... .....|... +...++.+.
T Consensus 162 ------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~------------~~~~~~~~~~m~~~~~~~~- 216 (434)
T KOG1009|consen 162 ------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK------------QVIKRHGLDIMPAKAFNER- 216 (434)
T ss_pred ------------cccccccceeecchhhhhhhhhccCcccceeeeeee------------eeeeeeeeeEeeecccCCC-
Confidence 458899999999999999999998887777766321 111111100 000001100
Q ss_pred cccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 456 ~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
.....+++.=.+.
T Consensus 217 ---------------------------------e~~s~rLfhDeTl---------------------------------- 229 (434)
T KOG1009|consen 217 ---------------------------------EGKSTRLFHDETL---------------------------------- 229 (434)
T ss_pred ---------------------------------CcceeeeeecCch----------------------------------
Confidence 0111222221110
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEec---------cceEEEEECCC-CceEEEEeCCCCCeEEEEEecC------------
Q 000454 536 ILPTPRGVNMIVWSLDNRFVLAAIM---------DCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF------------ 593 (1491)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSGs~---------DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPd------------ 593 (1491)
..-...++|+|||.+|++... -+..++|+-.. .++...+.+...++..+.|+|-
T Consensus 230 ----ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 230 ----KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred ----hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 011344678888888887431 12345555432 3445566666666666666651
Q ss_pred -----CCcEEEEEeCCCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 000454 594 -----NPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 594 -----d~~lLaSgS~DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
-+..+|.++ -..|.|||..+-.++.... .|-..|++++|++||.+|++.+.||...+.-+...++-
T Consensus 306 ~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 306 LFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 112333344 5579999999988887664 46668999999999999999999999988888776653
No 152
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.1e-16 Score=197.32 Aligned_cols=363 Identities=16% Similarity=0.186 Sum_probs=253.0
Q ss_pred CCcccccceeEEEEccCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeEEEEE---------------------
Q 000454 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSG---RYVITGSDDRLVKIWSMETAYCLASC--------------------- 281 (1491)
Q Consensus 226 ~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG---~~LATGS~DGtIrIWDl~Tg~~l~tL--------------------- 281 (1491)
......+..+++.|.+|..+++.+.+.|.. .++++++.||+|++||...+.+++++
T Consensus 40 ~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~ 119 (792)
T KOG1963|consen 40 KVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISAN 119 (792)
T ss_pred EEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccce
Confidence 345567889999999999999999999854 47889999999999998654432221
Q ss_pred --------------------------------------------------------------------------------
Q 000454 282 -------------------------------------------------------------------------------- 281 (1491)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (1491)
T Consensus 120 ~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~ 199 (792)
T KOG1963|consen 120 VYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD 199 (792)
T ss_pred eEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccch
Confidence
Q ss_pred --ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C--CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 282 --RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 282 --~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t--g--k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
..|.-.++|.+++|+++++|+|..||.|.||.--. + .....+.-|...|.+++|+++|. +|++|+..|.+.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~---~LlSGG~E~VLv 276 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA---YLLSGGREGVLV 276 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc---eEeecccceEEE
Confidence 02445578899999999999999999999996322 1 23456777999999999999998 999999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
+|.+.+++ +++ + ..-+..|..+.++||+.+.+....|..|.+..+.+.......+....
T Consensus 277 ~Wq~~T~~--kqf-L------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 277 LWQLETGK--KQF-L------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred EEeecCCC--ccc-c------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 99999887 222 1 12467899999999999999999999999998754322111110000
Q ss_pred e--eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 436 I--DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 436 i--~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
. ..-....+-.+.+.+.|.. +.++-.+..|.|.+||+.+.....+.......
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~--------------------------~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n 389 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRT--------------------------NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDEN 389 (792)
T ss_pred CCccccccccccceeEEEcCCC--------------------------CceeecCCCceEEEEeccccceeeeEEEEeec
Confidence 0 0011123345556666632 47888899999999999875533221111111
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe--------cc--ceEEEEECCCC----ceEEEE-
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI--------MD--CRICVWNAADG----SLVHSL- 578 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs--------~D--G~IrIWDl~tg----kll~tL- 578 (1491)
+.. +. ..+...++.++.+..|.+++|+- .| -.+++|-.... .+...+
T Consensus 390 ~~~-------------~~-----~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~ 451 (792)
T KOG1963|consen 390 YSD-------------GD-----VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN 451 (792)
T ss_pred ccC-------------Cc-----ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe
Confidence 000 00 02334678888999999999853 22 35788876443 333322
Q ss_pred eCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCC------C----ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCC
Q 000454 579 TGHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWE------G----IPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1491)
Q Consensus 579 ~gHs~~VtsLafSPdd~~-lLaSgS~DGtIrIWDl~t------G----k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG 647 (1491)
..|...+...++.+.... .+++++.||.++||-+.. . .|...-..|..+++.++||.||..|+++ .++
T Consensus 452 ~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~ 530 (792)
T KOG1963|consen 452 NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDD 530 (792)
T ss_pred cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCC
Confidence 467777666666553444 888999999999998832 1 2222222367799999999999766655 458
Q ss_pred cEEEEECCCC
Q 000454 648 QLYILNTGQG 657 (1491)
Q Consensus 648 ~I~IWdl~tG 657 (1491)
.|.|||..+.
T Consensus 531 ~Itiwd~~~~ 540 (792)
T KOG1963|consen 531 TITIWDYDTK 540 (792)
T ss_pred EEEEecCCCh
Confidence 9999999883
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4e-18 Score=188.36 Aligned_cols=294 Identities=17% Similarity=0.197 Sum_probs=211.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 288 VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
..|+.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++|+++|. .|++++.|..|.+||+..|.++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---KLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---EeeeecCCceeEEEeccCCCceeE
Confidence 78999999999999999999999999999998899999999999999999998 999999999999999999999888
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEE-EecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCC
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-END 445 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~La-sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~ 445 (1491)
+.+ ..+|+.+.|+|.....+ +.-.+..-.+.++..+. ...+... .+.
T Consensus 103 irf---------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~----------h~~Lp~d~d~d 151 (405)
T KOG1273|consen 103 IRF---------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK----------HSVLPKDDDGD 151 (405)
T ss_pred EEc---------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCc----------eeeccCCCccc
Confidence 864 55688999998543222 22222223333332110 0000000 000
Q ss_pred ----ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 446 ----VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 446 ----V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
-.+..|.+. ++++++|...|.+.++|..+.+...
T Consensus 152 ln~sas~~~fdr~--------------------------g~yIitGtsKGkllv~~a~t~e~va---------------- 189 (405)
T KOG1273|consen 152 LNSSASHGVFDRR--------------------------GKYIITGTSKGKLLVYDAETLECVA---------------- 189 (405)
T ss_pred cccccccccccCC--------------------------CCEEEEecCcceEEEEecchheeee----------------
Confidence 001122222 4799999999999999988743211
Q ss_pred CCCCCCCCCCCceeccCC-CCCeeEEEEcCCCCEEEEEeccceEEEEECCC-------Cc--eEEEEeC--CCCCeEEEE
Q 000454 522 PMPPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GS--LVHSLTG--HTESTYVLD 589 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h-~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-------gk--ll~tL~g--Hs~~VtsLa 589 (1491)
.+... ...|..+.++..|++|++-+.|..|+.|++.. ++ +.+.+.. ..-.=.+++
T Consensus 190 -------------s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 190 -------------SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred -------------eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 11111 35688899999999999999999999999863 11 1111110 011224678
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceee
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~-~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~ 668 (1491)
|+.++..++++...-..++||.-..|.+++.+.+..+ ...++.|.|-...|++- ..|.|+||.... .+.-.+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~------~enwsa 329 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ------VENWSA 329 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec------ccchhh
Confidence 8885545554445567899999999999999998874 67799999999888877 679999998743 334457
Q ss_pred ecCCCcceE
Q 000454 669 FLGDYRPLV 677 (1491)
Q Consensus 669 fs~D~r~La 677 (1491)
|+||++.|.
T Consensus 330 fAPdFqele 338 (405)
T KOG1273|consen 330 FAPDFQELE 338 (405)
T ss_pred cCchHHHHH
Confidence 888888763
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-17 Score=184.57 Aligned_cols=272 Identities=15% Similarity=0.200 Sum_probs=204.4
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA- 402 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP- 402 (1491)
.+|..-|+++.|.+.|+ ++++|+.|++|+|||.+...-.... ......|.+.|..+.|.+
T Consensus 10 s~h~DlihdVs~D~~GR---RmAtCSsDq~vkI~d~~~~s~~W~~----------------Ts~Wrah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR---RMATCSSDQTVKIWDSTSDSGTWSC----------------TSSWRAHDGSIWRVVWAHP 70 (361)
T ss_pred cCCcceeeeeeecccCc---eeeeccCCCcEEEEeccCCCCceEE----------------eeeEEecCCcEEEEEecCc
Confidence 46889999999999998 9999999999999997654322222 233456889999999966
Q ss_pred -CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 403 -NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 403 -DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
-|+.+|+++.|+++.||.-.................+......|+.|.|.|... +
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl------------------------G 126 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL------------------------G 126 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc------------------------c
Confidence 489999999999999998643332233334566777888889999999998642 2
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC---CCEEEEE
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD---NRFVLAA 558 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD---G~~LaSG 558 (1491)
=.+++++.||.++||+.-.. .....|.-...+..-.. ....+.....|+.|+|. ..+||+|
T Consensus 127 LklA~~~aDG~lRIYEA~dp---~nLs~W~Lq~Ei~~~~~-------------pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDP---MNLSQWTLQHEIQNVID-------------PPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred eEEEEeccCcEEEEEecCCc---cccccchhhhhhhhccC-------------CcccccCcceEEeeccccccCceEEEE
Confidence 37999999999999986642 23344544433321111 01123445678899874 3578888
Q ss_pred ecc-----ceEEEEECCCC----ceEEEEeCCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC-----------
Q 000454 559 IMD-----CRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNP---RIAMSAGYDGKTIVWDIWEG----------- 615 (1491)
Q Consensus 559 s~D-----G~IrIWDl~tg----kll~tL~gHs~~VtsLafSPdd~---~lLaSgS~DGtIrIWDl~tG----------- 615 (1491)
+.+ +.++||....+ ..+.+|.+|..+|+.|+|.|.-+ .+||+++.|| |+||.+...
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 766 47888876543 34557889999999999999655 5899999999 999998621
Q ss_pred ---------ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 616 ---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 616 ---------k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+.+..+..|.+.|+.+.|.-.|..|++++.||.|++|...
T Consensus 270 ~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 270 PDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2345567889999999999999999999999999999863
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=4.3e-18 Score=192.07 Aligned_cols=267 Identities=16% Similarity=0.285 Sum_probs=196.3
Q ss_pred eccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC
Q 000454 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP 402 (1491)
...|.+.|..+...+-++. .+.++-+..|.|.||++...- ..+ ..+..........+.....+|...=+.++|||
T Consensus 147 ~i~h~g~~NRvr~~~~~~~-~~~aswse~G~V~Vw~l~~~l--~~l--~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNE-VLCASWSENGRVQVWDLAPHL--NAL--SEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccceeeecccCCc-ceeeeecccCcEEEEEchhhh--hhh--cCccccccccccCceEEecccCccceeeeccc
Confidence 3457778888877776643 277788889999999986321 111 11111111233444556677888889999999
Q ss_pred CC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 403 NG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 403 DG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
-. ..|++|..-+.|++|...++.-. .-...+.+|+..|..++|+|.- .
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~------vd~~Pf~gH~~SVEDLqWSptE-------------------------~ 270 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWK------VDQRPFTGHTKSVEDLQWSPTE-------------------------D 270 (440)
T ss_pred ccccccccCccccceEeeeeccCcee------ecCccccccccchhhhccCCcc-------------------------C
Confidence 32 34788888899999998764321 1223467799999999999974 4
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1491)
..|++||.||+|+|||++.+.. .+......|...|+.|.|+.+-.+||+|+.|
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~---------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPK---------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred ceEEeeecCceEEEEEecCCCc---------------------------cceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 6899999999999999997431 1223336788899999999999999999999
Q ss_pred ceEEEEECCC---CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----------------eEEEEe
Q 000454 562 CRICVWNAAD---GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI----------------PIRIYE 622 (1491)
Q Consensus 562 G~IrIWDl~t---gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk----------------~l~~l~ 622 (1491)
|+++|||++. ++++..|+-|..+|++|.|+|.....|+++|.|.+|.|||+.-.. +-+.+.
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF 403 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence 9999999975 678999999999999999999888999999999999999985211 112233
Q ss_pred eC--CcceEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 000454 623 IS--RFRLVDGKFSPDGA-SIILSDDVGQLYILN 653 (1491)
Q Consensus 623 ~h--~~~VtslafSPDG~-~LAsgs~DG~I~IWd 653 (1491)
.| ...|..+.|++.-. +|++++.|| +.||.
T Consensus 404 VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 404 VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 33 34678899999754 566666666 45554
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.3e-17 Score=189.00 Aligned_cols=287 Identities=15% Similarity=0.139 Sum_probs=215.1
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
+..+.|+++.|+|...+|++++.|+.++||.+.. .....+..+.-..-+|.+..|.|+|
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-------k~N~~lqS~~l~~fPi~~a~f~p~G-------------- 269 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-------KVNPKLQSIHLEKFPIQKAEFAPNG-------------- 269 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecC-------ccChhheeeeeccCccceeeecCCC--------------
Confidence 3567799999999999999999999999999863 2234555555567789999999987
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC-CCCeeEEEE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT-PRGVNMIVW 548 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h-~~~VtsVaf 548 (1491)
+..+++++....++.||+.+.+... +....++ ...+..+..
T Consensus 270 -----------~~~i~~s~rrky~ysyDle~ak~~k---------------------------~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 270 -----------HSVIFTSGRRKYLYSYDLETAKVTK---------------------------LKPPYGVEEKSMERFEV 311 (514)
T ss_pred -----------ceEEEecccceEEEEeecccccccc---------------------------ccCCCCcccchhheeEe
Confidence 3589999999999999998755211 1111122 234677889
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc-c
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-R 627 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~-~ 627 (1491)
|+++++|+..+..|.|.|....+++++.+++ -.+.|..++|+. +++.|++++.+|.|.+||+....+++.+....+ .
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccc
Confidence 9999999999999999999999999999887 467799999998 556666777899999999999999999873322 3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------c------cccccceeeecCCCcceEEccCCCEEEccccccCcc
Q 000454 628 LVDGKFSPDGASIILSDDVGQLYILNTGQGE------S------QKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 695 (1491)
Q Consensus 628 VtslafSPDG~~LAsgs~DG~I~IWdl~tG~------~------~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~L 695 (1491)
-+.+|.|++|.|||+|+..|.|.|||..+.- + +...+..+.|.+|...|+..+...- . +..|
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k---n---alrL 463 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK---N---ALRL 463 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc---c---ceEE
Confidence 4578889999999999999999999965432 1 2234567789999988876554431 0 1123
Q ss_pred ccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccC
Q 000454 696 RNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1491)
Q Consensus 696 w~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~ 754 (1491)
..+|...+- +..|.+. . .-..+..++|||.|-+||+| ...+++.||-+
T Consensus 464 VHvPS~TVF-sNfP~~n--~-----~vg~vtc~aFSP~sG~lAvG---Ne~grv~l~kL 511 (514)
T KOG2055|consen 464 VHVPSCTVF-SNFPTSN--T-----KVGHVTCMAFSPNSGYLAVG---NEAGRVHLFKL 511 (514)
T ss_pred Eeccceeee-ccCCCCC--C-----cccceEEEEecCCCceEEee---cCCCceeeEee
Confidence 334443332 2222221 1 12247789999999999999 88889999976
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2e-18 Score=216.80 Aligned_cols=287 Identities=21% Similarity=0.354 Sum_probs=222.3
Q ss_pred EEEEEcCCCC-EEEEE----------eCCCeEEEEECC--CCe----EEEEEecCCCCeEEEEEcCCCCE----EEEEEC
Q 000454 247 YCAIFDRSGR-YVITG----------SDDRLVKIWSME--TAY----CLASCRGHEGDITDLAVSSNNAL----VASASN 305 (1491)
Q Consensus 247 t~VaFSpDG~-~LATG----------S~DGtIrIWDl~--Tg~----~l~tL~gH~~~VtsLafSPDG~l----LASGS~ 305 (1491)
-.++|+|++. ++|+| +.+.++-||.+. +.. .+..+. -......++|.+.|.. ||.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3578888886 55655 334566666553 222 333333 3456789999987764 899999
Q ss_pred CCeEEEEECCC---C---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccC
Q 000454 306 DCIIRVWRLPD---G---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 306 DGtIrVWDl~t---g---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g 379 (1491)
||.|.+||... + ..+..+..|++.|..+.|++... ++|++|+.||.|.|||+...+..... +
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~--nlLASGa~~geI~iWDlnn~~tP~~~----------~ 156 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG--NLLASGADDGEILIWDLNKPETPFTP----------G 156 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC--ceeeccCCCCcEEEeccCCcCCCCCC----------C
Confidence 99999999765 2 34567778999999999999876 48999999999999999864422221 0
Q ss_pred CCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC--CceEEEEccCcc
Q 000454 380 RNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN--DVNYVQFSGCAV 456 (1491)
Q Consensus 380 ~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~--~V~sVafSpdg~ 456 (1491)
.......|.+++|+.. ...|++++.+|.+.|||++.. +.+..+..+.+ .+..|+|+|+..
T Consensus 157 --------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---------~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 157 --------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---------KPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred --------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC---------CcccccccCCCccceeeeeeCCCCc
Confidence 1235678999999874 467889999999999999863 34444444443 578999999862
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCC---eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
..+++++.|. .|.+||++.. ..+.
T Consensus 220 -------------------------Tql~~As~dd~~PviqlWDlR~a----------------------------ssP~ 246 (1049)
T KOG0307|consen 220 -------------------------TQLLVASGDDSAPVIQLWDLRFA----------------------------SSPL 246 (1049)
T ss_pred -------------------------eeeeeecCCCCCceeEeeccccc----------------------------CCch
Confidence 4677776653 5889998852 2456
Q ss_pred eeccCCCCCeeEEEEcCCC-CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 534 QRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+.+.+|..+|.++.|++.+ ++|++++.|+.|.+|+..+|+.+..+......++.+.|+|-++.+++.++.||.|.|+.+
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 6678899999999999977 889999999999999999999999999888999999999988889999999999999999
Q ss_pred CCCc
Q 000454 613 WEGI 616 (1491)
Q Consensus 613 ~tGk 616 (1491)
..+.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 6543
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=6.8e-18 Score=183.19 Aligned_cols=312 Identities=17% Similarity=0.237 Sum_probs=218.0
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.++..|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 45678889999999999999876 8999999999999999999998888 57889999999887 467788899999999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCC-cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG-TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG-tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
++.-+..+. .|.-.+.++.|++.. +...+... .+.+++-+.............. ..........+.
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrfS-----l~~~~k~~eqll~yp~rgsde~h~~D~g~~t-----qv~i~dd~~~~K 149 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRFS-----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-----QVQIADDSERSK 149 (323)
T ss_pred EccCcceEE---Eeeeeccccccccce-----eccCCCcchhheecCCcccchhhhhccCccc-----eeEccCchhccc
Confidence 997655433 355667777777642 22222221 1222222111110000000000 000011122345
Q ss_pred CcceEEEEECC-CC--CEEEEecCCceEEEEeCCCCCCC-CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 392 SHQIFCCAFNA-NG--TVFVTGSSDTLARVWNACKPNTD-DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 392 ~~~V~slafSP-DG--~~LasGs~DG~IrVWDl~t~~~~-~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.+.++|..+.. ++ -++++|..+|.|.+||+.++... ...+..+.......|..+|.++.+.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------------ 217 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------------ 217 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh------------
Confidence 56677777544 23 35778999999999999875221 1222334555667899999999998642
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
+.=++|+.+..+..|.+...... ........-...+|..+.
T Consensus 218 --------------~rGisgga~dkl~~~Sl~~s~gs-------------------------lq~~~e~~lknpGv~gvr 258 (323)
T KOG0322|consen 218 --------------DRGISGGADDKLVMYSLNHSTGS-------------------------LQIRKEITLKNPGVSGVR 258 (323)
T ss_pred --------------cCCcCCCccccceeeeeccccCc-------------------------ccccceEEecCCCccceE
Confidence 34566777778888877642100 001111222345688899
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+-||++.+|+++.|+.|+||..++..++..|+-|.+.|++++|+| +..++|+++.|++|.+|++
T Consensus 259 IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 259 IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999 6678889999999999987
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=5.2e-17 Score=180.92 Aligned_cols=312 Identities=17% Similarity=0.260 Sum_probs=220.3
Q ss_pred EEccCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC---eEEEEEe--cCCCCeEEEEEcCC----CCEEEEE
Q 000454 238 RVRGHRNAVYCAIFDR-----SGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSN----NALVASA 303 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSp-----DG~~LATGS~DGtIrIWDl~Tg---~~l~tL~--gH~~~VtsLafSPD----G~lLASG 303 (1491)
...+|..+|+.++|.+ .-..+||++. ..|.||..... +.++++. .|......++|+-+ +.+||+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999985 2346666655 56888887533 3444443 37778888999864 3489999
Q ss_pred ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 304 SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 304 S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
+.-|.|+|.|+.++++...+.+|...|..|.|+|+.. ++|++++.|..|++|++++..++..+-
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfG-------------- 175 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFG-------------- 175 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEec--------------
Confidence 9999999999999999999999999999999999965 589999999999999999999887762
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC------CCC-------------ceeeeecCCCC
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD------QPN-------------HEIDVLSGHEN 444 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~------~~~-------------~~i~~l~gH~~ 444 (1491)
...+|...|.++.|+++|.+|++++.|..|.+|++......... .+. .......-|..
T Consensus 176 ---G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn 252 (385)
T KOG1034|consen 176 ---GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN 252 (385)
T ss_pred ---ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc
Confidence 23569999999999999999999999999999999743211000 000 00001122333
Q ss_pred CceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCC
Q 000454 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1491)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~ 524 (1491)
.|.|+.|- ++++++-|.++.|..|.+..-. ..++ .+.+
T Consensus 253 yVDCvrw~----------------------------gd~ilSkscenaI~~w~pgkl~---------e~~~-~vkp---- 290 (385)
T KOG1034|consen 253 YVDCVRWF----------------------------GDFILSKSCENAIVCWKPGKLE---------ESIH-NVKP---- 290 (385)
T ss_pred hHHHHHHH----------------------------hhheeecccCceEEEEecchhh---------hhhh-ccCC----
Confidence 34443333 3689999999999999763110 0000 0000
Q ss_pred CCCCCCCCceeccCCCCCeeE--EEEcCCCCEEEEEeccceEEEEECCCCceE--EEEeC--CCCCeEEEEEecCCCcEE
Q 000454 525 PQPPRGGPRQRILPTPRGVNM--IVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTG--HTESTYVLDVHPFNPRIA 598 (1491)
Q Consensus 525 ~~~~~~~~~~~l~~h~~~Vts--VafSPDG~~LaSGs~DG~IrIWDl~tgkll--~tL~g--Hs~~VtsLafSPdd~~lL 598 (1491)
.........++.-....|.- .+|.|-+++||.|...|.|++||+....+. .++.. -...|...+|+. ++.+|
T Consensus 291 -~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~l 368 (385)
T KOG1034|consen 291 -PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSIL 368 (385)
T ss_pred -CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEE
Confidence 00011112222233334444 466777899999999999999999876653 23322 234688999998 77888
Q ss_pred EEEeCCCcEEEEeCC
Q 000454 599 MSAGYDGKTIVWDIW 613 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~ 613 (1491)
+....|++|.-||..
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 889999999999863
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=3.6e-17 Score=194.30 Aligned_cols=264 Identities=21% Similarity=0.357 Sum_probs=189.1
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSNN-ALVASASNDCIIRVW 312 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t--L~gH~~~VtsLafSPDG-~lLASGS~DGtIrVW 312 (1491)
++....|.++|..++|-|-...|++++.|.+|++||+.+++++.. +.||.+.|.++||.|.+ ..+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 456678999999999999667899999999999999999998877 88999999999999965 488999999999999
Q ss_pred ECCCCC--------------------c-------eeeeccCCCceEE---EEecCCCCceEEEEEEeC-CCcEEEEccCC
Q 000454 313 RLPDGL--------------------P-------ISVLRGHTAAVTA---IAFSPRPGSVYQLLSSSD-DGTCRIWDARY 361 (1491)
Q Consensus 313 Dl~tgk--------------------~-------i~~L~gHs~~Vts---LaFSPdg~s~~~LaSgS~-DGtVrIWDl~t 361 (1491)
|+.-.. + +.....+...|.+ +.+..|.. .||+++. |+.|+|||++.
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~---tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES---TLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc---eeeeccCCCcceEEEeecc
Confidence 984211 1 1112234444444 44445554 7888887 99999999997
Q ss_pred CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 362 g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
........- . +... ..........+.++.....|.+|++.+.|+.|++|++..... .++..+.+
T Consensus 250 ~~~~~r~ep-~------~~~~--~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~-------sP~~~~sg 313 (720)
T KOG0321|consen 250 NYTAYRQEP-R------GSDK--YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI-------SPVAEFSG 313 (720)
T ss_pred cccccccCC-C------cccC--ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc-------CchhhccC
Confidence 765443210 0 0000 001112345678888888899999988999999999976332 23333333
Q ss_pred CCCCceEE--EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCC
Q 000454 442 HENDVNYV--QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1491)
Q Consensus 442 H~~~V~sV--afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~ 519 (1491)
+...-..+ ..+|+ +.++++|+.|..+.+|.+.+..
T Consensus 314 ~~~~sf~vks~lSpd--------------------------~~~l~SgSsd~~ayiw~vs~~e----------------- 350 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPD--------------------------DCSLLSGSSDEQAYIWVVSSPE----------------- 350 (720)
T ss_pred cccceeeeeeecCCC--------------------------CceEeccCCCcceeeeeecCcc-----------------
Confidence 33221111 12333 3689999999999999888633
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEeccceEEEEECCCC
Q 000454 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADG 572 (1491)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~IrIWDl~tg 572 (1491)
.+...+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 351 -----------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 -----------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 2344567889999999998853 34777799999999999654
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.9e-17 Score=190.49 Aligned_cols=248 Identities=20% Similarity=0.313 Sum_probs=189.5
Q ss_pred EEEEEcC-------CCCEEEEEeCCCeEEEEECCCC---eEEEE------------------EecCCCCeEEEEEcCC-C
Q 000454 247 YCAIFDR-------SGRYVITGSDDRLVKIWSMETA---YCLAS------------------CRGHEGDITDLAVSSN-N 297 (1491)
Q Consensus 247 t~VaFSp-------DG~~LATGS~DGtIrIWDl~Tg---~~l~t------------------L~gH~~~VtsLafSPD-G 297 (1491)
.|++|.. .|+|+|.|..|..|.|||+.-. .+..+ ..+|+..|.+|+|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 3789999999999999998521 11111 2369999999999875 4
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
+.||+||.|.+|++||+.+|++..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+.........
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~w-------- 326 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEW-------- 326 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceE--------
Confidence 5899999999999999999999999999999999999999865 489999999999999998533222211
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
...+.|-.++|.|.. ..+++++.||+|+-+|++.. .+++..+.+|.+.|.+|++++..
T Consensus 327 ------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vwt~~AHd~~ISgl~~n~~~- 385 (463)
T KOG0270|consen 327 ------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVWTLKAHDDEISGLSVNIQT- 385 (463)
T ss_pred ------------EeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCceeEEEeccCCcceEEecCCC-
Confidence 135678999999965 56788889999999999863 47888999999999999998754
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
+..+++++.|+.+++|++....... ...-
T Consensus 386 ------------------------p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------v~~~ 414 (463)
T KOG0270|consen 386 ------------------------PGLLSTASTDKVVKLWKFDVDSPKS---------------------------VKEH 414 (463)
T ss_pred ------------------------CcceeeccccceEEEEeecCCCCcc---------------------------cccc
Confidence 4689999999999999987532100 0000
Q ss_pred cCCCCCeeEEEEcCCCCE-EEEEeccceEEEEECCCCceEE
Q 000454 537 LPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAADGSLVH 576 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~-LaSGs~DG~IrIWDl~tgkll~ 576 (1491)
.-.-+...|+++.|+-.+ ++.|+..+.++|||+.+...+.
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 000112566777777654 6667788889999998765543
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=3.1e-17 Score=185.25 Aligned_cols=215 Identities=19% Similarity=0.303 Sum_probs=176.5
Q ss_pred EEEccCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCC----------------CeEEEEEecCCCCeEEEEEcCCC-
Q 000454 237 KRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSMET----------------AYCLASCRGHEGDITDLAVSSNN- 297 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG--~~LATGS~DGtIrIWDl~T----------------g~~l~tL~gH~~~VtsLafSPDG- 297 (1491)
...-+|.+.|..+..++-| .+.|+-+..|.|.||++.. .+.+.++.+|...=+.|+|||--
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445688888888888865 4556667899999999842 35678889999999999999932
Q ss_pred CEEEEEECCCeEEEEECCCCCc---eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 298 ALVASASNDCIIRVWRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~---i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
..|++|..-+.|++|...+|.- ...|.+|+..|-.++|+|... ..|++|+.||+|+|||++.+.....+..
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~--~vfaScS~DgsIrIWDiRs~~~~~~~~~---- 298 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED--GVFASCSCDGSIRIWDIRSGPKKAAVST---- 298 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--ceEEeeecCceEEEEEecCCCccceeEe----
Confidence 2588888889999999888742 234667999999999999876 3899999999999999998854444422
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
..|...|+.|.|+..-.+||+|+.||+++|||++.- +...++..+..|..+|++|.|+|.
T Consensus 299 --------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 299 --------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------KSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred --------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------cCCCcceeEEeccCCeeEEEeccc
Confidence 457889999999998889999999999999999863 335778899999999999999986
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
- ...|++++.|.+|.|||+....
T Consensus 359 e-------------------------~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 359 E-------------------------DSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred c-------------------------CceEEeccCCCcEEEEEeeccC
Confidence 4 3579999999999999998543
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.1e-17 Score=183.47 Aligned_cols=305 Identities=15% Similarity=0.229 Sum_probs=218.3
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------AYCLASCR-GHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------g~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
.+.+.+|.+.|.+|.|+.++++||+|++|..++||++.. .+++.... .|...|.|++|...+++|.+|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 356889999999999999999999999999999999853 34444433 36689999999999999999999999
Q ss_pred EEEEECCCCCceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.+.|+++.+.+.++.. ..+.|+.+..+|..+ .|++.+.+|.|.+||++.........++
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--------------- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVLP--------------- 190 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc---eEEEEecCceEEEEeccCCCCCCceeee---------------
Confidence 99999999988877752 235999999999976 8999999999999999876533222221
Q ss_pred CCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 387 SAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 387 s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.........+.|+|. ..+|++.+..+-+-|||++........ ......+......-.++.|+|.|
T Consensus 191 --AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~--~~~~~~L~~~~~~~M~~~~~~~G---------- 256 (609)
T KOG4227|consen 191 --ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ--RSMFKGLPQENTEWMGSLWSPSG---------- 256 (609)
T ss_pred --cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh--hhccccCcccchhhhheeeCCCC----------
Confidence 123455778899995 468888888999999999864321000 00111122222234567788876
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
+.|++.-....-.+||+.+.++...... ..+.+ ......+.+
T Consensus 257 ----------------~Q~msiRR~~~P~~~D~~S~R~~V~k~D----------------~N~~G------Y~N~~T~KS 298 (609)
T KOG4227|consen 257 ----------------NQFMSIRRGKCPLYFDFISQRCFVLKSD----------------HNPNG------YCNIKTIKS 298 (609)
T ss_pred ----------------CeehhhhccCCCEEeeeecccceeEecc----------------CCCCc------ceeeeeeee
Confidence 4555555555556667665331110000 00000 011234667
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCC----------C-------------ceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAAD----------G-------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~t----------g-------------kll~tL~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
++|--| ..+++|+.+-.|++|.+.. | +.+..|+||...++.|.|+| ...+|++.|
T Consensus 299 ~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSG 376 (609)
T KOG4227|consen 299 MTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSG 376 (609)
T ss_pred eeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccc
Confidence 788655 4599999999999998742 1 23457899999999999999 678888999
Q ss_pred CCCcEEEEeC
Q 000454 603 YDGKTIVWDI 612 (1491)
Q Consensus 603 ~DGtIrIWDl 612 (1491)
....++||.-
T Consensus 377 VE~~~KlWS~ 386 (609)
T KOG4227|consen 377 VENSFKLWSD 386 (609)
T ss_pred hhhheecccc
Confidence 9999999975
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.75 E-value=8.1e-17 Score=186.02 Aligned_cols=284 Identities=14% Similarity=0.179 Sum_probs=208.0
Q ss_pred CCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCC---c--eeeeccCCCceEEEEe
Q 000454 264 DRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNAL-VASASNDCIIRVWRLPDGL---P--ISVLRGHTAAVTAIAF 335 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH--~~~VtsLafSPDG~l-LASGS~DGtIrVWDl~tgk---~--i~~L~gHs~~VtsLaF 335 (1491)
...++|||+........+-.| ...|.++.|+....+ +|+.+.|..|++|.- .|+ . +..+.+. .-.|++.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd--~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGD--NAFCVAC 87 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecc-cCCCCccceeeccccc--hHHHHhh
Confidence 346999999876655544433 234899999987642 333455788999974 332 1 1122222 3334444
Q ss_pred cCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCce
Q 000454 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1491)
Q Consensus 336 SPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~ 415 (1491)
....- ++++|+..++|+|||++...+...+ ..|...|+++.++-...+||+++..|.
T Consensus 88 ~s~S~---y~~sgG~~~~Vkiwdl~~kl~hr~l--------------------kdh~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 88 ASQSL---YEISGGQSGCVKIWDLRAKLIHRFL--------------------KDHQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred hhcce---eeeccCcCceeeehhhHHHHHhhhc--------------------cCCcceeEEEEecCCcceeEEeccCCc
Confidence 33333 8999999999999999844433332 458899999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
|.|..+.++. ....+... ...|.-+.|++.. ...|.+++.+|.|.
T Consensus 145 iiih~~~t~~---------~tt~f~~~sgqsvRll~ys~sk-------------------------r~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 145 IIIHGTKTKQ---------KTTTFTIDSGQSVRLLRYSPSK-------------------------RFLLSIASDKGAVT 190 (673)
T ss_pred EEEEecccCc---------cccceecCCCCeEEEeeccccc-------------------------ceeeEeeccCCeEE
Confidence 9999987642 22233322 3345678888753 34788999999999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccceEEEEECCCCc
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~IrIWDl~tgk 573 (1491)
+||+..... ...-...|..+...|||+|... +|++.+.|..|++||+...+
T Consensus 191 lwDv~g~sp----------------------------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 191 LWDVQGMSP----------------------------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred EEeccCCCc----------------------------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 999986331 1122345778888999999665 57778999999999998877
Q ss_pred eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeeCCcceEEEEEcCCC
Q 000454 574 LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDG 637 (1491)
Q Consensus 574 ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-Gk~l~~l~~h~~~VtslafSPDG 637 (1491)
....+. ...+...|+|.+ ++.+|+.|...|.|..||+.. ..++.++..|...|++++|-|--
T Consensus 243 s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 243 STDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccceee-ecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 776665 355788999999 889999999999999999975 46899999999999999997765
No 165
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.2e-15 Score=185.78 Aligned_cols=438 Identities=17% Similarity=0.216 Sum_probs=280.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN---ALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG---~lLASGS~DGtIrVWDl~ 315 (1491)
|-|-...-....||+|+++++.... ..|+||.+.||.++..+.+|..+++.+.+.|.. .++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 4444444455679999999988754 689999999999999999999999999998854 478899999999999999
Q ss_pred CCCceeeeccCCCceEEEEecCC----CC-------ceEEEEEEeC--CCcEEEEccCCC-----CccceeecC-----C
Q 000454 316 DGLPISVLRGHTAAVTAIAFSPR----PG-------SVYQLLSSSD--DGTCRIWDARYS-----QFSPRIYIP-----R 372 (1491)
Q Consensus 316 tgk~i~~L~gHs~~VtsLaFSPd----g~-------s~~~LaSgS~--DGtVrIWDl~tg-----~~~~~i~~~-----~ 372 (1491)
.+..+.++..+ ..|..+.+.|. .. ....+.+.+. .+.++-+.+.+. ........+ .
T Consensus 91 ~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 99888877633 23333333221 00 0001111111 111111111100 000000000 0
Q ss_pred CCCccc----------------CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 373 PSDAVA----------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 373 ~~~~~~----------------g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
+..... ............|...++|.+++|+++++|+|..||.|.+|.--.. .......
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----SDDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----ccccccc
Confidence 000000 0111222233446666899999999999999999999999976321 1112345
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
..+.-|...|.++.|+++| .+|++|+..|.+.+|.+.+++
T Consensus 245 t~lHWH~~~V~~L~fS~~G--------------------------~~LlSGG~E~VLv~Wq~~T~~-------------- 284 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDG--------------------------AYLLSGGREGVLVLWQLETGK-------------- 284 (792)
T ss_pred eEEEecccccceeEEecCC--------------------------ceEeecccceEEEEEeecCCC--------------
Confidence 6677899999999999987 699999999999999888743
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-----------CCCe
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-----------TEST 585 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-----------s~~V 585 (1491)
.+-+..-...|..+.+|||+.+.+....|..|.+..+.+.....++.|- .+-.
T Consensus 285 ----------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 285 ----------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred ----------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 1112223567899999999999999999999999988765554444332 3346
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----------CCcceEEEEEcCCCCEEEEEe--------CC
Q 000454 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-----------SRFRLVDGKFSPDGASIILSD--------DV 646 (1491)
Q Consensus 586 tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~-----------h~~~VtslafSPDG~~LAsgs--------~D 646 (1491)
+.+++.| ....++-.+..|.|.+||+.+...+..+.. +.-.++.++++-.|.+++++. .|
T Consensus 349 t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 7788888 556666789999999999988877665542 123577888888999999873 23
Q ss_pred --CcEEEEECCCCcccccc-----------c-ceeeecCCCc-ceEEccCCCEEEccccccCccccCCCccccccCCCCC
Q 000454 647 --GQLYILNTGQGESQKDA-----------K-YDQFFLGDYR-PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 711 (1491)
Q Consensus 647 --G~I~IWdl~tG~~~~~~-----------~-~~~~fs~D~r-~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p 711 (1491)
-.+++|-......-..+ . ...++.+.-. ..++...+..+ .+|-+++..-.. +..
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~--------KiW~~~~~~n~~---k~~ 496 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF--------KIWVFTDDSNIY---KKS 496 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeE--------EEEEEecccccC---cCc
Confidence 35678877544321111 1 1222333322 33444344433 246543322111 111
Q ss_pred Cc----chhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCc
Q 000454 712 EP----YQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1491)
Q Consensus 712 ~~----~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~ 757 (1491)
.. .++.+ +.....+++||.||..||++ .+..+.+|+..+.
T Consensus 497 s~W~c~~i~sy--~k~~i~a~~fs~dGslla~s----~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 497 SNWTCKAIGSY--HKTPITALCFSQDGSLLAVS----FDDTITIWDYDTK 540 (792)
T ss_pred cceEEeeeecc--ccCcccchhhcCCCcEEEEe----cCCEEEEecCCCh
Confidence 11 11112 45567779999999999995 7889999999764
No 166
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=6e-17 Score=177.65 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=194.1
Q ss_pred EccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEEC
Q 000454 239 VRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN---NALVASASNDCIIRVWRL 314 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD---G~lLASGS~DGtIrVWDl 314 (1491)
-.+|.-.|..+.|-| |.-++.+++-|.+++|||+.|.+....|+ ..+.|.+-++||- -.+||+|..+-.|++-|+
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 347889999999999 66688899999999999999998888877 5778999999983 448888999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC-CccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg-~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
.+|.+.+++.||.+.|.++.|+|... +.|++|+.||.|++||++.. .+...+.... +...........|.+
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e--~vLatgsaDg~irlWDiRrasgcf~~lD~hn------~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSE--WVLATGSADGAIRLWDIRRASGCFRVLDQHN------TKRPPILKTNTAHYG 247 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCce--eEEEecCCCceEEEEEeecccceeEEeeccc------CccCccccccccccc
Confidence 99999999999999999999999876 68999999999999999865 3333332111 111222233556889
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
.|..++|..+|.++++.+.|..+++|+..++....... +..+..-..|- .+. +. +.+
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~-g~~~~n~~~~~-~~~-~~-~~~------------------- 304 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF-GPIIHNQTTSF-AVH-IQ-SMD------------------- 304 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCccccccc-ccccccccccc-eEE-Ee-ecc-------------------
Confidence 99999999999999999999999999997764321110 01111000000 000 11 111
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
...|+-.-.++.+.++.+-.+ ..+..+..|...|.|.++-|+-+
T Consensus 305 -------s~vfv~~p~~~~lall~~~sg-----------------------------s~ir~l~~h~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 305 -------SDVFVLFPNDGSLALLNLLEG-----------------------------SFVRRLSTHLKRINCAAYRPDFE 348 (397)
T ss_pred -------cceEEEEecCCeEEEEEccCc-----------------------------eEEEeeecccceeeEEeecCchh
Confidence 124444445567777665532 23444556777799999999999
Q ss_pred EEEEEeccceEEEEEC
Q 000454 554 FVLAAIMDCRICVWNA 569 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl 569 (1491)
...+|..|+.|+.|-.
T Consensus 349 ~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhccccCCccccccc
Confidence 9999999999999976
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.2e-17 Score=209.91 Aligned_cols=293 Identities=18% Similarity=0.305 Sum_probs=216.4
Q ss_pred EEEEcCCCC-EEEEE----------ECCCeEEEEECC--CC----CceeeeccCCCceEEEEecCCCCce-EEEEEEeCC
Q 000454 290 DLAVSSNNA-LVASA----------SNDCIIRVWRLP--DG----LPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDD 351 (1491)
Q Consensus 290 sLafSPDG~-lLASG----------S~DGtIrVWDl~--tg----k~i~~L~gHs~~VtsLaFSPdg~s~-~~LaSgS~D 351 (1491)
.++|+|++. +||+| +.+.++-||.+. +. +++..+. -....+.++|.+.+... -+|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888886 56655 234456666543 22 2333333 34567899999877521 148889999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
|.|.+||...-.. +...........|.+.|..+.|++.. ++||+|+.+|.|.|||+.+.......
T Consensus 90 G~I~ly~p~~~~~--------------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA--------------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred CceEEecchhhcc--------------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence 9999999864200 11111123345689999999999965 59999999999999999764321111
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
. -......|.+++|.... ...|++++.+|.+.|||++..+..
T Consensus 156 ~-------~~~~~~eI~~lsWNrkv-------------------------qhILAS~s~sg~~~iWDlr~~~pi------ 197 (1049)
T KOG0307|consen 156 G-------SQAPPSEIKCLSWNRKV-------------------------SHILASGSPSGRAVIWDLRKKKPI------ 197 (1049)
T ss_pred C-------CCCCcccceEeccchhh-------------------------hHHhhccCCCCCceeccccCCCcc------
Confidence 0 22346789999998643 357999999999999999964321
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCC--CCCeeEEEEcCCCC-EEEEEeccc---eEEEEECCC-CceEEEEeCCCC
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLDNR-FVLAAIMDC---RICVWNAAD-GSLVHSLTGHTE 583 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h--~~~VtsVafSPDG~-~LaSGs~DG---~IrIWDl~t-gkll~tL~gHs~ 583 (1491)
..+..+ ...+..++|+|++. .|++++.|. .|.+||++. ..+++++.+|..
T Consensus 198 -----------------------i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 198 -----------------------IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred -----------------------cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 111111 23477899999875 466666543 599999875 457788899999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 000454 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 584 ~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~-~LAsgs~DG~I~IWdl~tG~ 658 (1491)
.|.+|.|++.|.++|+|++.|+.|.+|+..+|+.+..+......++.+.|+|... .|++++-+|.|.|+.+..+.
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999999999999999999999999999998788899999999776 77888999999999986654
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=7.6e-17 Score=186.24 Aligned_cols=265 Identities=15% Similarity=0.198 Sum_probs=205.3
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 245 AVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 245 ~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~T--g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
.|..+.|+.... .+|+.+.|..|++|.-.. ++....-+.....-.|++......|+++|+..++|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 389999998764 223445688999997532 22222111112244555555556899999999999999999777888
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
.+++|...|++|.+.-... +|++++..|.|.|..+.++.....+.. +.+..|.-+.|+
T Consensus 116 ~lkdh~stvt~v~YN~~De---yiAsvs~gGdiiih~~~t~~~tt~f~~-------------------~sgqsvRll~ys 173 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDE---YIASVSDGGDIIIHGTKTKQKTTTFTI-------------------DSGQSVRLLRYS 173 (673)
T ss_pred hccCCcceeEEEEecCCcc---eeEEeccCCcEEEEecccCccccceec-------------------CCCCeEEEeecc
Confidence 8999999999999988776 999999999999999988876555532 234456789999
Q ss_pred CCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 402 ANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 402 PDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
+..+ +|.+++.+|.|.+||+... .........|..+...|+|+|..
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~g~--------sp~~~~~~~HsAP~~gicfspsn------------------------- 220 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQGM--------SPIFHASEAHSAPCRGICFSPSN------------------------- 220 (673)
T ss_pred cccceeeEeeccCCeEEEEeccCC--------CcccchhhhccCCcCcceecCCc-------------------------
Confidence 9766 5667899999999999642 23455678899999999999974
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
...|++.+.|..|.+||+...+.. ..+....+...++|+++|.+|++|..
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~------------------------------~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQAST------------------------------DRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cceEEEecccceEEEeeccccccc------------------------------ceeeecCCcceeeecCCceEEEeecC
Confidence 358999999999999999864311 11223456788999999999999999
Q ss_pred cceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCC
Q 000454 561 DCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 561 DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~ 595 (1491)
.|.|+.||++. ..++.++..|...|++|+|-| .+
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeee-cc
Confidence 99999999975 568889999999999999988 44
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.4e-16 Score=180.33 Aligned_cols=306 Identities=16% Similarity=0.237 Sum_probs=210.6
Q ss_pred EEEEEcCCCCEEEEEECC---Ce--EEEEECCCCCceeeeccCC----CceEEEEecCC----CCceEEEEEEeCCCcEE
Q 000454 289 TDLAVSSNNALVASASND---CI--IRVWRLPDGLPISVLRGHT----AAVTAIAFSPR----PGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 289 tsLafSPDG~lLASGS~D---Gt--IrVWDl~tgk~i~~L~gHs----~~VtsLaFSPd----g~s~~~LaSgS~DGtVr 355 (1491)
-.+.+-|..++|+++-.+ .. |+||+- ... ..+-.|. ..-.|++|... +...+++|.|+.|..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcC--CCc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 345566766677776443 22 445542 221 1122222 23356666533 22235999999999999
Q ss_pred EEccCCCCc-cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 356 IWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 356 IWDl~tg~~-~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
|||+.-... .+.+.+...................+|...|..++|+.. .+.||+|+.|.+|.+||+.++
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------- 276 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------- 276 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC---------
Confidence 999874322 122222111111111111223344568888999999875 468999999999999999874
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
++...+..|.+.|.++.|+|.. +..|++|+.|+++.+.|.+.....
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~-------------------------p~~LLsGs~D~~V~l~D~R~~~~s--------- 322 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYE-------------------------PSVLLSGSYDGTVALKDCRDPSNS--------- 322 (463)
T ss_pred CcceehhhcCCceeEEEecCCC-------------------------ceEEEeccccceEEeeeccCcccc---------
Confidence 4566777899999999999865 468999999999999999852211
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE-EEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEe
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~-LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafS 591 (1491)
.......+.|-.++|.|.... ++++..||+|+-+|++. ++++.++.+|.++|.+|+++
T Consensus 323 --------------------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n 382 (463)
T KOG0270|consen 323 --------------------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN 382 (463)
T ss_pred --------------------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEec
Confidence 111223456888999987654 66677999999999987 49999999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCce--EEEEeeCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccc
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEGIP--IRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tGk~--l~~l~~h~~~VtslafSPDG~-~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
+..+.+++|++.|+.|++|++..-.+ +..-...-+...|+++.|+-. +||+|+..+.++|||+.++...
T Consensus 383 ~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 383 IQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 98899999999999999999864433 221111122355778888754 5677888889999999877543
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=9.2e-16 Score=170.50 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=204.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCC--------Ce----EEEEEe-cCCCCeEEEEEc-------CCCCEEEEEECC
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMET--------AY----CLASCR-GHEGDITDLAVS-------SNNALVASASND 306 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~T--------g~----~l~tL~-gH~~~VtsLafS-------PDG~lLASGS~D 306 (1491)
..+.|+|||..|++-+.|..+.+|++.. +. ...+++ .-...|.+.+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3578999999999999999999999842 11 111222 123567777775 577799999999
Q ss_pred CeEEEEECCCCCceeeecc--CCC---ceEEEEecCCCCceEEEEEEeCCCcEEEEcc-CCCCccceeecCCCCCcccCC
Q 000454 307 CIIRVWRLPDGLPISVLRG--HTA---AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~g--Hs~---~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl-~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
.-|.+||.-+|+....+.+ |.. ...+++|+|||. +|++ +....|+++|+ +.|..-......
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~--------- 199 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTV--------- 199 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhh---------
Confidence 9999999999998887764 332 457899999997 5554 55678999999 555433322110
Q ss_pred CCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.....+..+-|.|++|+|. ...+++|+....+-||.-.. ..++..+-+|.+.|+.++|.++|
T Consensus 200 ----~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---------~~pl~llggh~gGvThL~~~edG---- 262 (406)
T KOG2919|consen 200 ----TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---------RRPLQLLGGHGGGVTHLQWCEDG---- 262 (406)
T ss_pred ----hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------CCceeeecccCCCeeeEEeccCc----
Confidence 0112345677899999995 45899999888888887654 45677888999999999999997
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeC-CCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
+.|++|+. |-.|..||++..+ .++..+..
T Consensus 263 ----------------------n~lfsGaRk~dkIl~WDiR~~~----------------------------~pv~~L~r 292 (406)
T KOG2919|consen 263 ----------------------NKLFSGARKDDKILCWDIRYSR----------------------------DPVYALER 292 (406)
T ss_pred ----------------------CeecccccCCCeEEEEeehhcc----------------------------chhhhhhh
Confidence 57777765 7889999999633 11112222
Q ss_pred CCC---CeeEEEEcCCCCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC
Q 000454 539 TPR---GVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1491)
Q Consensus 539 h~~---~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D 604 (1491)
|.. .-.-+...|+|++|++|+.||.|++||+++ |..+..+..|...|+.++++|. --++++++..
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpilatssGq 361 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPILATSSGQ 361 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-cceeeeccCc
Confidence 221 112355678999999999999999999998 7888889999999999999994 4566666543
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=2.5e-16 Score=179.83 Aligned_cols=297 Identities=21% Similarity=0.231 Sum_probs=207.1
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--------C--------CeEEEEEecCCCCeEEEEEc
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--------T--------AYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~--------T--------g~~l~tL~gH~~~VtsLafS 294 (1491)
.+.+.+..|.+|..+|++|.|+|+|..||+|+++|.|.+|-.. + ....+.+++|...|..++|+
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence 3556778899999999999999999999999999999999865 3 34566788999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC-C
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR-P 373 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~-~ 373 (1491)
|++.++++++.|..+++||+..|..+..+..|...|..++|.|-++ ++++-+.|...+.+.+...+.+..+.... +
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 9999999999999999999999999999999999999999999987 89999999877877776555444332100 0
Q ss_pred CCcccCCCCCC--CCCCCCCCcceEEEEECCCCCEEEEecC----Cc-----eEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 374 SDAVAGRNMAP--SSSAGPQSHQIFCCAFNANGTVFVTGSS----DT-----LARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 374 ~~~~~g~~~~~--~~s~~~h~~~V~slafSPDG~~LasGs~----DG-----~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
........... .........-...++|+|+|.+|++... .+ ..++|+-. ...+++..+.+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--------~l~rP~~~lp~~ 281 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--------DLKRPAARLPSP 281 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--------cccCceeecCCC
Confidence 00000000000 0001112233557899999999988642 22 22344332 124456667777
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
...+..+.|+|-....+ ....... .+. .....++.......+.+||..+.....
T Consensus 282 ~k~~lavr~~pVy~elr----p~~~~~~--~~~---lpyrlvfaiAt~~svyvydtq~~~P~~----------------- 335 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELR----PLSSEKF--LFV---LPYRLVFAIATKNSVYVYDTQTLEPLA----------------- 335 (434)
T ss_pred CcceEEEEeeeeEEEec----ccccccc--ccc---cccceEEEEeecceEEEeccccccceE-----------------
Confidence 77888888887532111 1111100 011 112345555666789999988633211
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll 575 (1491)
....-|-..|+.++|++||.+|+..+.||...+..+...++-
T Consensus 336 -----------~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 336 -----------VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -----------EEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 112236678999999999999999999998888777665543
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=4.1e-16 Score=173.22 Aligned_cols=286 Identities=19% Similarity=0.241 Sum_probs=207.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCC-------Cc-----eeeec-cCCCceEEEEecCCC----CceEEEEEEeC
Q 000454 288 ITDLAVSSNNALVASASNDCIIRVWRLPDG-------LP-----ISVLR-GHTAAVTAIAFSPRP----GSVYQLLSSSD 350 (1491)
Q Consensus 288 VtsLafSPDG~lLASGS~DGtIrVWDl~tg-------k~-----i~~L~-gHs~~VtsLaFSPdg----~s~~~LaSgS~ 350 (1491)
...+.|+|||..|++-+.|..+.+|++... .. ...++ .....|+..+|-+.- ....++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 446789999999999999999999998531 11 11111 234578888886321 12238999999
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+.-|++||.-+|+....+......+ .-....+++|+|||..|++|. ...|+|||+..+......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~d---------------e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQD---------------EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccccccccchhhhhhHH---------------hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence 9999999999998766553211111 112356899999999999876 578999999543322111
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
.+. ....-.+..+.|.+++|+|.. ...++.|+....+-|+.-..
T Consensus 196 y~t-~~~~k~gq~giisc~a~sP~~-------------------------~~~~a~gsY~q~~giy~~~~---------- 239 (406)
T KOG2919|consen 196 YTT-VTKGKFGQKGIISCFAFSPMD-------------------------SKTLAVGSYGQRVGIYNDDG---------- 239 (406)
T ss_pred hhh-hhcccccccceeeeeeccCCC-------------------------CcceeeecccceeeeEecCC----------
Confidence 110 111123446788899999864 24788888888887775443
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec-cceEEEEECCC-CceEEEEeCCCC-CeEE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD-GSLVHSLTGHTE-STYV 587 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~IrIWDl~t-gkll~tL~gHs~-~Vts 587 (1491)
..++..+.+|.++|+.++|.++|..|++|.. |-.|..||++. +.++..|..|.+ .-..
T Consensus 240 -------------------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 240 -------------------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQR 300 (406)
T ss_pred -------------------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccce
Confidence 2456667789999999999999999999874 67899999975 566777877766 3334
Q ss_pred EEE--ecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeeCCcceEEEEEcCCCCEEEEEeC
Q 000454 588 LDV--HPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDD 645 (1491)
Q Consensus 588 Laf--SPdd~~lLaSgS~DGtIrIWDl~t-Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~ 645 (1491)
|-| .| .+.+|++|+.||.|++||+.+ |..+..+..+..-|..+++.|--.++|+++.
T Consensus 301 I~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 301 ILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred EEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 444 45 668999999999999999998 7778888888889999999999877777765
No 173
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=9.2e-17 Score=186.20 Aligned_cols=331 Identities=18% Similarity=0.308 Sum_probs=240.8
Q ss_pred cccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcC--CCC
Q 000454 222 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNA 298 (1491)
Q Consensus 222 ~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSP--DG~ 298 (1491)
.+......++.+.+...|.+|.+.|..|.|...|..|++||+|.+|.+||+..+.....+. ||...|....|-| +..
T Consensus 121 ~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 121 EACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred HhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc
Confidence 3333445678888999999999999999999999999999999999999999998877765 8999999999988 456
Q ss_pred EEEEEECCCeEEEEECCC-CCc--eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 299 LVASASNDCIIRVWRLPD-GLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 299 lLASGS~DGtIrVWDl~t-gk~--i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
.|++++.||.|++=.+.. +.+ ...+..|.++|.-++.-|+.. +.|++++.|+.|.-+|++++.....+.....
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~-- 276 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREA-- 276 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeecc--
Confidence 899999999999987643 322 345667999999999999865 5799999999999999988765544431110
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec------CCCCCceE
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVNY 448 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~------gH~~~V~s 448 (1491)
.....-....++..|-.. .+++|+.|..+++||.+........ ..+..+. ...-.|++
T Consensus 277 ------------~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 277 ------------DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---GVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred ------------CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc---chhhhcCCccccccCccccee
Confidence 001123567888988654 8999999999999998764321111 1122222 22346888
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
++|+.++ .-|++.-.|-.|+++...-+. + ..+.+..+.
T Consensus 342 l~Ysh~~--------------------------sElLaSYnDe~IYLF~~~~~~--G--------------~~p~~~s~~ 379 (559)
T KOG1334|consen 342 LVYSHDG--------------------------SELLASYNDEDIYLFNKSMGD--G--------------SEPDPSSPR 379 (559)
T ss_pred EEecCCc--------------------------cceeeeecccceEEecccccc--C--------------CCCCCCcch
Confidence 8888664 356666677778888332211 0 000000000
Q ss_pred CCCCceeccCCCC--CeeEEE-EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 529 RGGPRQRILPTPR--GVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 529 ~~~~~~~l~~h~~--~VtsVa-fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
.......+.+|.. .|..+- |-|...|+++|+..|.|.||+-.+++++..+.+....|+||.-||.. -+||++|-|.
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-PvLAsSGid~ 458 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-PVLASSGIDH 458 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC-chhhccCCcc
Confidence 0111122455543 355554 57888999999999999999999999999998888899999999955 4778999999
Q ss_pred cEEEEeCCC
Q 000454 606 KTIVWDIWE 614 (1491)
Q Consensus 606 tIrIWDl~t 614 (1491)
-|+||-..+
T Consensus 459 DVKIWTP~~ 467 (559)
T KOG1334|consen 459 DVKIWTPLT 467 (559)
T ss_pred ceeeecCCc
Confidence 999998633
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.6e-16 Score=187.45 Aligned_cols=271 Identities=23% Similarity=0.283 Sum_probs=196.3
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--------AYCLASCRGHEGDITDLAVSSNNALVASA 303 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T--------g~~l~tL~gH~~~VtsLafSPDG~lLASG 303 (1491)
++.+-.++..|.+.|+.++|.+....|++|+.||+|++|+++. -+.+.+|++|.++|.|+++.+++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 3445558999999999999999999999999999999999932 35788999999999999999999999999
Q ss_pred ECCCeEEEEECCCC----------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 304 SNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 304 S~DGtIrVWDl~tg----------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
+.||+|+.|++... .....+.||++.|+.+++++... .|++++.||+|++|+...... .++..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~---~Llscs~DgTvr~w~~~~~~~-~~f~~--- 435 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD---RLLSCSSDGTVRLWEPTEESP-CTFGE--- 435 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc---ceeeecCCceEEeeccCCcCc-cccCC---
Confidence 99999999976421 23456789999999999999876 899999999999999876553 11110
Q ss_pred CCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEc
Q 000454 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452 (1491)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafS 452 (1491)
....+...++.|-... ..+++ +.....+.+.+.. -+..+.+.
T Consensus 436 ---------------~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~e-------------------v~s~~~~~ 478 (577)
T KOG0642|consen 436 ---------------PKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDME-------------------VVSDLLIF 478 (577)
T ss_pred ---------------ccccCCcceEeeccchhHhhhh---hcccccccchhhh-------------------hhhheeec
Confidence 0112223334432211 11111 1112222221100 00011111
Q ss_pred cCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000454 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1491)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 532 (1491)
+. +.++..
T Consensus 479 ~s---------------------------------~~~~~~--------------------------------------- 486 (577)
T KOG0642|consen 479 ES---------------------------------SASPGP--------------------------------------- 486 (577)
T ss_pred cc---------------------------------cCCCcc---------------------------------------
Confidence 10 000000
Q ss_pred ceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.....++.+.+.|.+.+.+++..|+.|+++|..++.+++....|...++++++.| ++-+|++++.||.|++|.+
T Consensus 487 -----~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 487 -----RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred -----cccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhhc
Confidence 0112466788999999999999999999999999999999999999999999999 7778889999999999999
Q ss_pred CCCceEEEEeeC
Q 000454 613 WEGIPIRIYEIS 624 (1491)
Q Consensus 613 ~tGk~l~~l~~h 624 (1491)
....++.....|
T Consensus 561 d~k~~~~es~~~ 572 (577)
T KOG0642|consen 561 DVKTCVLESTAH 572 (577)
T ss_pred cchheeeccccc
Confidence 877776655443
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=3.2e-16 Score=174.71 Aligned_cols=276 Identities=15% Similarity=0.325 Sum_probs=202.0
Q ss_pred cCCCCEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECC
Q 000454 241 GHRNAVYCAIFDRSG----RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG----~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~ 315 (1491)
.|...-+.++|+-|- .+||.|+.-|.|+|.|+.++++...+.+|...|..|.|.|+. ++|++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 377888999998753 478999999999999999999999999999999999999965 699999999999999999
Q ss_pred CCCceeeec---cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecC-----CCCCc--cc-CCCCCC
Q 000454 316 DGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP-----RPSDA--VA-GRNMAP 384 (1491)
Q Consensus 316 tgk~i~~L~---gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~-----~~~~~--~~-g~~~~~ 384 (1491)
+..++..+. +|.+.|.++.|++++. +|++++.|.+|++|++...++...+... ..... .. ......
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 999999875 7999999999999998 9999999999999999865443322111 00000 00 001111
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCC-----CCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD-----DSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~-----~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
..+..-|...|-|+.|- |.++++-+.++.|..|........ ........+..+......|.-|.|.-+.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---- 317 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---- 317 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH----
Confidence 22445677888888886 578999999999999987321111 0111112333444445566666665332
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
..+.||.|...|.|.+||+...... ......-...
T Consensus 318 --------------------~~~~la~gnq~g~v~vwdL~~~ep~-------------------------~~ttl~~s~~ 352 (385)
T KOG1034|consen 318 --------------------WQKMLALGNQSGKVYVWDLDNNEPP-------------------------KCTTLTHSKS 352 (385)
T ss_pred --------------------HHHHHhhccCCCcEEEEECCCCCCc-------------------------cCceEEeccc
Confidence 1468999999999999999863311 0111111223
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECC
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~ 570 (1491)
...|...+||.||.+|+..+.|++|.-||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4568899999999999999999999999863
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.5e-15 Score=166.74 Aligned_cols=270 Identities=21% Similarity=0.347 Sum_probs=203.2
Q ss_pred CCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCC-CCEEEEEECC-------CeEEEEECCCC---------Cceee
Q 000454 263 DDRLVKIWSMETAY---CLASCRGHEGDITDLAVSSN-NALVASASND-------CIIRVWRLPDG---------LPISV 322 (1491)
Q Consensus 263 ~DGtIrIWDl~Tg~---~l~tL~gH~~~VtsLafSPD-G~lLASGS~D-------GtIrVWDl~tg---------k~i~~ 322 (1491)
.|+.|.+.++..+. .-..|..|.+.|+.|+-+|- .++|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 36788887776542 23456778999999999994 4566666542 24789988643 33444
Q ss_pred ec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc-ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 323 LR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 323 L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~-~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
+. .+-+.|.|+.|.|++. .|++-. |..|.+|++..+..+ ..+.. .....+....++-+|
T Consensus 118 Ldteavg~i~cvew~Pns~---klasm~-dn~i~l~~l~ess~~vaev~s---------------s~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD---KLASMD-DNNIVLWSLDESSKIVAEVLS---------------SESAEMRHSFTSGAW 178 (370)
T ss_pred CCHHHhCceeeEEEcCCCC---eeEEec-cCceEEEEcccCcchheeecc---------------cccccccceeccccc
Confidence 54 4567899999999886 666665 788999999877652 22211 111225667888899
Q ss_pred CC--CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NA--NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SP--DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+| +|+.+++.+ |+++..||+++.+. ....-.+|...|..+.|.|+.
T Consensus 179 spHHdgnqv~tt~-d~tl~~~D~RT~~~--------~~sI~dAHgq~vrdlDfNpnk----------------------- 226 (370)
T KOG1007|consen 179 SPHHDGNQVATTS-DSTLQFWDLRTMKK--------NNSIEDAHGQRVRDLDFNPNK----------------------- 226 (370)
T ss_pred CCCCccceEEEeC-CCcEEEEEccchhh--------hcchhhhhcceeeeccCCCCc-----------------------
Confidence 98 677777654 89999999987432 233346788899999999975
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLA 557 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaS 557 (1491)
..+|++|+.||.|+|||.+..+ .++..+.+|...|.+|.|.|. .++|++
T Consensus 227 --q~~lvt~gDdgyvriWD~R~tk----------------------------~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 227 --QHILVTCGDDGYVRIWDTRKTK----------------------------FPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred --eEEEEEcCCCccEEEEeccCCC----------------------------ccccccCCCceEEEEEEecCccceEEEe
Confidence 3589999999999999998633 466778889999999999995 467888
Q ss_pred EeccceEEEEECCCC-----------------------------ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 558 AIMDCRICVWNAADG-----------------------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tg-----------------------------kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
|+.|..|.+|.+..- ..+.++..|.+.|++++|+..++.++|+-++||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 999999999976421 124567789999999999999999999999999999
Q ss_pred EEeCC
Q 000454 609 VWDIW 613 (1491)
Q Consensus 609 IWDl~ 613 (1491)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 87764
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=9.3e-16 Score=181.38 Aligned_cols=276 Identities=13% Similarity=0.190 Sum_probs=214.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccc
Q 000454 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 366 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~ 366 (1491)
.|..++|-|||..|+.+.. ..+.|||...|..+.++++|...|++++|+.+|+ .+++|+.|..|.+|.-.-...+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk---rFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK---RFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCc---eeccCCCceeEEEecccccceee
Confidence 7999999999998877754 4799999999999999999999999999999998 99999999999999864322111
Q ss_pred eeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCc
Q 000454 367 RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 446 (1491)
Q Consensus 367 ~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V 446 (1491)
..|...|.|+.|+|-...|++++-. ..-+|..... .+. -......|
T Consensus 90 ----------------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK----------~V~-K~kss~R~ 135 (1081)
T KOG1538|consen 90 ----------------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK----------SVS-KHKSSSRI 135 (1081)
T ss_pred ----------------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhh----------hHH-hhhhheeE
Confidence 2488999999999999888887743 3457876421 111 11223467
Q ss_pred eEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCC
Q 000454 447 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ 526 (1491)
Q Consensus 447 ~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~ 526 (1491)
.+.+|..+| .+|+.|-.+|+|.|-+-....
T Consensus 136 ~~CsWtnDG--------------------------qylalG~~nGTIsiRNk~gEe------------------------ 165 (1081)
T KOG1538|consen 136 ICCSWTNDG--------------------------QYLALGMFNGTISIRNKNGEE------------------------ 165 (1081)
T ss_pred EEeeecCCC--------------------------cEEEEeccCceEEeecCCCCc------------------------
Confidence 888998886 699999999999987433211
Q ss_pred CCCCCCceeccCCCCCeeEEEEcCCC-----CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 527 PPRGGPRQRILPTPRGVNMIVWSLDN-----RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 527 ~~~~~~~~~l~~h~~~VtsVafSPDG-----~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
...+.+.-+.+.+|.+++|+|.. ..+++.....++.+|.+ +|+.+..-+.-.-.-.|+.+.| ++.+++.|
T Consensus 166 ---k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~LiG 240 (1081)
T KOG1538|consen 166 ---KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYILLG 240 (1081)
T ss_pred ---ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheecc-CCcEEEEc
Confidence 12233344567889999999963 46888888888888887 4555543332233346888888 67777789
Q ss_pred eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
|.|+.+.+|-- .|..+.++-.....|+.++..|++++++.|+.||+|..|++..
T Consensus 241 Gsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 241 GSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99999999975 7888888877777999999999999999999999999999854
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1e-15 Score=171.71 Aligned_cols=281 Identities=17% Similarity=0.277 Sum_probs=209.6
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
+.+|++...|.|++||..+++.+..++++...+..+.|.... .++.+++|+.||+|++||++......++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~----- 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQ----- 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccC-----
Confidence 578888899999999999999999999999999999998753 23489999999999999999887666653311
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1491)
.......|++..-.++.+++|+. +-.|.+||++..+. ..-.....|...|++|.|+|
T Consensus 115 ------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 115 ------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred ------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEecC
Confidence 12345678888778889998864 67899999986432 12334578999999999999
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
.. +++|++||.||.|.+||+.... ....+
T Consensus 176 ~~-------------------------pnlLlSGSvDGLvnlfD~~~d~--------------------------EeDaL 204 (376)
T KOG1188|consen 176 SD-------------------------PNLLLSGSVDGLVNLFDTKKDN--------------------------EEDAL 204 (376)
T ss_pred CC-------------------------CCeEEeecccceEEeeecCCCc--------------------------chhhH
Confidence 75 6899999999999999988521 12344
Q ss_pred eeccCCCCCeeEEEEcCCC-CEEEEEeccceEEEEECCCCceEEEEeCCC----------CCeEEEE-EecCCCcEEEEE
Q 000454 534 QRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHT----------ESTYVLD-VHPFNPRIAMSA 601 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~IrIWDl~tgkll~tL~gHs----------~~VtsLa-fSPdd~~lLaSg 601 (1491)
.....+...|.++.|..++ +.|.+-+...+..+|++..+.....+.... .--+-|. .+|-+..+++.+
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 5556677889999999887 458888889999999999887655443221 0001122 235445555555
Q ss_pred eC-CCcEEEEeCC---C---CceEEEEeeCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 602 GY-DGKTIVWDIW---E---GIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 602 S~-DGtIrIWDl~---t---Gk~l~~l~~h~~-~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+. -|...++-+. + ++.+..+.+++. -|.++.|.-.+.++.+|++||.|.+|..
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 54 5555555433 2 456667776444 5668899889999999999999999996
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=7.2e-15 Score=181.73 Aligned_cols=288 Identities=17% Similarity=0.232 Sum_probs=209.6
Q ss_pred CeEEEEECCCC-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 307 CIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 307 GtIrVWDl~tg-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
+.+.||++... .+-..+. ....|++++|+|... .+|+.|..+|.|.+||++.+...... ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s--------------~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPS--------------GLS 284 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCc--------------ccc
Confidence 47999999876 4444444 567899999999865 48999999999999999877653211 112
Q ss_pred CCCCCCCcceEEEEECCCC--CEEEEecCCceEEEEeCCCCCCCCCCCCCcee---eeecCCCCCceEEEEccCcccccc
Q 000454 386 SSAGPQSHQIFCCAFNANG--TVFVTGSSDTLARVWNACKPNTDDSDQPNHEI---DVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG--~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i---~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.....|...++.+.|..+- .-|++++.||.|..|+++.-............ ..-......++++.|.+.-
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~----- 359 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD----- 359 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----
Confidence 3345688899999997654 44999999999999988653321111110000 0001223456777777643
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
+..|+.|+.+|.|..-+-...+... ............|.
T Consensus 360 --------------------p~~FiVGTe~G~v~~~~r~g~~~~~---------------------~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 360 --------------------PNHFIVGTEEGKVYKGCRKGYTPAP---------------------EVSYKGHSTFITHI 398 (555)
T ss_pred --------------------CceEEEEcCCcEEEEEeccCCcccc---------------------cccccccccccccC
Confidence 5689999999998873322211000 00112233556788
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECC-CCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ce
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAA-DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--IP 617 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~-tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG--k~ 617 (1491)
+.|+++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||..+.+++++..||.|.|||+... .+
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999999999998877776679999999988 777888888888889999999988899999999999999999643 45
Q ss_pred EEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 618 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 618 l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.....+....+.+.|++.|+.|++|+..|.+++|++...
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 6665555556778899999999999999999999999643
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=5.9e-16 Score=168.31 Aligned_cols=302 Identities=14% Similarity=0.165 Sum_probs=205.3
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+...+++|.+.|+++.|-.++. |.+|..-|.|++|++++...+..++ .|...|+.+.-.|++ .|.+-+.|+.+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d----~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND----SLDTQGRDPLLI 80 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc----chhhcCCCceEE
Confidence 4567889999999999988775 8899999999999999999888888 677899999999985 599999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-----CCC----EEEEecCCc-eEEEEeCCCCC
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGT----VFVTGSSDT-LARVWNACKPN 425 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-----DG~----~LasGs~DG-~IrVWDl~t~~ 425 (1491)
+|++..+..+..-.+ .+.++.|.+ .++ .++.-+... .+.+-|.....
T Consensus 81 lw~ia~s~~i~i~Si-----------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI-----------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred EEEccCcceEEEeee-----------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 999987655433211 122222221 111 111110000 01111111000
Q ss_pred CCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCc
Q 000454 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 505 (1491)
Q Consensus 426 ~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~ 505 (1491)
.. .-.-..-.+..+.+.+..+...- ...-.++.|-.+|.+.+||+.++....
T Consensus 138 qv-----~i~dd~~~~Klgsvmc~~~~~~c-----------------------~s~~lllaGyEsghvv~wd~S~~~~~~ 189 (323)
T KOG0322|consen 138 QV-----QIADDSERSKLGSVMCQDKDHAC-----------------------GSTFLLLAGYESGHVVIWDLSTGDKII 189 (323)
T ss_pred ee-----EccCchhccccCceeeeeccccc-----------------------cceEEEEEeccCCeEEEEEccCCceee
Confidence 00 00000011223344444432110 001267889999999999999753111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC--CceE--EEEeCC
Q 000454 506 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--GSLV--HSLTGH 581 (1491)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t--gkll--~tL~gH 581 (1491)
. + +...........|..+|.++.|.+.-..=++|+.+..+..|++.. +.+. ..+.-.
T Consensus 190 ~---~----------------~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 190 Q---L----------------PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred c---c----------------ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 0 0 011122334566888999999987666667788888899998753 3322 222323
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 582 s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
.-.|..+.+-| +++++||+|+|+.|+||...++.++..+..|...|.+++|+||...||+++.|++|.+|++
T Consensus 251 npGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 44578888999 8899999999999999999999999999999999999999999999999999999999986
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=2.1e-15 Score=165.53 Aligned_cols=279 Identities=20% Similarity=0.267 Sum_probs=198.4
Q ss_pred EEEccCCCCEEEEEEcCC-CCEEEEEeCC-------CeEEEEECCC---------CeEEEEEe-cCCCCeEEEEEcCCCC
Q 000454 237 KRVRGHRNAVYCAIFDRS-GRYVITGSDD-------RLVKIWSMET---------AYCLASCR-GHEGDITDLAVSSNNA 298 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpD-G~~LATGS~D-------GtIrIWDl~T---------g~~l~tL~-gH~~~VtsLafSPDG~ 298 (1491)
+.|..|.+.|+.++-+|. .++|+|+-.+ -.+.||.+.. .+++..|. .+-+.|.||.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 467778999999999994 5566666431 2578998853 23444554 4566999999999999
Q ss_pred EEEEEECCCeEEEEECCCCCc-eeeec-----cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC
Q 000454 299 LVASASNDCIIRVWRLPDGLP-ISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1491)
Q Consensus 299 lLASGS~DGtIrVWDl~tgk~-i~~L~-----gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~ 372 (1491)
.||+-. |..|.+|++..+.. ++.+. +|....++-+|+|.-.. ..+....|+++..||+++..+...+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg--nqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG--NQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc--ceEEEeCCCcEEEEEccchhhhcch----
Confidence 998876 78999999988765 44332 35667888999994321 2344456899999999987765554
Q ss_pred CCCcccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEE
Q 000454 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451 (1491)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVaf 451 (1491)
...|...|..+.|+|+.. +|++++.||.|+|||.+.. ..++..+.+|...|.+|.|
T Consensus 210 ---------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 210 ---------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ---------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEe
Confidence 245888899999999875 6788999999999999863 4578889999999999999
Q ss_pred ccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 000454 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1491)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 531 (1491)
.|.- .+.+++|+.|..|.+|...+-........-...-............+...+
T Consensus 267 n~~h-------------------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 267 NPEH-------------------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred cCcc-------------------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 9864 468899999999999977653211110000000000000001111234456
Q ss_pred CceeccCCCCCeeEEEEcCCCCE-EEEEeccceEEEEECC
Q 000454 532 PRQRILPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAA 570 (1491)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~-LaSGs~DG~IrIWDl~ 570 (1491)
.+.++..|...|.+++||.-..+ +|+-+.||.+.|=.+.
T Consensus 322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 67778889999999999987776 5567899999886653
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.1e-15 Score=166.83 Aligned_cols=301 Identities=13% Similarity=0.138 Sum_probs=219.2
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------CCCceeeecc-CCCceEEEEecCCCCceEEEEEEeC
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------DGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSD 350 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~------tgk~i~~L~g-Hs~~VtsLaFSPdg~s~~~LaSgS~ 350 (1491)
.+.+.+|.+.|.+|.|+.++++||+|+.|..++||++. +.+++..... |...|.|++|.-.+. .|++|+.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---~~~SG~~ 125 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---FLYSGER 125 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---eEecCCC
Confidence 34567899999999999999999999999999999985 3466666543 458999999998876 8999999
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+++|.+-|+.+.+.+..+.. ....+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~----- 182 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANE------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ----- 182 (609)
T ss_pred cceeEeeecccceeeeeecc------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCC-----
Confidence 99999999998876555421 2244579999999999999999999999999997532
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
.+..+ ..+.........+.|.|.. +.+|++.+..|-+-+||++...... +
T Consensus 183 ~~~~~-~~~AN~~~~F~t~~F~P~~-------------------------P~Li~~~~~~~G~~~~D~R~~~~~~----~ 232 (609)
T KOG4227|consen 183 NPISL-VLPANSGKNFYTAEFHPET-------------------------PALILVNSETGGPNVFDRRMQARPV----Y 232 (609)
T ss_pred CCCce-eeecCCCccceeeeecCCC-------------------------ceeEEeccccCCCCceeeccccchH----H
Confidence 12222 2223334456677787764 4588999999999999998633110 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCC-------C
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT-------E 583 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs-------~ 583 (1491)
.... ...+......-..+.|+|.|..|++.-....-.+||+.+.++..--..|. .
T Consensus 233 ~~~~------------------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~ 294 (609)
T KOG4227|consen 233 QRSM------------------FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIK 294 (609)
T ss_pred hhhc------------------cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeee
Confidence 0000 00011112223567899999999887655566678887655432222232 2
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----------C-------------ceEEEEeeCCcceEEEEEcCCCCEE
Q 000454 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWE----------G-------------IPIRIYEISRFRLVDGKFSPDGASI 640 (1491)
Q Consensus 584 ~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t----------G-------------k~l~~l~~h~~~VtslafSPDG~~L 640 (1491)
.|.+++|. +.+-+++|+.+-.|++|.+.. | +.+..+.+|..-+..+.|+|...+|
T Consensus 295 T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l 372 (609)
T KOG4227|consen 295 TIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLL 372 (609)
T ss_pred eeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceE
Confidence 45667775 456688999999999998742 1 2345677888888999999999999
Q ss_pred EEEeCCCcEEEEEC
Q 000454 641 ILSDDVGQLYILNT 654 (1491)
Q Consensus 641 Asgs~DG~I~IWdl 654 (1491)
++.+-...++||.-
T Consensus 373 ~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 373 VSSGVENSFKLWSD 386 (609)
T ss_pred eccchhhheecccc
Confidence 99999999999974
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=6.1e-15 Score=182.49 Aligned_cols=290 Identities=17% Similarity=0.273 Sum_probs=211.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC---CCCeEEEEEcC--CCCEEEEEECCCeEEEEEC-CCC
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH---EGDITDLAVSS--NNALVASASNDCIIRVWRL-PDG 317 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH---~~~VtsLafSP--DG~lLASGS~DGtIrVWDl-~tg 317 (1491)
..-..+.|+|-...|+++.+.-.|+|||.+.++++..|..+ ...|+.+.+-. |..+|++|+.||.|+||+- .++
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34566889998889999987889999999999998887643 45788888865 4569999999999999963 222
Q ss_pred ----CceeeeccC-------CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 318 ----LPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 318 ----k~i~~L~gH-------s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
+.+..+.+- .+.=.-+.|....+ +|+++|.-..|+|||+....+...+..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G---~Ll~tGd~r~IRIWDa~~E~~~~diP~---------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG---HLLVTGDVRSIRIWDAHKEQVVADIPY---------------- 1205 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCC---eEEecCCeeEEEEEecccceeEeeccc----------------
Confidence 233222211 11123467777766 788888789999999987776555422
Q ss_pred CCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC--ceEEEEccCccccccccc
Q 000454 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLA 463 (1491)
Q Consensus 387 s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~ 463 (1491)
.....|+++.-+- .|+.|++|..||.|++||.+... +...+.....|... |..+.+.+.|.
T Consensus 1206 ---~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------~ds~v~~~R~h~~~~~Iv~~slq~~G~------- 1269 (1387)
T KOG1517|consen 1206 ---GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------PDSLVCVYREHNDVEPIVHLSLQRQGL------- 1269 (1387)
T ss_pred ---CCCccceeecccccCCceEEEeecCCceEEeecccCC------ccccceeecccCCcccceeEEeecCCC-------
Confidence 1233455555433 57999999999999999997643 23567778888887 99999988762
Q ss_pred cCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC---C
Q 000454 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT---P 540 (1491)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h---~ 540 (1491)
..|++|+.+|.|++||++..... . ...+..| .
T Consensus 1270 ------------------~elvSgs~~G~I~~~DlR~~~~e--------------------------~-~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1270 ------------------GELVSGSQDGDIQLLDLRMSSKE--------------------------T-FLTIVAHWEYG 1304 (1387)
T ss_pred ------------------cceeeeccCCeEEEEecccCccc--------------------------c-cceeeeccccC
Confidence 37999999999999999962100 0 0001111 1
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-------s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
..++++..+++...+|+|+. +.|+||++. |+.+..++.+ .+.+.|++||| -..++|+|+.|.+|.||...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecC
Confidence 24899999999999999988 999999985 5555444322 34679999999 66788889999999999886
Q ss_pred CCc
Q 000454 614 EGI 616 (1491)
Q Consensus 614 tGk 616 (1491)
.+.
T Consensus 1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred CcC
Confidence 543
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=3.8e-14 Score=175.42 Aligned_cols=285 Identities=16% Similarity=0.203 Sum_probs=199.0
Q ss_pred CCeEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCCc--eee----eccCCCceEEEEe
Q 000454 264 DRLVKIWSMETA-YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGLP--ISV----LRGHTAAVTAIAF 335 (1491)
Q Consensus 264 DGtIrIWDl~Tg-~~l~tL~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~tgk~--i~~----L~gHs~~VtsLaF 335 (1491)
++.+.||++... .....+. -...|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 358999999876 3334443 577899999999 567889999999999999987754 222 2368899999999
Q ss_pred cCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCc
Q 000454 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDT 414 (1491)
Q Consensus 336 SPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG 414 (1491)
..+..+ .-|++++.||.|+.|+++.-........ ................++++.|.+ +-..|++|+..|
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~--------~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLL--------LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcc--------cccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 887653 4699999999999998765443211110 000000111223456789999988 456899999999
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
.|..-.-....... ....+....+..|.+.|+++.++|-+ +..|++++ |.+++
T Consensus 371 ~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~-------------------------~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFY-------------------------PKNFLSVG-DWTVR 423 (555)
T ss_pred EEEEEeccCCcccc-cccccccccccccCcceEeeecCCCc-------------------------cceeeeec-cceeE
Confidence 98773332211110 01123344667889999999999854 34556655 99999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccceEEEEECCC--
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD-- 571 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~IrIWDl~t-- 571 (1491)
||..... ..++..+..+...|++++|||--. .++++..||.|.|||+..
T Consensus 424 iWs~~~~----------------------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 424 IWSEDVI----------------------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eccccCC----------------------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 9975521 133444455666799999999764 566777899999999954
Q ss_pred CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 572 gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
..++.+..-+....+.+.|++ .+++|+.|...|.|.+|++..
T Consensus 476 ~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 345555555556667777877 789999999999999999953
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.7e-15 Score=167.30 Aligned_cols=286 Identities=13% Similarity=0.187 Sum_probs=196.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCCceeee--ccCC-Cce
Q 000454 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVL--RGHT-AAV 330 (1491)
Q Consensus 256 ~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSP--DG~lLASGS~DGtIrVWDl~tgk~i~~L--~gHs-~~V 330 (1491)
..+|++...|.|+|||..+|+.+..++++...+..+.|.. ....+.+|+.||+|++||+++......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 4568999999999999999887655444 4454 455
Q ss_pred EEEEecCCCCceEEEEEEe----CCCcEEEEccCCCCcc-ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CC
Q 000454 331 TAIAFSPRPGSVYQLLSSS----DDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NG 404 (1491)
Q Consensus 331 tsLaFSPdg~s~~~LaSgS----~DGtVrIWDl~tg~~~-~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG 404 (1491)
.+++..-... .+++|. .+-.|.+||++..+.. ..+ ...|...|+++.|+| +.
T Consensus 121 ~~ld~nck~~---ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-------------------~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 121 ICLDLNCKKN---IIACGTELTRSDASVVLWDVRSEQQLLRQL-------------------NESHNDDVTQLRFHPSDP 178 (376)
T ss_pred eEeeccCcCC---eEEeccccccCceEEEEEEeccccchhhhh-------------------hhhccCcceeEEecCCCC
Confidence 6666654544 566654 3667999999987652 222 245889999999999 55
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
++|++|+.||.|.|||+.... ....+.....|...|..+.|...+ .+.|
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~------EeDaL~~viN~~sSI~~igw~~~~-------------------------ykrI 227 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDN------EEDALLHVINHGSSIHLIGWLSKK-------------------------YKRI 227 (376)
T ss_pred CeEEeecccceEEeeecCCCc------chhhHHHhhcccceeeeeeeecCC-------------------------cceE
Confidence 799999999999999996531 122334445677789999998765 2579
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec-cce
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCR 563 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~ 563 (1491)
.+.+..++..+|++..+....... ...+ ...-.........-|.+.. .-++.++++++. -+.
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~~~----~~~~------------~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETWLE----NPDV------------SADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNK 290 (376)
T ss_pred EEEEccCceeEEEccCCChhhccc----Cccc------------hhhhHHhhhhhhheeeccc-CCCcceEEEeccccCc
Confidence 999999999999998754211110 0000 0000000001111122221 123344444433 455
Q ss_pred EEEEEC---CC---CceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 564 ICVWNA---AD---GSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 564 IrIWDl---~t---gkll~tL~g-Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..++-+ .+ .+.+..+.+ |...|.++.|.. .+.+++|||.||.+.+|..
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 554433 22 345566666 666778888865 6688999999999999986
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=4.1e-14 Score=178.00 Aligned_cols=321 Identities=16% Similarity=0.198 Sum_probs=217.6
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMET-------AYCLASCRGHEGDITDLAVSSNNALVA 301 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG-~~LATGS~DGtIrIWDl~T-------g~~l~tL~gH~~~VtsLafSPDG~lLA 301 (1491)
-.++..+.+|..|...|..++.++.. .+++|||.||+|+||++.. .+...++..-...+.++.+.+.+..+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 45678899999999999999988754 9999999999999999853 233444544578899999999999999
Q ss_pred EEECCCeEEEEECCCC--C-----ceeee--ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC
Q 000454 302 SASNDCIIRVWRLPDG--L-----PISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1491)
Q Consensus 302 SGS~DGtIrVWDl~tg--k-----~i~~L--~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~ 372 (1491)
.++.||.|++.++... . +.... ......|..-+|.....+ ..|+.+..-+.|..||++......++..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~-- 1191 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN-- 1191 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc--
Confidence 9999999999998652 1 11111 122234445556555544 3788888889999999988766555532
Q ss_pred CCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee-eecCCCCCceEEEE
Q 000454 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQF 451 (1491)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVaf 451 (1491)
....+.|++++.+|.+.+++.|+..|.+.+||++-. .++. .-.++..++..+..
T Consensus 1192 ----------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---------~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1192 ----------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---------VPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred ----------------CccccceeEEEecCCceEEEEecCCceEEEEEeecC---------ceeecccCcccCCcceEEe
Confidence 335678999999999999999999999999999742 1222 22344567777777
Q ss_pred ccCccccccccccCCCCCCCccccccccCCCe-EEEEe-CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDN-IVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~~~~~~~~-LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
+|... .... +.+++ ..+.|.+|++.++. .....|... ..+.+....+.
T Consensus 1247 ~~~~~-----------------------~~S~~vs~~~~~~nevs~wn~~~g~--~~~vl~~s~-----~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1247 CPTYP-----------------------QESVSVSAGSSSNNEVSTWNMETGL--RQTVLWASD-----GAPILSYALPS 1296 (1431)
T ss_pred eccCC-----------------------CCceEEEecccCCCceeeeecccCc--ceEEEEcCC-----CCcchhhhccc
Confidence 76420 0023 33444 67889999999864 233333320 01111111111
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE----------------------------------
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV---------------------------------- 575 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll---------------------------------- 575 (1491)
. ....++.-.....++..-+.++++|+.|..|+.||.......
T Consensus 1297 ~---~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~ 1373 (1431)
T KOG1240|consen 1297 N---DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFII 1373 (1431)
T ss_pred c---cCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhh
Confidence 1 000122222333445555678999999999999997532110
Q ss_pred --------------EEE--------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 576 --------------HSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 576 --------------~tL--------~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
..+ ..|..+|+++++......+|++++.||.|+||.
T Consensus 1374 ~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1374 YQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 136778899988876778999999999999993
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.4e-15 Score=174.40 Aligned_cols=182 Identities=24% Similarity=0.370 Sum_probs=144.8
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcC--CCCEEEEEEC
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNALVASASN 305 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSP--DG~lLASGS~ 305 (1491)
++..+.+-+.|.||++.|.|++|+.+|.+||+||+|-.|.|||.-..++++.+. ||.+.|.++.|-| +++++++|..
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 344466667899999999999999999999999999999999999888888775 8999999999999 5669999999
Q ss_pred CCeEEEEECCC----------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 306 DCIIRVWRLPD----------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 306 DGtIrVWDl~t----------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
|..|+|+|+.. ...+..+..|...|..|+-.|++. +.+.+++.||+|+-+|++.......-
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~p~------- 186 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCNPD------- 186 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCCcc-------
Confidence 99999999974 234566778999999999999975 48999999999999999864321110
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCC
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~ 422 (1491)
+..........+.--...|+.++|. ..+||+|+.|-.+++||.+
T Consensus 187 ---~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 187 ---EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ---ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 0000000111122245789999995 5689999999999999964
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5.2e-14 Score=174.48 Aligned_cols=299 Identities=15% Similarity=0.160 Sum_probs=204.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccC---CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH---TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 286 ~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gH---s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
..-..+.|+|-...|+++...-.|+|||.+.++.+..|..+ ...|+.+.+..... ..+|++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D-~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQD-DALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccc-hhheeeeccCceEEEeccccc
Confidence 35667788998888999887779999999999988777643 35788998876543 238999999999999964322
Q ss_pred C-ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee-c
Q 000454 363 Q-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-S 440 (1491)
Q Consensus 363 ~-~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l-~ 440 (1491)
. ....+. .+............... .-+.|.....+|+++|.-..|+|||+.+.. ....+ .
T Consensus 1144 ~~~~~eLV--------Taw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~---------~~~diP~ 1205 (1387)
T KOG1517|consen 1144 KWKKPELV--------TAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ---------VVADIPY 1205 (1387)
T ss_pred ccCCceeE--------EeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccce---------eEeeccc
Confidence 1 111110 01000000111111122 557787766677777768899999996521 22222 2
Q ss_pred CCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCC
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1491)
Q Consensus 441 gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~ 520 (1491)
+....|+++.-.-. .++.|+.|-.||.|++||.+....
T Consensus 1206 ~s~t~vTaLS~~~~-------------------------~gn~i~AGfaDGsvRvyD~R~a~~----------------- 1243 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLV-------------------------HGNIIAAGFADGSVRVYDRRMAPP----------------- 1243 (1387)
T ss_pred CCCccceeeccccc-------------------------CCceEEEeecCCceEEeecccCCc-----------------
Confidence 22334444432211 147999999999999999885221
Q ss_pred CCCCCCCCCCCCceeccCCCCC--eeEEEEcCCCCE-EEEEeccceEEEEECCCCceE--EEEeCCC--C-CeEEEEEec
Q 000454 521 PPMPPQPPRGGPRQRILPTPRG--VNMIVWSLDNRF-VLAAIMDCRICVWNAADGSLV--HSLTGHT--E-STYVLDVHP 592 (1491)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~--VtsVafSPDG~~-LaSGs~DG~IrIWDl~tgkll--~tL~gHs--~-~VtsLafSP 592 (1491)
...+.....|... |..+.+-+.|-- |++|+.+|.|++||++..... .++..|. + .++++..|+
T Consensus 1244 ---------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1244 ---------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred ---------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc
Confidence 1233444556655 888889887655 999999999999999874222 2233343 3 589999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC-------CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 593 dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h-------~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
...++|+|+. +.|+||++ .|+.+..+... .+.+.|++|+|-.-+||+|..|..|.||....+
T Consensus 1315 -hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1315 -HAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -CCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 6788889888 99999999 67666655432 346789999999999999999999999987654
No 189
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=5.7e-14 Score=156.42 Aligned_cols=365 Identities=14% Similarity=0.117 Sum_probs=228.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCCceeeeccC
Q 000454 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SNDCIIRVWRLPDGLPISVLRGH 326 (1491)
Q Consensus 248 ~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASG-S~DGtIrVWDl~tgk~i~~L~gH 326 (1491)
-+.|||+|++||+++.- .+.|-|..+.+.++.+.. -..|..|.|..|..+++++ ..++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999876 788889888766554432 4568888999988877665 55789999999988888888888
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000454 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1491)
Q Consensus 327 s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~ 406 (1491)
...+.+++|+|+|+ ..|.+...+-.|.+|.+.+.+..... . ....+..++|+|||++
T Consensus 91 ~agls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~~~---~------------------pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 91 QAGLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYLLP---H------------------PKTNVKGYAFHPDGQF 147 (447)
T ss_pred CCcceeeeECCCcc--eEeeeecceeEEEEEEeccceeEEec---c------------------cccCceeEEECCCCce
Confidence 88999999999996 47888889999999999876543221 1 2334577888888888
Q ss_pred EEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC--------CCCCccccccc
Q 000454 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK--------EDSTPKFKNSW 478 (1491)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~--------~~~~~~~~~~~ 478 (1491)
.+..+.......+.+.. -+....+..+.-.+-..+.+.|+|+|..... .+..- .....++..-.
T Consensus 148 ~ai~sRrDCkdyv~i~~------c~~W~ll~~f~~dT~DltgieWsPdg~~laV--wd~~Leykv~aYe~~lG~k~v~ws 219 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISS------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--WDNVLEYKVYAYERGLGLKFVEWS 219 (447)
T ss_pred eeeeecccHHHHHHHHh------hHHHHHHHhcCCCcccccCceECCCCcEEEE--ecchhhheeeeeeeccceeEEEec
Confidence 77766432211111110 0112334444445556666777776532111 11000 00111111112
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCcccccc------------c---c-----ccccCCCCCCCCCCC-----------
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW------------T---Q-----AYHLKVPPPPMPPQP----------- 527 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~------------~---~-----~~~l~~~~~~~~~~~----------- 527 (1491)
.+++.|+.|+.|+.++|.+--+-+..+..... . . ...+..++.......
T Consensus 220 P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 220 PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 23678999999999998543332221110000 0 0 000111111110000
Q ss_pred ------CCCCCceeccCCCCCeeEEEEcCCCCEEEEEec--cceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEE
Q 000454 528 ------PRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM--DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 599 (1491)
Q Consensus 528 ------~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~--DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLa 599 (1491)
....+.........++..++|++|..++++-.. -..+.|||++..++...+. ...+|....|+|..+++++
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEE
Confidence 000111111222456888999999999998643 3579999998877665554 4567999999996666665
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCc
Q 000454 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ 648 (1491)
Q Consensus 600 SgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~ 648 (1491)
+.....+++|...-...+.. ......|..++|.-+|..|+..+.|..
T Consensus 379 -ctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 379 -CTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred -EcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 44456799999854344433 334468999999999999999888753
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.2e-15 Score=171.85 Aligned_cols=315 Identities=17% Similarity=0.220 Sum_probs=233.1
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
.+...|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+++...+. +|...|....|.|.... ..|++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce
Confidence 4456788999999999999999999999999999999999998776664 79889988889987643 379999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
++=.+........ ......|.+.|.-++.-|+. ..|.+++.|+.+.-+|++.... .
T Consensus 212 r~s~i~~t~~~e~-----------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p------a 268 (559)
T KOG1334|consen 212 RVSEILETGYVEN-----------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP------A 268 (559)
T ss_pred eeeeeccccceec-----------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc------c
Confidence 9876643332221 11235588889999998865 5688899999999999876422 2
Q ss_pred ceeeeecCCCC---CceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 434 HEIDVLSGHEN---DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 434 ~~i~~l~gH~~---~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
..+.....+.. ....|+..|.. ...|++++.|-.+++||.+.-.........
T Consensus 269 ~~~~cr~~~~~~~v~L~~Ia~~P~n-------------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~ 323 (559)
T KOG1334|consen 269 EKFVCREADEKERVGLYTIAVDPRN-------------------------TNEFAVGGSDQFARVYDQRRIDKEENNGVL 323 (559)
T ss_pred ceeeeeccCCccceeeeeEecCCCC-------------------------ccccccCChhhhhhhhcccchhhccccchh
Confidence 22223333333 45566666643 358999999999999998753311110000
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC--C----------ceEE-E
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--G----------SLVH-S 577 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t--g----------kll~-t 577 (1491)
....+..........|++++|+.++.-|+++..|-.|++|.-.- | ..+. .
T Consensus 324 -----------------~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v 386 (559)
T KOG1334|consen 324 -----------------DKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV 386 (559)
T ss_pred -----------------hhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchh
Confidence 00001111123445699999998888888888898999995432 3 2333 3
Q ss_pred EeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 578 LTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 578 L~gHs~--~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
++||.. .|..+-|---...|+++|+.-|.|.||+-.+++.++.+.+...-|.||.=+|--..||+++-|..|+||-..
T Consensus 387 YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 387 YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 789975 467776632246799999999999999999999999999888788899999999999999999999999864
Q ss_pred C
Q 000454 656 Q 656 (1491)
Q Consensus 656 t 656 (1491)
+
T Consensus 467 ~ 467 (559)
T KOG1334|consen 467 T 467 (559)
T ss_pred c
Confidence 3
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=5.3e-14 Score=160.04 Aligned_cols=227 Identities=22% Similarity=0.368 Sum_probs=168.1
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------CceeeeccCCCceEEEEecCCCCceEEEEEEeCC
Q 000454 280 SCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1491)
Q Consensus 280 tL~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~tg-------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D 351 (1491)
.+.||.++|.+++|+| +...||+||.|.+|.||.+..+ +++..|.+|...|--|+|+|... +.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCC
Confidence 4569999999999999 5678999999999999998754 56778899999999999999865 489999999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
.+|.+|++.+++.+..+ .|...|++++|+.||.+|++.+.|..|+|||.+++
T Consensus 154 n~v~iWnv~tgeali~l---------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------- 205 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL---------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------- 205 (472)
T ss_pred ceEEEEeccCCceeeec---------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCC-------
Confidence 99999999999866554 28889999999999999999999999999999874
Q ss_pred CCceeeeecCCCCC-ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE----eCCCeEEEEecCCCCCCcc
Q 000454 432 PNHEIDVLSGHEND-VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC----SRDGSAIIWIPRSRRSHPK 506 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~-V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg----S~DGtIrIWDl~s~k~~~~ 506 (1491)
..+....+|.+. -.-+.|..++ . +++. -.+..+-+||......
T Consensus 206 --~~v~e~~~heG~k~~Raifl~~g--------------------------~-i~tTGfsr~seRq~aLwdp~nl~e--- 253 (472)
T KOG0303|consen 206 --TVVSEGVAHEGAKPARAIFLASG--------------------------K-IFTTGFSRMSERQIALWDPNNLEE--- 253 (472)
T ss_pred --cEeeecccccCCCcceeEEeccC--------------------------c-eeeeccccccccceeccCcccccC---
Confidence 344445566652 2334444443 2 3333 3477899998875221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE-eccceEEEEECCCCce-EEEEeC--CC
Q 000454 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSL-VHSLTG--HT 582 (1491)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG-s~DG~IrIWDl~tgkl-l~tL~g--Hs 582 (1491)
...........+|..--|.+|...|..+ -.|+.|+.|.+..-.+ ++-|.. ..
T Consensus 254 ------------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 254 ------------------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred ------------------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 0112233455677777889998887654 4799999999876543 333321 12
Q ss_pred CCeEEEEEec
Q 000454 583 ESTYVLDVHP 592 (1491)
Q Consensus 583 ~~VtsLafSP 592 (1491)
.+-..+.|-|
T Consensus 310 epQRG~g~mP 319 (472)
T KOG0303|consen 310 EPQRGMGFMP 319 (472)
T ss_pred Cccccccccc
Confidence 2334555555
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=7.3e-13 Score=157.27 Aligned_cols=277 Identities=12% Similarity=0.124 Sum_probs=173.9
Q ss_pred EEEEECCCeEEEEECCC-CC--ceeeeccCCCceEEEEecCCCCceEEEEEE-eCCCcEEEEccCC-CCccceeecCCCC
Q 000454 300 VASASNDCIIRVWRLPD-GL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARY-SQFSPRIYIPRPS 374 (1491)
Q Consensus 300 LASGS~DGtIrVWDl~t-gk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg-S~DGtVrIWDl~t-g~~~~~i~~~~~~ 374 (1491)
+++...++.|.+|++.+ ++ .+..+. +.+....++|+|+++ +|+++ ..++.|.+|++.. +.+ .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~---~lyv~~~~~~~i~~~~~~~~g~l-~~~~~---- 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR---HLYVGVRPEFRVLSYRIADDGAL-TFAAE---- 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC---EEEEEECCCCcEEEEEECCCCce-EEeee----
Confidence 34446789999999964 33 344444 346678899999987 56554 4578899999863 322 11100
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1491)
......+..++|+|+|++|++++ .++.|.+|++.+.... ...+..+. +......++++|
T Consensus 76 --------------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~-----~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 76 --------------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP-----VAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC-----CCceeecc-CCCcccEeEeCC
Confidence 00122356899999999888765 4889999998532110 11122222 223456778888
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
++ ...+++...++.|.+||+.+........ ...
T Consensus 136 ~g-------------------------~~l~v~~~~~~~v~v~d~~~~g~l~~~~----------------------~~~ 168 (330)
T PRK11028 136 DN-------------------------RTLWVPCLKEDRIRLFTLSDDGHLVAQE----------------------PAE 168 (330)
T ss_pred CC-------------------------CEEEEeeCCCCEEEEEEECCCCcccccC----------------------CCc
Confidence 76 1244666778999999997522100000 000
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEec-cceEEEEECCC--Cc--eEEEEeCCC------CCeEEEEEecCCCcEEEEE-
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--GS--LVHSLTGHT------ESTYVLDVHPFNPRIAMSA- 601 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~IrIWDl~t--gk--ll~tL~gHs------~~VtsLafSPdd~~lLaSg- 601 (1491)
.. .........++|+|+|++|+++.. ++.|.+|++.. ++ .+..+..+. .....+.|+| ++++|+++
T Consensus 169 ~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~ 246 (330)
T PRK11028 169 VT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACD 246 (330)
T ss_pred ee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEec
Confidence 00 011234567899999999988876 89999999973 33 344443221 1234688999 55555555
Q ss_pred eCCCcEEEEeCCCCc----eEEEEeeCCcceEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 000454 602 GYDGKTIVWDIWEGI----PIRIYEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTG 655 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk----~l~~l~~h~~~VtslafSPDG~~LAsgs~-DG~I~IWdl~ 655 (1491)
..++.|.+|++.... .+..+... .....+.|+|||++|+++.. ++.|.||++.
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 457899999996533 23333322 24457899999999998765 8999999874
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.9e-13 Score=147.35 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=200.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC---------C-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 287 DITDLAVSSNNALVASASNDCIIRVWRLPD---------G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS~DGtIrVWDl~t---------g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
.|.+-+|+|.+++|++|..+|.|.|..+.+ | ..+...++|.++|+.++|..+ +|++++. |.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeeccC-ceEEE
Confidence 456678999999999999999999998853 2 345556899999999999954 6777665 99999
Q ss_pred EccCCCCcc------ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 357 WDARYSQFS------PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 357 WDl~tg~~~------~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
|..+..... .....|. ......-..|+++...|..+-++.++.|+.++-||+++
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~-------------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~------- 145 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPM-------------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED------- 145 (325)
T ss_pred eeehhhhhhccchhhhhhcCcc-------------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-------
Confidence 987643321 1111111 11112334688999999877777777899999999987
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
++....+.+|++.|.++.--.. ...+++|+.||++++||.++.+.......+
T Consensus 146 --G~i~r~~rGHtDYvH~vv~R~~--------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 146 --GRIQREYRGHTDYVHSVVGRNA--------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred --CEEEEEEcCCcceeeeeeeccc--------------------------CcceeecCCCccEEEEeccccceeEEeccc
Confidence 5678899999999999987322 248999999999999999987643222211
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCC-CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h-~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLa 589 (1491)
.. ...+.++ ...|.+++. +..+|++|+ ...+.+|.+...++..++. -...|..+.
T Consensus 198 k~--------------------~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~ 253 (325)
T KOG0649|consen 198 KN--------------------PNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVD 253 (325)
T ss_pred cC--------------------hhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-cccceeEee
Confidence 10 1112222 234666665 456888775 4579999999988888775 344577777
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD-GASIILSDDVGQLYILN 653 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPD-G~~LAsgs~DG~I~IWd 653 (1491)
|- ...++++|....|.-|.+ .|.+-......+...+...|+.. -++|-+++....+.|+.
T Consensus 254 F~---~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 254 FV---DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ee---cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 74 457778888889999998 67777777666666776666544 34455566667777663
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.8e-14 Score=170.43 Aligned_cols=266 Identities=20% Similarity=0.313 Sum_probs=191.0
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
++..|...|+.++|.|... .|++++.||+|.+|++..... .......+...+.+|.++|.|+++.
T Consensus 289 tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~------------s~~~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKK------------SAEKDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCC------------ccccceeeeEEEecccCceEEEEec
Confidence 5667899999999999887 899999999999999943111 0122333445667899999999999
Q ss_pred CCCCEEEEecCCceEEEEeCCCCCCC--CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccccc
Q 000454 402 ANGTVFVTGSSDTLARVWNACKPNTD--DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~t~~~~--~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~ 479 (1491)
+++..+++|+.||+|+.|++. .+.. ....+......+.||.+.|+.+++++.
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------------------------- 407 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------------------------- 407 (577)
T ss_pred CCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeeccc-------------------------
Confidence 999999999999999999886 2222 122344566788999999999999976
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEE
Q 000454 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAA 558 (1491)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSG 558 (1491)
+++|++|+.||++++|........ .+. .........++.+-... .+.++.
T Consensus 408 -~~~Llscs~DgTvr~w~~~~~~~~----~f~------------------------~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 408 -KDRLLSCSSDGTVRLWEPTEESPC----TFG------------------------EPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred -ccceeeecCCceEEeeccCCcCcc----ccC------------------------CccccCCcceEeeccchhHhhhhh
Confidence 368999999999999988753310 000 00001112223332211 112222
Q ss_pred eccceEEEEECCCCceEEEEeCC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEE
Q 000454 559 IMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 631 (1491)
Q Consensus 559 s~DG~IrIWDl~tgkll~tL~gH-------s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vtsl 631 (1491)
..-+.--++++..+..+..+..- ...+..+.++| +..+.+++..|+.|+++|..+|.++.....|...|+++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsl 537 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSL 537 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecce
Confidence 22222333444444444443211 13467788999 55778899999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 632 KFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 632 afSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
++.|+|-+|++++.||.|.+|.+....
T Consensus 538 ai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eecCCCceEEeecCCceeehhhccchh
Confidence 999999999999999999999985543
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=2.7e-12 Score=152.52 Aligned_cols=284 Identities=13% Similarity=0.157 Sum_probs=172.8
Q ss_pred EEEeCCCeEEEEECCC-Ce--EEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCCc--eeeeccCCCceE
Q 000454 259 ITGSDDRLVKIWSMET-AY--CLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLP-DGLP--ISVLRGHTAAVT 331 (1491)
Q Consensus 259 ATGS~DGtIrIWDl~T-g~--~l~tL~gH~~~VtsLafSPDG~lLASGS-~DGtIrVWDl~-tgk~--i~~L~gHs~~Vt 331 (1491)
++...++.|.+|++.+ ++ .+..+. +.+....++|+|++++|++++ .++.|.+|++. ++.. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 4446789999999964 43 445554 346678899999999887765 47889999986 3432 22222 234567
Q ss_pred EEEecCCCCceEEEEEEe-CCCcEEEEccCCCC-ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE
Q 000454 332 AIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1491)
Q Consensus 332 sLaFSPdg~s~~~LaSgS-~DGtVrIWDl~tg~-~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~Las 409 (1491)
.++|+|+++ +|++++ .++.|.+|++.+.. ....+.. ..+...+.+++|+|+|+++++
T Consensus 84 ~i~~~~~g~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 84 HISTDHQGR---FLFSASYNANCVSVSPLDKDGIPVAPIQI------------------IEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred EEEECCCCC---EEEEEEcCCCeEEEEEECCCCCCCCceee------------------ccCCCcccEeEeCCCCCEEEE
Confidence 899999997 566555 58899999986432 1111100 011234677889999988865
Q ss_pred e-cCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 410 G-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 410 G-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
+ ..++.|.+||+.+..... ........ .. .......+.|+|++ .+++++.
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~-~~~~~~~~-~~-~g~~p~~~~~~pdg--------------------------~~lyv~~ 193 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLV-AQEPAEVT-TV-EGAGPRHMVFHPNQ--------------------------QYAYCVN 193 (330)
T ss_pred eeCCCCEEEEEEECCCCccc-ccCCCcee-cC-CCCCCceEEECCCC--------------------------CEEEEEe
Confidence 4 456999999996521110 00000111 11 12345678999886 4665554
Q ss_pred -CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec-cceEEE
Q 000454 489 -RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICV 566 (1491)
Q Consensus 489 -~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~IrI 566 (1491)
.+++|.+|++...... . ........ .+. -..+......+.|+|+|++|+++.. ++.|.+
T Consensus 194 ~~~~~v~v~~~~~~~~~--~-~~~~~~~~-~p~---------------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGE--I-ECVQTLDM-MPA---------------DFSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred cCCCEEEEEEEeCCCCC--E-EEEEEEec-CCC---------------cCCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 4999999999742100 0 00000000 000 0001122346889999999999854 789999
Q ss_pred EECCCCceEEEEeCCC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 567 WNAADGSLVHSLTGHT---ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 567 WDl~tgkll~tL~gHs---~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
|++........+.++. .....+.|+|++..++++...+++|.||++.
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9986533222222221 2345789999655555555569999999874
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.57 E-value=1.5e-13 Score=151.44 Aligned_cols=247 Identities=19% Similarity=0.295 Sum_probs=183.3
Q ss_pred cCCCCEEEEEEcCCC-----CEEEEEeCCCeEEEEECCC--CeE--EEEE-----ecCCCCeEEEEEcC-CCCEEEEEEC
Q 000454 241 GHRNAVYCAIFDRSG-----RYVITGSDDRLVKIWSMET--AYC--LASC-----RGHEGDITDLAVSS-NNALVASASN 305 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG-----~~LATGS~DGtIrIWDl~T--g~~--l~tL-----~gH~~~VtsLafSP-DG~lLASGS~ 305 (1491)
.|.-+++.+.|.|+. ++|||.++ .++||.+.. .+. ...+ ..+.+++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999986 46777654 699999873 221 1112 24678999999987 6779999999
Q ss_pred CCeEEEEECCCCCc---eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 306 DCIIRVWRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 306 DGtIrVWDl~tgk~---i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
|-+..|||++++.. ...+-.|...|+.|+|...+. ..|++++.||.|++||++...-...++-..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~--~~FASvgaDGSvRmFDLR~leHSTIIYE~p---------- 239 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR--DVFASVGADGSVRMFDLRSLEHSTIIYEDP---------- 239 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc--ceEEEecCCCcEEEEEecccccceEEecCC----------
Confidence 99999999998743 456778999999999999654 489999999999999999776554443211
Q ss_pred CCCCCCCCCCcceEEEEECC-CCCEEEEecCC-ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNA-NGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSP-DG~~LasGs~D-G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
........++|++ |-+++|+-..| ..|.|.|++. |...+..+.+|.+.|++|+|.|..
T Consensus 240 -------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS----- 299 (364)
T KOG0290|consen 240 -------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHS----- 299 (364)
T ss_pred -------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCC-----
Confidence 1145678899988 45677775554 4699999985 356788999999999999999975
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
...|++++.|..+.|||+...-. .....++.... ..
T Consensus 300 --------------------~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPilay~-a~ 335 (364)
T KOG0290|consen 300 --------------------SSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILAYT-AG 335 (364)
T ss_pred --------------------CceeeecCCcceEEEEecccccc-----------------------cCCCCchhhhh-cc
Confidence 46899999999999999985210 00111222222 45
Q ss_pred CCeeEEEEcC-CCCEEEEEeccceEEE
Q 000454 541 RGVNMIVWSL-DNRFVLAAIMDCRICV 566 (1491)
Q Consensus 541 ~~VtsVafSP-DG~~LaSGs~DG~IrI 566 (1491)
..|+.+.|++ .+.+|+++.. .++.|
T Consensus 336 ~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 336 GEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ceeeeeeecccCCCEEEEEec-CeeeE
Confidence 6799999995 5667777653 34433
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.57 E-value=6e-14 Score=159.59 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=160.2
Q ss_pred EEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCC-CCEEEEEECCC
Q 000454 237 KRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETA-------YCLASCRGHEGDITDLAVSSN-NALVASASNDC 307 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~Tg-------~~l~tL~gH~~~VtsLafSPD-G~lLASGS~DG 307 (1491)
-.+.||+++|..++|+| +...||+||.|.+|.||.+..+ +.+..|.||...|--|+|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35789999999999999 5678999999999999998654 346778899999999999995 56899999999
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
+|.||++.+|+.+..+. |...|+++.|+-+|. +|++++.|..|+|||.++++.+..-.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---~l~TtckDKkvRv~dpr~~~~v~e~~------------------ 212 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---LLCTTCKDKKVRVIDPRRGTVVSEGV------------------ 212 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc---eeeeecccceeEEEcCCCCcEeeecc------------------
Confidence 99999999999988888 999999999999998 99999999999999999998765531
Q ss_pred CCCCCcceEEEEECCCCCEEEEec---CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs---~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
...+.....+.|-.+|.++.+|. .+..+.+||...... + -.+..+.. ...|.---|.++.
T Consensus 213 -~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e-----P-~~~~elDt-SnGvl~PFyD~dt--------- 275 (472)
T KOG0303|consen 213 -AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE-----P-IALQELDT-SNGVLLPFYDPDT--------- 275 (472)
T ss_pred -cccCCCcceeEEeccCceeeeccccccccceeccCcccccC-----c-ceeEEecc-CCceEEeeecCCC---------
Confidence 11233445667888888666654 367899999864221 1 11122221 2233333334432
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCC
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~ 501 (1491)
.-..++|-.|+.|+.|.+...
T Consensus 276 ----------------~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 276 ----------------SIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ----------------CEEEEEecCCcceEEEEecCC
Confidence 124567788999999988763
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.56 E-value=4.2e-13 Score=147.88 Aligned_cols=300 Identities=17% Similarity=0.220 Sum_probs=205.7
Q ss_pred EEEEecCCCCeEEEEEcC--C-CCEEEEEEC----CCeEEEEECC--CCCceeee-ccCCCceEEEEecCCCC--ceEEE
Q 000454 278 LASCRGHEGDITDLAVSS--N-NALVASASN----DCIIRVWRLP--DGLPISVL-RGHTAAVTAIAFSPRPG--SVYQL 345 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSP--D-G~lLASGS~----DGtIrVWDl~--tgk~i~~L-~gHs~~VtsLaFSPdg~--s~~~L 345 (1491)
+..+.. .-.+.++.|+. + .-+||.|+. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+.. .+.+|
T Consensus 38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 344433 34677888873 2 347888865 3556665543 34333221 25889999999999873 23345
Q ss_pred EEEeCCCcEEEEccCCCC--ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCC
Q 000454 346 LSSSDDGTCRIWDARYSQ--FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~--~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~ 422 (1491)
++++ ..+++|.+.... ......+ .......+..+++++.|+. +-++|.+.+-|.+..|||+.
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L-------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVL-------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhh-------------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 4444 359999987432 1111111 0111234566899999987 67899999999999999997
Q ss_pred CCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
++ ........+-+|...|..|+|...+ .+.|++++.||.+++||++...
T Consensus 182 ~~------~~~~vkTQLIAHDKEV~DIaf~~~s-------------------------~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 182 TG------VSGTVKTQLIAHDKEVYDIAFLKGS-------------------------RDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred ec------cccceeeEEEecCcceeEEEeccCc-------------------------cceEEEecCCCcEEEEEecccc
Confidence 64 2244566788999999999999754 3689999999999999999633
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEec-cceEEEEECCC-CceEEEEe
Q 000454 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIM-DCRICVWNAAD-GSLVHSLT 579 (1491)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs~-DG~IrIWDl~t-gkll~tL~ 579 (1491)
..... |+ -.....+...++|++.. +++|+-.. ...|.|.|++. ..++..|.
T Consensus 231 HSTII------YE--------------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~ 284 (364)
T KOG0290|consen 231 HSTII------YE--------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR 284 (364)
T ss_pred cceEE------ec--------------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh
Confidence 11110 00 00113445667887754 45666443 45799999986 56788999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC------ceEEEEeeCCcceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 000454 580 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG------IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYIL 652 (1491)
Q Consensus 580 gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG------k~l~~l~~h~~~VtslafSP-DG~~LAsgs~DG~I~IW 652 (1491)
+|.+.|++|+|.|.....|+|||.|..+.|||+... .++..+. ..+.|..+.|++ .+.+|+++.. ..+.|.
T Consensus 285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 999999999999998999999999999999999653 2333444 456899999996 5677887765 444443
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.54 E-value=2.5e-13 Score=158.75 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=186.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE-cC-------CCCEEEEEECCCeEEEE
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV-SS-------NNALVASASNDCIIRVW 312 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf-SP-------DG~lLASGS~DGtIrVW 312 (1491)
.|...|.|+.|+.+...+.+++++..++-|++.+. ....+.-....|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 36677789999998877777655555555555432 22222211222211111 11 23478888999999998
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
+ ..++.-..+..|.+.|.+-.|+|+|. -|++++.||.|++|.-. |-+..++ ....
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWSrs-GMLRStl--------------------~Q~~ 145 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWSRS-GMLRSTV--------------------VQNE 145 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEecc-chHHHHH--------------------hhcC
Confidence 8 57888888899999999999999998 89999999999999843 3322222 2246
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..|.|++|.|+..-++.+- .+.+.|=.+. +...+....+|.+-|.++.|++..
T Consensus 146 ~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~---------~n~k~i~WkAHDGiiL~~~W~~~s----------------- 198 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQ-GGHISIKPLA---------ANSKIIRWRAHDGLVLSLSWSTQS----------------- 198 (737)
T ss_pred ceeEEEEECCCCCceEEec-CCeEEEeecc---------cccceeEEeccCcEEEEeecCccc-----------------
Confidence 6799999999887555443 3455554442 245677889999999999999874
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
+.+++|+.|-..+|||-.. ..+.....|..+|++++|.|+
T Consensus 199 ---------~lI~sgGED~kfKvWD~~G------------------------------~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 199 ---------NIIASGGEDFRFKIWDAQG------------------------------ANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred ---------cceeecCCceeEEeecccC------------------------------cccccCChhccceeeeeeccc-
Confidence 7999999999999998763 334445668889999999999
Q ss_pred CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
+.++.++.+ ++++ -....+.|..++|++ ++..++.|...|.+.+=
T Consensus 239 ~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeee-eeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 666666543 3441 123457799999999 67777777777776543
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=4.1e-12 Score=153.00 Aligned_cols=338 Identities=15% Similarity=0.110 Sum_probs=205.7
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecC
Q 000454 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1491)
Q Consensus 258 LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSP 337 (1491)
+++-..++.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+..+... ....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 356667899999999999999999865544456789999999999999999999999999999998754 4568899999
Q ss_pred CCCceEEEE-EEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE-ecCCce
Q 000454 338 RPGSVYQLL-SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL 415 (1491)
Q Consensus 338 dg~s~~~La-SgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG~ 415 (1491)
|++ +++ +....+.|.++|..+.+.+..+...... .......+..+..+|....+++ .-..+.
T Consensus 88 DG~---~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~-------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 88 DGK---YVYVANYEPGTVSVIDAETLEPVKTIPTGGMP-------------VDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp TTT---EEEEEEEETTEEEEEETTT--EEEEEE--EE--------------TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred CCC---EEEEEecCCCceeEeccccccceeeccccccc-------------ccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 998 555 4557899999999999888777431100 0013456778888888875554 445588
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE-EEEeCCCeEE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAI 494 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L-aSgS~DGtIr 494 (1491)
|.+.|.... ..................|.|++ .++ ++......|.
T Consensus 152 I~vVdy~d~--------~~~~~~~i~~g~~~~D~~~dpdg--------------------------ry~~va~~~sn~i~ 197 (369)
T PF02239_consen 152 IWVVDYSDP--------KNLKVTTIKVGRFPHDGGFDPDG--------------------------RYFLVAANGSNKIA 197 (369)
T ss_dssp EEEEETTTS--------SCEEEEEEE--TTEEEEEE-TTS--------------------------SEEEEEEGGGTEEE
T ss_pred EEEEEeccc--------cccceeeecccccccccccCccc--------------------------ceeeecccccceeE
Confidence 888887542 11121222233455677888875 344 4456677888
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl 574 (1491)
++|..+.+...... ... .+...+... ..|...=.--+....+.+.++.-....+.+|+..+++.
T Consensus 198 viD~~~~k~v~~i~---------~g~------~p~~~~~~~-~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 198 VIDTKTGKLVALID---------TGK------KPHPGPGAN-FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp EEETTTTEEEEEEE----------SS------SBEETTEEE-EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred EEeeccceEEEEee---------ccc------ccccccccc-ccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 99988644221100 000 000001111 11222100111223344444444445677899999999
Q ss_pred EEEEeCCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEeCCCCceEEEEeeCCc-ceEEEEEcCCCCEEEEE--eCCC
Q 000454 575 VHSLTGHTESTYVLDVHPFNPRIAMSA----GYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILS--DDVG 647 (1491)
Q Consensus 575 l~tL~gHs~~VtsLafSPdd~~lLaSg----S~DGtIrIWDl~tGk~l~~l~~h~~-~VtslafSPDG~~LAsg--s~DG 647 (1491)
++++....++ .-+..||+ ++++... ...+.|.|+|..+.+.+..+....+ .+..+.|++||+++.++ ..+|
T Consensus 262 v~~I~~~G~g-lFi~thP~-s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 262 VKTIPTQGGG-LFIKTHPD-SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEEEECCCCc-ceeecCCC-CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 9999987777 77888995 4555444 5568999999999988887753332 58899999999987765 3445
Q ss_pred cEEEEECCCCccccccc
Q 000454 648 QLYILNTGQGESQKDAK 664 (1491)
Q Consensus 648 ~I~IWdl~tG~~~~~~~ 664 (1491)
.|.|||..+.+..+.++
T Consensus 340 ~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEEEE
Confidence 79999999998876654
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=1.6e-12 Score=145.25 Aligned_cols=258 Identities=18% Similarity=0.218 Sum_probs=187.8
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+.--..+|+|.||++|+..+|.+.....|.||..... +..+++..|...|+.|+|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334579999999999999999999999999988654 5788999999999999999999999999999999999984
Q ss_pred CC---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 316 DG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 316 tg---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
.+ ++..++..+...+++|.|+|.++ .|++|+.-..|.||-++...-- ........+..
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENdW----------------WVsKhikkPir 146 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQENDW----------------WVSKHIKKPIR 146 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccce----------------ehhhhhCCccc
Confidence 33 56666777999999999999987 8999999999999876543211 11112234567
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..|.+++|+|++-+|++|+.|+.++||..-- +.+..-. .|.
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~k~rVfSayI----------K~Vdekp-----------ap~------------------ 187 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAYI----------KGVDEKP-----------APT------------------ 187 (361)
T ss_pred cceeeeeccCCcceecccccCcceeEEEEee----------eccccCC-----------CCC------------------
Confidence 7899999999999999999999999997621 1110000 000
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
-|+-+ .+.+..+.......+.|..+.|+|+|
T Consensus 188 ----------------------pWgsk---------------------------~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 188 ----------------------PWGSK---------------------------MPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred ----------------------CCccC---------------------------CcHHHHHHhhccCCCceeeeEeCCCC
Confidence 01100 00111122222456779999999999
Q ss_pred CEEEEEeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 553 RFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
..|+-.+.|..+.+-|..... .+..+....-+..++.|-. ...++.+++|.
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is--e~~vv~ag~~c 270 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS--ENSVVAAGYDC 270 (361)
T ss_pred CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec--CCceeecCCCC
Confidence 999999999999999987664 3444433335666676654 33444566663
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2e-12 Score=139.59 Aligned_cols=279 Identities=15% Similarity=0.247 Sum_probs=192.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------C-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMET---------A-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T---------g-~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
..|.+-+++|.+++|+.|..+|+|-+..+.. | ..+...++|.++|..++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4677889999999999999999999999853 2 3345568999999999998 44677775 59999998
Q ss_pred CCCCCc------eeeec--cC-----CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 314 LPDGLP------ISVLR--GH-----TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 314 l~tgk~------i~~L~--gH-----s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+..... +..+. -| --.|+++-..|..+ -++.++.|+.+..||+++|+....+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en---Si~~AgGD~~~y~~dlE~G~i~r~~------------ 152 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN---SILFAGGDGVIYQVDLEDGRIQREY------------ 152 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC---cEEEecCCeEEEEEEecCCEEEEEE------------
Confidence 754321 11111 12 23688999999876 5777779999999999999877666
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC-CceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sVafSpdg~as~ 459 (1491)
.+|...|.+++--.....+++|+.||+++|||.++.+......+.+....+..|-+ .|-+++.+.
T Consensus 153 --------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------ 218 (325)
T KOG0649|consen 153 --------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------ 218 (325)
T ss_pred --------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC------
Confidence 56999999999855556789999999999999998766544444333333444433 455665543
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
+.+++| ....+.+|.+++.. ...+.+.
T Consensus 219 ----------------------dWlvCG-gGp~lslwhLrsse------------------------------~t~vfpi 245 (325)
T KOG0649|consen 219 ----------------------DWLVCG-GGPKLSLWHLRSSE------------------------------STCVFPI 245 (325)
T ss_pred ----------------------ceEEec-CCCceeEEeccCCC------------------------------ceEEEec
Confidence 355554 45678999998633 1223344
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
...+..+.|.. ..+++++....|.-|.+ +|.+-..........+...|+..--+++..++..+.+.|+
T Consensus 246 pa~v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 PARVHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 55667777754 46777877788888886 4555555554444455555554222455556666666554
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.1e-12 Score=161.73 Aligned_cols=233 Identities=17% Similarity=0.135 Sum_probs=160.2
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCc--eeeeccCCCceEEEEecCC
Q 000454 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLP--ISVLRGHTAAVTAIAFSPR 338 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~--i~~L~gHs~~VtsLaFSPd 338 (1491)
+..|.|||.... ....+..|...|.+++|+|||+.||.++.+ ..|++||+.++.. +..+.+ ....++|+||
T Consensus 183 ~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 579999998644 456677788899999999999999988754 4699999988764 333333 3457899999
Q ss_pred CCceEEEEEE-eCCCcEEEE--ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCc
Q 000454 339 PGSVYQLLSS-SDDGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDT 414 (1491)
Q Consensus 339 g~s~~~LaSg-S~DGtVrIW--Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG 414 (1491)
+. .|+.+ +.+|.+.|| |+.++.. ..+ ..+...+...+|+|||+.|+..+ .+|
T Consensus 259 G~---~La~~~~~~g~~~Iy~~d~~~~~~-~~l--------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 259 GS---RLAFASSKDGVLNIYVMGANGGTP-SQL--------------------TSGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred CC---EEEEEEecCCcEEEEEEECCCCCe-Eee--------------------ccCCCCcCCEEECCCCCEEEEEECCCC
Confidence 97 66655 468876665 5554432 111 11334567899999999777654 578
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
...||++.... .....+ .+.. ....|+|++ +.|+..+.++ +.
T Consensus 315 ~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~SpDG--------------------------~~ia~~~~~~-i~ 356 (429)
T PRK01742 315 SPQVYRMSASG--------GGASLV-GGRG--YSAQISADG--------------------------KTLVMINGDN-VV 356 (429)
T ss_pred CceEEEEECCC--------CCeEEe-cCCC--CCccCCCCC--------------------------CEEEEEcCCC-EE
Confidence 88888874311 111112 2332 456788876 5676666655 55
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC--CCC
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA--ADG 572 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl--~tg 572 (1491)
+||+.++... .+... .....+.|+|||++|++++.++.+.+|.+ .+|
T Consensus 357 ~~Dl~~g~~~------------------------------~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 357 KQDLTSGSTE------------------------------VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred EEECCCCCeE------------------------------EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 6888764310 00000 01235779999999999999998888875 468
Q ss_pred ceEEEEeCCCCCeEEEEEecC
Q 000454 573 SLVHSLTGHTESTYVLDVHPF 593 (1491)
Q Consensus 573 kll~tL~gHs~~VtsLafSPd 593 (1491)
..++.+.+|.+.+..++|+|.
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEccCCCCCCCCcccCCC
Confidence 889999999998999999983
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=2.8e-12 Score=161.84 Aligned_cols=279 Identities=16% Similarity=0.233 Sum_probs=190.7
Q ss_pred EECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 312 WDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
|++ .|..++.+..|...|..++.++... .+|++|+.||+|++|+.+.-..-.. ...........
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~--s~FvsgS~DGtVKvW~~~k~~~~~~-------------s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHT--SLFVSGSDDGTVKVWNLRKLEGEGG-------------SARSELTYSPE 1097 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCC--ceEEEecCCceEEEeeehhhhcCcc-------------eeeeeEEEecc
Confidence 664 5888899999999999999988763 2899999999999999864321100 00011122235
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC-CCceEE-EEccCccccccccccCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYV-QFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sV-afSpdg~as~~s~~~~~~~~ 469 (1491)
...+.++.+.+.|..+|+++.||.|++.++...+... ...........+. +.+..+ +|...
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~--~~~~~~ri~n~~~~g~vv~m~a~~~~--------------- 1160 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK--RVATQVRIPNLKKDGVVVSMHAFTAI--------------- 1160 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccc--ceeeeeecccccCCCceEEeeccccc---------------
Confidence 6778999999999999999999999999986421100 0000111111111 112111 11111
Q ss_pred CCccccccccCCC-eEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000454 470 STPKFKNSWFCHD-NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 470 ~~~~~~~~~~~~~-~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1491)
... .++.+..-+.|..||++... ..|.. ......+.|++++.
T Consensus 1161 ----------~~S~~lvy~T~~~~iv~~D~r~~~-----~~w~l----------------------k~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1161 ----------VQSHVLVYATDLSRIVSWDTRMRH-----DAWRL----------------------KNQLRHGLVTSIVI 1203 (1431)
T ss_pred ----------ccceeEEEEEeccceEEecchhhh-----hHHhh----------------------hcCccccceeEEEe
Confidence 122 78888889999999998633 12221 12234567999999
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEe-CCCCCeEEEEEecCCC--cEEEEEe--CCCcEEEEeCCCCceEEEEee
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP--RIAMSAG--YDGKTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~-gHs~~VtsLafSPdd~--~lLaSgS--~DGtIrIWDl~tGk~l~~l~~ 623 (1491)
+|.+.++++|+..|.+.+||++-+.++..+. ++..+|..+..+|.-+ ...++++ ..+.|.+|++.+|.+..++..
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 9999999999999999999999888888774 4557888998888655 4554444 477899999999977776654
Q ss_pred CCc-------------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 000454 624 SRF-------------------RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 624 h~~-------------------~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
... ....+++..-+.++.+|+.|+.|+.||....+..
T Consensus 1284 s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1284 SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 311 1223455556678899999999999999776543
No 205
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.2e-11 Score=146.87 Aligned_cols=318 Identities=14% Similarity=0.186 Sum_probs=208.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-----EC-----CCeEEEE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-----SN-----DCIIRVW 312 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASG-----S~-----DGtIrVW 312 (1491)
...+...+++++|+++|.+ .+..|+|++..++..+.+...- .++++-|+|.|++|.+- .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 3457888999999988876 4578999999988655444432 89999999999998763 11 2347899
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
++.++.....+......-+++.|++|.. |++--..+.|.+|++...+.... .-+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~---------------------kl~~ 165 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH---------------------KLSV 165 (566)
T ss_pred eeccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee---------------------eeec
Confidence 9999665555543333336899999975 44444456799999876332211 1256
Q ss_pred cceEEEEECCCC--CEEEE-----ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 393 HQIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 393 ~~V~slafSPDG--~~Las-----Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
..|..+.++|.+ ..+|+ ++.-+.|+||....... ...+..-.-....-..+.|.+.|.
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~------~~~~a~ksFFkadkvqm~WN~~gt--------- 230 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ------HQPVANKSFFKADKVQMKWNKLGT--------- 230 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc------cchhhhccccccceeEEEeccCCc---------
Confidence 678888998874 34443 45567899998742110 111111111112223455665442
Q ss_pred CCCCCCccccccccCCCeEEEEeC--C---------CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSR--D---------GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~--D---------GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
..|+.++. | .++.+.++.. ....
T Consensus 231 ----------------~LLvLastdVDktn~SYYGEq~Lyll~t~g------------------------------~s~~ 264 (566)
T KOG2315|consen 231 ----------------ALLVLASTDVDKTNASYYGEQTLYLLATQG------------------------------ESVS 264 (566)
T ss_pred ----------------eEEEEEEEeecCCCccccccceEEEEEecC------------------------------ceEE
Confidence 12222222 2 2233333331 1112
Q ss_pred eccCCCCCeeEEEEcCCCCEEEE--EeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEE
Q 000454 535 RILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIV 609 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaS--Gs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~---DGtIrI 609 (1491)
......++|.++.|+|+|+-+++ |-+-..+.|||++ +.++..+ ..++-+++-|+| .+++|+.+|. -|.|-|
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEE
Confidence 22334678999999999987665 5577789999984 6666665 356678899999 5566666664 478999
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeC------CCcEEEEECC
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNTG 655 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~------DG~I~IWdl~ 655 (1491)
||+.+.+++..+.... -+-+.|+|||+++++++. |..++||+..
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9999999998887443 445899999999998754 6889999973
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.1e-12 Score=146.22 Aligned_cols=356 Identities=14% Similarity=0.097 Sum_probs=204.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 290 sLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
-++|||+|++||+++.- .+.|-|..+-+..+.+.. -..|.-|.|..+.- +.|.....++.|.+|++...+....+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~--~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC--HILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce--eeeeeeeccceEEEEEeecceeEEEec
Confidence 46799999999999865 788889888776665543 45678899998864 467778889999999998777665552
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE-EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceE
Q 000454 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF-VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1491)
Q Consensus 370 ~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L-asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1491)
.....+..++|+|||+.| .+..-+-.|.||.+.+. ....+.-....+..
T Consensus 89 --------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----------~~~~~~~pK~~~kg 138 (447)
T KOG4497|consen 89 --------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----------KGYLLPHPKTNVKG 138 (447)
T ss_pred --------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----------eeEEecccccCcee
Confidence 256678999999999655 45566889999999752 22333444556788
Q ss_pred EEEccCccccccccccCCCCCCCcccccccc-----C-CCeEEE---EeCC-CeEEEEecCCCCCCccccccccccccCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWF-----C-HDNIVT---CSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~-----~-~~~LaS---gS~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~~ 518 (1491)
++|+|+|..........-+..-.......|. . +..=.+ -+.| ..+.+||--- ..
T Consensus 139 ~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L--------------ey-- 202 (447)
T KOG4497|consen 139 YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL--------------EY-- 202 (447)
T ss_pred EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh--------------hh--
Confidence 9999987321111000000000000000000 0 000000 0111 1233332110 00
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCC--------------
Q 000454 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES-------------- 584 (1491)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~-------------- 584 (1491)
..-...-.-++..++|+|.+++|++|+.|+.++|.+--+.+....+- |-..
T Consensus 203 --------------kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 203 --------------KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred --------------eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 00011223456777777777777777777777777665554443321 1110
Q ss_pred ------eEEEEEecCCCcEEEEEeCCCcEEEEeCC--------------CCceEEEEeeCCcceEEEEEcCCCCEEEEEe
Q 000454 585 ------TYVLDVHPFNPRIAMSAGYDGKTIVWDIW--------------EGIPIRIYEISRFRLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 585 ------VtsLafSPdd~~lLaSgS~DGtIrIWDl~--------------tGk~l~~l~~h~~~VtslafSPDG~~LAsgs 644 (1491)
..++.|.|. |-...+|... ..++...+.....++.-++||+|..++|+-.
T Consensus 268 ~~~ql~~~cLsf~p~----------~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrn 337 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPT----------DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRN 337 (447)
T ss_pred chhhhcccccccCCC----------ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeec
Confidence 123333331 1111222221 0111111222234677799999999999865
Q ss_pred C--CCcEEEEECCCCcccccc-----cceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhh
Q 000454 645 D--VGQLYILNTGQGESQKDA-----KYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTM 717 (1491)
Q Consensus 645 ~--DG~I~IWdl~tG~~~~~~-----~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l 717 (1491)
+ -..+++||+..-+....+ .....|.|..-.|+.-..+..| ++|.+ .+ |-.-+.|
T Consensus 338 d~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srL--------Y~W~p-sg-~~~V~vP-------- 399 (447)
T KOG4497|consen 338 DKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRL--------YFWAP-SG-PRVVGVP-------- 399 (447)
T ss_pred CCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceE--------EEEcC-CC-ceEEecC--------
Confidence 4 478999999877653322 3445677777667766555554 57773 33 2122223
Q ss_pred hhhcccccccEEEcCCCCeEEEe
Q 000454 718 YQQRRLGALGIEWRPSSLKLAVG 740 (1491)
Q Consensus 718 ~q~~~~~vl~lafSPDG~~LAvg 740 (1491)
+....+..+.|.-+|..++..
T Consensus 400 --~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 400 --KKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred --CCCceeeeEEecCCCcEEEEE
Confidence 233556779999999999987
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.4e-13 Score=156.97 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=154.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeecc-
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 325 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~g- 325 (1491)
.+++|+.+|..|++|+.||+++||++.....+.....|...|.++.|+|||++||+.+.| ..+||++.+|.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999898888888999999999999999999999999 899999999987776652
Q ss_pred -CCCceEEEEecCCCCc--eEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC
Q 000454 326 -HTAAVTAIAFSPRPGS--VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 326 -Hs~~VtsLaFSPdg~s--~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP 402 (1491)
-......+.|+.++.. .+.++....-+.|+.|++........+ ...........|.+++.++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l---------------~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL---------------RLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc---------------chhhhhhccCcceeEEEcC
Confidence 2345667888877621 223333444567777776543321111 0111122345799999999
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~ 482 (1491)
+|+++|.|+.||.|.|++..+.+ .....-..|...|+.+.|+|+. +
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pds--------------------------r 337 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDS--------------------------R 337 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCc--------------------------C
Confidence 99999999999999999986532 2333456899999999999985 4
Q ss_pred eEEEEeCCCeEEEEecC
Q 000454 483 NIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 483 ~LaSgS~DGtIrIWDl~ 499 (1491)
++++.+.+..+.+..+.
T Consensus 338 ~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 338 YLASVSSDNEAAVTKLA 354 (398)
T ss_pred cccccccCCceeEEEEe
Confidence 66666777776666544
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-12 Score=161.32 Aligned_cols=235 Identities=15% Similarity=0.080 Sum_probs=162.7
Q ss_pred CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
+..|.|||..... ...+..|...|.+++|+|+++ .|+.++.+ ..|.+||+.++.......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVAS------------- 245 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEec-------------
Confidence 4689999985444 566777888999999999998 67766543 369999998775322110
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEE--eCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVW--Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.......++|+|||+.|+++. .+|.+.|| |+.+ .....+..+...+....|+|++
T Consensus 246 --------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~----------~~~~~lt~~~~~~~~~~wSpDG---- 303 (429)
T PRK01742 246 --------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG----------GTPSQLTSGAGNNTEPSWSPDG---- 303 (429)
T ss_pred --------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC----------CCeEeeccCCCCcCCEEECCCC----
Confidence 111233689999999888764 57766655 5432 1234456677778899999987
Q ss_pred cccccCCCCCCCccccccccCCCeEE-EEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~La-SgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|+ +...+|...||++.... .....+ .
T Consensus 304 ----------------------~~i~f~s~~~g~~~I~~~~~~~----------------------------~~~~~l-~ 332 (429)
T PRK01742 304 ----------------------QSILFTSDRSGSPQVYRMSASG----------------------------GGASLV-G 332 (429)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECCC----------------------------CCeEEe-c
Confidence 3444 45567888999765311 001111 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCc
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGI 616 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl--~tGk 616 (1491)
+.. ..++|+|||++|++++.++ |.+||+.+++.......+ ....+.|+| ++++|+.++.+|.+.+|.+ .+|.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC
Confidence 221 3468999999999887764 666999988765433332 235678999 6677778888998888876 3688
Q ss_pred eEEEEeeCCcceEEEEEcCC
Q 000454 617 PIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 617 ~l~~l~~h~~~VtslafSPD 636 (1491)
.+..+..+.+.+...+|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 88888877888899999984
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=5.1e-11 Score=143.58 Aligned_cols=314 Identities=14% Similarity=0.100 Sum_probs=188.5
Q ss_pred cccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC
Q 000454 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-ND 306 (1491)
Q Consensus 228 ~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS-~D 306 (1491)
.+..+.+.+.++......-..++|+|||+++.+++.||.|.++|+.+++.+++++.. ....++++++||++++++. ..
T Consensus 21 iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEET
T ss_pred EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCC
Confidence 345667888899866554455789999999999999999999999999999999854 4568899999999998776 57
Q ss_pred CeEEEEECCCCCceeeeccC-------CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccC
Q 000454 307 CIIRVWRLPDGLPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gH-------s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g 379 (1491)
+.|.|+|.++.++++.+... ...+.+|..+|... .++++.-..+.|.+.|............
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~--~fVv~lkd~~~I~vVdy~d~~~~~~~~i--------- 168 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP--EFVVNLKDTGEIWVVDYSDPKNLKVTTI--------- 168 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS--EEEEEETTTTEEEEEETTTSSCEEEEEE---------
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCC--EEEEEEccCCeEEEEEeccccccceeee---------
Confidence 99999999999998877532 34678888888876 2344444558787778766543322211
Q ss_pred CCCCCCCCCCCCCcceEEEEECCCCCEEEEe-cCCceEEEEeCCCCCCCCCCCCCceeeee----cCCCCCceEEEEccC
Q 000454 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVL----SGHENDVNYVQFSGC 454 (1491)
Q Consensus 380 ~~~~~~~s~~~h~~~V~slafSPDG~~LasG-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l----~gH~~~V~sVafSpd 454 (1491)
..........|+|++++++++ .....|.++|..+.+ .+..+ ..|...+..+- +|.
T Consensus 169 ----------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k---------~v~~i~~g~~p~~~~~~~~p-hp~ 228 (369)
T PF02239_consen 169 ----------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK---------LVALIDTGKKPHPGPGANFP-HPG 228 (369)
T ss_dssp ----------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE---------EEEEEE-SSSBEETTEEEEE-ETT
T ss_pred ----------cccccccccccCcccceeeecccccceeEEEeeccce---------EEEEeecccccccccccccc-CCC
Confidence 123346788999999987664 556789999986532 22221 12333333321 111
Q ss_pred ccccccccccCCCCCCCccccccc---cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSW---FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~---~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 531 (1491)
. ...| ......++.-....+.+||.... .
T Consensus 229 ~-------------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-----------------------------k 260 (369)
T PF02239_consen 229 F-------------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-----------------------------K 260 (369)
T ss_dssp T-------------------EEEEEEEBSSSSEEEEEE--TTT-STTTBT-----------------------------S
T ss_pred c-------------------ceEEeeccccceecccccCCccccchhhcC-----------------------------e
Confidence 0 0000 00011212222223333443321 1
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEE----eccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCC-
Q 000454 532 PRQRILPTPRGVNMIVWSLDNRFVLAA----IMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDG- 605 (1491)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~LaSG----s~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~lLaSgS~DG- 605 (1491)
.+..+.....+ .-+..+|++++|++. .....|.|+|..+.+.+..+... ...+..+.|++++..+.+|.-..+
T Consensus 261 vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 261 VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 22333333334 567889999999998 45689999999999888877532 235889999997776666666555
Q ss_pred cEEEEeCCCCceEEEEe
Q 000454 606 KTIVWDIWEGIPIRIYE 622 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~ 622 (1491)
.|.|||..+.+.+..+.
T Consensus 340 ~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEEEE
Confidence 89999999999998887
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.4e-12 Score=150.78 Aligned_cols=201 Identities=19% Similarity=0.283 Sum_probs=148.7
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 289 tsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.+++|+.+|..|++|+.||++|||++.+...+.....|.+.|.++.|+||++ .|++.+.| ..+||++.++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk---~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK---FLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc---EEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999999998888889999999999999998 89999999 8999999998665554
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC---C--EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---T--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG---~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.- ......+..|.|+.|+ . +++....-+.|+.|++
T Consensus 224 t~------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~---------------------- 263 (398)
T KOG0771|consen 224 TP------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI---------------------- 263 (398)
T ss_pred CC------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------
Confidence 10 1223344556666554 1 1111111222222222
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
.+|+-.. .
T Consensus 264 --------------------------------------------------~~w~~~~------~---------------- 271 (398)
T KOG0771|consen 264 --------------------------------------------------SLWSGSN------F---------------- 271 (398)
T ss_pred --------------------------------------------------eeecccc------c----------------
Confidence 1221100 0
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEe
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
............|++++.|+||+++|.|+.||.|-|++..+.++++.. +.|...|+.|.|+| +.+++++.+
T Consensus 272 -------l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svS 343 (398)
T KOG0771|consen 272 -------LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVS 343 (398)
T ss_pred -------cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccc
Confidence 011112223346899999999999999999999999999998887765 57999999999999 778888888
Q ss_pred CCCcEEEEeCC
Q 000454 603 YDGKTIVWDIW 613 (1491)
Q Consensus 603 ~DGtIrIWDl~ 613 (1491)
.|..+.|..+.
T Consensus 344 s~~~~~v~~l~ 354 (398)
T KOG0771|consen 344 SDNEAAVTKLA 354 (398)
T ss_pred cCCceeEEEEe
Confidence 88888887764
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=3.9e-11 Score=136.69 Aligned_cols=316 Identities=13% Similarity=0.142 Sum_probs=210.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCCce
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPI 320 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D--GtIrVWDl~tgk~i 320 (1491)
...|..+.|..+...|..|+.|| -++|.................|.-+-|+ ..+||..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 45677888999999999999998 5788876554422222233456666676 4467766654 34899998888777
Q ss_pred eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 321 ~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
..+. ....|.+|.+..+ +|+++-.+. |.|||+++.+.+.++.. ..++...+.++++
T Consensus 82 Ce~~-fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t-----------------~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIET-----------------TPPNPKGLCALSP 137 (391)
T ss_pred EEEe-cCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhc-----------------cCCCccceEeecc
Confidence 7665 5678999999876 566666555 99999999988877632 1234556777777
Q ss_pred CCCCCEEEEec--CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SPDG~~LasGs--~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
++.+.++|.-+ ..|.|.|||+.+ .+.+..+..|.+.+.+++|+++|
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~n---------l~~v~~I~aH~~~lAalafs~~G----------------------- 185 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTIN---------LQPVNTINAHKGPLAALAFSPDG----------------------- 185 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEccc---------ceeeeEEEecCCceeEEEECCCC-----------------------
Confidence 77778888643 468999999965 55677888999999999999997
Q ss_pred cCCCeEEEEeCCCe-EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 479 FCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 479 ~~~~~LaSgS~DGt-IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
.+|+|+|..|+ |||+.+.+++.... +.+ -.....|.+++|+|++.+|++
T Consensus 186 ---~llATASeKGTVIRVf~v~~G~kl~e---FRR------------------------G~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 186 ---TLLATASEKGTVIRVFSVPEGQKLYE---FRR------------------------GTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ---CEEEEeccCceEEEEEEcCCccEeee---eeC------------------------CceeeEEEEEEECCCCCeEEE
Confidence 69999999998 57888876542211 000 001345889999999999999
Q ss_pred EeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE--EEEe-CCCcEEEEeCCCCceEEEEeeCCcce-EEEEE
Q 000454 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA--MSAG-YDGKTIVWDIWEGIPIRIYEISRFRL-VDGKF 633 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lL--aSgS-~DGtIrIWDl~tGk~l~~l~~h~~~V-tslaf 633 (1491)
.+..++|+||-+.... ......+-....| .+.+. +++- -.+.-.+||.... ........... ..+.+
T Consensus 236 sS~TeTVHiFKL~~~~----~~~~~~p~~~~~~---~~~~sk~~~sylps~V~~~~~~~R~--FAt~~l~~s~~~~~~~l 306 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS----NNPPESPTAGTSW---FGKVSKAATSYLPSQVSSVLDQSRK--FATAKLPESGRKNICSL 306 (391)
T ss_pred ecCCCeEEEEEecccc----cCCCCCCCCCCcc---cchhhhhhhhhcchhhhhhhhhccc--eeEEEccCCCccceEEe
Confidence 9999999999986543 1111111000000 00000 0110 0122234555332 23332222222 23344
Q ss_pred c--CCCCEEEEEeCCCcEEEEECCC
Q 000454 634 S--PDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 634 S--PDG~~LAsgs~DG~I~IWdl~t 656 (1491)
. +...++.+++.||.++.|.+..
T Consensus 307 ~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 307 SSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred eccCCCCEEEEEEcCCeEEEEEcCC
Confidence 4 5788999999999999999854
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.44 E-value=6.3e-12 Score=147.20 Aligned_cols=267 Identities=16% Similarity=0.249 Sum_probs=184.4
Q ss_pred cCCCceEEEEecCCCCceEEEEEEeCCCcEEEE-ccCCCCccceeecCCCCCcccC-CCCCCCCCCCCCCcceEEEEECC
Q 000454 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW-DARYSQFSPRIYIPRPSDAVAG-RNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 325 gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW-Dl~tg~~~~~i~~~~~~~~~~g-~~~~~~~s~~~h~~~V~slafSP 402 (1491)
.|...|.++.|+.... ++.++.|..+.+| ++.+.. ...+..+. +.+.. .......... -.
T Consensus 12 r~~e~vc~v~w~~~ee----i~~~~dDh~~~~~~~~~~~s-~~~~~~p~--df~pt~~h~~~rs~~~-----------g~ 73 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE----IYFVSDDHQIFKWSDVSRDS-VEVAKLPD--DFVPTDMHLGGRSSGG-----------GK 73 (737)
T ss_pred ccceeEEeecccccce----EEEeccCceEEEeecccchh-hhhhhCCc--ccCCccccccccccCC-----------CC
Confidence 4667778999998864 5555555555555 554332 22222111 00000 0000000000 01
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~ 482 (1491)
....|+.++.||.+.|.+-. .+.-..+.+|.+.|.+-.|+|+| .
T Consensus 74 ~~d~~~i~s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dG--------------------------t 117 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDG--------------------------A 117 (737)
T ss_pred CcceEEEEcCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCC--------------------------c
Confidence 23467888889998887653 34455678999999999999997 5
Q ss_pred eEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc
Q 000454 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1491)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG 562 (1491)
-|++++.||.|++|.-.. .....+......|.|++|.|+..-++.+ ..+
T Consensus 118 gLlt~GEDG~iKiWSrsG------------------------------MLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 118 GLLTAGEDGVIKIWSRSG------------------------------MLRSTVVQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred eeeeecCCceEEEEeccc------------------------------hHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence 799999999999996431 1222344456789999999998877665 455
Q ss_pred eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEE
Q 000454 563 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 642 (1491)
Q Consensus 563 ~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAs 642 (1491)
.+.|=.+.....+-.+++|.+-|.++.|+| -..++++||.|-..+|||. -|..+..-..|..+|++++|.|| +.+++
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceee
Confidence 777877777777788899999999999999 6788999999999999998 67887777778889999999999 66666
Q ss_pred EeCCCcEEEEECCCCcccccccceeeecCCCcceEEc-cCCCEE
Q 000454 643 SDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQD-TYGNVL 685 (1491)
Q Consensus 643 gs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d-~~G~vL 685 (1491)
++. .++++=....| ....+.|++||..++.. ..|.++
T Consensus 244 ~S~-nt~R~~~p~~G-----SifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 244 WSY-NTARFSSPRVG-----SIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eee-eeeeecCCCcc-----ceEEEEEcCCCceeeccccCceEE
Confidence 665 45553333333 45677899999988765 444443
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=7.1e-13 Score=153.59 Aligned_cols=278 Identities=19% Similarity=0.282 Sum_probs=206.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
..-+.+.|+.+|+.|+.|+.-|.|-.+|+.++.+...+.. ...|.++.|-.+.+++|++ ....+.||| ..|..++.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeeh
Confidence 3447799999999999999999999999999999998873 5679999999999888887 456899999 578888888
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD 403 (1491)
+.| ..|..+.|.|.- ++|++++..|.++.-|+.+|+.+..+.. ..+.+..++-+|-
T Consensus 207 k~~-~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t--------------------~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRT--------------------GAGRTDVMKQNPY 262 (545)
T ss_pred hhc-Cchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHc--------------------cCCccchhhcCCc
Confidence 865 568999999974 4888999999999999999988776632 2333444444444
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
...+-+|..
T Consensus 263 NaVih~Ghs----------------------------------------------------------------------- 271 (545)
T KOG1272|consen 263 NAVIHLGHS----------------------------------------------------------------------- 271 (545)
T ss_pred cceEEEcCC-----------------------------------------------------------------------
Confidence 444444444
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1491)
.|+|.+|.+.. ..++..+..|.++|.+|++.++|+|+||.+.|..
T Consensus 272 ------nGtVSlWSP~s-----------------------------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 272 ------NGTVSLWSPNS-----------------------------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred ------CceEEecCCCC-----------------------------cchHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence 45555554432 1345556778889999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC-CC--CceEEEEeeC--CcceEEEEEcCCCC
Q 000454 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI-WE--GIPIRIYEIS--RFRLVDGKFSPDGA 638 (1491)
Q Consensus 564 IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl-~t--Gk~l~~l~~h--~~~VtslafSPDG~ 638 (1491)
|+|||++....++++.. .-+...++||. +-+++++....|.||.= -. +..-..+-.| .+.|.++.|.|-..
T Consensus 317 ~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq---kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRT-PHPASNLSLSQ---KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred eeEeeeccccccceeec-CCCcccccccc---ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 99999999887777665 34456788865 33334666678999952 22 1222222222 34899999999998
Q ss_pred EEEEEeCCCcEEEEECCCCc
Q 000454 639 SIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 639 ~LAsgs~DG~I~IWdl~tG~ 658 (1491)
.|-+|-..|--.|.=.+.|+
T Consensus 393 vLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 393 VLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred eeeccccCCceeEeccCCCC
Confidence 99888877766666555554
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.2e-12 Score=149.99 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=138.6
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee-ccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L-~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+.+.|.||.+.|.|+.|+.+|.+|++|+.|-.|.|||.-.-+++..+ .+|.+.|.++.|-|...+ .++++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCC-eEEEeccCcceEE
Confidence 34678899999999999999999999999999999999888887776 489999999999998643 4899999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCC-CC
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ-PN 433 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~-~~ 433 (1491)
++|+...+.-..- .....+......|...|..++..|++ ..|.+++.||+|+-||++.+..-.... -.
T Consensus 121 lfdl~~~~~~~~d----------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 121 LFDLDSSKEGGMD----------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EEecccccccccc----------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 9999753311110 11112233445688889999999988 889999999999999998643211111 11
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
..+..+...--...++.++|.. +.+|++|+.|-.+++||.+
T Consensus 191 ~~l~ny~~~lielk~ltisp~r-------------------------p~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSR-------------------------PYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHHHhchhhheeeeeeecCCC-------------------------CceEEecCCCchhhhhhhh
Confidence 1111122222345567777653 5689999999999999965
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.2e-11 Score=144.09 Aligned_cols=298 Identities=13% Similarity=0.129 Sum_probs=205.3
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~L-ATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrV 311 (1491)
.++++-|. |....+.|..+|||+|| |||..-..|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+
T Consensus 42 ieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 42 IELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred HHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeee
Confidence 33444443 78889999999999987 67777889999999876654443323445555566666666666677888877
Q ss_pred EECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 312 WDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
... -|.... ++ -...-..|+++.-.- -|++++....|.-+++..|.++..+.. .
T Consensus 121 Hak-~G~hy~-~R-IP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------~ 174 (703)
T KOG2321|consen 121 HAK-YGRHYR-TR-IPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------D 174 (703)
T ss_pred hhh-cCeeee-ee-cCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc--------------------c
Confidence 652 222111 11 112234455554332 355555566688899999988776632 3
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
...+++|..++-..+|++|+.+|.|.+||.+... .+..+..... |.+ .|
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks---------rv~~l~~~~~-v~s---~p------------------ 223 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS---------RVGTLDAASS-VNS---HP------------------ 223 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhh---------hheeeecccc-cCC---Cc------------------
Confidence 4679999999999999999999999999997521 1111110000 000 00
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
.......|+++.|+.+
T Consensus 224 ----------------------------------------------------------------g~~~~~svTal~F~d~ 239 (703)
T KOG2321|consen 224 ----------------------------------------------------------------GGDAAPSVTALKFRDD 239 (703)
T ss_pred ----------------------------------------------------------------cccccCcceEEEecCC
Confidence 0011235899999999
Q ss_pred CCEEEEEeccceEEEEECCCCceEEEEe-CCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceE
Q 000454 552 NRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~tgkll~tL~-gHs~~VtsLafSPdd~~-lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vt 629 (1491)
|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+.+.. .|+ ......++|||-.+|+....+.. ...+.
T Consensus 240 gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEp-t~~lN 317 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASIEP-TSDLN 317 (703)
T ss_pred ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE-ecchHHhhhcccccCCceeeccc-cCCcC
Confidence 9999999999999999999988776542 33457889999775443 443 44566899999999999999884 44599
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 630 DGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 630 slafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
++|+-|++.+++++-.++.+..|=+
T Consensus 318 D~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 318 DFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ceeeecCCceEEEecCCCcceeEEc
Confidence 9999999999999988887766655
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=5.9e-11 Score=135.27 Aligned_cols=239 Identities=15% Similarity=0.213 Sum_probs=168.9
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L 407 (1491)
..+..+.|..+.. .|..|+.|| .++|....-..... .......|.-+-|+.. ++
T Consensus 6 ~ti~~~~~Nqd~~---~lsvGs~~G-yk~~~~~~~~k~~~--------------------~~~~~~~IvEmLFSSS--Lv 59 (391)
T KOG2110|consen 6 PTINFIGFNQDST---LLSVGSKDG-YKIFSCSPFEKCFS--------------------KDTEGVSIVEMLFSSS--LV 59 (391)
T ss_pred cceeeeeecccee---EEEccCCCc-eeEEecCchHHhhc--------------------ccCCCeEEEEeecccc--ee
Confidence 4566777888875 777788887 57776653322100 1113344666667644 44
Q ss_pred EEecCC--ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEE
Q 000454 408 VTGSSD--TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1491)
Q Consensus 408 asGs~D--G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~La 485 (1491)
|..+.+ ..++++++.+. ..+..+ .....|.+|.+.. ++|+
T Consensus 60 aiV~~~qpr~Lkv~~~Kk~---------~~ICe~-~fpt~IL~VrmNr----------------------------~RLv 101 (391)
T KOG2110|consen 60 AIVSIKQPRKLKVVHFKKK---------TTICEI-FFPTSILAVRMNR----------------------------KRLV 101 (391)
T ss_pred EEEecCCCceEEEEEcccC---------ceEEEE-ecCCceEEEEEcc----------------------------ceEE
Confidence 444433 34788887542 122222 1234566666653 4666
Q ss_pred EEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE--eccce
Q 000454 486 TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA--IMDCR 563 (1491)
Q Consensus 486 SgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG--s~DG~ 563 (1491)
++=.+. |.|||+++.+.... +....++..++.++.++..+.+||.- ...|.
T Consensus 102 V~Lee~-IyIydI~~MklLhT--------------------------I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 102 VCLEES-IYIYDIKDMKLLHT--------------------------IETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEccc-EEEEecccceeehh--------------------------hhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 665544 99999997543211 11222355567777777777788863 35689
Q ss_pred EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeeCCc--ceEEEEEcCCCCEE
Q 000454 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK-TIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASI 640 (1491)
Q Consensus 564 IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt-IrIWDl~tGk~l~~l~~h~~--~VtslafSPDG~~L 640 (1491)
|.|||+.+-+.+..+..|.+.+.+|+|++ ++.+||||+..|+ |||+.+.+|+.+..|..+.. .|.+++|+||+++|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 99999999999999999999999999999 8899999999996 58999999999999986544 57799999999999
Q ss_pred EEEeCCCcEEEEECCCCc
Q 000454 641 ILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 641 Asgs~DG~I~IWdl~tG~ 658 (1491)
++.+..++|+||.+..-.
T Consensus 234 ~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEecCCCeEEEEEecccc
Confidence 999999999999997654
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7e-11 Score=145.69 Aligned_cols=234 Identities=12% Similarity=0.021 Sum_probs=154.2
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~---DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.+||...... ..+..+...+.+.+|+|||+.||..+. +..|.+|++.+++.... ....+.+..++|+||++
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCC-
Confidence 4799999875443 444556778999999999999987643 35799999988764332 22334455789999997
Q ss_pred eEEEEE-EeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC-ceEE
Q 000454 342 VYQLLS-SSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLAR 417 (1491)
Q Consensus 342 ~~~LaS-gS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D-G~Ir 417 (1491)
.|+. .+.+| .|.+||+.++...... .....+...+|+|||+.|+..+.+ +...
T Consensus 256 --~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 256 --KLAFALSKTGSLNLYVMDLASGQIRQVT---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --EEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------CCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 5554 34455 4888999876542211 122346778999999988776653 4445
Q ss_pred EE--eCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC-C--Ce
Q 000454 418 VW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-D--GS 492 (1491)
Q Consensus 418 VW--Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-D--Gt 492 (1491)
|| ++.++ ....+..+...+....|+|++ ..|+..+. + ..
T Consensus 313 Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG--------------------------~~Ia~~~~~~g~~~ 356 (429)
T PRK03629 313 VYKVNINGG----------APQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQH 356 (429)
T ss_pred EEEEECCCC----------CeEEeecCCCCccCEEECCCC--------------------------CEEEEEEccCCCce
Confidence 55 55432 122333334455678899986 45555443 3 35
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce---EEEEEC
Q 000454 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR---ICVWNA 569 (1491)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~---IrIWDl 569 (1491)
|.+||+.++.. ..+.. ........|+|||++|+.++.++. ++++++
T Consensus 357 I~~~dl~~g~~------------------------------~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 357 IAKQDLATGGV------------------------------QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEEECCCCCe------------------------------EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 77788775331 01110 111235679999999999887764 777787
Q ss_pred CCCceEEEEeCCCCCeEEEEEec
Q 000454 570 ADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 570 ~tgkll~tL~gHs~~VtsLafSP 592 (1491)
+|.....+.+|.+.+...+|+|
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCC
Confidence 5777788888888899999988
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=1.7e-11 Score=144.26 Aligned_cols=198 Identities=11% Similarity=0.121 Sum_probs=142.6
Q ss_pred CCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee--cCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL--SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l--~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
.+.|--+++|-.-|.|.++|..... ...+... ......|+++.|-|..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~-------~sklfne~r~i~ktsvT~ikWvpg~----------------------- 231 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFE-------VSKLFNEERLINKSSVTCIKWVPGS----------------------- 231 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhH-------HHHhhhhcccccccceEEEEEEeCC-----------------------
Confidence 4567778888889999998875311 1111111 1123689999999865
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC---CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP---MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 555 (1491)
...|+.+-.+|.+.++|....... ....|.. ++.+... .........++.+.......|+.++|+|||++|
T Consensus 232 --~~~Fl~a~~sGnlyly~~~~~~~~-t~p~~~~---~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 232 --DSLFLVAHASGNLYLYDKEIVCGA-TAPSYQA---LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred --CceEEEEEecCceEEeeccccccC-CCCcccc---cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceE
Confidence 457888889999999976421100 0000000 0000000 000001113444444556689999999999999
Q ss_pred EEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 556 aSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
|+.+.||.++|||..+.+++..++..-+...|++|+| |+++|++||.|-.|.||.+..++.+..-++|...|..|+|.|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999888888888999999999 889999999999999999999999999999999999999985
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.3e-10 Score=141.13 Aligned_cols=233 Identities=15% Similarity=0.079 Sum_probs=151.2
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS---~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.+||...... ..+..+...+.+.+|+||++ .|+..+ .+..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~l~~--------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQVAS--------------- 240 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEEccC---------------
Confidence 699999865444 44455677899999999997 565443 24568999998775322111
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEe-cCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTG-SSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasG-s~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
....+..++|+|||+.|+.. +.+| .|++||+.++ .+..+..+...+....|+|++
T Consensus 241 ------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg----------~~~~lt~~~~~~~~~~wSPDG------ 298 (429)
T PRK03629 241 ------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----------QIRQVTDGRSNNTEPTWFPDS------ 298 (429)
T ss_pred ------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC----------CEEEccCCCCCcCceEECCCC------
Confidence 11223457999999988765 4344 5888998653 223344445567889999986
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeC-CCeEEEE--ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIW--IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~-DGtIrIW--Dl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
+.|+..+. +|...|| |+.++. ...+..
T Consensus 299 --------------------~~I~f~s~~~g~~~Iy~~d~~~g~------------------------------~~~lt~ 328 (429)
T PRK03629 299 --------------------QNLAYTSDQAGRPQVYKVNINGGA------------------------------PQRITW 328 (429)
T ss_pred --------------------CEEEEEeCCCCCceEEEEECCCCC------------------------------eEEeec
Confidence 45555544 4555555 443311 111222
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc---EEEEeC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK---TIVWDI 612 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt---IrIWDl 612 (1491)
........+|+|||++|+..+.+ ..|++||+.++... .+... .......|+| ++++|+.++.++. +.+|++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 22334568899999999886543 35899999888654 34322 2234678999 5555656665653 677788
Q ss_pred CCCceEEEEeeCCcceEEEEEcC
Q 000454 613 WEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|.....+..+.+.+...+|+|
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCC
Confidence 6777777777778888999997
No 220
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1e-10 Score=138.16 Aligned_cols=353 Identities=14% Similarity=0.206 Sum_probs=217.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC-----------CCcEE
Q 000454 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-----------DGTCR 355 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-----------DGtVr 355 (1491)
.-+-+.|||-|+||+|--..| |.+|--.+...++.+. |.+ |.-+.|||..+ +|++-+. ...|+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~Ek---YLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEK---YLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccc---eEEEecCCccccCcccCCCceEE
Confidence 456789999999999987776 8999877766676665 544 88999999987 8888653 25699
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
|||+.+|.....+.... .....-.-+.||.|++++|.-.. ..|.||+..+ ...
T Consensus 286 IWDI~tG~lkrsF~~~~-----------------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps---------f~l 338 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIK-----------------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS---------FML 338 (698)
T ss_pred EEEccccchhcceeccC-----------------CCccccceEEeccCCceeEEecc-ceEEEEecCc---------eee
Confidence 99999999877764321 11112335789999999998776 5688998743 112
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccc
Q 000454 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1491)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1491)
+..-.-....|....|+|.+ ..|..|-..+....
T Consensus 339 ld~Kslki~gIr~FswsP~~-----------------------------------~llAYwtpe~~~~p----------- 372 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTS-----------------------------------NLLAYWTPETNNIP----------- 372 (698)
T ss_pred ecccccCCccccCcccCCCc-----------------------------------ceEEEEcccccCCc-----------
Confidence 22222234567778888864 12233433321100
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe----------ccceEEEEECCCCceEEEEeCCCCCe
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----------MDCRICVWNAADGSLVHSLTGHTEST 585 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----------~DG~IrIWDl~tgkll~tL~gHs~~V 585 (1491)
........+....+....-+.-.=..+-|-.+|.+|++-. .-..+.|+.++..........-...|
T Consensus 373 ----arvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 373 ----ARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred ----ceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 0000011111122222112222223466778888887632 11235566655443322222345678
Q ss_pred EEEEEecCCCcEEEEEeCC--CcEEEEeCCC-C---ceEEEEeeCCcceEEEEEcCCCCEEEEE---eCCCcEEEEECCC
Q 000454 586 YVLDVHPFNPRIAMSAGYD--GKTIVWDIWE-G---IPIRIYEISRFRLVDGKFSPDGASIILS---DDVGQLYILNTGQ 656 (1491)
Q Consensus 586 tsLafSPdd~~lLaSgS~D--GtIrIWDl~t-G---k~l~~l~~h~~~VtslafSPDG~~LAsg---s~DG~I~IWdl~t 656 (1491)
...+|-|.+.++.+..+.+ .++.+|-+.+ + .++..+. ....+.+.|||.|++++++ +..|.+.++|+.-
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 8999999888877666654 5788888873 2 3444443 2456789999999999876 4567788887632
Q ss_pred CcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCe
Q 000454 657 GESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLK 736 (1491)
Q Consensus 657 G~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~ 736 (1491)
. ++. .+.. |+ ...+..+.|.|.|+|
T Consensus 527 a--------------~~k-------------~~~~-------------------~e---------h~~at~veWDPtGRY 551 (698)
T KOG2314|consen 527 A--------------DLK-------------DTAS-------------------PE---------HFAATEVEWDPTGRY 551 (698)
T ss_pred h--------------hhh-------------hccC-------------------cc---------ccccccceECCCCCE
Confidence 0 000 0111 11 112335899999999
Q ss_pred EEEee---CCCCCCcEEeccCCCccccccCCcccccccccccCCcCC
Q 000454 737 LAVGP---DFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQ 780 (1491)
Q Consensus 737 LAvg~---d~s~d~~v~lw~~~~~~~lieplp~~i~~~~W~P~~ev~ 780 (1491)
++++. .+.+|..++||+.......-.-+..+.. +.|.|.++.+
T Consensus 552 vvT~ss~wrhk~d~GYri~tfqGrll~~~~i~~f~q-F~WRPRPps~ 597 (698)
T KOG2314|consen 552 VVTSSSSWRHKVDNGYRIFTFQGRLLKEDIIDRFKQ-FLWRPRPPSL 597 (698)
T ss_pred EEEeeehhhhccccceEEEEeecHHHHHHHHHHHHh-hccCCCCCcc
Confidence 99985 5678889999999644322222334443 7899999964
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.37 E-value=1.7e-11 Score=137.19 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=170.1
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
...|+|.+|++|+..+|++.....|.||..... +......++..|...|++|.|+|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~------~~w~~~htls~Hd~~vtgvdWap~s---------------- 67 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA------DLWEPAHTLSEHDKIVTGVDWAPKS---------------- 67 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC------CCceeceehhhhCcceeEEeecCCC----------------
Confidence 457999999999999999999999999998653 3467889999999999999999975
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
+.|++|+.|...++|....+ ..| .+...+..++...++|.|+|.
T Consensus 68 ----------nrIvtcs~drnayVw~~~~~------~~W--------------------kptlvLlRiNrAAt~V~WsP~ 111 (361)
T KOG1523|consen 68 ----------NRIVTCSHDRNAYVWTQPSG------GTW--------------------KPTLVLLRINRAATCVKWSPK 111 (361)
T ss_pred ----------CceeEccCCCCccccccCCC------Cee--------------------ccceeEEEeccceeeEeecCc
Confidence 69999999999999976421 223 234456667889999999999
Q ss_pred CCEEEEEeccceEEEEECCCCceE----EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-----C--------
Q 000454 552 NRFVLAAIMDCRICVWNAADGSLV----HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW-----E-------- 614 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~tgkll----~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~-----t-------- 614 (1491)
+..||+|+....|.||-++...-- +.-+.+...|+++.||| ++-+|++|+.|+..+|+..- +
T Consensus 112 enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWg 190 (361)
T KOG1523|consen 112 ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWG 190 (361)
T ss_pred CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCc
Confidence 999999999999999987653322 22345677899999999 88899999999999999641 1
Q ss_pred -----CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 615 -----GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 615 -----Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
|+++..+....+.|..+.|+|+|..|+-.+.|+.|.+-|.....
T Consensus 191 sk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 191 SKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 34455554456789999999999999999999999999976654
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.2e-10 Score=143.97 Aligned_cols=235 Identities=15% Similarity=0.050 Sum_probs=150.6
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.+||.. +.....+..+...+.+.+|+|+++ .|+.++. ...|.+||+.+++.....
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~~l~--------------- 244 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRELVA--------------- 244 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEEEec---------------
Confidence 469999985 444555666778899999999998 6666653 346999999877532211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-ecCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.......+++|+|||+.|+. .+.+| .|++|++.++ .+..+..+......+.|+|++
T Consensus 245 ------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~spDG----- 303 (433)
T PRK04922 245 ------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----------QLTRLTNHFGIDTEPTWAPDG----- 303 (433)
T ss_pred ------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----------CeEECccCCCCccceEECCCC-----
Confidence 01223457899999987764 44444 5999998653 233444555556678999986
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEe-CCCe--EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DGt--IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|+.++ .+|. |.++++.+++ ...+.
T Consensus 304 ---------------------~~l~f~sd~~g~~~iy~~dl~~g~------------------------------~~~lt 332 (433)
T PRK04922 304 ---------------------KSIYFTSDRGGRPQIYRVAASGGS------------------------------AERLT 332 (433)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEEee
Confidence 4555544 4555 4445544321 11111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeccc---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeC
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDI 612 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D--GtIrIWDl 612 (1491)
........++|+|||++|+..+.++ .|++||+.+++.. .+. +........|+|++..++++.... +.|.+|++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1122344689999999998865443 6999999888765 333 222345679999555555554433 45788888
Q ss_pred CCCceEEEEeeCCcceEEEEEcC
Q 000454 613 WEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|.....+..+.+.+...+|+|
T Consensus 411 -~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 -DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCCceEEcccCCCCCCCCccCC
Confidence 4555666665566777888887
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=4.3e-10 Score=127.56 Aligned_cols=177 Identities=17% Similarity=0.252 Sum_probs=130.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC----
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDG---- 317 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g-H~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~tg---- 317 (1491)
..+..++|++.-..+|++..|-.|+||+-.. ++...++. -...|+|++|-|.+ +-|+.|+.. -|.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3567788988766778889999999999876 55555552 45689999999954 567777765 5999976421
Q ss_pred Cc--------ee--eeccCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 318 LP--------IS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 318 k~--------i~--~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
.. .. ...+| ..|++|+|.+|+. .|++++. |..|.|||..++..+....
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt---~l~tAS~gsssi~iWdpdtg~~~pL~~----------------- 235 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT---ILVTASFGSSSIMIWDPDTGQKIPLIP----------------- 235 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC---EEeecccCcceEEEEcCCCCCcccccc-----------------
Confidence 11 11 22344 6899999999997 7777764 5789999999998765542
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCc
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1491)
...+.+.-+.|||||.+|++++-|+..++|.... ......... -.+.|..-+|+|+|
T Consensus 236 ---~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q--------~wt~erw~l-gsgrvqtacWspcG 292 (445)
T KOG2139|consen 236 ---KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ--------SWTKERWIL-GSGRVQTACWSPCG 292 (445)
T ss_pred ---cCCCceeeEEEcCCCCEEEEecccceeeeehhcc--------cceecceec-cCCceeeeeecCCC
Confidence 1455688999999999999999999999996532 122222222 34489999999998
No 224
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=6.3e-10 Score=131.04 Aligned_cols=342 Identities=13% Similarity=0.128 Sum_probs=214.5
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC--- 307 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DG--- 307 (1491)
+....-.++..-.-++..++|||.|++|++....| |.+|....+..+..+. ...|..+.|+|.++||.+-+..+
T Consensus 20 ~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 20 QSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred ccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccC
Confidence 33333444444667899999999999999887655 8999988777666665 35699999999999999976543
Q ss_pred ------------eEEEEECCCCCceeeeccCCCc--eE-EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC
Q 000454 308 ------------IIRVWRLPDGLPISVLRGHTAA--VT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1491)
Q Consensus 308 ------------tIrVWDl~tgk~i~~L~gHs~~--Vt-sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~ 372 (1491)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+.. +++-. ....+.|+++ ++.....-
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~---y~ARv-v~~sl~i~e~-t~n~~~~p---- 167 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK---YVARV-VGSSLYIHEI-TDNIEEHP---- 167 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch---hhhhh-ccCeEEEEec-CCccccCc----
Confidence 4999999999999988876655 55 678888876 33333 3345899997 44322110
Q ss_pred CCCcccCCCCCCCCCCCCCCcceEEEEECCCC--CEEEE-----ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC
Q 000454 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND 445 (1491)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG--~~Las-----Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~ 445 (1491)
........|...+|+|.| ..||. ++..+.++||.+... ..+....-....
T Consensus 168 --------------~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lfk~~ 224 (561)
T COG5354 168 --------------FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLFKVS 224 (561)
T ss_pred --------------hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeEeec
Confidence 001123568888888864 33443 456788888888532 122211111122
Q ss_pred ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000454 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1491)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~ 525 (1491)
-..+.|.+.|......+.... +...+++ ....+.|+++....
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~------ksnKsyf---------gesnLyl~~~~e~~----------------------- 266 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHT------KSNKSYF---------GESNLYLLRITERS----------------------- 266 (561)
T ss_pred ccEEEEecCCceEEEEEEEee------eccccee---------ccceEEEEeecccc-----------------------
Confidence 234556555411100000000 0000000 12344555544211
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE--eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG--s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~ 603 (1491)
+.......++|..++|.|.++.+++. -++..+.++|+... +...+ ....-+.+.|+| ..++++.++.
T Consensus 267 -------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~il~agF 335 (561)
T COG5354 267 -------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYILFAGF 335 (561)
T ss_pred -------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEEEEecC
Confidence 11112446789999999999887764 47888999999755 44443 334446688999 6677777775
Q ss_pred C---CcEEEEeCCCCceEE-EEeeCCcceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCc
Q 000454 604 D---GKTIVWDIWEGIPIR-IYEISRFRLVDGKFSPDGASIILSD------DVGQLYILNTGQGE 658 (1491)
Q Consensus 604 D---GtIrIWDl~tGk~l~-~l~~h~~~VtslafSPDG~~LAsgs------~DG~I~IWdl~tG~ 658 (1491)
| |.|-|||......+. .+.+. ...-+.|||||+++.+.. .|..|.||++....
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 5 689999997654444 55533 345578999999988753 37889999986543
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.9e-10 Score=140.60 Aligned_cols=234 Identities=14% Similarity=0.062 Sum_probs=154.2
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~---DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.+||.. |.....+..|...|.+.+|+|||+.|+..+. +..|.+||+.++... .+..+.+.+.+.+|+|+++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence 479999985 5555667778889999999999999988764 468999999888653 4455667788999999997
Q ss_pred eEEEEEEeCCCc--EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--eE
Q 000454 342 VYQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1491)
Q Consensus 342 ~~~LaSgS~DGt--VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG--~I 416 (1491)
.++++.+.+|. |.+||+.++.... + ..+.......+|+|||+.|+..+. +| .|
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~~-L--------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTTR-L--------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceEE-c--------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 23445666665 6777887765322 1 112233556899999998887664 33 57
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCC---CeE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSA 493 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D---GtI 493 (1491)
++|++..+ ....+..+...+....|+|++ +.|+..+.+ ..|
T Consensus 317 y~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG--------------------------~~ia~~~~~~~~~~i 360 (435)
T PRK05137 317 YVMNADGS----------NPRRISFGGGRYSTPVWSPRG--------------------------DLIAFTKQGGGQFSI 360 (435)
T ss_pred EEEECCCC----------CeEEeecCCCcccCeEECCCC--------------------------CEEEEEEcCCCceEE
Confidence 77787532 122333344556678899986 455554433 357
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc------ceEEEE
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD------CRICVW 567 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D------G~IrIW 567 (1491)
.+||+.... ... ......+..+.|+|||++|+..+.+ ..|+++
T Consensus 361 ~~~d~~~~~------------------------------~~~-lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 361 GVMKPDGSG------------------------------ERI-LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred EEEECCCCc------------------------------eEe-ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 777765321 000 1111235568899999998876543 368888
Q ss_pred ECCCCceEEEEeCCCCCeEEEEEec
Q 000454 568 NAADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 568 Dl~tgkll~tL~gHs~~VtsLafSP 592 (1491)
|+..+.. ..+. ..+.+...+|+|
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCC
Confidence 9866554 4444 244567778877
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.6e-10 Score=142.88 Aligned_cols=235 Identities=14% Similarity=0.050 Sum_probs=153.9
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.|||.. +.....+..+...+.+.+|+|||+.|+.++.. ..|.+|++.+++... +..+.+...+++|+|+++
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC-
Confidence 479999986 44555666678889999999999999988743 469999998876543 333455566889999997
Q ss_pred eEEEEEEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cce--E
Q 000454 342 VYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 416 (1491)
Q Consensus 342 ~~~LaSgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~--I 416 (1491)
.++++.+.+| .|.+||+.++...... .+.......+|+|||+.|+.++. +|. |
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~~lt---------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLTRLT---------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2334555555 5899999877632211 12223456799999998887664 444 5
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC---eE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SA 493 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tI 493 (1491)
+++++.++. ...+..+......++|+|++ +.|+..+.++ .|
T Consensus 319 y~~dl~~g~----------~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 319 YRVAASGGS----------AERLTFQGNYNARASVSPDG--------------------------KKIAMVHGSGGQYRI 362 (433)
T ss_pred EEEECCCCC----------eEEeecCCCCccCEEECCCC--------------------------CEEEEEECCCCceeE
Confidence 666664321 12222233345568999986 4555544332 58
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECC
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~ 570 (1491)
.+||+.+++.. .+. +........|+|||++|+..+.+ +.|+++++.
T Consensus 363 ~v~d~~~g~~~------------------------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 363 AVMDLSTGSVR------------------------------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EEEECCCCCeE------------------------------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 89988753310 011 11123346899999998877653 468888884
Q ss_pred CCceEEEEeCCCCCeEEEEEec
Q 000454 571 DGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 571 tgkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 556666766667778888887
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.4e-10 Score=140.86 Aligned_cols=236 Identities=15% Similarity=0.107 Sum_probs=153.0
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.+||.. |.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 468888874 55555666778899999999999999887653 459999999887543 333445677899999997
Q ss_pred eEEEE-EEeCCCcEEEEccC--CCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-CceEE
Q 000454 342 VYQLL-SSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLAR 417 (1491)
Q Consensus 342 ~~~La-SgS~DGtVrIWDl~--tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~Ir 417 (1491)
.|+ +.+.+|...||.+. ++. ...+ ..+........|+|||+.|+..+. +|...
T Consensus 253 --~la~~~~~~g~~~Iy~~d~~~~~-~~~l--------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 253 --TLAVALSRDGNSQIYTVNADGSG-LRRL--------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred --EEEEEEccCCCceEEEEECCCCC-cEEC--------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 454 66778887777553 332 1111 112223456789999998876554 46666
Q ss_pred EEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC---eEE
Q 000454 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAI 494 (1491)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tIr 494 (1491)
||.+.... . ....+..+........|+|++ +.|+..+.++ .|.
T Consensus 310 Iy~~~~~~-------g-~~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 310 IYRMPASG-------G-AAQRVTFTGSYNTSPRISPDG--------------------------KLLAYISRVGGAFKLY 355 (427)
T ss_pred EEEEECCC-------C-ceEEEecCCCCcCceEECCCC--------------------------CEEEEEEccCCcEEEE
Confidence 66653210 1 111122222334467888886 5666655543 688
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc---eEEEEECCC
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAAD 571 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWDl~t 571 (1491)
+||+.+++. ..+.. ......+.|+|||++|+.++.++ .+++.++ +
T Consensus 356 v~d~~~g~~------------------------------~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 356 VQDLATGQV------------------------------TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred EEECCCCCe------------------------------EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 999876331 01111 11234578999999998877544 4666676 5
Q ss_pred CceEEEEeCCCCCeEEEEEec
Q 000454 572 GSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 572 gkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCceEEeecCCCCCCCCccCC
Confidence 777777777778888889988
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=3.2e-10 Score=139.80 Aligned_cols=240 Identities=14% Similarity=0.078 Sum_probs=151.6
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.+||. +|.....+..+...+.+.+|+|+++ .|+.++.+ ..|.+||+.+++.....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------- 236 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRRVVA--------------- 236 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEEEee---------------
Confidence 46777786 4555556666788899999999997 66665532 35999999887643221
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1491)
.....+.+.+|+|||+.|+. .+.+|...||.+... ......+..+...+....|+|++
T Consensus 237 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------~~~~~~lt~~~~~~~~~~wSpDG------- 295 (427)
T PRK02889 237 ------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------GSGLRRLTQSSGIDTEPFFSPDG------- 295 (427)
T ss_pred ------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------CCCcEECCCCCCCCcCeEEcCCC-------
Confidence 01233567899999998864 567777666665321 11233445555556778899987
Q ss_pred ccCCCCCCCccccccccCCCeEEEEe-CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1491)
..|+..+ .+|...||.+.... .....+.....
T Consensus 296 -------------------~~l~f~s~~~g~~~Iy~~~~~~----------------------------g~~~~lt~~g~ 328 (427)
T PRK02889 296 -------------------RSIYFTSDRGGAPQIYRMPASG----------------------------GAAQRVTFTGS 328 (427)
T ss_pred -------------------CEEEEEecCCCCcEEEEEECCC----------------------------CceEEEecCCC
Confidence 4454444 45677777654211 00111111112
Q ss_pred CeeEEEEcCCCCEEEEEeccc---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCc
Q 000454 542 GVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIWEGI 616 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG---~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt--IrIWDl~tGk 616 (1491)
.....+|||||++|+..+.++ .|++||+.+++......+ .....+.|+|++..++++....|. +.+.++ +|.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~ 405 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGR 405 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCC
Confidence 234578999999999877554 699999988875543322 234678999965555555544443 555566 576
Q ss_pred eEEEEeeCCcceEEEEEcCC
Q 000454 617 PIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 617 ~l~~l~~h~~~VtslafSPD 636 (1491)
....+..+.+.+...+|+|-
T Consensus 406 ~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceEEeecCCCCCCCCccCCC
Confidence 66667656667777888874
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.4e-10 Score=133.03 Aligned_cols=264 Identities=13% Similarity=0.170 Sum_probs=182.4
Q ss_pred CCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCCceee------eccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 285 EGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPISV------LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 285 ~~~VtsLafSPDG~--lLASGS~DGtIrVWDl~tgk~i~~------L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
...|..++|.-+++ .|...+.+..+....+....+... ....++.|..++.... .|++|-.+|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-----~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-----TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-----EEEEEecCCcEEE
Confidence 45677777776554 455554666677777665544433 3345667777776543 7999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCC--ceEEEEeCCCCCCCCCCCCC
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSD--TLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~D--G~IrVWDl~t~~~~~s~~~~ 433 (1491)
|....+........ .-.....+..+.-++.. .++|+|+.. ..+.|||+....
T Consensus 130 ~~~k~~d~hss~l~-----------------~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-------- 184 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLI-----------------KLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-------- 184 (412)
T ss_pred EeccCCccccccce-----------------eeecCCceeeeccCCCCCceEecCchhcccceeeeecccce--------
Confidence 99875542211000 00112344555555543 456669888 889999996531
Q ss_pred ceeeeecCC-----------CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 434 HEIDVLSGH-----------ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 434 ~~i~~l~gH-----------~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
..+.+. .-+++.+.|.+.. .+..|++++.-+.+++||++.++
T Consensus 185 ---qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~------------------------~~~~fat~T~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 185 ---QIWSAKNVPNDRLGLRVPVWITDIRFLEGS------------------------PNYKFATITRYHQVRLYDTRHQR 237 (412)
T ss_pred ---eeeeccCCCCccccceeeeeeccceecCCC------------------------CCceEEEEecceeEEEecCcccC
Confidence 111111 1234455555431 14689999999999999999654
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE-EeCC
Q 000454 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGH 581 (1491)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t-L~gH 581 (1491)
.|+..+.-...+|+++...|+|++|++|..-+.+..||++.++++.. +.+-
T Consensus 238 ----------------------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 238 ----------------------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ----------------------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 34444445567899999999999999999999999999999998876 8999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 582 s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
.+.|.+|..|| ...+|++||-|..|+|+|+.+.+++.... -...+++|.+.+
T Consensus 290 tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 290 TGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 99999999999 77899999999999999999877665433 123455555543
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=4e-09 Score=118.63 Aligned_cols=239 Identities=13% Similarity=0.194 Sum_probs=155.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC------CeEEEEECCCCC
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-ND------CIIRVWRLPDGL 318 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS-~D------GtIrVWDl~tgk 318 (1491)
...++|..|..-++.|.++| .+||+++-.+.......+.+.+.-+..---.++||-.+ .. ..|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999999999988777 89999876444333332333322221111234555433 22 469999966667
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC-CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t-g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~s 397 (1491)
++..+. ...+|.+|.+.++ .|++.- .+.|.||...+ .+.+..+.
T Consensus 87 ~i~el~-f~~~I~~V~l~r~-----riVvvl-~~~I~VytF~~n~k~l~~~e---------------------------- 131 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD-----RIVVVL-ENKIYVYTFPDNPKLLHVIE---------------------------- 131 (346)
T ss_pred EEEEEE-eccceeeEEEcCC-----eEEEEe-cCeEEEEEcCCChhheeeee----------------------------
Confidence 777776 6789999999997 455554 46799998763 22222221
Q ss_pred EEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccc
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~ 477 (1491)
..-+|.| |.+ ... ...-..++| |
T Consensus 132 t~~NPkG--lC~---------~~~---------------------~~~k~~Laf-P------------------------ 154 (346)
T KOG2111|consen 132 TRSNPKG--LCS---------LCP---------------------TSNKSLLAF-P------------------------ 154 (346)
T ss_pred cccCCCc--eEe---------ecC---------------------CCCceEEEc-C------------------------
Confidence 1112333 110 000 000001111 1
Q ss_pred ccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
|-.-|.|+|-|+...+ ..+...+..|...|.|++++.+|..||+
T Consensus 155 ---------g~k~GqvQi~dL~~~~---------------------------~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 155 ---------GFKTGQVQIVDLASTK---------------------------PNAPSIINAHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred ---------CCccceEEEEEhhhcC---------------------------cCCceEEEcccCceeEEEEcCCccEEEE
Confidence 1123666776666422 0123456778999999999999999999
Q ss_pred Eeccce-EEEEECCCCceEEEEeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 558 AIMDCR-ICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 558 Gs~DG~-IrIWDl~tgkll~tL~g--Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
++..|+ |+|||..+|+++..++- ....|++|+|+| +..+|+.+|..|+|.|+.+..
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 999997 89999999999999863 234799999999 788999999999999998865
No 231
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=7.2e-10 Score=134.81 Aligned_cols=454 Identities=15% Similarity=0.175 Sum_probs=266.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC------------CEEEEEECCCeEE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN------------ALVASASNDCIIR 310 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG------------~lLASGS~DGtIr 310 (1491)
...-.++.|+|.| +||-|+. ..|.|-|..+.+.+.++.-|...|+.|.|.|-. -+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3345678899887 5777664 679999999999999999999999999998721 2678888889999
Q ss_pred EEECCCCCceeeeccCCCceEEEEecCCCCce-EEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 311 VWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~-~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|||+..+..+..+..|..+|..++|-+..... ..|++-....+|.+|+..+|+......
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-------------------- 152 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-------------------- 152 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--------------------
Confidence 99999999998999999999999998754322 467777888899999999998665542
Q ss_pred CCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC-------ceEEEEccCccccccc
Q 000454 390 PQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND-------VNYVQFSGCAVASRFS 461 (1491)
Q Consensus 390 ~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~-------V~sVafSpdg~as~~s 461 (1491)
.......|+.+.| |.+.|..-+..|.|.+.+.-... ....+++.+.....|... ++....+... ++..-
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s--ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~-~sa~f 229 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS--EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP-ASAYF 229 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC--CCCCCceeEEEecCccchhhhhhhhhccccccCCC-cchhH
Confidence 1334566788888 67778887888888777763211 222344444444444331 0000000000 00000
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1491)
+ .......+...| ..++-...-..+.++|+.-.. ++..+.-..+
T Consensus 230 i----ty~a~faf~p~~---rn~lfi~~prellv~dle~~~-----------------------------~l~vvpier~ 273 (1062)
T KOG1912|consen 230 I----TYCAQFAFSPHW---RNILFITFPRELLVFDLEYEC-----------------------------CLAVVPIERG 273 (1062)
T ss_pred H----HHHHhhhcChhh---hceEEEEeccceEEEcchhhc-----------------------------eeEEEEeccC
Confidence 0 000000011111 223333445667788776422 1111222233
Q ss_pred CeeEEEEcCCCC--EEEEEeccceEEEEECCC----------------CceEEEEeCCC-CCeEEEEEecCCCcEEEEEe
Q 000454 542 GVNMIVWSLDNR--FVLAAIMDCRICVWNAAD----------------GSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 542 ~VtsVafSPDG~--~LaSGs~DG~IrIWDl~t----------------gkll~tL~gHs-~~VtsLafSPdd~~lLaSgS 602 (1491)
.+.-+.|-|+++ .|++...||.+.||-.+. +..++.+..-. -.+...+..|..+..++.--
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~ 353 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLY 353 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhh
Confidence 344456666654 688999999999997654 22233222111 12233344564455444445
Q ss_pred CCCcEEEEeCCCCceEEEEe-------------------------------eCCcceEEEEEc-----------CCC---
Q 000454 603 YDGKTIVWDIWEGIPIRIYE-------------------------------ISRFRLVDGKFS-----------PDG--- 637 (1491)
Q Consensus 603 ~DGtIrIWDl~tGk~l~~l~-------------------------------~h~~~VtslafS-----------PDG--- 637 (1491)
.+|.+.+|.+.+|+.-.... .|..+.++.... |.|
T Consensus 354 s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~ 433 (1062)
T KOG1912|consen 354 SSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTP 433 (1062)
T ss_pred hcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCcc
Confidence 67888999887654321110 122223322221 222
Q ss_pred ----CEEEEEeCCCcEEEEECCCCccccc------ccceeeecCCCcceEEcc------CCCEEEccccccCccccCCCc
Q 000454 638 ----ASIILSDDVGQLYILNTGQGESQKD------AKYDQFFLGDYRPLVQDT------YGNVLDQETQLAPHRRNLQDP 701 (1491)
Q Consensus 638 ----~~LAsgs~DG~I~IWdl~tG~~~~~------~~~~~~fs~D~r~La~d~------~G~vLde~tq~~p~Lw~l~~~ 701 (1491)
.++|+|+..|+|.++|+.++..... ....+.|.+.++.+-+.. .|.|.. +.+ +-++++|
T Consensus 434 ~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN-~l~----vtdLrtG 508 (1062)
T KOG1912|consen 434 AGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRN-DLV----VTDLRTG 508 (1062)
T ss_pred ceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceee-eEE----EEEcccc
Confidence 2577899999999999999875432 234446666655543321 222211 111 1223333
Q ss_pred cccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcccc---ccCCcccccccccc
Q 000454 702 LCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM---IDPLPEFIDVMDWE 774 (1491)
Q Consensus 702 l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~l---ieplp~~i~~~~W~ 774 (1491)
+- .++.++....+..+..|..|..|+|||+. -.+.-+.+|++.+...+ -..+|-++ .++|.
T Consensus 509 ls--------k~fR~l~~~despI~~irvS~~~~yLai~---Fr~~plEiwd~kt~~~lr~mS~a~P~it-~leWs 572 (1062)
T KOG1912|consen 509 LS--------KRFRGLQKPDESPIRAIRVSSSGRYLAIL---FRREPLEIWDLKTLRMLRLMSLALPLIT-VLEWS 572 (1062)
T ss_pred cc--------cccccCCCCCcCcceeeeecccCceEEEE---ecccchHHHhhccchHHHHHhhcCCcEE-EEeec
Confidence 21 11222222234556778999999999998 55667899998554322 23455444 69998
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=4.1e-10 Score=127.77 Aligned_cols=209 Identities=13% Similarity=0.219 Sum_probs=140.8
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee-cCCCCCceEEEEccCccccccccccCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l-~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1491)
...+..++|++.-..||++..|-.|++|+-.. .....+ ......|++++|-|.+
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss----------t~pt~Lks~sQrnvtclawRPls--------------- 152 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----------TCPTKLKSVSQRNVTCLAWRPLS--------------- 152 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC----------CCCceecchhhcceeEEEeccCC---------------
Confidence 34577899999877889999999999999753 111222 2335689999999976
Q ss_pred CccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC
Q 000454 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1491)
Q Consensus 471 ~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP 550 (1491)
...|+.|+.. -|.||.....-........ -......+.+-.+| ..|+++.|.+
T Consensus 153 ----------aselavgCr~-gIciW~~s~tln~~r~~~~---------------~s~~~~qvl~~pgh-~pVtsmqwn~ 205 (445)
T KOG2139|consen 153 ----------ASELAVGCRA-GICIWSDSRTLNANRNIRM---------------MSTHHLQVLQDPGH-NPVTSMQWNE 205 (445)
T ss_pred ----------cceeeeeecc-eeEEEEcCccccccccccc---------------ccccchhheeCCCC-ceeeEEEEcC
Confidence 3456666654 5889966531100000000 00000111222233 6799999999
Q ss_pred CCCEEEEEe-ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceE
Q 000454 551 DNRFVLAAI-MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629 (1491)
Q Consensus 551 DG~~LaSGs-~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vt 629 (1491)
||..+++++ .+..|.|||..++..+....---+.++-+.||| ++.+|+++.-|+..++|+.....-........+.|.
T Consensus 206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvq 284 (445)
T KOG2139|consen 206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQ 284 (445)
T ss_pred CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCcee
Confidence 999999987 467899999999987766544556788999999 556666788999999996544332233333566999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 630 DGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 630 slafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
..+|+|+|++|..+.. |.-.+|.+
T Consensus 285 tacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred eeeecCCCCEEEEEEc-CCceEEEE
Confidence 9999999999886654 33344444
No 233
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=1.4e-10 Score=130.90 Aligned_cols=334 Identities=17% Similarity=0.192 Sum_probs=231.2
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM-ETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl-~Tg~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
+...++.++||.+.|+....-|-..-+++.+.|.+|+||-- ..++.-..+. ....+++++.+.+....|+.|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 45567889999999999999998888999999999999953 3444433332 245789999999999999999999999
Q ss_pred EEEECC----CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 310 RVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 310 rVWDl~----tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
.-+.+. ....++....|...|..+.|+-... .+++.+.|..+.---.+.+..+....+...
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e---~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~------------ 157 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE---WVLSTGKDKQFAWHCTESGNRLGGYNFETP------------ 157 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce---eEEEeccccceEEEeeccCCcccceEeecc------------
Confidence 988664 3455666778999999999998766 899999988665444444443333221110
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
..++.|.-. +...|...|.|.+..+.. .....+..+.+|.+.+.++.|.+.
T Consensus 158 ---------~t~~~~d~~--~~fvGd~~gqvt~lr~~~-------~~~~~i~~~~~h~~~~~~l~Wd~~----------- 208 (404)
T KOG1409|consen 158 ---------ASALQFDAL--YAFVGDHSGQITMLKLEQ-------NGCQLITTFNGHTGEVTCLKWDPG----------- 208 (404)
T ss_pred ---------CCCCceeeE--EEEecccccceEEEEEee-------cCCceEEEEcCcccceEEEEEcCC-----------
Confidence 001111111 445555666666555532 124578889999999999999986
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
+..|++|..|..+.+||+-..+ +....+.+|...|..
T Consensus 209 ---------------~~~LfSg~~d~~vi~wdigg~~----------------------------g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 209 ---------------QRLLFSGASDHSVIMWDIGGRK----------------------------GTAYELQGHNDKVQA 245 (404)
T ss_pred ---------------CcEEEeccccCceEEEeccCCc----------------------------ceeeeeccchhhhhh
Confidence 3689999999999999987533 234456778888888
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEE-----------------------------EEeCC-----CCCeEEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVH-----------------------------SLTGH-----TESTYVLDVH 591 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~-----------------------------tL~gH-----s~~VtsLafS 591 (1491)
+..-+--+.+++++.||.|.+|++....... -+..| ...|...+-+
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s 325 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS 325 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc
Confidence 8888888899999999999999986432110 00001 0111111111
Q ss_pred cCCCcEEEEEeCCCcE--------EEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 592 PFNPRIAMSAGYDGKT--------IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtI--------rIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
......+-+..-.+ .|+|. +..+++.+...+..|+.+.+-.+-.+|++++.|..|+|||+.
T Consensus 326 --~~~~~p~mg~e~~vR~~~~c~~~i~~~-~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 326 --NRSSYPTMGFEFSVRVCDSCYPTIKDE-ERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred --CccccccccceeEEEEecccchhhhcC-CCCccccccccccceeEEEhhhhccceeecCCceEEEEEech
Confidence 11111122222233 34444 335677777677789999999999999999999999999984
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=1e-10 Score=137.85 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=129.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC----------
Q 000454 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCR----GHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPD---------- 316 (1491)
Q Consensus 252 SpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~----gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~t---------- 316 (1491)
.+.|--|+.|-.-|.|.+.|....+..+.+. -....|+|+.|-|.+ ..++.+-.+|.+.++|..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3466678888888899988876522221111 134789999999954 4556667789999997521
Q ss_pred ----C--------------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCccc
Q 000454 317 ----G--------------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 317 ----g--------------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
+ .++..+.--.+.|..++|+||++ +||+.+.||.++|||..+.+++....
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---~LA~VSqDGfLRvF~fdt~eLlg~mk--------- 329 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK---YLATVSQDGFLRIFDFDTQELLGVMK--------- 329 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc---eEEEEecCceEEEeeccHHHHHHHHH---------
Confidence 1 12222323345789999999998 99999999999999998877655442
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.--+...|++|+|||++|++|+.|-.|.||.+.. .+.+..-.+|..+|..|+|.|-
T Consensus 330 -----------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e---------rRVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 330 -----------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE---------RRVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred -----------hhccceEEEEEcCCccEEEecCCcceEEEEEecc---------ceEEEeccccccceeeEeeccc
Confidence 1345689999999999999999999999999964 5677888999999999999974
No 235
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.4e-09 Score=132.43 Aligned_cols=394 Identities=10% Similarity=0.038 Sum_probs=242.9
Q ss_pred cccccceeEEEEccCCCCEEEEEEcCC------------CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 000454 228 TMVQKMQNIKRVRGHRNAVYCAIFDRS------------GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS 295 (1491)
Q Consensus 228 ~~v~t~k~v~tL~GH~~~Vt~VaFSpD------------G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSP 295 (1491)
.+..+.+.++++.-|...|+.|.|.|- .-+||++...|.|.|||...+..+..+..|..+|.+++|-+
T Consensus 40 VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence 344667889999999999999999873 12577788889999999999999999999999999999977
Q ss_pred ---CC-CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC----ccce
Q 000454 296 ---NN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ----FSPR 367 (1491)
Q Consensus 296 ---DG-~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~----~~~~ 367 (1491)
+. .+|++-....+|.+|+..+|..+...........|+.+.|-.. ..+...+..|.|.+-+.-... ..+.
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCcee
Confidence 33 3666666678999999999999888876667778899999764 256666666777666543211 1222
Q ss_pred eecCCCCCc--------ccCCCCCCCCCCCCCCc---ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 368 IYIPRPSDA--------VAGRNMAPSSSAGPQSH---QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 368 i~~~~~~~~--------~~g~~~~~~~s~~~h~~---~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
+++..+... ..+.. ......... ....++|+|.-+.++...-...+.|+|+.- ...+
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns---~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~---------~~~l 265 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNS---TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY---------ECCL 265 (1062)
T ss_pred EEEecCccchhhhhhhhhcccc---ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh---------hcee
Confidence 222222111 00100 000000111 122467788665555555567788999853 3344
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEE--------------------
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW-------------------- 496 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIW-------------------- 496 (1491)
....-..+.+.-+.|-|++. .+.|++...||.+.+|
T Consensus 266 ~vvpier~~akfv~vlP~~~------------------------rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl 321 (1062)
T KOG1912|consen 266 AVVPIERGGAKFVDVLPDPR------------------------RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDL 321 (1062)
T ss_pred EEEEeccCCcceeEeccCCC------------------------cceEEEEecCCeEEEEEeeccCccccccchhhcccc
Confidence 44444555566666666541 2344455555555555
Q ss_pred ----------------------------------------ecCCCCCCcccccccccc--ccCCCCCCCCCCCCCCCCce
Q 000454 497 ----------------------------------------IPRSRRSHPKAARWTQAY--HLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 497 ----------------------------------------Dl~s~k~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~ 534 (1491)
.+.+++.+.....-.... .+.+..............+.
T Consensus 322 ~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS 401 (1062)
T KOG1912|consen 322 GEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLS 401 (1062)
T ss_pred ccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchh
Confidence 444322211100000000 00000000000000000000
Q ss_pred eccCCCCCeeEEEEcC-----------CC-------CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 535 RILPTPRGVNMIVWSL-----------DN-------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSP-----------DG-------~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
.--.|..+.++....| .| .++|.|...|+|.|+|+.++.....+..|+..|.++.|-. ..
T Consensus 402 ~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g--~s 479 (1062)
T KOG1912|consen 402 DDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NS 479 (1062)
T ss_pred hcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc--ce
Confidence 1112344444433322 22 2678899999999999999999999999999999999964 33
Q ss_pred EEEEEe----------CCCcEEEEeCCCCceE--EEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 597 IAMSAG----------YDGKTIVWDIWEGIPI--RIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 597 lLaSgS----------~DGtIrIWDl~tGk~l--~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
-|++.+ .-+.+.|-|+.+|... +.++ ....+|..+..|.-|+||++.-.+--+-|||+.+-..+.
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 333433 2345778899888543 3233 234589999999999999999999999999997766543
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.7e-09 Score=133.88 Aligned_cols=234 Identities=16% Similarity=0.051 Sum_probs=150.1
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.+||.. |.....+..|...+.+.+|+||++ .|+..+. +..|.+||+.++......
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~~~l~--------------- 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQRELVG--------------- 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcEEEee---------------
Confidence 378899974 555566777888999999999997 6666543 468999999887642211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEE-EecCCce--EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~La-sGs~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.....+...+|+|||+.|+ +.+.++. |++||+.++ ....+..+........|+|++
T Consensus 243 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----------~~~~Lt~~~~~~~~~~~spDG----- 301 (435)
T PRK05137 243 ------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG----------TTTRLTDSPAIDTSPSYSPDG----- 301 (435)
T ss_pred ------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC----------ceEEccCCCCccCceeEcCCC-----
Confidence 1233466789999998775 4445554 777787642 234455566667778999986
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEe-CCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|+..+ .+| .|.+||+.++. ...+.
T Consensus 302 ---------------------~~i~f~s~~~g~~~Iy~~d~~g~~------------------------------~~~lt 330 (435)
T PRK05137 302 ---------------------SQIVFESDRSGSPQLYVMNADGSN------------------------------PRRIS 330 (435)
T ss_pred ---------------------CEEEEEECCCCCCeEEEEECCCCC------------------------------eEEee
Confidence 4555444 344 56666665422 11222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEE
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD-----GKTIV 609 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D-----GtIrI 609 (1491)
.....+....|+|||++|+....+ ..|.+||+.++.. ..+. ....+..+.|+|++..+++++... ..|.+
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 223345668899999999887643 3688999865543 3333 223467889999655555544433 35788
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|+..+.. ..+. ..+.+...+|+|
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCC
Confidence 88855544 4444 344566778876
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.6e-08 Score=120.96 Aligned_cols=364 Identities=13% Similarity=0.170 Sum_probs=223.9
Q ss_pred eEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 266 LVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH---~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
.+.+|.........+...+ ...+...+++++|+++|.+. +..|+|++..++..+.+... ..++++.|+|.+.
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~-- 86 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGN-- 86 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeeccccc--
Confidence 3677776543333332223 44577888999998888765 56899999988864444432 2799999999987
Q ss_pred EEEEEE-----eCC-----CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC
Q 000454 343 YQLLSS-----SDD-----GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 343 ~~LaSg-----S~D-----GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~ 412 (1491)
+|.+- ..+ -.+.+|++.++.....+.. ....+ ++..|+.|..+. +--.
T Consensus 87 -yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~------------------k~Q~~--W~~qfs~dEsl~-arlv 144 (566)
T KOG2315|consen 87 -YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQK------------------KMQNG--WVPQFSIDESLA-ARLV 144 (566)
T ss_pred -ccccccccccccCCCCCCCceeeeeeccceehhheeh------------------hhhcC--cccccccchhhh-hhhh
Confidence 55442 222 2467999888544333321 01111 588888887543 3333
Q ss_pred CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE-----E
Q 000454 413 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-----C 487 (1491)
Q Consensus 413 DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS-----g 487 (1491)
.+.+.+|++..- ....-.-|...|..+.++|... +..+++ .
T Consensus 145 ~nev~f~~~~~f----------~~~~~kl~~~~i~~f~lSpgp~------------------------~~~vAvyvPe~k 190 (566)
T KOG2315|consen 145 SNEVQFYDLGSF----------KTIQHKLSVSGITMLSLSPGPE------------------------PPFVAVYVPEKK 190 (566)
T ss_pred cceEEEEecCCc----------cceeeeeeccceeeEEecCCCC------------------------CceEEEEccCCC
Confidence 567999998541 1122234567788888888641 123332 3
Q ss_pred eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-Ee--c----
Q 000454 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AI--M---- 560 (1491)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-Gs--~---- 560 (1491)
+.-+.++||...-...+... ..+.+ ....-..+.|.+-|.-|++ ++ -
T Consensus 191 GaPa~vri~~~~~~~~~~~~------------------------a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPV------------------------ANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred CCCcEEEEeccccccccchh------------------------hhccc--cccceeEEEeccCCceEEEEEEEeecCCC
Confidence 44567888865521111000 00001 1112234678877764332 22 2
Q ss_pred -----cceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEeeCCcceEEEEEc
Q 000454 561 -----DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1491)
Q Consensus 561 -----DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS-~DGtIrIWDl~tGk~l~~l~~h~~~VtslafS 634 (1491)
..+++++++....++..+. -.++|.++.|+|.+..+.++-| .-..+.|+|+ .+.++..+. .++-.++-|+
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--egpRN~~~fn 320 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFN 320 (566)
T ss_pred ccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC--CCCccceEEC
Confidence 2368888887444444443 4789999999996665655544 5678999999 677776664 6677889999
Q ss_pred CCCCEEEEEeC---CCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCC
Q 000454 635 PDGASIILSDD---VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 711 (1491)
Q Consensus 635 PDG~~LAsgs~---DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p 711 (1491)
|.|++|+.++- -|.|-|||+.+-+++.... +
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--------------------------------------a-------- 354 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--------------------------------------A-------- 354 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhccccc--------------------------------------c--------
Confidence 99999998754 5899999986643332110 0
Q ss_pred CcchhhhhhcccccccEEEcCCCCeEEEe---eCCCCCCcEEeccCCCcccccc-CCc-ccccccccccCCcC
Q 000454 712 EPYQTMYQQRRLGALGIEWRPSSLKLAVG---PDFSLDQGYQLQPLADLDVMID-PLP-EFIDVMDWEPENEV 779 (1491)
Q Consensus 712 ~~~q~l~q~~~~~vl~lafSPDG~~LAvg---~d~s~d~~v~lw~~~~~~~lie-plp-~~i~~~~W~P~~ev 779 (1491)
....-.+|+|||.++.++ |..-+|..+.+|+.. +..+-+ ..+ ++-. +.|.|....
T Consensus 355 -----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~q-v~W~P~~~~ 414 (566)
T KOG2315|consen 355 -----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQ-VEWRPFNDK 414 (566)
T ss_pred -----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhh-eeeeecCCc
Confidence 001127899999999987 366778899999985 332322 233 3443 778877664
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.22 E-value=3.3e-11 Score=140.00 Aligned_cols=229 Identities=15% Similarity=0.183 Sum_probs=184.6
Q ss_pred eEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE
Q 000454 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1491)
Q Consensus 330 VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~Las 409 (1491)
-+.+.++.+|. .|+.++.-|.|..+|+.++.+...+.+ ...|..+.|-.+.++||+
T Consensus 132 PY~~~ytrnGr---hlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 132 PYHLDYTRNGR---HLLLGGRKGHLAAFDWVTKKLHFEINV---------------------METVRDVTFLHNEQFFAV 187 (545)
T ss_pred CeeeeecCCcc---EEEecCCccceeeeecccceeeeeeeh---------------------hhhhhhhhhhcchHHHHh
Confidence 46788999987 899999999999999999998877743 455888899888888887
Q ss_pred ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC
Q 000454 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1491)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~ 489 (1491)
+- ...++|||-. +..+..+..| ..|..+.|.|.- -.|++++.
T Consensus 188 AQ-K~y~yvYD~~----------GtElHClk~~-~~v~rLeFLPyH--------------------------fLL~~~~~ 229 (545)
T KOG1272|consen 188 AQ-KKYVYVYDNN----------GTELHCLKRH-IRVARLEFLPYH--------------------------FLLVAASE 229 (545)
T ss_pred hh-hceEEEecCC----------CcEEeehhhc-Cchhhhcccchh--------------------------heeeeccc
Confidence 64 5689999874 3455555554 467888888863 37888999
Q ss_pred CCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 490 DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
.|.+..-|+.+++.. ..+....+.+..++-.|-+..+-+|...|+|.+|..
T Consensus 230 ~G~L~Y~DVS~GklV-----------------------------a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKLV-----------------------------ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred CCceEEEeechhhhh-----------------------------HHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 999999999876532 223334456677888898889999999999999999
Q ss_pred CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcE
Q 000454 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQL 649 (1491)
Q Consensus 570 ~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I 649 (1491)
...+++..+..|.++|.+|++.+ +++++||+|.|..|+|||+..-..+.++.. ..+...++||..|- ||++ ....|
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA~~-~G~~v 356 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LALS-YGDHV 356 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc-eeee-cCCee
Confidence 99999999999999999999999 889999999999999999998888877775 56788899997773 3433 33578
Q ss_pred EEEE
Q 000454 650 YILN 653 (1491)
Q Consensus 650 ~IWd 653 (1491)
.||.
T Consensus 357 ~iw~ 360 (545)
T KOG1272|consen 357 QIWK 360 (545)
T ss_pred eeeh
Confidence 9995
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.19 E-value=3.3e-09 Score=119.28 Aligned_cols=239 Identities=14% Similarity=0.202 Sum_probs=156.3
Q ss_pred ceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEE
Q 000454 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1491)
Q Consensus 329 ~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~La 408 (1491)
....++|..|.. .+++|..+| .+||+++.-+....... ...+-.+.-|-| ..++||
T Consensus 7 ~~lsvs~NQD~S---cFava~~~G-friyn~~P~ke~~~r~~------------------~~~G~~~veMLf--R~N~la 62 (346)
T KOG2111|consen 7 KTLSVSFNQDHS---CFAVATDTG-FRIYNCDPFKESASRQF------------------IDGGFKIVEMLF--RSNYLA 62 (346)
T ss_pred ceeEEEEccCCc---eEEEEecCc-eEEEecCchhhhhhhcc------------------ccCchhhhhHhh--hhceEE
Confidence 345599999976 777777777 89998875222111100 001111222222 123333
Q ss_pred -EecCC------ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 409 -TGSSD------TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 409 -sGs~D------G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
+|+.. ..|.|||-.. ..++..+ .....|.+|.+.++
T Consensus 63 LVGGg~~pky~pNkviIWDD~k---------~~~i~el-~f~~~I~~V~l~r~--------------------------- 105 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLK---------ERCIIEL-SFNSEIKAVKLRRD--------------------------- 105 (346)
T ss_pred EecCCCCCCCCCceEEEEeccc---------CcEEEEE-EeccceeeEEEcCC---------------------------
Confidence 33332 4789999532 2334333 34567888888764
Q ss_pred CeEEEEeCCCeEEEEecCCC-CCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-Ee
Q 000454 482 DNIVTCSRDGSAIIWIPRSR-RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AI 559 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~-k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-Gs 559 (1491)
.||+. ..+.|.||.+.+. +.. ........+.++.+++-.-+-.+||. |-
T Consensus 106 -riVvv-l~~~I~VytF~~n~k~l---------------------------~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 106 -RIVVV-LENKIYVYTFPDNPKLL---------------------------HVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred -eEEEE-ecCeEEEEEcCCChhhe---------------------------eeeecccCCCceEeecCCCCceEEEcCCC
Confidence 44443 4678999987631 100 00011112233434433333344444 45
Q ss_pred ccceEEEEECCCCce--EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeeCC--cceEEEEEc
Q 000454 560 MDCRICVWNAADGSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK-TIVWDIWEGIPIRIYEISR--FRLVDGKFS 634 (1491)
Q Consensus 560 ~DG~IrIWDl~tgkl--l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt-IrIWDl~tGk~l~~l~~h~--~~VtslafS 634 (1491)
.-|.|+|-|+..-+. ...+.+|...|.|++.+- .+.++||+|..|+ |+|||..+|+++..+..+. ..|++++||
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 678999999976555 477889999999999998 7899999999996 6999999999999998553 479999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc
Q 000454 635 PDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 635 PDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
||+.+||++++.|+|+||.+....
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999999986644
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=2.2e-09 Score=121.26 Aligned_cols=284 Identities=13% Similarity=0.176 Sum_probs=180.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-----ceeeeccCC------------CceEEEEecCCCCceEEEEE
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PISVLRGHT------------AAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk-----~i~~L~gHs------------~~VtsLaFSPdg~s~~~LaS 347 (1491)
..-|.+|.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|.++++. ..++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~-a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL-AEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc-cEEEE
Confidence 4678999999999999999999999999643221 223344443 35888999998754 36777
Q ss_pred EeCCCcEEEEccCCCCccc---------------eeecCCCCCccc-CCCCCCCCCCCCCCcceEEEEECCCCCEEEEec
Q 000454 348 SSDDGTCRIWDARYSQFSP---------------RIYIPRPSDAVA-GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1491)
Q Consensus 348 gS~DGtVrIWDl~tg~~~~---------------~i~~~~~~~~~~-g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs 411 (1491)
.+.|.+|++|.+....... .+.+|....... -...........|...|.+++++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8889999999886443222 000000000000 000111223356788899999999999888764
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCC-----CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-----~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS 486 (1491)
|=.|.+|++.-... .. .+..++.+ +.-|++..|+|.. .+.|+-
T Consensus 184 -dLRINLWnlei~d~-----sF-nIVDIKP~nmEeLteVITsaEFhp~~-------------------------cn~f~Y 231 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQ-----SF-NIVDIKPANMEELTEVITSAEFHPHH-------------------------CNVFVY 231 (433)
T ss_pred -ceeeeeccccccCC-----ce-eEEEccccCHHHHHHHHhhhccCHhH-------------------------ccEEEE
Confidence 77899999864221 11 11122222 2346666777653 357889
Q ss_pred EeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEE
Q 000454 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1491)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrI 566 (1491)
.+..|+|++-|++....-.. .... ...+.......-+..--..|..+.|++.|+|+++-.. -+|+|
T Consensus 232 SSSKGtIrLcDmR~~aLCd~---hsKl----------fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~ 297 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDA---HSKL----------FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL 297 (433)
T ss_pred ecCCCcEEEeechhhhhhcc---hhhh----------hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence 99999999999985221000 0000 0001111111112223356888999999999998643 58999
Q ss_pred EEC-CCCceEEEEeCCCC------------Ce---EEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 567 WNA-ADGSLVHSLTGHTE------------ST---YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 567 WDl-~tgkll~tL~gHs~------------~V---tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
||+ ...+++.++.-|.. .| .-++|+- +..+++||+....++++++..|.
T Consensus 298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCc
Confidence 999 56777777766632 22 4477877 56788899999999999987664
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.18 E-value=1.4e-08 Score=119.93 Aligned_cols=362 Identities=12% Similarity=0.128 Sum_probs=230.1
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEE
Q 000454 268 KIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 268 rIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaS 347 (1491)
.+|...+...-..+..-.-++..++|||.|++|++....| |.+|.-..+..+..+. | ..|..+.|+|.+. +|.+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~k---YL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEK---YLVT 88 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccc---eeee
Confidence 3455555444444444677899999999999999987664 9999988777555554 3 5699999999998 8888
Q ss_pred EeCCCc---------------EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE-EEEECCCCCEEEEec
Q 000454 348 SSDDGT---------------CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF-CCAFNANGTVFVTGS 411 (1491)
Q Consensus 348 gS~DGt---------------VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~-slafSPDG~~LasGs 411 (1491)
-+..+. +.+||+.++..+..+.... .....+ -+.|+-+..++|-.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~------------------q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS------------------QPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccC------------------Ccccccceeeeeecchhhhhh-
Confidence 765443 9999999998776653211 111123 56788777766544
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE-----
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT----- 486 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS----- 486 (1491)
....+.|+++ +.+.. ..+...+. ...|....|+|.+- +..|+.
T Consensus 150 v~~sl~i~e~-t~n~~-----~~p~~~lr--~~gi~dFsisP~~n------------------------~~~la~~tPEk 197 (561)
T COG5354 150 VGSSLYIHEI-TDNIE-----EHPFKNLR--PVGILDFSISPEGN------------------------HDELAYWTPEK 197 (561)
T ss_pred ccCeEEEEec-CCccc-----cCchhhcc--ccceeeEEecCCCC------------------------CceEEEEcccc
Confidence 3456889997 33221 11122222 34577778887641 122332
Q ss_pred EeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-------
Q 000454 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI------- 559 (1491)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs------- 559 (1491)
....++++||.+...... ....-....-..+.|.+.|.+|++-.
T Consensus 198 ~~kpa~~~i~sIp~~s~l-----------------------------~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 198 LNKPAMVRILSIPKNSVL-----------------------------VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred CCCCcEEEEEEccCCCee-----------------------------eeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 345677777766532211 00000111123577888888876532
Q ss_pred ----ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEc
Q 000454 560 ----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1491)
Q Consensus 560 ----~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg-S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafS 634 (1491)
....++|+++.. .-+....+-.++|..++|.|.+.++.+.. -.+..+.++|+... +...+ ....=..+.||
T Consensus 249 KsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fs 324 (561)
T COG5354 249 KSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFS 324 (561)
T ss_pred cceeccceEEEEeecc-cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCccccccccc
Confidence 134688898863 33333336688999999999777766554 57889999999544 43333 34455678899
Q ss_pred CCCCEEEEEeC---CCcEEEEECCCCcccc-----cccceeeecCCCcceEEccCCCEEEccccccCccccCCCcccccc
Q 000454 635 PDGASIILSDD---VGQLYILNTGQGESQK-----DAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSA 706 (1491)
Q Consensus 635 PDG~~LAsgs~---DG~I~IWdl~tG~~~~-----~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s 706 (1491)
|.++++++++- .|.|.||+........ .-..-+.|+||+..+..+..+..+..+.. ..+|++....+
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~--i~l~~v~g~~~--- 399 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS--IKLWDVYGAKV--- 399 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc--eEEEEecCchh---
Confidence 99999998755 4789999986543322 11244578888888777766665432222 25676433221
Q ss_pred CCCCCCcchhhhhhcccccccEEEcCCCCeEEEe
Q 000454 707 MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVG 740 (1491)
Q Consensus 707 ~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg 740 (1491)
...+.+.|.|.|++..+.
T Consensus 400 ----------------fel~~~~W~p~~~~~tts 417 (561)
T COG5354 400 ----------------FELTNITWDPSGQYVTTS 417 (561)
T ss_pred ----------------hhhhhccccCCcccceee
Confidence 134568999999888876
No 242
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.17 E-value=6.4e-08 Score=115.10 Aligned_cols=264 Identities=16% Similarity=0.132 Sum_probs=170.8
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCCceeeeccC-------C
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGH-------T 327 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~----------DGtIrVWDl~tgk~i~~L~gH-------s 327 (1491)
++|.|.|..+++.+.++.....+-. + ++|||+.|+.+.. +..|.|||+.+.+.+..+... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998875443333 4 9999998877765 678999999999998887632 2
Q ss_pred CceEEEEecCCCCceEEEEEEe-C-CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSS-D-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS-~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
.....++++|+++ +|++.. . +..|.++|+.+++.+..+.. |++.
T Consensus 105 ~~~~~~~ls~dgk---~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------------------------------p~~~ 150 (352)
T TIGR02658 105 TYPWMTSLTPDNK---TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------------------------------PDCY 150 (352)
T ss_pred CccceEEECCCCC---EEEEecCCCCCEEEEEECCCCcEEEEEeC-------------------------------CCCc
Confidence 2345789999998 666554 3 78999999999988777632 4444
Q ss_pred EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEE
Q 000454 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~La 485 (1491)
.++..+.++...+| .++ ....+
T Consensus 151 ~vy~t~e~~~~~~~---------------------------------~Dg-------------------------~~~~v 172 (352)
T TIGR02658 151 HIFPTANDTFFMHC---------------------------------RDG-------------------------SLAKV 172 (352)
T ss_pred EEEEecCCccEEEe---------------------------------ecC-------------------------ceEEE
Confidence 44333322211111 000 00111
Q ss_pred EEeCCCeEE-----EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCCEEEEEe
Q 000454 486 TCSRDGSAI-----IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAI 559 (1491)
Q Consensus 486 SgS~DGtIr-----IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSGs 559 (1491)
+-..+|... +++... . -+..+ + .|++ +|+++++..
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~------------------------------~---~v~~r--P----~~~~~dg~~~~vs~ 213 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPED------------------------------E---YLINH--P----AYSNKSGRLVWPTY 213 (352)
T ss_pred EecCCCceEEeeeeeecCCc------------------------------c---ccccC--C----ceEcCCCcEEEEec
Confidence 111122211 111100 0 00001 1 2345 788877776
Q ss_pred ccceEEEEECCC-----CceEEEEeC-------CCCCeEEEEEecCCCcEEEEE-e--------CCCcEEEEeCCCCceE
Q 000454 560 MDCRICVWNAAD-----GSLVHSLTG-------HTESTYVLDVHPFNPRIAMSA-G--------YDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 560 ~DG~IrIWDl~t-----gkll~tL~g-------Hs~~VtsLafSPdd~~lLaSg-S--------~DGtIrIWDl~tGk~l 618 (1491)
. |.|++.|+.. ...+..+.. ..+.+.-++++|+++++++.. + ..+.|.++|..+++.+
T Consensus 214 e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 214 T-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred C-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 6 9999999543 233333221 233455699999777766633 1 1258999999999999
Q ss_pred EEEeeCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCcccccc
Q 000454 619 RIYEISRFRLVDGKFSPDGA-SIILSD-DVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSPDG~-~LAsgs-~DG~I~IWdl~tG~~~~~~ 663 (1491)
..+... ..+..++|+|||+ +|++.. .++.|.|+|+.+++.++..
T Consensus 293 ~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 293 RKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999854 4788999999999 887766 5788999999999876654
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.16 E-value=5.7e-09 Score=127.86 Aligned_cols=233 Identities=16% Similarity=0.061 Sum_probs=146.8
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCC
Q 000454 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~ 340 (1491)
...|.++|.. +.....+..+...+.+.+|+|||++||.++.. ..|++|++.+++... +..+.+.+.+++|+|+++
T Consensus 169 ~~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3468888875 44445555677789999999999999987654 479999998886543 334556677899999987
Q ss_pred ceEEEE-EEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--
Q 000454 341 SVYQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT-- 414 (1491)
Q Consensus 341 s~~~La-SgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG-- 414 (1491)
.|+ +.+.++ .|.+|++.++...... .+........|+|+|+.|+..+. .+
T Consensus 247 ---~l~~~~~~~~~~~i~~~d~~~~~~~~l~---------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~ 302 (417)
T TIGR02800 247 ---KLAVSLSKDGNPDIYVMDLDGKQLTRLT---------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSP 302 (417)
T ss_pred ---EEEEEECCCCCccEEEEECCCCCEEECC---------------------CCCCCCCCEEECCCCCEEEEEECCCCCc
Confidence 444 445444 5888888776432111 01122345689999998876554 33
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC---
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--- 491 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG--- 491 (1491)
.|++|++.++ ....+..+...+..+.|+|++ ..++.++.++
T Consensus 303 ~iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg--------------------------~~i~~~~~~~~~~ 346 (417)
T TIGR02800 303 QIYMMDADGG----------EVRRLTFRGGYNASPSWSPDG--------------------------DLIAFVHREGGGF 346 (417)
T ss_pred eEEEEECCCC----------CEEEeecCCCCccCeEECCCC--------------------------CEEEEEEccCCce
Confidence 5777777532 122334445566778898876 4666666655
Q ss_pred eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc---eEEEEE
Q 000454 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWN 568 (1491)
Q Consensus 492 tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWD 568 (1491)
.|.+||+.++.. ..+. ........+|+|||++|+.++.++ .+++.+
T Consensus 347 ~i~~~d~~~~~~------------------------------~~l~-~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 347 NIAVMDLDGGGE------------------------------RVLT-DTGLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred EEEEEeCCCCCe------------------------------EEcc-CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 677888765220 0000 011123457999999998877654 455655
Q ss_pred CCCCceEEEEeCCCCCeEEEEE
Q 000454 569 AADGSLVHSLTGHTESTYVLDV 590 (1491)
Q Consensus 569 l~tgkll~tL~gHs~~VtsLaf 590 (1491)
. +|.....+..+.+.+..++|
T Consensus 396 ~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 T-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CCceeeECCCCCCCcCCCCC
Confidence 4 45555555544444444444
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=5.7e-09 Score=131.83 Aligned_cols=150 Identities=25% Similarity=0.399 Sum_probs=126.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee-eeccCC
Q 000454 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-VLRGHT 327 (1491)
Q Consensus 249 VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~-~L~gHs 327 (1491)
+-++++.-++++|+.-+.|.+|+..--..-..+.||.+.|.++.|+-||.++++.|.|.++++|.+.+.+... +.-+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 4467777899999999999999987333333588999999999999999999999999999999999988776 677899
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L 407 (1491)
+.|+.++|.|. .+++++.|.++++|+....++. .+ .......|+.++..++...+
T Consensus 219 aRvw~~~~~~n-----~i~t~gedctcrvW~~~~~~l~-~y-------------------~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 219 ARVWACCFLPN-----RIITVGEDCTCRVWGVNGTQLE-VY-------------------DEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ceeEEEEeccc-----eeEEeccceEEEEEecccceeh-hh-------------------hhhhhcceeEEEEcCCceEE
Confidence 99999999997 6999999999999976544322 21 12245669999999999999
Q ss_pred EEecCCceEEEEeCCC
Q 000454 408 VTGSSDTLARVWNACK 423 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t 423 (1491)
++++.|+.+++|++..
T Consensus 274 vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeeccCcchhhhhhhc
Confidence 9999999999999854
No 245
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=3.1e-08 Score=120.09 Aligned_cols=311 Identities=12% Similarity=0.056 Sum_probs=187.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLa 334 (1491)
+.+|++++.+|.|..+|..+|+.+....-.......++. ++..++.++.++.|..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 568888889999999999999998876643332223332 4677888889999999999999988766532 2222211
Q ss_pred ecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCc
Q 000454 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414 (1491)
Q Consensus 335 FSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG 414 (1491)
... +. .++.++.+|.|..||..+++.+.......+... ..... +..+. + ..++++..+|
T Consensus 142 ~v~-~~---~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-----------~~~~~----sp~~~-~-~~v~~~~~~g 200 (377)
T TIGR03300 142 LVA-NG---LVVVRTNDGRLTALDAATGERLWTYSRVTPALT-----------LRGSA----SPVIA-D-GGVLVGFAGG 200 (377)
T ss_pred EEE-CC---EEEEECCCCeEEEEEcCCCceeeEEccCCCcee-----------ecCCC----CCEEE-C-CEEEEECCCC
Confidence 111 22 577788899999999999987666532111000 00000 01111 2 3677788889
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
.+..+|+.++...-.. ......+.. .+..+.. ........++.+++++.+|.+.
T Consensus 201 ~v~ald~~tG~~~W~~----~~~~~~g~~-~~~~~~~---------------------~~~~p~~~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQ----RVALPKGRT-ELERLVD---------------------VDGDPVVDGGQVYAVSYQGRVA 254 (377)
T ss_pred EEEEEEccCCCEeeee----ccccCCCCC-chhhhhc---------------------cCCccEEECCEEEEEEcCCEEE
Confidence 9999998764321000 000000000 0000000 0000111245788888999999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl 574 (1491)
.||+.+++. .|.... ......+ .++..|++++.+|.|+.+|..+|+.
T Consensus 255 a~d~~tG~~-----~W~~~~--------------------------~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 255 ALDLRSGRV-----LWKRDA--------------------------SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEECCCCcE-----EEeecc--------------------------CCccCce--EeCCEEEEECCCCeEEEEECCCCcE
Confidence 999987542 232110 0011111 2466788888999999999999988
Q ss_pred EEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 575 VHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 575 l~tL~gHs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
+........ ....... .+..|++++.+|.|++||..+|+.+..+..+...+..--...++ .|++++.||.|+.|
T Consensus 302 ~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 766532211 1222222 23466678999999999999999999998665444332222333 58888999999876
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.14 E-value=1.8e-09 Score=119.09 Aligned_cols=117 Identities=20% Similarity=0.369 Sum_probs=92.6
Q ss_pred CCCeeEEEEcCCCCEEEEE--eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCC
Q 000454 540 PRGVNMIVWSLDNRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWE 614 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSG--s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~---DGtIrIWDl~t 614 (1491)
...|..++|+|+|+.||+. ..+..|.|||+. ++.+..+. ...+..|.|+| .+++|++|+. .|.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 4469999999999987654 467799999996 77777764 46678999999 5667777764 46799999999
Q ss_pred CceEEEEeeCCcceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcccccc
Q 000454 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 615 Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~------DG~I~IWdl~tG~~~~~~ 663 (1491)
.+.+..+. +..++.++|||||++|+++.. |..++||++ +|+.+...
T Consensus 135 ~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 135 KKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99888876 345789999999999998753 789999998 46554433
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.1e-08 Score=121.43 Aligned_cols=316 Identities=11% Similarity=0.122 Sum_probs=193.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEE
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-----------DCIIRVWR 313 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~-----------DGtIrVWD 313 (1491)
.-+-+.|||-|.||+|-..-| |.+|--.+...++.+. |. .|.-+.|||+.+||+|-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 457789999999999998877 8899877666666664 44 5899999999999999753 25799999
Q ss_pred CCCCCceeeeccC--CCceE-EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 314 LPDGLPISVLRGH--TAAVT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 314 l~tgk~i~~L~gH--s~~Vt-sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
+.+|...+.+... ...++ -..||.|++ ++|.-..+ .|.||+...-.++... .-
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdK---y~Arm~~~-sisIyEtpsf~lld~K--------------------sl 344 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDK---YFARMTGN-SISIYETPSFMLLDKK--------------------SL 344 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCc---eeEEeccc-eEEEEecCceeeeccc--------------------cc
Confidence 9999988887652 22232 457999987 77766664 5889887543222111 11
Q ss_pred CCcceEEEEECCCCCEEEEecCC-----ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~D-----G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.-..|....|+|.+++||.-... ..+.+..+.+ .+.++...-|.-.=..+.|...|
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs---------~~~iRt~nlfnVsDckLhWQk~g---------- 405 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS---------KREIRTKNLFNVSDCKLHWQKSG---------- 405 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCc---------cceeeeccceeeeccEEEeccCC----------
Confidence 34458889999998877743211 1222222211 12222222222111223333322
Q ss_pred CCCCCCccccccccCCCeEEEE----------eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTC----------SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSg----------S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
++|+.- +.--.+.|+.++... ....
T Consensus 406 ----------------dyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----------------------------Ipve 440 (698)
T KOG2314|consen 406 ----------------DYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----------------------------IPVE 440 (698)
T ss_pred ----------------cEEEEEEEeeccccccceEeeEEEEEeeccC-----------------------------CCce
Confidence 222211 111123333333211 0011
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEec---cceEEEEECCC----CceEEEEeCCCCCeEEEEEecCCCcEEEEE---eCCC
Q 000454 536 ILPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAAD----GSLVHSLTGHTESTYVLDVHPFNPRIAMSA---GYDG 605 (1491)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSGs~---DG~IrIWDl~t----gkll~tL~gHs~~VtsLafSPdd~~lLaSg---S~DG 605 (1491)
.......|..++|-|.|..+++-+. ..++.+|.+.+ .+++..+.. ...+.|.|+|.| ++++.+ |..|
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG-~fvvva~l~s~~g 517 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKG-RFVVVAALVSRRG 517 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCC-cEEEEEEeccccc
Confidence 1233456888999999998877543 34688887763 234444433 345789999954 554443 4578
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeC------CCcEEEEEC
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNT 654 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~------DG~I~IWdl 654 (1491)
.+.++|+.-..+..+-...+...+.+.|.|.|+|+++++. |...+||++
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred ceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 9999999754444444445667888999999999999865 334456655
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=3.2e-09 Score=134.04 Aligned_cols=199 Identities=19% Similarity=0.243 Sum_probs=157.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC----eEEEEEcCCCCEEEEEECCCeEEEEECCCCCc
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD----ITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~----VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~ 319 (1491)
+.|....+.-+.+.++.+..+..+.|||...+..+..+...... ..-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 44555666677888999999999999999988777666533222 12233566777999999999999999874433
Q ss_pred eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEE
Q 000454 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1491)
Q Consensus 320 i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sla 399 (1491)
-..+.+|.+.|..+.|+-++. ++++++.|.++++|++.+.+.... ...+|...|+.++
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~---~i~s~SdDRsiRlW~i~s~~~~~~-------------------~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGR---YIASVSDDRSIRLWPIDSREVLGC-------------------TGFGHSARVWACC 225 (967)
T ss_pred cceecccCCceEEEEEccCCc---EEEEEecCcceeeeecccccccCc-------------------ccccccceeEEEE
Confidence 336889999999999999998 999999999999999998876541 1245899999999
Q ss_pred ECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC-CceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 400 fSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
|.|+ .|++++.|.+.++|+.. ...+..+.+|.+ .|..++..+..
T Consensus 226 ~~~n--~i~t~gedctcrvW~~~----------~~~l~~y~~h~g~~iw~~~~~~~~----------------------- 270 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGVN----------GTQLEVYDEHSGKGIWKIAVPIGV----------------------- 270 (967)
T ss_pred eccc--eeEEeccceEEEEEecc----------cceehhhhhhhhcceeEEEEcCCc-----------------------
Confidence 9998 89999999999999764 334456777754 57777777653
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCC
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
..++|++.||.+++|++....
T Consensus 271 ---~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 271 ---IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ---eEEEeeccCcchhhhhhhccc
Confidence 478999999999999988654
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=2.3e-08 Score=120.63 Aligned_cols=418 Identities=12% Similarity=0.129 Sum_probs=251.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY---------------CLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~---------------~l~tL~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
....|++|+....|||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999876431 23467899999999999999999999999999
Q ss_pred EEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.||-+-.|.-..... ...+.|.+++|..+|. .++....||.|.+=.++....-..-
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIwgKe------------------ 153 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIWGKE------------------ 153 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceecchh------------------
Confidence 9999998775443322 3456799999999998 8888899998888776644321110
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCC--CceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP--NHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~--~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
-.......+.|++|...++.+-..|.+.+||....-....... ......+......|..+.|....
T Consensus 154 ---Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~--------- 221 (1189)
T KOG2041|consen 154 ---LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP--------- 221 (1189)
T ss_pred ---cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc---------
Confidence 0122345789999999999999999999999853210000000 00001111122234455554221
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
......+...|+.+-..|.+.|..-.+. +.-.+......+.
T Consensus 222 ---------~~~v~pdrP~lavcy~nGr~QiMR~eND------------------------------~~Pvv~dtgm~~v 262 (1189)
T KOG2041|consen 222 ---------YQPVPPDRPRLAVCYANGRMQIMRSEND------------------------------PEPVVVDTGMKIV 262 (1189)
T ss_pred ---------cccCCCCCCEEEEEEcCceehhhhhcCC------------------------------CCCeEEecccEee
Confidence 0011122357999999998887533221 1111223345688
Q ss_pred EEEEcCCCCEEEEEeccc---------eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 545 MIVWSLDNRFVLAAIMDC---------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG---------~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
.+.|+++|.+||+++.+. .|.+|.. -|+.+.+++.....|++++|-. .+..++ -..|+.|.+=++...
T Consensus 263 gakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg-~gLriA-~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 263 GAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEG-TGLRIA-IAVDSFIYFANIRPE 339 (1189)
T ss_pred cceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcC-CceEEE-EEecceEEEEeeccc
Confidence 899999999999987642 4666654 4888889998889999999976 343333 345888888776421
Q ss_pred ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccccc---ceeeecCCCcceEEccCCCEEEcccccc
Q 000454 616 IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK---YDQFFLGDYRPLVQDTYGNVLDQETQLA 692 (1491)
Q Consensus 616 k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~---~~~~fs~D~r~La~d~~G~vLde~tq~~ 692 (1491)
- .+-+. ...|.-+---++ .-.-.|.+||+.+.+..-... ....|..+.-.|+......++-+...+-
T Consensus 340 y-kWgy~--e~TvVy~y~~~e-------~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le 409 (1189)
T KOG2041|consen 340 Y-KWGYI--EETVVYVYQKEE-------LPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLE 409 (1189)
T ss_pred c-eEEEe--eeEEEEEEccCC-------CcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhh
Confidence 1 11111 001110000011 112357889988776532221 2334545555555444444433221110
Q ss_pred CccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcc
Q 000454 693 PHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD 758 (1491)
Q Consensus 693 p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~ 758 (1491)
.......-.+|-..+.+....|....|. -.--.|..++++ +. ..+.+|....+.
T Consensus 410 ~~~~~~~l~LCNSIGT~lD~kytdirP~--------Fv~vn~~~vviA---S~-e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 410 NRSRVYFLQLCNSIGTSLDYKYTDIRPK--------FVCVNGICVVIA---SE-ERYFIWHYVLPK 463 (1189)
T ss_pred cccceEEEeeecccCCcCCCCcceeeee--------EEEecceEEEEe---cc-ccEEEEEEeccc
Confidence 0111112234555555655556554322 112245666665 44 468888875443
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.5e-09 Score=121.71 Aligned_cols=271 Identities=12% Similarity=0.091 Sum_probs=190.2
Q ss_pred CCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeEEEE------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 243 RNAVYCAIFDRSG--RYVITGSDDRLVKIWSMETAYCLAS------CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG--~~LATGS~DGtIrIWDl~Tg~~l~t------L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
...|..++|--++ ..|...+.+..+..+.+....+... .....+.|..++.. +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4566777776654 3455555666777777766554443 33456777777665 336778888999999998
Q ss_pred CCCC----ceeeeccCCCceEEEEecCCCCceEEEEEEeCC--CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCC
Q 000454 315 PDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD--GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 315 ~tgk----~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D--GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~ 388 (1491)
..+. ++..+..+ ..+..|.-++... ..+++|+.. ..+.|||+...+.+..-. +.......
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p--~Iva~GGke~~n~lkiwdle~~~qiw~aK-----------NvpnD~L~ 198 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDP--YIVATGGKENINELKIWDLEQSKQIWSAK-----------NVPNDRLG 198 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCC--ceEecCchhcccceeeeecccceeeeecc-----------CCCCcccc
Confidence 7542 33444433 4566777777654 367779988 889999998874333221 11111111
Q ss_pred CCCCcceEEEEECCC--CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCC
Q 000454 389 GPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1491)
Q Consensus 389 ~~h~~~V~slafSPD--G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1491)
-.-.-+++.+.|-+. ...||+++.-+.|++||.+.. .+++..+..-...|+++...|.+
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~is~~~l~p~g----------- 259 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPISSTGLTPSG----------- 259 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcceeeeecCCC-----------
Confidence 223446778899887 789999999999999999753 45666777778888898888875
Q ss_pred CCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEE
Q 000454 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1491)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 546 (1491)
+.+++|..-|.+..||++.++..+ ..+.+..+.|++|
T Consensus 260 ---------------n~Iy~gn~~g~l~~FD~r~~kl~g----------------------------~~~kg~tGsirsi 296 (412)
T KOG3881|consen 260 ---------------NFIYTGNTKGQLAKFDLRGGKLLG----------------------------CGLKGITGSIRSI 296 (412)
T ss_pred ---------------cEEEEecccchhheecccCceeec----------------------------cccCCccCCcceE
Confidence 689999999999999999755321 1245567789999
Q ss_pred EEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec
Q 000454 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 547 afSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP 592 (1491)
..+|.+++|++++-|..|+|+|+.+.++++...- ...+++|.+.+
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 9999999999999999999999999777664431 22345565544
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.11 E-value=2.7e-09 Score=117.70 Aligned_cols=148 Identities=19% Similarity=0.281 Sum_probs=107.3
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEECC-CCeEEEEEec-CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 000454 247 YCAIFDRSGRYVITGSD----------DRLVKIWSME-TAYCLASCRG-HEGDITDLAVSSNNALVASA--SNDCIIRVW 312 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~----------DGtIrIWDl~-Tg~~l~tL~g-H~~~VtsLafSPDG~lLASG--S~DGtIrVW 312 (1491)
..+.|+++|++|+.-.. -|...||-+. .+.....+.- ..++|.+++|+|+|+.||+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35779999988765433 2345555552 2333444432 35579999999999987654 456799999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|++ ++.+..+. ...+..|.|+|+|+ +|++++. .|.|.+||+.+.+.+...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~--------------------- 141 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGR---FLVLAGFGNLNGDLEFWDVRKKKKISTF--------------------- 141 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCC---EEEEEEccCCCcEEEEEECCCCEEeecc---------------------
Confidence 996 66666664 56788999999998 7787764 467999999976655443
Q ss_pred CCCcceEEEEECCCCCEEEEecC------CceEEEEeCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSS------DTLARVWNAC 422 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~------DG~IrVWDl~ 422 (1491)
....+..++|+|+|++|+++.. |..++||+..
T Consensus 142 -~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 -EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 2334789999999999999874 6788999984
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.07 E-value=2.6e-08 Score=122.16 Aligned_cols=233 Identities=15% Similarity=0.053 Sum_probs=141.9
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.++|.. +.....+..+...+...+|+|+++ +|+.+... ..|.+||+.++......
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------- 230 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREKVA--------------- 230 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEee---------------
Confidence 358888875 444455555777899999999998 66665543 47999999877532211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-ecCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.....+.+++|+|||+.|+. .+.++ .|++|++.++ ....+..+........|+|++
T Consensus 231 ------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~----------~~~~l~~~~~~~~~~~~s~dg----- 289 (417)
T TIGR02800 231 ------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK----------QLTRLTNGPGIDTEPSWSPDG----- 289 (417)
T ss_pred ------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC----------CEEECCCCCCCCCCEEECCCC-----
Confidence 12234566899999987764 44444 5888888642 123334444445567888875
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEe-CCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|+..+ ..| .|.+|++.+++ ...+.
T Consensus 290 ---------------------~~l~~~s~~~g~~~iy~~d~~~~~------------------------------~~~l~ 318 (417)
T TIGR02800 290 ---------------------KSIAFTSDRGGSPQIYMMDADGGE------------------------------VRRLT 318 (417)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEee
Confidence 4555444 344 46666655321 11122
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeccc---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeC
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDI 612 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl 612 (1491)
.+...+..++|+|+|++|+.++.++ .|++||+.++... .+... .......|+|++..++++...++ .+.+.+.
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 2334456789999999999988776 8999999876543 33322 22345689996555555554443 3455554
Q ss_pred CCCceEEEEeeCCcceEEEEE
Q 000454 613 WEGIPIRIYEISRFRLVDGKF 633 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~Vtslaf 633 (1491)
+|.....+....+.+..+.|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 45555555444444544444
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.2e-08 Score=124.30 Aligned_cols=234 Identities=12% Similarity=0.005 Sum_probs=142.2
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|+++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC--
Confidence 67778875443 34555667889999999999998877543 358899998876533 222233445789999997
Q ss_pred EEEEEEeCCCc--EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--eEE
Q 000454 343 YQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LAR 417 (1491)
Q Consensus 343 ~~LaSgS~DGt--VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG--~Ir 417 (1491)
.++++.+.+|. |.+||+.+++..... .+.......+|+|||+.|+..+. ++ .|.
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRIT---------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 23345566675 777788766532111 12233456799999998876553 34 466
Q ss_pred EEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE-eCCCeE--E
Q 000454 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSA--I 494 (1491)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg-S~DGtI--r 494 (1491)
++++.++. ...+...........|+|++ +.|+.. ..++.. .
T Consensus 334 ~~dl~~g~----------~~~Lt~~g~~~~~~~~SpDG--------------------------~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 334 RVNLASGK----------VSRLTFEGEQNLGGSITPDG--------------------------RSMIMVNRTNGKFNIA 377 (448)
T ss_pred EEECCCCC----------EEEEecCCCCCcCeeECCCC--------------------------CEEEEEEecCCceEEE
Confidence 66664421 11221122223456888886 344443 334444 4
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc-c--eEEEEECCC
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAAD 571 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D-G--~IrIWDl~t 571 (1491)
++|+.++.. ..+... .......|+|||++|+..+.+ + .|++++. +
T Consensus 378 ~~dl~~g~~------------------------------~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 378 RQDLETGAM------------------------------QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred EEECCCCCe------------------------------EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 456554221 000000 011134799999998876543 2 4788887 6
Q ss_pred CceEEEEeCCCCCeEEEEEec
Q 000454 572 GSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 572 gkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 777777777777778888987
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=3.2e-08 Score=122.26 Aligned_cols=233 Identities=14% Similarity=0.032 Sum_probs=144.7
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
.|.++|...+. ...+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.... +....+.+...+|+|+++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC--
Confidence 58888887544 45555677889999999999999887644 369999998886543 333344566789999997
Q ss_pred EEEE-EEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--eE
Q 000454 343 YQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1491)
Q Consensus 343 ~~La-SgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG--~I 416 (1491)
.|+ +...+| .|.+||+.++.... +. .+........|+|||+.|+..+. +| .|
T Consensus 256 -~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 256 -KLAFVLSKDGNPEIYVMDLASRQLSR-VT--------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred -EEEEEEccCCCceEEEEECCCCCeEE-cc--------------------cCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 454 555555 57888988765322 11 11223455789999998776553 33 56
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC-CC--eE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DG--SA 493 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-DG--tI 493 (1491)
+++++.++. ...+...........|+|++ +.|+..+. ++ .|
T Consensus 314 y~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg--------------------------~~i~~~~~~~~~~~l 357 (430)
T PRK00178 314 YKVNVNGGR----------AERVTFVGNYNARPRLSADG--------------------------KTLVMVHRQDGNFHV 357 (430)
T ss_pred EEEECCCCC----------EEEeecCCCCccceEECCCC--------------------------CEEEEEEccCCceEE
Confidence 677765432 11111111223456788876 35544443 33 47
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECC
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~ 570 (1491)
.+||+.++.. ..+. .........|+|||++|+..+.+ ..|+++++.
T Consensus 358 ~~~dl~tg~~------------------------------~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 358 AAQDLQRGSV------------------------------RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEECCCCCE------------------------------EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7788775331 0000 01111235799999999887654 357888874
Q ss_pred CCceEEEEeCCCCCeEEEEEec
Q 000454 571 DGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 571 tgkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCceEECcCCCCCcCCCccCC
Confidence 555556665666777788877
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.06 E-value=5.8e-07 Score=108.04 Aligned_cols=317 Identities=13% Similarity=0.118 Sum_probs=184.8
Q ss_pred EEEEeCC----CeEEEEEC--CCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--C--ceee
Q 000454 258 VITGSDD----RLVKIWSM--ETAYCLASC-RGHEGDITDLAVSSNNALVASASN----DCIIRVWRLPDG--L--PISV 322 (1491)
Q Consensus 258 LATGS~D----GtIrIWDl--~Tg~~l~tL-~gH~~~VtsLafSPDG~lLASGS~----DGtIrVWDl~tg--k--~i~~ 322 (1491)
++.|+.. +.|.+|.+ .++++...- ..-......|+++|++++|.++.. .+.|..|.+... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455554 68888887 555543221 123456778999999999999877 478999988653 2 2333
Q ss_pred eccCCCceEEEEecCCCCceEEEEEEe-CCCcEEEEccCC-CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 323 LRGHTAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPdg~s~~~LaSgS-~DGtVrIWDl~t-g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
..........++++|+++ +|+++. .+|.|.++++.. +........... .+.. ..........+.++.|
T Consensus 82 ~~~~g~~p~~i~~~~~g~---~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~----~g~g---~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGR---FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH----EGSG---PNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEESSSCEEEEEECTTSS---EEEEEETTTTEEEEEEECTTSEEEEEEEEEES----EEEE---SSTTTTSSTCEEEEEE
T ss_pred eccCCCCcEEEEEecCCC---EEEEEEccCCeEEEEEccCCcccceeeeeccc----CCCC---CcccccccccceeEEE
Confidence 332345567899999987 555554 689999999987 333322111000 0000 0011223445789999
Q ss_pred CCCCCEEEEecC-CceEEEEeCCCCCCCCCCCCCceeeee-cCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SPDG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l-~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+|+|++|++... ...|.+|++...... ......+ ......-..+.|+|++
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~-----l~~~~~~~~~~G~GPRh~~f~pdg----------------------- 203 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGK-----LTPVDSIKVPPGSGPRHLAFSPDG----------------------- 203 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-T-----EEEEEEEECSTTSSEEEEEE-TTS-----------------------
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCce-----EEEeeccccccCCCCcEEEEcCCc-----------------------
Confidence 999998877543 457999998642210 1111122 2333456788999886
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
...+++...+++|.++++..... .+.........+ .-.........|+++|||++|+++
T Consensus 204 --~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~--------------~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 204 --KYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLP--------------EGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp --SEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCE--------------TTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred --CEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeecc--------------ccccccCCceeEEEecCCCEEEEE
Confidence 23456677789999998873221 111100000000 000111257789999999998886
Q ss_pred e-ccceEEEEECC--CCce--EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCceEEEEe-eCCcceEE
Q 000454 559 I-MDCRICVWNAA--DGSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIRIYE-ISRFRLVD 630 (1491)
Q Consensus 559 s-~DG~IrIWDl~--tgkl--l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl--~tGk~l~~l~-~h~~~Vts 630 (1491)
. ....|.+|++. +|.+ +..+.........++++|++..++++.-.++.|.+|++ .+|.+...-. ..-....|
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 6 46689999983 3443 33444334447899999966555555567889999976 4676554442 23345667
Q ss_pred EEE
Q 000454 631 GKF 633 (1491)
Q Consensus 631 laf 633 (1491)
|.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 766
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.04 E-value=6.2e-07 Score=119.35 Aligned_cols=364 Identities=13% Similarity=0.149 Sum_probs=213.5
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE------------------------EEEec----
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL------------------------ASCRG---- 283 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l------------------------~tL~g---- 283 (1491)
..+.+-.+ ...|.|++||||+..||....+++|.+-+-. ...+ ..|+|
T Consensus 112 ~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK 187 (928)
T PF04762_consen 112 EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGK 187 (928)
T ss_pred eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhh
Confidence 34444444 4689999999999999999989988876421 1111 01110
Q ss_pred --------------------CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCCceeeeccCCCceEEEEecC
Q 000454 284 --------------------HEGDITDLAVSSNNALVASASN---D---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1491)
Q Consensus 284 --------------------H~~~VtsLafSPDG~lLASGS~---D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSP 337 (1491)
+...-..|+|-.||.|+|+.+. . ..|+||+- .|....+-..-.+--.+++|.|
T Consensus 188 ~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrP 266 (928)
T PF04762_consen 188 AAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRP 266 (928)
T ss_pred hhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCC
Confidence 2334567899999999998875 2 57999994 4665444443444456789999
Q ss_pred CCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCc
Q 000454 338 RPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414 (1491)
Q Consensus 338 dg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG 414 (1491)
.|. +|++... .-.|.+|.- +|.....+.++. ......|..+.|++|+..||+...|.
T Consensus 267 sG~---lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~----------------~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 267 SGN---LIASSQRLPDRHDVVFFER-NGLRHGEFTLRF----------------DPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred CCC---EEEEEEEcCCCcEEEEEec-CCcEeeeEecCC----------------CCCCceeeEEEECCCCCEEEEEecCC
Confidence 997 6776654 344666653 333233332211 23456789999999999999977655
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecC-CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~g-H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
|.+|-..... +.....+.. ....+..+.|+|.. ...|...+.+|.+
T Consensus 327 -vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~-------------------------p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 327 -VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEK-------------------------PLRLHVLTSNGQY 373 (928)
T ss_pred -ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCC-------------------------CCEEEEEecCCcE
Confidence 9999886421 333333332 23345558998863 2355566555665
Q ss_pred EEEec----CCCCCC-----ccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceE
Q 000454 494 IIWIP----RSRRSH-----PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1491)
Q Consensus 494 rIWDl----~s~k~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1491)
..+++ ...... +..... .-..+.+.+......|+. ...........|..++|++++..+++-..||.|
T Consensus 374 ~~~~~~~~v~~s~~~~~~D~g~vaVI-DG~~lllTpf~~a~VPPP--Ms~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 374 EIYDFAWDVSRSPGSSPNDNGTVAVI-DGNKLLLTPFRRAVVPPP--MSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred EEEEEEEEEEecCCCCccCceEEEEE-eCCeEEEecccccCCCch--HhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 54332 211100 000000 000111111111111111 111223345679999999999989999999999
Q ss_pred EEEECCCCce--------EEEEe----------CCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCc---eEEE
Q 000454 565 CVWNAADGSL--------VHSLT----------GHTESTYVLDVHPFNPRIAMSAGYD---GKTIVWDIWEGI---PIRI 620 (1491)
Q Consensus 565 rIWDl~tgkl--------l~tL~----------gHs~~VtsLafSPdd~~lLaSgS~D---GtIrIWDl~tGk---~l~~ 620 (1491)
.+|....... ...+. .....+..++|.. ...+++....+ ..|.++++.... .+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 529 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVES 529 (928)
T ss_pred EEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEE
Confidence 9998543221 11111 1233567788876 44444444443 678888885432 3333
Q ss_pred EeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 621 YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 621 l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.......+..+...++...++.-..+|.|...+....
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 530 STEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 3334455666666666665777788899987766544
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-08 Score=114.85 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=167.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----EEEEEecCC------------CCeEEEEEcCCCC--EEEEE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-----CLASCRGHE------------GDITDLAVSSNNA--LVASA 303 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~-----~l~tL~gH~------------~~VtsLafSPDG~--lLASG 303 (1491)
.+-|.+|.|..+|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999754322 233344443 4688899998765 55666
Q ss_pred ECCCeEEEEECCCCC-----------------------------------ceeee-ccCCCceEEEEecCCCCceEEEEE
Q 000454 304 SNDCIIRVWRLPDGL-----------------------------------PISVL-RGHTAAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 304 S~DGtIrVWDl~tgk-----------------------------------~i~~L-~gHs~~VtsLaFSPdg~s~~~LaS 347 (1491)
+.|.+|++|.+.... +.+++ .+|+..|.+|.+..|.. .+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---t~lS 181 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---TFLS 181 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc---eEee
Confidence 789999999874210 00111 25788899999999986 5665
Q ss_pred EeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCC
Q 000454 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNT 426 (1491)
Q Consensus 348 gS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~ 426 (1491)
+ .|=.|-+|++.-......+.--.|.. ...-..-|++..|+|. .++|+-.+..|+|++.|++....
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~n------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPAN------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccC------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 5 46679999987443333221111110 0112345788889995 56888888999999999984321
Q ss_pred C-------CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 427 D-------DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 427 ~-------~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
- ..........-+..-...|..+.|++.| .++++ -.--+|++||+.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--------------------------ryils-RDyltvk~wD~n 301 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--------------------------RYILS-RDYLTVKLWDLN 301 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--------------------------cEEEE-eccceeEEEecc
Confidence 1 0001111112233334567888898876 34443 334789999996
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCC---eeEEEEcCCCCEEEEEeccceEEEEECCCCc
Q 000454 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG---VNMIVWSLDNRFVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 500 s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~---VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk 573 (1491)
................ ..+..+. .... -..++|+-++.++++|+....+++|++..|.
T Consensus 302 me~~pv~t~~vh~~lr---------------~kLc~lY-EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 302 MEAKPVETYPVHEYLR---------------SKLCSLY-ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccCCcceEEeehHhHH---------------HHHHHHh-hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 4221110000000000 0000000 1111 2458899999999999999999999976553
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=1.1e-07 Score=117.43 Aligned_cols=249 Identities=12% Similarity=0.043 Sum_probs=147.3
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
..|.+.|...+.. ..+......+..-+|+||++...++++...+| .|.+.++.+++......
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--------------- 228 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--------------- 228 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec---------------
Confidence 3577777654443 44544556677889999987332333444444 46777887765332221
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecC-----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~-----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
..+.....+|+|||+.|+..+. +-.+.+|++..+.. .........+........|+|+|
T Consensus 229 ------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g~~~~lt~~~~~~~~~p~wSPDG---- 292 (428)
T PRK01029 229 ------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------GKPRRLLNEAFGTQGNPSFSPDG---- 292 (428)
T ss_pred ------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------CcceEeecCCCCCcCCeEECCCC----
Confidence 1223446799999988876543 22344466643210 11122222233345678999987
Q ss_pred cccccCCCCCCCccccccccCCCeEEEE-eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSg-S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|+.. ..+|...+|.+.... .+.....+..
T Consensus 293 ----------------------~~Laf~s~~~g~~~ly~~~~~~--------------------------~g~~~~~lt~ 324 (428)
T PRK01029 293 ----------------------TRLVFVSNKDGRPRIYIMQIDP--------------------------EGQSPRLLTK 324 (428)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECcc--------------------------cccceEEecc
Confidence 445544 456766666443100 0011122222
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY--DGKTIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~--DGtIrIWDl~ 613 (1491)
....+...+|||||++|+....+ ..|++||+.+++.... ......+....|+|++..+++++.. ...|.+||+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 33456778999999999876543 4699999998876543 3333456789999965555555543 3578899998
Q ss_pred CCceEEEEeeCCcceEEEEEcCCC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPDG 637 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPDG 637 (1491)
.++...... ..+.+...+|+|-.
T Consensus 404 ~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 404 TKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCEEEeec-CCCcccCceecCCC
Confidence 777655443 45567778888854
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.01 E-value=7.8e-07 Score=106.92 Aligned_cols=283 Identities=14% Similarity=0.181 Sum_probs=171.8
Q ss_pred EEEEECC----CeEEEEEC--CCCCce--eeeccCCCceEEEEecCCCCceEEEEEEeC----CCcEEEEccCCC--Ccc
Q 000454 300 VASASND----CIIRVWRL--PDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARYS--QFS 365 (1491)
Q Consensus 300 LASGS~D----GtIrVWDl--~tgk~i--~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~----DGtVrIWDl~tg--~~~ 365 (1491)
++.|+.. +.|.+|.+ .+++.. ..+ ........++++|+++ +|+++.. .|.|..|.+... .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~---~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGR---RLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSS---EEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCC---EEEEEEccccCCCCEEEEEECCCcceeE
Confidence 4555555 68998888 444322 221 1334556789999987 7777765 578999988764 221
Q ss_pred ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeee-----
Q 000454 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVL----- 439 (1491)
Q Consensus 366 ~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l----- 439 (1491)
..-.. .........++++|++++|+++. .+|.|.+|++..... .......+
T Consensus 78 ~~~~~------------------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~-----l~~~~~~~~~~g~ 134 (345)
T PF10282_consen 78 LLNSV------------------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS-----LGEVVQTVRHEGS 134 (345)
T ss_dssp EEEEE------------------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE-----EEEEEEEEESEEE
T ss_pred Eeeee------------------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc-----cceeeeecccCCC
Confidence 11110 00344567899999999888775 589999999964210 01111111
Q ss_pred -----cCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE-EEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 440 -----SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 440 -----~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L-aSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
........++.|+|++ +++ ++.-....|.+|++...... ...
T Consensus 135 g~~~~rq~~~h~H~v~~~pdg--------------------------~~v~v~dlG~D~v~~~~~~~~~~~-----l~~- 182 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSPDG--------------------------RFVYVPDLGADRVYVYDIDDDTGK-----LTP- 182 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-TTS--------------------------SEEEEEETTTTEEEEEEE-TTS-T-----EEE-
T ss_pred CCcccccccccceeEEECCCC--------------------------CEEEEEecCCCEEEEEEEeCCCce-----EEE-
Confidence 1123345678888876 344 44445567888888753210 000
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECC--CCce--EEEEeC----CC--
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAA--DGSL--VHSLTG----HT-- 582 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~--tgkl--l~tL~g----Hs-- 582 (1491)
..............++|+|+|+++++.. .++.|.+|++. ++.+ +..+.. ..
T Consensus 183 ------------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 183 ------------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp ------------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred ------------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 0001123455688999999999987765 57789999987 4433 233321 11
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CCc--eEEEEeeCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEC--C
Q 000454 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW--EGI--PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNT--G 655 (1491)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~--tGk--~l~~l~~h~~~VtslafSPDG~~LAsgs-~DG~I~IWdl--~ 655 (1491)
.....|+++|++..++++.-....|.+|++. +|. .+..+.........++|+|+|++|+++. .++.|.+|++ .
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 2578899999666666666678899999993 343 3444544444578999999999999886 5678999876 4
Q ss_pred CCcc
Q 000454 656 QGES 659 (1491)
Q Consensus 656 tG~~ 659 (1491)
+|.+
T Consensus 325 tG~l 328 (345)
T PF10282_consen 325 TGKL 328 (345)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 5543
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=5e-08 Score=121.15 Aligned_cols=234 Identities=15% Similarity=0.038 Sum_probs=143.1
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC-CC--cEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.++|..... ...+..+...+.+..|+||++ .|+..+. ++ .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~---~La~~s~~~g~~~L~~~dl~tg~~~~lt~--------------- 259 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGR---KLAYVSFENRKAEIFVQDIYTQVREKVTS--------------- 259 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCC---EEEEEEecCCCcEEEEEECCCCCeEEecC---------------
Confidence 57777865443 345555677899999999997 5655443 33 58888988765322110
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEE-ecCCce--EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~Las-Gs~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
........+|+|||+.|+. ...+|. |++||+.++ ....+..+...+....|+|++
T Consensus 260 ------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg----------~~~~lt~~~~~~~~p~wSpDG------ 317 (448)
T PRK04792 260 ------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK----------ALTRITRHRAIDTEPSWHPDG------ 317 (448)
T ss_pred ------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC----------CeEECccCCCCccceEECCCC------
Confidence 1112336799999997765 455664 777777542 233344455566778899986
Q ss_pred cccCCCCCCCccccccccCCCeE-EEEeCCCe--EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNI-VTCSRDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~L-aSgS~DGt--IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..| ++...+|. |.++|+.+++ ...+..
T Consensus 318 --------------------~~I~f~s~~~g~~~Iy~~dl~~g~------------------------------~~~Lt~ 347 (448)
T PRK04792 318 --------------------KSLIFTSERGGKPQIYRVNLASGK------------------------------VSRLTF 347 (448)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEEec
Confidence 344 44444454 4445554322 111111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc-c--eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D-G--~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt--IrIWDl~ 613 (1491)
........+|+|||++|+..+.+ + .|.++|+.+++... +.... ......|+|++..++++...+|. |.++++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11122346899999999886553 3 56778888876533 33221 22345799976666666666654 677787
Q ss_pred CCceEEEEeeCCcceEEEEEcC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|.....+..+.+.+...+|||
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceEECcCCCCCcCCCccCC
Confidence 6777777766666677888887
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=9.9e-08 Score=117.87 Aligned_cols=235 Identities=12% Similarity=0.041 Sum_probs=142.8
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.++|...+. ...+..+...+...+|+|+++ .|+..+.+ ..|.+|++.++......
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~---~la~~s~~~~~~~l~~~~l~~g~~~~l~---------------- 239 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK---RIAYVSFEQKRPRIFVQNLDTGRREQIT---------------- 239 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCC---EEEEEEcCCCCCEEEEEECCCCCEEEcc----------------
Confidence 47788876444 455555778899999999997 66655433 35888999877532211
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEE-ecCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~Las-Gs~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
...+.+...+|+|||+.|+. ...+| .|++||+.++. ...+..+........|+|++
T Consensus 240 -----~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~~spDg------ 298 (430)
T PRK00178 240 -----NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----------LSRVTNHPAIDTEPFWGKDG------ 298 (430)
T ss_pred -----CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEcccCCCCcCCeEECCCC------
Confidence 01123446899999998874 44444 68888886532 23344455556677899886
Q ss_pred cccCCCCCCCccccccccCCCeEE-EEeCCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIV-TCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~La-SgS~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|+ +...+| .|.++++.+++. ..+..
T Consensus 299 --------------------~~i~f~s~~~g~~~iy~~d~~~g~~------------------------------~~lt~ 328 (430)
T PRK00178 299 --------------------RTLYFTSDRGGKPQIYKVNVNGGRA------------------------------ERVTF 328 (430)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCCE------------------------------EEeec
Confidence 3444 333444 455666654321 00000
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc-c--eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D-G--~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl~ 613 (1491)
........+|+|||++|+..... + .|.+||+.+++... +.. ........|+|++..++++...+| .|.++++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~- 405 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI- 405 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11122346899999999887643 2 58899998886533 321 222235689996655655554444 4667777
Q ss_pred CCceEEEEeeCCcceEEEEEcCC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPD 636 (1491)
+|.....+..+.+.+...+|||-
T Consensus 406 ~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 406 NGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 45555555545556777778763
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=1.2e-06 Score=116.57 Aligned_cols=344 Identities=13% Similarity=0.175 Sum_probs=204.8
Q ss_pred CEEEEEEcCCCCEEE--EEeCCC--eEEEEECCCC---eEEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 245 AVYCAIFDRSGRYVI--TGSDDR--LVKIWSMETA---YCLASCR-----GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LA--TGS~DG--tIrIWDl~Tg---~~l~tL~-----gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.+...+|.+....+. ++.... .|.+...... ..+..+. ...+.|.++.|-++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 566667776554443 332222 3444433322 2333443 245789999999999999999999999999
Q ss_pred ----ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC--------------
Q 000454 313 ----RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS-------------- 374 (1491)
Q Consensus 313 ----Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~-------------- 374 (1491)
+..+.. +.....-...|.+++||||.. .|+.++.+++|.+..-. ...+....+....
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E---lla~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEE---LLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcC---EEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcc
Confidence 443332 223333457899999999998 88888888888876421 1111111110000
Q ss_pred -CcccCCCCCC--------C------CCCCCCCcceEEEEECCCCCEEEEecC---C---ceEEEEeCCCCCCCCCCCCC
Q 000454 375 -DAVAGRNMAP--------S------SSAGPQSHQIFCCAFNANGTVFVTGSS---D---TLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 375 -~~~~g~~~~~--------~------~s~~~h~~~V~slafSPDG~~LasGs~---D---G~IrVWDl~t~~~~~s~~~~ 433 (1491)
....|..... . .... ....-..++|-.||.+||+.+. . ..|+||+-. +
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----------G 246 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----------G 246 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC----------c
Confidence 0000100000 0 0111 3445678999999999998874 2 478999874 1
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC---CCeEEEEecCCCCCCcccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~---DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
........-.+--.+++|.|.| +.|++... ...|.+|.-+..+ ++.
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG--------------------------~lIA~~q~~~~~~~VvFfErNGLr-hge---- 295 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSG--------------------------NLIASSQRLPDRHDVVFFERNGLR-HGE---- 295 (928)
T ss_pred eEEeccccCCCccCCccCCCCC--------------------------CEEEEEEEcCCCcEEEEEecCCcE-eee----
Confidence 1222222223334567888876 45555443 2445566433211 110
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc--eEEEEeCC-CCCeEE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGH-TESTYV 587 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk--ll~tL~gH-s~~Vts 587 (1491)
....+......|..++|++|+..||+...|. |.+|-..+.. +.+.+... ...+..
T Consensus 296 ---------------------F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 296 ---------------------FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred ---------------------EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 0111123345689999999999999987665 9999987754 33444422 234455
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeC----CCCc--------eEEEEe-----------------------eCCcceEEEE
Q 000454 588 LDVHPFNPRIAMSAGYDGKTIVWDI----WEGI--------PIRIYE-----------------------ISRFRLVDGK 632 (1491)
Q Consensus 588 LafSPdd~~lLaSgS~DGtIrIWDl----~tGk--------~l~~l~-----------------------~h~~~Vtsla 632 (1491)
+.|+|..+..|.....+|.+.++++ ..+. .+..+. .-..+|.+++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA 433 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence 9999988877777777677655432 2110 122111 1245789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 633 FSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 633 fSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
|++++..+|+-..||.|.+|.....
T Consensus 434 f~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 434 FSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCCCeEEEEECCCCEEEEEecCC
Confidence 9999998999999999999986543
No 263
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=5.7e-08 Score=115.88 Aligned_cols=257 Identities=12% Similarity=0.161 Sum_probs=171.4
Q ss_pred EEEccCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 237 KRVRGHRN--AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 237 ~tL~GH~~--~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
-.|.-|.. .|.-.-++.|-..++.-..|.+|-+...- |.... ++ -...-.+|+++.-..-|.+++....|+-+++
T Consensus 86 LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNL 162 (703)
T KOG2321|consen 86 LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHYR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL 162 (703)
T ss_pred eeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceeee-ee-cCcCCccccccCCCccEEEeecCcceEEEEc
Confidence 34445543 46666667676666666778877665432 32221 11 1122345555543333444455567999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
+.|..+..|....+.+++|..++-.. +|++|+.+|.|.+||.++...+..+....... ..........
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~hg---Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~---------s~pg~~~~~s 230 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEEHG---LLACGTEDGVVEFWDPRDKSRVGTLDAASSVN---------SHPGGDAAPS 230 (703)
T ss_pred cccccccccccccccceeeeecCccc---eEEecccCceEEEecchhhhhheeeecccccC---------CCccccccCc
Confidence 99999999998889999999999876 88889999999999999888777775432211 1112223446
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
|+++.|+.+|-.+++|+..|.|.|||+++... .+..-.+..-+|..+.|.+.+
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~------------------- 283 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTD------------------- 283 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEcccCCc--------eeecccCCccceeeecccccC-------------------
Confidence 99999999999999999999999999986321 122222334467777776542
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
....+.......++|||-.+++... .......++.+|+-|++.+
T Consensus 284 ------~q~~v~S~Dk~~~kiWd~~~Gk~~a------------------------------siEpt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 284 ------QQNKVVSMDKRILKIWDECTGKPMA------------------------------SIEPTSDLNDFCFVPGSGM 327 (703)
T ss_pred ------CCceEEecchHHhhhcccccCCcee------------------------------eccccCCcCceeeecCCce
Confidence 1223333455688999988755221 1222345889999999999
Q ss_pred EEEEeccceEEEEECCC
Q 000454 555 VLAAIMDCRICVWNAAD 571 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~t 571 (1491)
+++|-.++.+..|=+..
T Consensus 328 ~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPS 344 (703)
T ss_pred EEEecCCCcceeEEccc
Confidence 99998887776665543
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.94 E-value=1.6e-06 Score=101.58 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=113.7
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccc-eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG-~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
.++...|.-..+.-++.-++.|..|| .|-|+|..+++ +..+...-+.|.++..+| ++++++.+.....|.+.|+.+|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 45666788888888888999999999 89999998765 445556677899999999 7777778888889999999999
Q ss_pred ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCcccccc-----cceeeecCCCcceEEc
Q 000454 616 IPIRIYEISRFRLVDGKFSPDGASIILSDDVG----QLYILNTGQGESQKDA-----KYDQFFLGDYRPLVQD 679 (1491)
Q Consensus 616 k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG----~I~IWdl~tG~~~~~~-----~~~~~fs~D~r~La~d 679 (1491)
.....-+...+-|+.+.|+|++++||-+--+| .|+++|+..++..... .++.+|.+|++.|.+-
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 87666665667899999999999999886555 7899999998864422 3566888888887543
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=3e-07 Score=113.59 Aligned_cols=242 Identities=12% Similarity=0.058 Sum_probs=143.5
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE---EEECC--CeEEEEECCCCCceeeeccCCCceEEEEecCCC
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA---SASND--CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLA---SGS~D--GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg 339 (1491)
..|.+.|...+. ...+......+.+-+|+|||+.++ +...+ ..|.+.++.+++.... ....+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 467788876444 344554566678889999997522 33333 3578889887765433 3345556678999999
Q ss_pred CceEEEEEEe-CCC----cEEEEccCCCCc--cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-
Q 000454 340 GSVYQLLSSS-DDG----TCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS- 411 (1491)
Q Consensus 340 ~s~~~LaSgS-~DG----tVrIWDl~tg~~--~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs- 411 (1491)
+ .|+..+ .+| .+.+|++..+.. ...+. ..........+|+|||+.|+..+
T Consensus 243 ~---~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------------------~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 243 K---LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------------------NEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred C---EEEEEECCCCCcceeEEEeecccCCCCcceEee-------------------cCCCCCcCCeEECCCCCEEEEEEC
Confidence 7 555443 223 344466654321 11110 01112235679999999877665
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC-C
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-D 490 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-D 490 (1491)
.+|...||.+.... .......+..+...+....|+|++ +.|+..+. +
T Consensus 301 ~~g~~~ly~~~~~~------~g~~~~~lt~~~~~~~~p~wSPDG--------------------------~~Laf~~~~~ 348 (428)
T PRK01029 301 KDGRPRIYIMQIDP------EGQSPRLLTKKYRNSSCPAWSPDG--------------------------KKIAFCSVIK 348 (428)
T ss_pred CCCCceEEEEECcc------cccceEEeccCCCCccceeECCCC--------------------------CEEEEEEcCC
Confidence 46655555442100 011233344455567788999987 45554433 2
Q ss_pred --CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec---cceEE
Q 000454 491 --GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---DCRIC 565 (1491)
Q Consensus 491 --GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~---DG~Ir 565 (1491)
..|.+||+.+++. ..+......+....|+|||++|+.... ...|+
T Consensus 349 g~~~I~v~dl~~g~~------------------------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 349 GVRQICVYDLATGRD------------------------------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred CCcEEEEEECCCCCe------------------------------EEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 3688888876431 111112224566899999998876443 35799
Q ss_pred EEECCCCceEEEEeCCCCCeEEEEEecC
Q 000454 566 VWNAADGSLVHSLTGHTESTYVLDVHPF 593 (1491)
Q Consensus 566 IWDl~tgkll~tL~gHs~~VtsLafSPd 593 (1491)
+||+.+++...... ..+.+...+|+|.
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCC
Confidence 99998877554443 4455677888874
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=4.2e-09 Score=123.46 Aligned_cols=174 Identities=18% Similarity=0.257 Sum_probs=135.1
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-------TAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~-------Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
+..+.||+..|.+++--.+.+-+++++.|.+|++|.+. |..+..++..|..+|.++.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45678999999999988888899999999999999985 335788899999999999999999888875 788
Q ss_pred EEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.+||.--|+++.... ...+.+..+...++-.....++-++...+|+++|.+.+.....+.+-.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-------------- 871 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-------------- 871 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc--------------
Confidence 9999988787766432 122344444444442222234445788999999999988777664321
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT 426 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~ 426 (1491)
..+....+.+++..+.|++++++-..|.|.+.|.+++..
T Consensus 872 -a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 872 -APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred -CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 123456789999999999999999999999999988643
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=1.3e-07 Score=114.46 Aligned_cols=293 Identities=13% Similarity=0.149 Sum_probs=196.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC---------------ceeeeccCCCceEEEEecCCCCceEEEEEE
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL---------------PISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk---------------~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg 348 (1491)
......|++|+....+||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|..... .|-+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q---KLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ---KLTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc---ccccc
Confidence 34567899999999999999999999999876531 1246789999999999999876 89999
Q ss_pred eCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCC
Q 000454 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1491)
Q Consensus 349 S~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~ 428 (1491)
..+|.|.+|-+-.+........ ......|.+++|+.||..|+....||.|.|=.+......
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiN------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw- 150 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMIN------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW- 150 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhh------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-
Confidence 9999999999988776554422 224567899999999999999999999877666432111
Q ss_pred CCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccc
Q 000454 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 508 (1491)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~ 508 (1491)
++. +. ......+.|+++. ..++.+-..|.+.++|....
T Consensus 151 ----gKe---Lk--g~~l~hv~ws~D~--------------------------~~~Lf~~ange~hlydnqgn------- 188 (1189)
T KOG2041|consen 151 ----GKE---LK--GQLLAHVLWSEDL--------------------------EQALFKKANGETHLYDNQGN------- 188 (1189)
T ss_pred ----chh---cc--hheccceeecccH--------------------------HHHHhhhcCCcEEEeccccc-------
Confidence 111 11 1123467888874 34455556688888886631
Q ss_pred ccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE--------cCCCCEEEEEeccceEEEEECCCCceEEEEeC
Q 000454 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW--------SLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580 (1491)
Q Consensus 509 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf--------SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g 580 (1491)
+...+........ ...+......|..+.| -||-..|+++-.+|.+.|..-.+......+..
T Consensus 189 -F~~Kl~~~c~Vn~----------tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 189 -FERKLEKDCEVNG----------TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred -HHHhhhhceEEee----------eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 1111110000000 0000001111222333 35778899999999988876544332222221
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 000454 581 HTESTYVLDVHPFNPRIAMSAGYD---------GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651 (1491)
Q Consensus 581 Hs~~VtsLafSPdd~~lLaSgS~D---------GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~I 651 (1491)
.-.|..+.|++ ++.+|+.+|.+ +.|.+|.. -|..+.+++.....|+.++|-..|-.+|.+- |+.|++
T Consensus 258 -gm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyf 333 (1189)
T KOG2041|consen 258 -GMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYF 333 (1189)
T ss_pred -ccEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEE
Confidence 24578889999 77788888754 35666665 6888899998888999999998888887765 477877
Q ss_pred EECC
Q 000454 652 LNTG 655 (1491)
Q Consensus 652 Wdl~ 655 (1491)
=++.
T Consensus 334 anIR 337 (1189)
T KOG2041|consen 334 ANIR 337 (1189)
T ss_pred Eeec
Confidence 6664
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.91 E-value=1.6e-06 Score=103.42 Aligned_cols=274 Identities=9% Similarity=0.022 Sum_probs=164.5
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeEEEEEecC-------CCCeEEEE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSD----------DRLVKIWSMETAYCLASCRGH-------EGDITDLA 292 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~----------DGtIrIWDl~Tg~~l~tL~gH-------~~~VtsLa 292 (1491)
..+++.+.++..-..+-. + ++|||+.|..+.. +..|.|||+.+++.+..+.-. ......++
T Consensus 34 ~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 34 GEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEE
Confidence 345666777764333332 4 9999998877654 789999999999999988742 22334789
Q ss_pred EcCCCCEEEEEE-C-CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeec
Q 000454 293 VSSNNALVASAS-N-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 293 fSPDG~lLASGS-~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
++|||++|+... . +..|-|.|+.+++.+..+... +...-+..+... +.+-+.||......+...........
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~-----~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDT-----FFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCc-----cEEEeecCceEEEEecCCCceEEeee
Confidence 999999988765 3 689999999999988877642 222222232221 22333444444433322111111000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEE
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV 449 (1491)
+ ...+.. ... ...+ .|.+ +|+++.+... |.|.+.|+..... ..
T Consensus 186 ~----vf~~~~----~~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~----------~~----------- 229 (352)
T TIGR02658 186 E----VFHPED----EYL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDA----------KF----------- 229 (352)
T ss_pred e----eecCCc----ccc--ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcc----------ee-----------
Confidence 0 000000 000 0111 3345 7887777766 8899888743110 00
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
...|.+-+.. .....|
T Consensus 230 -------------------------------------------~~~~~~~~~~--~~~~~w------------------- 245 (352)
T TIGR02658 230 -------------------------------------------LPAIEAFTEA--EKADGW------------------- 245 (352)
T ss_pred -------------------------------------------cceeeecccc--cccccc-------------------
Confidence 0011100000 000000
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEe----------ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCC-cEE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAI----------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP-RIA 598 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----------~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~-~lL 598 (1491)
....+.-++++++|+.++++. ..+.|.++|..+++.+..+.. ...+..|+++|++. .++
T Consensus 246 ---------rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 246 ---------RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLY 315 (352)
T ss_pred ---------CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEE
Confidence 122334488999999888853 124799999999999998863 34688999999666 444
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE
Q 000454 599 MSAGYDGKTIVWDIWEGIPIRIY 621 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~tGk~l~~l 621 (1491)
++...++.|.|.|+.+++.++.+
T Consensus 316 vtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 316 ALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EeCCCCCcEEEEECcCCeEEeee
Confidence 45557899999999999999998
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.90 E-value=5.6e-08 Score=110.34 Aligned_cols=309 Identities=13% Similarity=0.230 Sum_probs=185.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~----Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
..+++++.+.+..+.|+.|-..|+|.-+.+. ....++.+..|...|..+.|+-...++++.+.|..+.--..+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 4679999999999999999999999988764 345566667899999999999999999999999876655666655
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
.+..+.- ....+++.|.- .+...|...|.|..-.+....+.. .....+|...+.++
T Consensus 148 ~lg~Y~~-~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~~~~~~~~------------------i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 148 RLGGYNF-ETPASALQFDA-----LYAFVGDHSGQITMLKLEQNGCQL------------------ITTFNGHTGEVTCL 203 (404)
T ss_pred cccceEe-eccCCCCceee-----EEEEecccccceEEEEEeecCCce------------------EEEEcCcccceEEE
Confidence 4432210 00011111110 023334444555444333222111 12235688999999
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+|.+...+|.+|..|..|.+||+... ......+.+|.+.|..+...+..
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t----------------------- 252 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT----------------------- 252 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-----------------------
Confidence 99999999999999999999999532 33566788999999888776543
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCC------CCCCCceec-cCCCCCeeEEEEcCC
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQP------PRGGPRQRI-LPTPRGVNMIVWSLD 551 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~l-~~h~~~VtsVafSPD 551 (1491)
..+++++.||.|.+|+++..+. ....|.......-...+..... ...+..+.. ..-...|...+-+..
T Consensus 253 ---~~l~S~~edg~i~~w~mn~~r~--etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~ 327 (404)
T KOG1409|consen 253 ---RQLISCGEDGGIVVWNMNVKRV--ETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNR 327 (404)
T ss_pred ---eeeeeccCCCeEEEEeccceee--cCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCc
Confidence 5899999999999999986442 2233332221111111110000 000000000 001112222222222
Q ss_pred CCEEEEEeccceEEEEECC-------CCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 552 NRFVLAAIMDCRICVWNAA-------DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~-------tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
..+ .+-+..-.+++.|.. +..++..+..-...|+.+.+-. .-.+|+|+|.|..|+|||+.
T Consensus 328 ~~~-p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 328 SSY-PTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred ccc-ccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEech
Confidence 112 222223344444431 1223444332233578887766 44677899999999999985
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.88 E-value=7.8e-08 Score=115.98 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=132.1
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee--cCCCCCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL--SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l--~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
+-..++-|...|.|.+|++..++ ....+ ..|.+.|.++.++...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~---------it~~~st~~h~~~v~~~~~~~~~------------------------- 114 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGE---------ITAKLSTDKHYGNVNEILDAQRL------------------------- 114 (541)
T ss_pred CceEEEeecCCccEEEEEecCCe---------EEEEEecCCCCCcceeeeccccc-------------------------
Confidence 45578888899999999997532 22233 4789999999988653
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
..|.+++.|+.+..|++...+. ..........+.+++++|||..+++|+
T Consensus 115 -~ciyS~~ad~~v~~~~~~~~~~-----------------------------~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 115 -GCIYSVGADLKVVYILEKEKVI-----------------------------IRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred -CceEecCCceeEEEEeccccee-----------------------------eeeeccCCCccceEEEcCCCCEEEecc-
Confidence 4799999999999999886431 222334455688899999999999886
Q ss_pred cceEEEEECCCCceEEEEeCCCCCeEEEEEecC-----CCcEEEEEeCCCcEEEEeCCC----CceEEEEeeCCcceEEE
Q 000454 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPF-----NPRIAMSAGYDGKTIVWDIWE----GIPIRIYEISRFRLVDG 631 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPd-----d~~lLaSgS~DGtIrIWDl~t----Gk~l~~l~~h~~~Vtsl 631 (1491)
+.|++||+.+++.+.+|.||.++|.++.|.-. +.++|.++..+..|.+|-+.. +.....+...+-+|+.=
T Consensus 164 -~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~d 242 (541)
T KOG4547|consen 164 -RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSD 242 (541)
T ss_pred -ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEec
Confidence 57999999999999999999999999999875 456776777777888897654 23444555444455432
Q ss_pred EE-cCCCC--E-EEEEeCCCcEEEEE
Q 000454 632 KF-SPDGA--S-IILSDDVGQLYILN 653 (1491)
Q Consensus 632 af-SPDG~--~-LAsgs~DG~I~IWd 653 (1491)
.+ ..|+. + ||+....|.+.++.
T Consensus 243 s~~~ed~~~~l~lAst~~~g~v~~~~ 268 (541)
T KOG4547|consen 243 SGLLEDGTIPLVLASTLIPGIVHLKL 268 (541)
T ss_pred cccccccccceEEeeeccCceeeecc
Confidence 22 33444 3 33444455555444
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.87 E-value=6.8e-08 Score=116.49 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=139.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---CCCCeEEEEE--------------------cCCCCEEEEEECCCe
Q 000454 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAV--------------------SSNNALVASASNDCI 308 (1491)
Q Consensus 252 SpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g---H~~~VtsLaf--------------------SPDG~lLASGS~DGt 308 (1491)
.|-+.++|....||.++||++.++++...+.. -.+..++..| +.|-..||-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999999988776652 2344455555 223447888888999
Q ss_pred EEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.+|++..|+....+. .|.+.|.++.++.+-. .|.+++.|+.|..|+...........
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciyS~~ad~~v~~~~~~~~~~~~~~~----------------- 141 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIYSVGADLKVVYILEKEKVIIRIWK----------------- 141 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceEecCCceeEEEEecccceeeeeec-----------------
Confidence 9999999998887776 6899999999999876 89999999999999998887665543
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.....+.+++++|||..+++++ +.|.+|++.+ .+.+..+.+|.+.|.++.|.-.
T Consensus 142 ---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 142 ---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEe
Confidence 2455688999999999999886 6799999976 6788999999999999999754
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=2.7e-08 Score=120.79 Aligned_cols=288 Identities=19% Similarity=0.216 Sum_probs=188.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEe-cCCCCeEEEEEcCCCC---EEEEEECCCeEEEEECCCC
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCLASCR-GHEGDITDLAVSSNNA---LVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T-g~~l~tL~-gH~~~VtsLafSPDG~---lLASGS~DGtIrVWDl~tg 317 (1491)
.+++.++.++|.|+-+|.++.-|. .|-|+.. +....-+. -..-.|-++.|+|... ++++. ....-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST-SNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec-CcchhhhhhhhcC
Confidence 467899999999999999998874 4556543 33333332 1133577788888543 44444 4456789998643
Q ss_pred ---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 318 ---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 318 ---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
..-..+.+|+..|+.+.|.|... ..|++++.|-.|..||++........ .......
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~p--dVlatcsvdt~vh~wd~rSp~~p~ys-------------------~~~w~s~ 160 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHP--DVLATCSVDTYVHAWDMRSPHRPFYS-------------------TSSWRSA 160 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCC--cceeeccccccceeeeccCCCcceee-------------------eeccccc
Confidence 33456779999999999999865 48999999999999999876532221 1112334
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
...+.|+-....+.+.+....|.+||++.+ ..++..+++|...|+.+.|..--
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~------------------- 213 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFK------------------- 213 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhh-------------------
Confidence 566788775445555566778999999875 34677888899899888887432
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR- 553 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~- 553 (1491)
...+.+++.||+|+.||....... |. .......+|..-.+-|-|.
T Consensus 214 ------~s~~~s~~~d~tvkfw~y~kSt~e-----~~-----------------------~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 214 ------YSEIMSSSNDGTVKFWDYSKSTTE-----SK-----------------------RTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ------hhhhcccCCCCceeeecccccccc-----cc-----------------------eeccccCcceeccccccCce
Confidence 357899999999999998753211 11 1111222233333333222
Q ss_pred ----------EEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEeCC
Q 000454 554 ----------FVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF---------NPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 554 ----------~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPd---------d~~lLaSgS~DGtIrIWDl~ 613 (1491)
.+..---+.....|+..+ .+++++|.||.+.|....|-.. ....|+|-+.|..+++|-+.
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 111111222334455544 4789999999998876666321 12478899999999999875
Q ss_pred C
Q 000454 614 E 614 (1491)
Q Consensus 614 t 614 (1491)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 3
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=7.8e-06 Score=96.10 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=117.5
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeeCCcceE
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIVWDIWEGIPIRIYEISRFRLV 629 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG-tIrIWDl~tGk~l~~l~~h~~~Vt 629 (1491)
+|.+++..+ -|...|.+.-.+-.++. +|.+.|.-..+..+ +.-++.|..|| .|-|+|..+++ +..+...-+.|.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCce-EEEeeCCccceE
Confidence 577777765 45677776655544443 57777877777763 44666788898 99999996665 445555778999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcc------cccccceeeecCCCcceEEc-cCCCEEEccccccCccccCCCcc
Q 000454 630 DGKFSPDGASIILSDDVGQLYILNTGQGES------QKDAKYDQFFLGDYRPLVQD-TYGNVLDQETQLAPHRRNLQDPL 702 (1491)
Q Consensus 630 slafSPDG~~LAsgs~DG~I~IWdl~tG~~------~~~~~~~~~fs~D~r~La~d-~~G~vLde~tq~~p~Lw~l~~~l 702 (1491)
+++.+|||++++++.....|++.|+.+|.. ...+..+..|+++.++++.. +.|.+. +..++.++..+.
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t-----q~Iklydm~~~K 480 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT-----QSIKLYDMDGGK 480 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee-----eeEEEEecCCCe
Confidence 999999999999999999999999999975 23556778999999999876 444442 334566654432
Q ss_pred c-cccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEe
Q 000454 703 C-DSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVG 740 (1491)
Q Consensus 703 ~-d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg 740 (1491)
. +++ .|..- -.+-+|.|||++|---
T Consensus 481 iy~vT-T~ta~------------DfsPaFD~d~ryLYfL 506 (668)
T COG4946 481 IYDVT-TPTAY------------DFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEec-CCccc------------ccCcccCCCCcEEEEE
Confidence 2 222 12211 1236899999998754
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.82 E-value=2.5e-06 Score=103.57 Aligned_cols=267 Identities=15% Similarity=0.108 Sum_probs=159.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceE--
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT-- 331 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vt-- 331 (1491)
++..++.++.+|.|..||..+|+.+...... ..+.+.-.. .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4677888889999999999999998776532 222221111 345677778899999999999998877654322111
Q ss_pred ---EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce-EEEEECCCCCEE
Q 000454 332 ---AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI-FCCAFNANGTVF 407 (1491)
Q Consensus 332 ---sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V-~slafSPDG~~L 407 (1491)
+..+. + . .++.+..+|.|..+|+.+++.........+. +... . .....+ ....+ .+..+
T Consensus 182 ~~~sp~~~-~-~---~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~----g~~~--~----~~~~~~~~~p~~--~~~~v 244 (377)
T TIGR03300 182 GSASPVIA-D-G---GVLVGFAGGKLVALDLQTGQPLWEQRVALPK----GRTE--L----ERLVDVDGDPVV--DGGQV 244 (377)
T ss_pred CCCCCEEE-C-C---EEEEECCCCEEEEEEccCCCEeeeeccccCC----CCCc--h----hhhhccCCccEE--ECCEE
Confidence 11111 2 2 5778888899999999998765443211100 0000 0 000000 00111 24567
Q ss_pred EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE
Q 000454 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg 487 (1491)
++++.+|.++.||..+++ .+-... . ....... ..++.++.+
T Consensus 245 y~~~~~g~l~a~d~~tG~---------~~W~~~-~-~~~~~p~----------------------------~~~~~vyv~ 285 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGR---------VLWKRD-A-SSYQGPA----------------------------VDDNRLYVT 285 (377)
T ss_pred EEEEcCCEEEEEECCCCc---------EEEeec-c-CCccCce----------------------------EeCCEEEEE
Confidence 778889999999997642 111111 0 0000111 113578888
Q ss_pred eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEE
Q 000454 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567 (1491)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIW 567 (1491)
+.+|.+..+|..+++.. |.... + .......... .+..|++++.+|.|++|
T Consensus 286 ~~~G~l~~~d~~tG~~~-----W~~~~---------------------~--~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 286 DADGVVVALDRRSGSEL-----WKNDE---------------------L--KYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCCCeEEEEECCCCcEE-----Ecccc---------------------c--cCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 89999999999875521 22100 0 0001111122 35688899999999999
Q ss_pred ECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 568 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 568 Dl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
|..+|+.+..+..+...+..--... +++ |+.++.||.|..|
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCCceEEEe
Confidence 9999999999887665433322222 344 5568889988775
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.80 E-value=2.2e-08 Score=130.89 Aligned_cols=226 Identities=12% Similarity=0.216 Sum_probs=168.8
Q ss_pred CCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
++.+.....++...-|..+-+.. .++.+-..|.++.-+|... +.++|+.||.|++|....++.+..+..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt------ 2248 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRT------ 2248 (2439)
T ss_pred cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeec------
Confidence 34444445555556565433222 2333556788888888766 889999999999999988876655532
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
.....|+.+.|+.+|+.+..+..||.+.+|.+. .++......|......+.|-..
T Consensus 2249 -------------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----------pk~~~s~qchnk~~~Df~Fi~s-- 2303 (2439)
T KOG1064|consen 2249 -------------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----------PKPYTSWQCHNKALSDFRFIGS-- 2303 (2439)
T ss_pred -------------cCcchhhhhhhcccCCceeeeccCCceeecccC----------CcceeccccCCccccceeeeeh--
Confidence 123779999999999999999999999999985 3456667778888888887653
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEE---eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg---S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
.++++ +.++.+.+||..-.. ....+
T Consensus 2304 --------------------------~~~tag~s~d~~n~~lwDtl~~~--------------------------~~s~v 2331 (2439)
T KOG1064|consen 2304 --------------------------LLATAGRSSDNRNVCLWDTLLPP--------------------------MNSLV 2331 (2439)
T ss_pred --------------------------hhhccccCCCCCcccchhcccCc--------------------------cccee
Confidence 34443 357889999865311 01111
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
. ..|..+++++++-|..+.|++|+.+|.|+|||++..++++++.. ++ ...++++|+..|.|+||++.
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEcc
Confidence 1 67889999999999999999999999999999999888887764 32 35688899999999999998
Q ss_pred CCceEEEEee
Q 000454 614 EGIPIRIYEI 623 (1491)
Q Consensus 614 tGk~l~~l~~ 623 (1491)
....+.++..
T Consensus 2399 ~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2399 EFGLLHTFPS 2408 (2439)
T ss_pred ccchhhcCch
Confidence 8888877763
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.78 E-value=5.4e-07 Score=100.87 Aligned_cols=277 Identities=15% Similarity=0.140 Sum_probs=177.9
Q ss_pred CCeEEEEECCCCCcee--ee-ccCCCceEEEEecCC--CCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 306 DCIIRVWRLPDGLPIS--VL-RGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~--~L-~gHs~~VtsLaFSPd--g~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
-|.+.+|++...+.+. .+ ..-+..+..+.|+-. +.. ..|+-+...|.|.++..........+.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~----------- 112 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLR----------- 112 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeec-----------
Confidence 4678888887665443 11 223456777777643 222 367778888999998765433222221
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
+.....-......++.|++.|..++++..+|.+.+-+.... ....+..++.|.-.+....|+-..
T Consensus 113 ---~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------~le~vq~wk~He~E~Wta~f~~~~----- 177 (339)
T KOG0280|consen 113 ---GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-------VLEKVQTWKVHEFEAWTAKFSDKE----- 177 (339)
T ss_pred ---ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-------eeeecccccccceeeeeeecccCC-----
Confidence 00000111114678899999999999999999985554321 133445678888888887776432
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
++.+.+|+.||.+..||++..+ ...| .....|.
T Consensus 178 --------------------pnlvytGgDD~~l~~~D~R~p~----~~i~-----------------------~n~kvH~ 210 (339)
T KOG0280|consen 178 --------------------PNLVYTGGDDGSLSCWDIRIPK----TFIW-----------------------HNSKVHT 210 (339)
T ss_pred --------------------CceEEecCCCceEEEEEecCCc----ceee-----------------------ecceeee
Confidence 4689999999999999998422 1111 1234577
Q ss_pred CCeeEEEEcC-CCCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCc-
Q 000454 541 RGVNMIVWSL-DNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWEGI- 616 (1491)
Q Consensus 541 ~~VtsVafSP-DG~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~-lLaSgS~DGtIrIWDl~tGk- 616 (1491)
.+|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.... +|+++-+. -.+|-++..+.
T Consensus 211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVL 288 (339)
T ss_pred cceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEeccccc
Confidence 8898888776 577999999999999999984 66665433 3478999999996553 44444444 46777776542
Q ss_pred ----eEEEEeeCCcceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCCc
Q 000454 617 ----PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLY-ILNTGQGE 658 (1491)
Q Consensus 617 ----~l~~l~~h~~~VtslafSPDG~~LAsgs-~DG~I~-IWdl~tG~ 658 (1491)
.+.....|..-++...|.....+||+++ .|..++ +|-..+++
T Consensus 289 e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 289 EFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred chheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 3344455555566666644445677753 466644 77766654
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=6.6e-08 Score=126.60 Aligned_cols=192 Identities=15% Similarity=0.257 Sum_probs=154.1
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
++.|-..|.|+.-+|.-.+.+||+.||.|++|....+..+..++ +....|+.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 44566789999999999999999999999999999998888776 234889999999999999999999999999975 7
Q ss_pred CceeeeccCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 318 k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS---~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
++....+.|......+.|... .+++++ .++.+.+||.--......+ ...|.+.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~~~~~s~v-------------------~~~H~~g 2338 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLLPPMNSLV-------------------HTCHDGG 2338 (2439)
T ss_pred cceeccccCCccccceeeeeh-----hhhccccCCCCCcccchhcccCccccee-------------------eeecCCC
Confidence 778888899999999999873 566664 5688999996433221111 1458889
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
++++++-|...+|++|+.+|.|++||++.. +.+..+.. +.
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~---------------------- 2378 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD---------------------- 2378 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh----------------------
Confidence 999999999999999999999999999642 22222221 11
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCC
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
...+|++|+..|.|+||++..
T Consensus 2379 -----~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2379 -----TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred -----hhheeeccCcccceEEEEccc
Confidence 135899999999999999885
No 278
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=9.2e-06 Score=99.43 Aligned_cols=309 Identities=13% Similarity=0.067 Sum_probs=181.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCC-C---------Ce-EEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE-G---------DI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~-~---------~V-tsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
+..|++++.+|.|.-+|..+|+.+....-.. . .+ ..++. ++..|+.++.+|.|..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 5577777788899999999998887654221 0 00 01111 3556777888999999999999998877
Q ss_pred ccCCCceEE-EEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC
Q 000454 324 RGHTAAVTA-IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 324 ~gHs~~Vts-LaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP 402 (1491)
.... .+.+ .... ++ .++.+..+|.|..+|..+|+.+.......+... ......++ .
T Consensus 147 ~~~~-~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----------~~~~~sP~----v-- 203 (394)
T PRK11138 147 KVAG-EALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT-----------LRGESAPA----T-- 203 (394)
T ss_pred cCCC-ceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCccc-----------ccCCCCCE----E--
Confidence 6432 2222 1222 22 577788899999999999987766643211000 00001111 1
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC-CC-CCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG-HE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g-H~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
.+..++.++.+|.+..+|..+++..-... +....+ +. .....+..+| ...
T Consensus 204 ~~~~v~~~~~~g~v~a~d~~~G~~~W~~~----~~~~~~~~~~~~~~~~~~sP------------------------~v~ 255 (394)
T PRK11138 204 AFGGAIVGGDNGRVSAVLMEQGQLIWQQR----ISQPTGATEIDRLVDVDTTP------------------------VVV 255 (394)
T ss_pred ECCEEEEEcCCCEEEEEEccCChhhheec----cccCCCccchhcccccCCCc------------------------EEE
Confidence 12346667778888888886643210000 000000 00 0000000011 111
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
++.++.++.+|.+..+|+.+++. .|...+. . ...++ ..+..|++++.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~-----~W~~~~~-----------------------~---~~~~~--~~~~~vy~~~~ 302 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI-----VWKREYG-----------------------S---VNDFA--VDGGRIYLVDQ 302 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE-----EEeecCC-----------------------C---ccCcE--EECCEEEEEcC
Confidence 35677788899999999987652 2322110 0 00111 24567777888
Q ss_pred cceEEEEECCCCceEEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEE-EEEcCCCC
Q 000454 561 DCRICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD-GKFSPDGA 638 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gHs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vts-lafSPDG~ 638 (1491)
+|.|+.+|..+|+.+.....-.. ......+. ++ .|+.++.||.|.+.|..+|+.+..+......+.. ..+ .+.
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~ 377 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADD 377 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECC
Confidence 99999999999987664432111 12222222 33 4556889999999999999999888754333332 122 345
Q ss_pred EEEEEeCCCcEEEEEC
Q 000454 639 SIILSDDVGQLYILNT 654 (1491)
Q Consensus 639 ~LAsgs~DG~I~IWdl 654 (1491)
.|++++.+|.|+.++.
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 7888999999998874
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=4.9e-06 Score=112.84 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=82.4
Q ss_pred eeEEEEcCCCCEEE-EEeccceEEEEECCCCceEEEEeC-------------C--------CCCeEEEEEecCCCcEEEE
Q 000454 543 VNMIVWSLDNRFVL-AAIMDCRICVWNAADGSLVHSLTG-------------H--------TESTYVLDVHPFNPRIAMS 600 (1491)
Q Consensus 543 VtsVafSPDG~~La-SGs~DG~IrIWDl~tgkll~tL~g-------------H--------s~~VtsLafSPdd~~lLaS 600 (1491)
...|+|+|+|.+|+ +-..++.|++||+.++.......+ + -.....|+|++ ++.++++
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVA 820 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEE
Confidence 56689999988554 445668899999887653211100 0 01235788998 5567778
Q ss_pred EeCCCcEEEEeCCCCceEEEEeeC-------------CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 601 AGYDGKTIVWDIWEGIPIRIYEIS-------------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 601 gS~DGtIrIWDl~tGk~l~~l~~h-------------~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
-..++.|++||..++........+ -.....|+++++|+++++-+.++.|++|++.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 888999999999887665433211 11456899999999888888899999999988754
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=1.4e-07 Score=114.74 Aligned_cols=233 Identities=23% Similarity=0.356 Sum_probs=159.4
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC--
Q 000454 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-- 404 (1491)
Q Consensus 327 s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-- 404 (1491)
.+.+.++..+|.+. -++.++.-| +.+.|+...-...+... ......|-.+.|+|..
T Consensus 24 ~~~~~a~si~p~gr---di~lAsr~g-l~i~dld~p~~ppr~l~------------------h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGR---DIVLASRQG-LYIIDLDDPFTPPRWLH------------------HITPWQVADVQWSPHPAK 81 (1081)
T ss_pred cCcccceeeccccc---hhhhhhhcC-eEEEeccCCCCCceeee------------------ccCcchhcceecccCCCC
Confidence 45678889999887 567777666 56667654432222211 1123345566676643
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
.+-++........+|++.... ....-..+-+|...|+.+.|.|.. ++.+
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss------~~aIef~lhghsraitd~n~~~q~-------------------------pdVl 130 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSS------SNAIEFVLHGHSRAITDINFNPQH-------------------------PDVL 130 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCC------ccceEEEEecCccceeccccCCCC-------------------------Ccce
Confidence 234444445555689886532 233445678999999999999864 5789
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceE
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1491)
++++.|-.+..||+++... +......-......|+|+.....+.+.+....|
T Consensus 131 atcsvdt~vh~wd~rSp~~----------------------------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHR----------------------------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred eeccccccceeeeccCCCc----------------------------ceeeeecccccCceeeecccCcchhhhccCCce
Confidence 9999999999999997431 111112222345668898876677777788889
Q ss_pred EEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE-EEEeeCCcceEEEEEcCCCCEE
Q 000454 565 CVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI-RIYEISRFRLVDGKFSPDGASI 640 (1491)
Q Consensus 565 rIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l-~~l~~h~~~VtslafSPDG~~L 640 (1491)
.|||.+.| .++..+++|...|+.++|...-...+++++.||+|++||....... ........+|+...|-|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 99999765 6788999999999999998766677889999999999998754322 2222356688888888866533
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.68 E-value=2.3e-06 Score=95.92 Aligned_cols=271 Identities=16% Similarity=0.129 Sum_probs=175.0
Q ss_pred CCCeEEEEECCCCeEEE--EE-ecCCCCeEEEEEcC---CCC-EEEEEECCCeEEEEECCCCCceeeeccCC------Cc
Q 000454 263 DDRLVKIWSMETAYCLA--SC-RGHEGDITDLAVSS---NNA-LVASASNDCIIRVWRLPDGLPISVLRGHT------AA 329 (1491)
Q Consensus 263 ~DGtIrIWDl~Tg~~l~--tL-~gH~~~VtsLafSP---DG~-lLASGS~DGtIrVWDl~tgk~i~~L~gHs------~~ 329 (1491)
.-|.+.++++...+... ++ ......+..|.|.- +|. .|+-+...|.|.++..........|.+-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678899887665543 11 22345677777764 455 56667778999999865444333333221 12
Q ss_pred eEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEE
Q 000454 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFV 408 (1491)
Q Consensus 330 VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~La 408 (1491)
..++.|++.+. .++++..+|.+.+-+........ ......|...++.+.|+- +.+++.
T Consensus 124 ~lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le~------------------vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 124 ALSLDISTSGT---KIFVSDSRGSISGVYETEMVLEK------------------VQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred eeEEEeeccCc---eEEEEcCCCcEEEEecceeeeee------------------cccccccceeeeeeecccCCCceEE
Confidence 45778888877 78899899998855544332211 123356888889999976 447899
Q ss_pred EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
+|+.|+.+..||++.++ ........-|...|.+|.-+|.- +.++++|+
T Consensus 183 tGgDD~~l~~~D~R~p~-------~~i~~n~kvH~~GV~SI~ss~~~-------------------------~~~I~TGs 230 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPK-------TFIWHNSKVHTSGVVSIYSSPPK-------------------------PTYIATGS 230 (339)
T ss_pred ecCCCceEEEEEecCCc-------ceeeecceeeecceEEEecCCCC-------------------------CceEEEec
Confidence 99999999999998432 12233356788899999887642 46899999
Q ss_pred CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccceEEEE
Q 000454 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVW 567 (1491)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~IrIW 567 (1491)
.|-.|++||.++-. .++.. ....++|..+.++|.-. .|+.+++-.-.+|.
T Consensus 231 YDe~i~~~DtRnm~----------------------------kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 231 YDECIRVLDTRNMG----------------------------KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred cccceeeeehhccc----------------------------Ccccc-CccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 99999999998521 01100 11237899999998533 23344455556777
Q ss_pred ECCCCc-----eEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEE-EEeCCCCc
Q 000454 568 NAADGS-----LVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTI-VWDIWEGI 616 (1491)
Q Consensus 568 Dl~tgk-----ll~tL~gHs~~VtsLafSPdd~~lLaSgS-~DGtIr-IWDl~tGk 616 (1491)
+...+. .....+.|.+-++.-.|.. -..+|+||+ +|..|+ +|-.-++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 765532 2344567777777777744 235677765 677755 77654543
No 282
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=3.9e-08 Score=120.91 Aligned_cols=201 Identities=18% Similarity=0.284 Sum_probs=139.1
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.....+....+|++|+.+.++|++|+..|.|++|++.++ ........|...|+.|.-+.+|.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---------~~e~s~ncH~SavT~vePs~dgs--------- 1156 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---------SMEESVNCHQSAVTLVEPSVDGS--------- 1156 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---------cccccccccccccccccccCCcc---------
Confidence 344567788999999999999999999999999999874 34556678999999998887761
Q ss_pred CCCCCCccccccccCCCeEEEEeCCC-eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DG-tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
.+|.+.+... -..+|++.+. +++...+ ..-.
T Consensus 1157 ----------------~~Ltsss~S~PlsaLW~~~s~----------------------------~~~~Hsf----~ed~ 1188 (1516)
T KOG1832|consen 1157 ----------------TQLTSSSSSSPLSALWDASST----------------------------GGPRHSF----DEDK 1188 (1516)
T ss_pred ----------------eeeeeccccCchHHHhccccc----------------------------cCccccc----cccc
Confidence 1333333332 4567876641 1111111 2235
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~g---Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~ 620 (1491)
++.|+..-.+-+.|+......|||+.++..+.++ .+ ..-.-+++.|+|.+..+| .|| .+||+...+.++.
T Consensus 1189 ~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1189 AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----eCc--eeeeeccHHHHhh
Confidence 6778776666666766678999999999887763 22 122236788999554444 465 5799998888887
Q ss_pred EeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccccc
Q 000454 621 YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1491)
Q Consensus 621 l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~ 664 (1491)
|..... -..-.|+|.|.-++.-+. |||+.+-+.+...+
T Consensus 1263 FD~ft~-~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1263 FDQFTD-YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred hhhhee-cccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 764431 224579999999998775 89998887766554
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.64 E-value=1.2e-05 Score=109.01 Aligned_cols=275 Identities=12% Similarity=0.076 Sum_probs=158.5
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEec--C------------CCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 000454 248 CAIFDRS-GRYVITGSDDRLVKIWSMETAYCLASCRG--H------------EGDITDLAVSSNNALVASAS-NDCIIRV 311 (1491)
Q Consensus 248 ~VaFSpD-G~~LATGS~DGtIrIWDl~Tg~~l~tL~g--H------------~~~VtsLafSPDG~lLASGS-~DGtIrV 311 (1491)
.++++++ |.++++-+..+.|.+||.. |..+..+.+ . -.....|+|.++++.|+.+. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5888874 6677777888999999986 554444432 1 12357899999888665554 4578999
Q ss_pred EECCCCCceeeeccC-----------------CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 312 WRLPDGLPISVLRGH-----------------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 312 WDl~tgk~i~~L~gH-----------------s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
+|+.++. +.++.+- -..-+.|+|+|++. .++++...++.|++||..++... .+.-....
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9987654 3333210 11236799999544 26677778899999998876532 11100000
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCC--CCC--CceeeeecCC-------
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDS--DQP--NHEIDVLSGH------- 442 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s--~~~--~~~i~~l~gH------- 442 (1491)
....+ .............|+|+|+|. ++++-+.++.|++||+.++..... ..+ ......+..+
T Consensus 727 ~~~~g-----~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 727 RNLNG-----SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccCCC-----CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 00000 000011224567899999998 455566679999999875321000 000 0000000000
Q ss_pred -CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 443 -ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 443 -~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
-..-..++++++ +..+++-+.++.|++||..++........
T Consensus 802 ~l~~P~Gvavd~d--------------------------G~LYVADs~N~rIrviD~~tg~v~tiaG~------------ 843 (1057)
T PLN02919 802 LLQHPLGVLCAKD--------------------------GQIYVADSYNHKIKKLDPATKRVTTLAGT------------ 843 (1057)
T ss_pred hccCCceeeEeCC--------------------------CcEEEEECCCCEEEEEECCCCeEEEEecc------------
Confidence 001124444443 35788888899999999886432111000
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl 574 (1491)
.... ...+. .....-.....|+++++|+++++-+.++.|++||+.+++.
T Consensus 844 G~~G-~~dG~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 844 GKAG-FKDGK---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcC-CCCCc---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 0000 00000 0112223567899999999988888999999999998865
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=1.3e-05 Score=98.82 Aligned_cols=201 Identities=9% Similarity=0.024 Sum_probs=121.7
Q ss_pred CeeEEEEcCCCCE-EEEEec---cceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCC
Q 000454 542 GVNMIVWSLDNRF-VLAAIM---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDIWEG 615 (1491)
Q Consensus 542 ~VtsVafSPDG~~-LaSGs~---DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D--GtIrIWDl~tG 615 (1491)
.+....|+|||+. ++..+. ...|+++|+.+++...... ..+.+....|+|++.+++++.+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5667899999985 554443 3569999998887655443 455566788999777777776655 46778888777
Q ss_pred ceEEEEeeCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcccccc---cceeeecCCCcceEEccCCCEEEcc-
Q 000454 616 IPIRIYEISRFRLVDGKFSPDGASIILSDD-VG--QLYILNTGQGESQKDA---KYDQFFLGDYRPLVQDTYGNVLDQE- 688 (1491)
Q Consensus 616 k~l~~l~~h~~~VtslafSPDG~~LAsgs~-DG--~I~IWdl~tG~~~~~~---~~~~~fs~D~r~La~d~~G~vLde~- 688 (1491)
.... +..+........|+|||+.|+..+. .| .|+++++.+|+..+.. .+...|+||++.|++.....--+..
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCC
Confidence 6443 4333333445689999998887654 23 7889999887752221 1234789999998765432100000
Q ss_pred ccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCc
Q 000454 689 TQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1491)
Q Consensus 689 tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~ 757 (1491)
.....+++++.++.. +.+.... ......|||||++|+..........+.+.++...
T Consensus 347 ~~~~I~v~d~~~g~~-----------~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 347 NTFNLYLISTNSDYI-----------RRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEECCCCCe-----------EECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 001123344332221 1111111 1234889999999988743333334666666443
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=5.1e-05 Score=88.02 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=167.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCC--CeEEEE--EecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEE
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMET--AYCLAS--CRGHEGDITDLAVSSNNALVASASN-DCIIRVW 312 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~---DGtIrIWDl~T--g~~l~t--L~gH~~~VtsLafSPDG~lLASGS~-DGtIrVW 312 (1491)
.+.+..+-|+|+|++++|.++.. +|.|-.|.+.. |++... ......+-+.++++++|++|+++.. -|.|.|+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46678899999999999988854 47787777764 554332 2222334489999999999999876 4889999
Q ss_pred ECCC-CCcee--eeccCCCc----------eEEEEecCCCCceEEEEEEeC-CCcEEEEccCCCCccceeecCCCCCccc
Q 000454 313 RLPD-GLPIS--VLRGHTAA----------VTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 313 Dl~t-gk~i~--~L~gHs~~----------VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
-++. |.+.. .+..|.+. +....|.|+++ +|++..- --.|.+|++..+.+......
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~---~l~v~DLG~Dri~~y~~~dg~L~~~~~~-------- 185 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR---YLVVPDLGTDRIFLYDLDDGKLTPADPA-------- 185 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC---EEEEeecCCceEEEEEcccCcccccccc--------
Confidence 9865 43322 12235555 89999999997 6665542 23589999987765443211
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-CceEEEEeCCCCCCCCCCCCCceeeeec---CCCCCceEEEEccC
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGC 454 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~---gH~~~V~sVafSpd 454 (1491)
....+.....|+|+|+|++..+.+. +++|-+|...... ......+.+..+. .-.....+|.++++
T Consensus 186 ---------~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 186 ---------EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ---------ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 1124556789999999998876654 8999999986531 0001111111111 11335567777777
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCC--CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD--GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D--GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 532 (1491)
| .++-+|.- ..|.+|.+...... . ..
T Consensus 255 G---------------------------rFLYasNRg~dsI~~f~V~~~~g~--L-----------------------~~ 282 (346)
T COG2706 255 G---------------------------RFLYASNRGHDSIAVFSVDPDGGK--L-----------------------EL 282 (346)
T ss_pred C---------------------------CEEEEecCCCCeEEEEEEcCCCCE--E-----------------------EE
Confidence 6 33333332 34555544421100 0 00
Q ss_pred ceeccCCCCCeeEEEEcCCCCEEEEEeccc-eEEEEEC--CCCceEEEEe-CCCCCeEEEEEe
Q 000454 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNA--ADGSLVHSLT-GHTESTYVLDVH 591 (1491)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs~DG-~IrIWDl--~tgkll~tL~-gHs~~VtsLafS 591 (1491)
......+......+.|++.|++|+++..++ .|.||.+ .+|++-.... .......||.|.
T Consensus 283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 283 VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 111122233357788999999999988654 5777765 4565544332 233334555553
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=0.00017 Score=83.77 Aligned_cols=270 Identities=11% Similarity=0.127 Sum_probs=163.5
Q ss_pred CCeEEEEECCCC--Cc-eeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCC--CCccceeecCCCCCcc
Q 000454 306 DCIIRVWRLPDG--LP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARY--SQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 306 DGtIrVWDl~tg--k~-i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~t--g~~~~~i~~~~~~~~~ 377 (1491)
+.-|.+|++.+. +. ...+-.+.+.++-|+|+|+.+ .|.++-. +|.|..|.++. |.+...-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~---~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR---HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC---EEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-------
Confidence 456999998732 21 122234677889999999987 5666543 57787776664 443211100
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC----------c
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND----------V 446 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~----------V 446 (1491)
.......+.++++++|++++++. ..|.|.++-+..... .........|.+. +
T Consensus 85 -----------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~------l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 85 -----------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS------LQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred -----------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc------cccceeeeecCCCCCCccccCCcc
Confidence 01222338899999999888775 468899998854211 1112222233333 6
Q ss_pred eEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe-CCCeEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000454 447 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1491)
Q Consensus 447 ~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~ 525 (1491)
....+.|++ ++|+++. .--.|.+|++..++....
T Consensus 148 H~a~~tP~~--------------------------~~l~v~DLG~Dri~~y~~~dg~L~~~------------------- 182 (346)
T COG2706 148 HSANFTPDG--------------------------RYLVVPDLGTDRIFLYDLDDGKLTPA------------------- 182 (346)
T ss_pred ceeeeCCCC--------------------------CEEEEeecCCceEEEEEcccCccccc-------------------
Confidence 667777764 4555543 234688888885442110
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECCCC-ceEEEEeC---------CCCCeEEEEEecCC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADG-SLVHSLTG---------HTESTYVLDVHPFN 594 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~tg-kll~tL~g---------Hs~~VtsLafSPdd 594 (1491)
.........+...|+|+|+|++..+.+ -+++|.+|..... ..+..++. -.....+|.++| +
T Consensus 183 -------~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-d 254 (346)
T COG2706 183 -------DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-D 254 (346)
T ss_pred -------cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-C
Confidence 001113445678899999999987765 5889999998763 22222221 123456788899 6
Q ss_pred CcEEEEEe-CCCcEEEEeCCCC-ceEEEEe---eCCcceEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 000454 595 PRIAMSAG-YDGKTIVWDIWEG-IPIRIYE---ISRFRLVDGKFSPDGASIILSDDV-GQLYILNTG 655 (1491)
Q Consensus 595 ~~lLaSgS-~DGtIrIWDl~tG-k~l~~l~---~h~~~VtslafSPDG~~LAsgs~D-G~I~IWdl~ 655 (1491)
+++|.++. ....|.+|.+... ..+..+. .+...-.++.|+|+|++|+++..+ ..|.+|...
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 67776553 2347888877542 2233222 222235688999999999988664 467888763
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=2.5e-06 Score=95.69 Aligned_cols=281 Identities=13% Similarity=0.228 Sum_probs=168.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----CceeeeccCC------------CceEEEEecCCCCceEEEE
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-----LPISVLRGHT------------AAVTAIAFSPRPGSVYQLL 346 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg-----k~i~~L~gHs------------~~VtsLaFSPdg~s~~~La 346 (1491)
....|+++.|...|.||++|...|.|.++.-... +....+++|. ..|..|.|..+++. ..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r-~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR-NHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc-ceEE
Confidence 3467999999999999999999999999975432 2233455554 35788999877643 3677
Q ss_pred EEeCCCcEEEEccCCCCccc--------eeecCCCCCccc------CC--------CCCC-CCCCCCCCcceEEEEECCC
Q 000454 347 SSSDDGTCRIWDARYSQFSP--------RIYIPRPSDAVA------GR--------NMAP-SSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 347 SgS~DGtVrIWDl~tg~~~~--------~i~~~~~~~~~~------g~--------~~~~-~~s~~~h~~~V~slafSPD 403 (1491)
..+.|.+|++|.+....... .+..+....... ++ ...+ ......|...|.+++|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 77889999999986542111 010000000000 00 0000 1122457778999999999
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC-----CCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-----NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-----~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
...++++. |=.|.+|++..... ...+..+..|. .-|++..|+|..
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~------sFnIVDiKP~nmeeLteVItSaeFhp~~----------------------- 233 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDG------SFNIVDIKPHNMEELTEVITSAEFHPEM----------------------- 233 (460)
T ss_pred hheeeecc-ceeeeeccccccCC------ceEEEeccCccHHHHHHHHhhcccCHhH-----------------------
Confidence 88887664 77899999864211 11222233332 245666666653
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
...|.-.+..|.|++-|++........ ...+.+ ...+....-+..-...|..+.|+++|++|++-
T Consensus 234 --cn~fmYSsSkG~Ikl~DlRq~alcdn~---~klfe~----------~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 234 --CNVFMYSSSKGEIKLNDLRQSALCDNS---KKLFEL----------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred --cceEEEecCCCcEEehhhhhhhhccCc---hhhhhh----------ccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 346778889999999999842210000 000000 00001111122234568889999999999987
Q ss_pred eccceEEEEECCC-CceEEEEeCCC------------CCe---EEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 559 IMDCRICVWNAAD-GSLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 559 s~DG~IrIWDl~t-gkll~tL~gHs------------~~V---tsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.. -+|+|||... ..++.++.-|. ..| ..+.|+. +...+++|+.....-||-+
T Consensus 299 dy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 299 DY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 54 4899999875 45677765443 223 3466776 4455668887777666654
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=6.5e-07 Score=105.63 Aligned_cols=290 Identities=15% Similarity=0.221 Sum_probs=182.2
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CCceeeeccCCCceEEEEecCCCCceEEEEEEeC
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t-------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~ 350 (1491)
+..+.||...|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|..+|.++.|..+.+ +++ +.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i~--Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SIA--SC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---eee--ec
Confidence 456779999999998877888899999999999999853 246678889999999999999865 444 45
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe-cCCceEEEEeCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDS 429 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG-s~DG~IrVWDl~t~~~~~s 429 (1491)
||.|.+||.--+..+....- ....+..+.|.|+-- -+..++++| +...+|+++|.+.....
T Consensus 803 D~giHlWDPFigr~Laq~~d---------------apk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~-- 864 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMED---------------APKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWT-- 864 (1034)
T ss_pred cCcceeecccccchhHhhhc---------------CcccCCCceeEeccc-Ccchheeeeccchhhheeeecccccce--
Confidence 78899999876665543311 001112233444422 234445554 67889999998764321
Q ss_pred CCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccc
Q 000454 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1491)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~ 509 (1491)
....+....+....+.+++..+.| +.++.+-..|+|.+.|.++++.+ ..
T Consensus 865 --~E~kVcna~~Pna~~R~iaVa~~G--------------------------N~lAa~LSnGci~~LDaR~G~vI---Ns 913 (1034)
T KOG4190|consen 865 --CELKVCNAPGPNALTRAIAVADKG--------------------------NKLAAALSNGCIAILDARNGKVI---NS 913 (1034)
T ss_pred --eeEEeccCCCCchheeEEEeccCc--------------------------chhhHHhcCCcEEEEecCCCcee---cc
Confidence 011222234556678888888775 68999999999999999986522 22
Q ss_pred cccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEE-EECCCCceEEEEeCCCCCeEEE
Q 000454 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV-WNAADGSLVHSLTGHTESTYVL 588 (1491)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrI-WDl~tgkll~tL~gHs~~VtsL 588 (1491)
|... ......++ .|..+.|+....|.++.| |-...|....+.+....+..-+
T Consensus 914 wrpm--------------------------ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 914 WRPM--------------------------ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CCcc--------------------------cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 3211 01111121 245566777777888888 8877776655554433332111
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCC-C---ceEEEEe--eCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 000454 589 DVHPFNPRIAMSAGYDGKTIVWDIWE-G---IPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYI 651 (1491)
Q Consensus 589 afSPdd~~lLaSgS~DGtIrIWDl~t-G---k~l~~l~--~h~~~VtslafSPDG~~LAsgs~DG~I~I 651 (1491)
. .-++ -|+++.....+.||--.. . ..+..+. ...+..++++.-|-+.-+.+|...|.|.+
T Consensus 967 q--svgp-SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 967 Q--SVGP-SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred h--ccCc-eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1 0122 344666666677774211 1 1111111 23456778888888888888888898875
No 289
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=3.2e-07 Score=113.20 Aligned_cols=166 Identities=14% Similarity=0.215 Sum_probs=125.0
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC-- 307 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DG-- 307 (1491)
...++..++|+.|+...+|++|+.+.+.|+.|+..|.|+++++.+|.......+|..+|+.|.-+-||.++++.+.-.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 356788899999999999999999999999999999999999999999999999999999999999999777765433
Q ss_pred eEEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 308 IIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 308 tIrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
-..+|++.. +.+.+.|.+ -.++.|+.... .-+.|..-..+.|||+.++....++..+.
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q---~r~~gt~~d~a~~YDvqT~~~l~tylt~~-------------- 1226 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSLQ---FRALGTEADDALLYDVQTCSPLQTYLTDT-------------- 1226 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhHH---HHHhcccccceEEEecccCcHHHHhcCcc--------------
Confidence 478999854 455555553 35678887643 22334434568999999998777653211
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
......-.+..|+|+..+|+- || .+||++.
T Consensus 1227 --~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1227 --VTSSYSNNLAHFSPCDTLILN---DG--VLWDVRI 1256 (1516)
T ss_pred --hhhhhhccccccCCCcceEee---Cc--eeeeecc
Confidence 111222367889998887763 44 3788865
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.38 E-value=3e-06 Score=95.02 Aligned_cols=237 Identities=17% Similarity=0.237 Sum_probs=149.1
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC------------CceEEEEccCcccc
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN------------DVNYVQFSGCAVAS 458 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~------------~V~sVafSpdg~as 458 (1491)
....|+++.|...|.+|++|...|.|.+|.-.... .-..+.+..+.+|.. .|..|.|..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t--- 97 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT--- 97 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc----ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC---
Confidence 34568999999999999999999999999765321 001223334555542 35555555432
Q ss_pred ccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcc-ccccccccccCCCCCCCCC------CC----
Q 000454 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK-AARWTQAYHLKVPPPPMPP------QP---- 527 (1491)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~-~~~~~~~~~l~~~~~~~~~------~~---- 527 (1491)
....++..+.|.+|++|.+........ .......++..+..+.... ..
T Consensus 98 ---------------------~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd 156 (460)
T COG5170 98 ---------------------GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD 156 (460)
T ss_pred ---------------------CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc
Confidence 124688889999999998876432111 0111111111111100000 00
Q ss_pred --CCCCCcee-ccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce---EEEEeCCC-----CCeEEEEEecCCCc
Q 000454 528 --PRGGPRQR-ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL---VHSLTGHT-----ESTYVLDVHPFNPR 596 (1491)
Q Consensus 528 --~~~~~~~~-l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl---l~tL~gHs-----~~VtsLafSPdd~~ 596 (1491)
....+... ...|...|+++.|..|...++++ .|-.|-+|++.-... +..++.|. ..|++..|||..-.
T Consensus 157 ~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 157 EIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc
Confidence 00111111 24577789999999999888876 577899999864322 22334443 36889999997777
Q ss_pred EEEEEeCCCcEEEEeCCCCceE----EE------------EeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPI----RI------------YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l----~~------------l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
++.-.+..|.|++-|++...+. .. +..-...|.++.|++.|++|++-+. -+|.|||+...
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 7777888999999999743211 01 1112236788999999999998877 78999998654
No 291
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=8e-06 Score=95.78 Aligned_cols=290 Identities=16% Similarity=0.131 Sum_probs=182.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C-eEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--A-YCLASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRLPDG 317 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T--g-~~l~tL~gH~~~VtsLafSPDG~lLASGS~-DGtIrVWDl~tg 317 (1491)
|.+.|+.+.-. -.+++++++.||.++.|.-.. | +.+..++.|-+.|.+++.+-++.++.|++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 78888877655 457999999999999997543 2 344556789999999999999999999877 999999999876
Q ss_pred Cceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 318 LPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 318 k~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
..+..++ .-.+.+..+ .++...-...-++.-.+|.|.|+|-....+...+ ...-|..+|
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~------------------fkklH~sPV 147 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY------------------FKKLHFSPV 147 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccce------------------ecccccCce
Confidence 5543332 122222221 2222111112333446788999997655433322 124488899
Q ss_pred EEEEECCCCCEEEEecCCceEEEEeCCCC-C-----CCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNACKP-N-----TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 396 ~slafSPDG~~LasGs~DG~IrVWDl~t~-~-----~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.++.+++-+..+++....|.|.-|..... + ..-.......+..+........++.|+|++
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------------- 213 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------------- 213 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--------------
Confidence 99999999999999999999999998621 0 000011111222233344567788888876
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC---CCceeccCCC-CCeeE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG---GPRQRILPTP-RGVNM 545 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~l~~h~-~~Vts 545 (1491)
..+.+-+.|..|+++++.+++............+.....+.......-+ .....+..+. ..-+.
T Consensus 214 ------------~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 214 ------------AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred ------------CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 5778888999999999998775433222111111110000000000000 0001111222 23456
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEE
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL 578 (1491)
++|...|++|+-|+.=| |+|.++.++.+++.+
T Consensus 282 ~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred eEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 88999999999887654 899999998887766
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.36 E-value=2.6e-06 Score=99.25 Aligned_cols=122 Identities=28% Similarity=0.335 Sum_probs=96.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
..+|+.+.++......-.+++...+.+|....+.+.. +-||-.-+++|+|+||+++|+++..|..|+|-.......+..
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES 188 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence 3445555555444444455677788888887755443 458999999999999999999999999999988776655555
Q ss_pred e-ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 323 L-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 323 L-~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
| -||+..|..++..++. .|++++.|++|++||+.+++++..+.
T Consensus 189 fclGH~eFVS~isl~~~~----~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDNY----LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hccccHhheeeeeeccCc----eeeecCCCCcEEEEecccCCcccccc
Confidence 4 4799999999999874 58999999999999999999886654
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.35 E-value=9.4e-05 Score=82.30 Aligned_cols=245 Identities=10% Similarity=-0.016 Sum_probs=150.5
Q ss_pred CeEEEEECCCCe--EEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCCc-eeeeccCCCceEEEEec
Q 000454 265 RLVKIWSMETAY--CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPDGLP-ISVLRGHTAAVTAIAFS 336 (1491)
Q Consensus 265 GtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSP-----DG~lLASGS~DGtIrVWDl~tgk~-i~~L~gHs~~VtsLaFS 336 (1491)
..|-+|++.+.. .+..+ +.|.|.| .-.+||.|+.-|...+|...+... +.....|...|+-+.=.
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 456677765443 22222 3344544 334899999999999999886543 33334444444333222
Q ss_pred CCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceE
Q 000454 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416 (1491)
Q Consensus 337 Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~I 416 (1491)
-+.. ..+..++.|.++++.++..+........ ..-.+.++++++|++++++.+....|
T Consensus 125 cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~--------------------~~~~~ns~~~snd~~~~~~Vgds~~V 182 (344)
T KOG4532|consen 125 CDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHN--------------------QNLTQNSLHYSNDPSWGSSVGDSRRV 182 (344)
T ss_pred cccc--cceeeccCCcceeEEEEecCcccceeec--------------------cccceeeeEEcCCCceEEEecCCCcc
Confidence 2222 2577888899999998876554333321 11237899999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCceee-eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEE
Q 000454 417 RVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrI 495 (1491)
..|.+.... ..... .....++.-.+..|+.. ...||++..||++.|
T Consensus 183 f~y~id~~s-------ey~~~~~~a~t~D~gF~~S~s~~--------------------------~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 183 FRYAIDDES-------EYIENIYEAPTSDHGFYNSFSEN--------------------------DLQFAVVFQDGTCAI 229 (344)
T ss_pred eEEEeCCcc-------ceeeeeEecccCCCceeeeeccC--------------------------cceEEEEecCCcEEE
Confidence 999886421 11111 22223333445555543 258999999999999
Q ss_pred EecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC--EEEEEeccceEEEEECCCCc
Q 000454 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR--FVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 496 WDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~--~LaSGs~DG~IrIWDl~tgk 573 (1491)
||++..... + ......-..|.+.+..+.|++.|. +|+..-.-+.+.|.|++++.
T Consensus 230 ~DVR~~~tp------------------m------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 230 YDVRNMATP------------------M------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecccccc------------------h------hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999963210 0 001111233778899999998764 35555556789999999987
Q ss_pred eEEEEeCC-------C-CCeEEEEEecCCC
Q 000454 574 LVHSLTGH-------T-ESTYVLDVHPFNP 595 (1491)
Q Consensus 574 ll~tL~gH-------s-~~VtsLafSPdd~ 595 (1491)
-.+.+... . ..|+.-.|+..+.
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCc
Confidence 76655322 2 2255556655333
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.34 E-value=8.6e-06 Score=94.98 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCCc----eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLP----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 288 VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~----i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
+..+.+++.+++||.+..+....++++..... +... .-...-+++.|..+.........++....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455677788888887777766666644332 1111 122333455555554422233334445556666655433
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
+.. ..+|-..++.++|+||+++|+++..|..|+|-..... ...-....||.
T Consensus 144 ~~~---------------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~ 194 (390)
T KOG3914|consen 144 CEP---------------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHK 194 (390)
T ss_pred cch---------------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccH
Confidence 322 2358888999999999999999999999999876431 22223346799
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~ 504 (1491)
.-|..++..++ ..|++++.|++|++||+.+++..
T Consensus 195 eFVS~isl~~~---------------------------~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 195 EFVSTISLTDN---------------------------YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hheeeeeeccC---------------------------ceeeecCCCCcEEEEecccCCcc
Confidence 99999998875 36899999999999999997754
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.33 E-value=0.0002 Score=83.27 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=75.4
Q ss_pred EEEEEEcC-CCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCeE--EEEEcCCCCEEEEEEC-----CCeEEEEECC-
Q 000454 246 VYCAIFDR-SGRYVITGSDDR-LVKIWSMETAYCLASCRGHEGDIT--DLAVSSNNALVASASN-----DCIIRVWRLP- 315 (1491)
Q Consensus 246 Vt~VaFSp-DG~~LATGS~DG-tIrIWDl~Tg~~l~tL~gH~~~Vt--sLafSPDG~lLASGS~-----DGtIrVWDl~- 315 (1491)
...++.+| .+..+|.+-.-| ...+||..+++.+..+....+.-. .-+||+||++|++.=. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 566677776665 578899999999887764333221 4579999999998643 4889999998
Q ss_pred CCCceeeeccCCCceEEEEecCCCCceEEEEEE
Q 000454 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 316 tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg 348 (1491)
+.+.+..+..|.-.-..|.+.||+. .|+++
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~---tLvVA 116 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE---TLVVA 116 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC---EEEEE
Confidence 5677888888877778899999996 55554
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=0.00012 Score=82.98 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=95.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 248 CAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCR---GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 248 ~VaFSpDG~~LATGS~DGtIrIWDl~Tg--~~l~tL~---gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
.++.+.+|+.||.- .|..|-|-...+. ..+.... ...-.-.-++||||+.+||.+...|+|+|+|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 36788999988876 5667777766543 2333333 2233457899999999999999999999999864 33333
Q ss_pred ecc-------CCCceEEEEecCCCCc---eEEEEEEeCCCcEEEEccCCCC---ccceeecCCCCCcccCCCCCCCCCCC
Q 000454 323 LRG-------HTAAVTAIAFSPRPGS---VYQLLSSSDDGTCRIWDARYSQ---FSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 323 L~g-------Hs~~VtsLaFSPdg~s---~~~LaSgS~DGtVrIWDl~tg~---~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+.. -...|..|.|.+-..+ ...|++-...|.++-|-+..+. ...... .....
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs---------------fsf~~ 144 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS---------------FSFSS 144 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE---------------EEecc
Confidence 321 2356777878664311 1367777888888777653321 111110 01112
Q ss_pred CCCcceEEEEECCCCCEEEEecC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~ 412 (1491)
.....|.++.|+|..++|++|+.
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEecc
Confidence 34668999999999898888774
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.32 E-value=4.6e-05 Score=84.71 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=156.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCCceeeeccCCCceE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT 331 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~-~l~tL~gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vt 331 (1491)
...+||.|+.-|...+|...+.. .+..+..|...|+-+.=..+. --+..++.|.++++.++.-+..-..+.-..-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 34589999999999999998654 344445555555433322222 2456677888888888765433222221112388
Q ss_pred EEEecCCCCceEEEEEEeCCCcEEEEccCCCC-ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe
Q 000454 332 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410 (1491)
Q Consensus 332 sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~-~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG 410 (1491)
++++++++. ++++.+....|.+|.+.... .+..++. .+....-.+..|+.....+|++
T Consensus 163 s~~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~~------------------a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 163 SLHYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIYE------------------APTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred eeEEcCCCc---eEEEecCCCcceEEEeCCccceeeeeEe------------------cccCCCceeeeeccCcceEEEE
Confidence 999999998 89999999999999886432 2222211 2233445788999999999999
Q ss_pred cCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCC
Q 000454 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490 (1491)
Q Consensus 411 s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D 490 (1491)
..||++.|||++...... .........|.+.+..+.|++.|. -++|+..-.-
T Consensus 222 ~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~------------------------lDLLf~sEhf 273 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGL------------------------LDLLFISEHF 273 (344)
T ss_pred ecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCc------------------------ceEEEEecCc
Confidence 999999999998643221 112233456899999999998652 2467777777
Q ss_pred CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC-CCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 491 GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP-RGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 491 GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~-~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
+.+.+.|+++.+........ ......|. ..|...+|+.++.-+.+...+ .+.=|++
T Consensus 274 s~~hv~D~R~~~~~q~I~i~----------------------~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 274 SRVHVVDTRNYVNHQVIVIP----------------------DDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ceEEEEEcccCceeeEEecC----------------------ccccccccccccccccccCCCcccccccch-hhheeec
Confidence 88899999875532111100 00112222 337777788877776666544 3444554
Q ss_pred C
Q 000454 570 A 570 (1491)
Q Consensus 570 ~ 570 (1491)
.
T Consensus 331 ~ 331 (344)
T KOG4532|consen 331 L 331 (344)
T ss_pred c
Confidence 3
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.31 E-value=0.00025 Score=80.32 Aligned_cols=215 Identities=13% Similarity=0.117 Sum_probs=114.7
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
..+-..++||||+.+||.+...|+|++||+...... ...+.. .....-...|..+.|....
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--~~~~d~~~Aiagl~Fl~~~---------------- 103 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--SFPGDLSDAIAGLIFLEYK---------------- 103 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc--ccCCccccceeeeEeeccc----------------
Confidence 344678999999999999999999999999632111 000100 0001112345555554321
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec-cCCCCCeeEEEEcC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSL 550 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~h~~~VtsVafSP 550 (1491)
....| ...|++....|.++-|-+..+... .+.... ...+ .....+|++++|+|
T Consensus 104 --~s~~w--s~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~h------------------sfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 104 --KSAQW--SYELLVINYRGQLRSYLVSVGTNQ----GYQENH------------------SFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred --ccccc--ceeEEEEeccceeeeEEEEcccCC----cceeeE------------------EEEecccCCCceeEEEEcC
Confidence 00111 125777778888877765321100 000000 0111 22467899999999
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE-EEEeCCC------cEEEEeCCCCceEEEEee
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA-MSAGYDG------KTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lL-aSgS~DG------tIrIWDl~tGk~l~~l~~ 623 (1491)
..++|++|+.... .++. -.+....+++-.+-.+.+.+. ++...|+ +..+|.+-+.+.......
T Consensus 158 ~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 158 KHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence 9999888764321 0000 001111222222211122222 1122222 123444433322222222
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 624 SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 624 h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
....|..|..||||+.||+...+|.|.+|++..-..+.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 45679999999999999999999999999997655544
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.28 E-value=0.00037 Score=79.60 Aligned_cols=230 Identities=14% Similarity=0.074 Sum_probs=145.2
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEec-CCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 290 DLAVSS-NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 290 sLafSP-DG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFS-Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
+++|.+ ++.++++-...+.|..|+..++.... +.... ...+++. +++ .|+.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g----~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG----RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS----EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC----EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578888 67777777678999999988775432 22222 6777787 664 566666655 55669888765444
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC--------ceEEEEeCCCCCCCCCCCCCceeeee
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD--------TLARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D--------G~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1491)
...+. .......++.+++.++|++.++.... |.|..++.. ..+..+
T Consensus 76 ~~~~~---------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----------~~~~~~ 129 (246)
T PF08450_consen 76 ADLPD---------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----------GKVTVV 129 (246)
T ss_dssp EEEET---------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------SEEEEE
T ss_pred eeccC---------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----------CeEEEE
Confidence 32210 01135568899999999977765433 556666653 122333
Q ss_pred cCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCC
Q 000454 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1491)
Q Consensus 440 ~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~ 519 (1491)
...-...+.|+|+|++ ..++++-+..+.|..+++..........
T Consensus 130 ~~~~~~pNGi~~s~dg-------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------- 173 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDG-------------------------KTLYVADSFNGRIWRFDLDADGGELSNR----------- 173 (246)
T ss_dssp EEEESSEEEEEEETTS-------------------------SEEEEEETTTTEEEEEEEETTTCCEEEE-----------
T ss_pred ecCcccccceEECCcc-------------------------hheeecccccceeEEEeccccccceeee-----------
Confidence 3334567889999986 1245677888888888886422100000
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe-cCCCcEE
Q 000454 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIA 598 (1491)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS-Pdd~~lL 598 (1491)
.....+.......-.+++..+|++.++....+.|.+++.. |+++..+......+++++|. ++...++
T Consensus 174 -----------~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 174 -----------RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -----------EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred -----------eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 0000111112346789999999988888889999999987 99998887666689999995 4445566
Q ss_pred EEE
Q 000454 599 MSA 601 (1491)
Q Consensus 599 aSg 601 (1491)
+|.
T Consensus 242 vTt 244 (246)
T PF08450_consen 242 VTT 244 (246)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.28 E-value=0.00038 Score=85.37 Aligned_cols=267 Identities=14% Similarity=0.086 Sum_probs=154.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEE-
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD-LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA- 332 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~Vts-LafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vts- 332 (1491)
+..|+.++.+|.|..+|..+|+.+....... .+.+ ..+ .+..++.++.++.|..+|..+|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 5567778889999999999999988776432 2221 122 2446667778899999999999988776532111100
Q ss_pred EEecC--CCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC--CCCEEE
Q 000454 333 IAFSP--RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA--NGTVFV 408 (1491)
Q Consensus 333 LaFSP--dg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP--DG~~La 408 (1491)
..-+| .+. .++.++.+|.|..+|..+++.........+.... .......+..+| .+..++
T Consensus 197 ~~~sP~v~~~---~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~-------------~~~~~~~~~~sP~v~~~~vy 260 (394)
T PRK11138 197 GESAPATAFG---GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT-------------EIDRLVDVDTTPVVVGGVVY 260 (394)
T ss_pred CCCCCEEECC---EEEEEcCCCEEEEEEccCChhhheeccccCCCcc-------------chhcccccCCCcEEECCEEE
Confidence 00111 112 5677788999999999998876554321111000 000000011112 244566
Q ss_pred EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
+++.+|.+..+|+.+++. +-... ......+.. .++.++.++
T Consensus 261 ~~~~~g~l~ald~~tG~~---------~W~~~--~~~~~~~~~----------------------------~~~~vy~~~ 301 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQI---------VWKRE--YGSVNDFAV----------------------------DGGRIYLVD 301 (394)
T ss_pred EEEcCCeEEEEECCCCCE---------EEeec--CCCccCcEE----------------------------ECCEEEEEc
Confidence 677789999999876431 11100 000111111 135788888
Q ss_pred CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEE
Q 000454 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568 (1491)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWD 568 (1491)
.+|.+..+|..+++. .|..... . .....+.++ .+.+|++++.+|.|+++|
T Consensus 302 ~~g~l~ald~~tG~~-----~W~~~~~----------------------~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 302 QNDRVYALDTRGGVE-----LWSQSDL----------------------L-HRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CCCeEEEEECCCCcE-----EEccccc----------------------C-CCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999987542 2321100 0 000111111 245778889999999999
Q ss_pred CCCCceEEEEeCCCCCeEE-EEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 569 AADGSLVHSLTGHTESTYV-LDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 569 l~tgkll~tL~gHs~~Vts-LafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..+|+.+....-....+.+ ..+. ++ .|+.++.||.|+.+++
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~~--~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVVA--DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEEE--CC-EEEEEeCCceEEEEeC
Confidence 9999998877644333332 2221 44 4456788999888764
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.26 E-value=1.3e-05 Score=88.60 Aligned_cols=111 Identities=19% Similarity=0.315 Sum_probs=81.2
Q ss_pred CeeEEEEcCCCC-EEEEEeccceEEEEECCCCceE-EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000454 542 GVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLV-HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 542 ~VtsVafSPDG~-~LaSGs~DG~IrIWDl~tgkll-~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~ 619 (1491)
.|++++-+|..+ .+++|+.||.+-+||.+..... ..+..|..+|+.+-|||.++..|++++.||.+.-||..+ +.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~ 259 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS 259 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE
Confidence 388888888654 5667889999999999887543 356889999999999999999999999999999999853 3222
Q ss_pred EEee--------CCcce--------------EEE-EEcCCCCEEEEEeCCCcEEEEE
Q 000454 620 IYEI--------SRFRL--------------VDG-KFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 620 ~l~~--------h~~~V--------------tsl-afSPDG~~LAsgs~DG~I~IWd 653 (1491)
.-.. ...+| .++ .|.--|..|++|++-+.|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1000 00011 111 3444678889988888888875
No 302
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00026 Score=87.36 Aligned_cols=226 Identities=6% Similarity=-0.014 Sum_probs=125.0
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.+-|.. |...+.+... +.+....|+|+++. .++..+. ...|.++|+.+++......
T Consensus 170 ~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~--~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--------------- 230 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQT--AFYYTSYGERKPTLYKYNLYTGKKEKIAS--------------- 230 (419)
T ss_pred eEEEECCC-CCceeEEccC-CCeEeEEECCCCCc--EEEEEEccCCCCEEEEEECCCCcEEEEec---------------
Confidence 45555553 3333334333 37889999999872 1333332 3568888998776433221
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEe-cC--CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTG-SS--DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasG-s~--DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
..+......|+|||+.|+.. +. +..|.++++.++ ....+..+........|+|+|
T Consensus 231 ------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g----------~~~~LT~~~~~d~~p~~SPDG------ 288 (419)
T PRK04043 231 ------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK----------TLTQITNYPGIDVNGNFVEDD------ 288 (419)
T ss_pred ------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC----------cEEEcccCCCccCccEECCCC------
Confidence 23345567899999877654 32 356777787542 223333333333456799987
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
...+++....| .|.++|+.+++ ..++...
T Consensus 289 -------------------~~I~F~Sdr~g~~~Iy~~dl~~g~------------------------------~~rlt~~ 319 (419)
T PRK04043 289 -------------------KRIVFVSDRLGYPNIFMKKLNSGS------------------------------VEQVVFH 319 (419)
T ss_pred -------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEeCccC
Confidence 12333433444 45555655422 1111111
Q ss_pred CCCeeEEEEcCCCCEEEEEecc---------ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTI 608 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~D---------G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIr 608 (1491)
.. ....|||||++|+..... ..|++.|+.++... .+... .......|+|++..++++....+ .|.
T Consensus 320 g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 320 GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 11 124899999998876643 36889999888653 34332 22335889996665555544333 355
Q ss_pred EEeCCCCceEEEEeeCCcce
Q 000454 609 VWDIWEGIPIRIYEISRFRL 628 (1491)
Q Consensus 609 IWDl~tGk~l~~l~~h~~~V 628 (1491)
+.++ +|.....+....+.+
T Consensus 396 ~~~l-~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 396 IIRL-NYNKSFLFPLKVGKI 414 (419)
T ss_pred EEec-CCCeeEEeecCCCcc
Confidence 6666 444444444333333
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.22 E-value=3.6e-06 Score=67.64 Aligned_cols=38 Identities=21% Similarity=0.686 Sum_probs=36.8
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWD 271 (1491)
++++++.+|.+.|++|+|+|++.+||+|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999999999999999999999999999999997
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.21 E-value=0.00042 Score=77.97 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=89.4
Q ss_pred CCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCC
Q 000454 263 DDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 263 ~DGtIrIWDl~Tg~~l~tL~gH--~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~ 340 (1491)
++|+|..||..+|+.+....-- .....+. ..+++.+|++++.++.|..||..+|+.+..+.. ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 4789999999999999887631 1222222 233566777878999999999999998877764 2222111222222
Q ss_pred ceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEe
Q 000454 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 341 s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWD 420 (1491)
.+++++.++.|..+|..+|+.+......... .......+.....+..++++..++.|..+|
T Consensus 78 ---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 78 ---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSP----------------PAGVRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp ---EEEEEETTSEEEEEETTTSCEEEEEEE-SSC----------------TCSTB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred ---ccccccceeeeEecccCCcceeeeecccccc----------------ccccccccCceEecCEEEEEeccCcEEEEe
Confidence 5777778889999999999987763211000 000111122222377888888899999999
Q ss_pred CCC
Q 000454 421 ACK 423 (1491)
Q Consensus 421 l~t 423 (1491)
+.+
T Consensus 139 ~~t 141 (238)
T PF13360_consen 139 PKT 141 (238)
T ss_dssp TTT
T ss_pred cCC
Confidence 865
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.6e-05 Score=88.33 Aligned_cols=296 Identities=13% Similarity=0.097 Sum_probs=189.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C-CceeeeccCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEcc
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDA 359 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t--g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl 359 (1491)
|...|+.+... -.+++.+++.||.++.|--.. | ..+..+..|-+.|.+++.+-++. ++.+.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~---L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW---LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce---eEeeccCcccceeEEEe
Confidence 77777777654 456999999999999997432 2 34555678889999999999986 7778677 999999999
Q ss_pred CCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC--CEEEE-ecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVT-GSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 360 ~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG--~~Las-Gs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
.+-..+..+.+... .+.+ ++..++.. ..|++ .-.+|.|.|+|-.... ....
T Consensus 84 En~DminmiKL~~l------------------Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~~ 137 (558)
T KOG0882|consen 84 ENFDMINMIKLVDL------------------PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-------CQDG 137 (558)
T ss_pred eccchhhhcccccC------------------CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCc-------Cccc
Confidence 87665544322111 1111 11122211 13333 3357889999875422 1234
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC-CCCCccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHPKAARWTQAYH 515 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s-~k~~~~~~~~~~~~~ 515 (1491)
..-.-|..+|..+.+.+.+ +.+++....|.|..|.... -+.......|.
T Consensus 138 ~fkklH~sPV~~i~y~qa~--------------------------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~---- 187 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAG--------------------------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFE---- 187 (558)
T ss_pred eecccccCceEEEEeeccc--------------------------cceeeccccceeEeecCCCcccCcccccccc----
Confidence 4456688999999998865 6788888899999997662 11000001111
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeC---------------
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--------------- 580 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g--------------- 580 (1491)
.....-+..+.......+++.|+|+|..+.+-..|..|+++++.+|++++.+..
T Consensus 188 -----------~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 188 -----------LKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred -----------ccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 111111222333455678999999999999999999999999999987665421
Q ss_pred -----------------CCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCC-----------------
Q 000454 581 -----------------HTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR----------------- 625 (1491)
Q Consensus 581 -----------------Hs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~----------------- 625 (1491)
|.. .-+.+.|.. .+.+|+-++-=| |+|.++.++++++.+-...
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~ 334 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSN 334 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhcc
Confidence 111 123345554 456666555443 8999999998887763110
Q ss_pred cce--------EEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 626 FRL--------VDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 626 ~~V--------tslafSPDG~~LAsgs~DG~I~IW 652 (1491)
.+. -.+.|-+|-..++++-...++++|
T Consensus 335 ~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 335 LAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred chhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000 012366677777777777888888
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.16 E-value=0.00032 Score=78.91 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=134.0
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+|+|..||..+++.+....+.. ......+.. .+++..+++++.++.|..||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG------ 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------------------GIGGPVATA-VPDGGRVYVASGDGNLYALDAKTG------ 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------------------SCSSEEETE-EEETTEEEEEETTSEEEEEETTTS------
T ss_pred CCEEEEEECCCCCEEEEEECCC------------------CCCCccceE-EEeCCEEEEEcCCCEEEEEECCCC------
Confidence 6889999999988877764311 011122112 235666777788999999998763
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
+.+-.... ...+..... .....++.++.++.|..+|..+++. .|
T Consensus 57 ---~~~W~~~~-~~~~~~~~~---------------------------~~~~~v~v~~~~~~l~~~d~~tG~~-----~W 100 (238)
T PF13360_consen 57 ---KVLWRFDL-PGPISGAPV---------------------------VDGGRVYVGTSDGSLYALDAKTGKV-----LW 100 (238)
T ss_dssp ---EEEEEEEC-SSCGGSGEE---------------------------EETTEEEEEETTSEEEEEETTTSCE-----EE
T ss_pred ---CEEEEeec-cccccceee---------------------------ecccccccccceeeeEecccCCcce-----ee
Confidence 23322222 111111101 1135778888899999999888663 23
Q ss_pred cc-ccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCC-----
Q 000454 511 TQ-AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES----- 584 (1491)
Q Consensus 511 ~~-~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~----- 584 (1491)
.. .... .............++..++++..++.|..+|+.+|+.+.........
T Consensus 101 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 101 SIYLTSS---------------------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEE-SS---------------------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eeccccc---------------------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 21 1000 00001111222223788888888999999999999999888764422
Q ss_pred -----e-EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 585 -----T-YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 585 -----V-tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
+ ..+.+. ++ .++.++.++.+..+|+.+|+.+.... ...+.. ....++..|++++.+|.|.+||+.+|+
T Consensus 160 ~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 160 SSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1 222222 34 55556667754444999999775333 222222 256788888888899999999999997
Q ss_pred cc
Q 000454 659 SQ 660 (1491)
Q Consensus 659 ~~ 660 (1491)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.16 E-value=3.8e-05 Score=85.09 Aligned_cols=196 Identities=13% Similarity=0.157 Sum_probs=118.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE------------EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL------------ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l------------~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
|+.+.|+.+ ..|+++..++.+......++.+. +.+..|..+-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 566666644 35677766666666655444433 23333444433444444577899999999999998
Q ss_pred CCCCCce-eeec-cCCCceEEEEecCCCCceEEEEEEeCC------CcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 314 LPDGLPI-SVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDD------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 314 l~tgk~i-~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~D------GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
.+.-..+ ..+. .|.+ -.+.+....+. ++.+..= +..++|+++..+.....
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~----~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~----------------- 175 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGN----SILSGGCGNWNAQDNFYANTLDPIKTLIPS----------------- 175 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeeccc----EEecCCcceEeeccceeeeccccccccccc-----------------
Confidence 7652111 1111 1111 11222223332 2222222 23445554422211100
Q ss_pred CCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 386 SSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
......|.+++-+|. ..++++|+.||.+.+||++.. ..+...+..|...+..|.|+|..
T Consensus 176 ---~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~--------- 235 (319)
T KOG4714|consen 176 ---KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKN--------- 235 (319)
T ss_pred ---ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCC---------
Confidence 011223888888885 457788999999999999864 23566788999999999999864
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
+..|++++.||.+..||..+
T Consensus 236 ----------------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 ----------------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ----------------chheeEecCCCcEEEEcCCC
Confidence 57999999999999999874
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.15 E-value=0.0023 Score=83.60 Aligned_cols=260 Identities=11% Similarity=0.122 Sum_probs=146.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEcc----C
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA----R 360 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl----~ 360 (1491)
...|.++.|..+..-|+.+...|.|.+-|..+.... ....-...|.+++|+||.. .++..+..++|.+-.- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE---LLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEeccccch
Confidence 468999999999999999999999999988766432 2223457899999999998 7777877777776432 1
Q ss_pred CCCccceeec--CCCCCcccCCCCCCCCCC---------------C---CCCcceEEEEECCCCCEEEEe-----cCCce
Q 000454 361 YSQFSPRIYI--PRPSDAVAGRNMAPSSSA---------------G---PQSHQIFCCAFNANGTVFVTG-----SSDTL 415 (1491)
Q Consensus 361 tg~~~~~i~~--~~~~~~~~g~~~~~~~s~---------------~---~h~~~V~slafSPDG~~LasG-----s~DG~ 415 (1491)
..+.+..-.. ........|+........ . .....=+.++|--||.++|+. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 1111100000 000000001100000000 0 012223469999999999983 33378
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE---eCCCe
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGS 492 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg---S~DGt 492 (1491)
|+|||-. +..... -....+.-.+++|-|.| ..+++. ..|+.
T Consensus 224 irV~drE-g~Lns~---------se~~~~l~~~LsWkPsg--------------------------s~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 224 IRVYDRE-GALNST---------SEPVEGLQHSLSWKPSG--------------------------SLIAAIQCKTSDSD 267 (1265)
T ss_pred EEEeccc-chhhcc---------cCcccccccceeecCCC--------------------------CeEeeeeecCCCCc
Confidence 9999985 221111 11122333567888865 344443 44667
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE---EeccceEEEEEC
Q 000454 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA---AIMDCRICVWNA 569 (1491)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS---Gs~DG~IrIWDl 569 (1491)
|.++.-+..+ ++. + ..........|..++|+.++..||+ ......|++|-+
T Consensus 268 IvffErNGL~-hg~-------f------------------~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 268 IVFFERNGLR-HGE-------F------------------VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred EEEEecCCcc-ccc-------c------------------ccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 8888655321 100 0 0011112223889999999999998 445556999998
Q ss_pred CCCc--eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 570 ADGS--LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 570 ~tgk--ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.+-. +.+.+.-..... +.|+|-....+..-..+|.+.++++
T Consensus 322 ~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 322 GNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 7643 233343333222 7788744443333335555555544
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.11 E-value=0.0016 Score=74.42 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=119.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCCceeeecc
Q 000454 248 CAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS-SNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 248 ~VaFSp-DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafS-PDG~lLASGS~DGtIrVWDl~tgk~i~~L~g 325 (1491)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++.++ .+... .+.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeec
Confidence 678998 78888887789999999999886543 22222 7777887 665554 44454 456669988854433332
Q ss_pred -----CCCceEEEEecCCCCceEEEEEEeCC--------CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 326 -----HTAAVTAIAFSPRPGSVYQLLSSSDD--------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 326 -----Hs~~VtsLaFSPdg~s~~~LaSgS~D--------GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
.....+.+++.|++. +.++.... |.|..++.. ++...... .-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~---ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------------------~~ 133 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN---LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------------------GL 133 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------------------EE
T ss_pred cCCCcccCCCceEEEcCCCC---EEEEecCCCccccccccceEEECCC-CeEEEEec---------------------Cc
Confidence 345688999999986 55554433 446666665 33222110 12
Q ss_pred cceEEEEECCCCCEEE-EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 393 HQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 393 ~~V~slafSPDG~~La-sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
.....++|+|+++.|+ +-+..+.|..|++...... ......+..+....+....+++..+|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~g~pDG~~vD~~G---------------- 195 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE--LSNRRVFIDFPGGPGYPDGLAVDSDG---------------- 195 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEE-SSSSCEEEEEEEBTTS----------------
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccc--eeeeeeEEEcCCCCcCCCcceEcCCC----------------
Confidence 3467999999998665 5667888999988532110 00011122222222346677777665
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
+..++....+.|.+++..
T Consensus 196 ----------~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 ----------NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp -----------EEEEEETTTEEEEEETT
T ss_pred ----------CEEEEEcCCCEEEEECCC
Confidence 466666678899999877
No 310
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.09 E-value=0.00083 Score=81.23 Aligned_cols=304 Identities=15% Similarity=0.074 Sum_probs=156.2
Q ss_pred cCCCCEEEEEe---------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 252 DRSGRYVITGS---------DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 252 SpDG~~LATGS---------~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68899888752 346899999999876554443 67899999999999999986 57899999877744332
Q ss_pred ec-c-------C---------CCceEEEEecCCCCceEEEEEEe-CCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 323 LR-G-------H---------TAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 323 L~-g-------H---------s~~VtsLaFSPdg~s~~~LaSgS-~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
-. + - -+.-.++-|+||++ +|+... .+..|..+.+-.......
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~~~~~~~~~----------------- 138 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPLPDYSPPDS----------------- 138 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCC---EEEEEEECCcCCceEEeeccCCccc-----------------
Confidence 21 1 0 11235688999998 555443 444455444321100000
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeee---ecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV---LSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~---l~gH~~~V~sVafSpdg~as~~s 461 (1491)
.-..+..+.+-.-|.-.. .-.+.|+++.+++.. .+.. +..-..-+..+.|.+++..
T Consensus 139 ------~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~-------~~~~~~~~~~~~~yl~~v~W~~d~~~---- 197 (353)
T PF00930_consen 139 ------QYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTT-------ELDPPNSLNPQDYYLTRVGWSPDGKR---- 197 (353)
T ss_dssp ------SS-EEEEEE--BTTS-------EEEEEEEESSSTCCC-------EE---HHHHTSSEEEEEEEEEETTEE----
T ss_pred ------cCCcccccccCCCCCcCC----ceEEEEEECCCCcEE-------EeeeccccCCCccCcccceecCCCcE----
Confidence 001233343322222111 113566777654321 1111 1233456778888877510
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCC---eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
=.+.....+. .+.+.|+.++........ ...+
T Consensus 198 --------------------l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-------------------------~~~~ 232 (353)
T PF00930_consen 198 --------------------LWVQWLNRDQNRLDLVLCDASTGETRVVLEE-------------------------TSDG 232 (353)
T ss_dssp --------------------EEEEEEETTSTEEEEEEEEECTTTCEEEEEE-------------------------ESSS
T ss_pred --------------------EEEEEcccCCCEEEEEEEECCCCceeEEEEe-------------------------cCCc
Confidence 0122223322 234445544321110000 0000
Q ss_pred CCCCeeEEEEc-CCCCE-EEEEeccc--eEEEEECCCCceEEEEeCCCCCeEE-EEEecCCCcEEEEEeCCC----cEEE
Q 000454 539 TPRGVNMIVWS-LDNRF-VLAAIMDC--RICVWNAADGSLVHSLTGHTESTYV-LDVHPFNPRIAMSAGYDG----KTIV 609 (1491)
Q Consensus 539 h~~~VtsVafS-PDG~~-LaSGs~DG--~IrIWDl~tgkll~tL~gHs~~Vts-LafSPdd~~lLaSgS~DG----tIrI 609 (1491)
--.....+.|. +++.. |.....+| .|++++...+. ...+....-.|.. +.|.+.++.++++|..++ .|..
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 00112234443 55554 44444555 46677776665 3455544555644 678887777777887643 5555
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEe
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs 644 (1491)
-++..+..+..+....+.-..+.|||||++++...
T Consensus 312 v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 312 VSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 56653455556654443336899999999998654
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.06 E-value=0.0045 Score=78.26 Aligned_cols=315 Identities=12% Similarity=0.058 Sum_probs=163.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCC------CeE--EEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccC
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG------DIT--DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH 326 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~------~Vt--sLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gH 326 (1491)
+..|..++.++.|.-.|..+|+.+..+..... .+. .+++. ++..++.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999998877653322 110 11111 2257788888999999999999998776543
Q ss_pred CCc-----eE-EEEecCCCCceEEEEEEe---------CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC-CCCCC
Q 000454 327 TAA-----VT-AIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS-SSAGP 390 (1491)
Q Consensus 327 s~~-----Vt-sLaFSPdg~s~~~LaSgS---------~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~-~s~~~ 390 (1491)
... |. ...+.. . .++.++ .+|.|..+|..+++.+-.+....+...... ..... .....
T Consensus 140 ~~~~~~~~i~ssP~v~~--~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~-~~~~~~~~~~~ 213 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP-TWGPDRQMWGP 213 (488)
T ss_pred CCcCcceEecCCCEEEC--C---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC-CCCCCcceecC
Confidence 221 11 112222 1 344443 468899999999988777654211100000 00000 00000
Q ss_pred CCcce-EEEEECCCCCEEEEecCCc------------------eEEEEeCCCCCCCCCCCCCceeeeec--CCCCCceEE
Q 000454 391 QSHQI-FCCAFNANGTVFVTGSSDT------------------LARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYV 449 (1491)
Q Consensus 391 h~~~V-~slafSPDG~~LasGs~DG------------------~IrVWDl~t~~~~~s~~~~~~i~~l~--gH~~~V~sV 449 (1491)
....| ...++.+.+..+++++.++ .|.-+|+.+++. .-... .|.......
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~---------~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV---------KWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE---------EEEeeCCCCCCccccc
Confidence 11112 1345555566777776665 566666655321 11111 110000000
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
...|.. .... .... .....++.++.+|.+...|..+++.. |.....
T Consensus 285 ~s~p~~-------~~~~------~~~g--~~~~~V~~g~~~G~l~ald~~tG~~~-----W~~~~~-------------- 330 (488)
T cd00216 285 PNQPSL-------ADIK------PKDG--KPVPAIVHAPKNGFFYVLDRTTGKLI-----SARPEV-------------- 330 (488)
T ss_pred CCCCeE-------Eecc------ccCC--CeeEEEEEECCCceEEEEECCCCcEe-----eEeEee--------------
Confidence 000000 0000 0000 00125778889999999999987633 322111
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEE------------------EeccceEEEEECCCCceEEEEeCCC--------C
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLA------------------AIMDCRICVWNAADGSLVHSLTGHT--------E 583 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaS------------------Gs~DG~IrIWDl~tgkll~tL~gHs--------~ 583 (1491)
...++.+| ..+++ ...+|.|.-.|+.+|+.+....... .
T Consensus 331 -------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~ 395 (488)
T cd00216 331 -------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGF 395 (488)
T ss_pred -------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCC
Confidence 00011111 11111 2245678888888888776654321 1
Q ss_pred Ce--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEE--EEEcCCCC
Q 000454 584 ST--YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD--GKFSPDGA 638 (1491)
Q Consensus 584 ~V--tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vts--lafSPDG~ 638 (1491)
+. ..+.. .+.+|+.++.||.|+.+|..+|+.+..+... ..+.. +.|..+|+
T Consensus 396 ~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~ 450 (488)
T cd00216 396 PHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGK 450 (488)
T ss_pred cccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCE
Confidence 11 11222 3356777889999999999999999998753 33332 33444554
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=0.0099 Score=66.55 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=79.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLa 334 (1491)
..+++.|+..+.+.--|..+|.+...-. -...|.+-+.- -|++++.|+..|.+++.++.+|..+..+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577788888888888888888776432 12233332222 477899999999999999999988877764333222334
Q ss_pred ecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 335 FSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
..+++. .+..++.|++....|.++..++...
T Consensus 101 ~d~~~g---lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 101 CDFDGG---LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EcCCCc---eEEEecCCCcEEEecccccceEEec
Confidence 556666 8999999999999999988776664
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=1.4e-05 Score=91.30 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=112.9
Q ss_pred EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE
Q 000454 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg 487 (1491)
++.+.+..|-+-++.++.. ..-.....|.+++|...+ +.++.|
T Consensus 228 fs~G~sqqv~L~nvetg~~-----------qsf~sksDVfAlQf~~s~--------------------------nLv~~G 270 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-----------QSFQSKSDVFALQFAGSD--------------------------NLVFNG 270 (425)
T ss_pred ecccccceeEEEEeecccc-----------cccccchhHHHHHhcccC--------------------------CeeEec
Confidence 3344466677888876421 111245678888887543 689999
Q ss_pred eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCCEEEEEeccceEEE
Q 000454 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDCRICV 566 (1491)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSGs~DG~IrI 566 (1491)
...|.|..+|++.+.. .........-|...|+++..-. ++++|++.+++|+|++
T Consensus 271 cRngeI~~iDLR~rnq-------------------------G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 271 CRNGEIFVIDLRCRNQ-------------------------GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKL 325 (425)
T ss_pred ccCCcEEEEEeeeccc-------------------------CCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeE
Confidence 9999999999996421 0112233455788888887766 7889999999999999
Q ss_pred EECCCCce---EEEEeCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 567 WNAADGSL---VHSLTGHTESTYVLDVHPF-NPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 567 WDl~tgkl---l~tL~gHs~~VtsLafSPd-d~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
||.+.-++ +.++.||...-.-+-++-+ ...+++++|.|...+||.+..|.++.++...
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 99987766 8999999765444444321 4467888999999999999999999988743
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.99 E-value=0.00068 Score=78.89 Aligned_cols=219 Identities=15% Similarity=0.057 Sum_probs=134.8
Q ss_pred eeEEEEcC-CCCEEEEEeccce-EEEEECCCCceEEEEeCCCCCeE--EEEEecCCCcEEEEE----eCCCcEEEEeCC-
Q 000454 543 VNMIVWSL-DNRFVLAAIMDCR-ICVWNAADGSLVHSLTGHTESTY--VLDVHPFNPRIAMSA----GYDGKTIVWDIW- 613 (1491)
Q Consensus 543 VtsVafSP-DG~~LaSGs~DG~-IrIWDl~tgkll~tL~gHs~~Vt--sLafSPdd~~lLaSg----S~DGtIrIWDl~- 613 (1491)
...++.+| .+..++.+-.-|+ +.+||..+++..+.+....+.-. .-+|++++..+++|- ...|.|-|||+.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45678888 5556666666554 78999999999887755444322 357999554444432 346899999998
Q ss_pred CCceEEEEeeCCcceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCcccccccceee-ecCCCc
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPDGASIILSDD------------------VGQLYILNTGQGESQKDAKYDQF-FLGDYR 674 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~------------------DG~I~IWdl~tG~~~~~~~~~~~-fs~D~r 674 (1491)
..+.+..|..+.-.-..+.+.|||+.|+++-. +-.|.+.|..+|+++........ -.-.-|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66788888877667778999999988888621 23455666777766554221111 112356
Q ss_pred ceEEccCCCEEEccccccCccccCCCccccccC------CCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCc
Q 000454 675 PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAM------IPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 748 (1491)
Q Consensus 675 ~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~------~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~ 748 (1491)
.|+.+..|.|+.. .|.-...+..++.+..... .+.|+.... .-.--+-+|+++++|..+|+. ....+.
T Consensus 167 HLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~---~l~~Y~gSIa~~~~g~~ia~t--sPrGg~ 240 (305)
T PF07433_consen 167 HLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWR---RLNGYIGSIAADRDGRLIAVT--SPRGGR 240 (305)
T ss_pred eEEecCCCcEEEE-EecCCCCCccCCeEEEEcCCCcceeccCChHHHH---hhCCceEEEEEeCCCCEEEEE--CCCCCE
Confidence 7888888888763 2222222332332222111 112211111 112236689999999999876 134459
Q ss_pred EEeccCCCcccccc-CCccc
Q 000454 749 YQLQPLADLDVMID-PLPEF 767 (1491)
Q Consensus 749 v~lw~~~~~~~lie-plp~~ 767 (1491)
+.+|+..++..+.. ++++.
T Consensus 241 ~~~~d~~tg~~~~~~~l~D~ 260 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLPDA 260 (305)
T ss_pred EEEEECCCCCEeeccccCce
Confidence 99999988875433 34443
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.98 E-value=1.8e-05 Score=63.48 Aligned_cols=39 Identities=38% Similarity=0.708 Sum_probs=37.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
|+++.++.+|...|.+|+|+|++.+|++|+.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00031 Score=82.12 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=83.0
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEE
Q 000454 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1491)
Q Consensus 267 IrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~-lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~L 345 (1491)
|++.+..+.+....+.+|...|.+|+|||... +|..++.+..|.|.|+++...+..+..+ ..+++++|.-+.. ++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~--h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER--HVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc--cee
Confidence 77777777777777788999999999999877 7888999999999999999988888877 8899999998875 589
Q ss_pred EEEeCCCcEEEEccCCCC
Q 000454 346 LSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~ 363 (1491)
+.|...|.|.|||++..+
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999998654
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.94 E-value=0.00011 Score=92.56 Aligned_cols=169 Identities=15% Similarity=0.228 Sum_probs=126.8
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--- 305 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~--- 305 (1491)
+..+.+..+...--.+.|+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|.++... |++|++++.
T Consensus 163 Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R 238 (1118)
T KOG1275|consen 163 DLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMR 238 (1118)
T ss_pred ecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccc
Confidence 4445555555554444555444 468899999999999999999999999999999999987764 889998875
Q ss_pred ------CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC-ccceeecCCCCCccc
Q 000454 306 ------DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVA 378 (1491)
Q Consensus 306 ------DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~-~~~~i~~~~~~~~~~ 378 (1491)
|..|+|||++..+.+.-+.-+.++ .-+.|+|.-. ..+++++..|.+.+-|..+-. ......
T Consensus 239 ~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~--------- 306 (1118)
T KOG1275|consen 239 RYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVK--------- 306 (1118)
T ss_pred cccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--ceEEEEecccceeeccccccCCCcccee---------
Confidence 556899999988777666655554 6678888754 378999999999998843211 101110
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeC
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
...+.+..+..++++++|..+|.|..+|.|.+|.-
T Consensus 307 --------~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 307 --------MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred --------EEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 11224455999999999999999999999999984
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=3.9e-05 Score=87.80 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=102.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-----ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-----kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
....|.++.|...+.+|+.|+.+|.|.++|++.+ .+.+.+. |...|+++..-.+.+.+|++.+.+|+|++||+.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 5567888889888999999999999999999764 4555554 888899988777677888889999999999998
Q ss_pred CCce---EEEEeeCCcceE--EEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccc
Q 000454 614 EGIP---IRIYEISRFRLV--DGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKY 665 (1491)
Q Consensus 614 tGk~---l~~l~~h~~~Vt--slafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~ 665 (1491)
--++ +..+.+|...-. -+.+.+....|+++++|...+||.+..|.++...+.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 7666 888888755332 345567788899999999999999999998776663
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.86 E-value=0.0087 Score=78.55 Aligned_cols=265 Identities=11% Similarity=0.110 Sum_probs=141.2
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L 407 (1491)
..|.++.|..+.. .++.+...|.|.+-|..+...... +.-...|.+++|+||+.++
T Consensus 69 ~~i~s~~fl~d~~---~i~v~~~~G~iilvd~et~~~eiv---------------------g~vd~GI~aaswS~Dee~l 124 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN---SICVITALGDIILVDPETLELEIV---------------------GNVDNGISAASWSPDEELL 124 (1265)
T ss_pred cceEEEEEecccc---eEEEEecCCcEEEEcccccceeee---------------------eeccCceEEEeecCCCcEE
Confidence 5899999999886 788888899999988776543221 2245679999999999999
Q ss_pred EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc-------Ccc-c-cccccccCC----CCCCCccc
Q 000454 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG-------CAV-A-SRFSLADSS----KEDSTPKF 474 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp-------dg~-a-s~~s~~~~~----~~~~~~~~ 474 (1491)
+..+..+++.+-.-.- ... ..+ .+..-....+....+-|-. ... . .+....... ......+.
T Consensus 125 ~liT~~~tll~mT~~f-~~i-~E~---~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~ 199 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDF-EPI-AEK---PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT 199 (1265)
T ss_pred EEEeCCcEEEEEeccc-cch-hcc---ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCc
Confidence 9998888876643310 000 000 0000000001111111111 000 0 000000000 00011111
Q ss_pred cccccC-CCeEEEE----eCC-CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000454 475 KNSWFC-HDNIVTC----SRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 475 ~~~~~~-~~~LaSg----S~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1491)
.-.|.. +++|++. -.+ ..|++||-. +... ..-.+...--.+++|
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln-----------------------------s~se~~~~l~~~LsW 249 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN-----------------------------STSEPVEGLQHSLSW 249 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh-----------------------------cccCcccccccceee
Confidence 223432 3455552 233 789999866 1100 000111222357899
Q ss_pred cCCCCEEEEEe---ccceEEEEECCC---CceEEEEeCCCCCeEEEEEecCCCcEEEE---EeCCCcEEEEeCCCCc--e
Q 000454 549 SLDNRFVLAAI---MDCRICVWNAAD---GSLVHSLTGHTESTYVLDVHPFNPRIAMS---AGYDGKTIVWDIWEGI--P 617 (1491)
Q Consensus 549 SPDG~~LaSGs---~DG~IrIWDl~t---gkll~tL~gHs~~VtsLafSPdd~~lLaS---gS~DGtIrIWDl~tGk--~ 617 (1491)
-|.|..+++-. .|+.|.+|.-.. |.....+......|..++|+. ++.+|+. ......|++|-+.+-. +
T Consensus 250 kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhWYL 328 (1265)
T KOG1920|consen 250 KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHWYL 328 (1265)
T ss_pred cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeEEEE
Confidence 99999998843 456798988532 222222333334589999998 6667765 4445569999986643 1
Q ss_pred EEEEeeCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 000454 618 IRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNT 654 (1491)
Q Consensus 618 l~~l~~h~~~VtslafSPDG-~~LAsgs~DG~I~IWdl 654 (1491)
-..+....... +.|+|-- ..|.+-..+|.+.++++
T Consensus 329 Kq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 329 KQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 22222122222 8899843 34444447787777775
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.84 E-value=0.0015 Score=82.08 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=78.9
Q ss_pred EcCCCCEEEEEeccceEEEEECCC-----CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-----
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAAD-----GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP----- 617 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~t-----gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~----- 617 (1491)
+.++|++...+ ++.|.++|..+ ...+..+.- ......|+++|++..+++++..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 45688877763 67899999988 345555543 334578999997777777888899999999987552
Q ss_pred -------EEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 618 -------IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 618 -------l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
+.....+.+++ ..+|.++|....+-..|..|..|++..
T Consensus 361 ~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCcc-eEEECCCCCEEEeEeecceeEEEehHH
Confidence 44555444444 479999999888888899999999865
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.84 E-value=0.0003 Score=88.86 Aligned_cols=195 Identities=10% Similarity=0.115 Sum_probs=136.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsL 333 (1491)
++..++.|+--..+..+|+.+++..+...-....|+-|+. ++++|.+|...|+|.+-|..+.+.++++..|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4556777877778888999988888776655555666655 58899999999999999999999999999999999887
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC
Q 000454 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1491)
Q Consensus 334 aFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D 413 (1491)
...-+ .|+++|..+. .+.+ ..|
T Consensus 224 Dv~GN-----lLitCG~S~R--~~~l---------------------------------------------------~~D 245 (1118)
T KOG1275|consen 224 DVQGN-----LLITCGYSMR--RYNL---------------------------------------------------AMD 245 (1118)
T ss_pred eccCC-----eEEEeecccc--cccc---------------------------------------------------ccc
Confidence 76543 7888886532 1100 125
Q ss_pred ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 414 G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
..|.|||++... .+..+.-+.++ .-+.|.|.- ...+++++..|..
T Consensus 246 ~FvkVYDLRmmr---------al~PI~~~~~P-~flrf~Psl-------------------------~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 246 PFVKVYDLRMMR---------ALSPIQFPYGP-QFLRFHPSL-------------------------TTRLAVTSQSGQF 290 (1118)
T ss_pred chhhhhhhhhhh---------ccCCcccccCc-hhhhhcccc-------------------------cceEEEEecccce
Confidence 667788887532 12222222222 334455542 3578889999998
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEE
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWD 568 (1491)
.+-|..+... + ......+.+....+..+.+|++|..+|.|..+|.|.+|.
T Consensus 291 q~vd~~~lsN-----------------------P--~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSN-----------------------P--PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCC-----------------------C--ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8887543110 0 011222334455689999999999999999999999998
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00042 Score=86.98 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=109.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
.+.++|++++ +++||-|..+|.|++.+.. |.. .+...|... .-+|.++++|+.||.|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4678888887 6799999999999999976 443 444445443 55799999999999999999988887776
Q ss_pred eccCCCceEEEEecCC--CCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 323 LRGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPd--g~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
+. ...++.+|+++|+ ......+++|+.-| +.++.-+=-..... .......+.|.++.|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~------------------v~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS------------------VVLSEGEGPIHSIKW 168 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc------------------eeeecCccceEEEEe
Confidence 66 4578999999998 22223799999988 77765321110000 012346778999999
Q ss_pred CCCCCEEEEecCCceEEEEeCCCC
Q 000454 401 NANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 401 SPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
. |++||-++.+| |+|||+.+.
T Consensus 169 ~--g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 169 R--GNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred c--CcEEEEecCCC-cEEEecccc
Confidence 6 77888887666 899999653
No 323
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.79 E-value=0.058 Score=68.84 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCeE---E-------EEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE-GDIT---D-------LAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~-~~Vt---s-------LafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
+.+|+.++.++.|.-.|..+|+.+..+.... ..+. + +++ .+..|+.++.|+.|.-.|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889999999999988765311 1111 1 122 2346777888999999999999988765
Q ss_pred ccC--C--CceEEEEecCCCCceEEEEEEe------CCCcEEEEccCCCCccceeec
Q 000454 324 RGH--T--AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 324 ~gH--s--~~VtsLaFSPdg~s~~~LaSgS------~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
... . ..+++.-..-++ .++++. .+|.|..+|+.+|+.+-.+..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 421 1 111111111122 344443 368999999999998776643
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.79 E-value=0.0039 Score=73.52 Aligned_cols=281 Identities=13% Similarity=0.112 Sum_probs=159.8
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCCceeeeccCC-------
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGHT------- 327 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~----------DGtIrVWDl~tgk~i~~L~gHs------- 327 (1491)
+.|.|.|..+++.+..+.. +-.-.+.++|+++.+++++. .-.|.+||..+-.+...+.-..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999999888763 33445778999998887532 3359999999887665443111
Q ss_pred CceEEEEecCCCCceEEEEE--EeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-C
Q 000454 328 AAVTAIAFSPRPGSVYQLLS--SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-G 404 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaS--gS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G 404 (1491)
.....++++.+++ +++. .+---.|.|.|+...+.+..+..|. |.-.-|. .
T Consensus 95 ~~~~~~~ls~dgk---~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------------------C~~iyP~~~ 147 (342)
T PF06433_consen 95 PYKNMFALSADGK---FLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------------------------CWLIYPSGN 147 (342)
T ss_dssp --GGGEEE-TTSS---EEEEEEESSSEEEEEEETTTTEEEEEEEGTS------------------------EEEEEEEET
T ss_pred ccccceEEccCCc---EEEEEccCCCCeEEEEECCCCceeeeecCCC------------------------EEEEEecCC
Confidence 1223467888877 4443 3445668888998888877775421 2222232 2
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc--cCCC
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW--FCHD 482 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~--~~~~ 482 (1491)
.-|.+-|.||.+.-..+... ++.... ++ -.|.++. .+.+.... ....
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~--------Gk~~~~---~t-----~~F~~~~---------------dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDAD--------GKEAQK---ST-----KVFDPDD---------------DPLFEHPAYSRDGG 196 (342)
T ss_dssp TEEEEEETTSCEEEEEETST--------SSEEEE---EE-----EESSTTT---------------S-B-S--EEETTTT
T ss_pred CceEEEecCCceEEEEECCC--------CCEeEe---ec-----cccCCCC---------------cccccccceECCCC
Confidence 45777778888888777531 111111 00 1222211 01111110 1124
Q ss_pred eEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc
Q 000454 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1491)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG 562 (1491)
.++-.+..|.|+-.|+..... .+...+.+.... ...-.-.+++-.-+++++....|++.-..|
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~-----~~~~~~~~~t~~------------e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSA-----KFGKPWSLLTDA------------EKADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSE-----EEEEEEESS-HH------------HHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred eEEEEecCCEEEEEeccCCcc-----cccCcccccCcc------------ccccCcCCcceeeeeeccccCeEEEEecCC
Confidence 566678888888888775331 111111110000 000000123344578887666665532211
Q ss_pred ----------eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEee
Q 000454 563 ----------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 563 ----------~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg-S~DGtIrIWDl~tGk~l~~l~~ 623 (1491)
.|.+||+.+++.+..+.. ..++.+|+++.++.-+|++. ..++.|.|||..+|+.++.+..
T Consensus 260 ~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 388999999999998874 23477899998666566544 5689999999999999998873
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00065 Score=79.54 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=76.8
Q ss_pred EEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~ 388 (1491)
|++.+..+.+....+.+|...|..++|+|.... ++..++.+..|.|.|+++..++..+..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a------------------ 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIA------------------ 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheec------------------
Confidence 677777777777788889999999999998753 688899999999999998877666532
Q ss_pred CCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCC
Q 000454 389 GPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 389 ~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~ 424 (1491)
...+++++|.-|. ++|.+|...|.|.|||++..
T Consensus 235 ---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 ---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ---cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3679999998865 57888889999999999854
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0048 Score=76.99 Aligned_cols=117 Identities=23% Similarity=0.255 Sum_probs=92.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t-L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
|...|.--+++..+++|+.|+.-|.|.+|+-.++..... ..+..+.+..+.++++..++|+|+..|.|.|+-+..+.+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 455666677888899999999999999999887765443 2235566777788999999999999999999988764321
Q ss_pred e-----ee-ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 321 S-----VL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 321 ~-----~L-~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
. .+ +.|...|++++|++++. .|++|...|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 1 11 24778999999999998 899999999999988776
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.72 E-value=0.011 Score=69.76 Aligned_cols=276 Identities=13% Similarity=0.117 Sum_probs=158.4
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEe----------CCCcEEEEccCCCCccceeecCCCCCc
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS----------DDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS----------~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
+.|.|+|..+++.+..+.. +..-.+..+|+++ .+++++ ..-.|.+||..+-.....+.+|.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCC---EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4799999988887776652 3344577899987 444432 334699999999888887776542111
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec--CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs--~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.. ......++++.||+++++.. --..|.|.|+.. .+.+..+.- . . |....|.
T Consensus 92 ~~-------------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~---------~kvv~ei~~-P-G--C~~iyP~ 145 (342)
T PF06433_consen 92 QV-------------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA---------KKVVGEIDT-P-G--CWLIYPS 145 (342)
T ss_dssp -B-------------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT---------TEEEEEEEG-T-S--EEEEEEE
T ss_pred ee-------------cccccceEEccCCcEEEEEccCCCCeEEEEECCC---------CceeeeecC-C-C--EEEEEec
Confidence 10 11233467888888777643 345677777754 222222221 1 1 2222232
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
+ +..|.+.+.||.+....+...-.... .-..
T Consensus 146 ~-------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t~---------------------- 176 (342)
T PF06433_consen 146 G-------------------------NRGFSMLCGDGSLLTVTLDADGKEAQ--KSTK---------------------- 176 (342)
T ss_dssp E-------------------------TTEEEEEETTSCEEEEEETSTSSEEE--EEEE----------------------
T ss_pred C-------------------------CCceEEEecCCceEEEEECCCCCEeE--eecc----------------------
Confidence 2 35788999999999888874221110 0000
Q ss_pred eccCCCC-CeeEEEEcCCCCEEEEEeccceEEEEECCCCce--EEEEeCC----------CCCeEEEEEecCCCcEEEEE
Q 000454 535 RILPTPR-GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL--VHSLTGH----------TESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 535 ~l~~h~~-~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl--l~tL~gH----------s~~VtsLafSPdd~~lLaSg 601 (1491)
.+..... .+..-+++..+..++.-+.+|.|+-.|+..... ...+.-- .+.-.-+++++..+++++.-
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 0111111 122334555555555577888888888765432 2222111 11234577887555554432
Q ss_pred e--CCC-------cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCcccccc
Q 000454 602 G--YDG-------KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILS-DDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 602 S--~DG-------tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~-~LAsg-s~DG~I~IWdl~tG~~~~~~ 663 (1491)
- .+| .|.++|+.+++.+..+... .++.+|..+.|.+ +|++. ..++.|.|||..+|+.+...
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 1 122 4788899999999999843 4687999999887 55444 45799999999999876643
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0013 Score=82.76 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=103.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECC--CCCceeeeccC
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-----NALVASASNDCIIRVWRLP--DGLPISVLRGH 326 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD-----G~lLASGS~DGtIrVWDl~--tgk~i~~L~gH 326 (1491)
+|.++||||.||+|.|-.+-+.+...++. ...++.+|+++|+ .+.+++|+.-| +.++.-. ..+.-..+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 59999999999999999999988877765 4578999999997 56889999888 7776421 11111245566
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000454 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1491)
Q Consensus 327 s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~ 406 (1491)
.++|.++.|..+ ++|-++.+| |+|||+.+.+.+..+..+.. . .........+.|.++.+
T Consensus 160 eG~I~~i~W~g~-----lIAWand~G-v~vyd~~~~~~l~~i~~p~~--~------------~R~e~fpphl~W~~~~~- 218 (846)
T KOG2066|consen 160 EGPIHSIKWRGN-----LIAWANDDG-VKVYDTPTRQRLTNIPPPSQ--S------------VRPELFPPHLHWQDEDR- 218 (846)
T ss_pred ccceEEEEecCc-----EEEEecCCC-cEEEeccccceeeccCCCCC--C------------CCcccCCCceEecCCCe-
Confidence 799999999875 788888887 89999998876665533221 0 11122234577876654
Q ss_pred EEEecCCceEEEEeCC
Q 000454 407 FVTGSSDTLARVWNAC 422 (1491)
Q Consensus 407 LasGs~DG~IrVWDl~ 422 (1491)
|+.|= ..+|+|..++
T Consensus 219 LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 219 LVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEec-CCeEEEEEEe
Confidence 44443 3467787775
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.67 E-value=0.018 Score=72.74 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=70.2
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE-----------------EeCCCcEEEEeCCCCc
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-----------------AGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaS-----------------gS~DGtIrIWDl~tGk 616 (1491)
.+++++.+|.++.+|..+|+.+....... ..++..| +.+++. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 67788899999999999999987654211 1233333 222221 1246889999999999
Q ss_pred eEEEEeeCC--------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccc
Q 000454 617 PIRIYEISR--------FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD 662 (1491)
Q Consensus 617 ~l~~l~~h~--------~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~ 662 (1491)
.+....... .+...-...-.+.+|++++.+|.|+.+|..+|+.+-.
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 998887441 1111111123567889999999999999999987543
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0048 Score=78.28 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=57.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl-l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~ 617 (1491)
...+|+.+++..+++.++.+..-..|.+|.+....+ +..+..|...+.|..|++..+.+++ | .+..|.+|+.....+
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc-a-~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC-A-GSEFLYFYDSDGRGP 247 (933)
T ss_pred CCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE-e-cCceEEEEcCCCcce
Confidence 345789999999988744444556789999874442 4557888889999999984444553 3 355799999976666
Q ss_pred EEEEe
Q 000454 618 IRIYE 622 (1491)
Q Consensus 618 l~~l~ 622 (1491)
...|.
T Consensus 248 cfaf~ 252 (933)
T KOG2114|consen 248 CFAFE 252 (933)
T ss_pred eeeec
Confidence 66665
No 331
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.58 E-value=0.039 Score=67.68 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=66.3
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEE-EEEecCC-----------------C
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV-LDVHPFN-----------------P 595 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~Vts-LafSPdd-----------------~ 595 (1491)
..+......+.+++.+|++++.|+...-|.|.++|+.++..++.++|..+.-.. +...... -
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 334455667899999999999999888899999999999999988887654211 1111101 1
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
.+++-+-.-|.|.||.+.+|..+..+...
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 24445667899999999999888877643
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.58 E-value=0.033 Score=69.09 Aligned_cols=114 Identities=15% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCeeEEEEcC-CCCEEEEE----eccce----EEEEECCCCceEE--EE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 541 RGVNMIVWSL-DNRFVLAA----IMDCR----ICVWNAADGSLVH--SL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 541 ~~VtsVafSP-DG~~LaSG----s~DG~----IrIWDl~tgkll~--tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
....++.||. +...+.+. +.+|. .++|+....+... .. -.....|.+.+++| +...|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3345666766 33334432 22332 4567765544322 11 24667899999999 566667899999999
Q ss_pred EEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 609 VWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 609 IWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+||...+... +.......+.++|+|+|.++++|+..|.|.+||++-+
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999766433 3334556788999999999999999999999999765
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.0027 Score=79.52 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=85.9
Q ss_pred EEEEcCCCCEEEEEe----CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 248 CAIFDRSGRYVITGS----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 248 ~VaFSpDG~~LATGS----~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
-..|+|...++|.++ ..|.|.||- .+|++..... ..-.+++++|+|..-.||.|=.-|.+.||...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 345788777777775 357888884 5666443322 1223567999999889999988899999998877777777
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~ 360 (1491)
..|..+|..+.|+++|. .|+++..-|.|.+|...
T Consensus 98 ~th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCC---eEEEcCCCceeEEEEee
Confidence 78999999999999998 99999999999999775
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.55 E-value=0.086 Score=59.32 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=75.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsL 333 (1491)
-|++++.|+..|.+.+.+..+|.....+..-..--......+++.+|..|+.|++....|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 47789999999999999999998777665432222233456789999999999999999999988888776544444444
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 334 aFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
+..|-.. .|+.+...|.|.--.....
T Consensus 142 ~i~~g~~---sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 VIAPGDG---SLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eecCCCc---eEEEEeccceEEEEccCCC
Confidence 5555322 4566666666655544433
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.071 Score=65.99 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=64.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
.+++..|++||+|++||.-..+|.+.|....-.+.+..+... ......|.|+- .|..+..|. ..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG----------~dav~l~~~----~~l 281 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG----------NDAVVLSWE----DEL 281 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC----------CCcEEEEeC----CEE
Confidence 457899999999999999999999999987666666655533 23445666654 343344442 112
Q ss_pred EEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccccc
Q 000454 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~ 664 (1491)
..+..... .+.|.-++..++..-.|| |+|+.-...+.+...+
T Consensus 282 ~lvg~~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 282 LLVGPDGD---SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred EEECCCCC---ceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 11111111 134444555555555566 7777766665555443
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.54 E-value=0.01 Score=71.82 Aligned_cols=306 Identities=13% Similarity=0.105 Sum_probs=158.5
Q ss_pred cCCCCEEEEEE---------CCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCc
Q 000454 294 SSNNALVASAS---------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 294 SPDG~lLASGS---------~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~ 364 (1491)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+++ .|+... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCC---eeEEEe-cCceEEEECCCCCe
Confidence 67888777642 246799999998765544433 67788999999987 555554 57799999887743
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC-ceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 365 ~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D-G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.+.. .........|........ .--..-..+-|||||+.||....| ..|..+.+-. .....
T Consensus 76 ~~lT-~dg~~~i~nG~~dwvyeE--Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------------~~~~~ 137 (353)
T PF00930_consen 76 TQLT-TDGEPGIYNGVPDWVYEE--EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------------YSPPD 137 (353)
T ss_dssp EESE-S--TTTEEESB--HHHHH--HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------------ESSST
T ss_pred EEec-cccceeEEcCccceeccc--cccccccceEECCCCCEEEEEEECCcCCceEEeec---------------cCCcc
Confidence 3222 211111111111000000 001123568899999999876543 3333333210 01110
Q ss_pred ---CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC--eEEEEecCCCCCCccccccccccccCC
Q 000454 444 ---NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1491)
Q Consensus 444 ---~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~ 518 (1491)
..+..+.+-.-| ...- .+.|+|+.+++....
T Consensus 138 ~~yp~~~~~~YPk~G--------------------------------~~np~v~l~v~~~~~~~~~~~------------ 173 (353)
T PF00930_consen 138 SQYPEVESIRYPKAG--------------------------------DPNPRVSLFVVDLASGKTTEL------------ 173 (353)
T ss_dssp ESS-EEEEEE--BTT--------------------------------S---EEEEEEEESSSTCCCEE------------
T ss_pred ccCCcccccccCCCC--------------------------------CcCCceEEEEEECCCCcEEEe------------
Confidence 122223221111 1111 345677765442100
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc-----ceEEEEECCCCceEEEEeC-CCCC---eEEEE
Q 000454 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTG-HTES---TYVLD 589 (1491)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D-----G~IrIWDl~tgkll~tL~g-Hs~~---VtsLa 589 (1491)
............+..+.|++++..|++...+ ..+.++|..++.+...+.. ..+. ...+.
T Consensus 174 ------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~ 241 (353)
T PF00930_consen 174 ------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH 241 (353)
T ss_dssp ---------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE
T ss_pred ------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc
Confidence 0000112234568899999999955543322 3578889888766444322 2222 23455
Q ss_pred Ee-cCCCcEEEEEeCCCcEE--EEeCCCCceEEEEeeCCcceEE-EEEcCCCCEEEE-EeCC----CcEEEEECC-CCcc
Q 000454 590 VH-PFNPRIAMSAGYDGKTI--VWDIWEGIPIRIYEISRFRLVD-GKFSPDGASIIL-SDDV----GQLYILNTG-QGES 659 (1491)
Q Consensus 590 fS-Pdd~~lLaSgS~DGtIr--IWDl~tGk~l~~l~~h~~~Vts-lafSPDG~~LAs-gs~D----G~I~IWdl~-tG~~ 659 (1491)
|. +++..+|.....||.-. +.+...+. ...+..+...|.. +.|+++++.|.. +..+ -.|+..++. .++.
T Consensus 242 ~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 242 FLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp E-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 55 66777777777888554 45554444 4455556667755 688999887764 4432 366667777 5543
Q ss_pred ccc----cc-ceeeecCCCcceEEc
Q 000454 660 QKD----AK-YDQFFLGDYRPLVQD 679 (1491)
Q Consensus 660 ~~~----~~-~~~~fs~D~r~La~d 679 (1491)
... .. ....|+++++.++..
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EeccCCCCCceEEEECCCCCEEEEE
Confidence 221 11 367788887776543
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.46 E-value=0.13 Score=62.14 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=46.8
Q ss_pred ECCCCeEEEEEecCCCCeE-----EEEEcCCCCEEEEEEC-C--CeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 271 SMETAYCLASCRGHEGDIT-----DLAVSSNNALVASASN-D--CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 271 Dl~Tg~~l~tL~gH~~~Vt-----sLafSPDG~lLASGS~-D--GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
|..||..+..|..+...-. .=+|.+||+.|+.++. | ..+.+.|+.+++..+.-.+-........++|+++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~-- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR-- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS--
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC--
Confidence 6678877777764433222 2357788976655554 4 4577778888876655443323333567778876
Q ss_pred EEEEEEeCCCcEEEEccCCCCcccee
Q 000454 343 YQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.|+-......|+-.|+.+.+....+
T Consensus 94 -~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 94 -ALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -EEEEEETTTEEEEEETTT--EEEEE
T ss_pred -eEEEEECCCeEEEEECCcCcEEEEE
Confidence 5555555567888899887754443
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.015 Score=74.02 Aligned_cols=178 Identities=15% Similarity=0.206 Sum_probs=117.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEECCC-----eEEEEECCCC-
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNALVASASNDC-----IIRVWRLPDG- 317 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~-VtsLafSPDG~lLASGS~DG-----tIrVWDl~tg- 317 (1491)
.|+| |++.+..+|.|+.+|.|.+.+-. .+.++.++.+... |..+-...+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5555 67888899999999988877642 4455777777777 55544443446888887764 4899998642
Q ss_pred -----Ccee--eecc-----CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC--CCccceeecCCCCCcccCCCCC
Q 000454 318 -----LPIS--VLRG-----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY--SQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 318 -----k~i~--~L~g-----Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t--g~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
.++. .+.+ ...++.+++.+.+-. .+|+|-.+|.|.++.-+- ..-..
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~---~Iv~Gf~nG~V~~~~GDi~RDrgsr----------------- 163 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK---TIVCGFTNGLVICYKGDILRDRGSR----------------- 163 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc---EEEEEecCcEEEEEcCcchhccccc-----------------
Confidence 2231 1112 356788999998865 899999999999884321 11111
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.........+|+.++|..++..++....-..|.+|.+.. ++ .....+..|...+.|..+++.
T Consensus 164 -~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-------r~-p~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 164 -QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-------RT-PSLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred -eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-------CC-cceeeeccCCccceeeecCCC
Confidence 111233577899999999988733333446788998852 11 234456777778888888765
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.43 E-value=0.00015 Score=88.70 Aligned_cols=198 Identities=13% Similarity=0.177 Sum_probs=127.2
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEECC
Q 000454 245 AVYCAIFDRS--GRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSS-NNALVASAS----NDCIIRVWRLP 315 (1491)
Q Consensus 245 ~Vt~VaFSpD--G~~LATGS~DGtIrIWDl~Tg~~--l~tL~gH~~~VtsLafSP-DG~lLASGS----~DGtIrVWDl~ 315 (1491)
.+.|+++.-+ ..+++.|..+|.|-+-.+....- .....+|....++++|++ |.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4556665443 34788888999998887754321 233457888999999998 566787773 25679999998
Q ss_pred CC--Cce--eeecc-CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 316 DG--LPI--SVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 316 tg--k~i--~~L~g-Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
++ .+. ..+.+ -.....+++|..+.+ ++++|.....|.++|++........ -
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~k---lvlaGm~sr~~~ifdlRqs~~~~~s---------------------v 193 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTK---LVLAGMTSRSVHIFDLRQSLDSVSS---------------------V 193 (783)
T ss_pred cccCCCccccccccccccCccccccccCcc---hhhcccccchhhhhhhhhhhhhhhh---------------------h
Confidence 77 222 12222 334556888887665 8888888889999999833211110 0
Q ss_pred CCcceEEEEECC-CCCEEEEecCCceEEEEeC-CCCCCCCCCCCCceeeeecCC----CCCceEEEEccCcccccccccc
Q 000454 391 QSHQIFCCAFNA-NGTVFVTGSSDTLARVWNA-CKPNTDDSDQPNHEIDVLSGH----ENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 391 h~~~V~slafSP-DG~~LasGs~DG~IrVWDl-~t~~~~~s~~~~~~i~~l~gH----~~~V~sVafSpdg~as~~s~~~ 464 (1491)
....+..+...| .+.++++-. ||.|.+||. ++- ...+..+... ...+..++|+|..
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtr--------- 255 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTR--------- 255 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCC---------
Confidence 233466677778 677777665 999999994 221 1112222111 2348899999864
Q ss_pred CCCCCCCccccccccCCCeEEEEeC-CCeEEEEecCC
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRS 500 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~-DGtIrIWDl~s 500 (1491)
...+++... .++|+++|+..
T Consensus 256 ----------------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 ----------------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ----------------cchhhhhccCcceEEEecccc
Confidence 235565555 47899998874
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.36 E-value=0.0028 Score=78.08 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=64.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t 316 (1491)
.+...|.|++++|+...|+.|+.||.|++||..++....+ ...-.++.++|+|+|.++++|+..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4678999999999999999999999999999987744433 3456689999999999999999999999999853
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0037 Score=78.31 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=63.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+++++|+|..-.||.|-.-|.+.+|...+.+.......|..+|.-+.||++|+.|+++..=|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999999999999999999999998877766667899999999999999999999999999999875
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.30 E-value=0.041 Score=67.51 Aligned_cols=306 Identities=13% Similarity=0.109 Sum_probs=143.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------- 316 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t-------- 316 (1491)
.|++|.|+++..-||.|...|.|.||.+...+... ..-...-..+.|.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876433221 000111111111110 00111122223321
Q ss_pred C-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 317 G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 317 g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
| .+...+....+.|++++.+.-| +++.|..+|.+.|.|++....+....+.. ..........|
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~~~~~~~~~v 138 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SFLSKSSSSYV 138 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------T-SS----E
T ss_pred ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccc------------cccccccccCe
Confidence 1 2344555568999999998766 89999999999999999887666543311 01112245567
Q ss_pred EEEEECC-----CC---CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 396 FCCAFNA-----NG---TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 396 ~slafSP-----DG---~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
+++.|.. |+ -.+++|+..|.+.+|.+--... . ............+.+.|..
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~-g-~f~v~~~~~~~~~~~~i~~------------------- 197 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN-G-RFSVQFAGATTNHDSPILS------------------- 197 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG-G--EEEEEEEEE--SS----E-------------------
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC-C-ceEEEEeeccccCCCceEE-------------------
Confidence 7787753 33 4788899999999998731000 0 0000000000011111111
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
|...+..++........- ... ......+
T Consensus 198 -------------------------I~~i~~~~G~~a~At~~~----------------------~~~-l~~g~~i---- 225 (395)
T PF08596_consen 198 -------------------------IIPINADTGESALATISA----------------------MQG-LSKGISI---- 225 (395)
T ss_dssp -------------------------EEEEETTT--B-B-BHHH----------------------HHG-GGGT-------
T ss_pred -------------------------EEEEECCCCCcccCchhH----------------------hhc-cccCCCc----
Confidence 112222221110000000 000 0000011
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec----CCCcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP----FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP----dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~ 623 (1491)
..+++.+.+..|+|+...+.+..+......-....+.+-+ ..+..|++-..+|.|+++.+-.-+.+..+..
T Consensus 226 -----~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 226 -----PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp ------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred -----CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 1233344567899999988887776552222233344421 2456777888999999999999998888875
Q ss_pred CC----cceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 624 SR----FRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 624 h~----~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
.. ..+....|+++|..++..+. ..+.+|.
T Consensus 301 ~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEE
T ss_pred CCccccccccccEECCCCCEEEEeCc-ccEEEEE
Confidence 32 13445678899987766644 3444443
No 343
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.28 E-value=0.73 Score=60.32 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=91.9
Q ss_pred eeEEEEcCC-CCEEEEEec----------cceEEEEECCCCceEEEEeCC--CCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000454 543 VNMIVWSLD-NRFVLAAIM----------DCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1491)
Q Consensus 543 VtsVafSPD-G~~LaSGs~----------DG~IrIWDl~tgkll~tL~gH--s~~VtsLafSPdd~~lLaSgS~DGtIrI 609 (1491)
+.++.|..| +.++++|+. .|.|.||.+..+..+.....+ .+.+.++.. ++++++ ++-...|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkll--A~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLL--AGINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEE--EecCcEEEE
Confidence 455568777 778888762 578888888774444433322 344555443 467887 455678999
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--ccc-------cccceeeecCCCcceEEcc
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE--SQK-------DAKYDQFFLGDYRPLVQDT 680 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~--~~~-------~~~~~~~fs~D~r~La~d~ 680 (1491)
|++.+++.++.-..+..++..+...-.|..+++|+--+.|.+......+ ... .......+..+-..+..+.
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence 9999998887777788899999999999999999998888776654333 321 1123334444444455555
Q ss_pred CCCE
Q 000454 681 YGNV 684 (1491)
Q Consensus 681 ~G~v 684 (1491)
+|.+
T Consensus 933 ~gNl 936 (1096)
T KOG1897|consen 933 SGNL 936 (1096)
T ss_pred cccE
Confidence 5554
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.41 Score=58.74 Aligned_cols=286 Identities=14% Similarity=0.073 Sum_probs=171.8
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEE
Q 000454 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1491)
Q Consensus 267 IrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS-~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~L 345 (1491)
+.+++..+......+.-+. ....+.+.+++..+.... ....+.+.+............-...-..+++++.+. ..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~--~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN--KVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC--eEE
Confidence 6677776666666655333 567778888885444332 222455555442111111111113345778888876 245
Q ss_pred EEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC---CceEEEEeCC
Q 000454 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---DTLARVWNAC 422 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~---DG~IrVWDl~ 422 (1491)
++...+..|.+.|..+......+.. ......+++++++..+.++.. ++.+.+.|..
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~v---------------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPV---------------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeee---------------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 5555678899999776665554422 225678999999987776655 6788888876
Q ss_pred CCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
+. ..+.....-..+ ..+++.|++ ...+++-..++.|.+.|.....
T Consensus 149 t~---------~~~~~~~vG~~P-~~~a~~p~g-------------------------~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 149 TN---------KVTATIPVGNTP-TGVAVDPDG-------------------------NKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CC---------eEEEEEecCCCc-ceEEECCCC-------------------------CeEEEEecCCCeEEEEeCCCcc
Confidence 53 233332222233 788888886 2245555688999999876532
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEE-E
Q 000454 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHS-L 578 (1491)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~t-L 578 (1491)
... ...............++++|+|.++.+.... +.+.+.|..++..... +
T Consensus 194 v~~-------------------------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 194 VVR-------------------------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred eec-------------------------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 110 0000011122334568999999987776544 5899999988877765 2
Q ss_pred eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc---ceEEEEEcCC
Q 000454 579 TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPD 636 (1491)
Q Consensus 579 ~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~---~VtslafSPD 636 (1491)
..-......+.++|.+..+.+.-+..+.+.+-|..+......+..+.. .+..+++.+.
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 221114567889995555554445568899999988887777654433 3444555443
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.10 E-value=0.054 Score=67.38 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=82.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
+-...-....+.++|+|++++.+ .||.-.|+.....+.... +.-..++|.+.+ .+|+-...++|.|+.--+..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence 33344557899999999999984 567788888555554433 234567898855 56666668889996432333
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
....+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+.++.+ ..|..+
T Consensus 101 ~~k~i~~-~~~~~~If~---G~---LL~~~~-~~~i~~yDw~~~~~i~~i~v----------------------~~vk~V 150 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GN---LLGVKS-SDFICFYDWETGKLIRRIDV----------------------SAVKYV 150 (443)
T ss_dssp TT------SS-EEEEE----SS---SEEEEE-TTEEEEE-TTT--EEEEESS-----------------------E-EEE
T ss_pred cceEEcC-CcccceEEc---Cc---EEEEEC-CCCEEEEEhhHcceeeEEec----------------------CCCcEE
Confidence 3233331 122333333 44 455544 44899999999998888732 248999
Q ss_pred EECCCCCEEEEecCCceEEEEeC
Q 000454 399 AFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl 421 (1491)
.|+++|.++|..+.+ .+.|++.
T Consensus 151 ~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 151 IWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp EE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEECCCCEEEEEeCC-eEEEEEe
Confidence 999999999988755 5667665
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.06 E-value=0.14 Score=59.05 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=113.0
Q ss_pred CcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCC
Q 000454 392 SHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 392 ~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
...+..++|+|+ +.++++....+.|..++.. +..+..+.-. .+....|++..++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~-------------- 76 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNG-------------- 76 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STT--------------
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCC--------------
Confidence 345999999997 4577777888888888763 2334333222 3566777776543
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
.++++--.++.+.++++........... ...+.+. ....++.++-.++|+
T Consensus 77 ------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~-~~~~~l~-----------------~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 77 ------------RYVLSEERDQRLYIFTIDDDTTSLDRAD-VQKISLG-----------------FPNKGNKGFEGLAYD 126 (248)
T ss_dssp ------------EEEEEETTTTEEEEEEE----TT--EEE-EEEEE--------------------S---SS--EEEEEE
T ss_pred ------------EEEEEEcCCCcEEEEEEeccccccchhh-ceEEecc-----------------cccCCCcceEEEEEc
Confidence 2344444589999988854221110000 0011111 012345678999999
Q ss_pred CCCCEEEEEeccceEEEEECCC---CceEEEE--------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 550 LDNRFVLAAIMDCRICVWNAAD---GSLVHSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~t---gkll~tL--------~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
+.+..|+++-...-..||.+.. ...+... ......+.+++++|..+.+++.......|.++| .+|+++
T Consensus 127 ~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~ 205 (248)
T PF06977_consen 127 PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVV 205 (248)
T ss_dssp TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EE
T ss_pred CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE
Confidence 9988888887766666666543 2222211 123345789999998888998888999999999 588888
Q ss_pred EEEeeCC---------cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 619 RIYEISR---------FRLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 619 ~~l~~h~---------~~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
..+.-.. ...-.|+|.++|++.+++ +-+.+++|
T Consensus 206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 7776433 145689999999655554 55666655
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.05 E-value=0.25 Score=63.14 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 605 GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
|.|.-||+.+|+.+..+.... +...-.+.-.|.++++++.+|.|+.+|..+|+.+-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDF-PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCceeeEecCCC-CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 568888999998888776332 21111122355577778889999999999997654
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.0061 Score=76.12 Aligned_cols=156 Identities=14% Similarity=0.166 Sum_probs=105.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t-L~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
...|.--+++..+++++.|+.-|.+++|+...+..... ..+-.+.+..+.+|+ ...++|.|+..|.|.|+-+..+.+-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCC
Confidence 34455567788899999999999999999877765443 233445566667777 7788889999999999998765322
Q ss_pred EE-----E-eeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEcccccc
Q 000454 619 RI-----Y-EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLA 692 (1491)
Q Consensus 619 ~~-----l-~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~ 692 (1491)
.. + ..|...|++++|++|+..|.+|+..|+|..-.+... .....+...-..-|+-.+-.|....+|-..+-+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 11 1 125668999999999999999999999999888772 2222222223334444444454444443344443
Q ss_pred Ccccc
Q 000454 693 PHRRN 697 (1491)
Q Consensus 693 p~Lw~ 697 (1491)
-+|.+
T Consensus 191 ~~Lc~ 195 (726)
T KOG3621|consen 191 CILCQ 195 (726)
T ss_pred hheee
Confidence 34444
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.95 E-value=0.26 Score=57.14 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=86.0
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee--------
Q 000454 253 RSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-------- 323 (1491)
Q Consensus 253 pDG~~LATGS~DGtIrIWDl~-Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L-------- 323 (1491)
..++.|+.|..+| |.++++. ......... ...|..|...++-+.|++-+ |+.|.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999999 8999983 333333332 33499999999877777765 599999998765433311
Q ss_pred ------ccCCCceEEEE-ecCCCCceEEEEEEeCCCcEEEEccCCCC-----ccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 324 ------RGHTAAVTAIA-FSPRPGSVYQLLSSSDDGTCRIWDARYSQ-----FSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 324 ------~gHs~~VtsLa-FSPdg~s~~~LaSgS~DGtVrIWDl~tg~-----~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
......+...+ -..... ...|+ +.....|.+|.+.... ....+. -
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~---------------------l 137 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEG-SRRLC-VAVKKKILIYEWNDPRNSFSKLLKEIS---------------------L 137 (275)
T ss_pred ccccccccccCCeeEEeecccccc-ceEEE-EEECCEEEEEEEECCcccccceeEEEE---------------------c
Confidence 11223344444 112221 12444 4444588888876531 222222 2
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
...+.+++|. ++.|++|..++ ..+.|+.++
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~ 167 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTG 167 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCC
Confidence 3568888888 56677776554 667888653
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.88 E-value=0.24 Score=59.77 Aligned_cols=108 Identities=14% Similarity=0.057 Sum_probs=57.1
Q ss_pred ccceeEEEEccCCCCEEE-----EEEcCCCCEEEEEeC-C--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000454 231 QKMQNIKRVRGHRNAVYC-----AIFDRSGRYVITGSD-D--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 302 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~-----VaFSpDG~~LATGS~-D--GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLAS 302 (1491)
.++..|.+|..+.+.... =+|.+||+.|+.+++ | ..+.+.|+.+++..+.-.+-........++|+++.|+-
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 445555566544332222 356789977766655 4 46778889988776654433233335667888888877
Q ss_pred EECCCeEEEEECCCCCceeeeccCCCceEEEEecCC
Q 000454 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338 (1491)
Q Consensus 303 GS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPd 338 (1491)
......|+-.|+.+.+....+......+-...|..+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVAN 133 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeC
Confidence 666678999999998876667666676766666533
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.86 E-value=0.065 Score=66.43 Aligned_cols=132 Identities=18% Similarity=0.109 Sum_probs=82.5
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE---CC-CeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS---ND-CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS---~D-GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
.+.+=|.. |.....+..-...+..-+|+|++..++..+ .. ..|.++++.++.....+. ..+.-..-+|+||++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~- 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS- 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-
Confidence 44444444 555566665667788889999998766542 22 469999999887655554 344455679999997
Q ss_pred eEEEEEEeCCCcEE--EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cce--E
Q 000454 342 VYQLLSSSDDGTCR--IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 416 (1491)
Q Consensus 342 ~~~LaSgS~DGtVr--IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~--I 416 (1491)
.++++...||... +.|+.++.... +.. ..+.-..=.|+|||+.|+..+. .|. |
T Consensus 251 -~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~--------------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 251 -KLAFSSSRDGSPDIYLMDLDGKNLPR-LTN--------------------GFGINTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred -EEEEEECCCCCccEEEEcCCCCccee-ccc--------------------CCccccCccCCCCCCEEEEEeCCCCCcce
Confidence 4666777777654 55776665222 210 1111124578999998877654 444 4
Q ss_pred EEEeCC
Q 000454 417 RVWNAC 422 (1491)
Q Consensus 417 rVWDl~ 422 (1491)
.++++.
T Consensus 309 ~~~~~~ 314 (425)
T COG0823 309 YLYDLE 314 (425)
T ss_pred EEECCC
Confidence 444543
No 352
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.83 E-value=0.00051 Score=84.21 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=130.0
Q ss_pred CcceEEEEECCCC--CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 392 SHQIFCCAFNANG--TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 392 ~~~V~slafSPDG--~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
...+.|+++.-+. ..+++|..+|.|.+-.++.... .......+|...+++++|.+-.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLD-------------- 114 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELD-------------- 114 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------ccceeccccccccccccccccc--------------
Confidence 3457788776544 4788999999999998865321 1234557788899999998742
Q ss_pred CCccccccccCCCeEEEE----eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc-CCCCCee
Q 000454 470 STPKFKNSWFCHDNIVTC----SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL-PTPRGVN 544 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSg----S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~-~h~~~Vt 544 (1491)
.+.||.| -.|-.+.|||+.+.-.. | . ..+ .+. .......
T Consensus 115 -----------tn~LAagldkhrnds~~~Iwdi~s~ltv--------------P---k------e~~--~fs~~~l~gqn 158 (783)
T KOG1008|consen 115 -----------TNHLAAGLDKHRNDSSLKIWDINSLLTV--------------P---K------ESP--LFSSSTLDGQN 158 (783)
T ss_pred -----------HHHHHhhhhhhcccCCccceecccccCC--------------C---c------ccc--ccccccccCcc
Confidence 1345554 24667999999863210 0 0 000 000 1334456
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC-CC-CceEEEEe
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI-WE-GIPIRIYE 622 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl-~t-Gk~l~~l~ 622 (1491)
+++|-.+.++|++|.....+.++|++.. +...-.-.+..+..+.+.|..+.++++ ..||.|.+||. .. ..++..+.
T Consensus 159 s~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~ 236 (783)
T KOG1008|consen 159 SVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIIL 236 (783)
T ss_pred ccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHh
Confidence 8999999999999999999999998621 111111123346677888877788854 45999999994 22 12333222
Q ss_pred eC----CcceEEEEEcCCC--CEEEEEeCCCcEEEEECC
Q 000454 623 IS----RFRLVDGKFSPDG--ASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 623 ~h----~~~VtslafSPDG--~~LAsgs~DG~I~IWdl~ 655 (1491)
.. ...+..++|+|.. ...+..-..++|+++++.
T Consensus 237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 11 1248899999964 333344556899999873
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.82 E-value=0.0031 Score=47.57 Aligned_cols=39 Identities=31% Similarity=0.682 Sum_probs=35.4
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWD 271 (1491)
.+++..+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356778889999999999999999999999999999996
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.77 E-value=0.089 Score=65.23 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=113.1
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC-CcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D-GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
.+.+-|.. |.....+..-...+..-+|+|++....++..-... ..+.++++.++.......
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----------------- 235 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----------------- 235 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------
Confidence 34444433 55555565556677888999998744333333333 468999999887554442
Q ss_pred CCCCCCcceEEEEECCCCCEEEEe-cCCce--EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccc
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTG-SSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasG-s~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~ 463 (1491)
..+.-..-+|+|||+.|+.. ..||. |.++|+.... +..+..-.+.-..-.|+|+|
T Consensus 236 ----~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG-------- 293 (425)
T COG0823 236 ----FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDG-------- 293 (425)
T ss_pred ----cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCC--------
Confidence 12223456799999877654 45665 5666665422 22223222333355677776
Q ss_pred cCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCe
Q 000454 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1491)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~V 543 (1491)
...+++.+..|.-.||-+... +....++......-
T Consensus 294 -----------------~~ivf~Sdr~G~p~I~~~~~~----------------------------g~~~~riT~~~~~~ 328 (425)
T COG0823 294 -----------------SKIVFTSDRGGRPQIYLYDLE----------------------------GSQVTRLTFSGGGN 328 (425)
T ss_pred -----------------CEEEEEeCCCCCcceEEECCC----------------------------CCceeEeeccCCCC
Confidence 235556666777666643321 11112222222222
Q ss_pred eEEEEcCCCCEEEEEecc-ce--EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE
Q 000454 544 NMIVWSLDNRFVLAAIMD-CR--ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600 (1491)
Q Consensus 544 tsVafSPDG~~LaSGs~D-G~--IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaS 600 (1491)
..-.|||||++|+..+.. |. |.+.|+.++.-++.+. +......-.|.|++..++.+
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 256799999999887643 33 7777776665444443 22223344566644333333
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.76 E-value=0.58 Score=57.78 Aligned_cols=254 Identities=15% Similarity=0.186 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCEEEEE-ECC----CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEe-CC----------
Q 000454 288 ITDLAVSSNNALVASA-SND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DD---------- 351 (1491)
Q Consensus 288 VtsLafSPDG~lLASG-S~D----GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS-~D---------- 351 (1491)
+..++++|+|++||.+ +.. ..|+|+|+.+|+.+...-.. .....+.|.+++. .|+... .+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~---~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGK---GFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSS---EEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCC---EEEEEEeCcccccccCCCC
Confidence 3467899999988865 333 35999999999765432111 1123499999987 344333 22
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC---C-ceEEEEeCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---D-TLARVWNACKPNTD 427 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~---D-G~IrVWDl~t~~~~ 427 (1491)
..|.+|.+.+......+.+... ........+..++|+++|+.... + ..|.+.++....
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~----------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-- 263 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEP----------------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-- 263 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-T----------------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT--
T ss_pred cEEEEEECCCChHhCeeEEeec----------------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC--
Confidence 2377778776654322222110 01112667889999998775432 2 457777775421
Q ss_pred CCCCCCceeeeecCCCCCc-eEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE---eCCCeEEEEecCCCCC
Q 000454 428 DSDQPNHEIDVLSGHENDV-NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRS 503 (1491)
Q Consensus 428 ~s~~~~~~i~~l~gH~~~V-~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg---S~DGtIrIWDl~s~k~ 503 (1491)
.+......+......+ ..+....+ .+++.. ...+.|...++.....
T Consensus 264 ---~~~~~~~~l~~~~~~~~~~v~~~~~---------------------------~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 264 ---SPDAKPKLLSPREDGVEYYVDHHGD---------------------------RLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp ---TSS-SEEEEEESSSS-EEEEEEETT---------------------------EEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred ---CCcCCcEEEeCCCCceEEEEEccCC---------------------------EEEEeeCCCCCCcEEEEeccccccc
Confidence 0111222232222222 22322211 122221 2234555555554210
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-ccc--eEEEEECCCCceEEEEeC
Q 000454 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDC--RICVWNAADGSLVHSLTG 580 (1491)
Q Consensus 504 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG--~IrIWDl~tgkll~tL~g 580 (1491)
..| ...+..+...+.-..+...+.+|+... .++ .|++|++..+.....+..
T Consensus 314 ----~~~----------------------~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 314 ----AEW----------------------WTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp ----GGE----------------------EEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred ----ccc----------------------eeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 001 112334444333333444455555543 333 589999984444444433
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceEE
Q 000454 581 -HTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 581 -Hs~~VtsLafSPdd~~lLaSgS~---DGtIrIWDl~tGk~l~ 619 (1491)
-.+.|..+...+....+.++.+. -++|..||+.+++...
T Consensus 368 p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 368 PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 33445666655655555555442 4578889998887543
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.69 E-value=1.4 Score=54.68 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=46.3
Q ss_pred EEEcCCCCEEEEEeCC----------C-eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 249 AIFDRSGRYVITGSDD----------R-LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 249 VaFSpDG~~LATGS~D----------G-tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
++.+|.|.-||...++ . .|.||+.. |+++.++.-..+.|.++.|+.+. .|+....||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4455555555554333 2 59999876 77777766444899999999865 45566789999999985
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.67 E-value=0.072 Score=69.76 Aligned_cols=143 Identities=11% Similarity=0.113 Sum_probs=96.4
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCC-Cceeeec-
Q 000454 254 SGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSS-----NNALVASASNDCIIRVWRLPDG-LPISVLR- 324 (1491)
Q Consensus 254 DG~~LATG-S~DGtIrIWDl~Tg~~l~tL~gH~~~-VtsLafSP-----DG~lLASGS~DGtIrVWDl~tg-k~i~~L~- 324 (1491)
+..+|+.- .....|.-.|+++|+.+..+..|... |..++=.. +..-.+.|-.+..|..||.+-. ..+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999977654 55554221 1234456667788999998753 2221111
Q ss_pred ---cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 325 ---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 325 ---gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
.......|++-+.+| +||+|+.+|.||+||- .+.... ....+.+.+|..|..+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G----~iavgs~~G~IRLyd~-~g~~AK-------------------T~lp~lG~pI~~iDvt 627 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG----YIAVGSNKGDIRLYDR-LGKRAK-------------------TALPGLGDPIIGIDVT 627 (794)
T ss_pred cccccCCCceEEEecCCc----eEEEEeCCCcEEeecc-cchhhh-------------------hcCCCCCCCeeEEEec
Confidence 133467788888887 6999999999999993 222111 1123457889999999
Q ss_pred CCCCEEEEecCCceEEEEeC
Q 000454 402 ANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl 421 (1491)
.||++|++.+ +..|.|++.
T Consensus 628 ~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 628 ADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCcEEEEee-cceEEEEEE
Confidence 9999988766 566777775
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.60 E-value=0.82 Score=56.47 Aligned_cols=250 Identities=17% Similarity=0.156 Sum_probs=130.0
Q ss_pred eEEEEecCCCCceEEEEEEeCCC----cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 330 VTAIAFSPRPGSVYQLLSSSDDG----TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 330 VtsLaFSPdg~s~~~LaSgS~DG----tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
+..+.++|+++ .++++.+..| .|+++|+.+++.+..... ......++|.+++.
T Consensus 126 ~~~~~~Spdg~--~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---------------------~~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGK--RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---------------------NPKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSS--EEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---------------------EEESEEEEECTTSS
T ss_pred eeeeeECCCCC--EEEEEecCCCCceEEEEEEECCCCcCcCCccc---------------------ccccceEEEeCCCC
Confidence 44678899987 2333444444 499999999876543210 11123499999988
Q ss_pred EEEEecC-----------CceEEEEeCCCCCCCCCCCCCceeeeecCCCCC--ceEEEEccCccccccccccCCCCCCCc
Q 000454 406 VFVTGSS-----------DTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 406 ~LasGs~-----------DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
.|+.... ...|+.|.+.+.. ......+...... ...+..++++
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-------~~d~lvfe~~~~~~~~~~~~~s~d~----------------- 238 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-------SEDELVFEEPDEPFWFVSVSRSKDG----------------- 238 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-G-------GG-EEEEC-TTCTTSEEEEEE-TTS-----------------
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCCh-------HhCeeEEeecCCCcEEEEEEecCcc-----------------
Confidence 7665542 2347778775421 1112333333333 4456666664
Q ss_pred cccccccCCCeEE-EEeCCC---eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000454 473 KFKNSWFCHDNIV-TCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 473 ~~~~~~~~~~~La-SgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1491)
.+|+ ...... .+.+.++.... ........+......+....-
T Consensus 239 ---------~~l~i~~~~~~~~s~v~~~d~~~~~-------------------------~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 239 ---------RYLFISSSSGTSESEVYLLDLDDGG-------------------------SPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp ---------SEEEEEEESSSSEEEEEEEECCCTT-------------------------TSS-SEEEEEESSSS-EEEEE
T ss_pred ---------cEEEEEEEccccCCeEEEEeccccC-------------------------CCcCCcEEEeCCCCceEEEEE
Confidence 3433 333332 34555554310 000112222222333333333
Q ss_pred cCCCCEEEEEe---ccceEEEEECCCCce---EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceEEE
Q 000454 549 SLDNRFVLAAI---MDCRICVWNAADGSL---VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIWEGIPIRI 620 (1491)
Q Consensus 549 SPDG~~LaSGs---~DG~IrIWDl~tgkl---l~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl~tGk~l~~ 620 (1491)
...+.+++... ..+.|...++..... ...+..|...+.-..+..++..+++..-.++ .|++|++..+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 33444444332 346777788877653 3356666664444444444667777777666 578899973554444
Q ss_pred Eee-CCcceEEEEEcCCCCEEEEE--eC--CCcEEEEECCCCccc
Q 000454 621 YEI-SRFRLVDGKFSPDGASIILS--DD--VGQLYILNTGQGESQ 660 (1491)
Q Consensus 621 l~~-h~~~VtslafSPDG~~LAsg--s~--DG~I~IWdl~tG~~~ 660 (1491)
+.. ..+.|..+...+++..|... +- -++|+.||+.+++..
T Consensus 365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 443 34456666666777766543 22 468999999888753
No 359
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.54 E-value=0.11 Score=66.14 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=93.4
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-------------------------
Q 000454 251 FDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS------------------------- 304 (1491)
Q Consensus 251 FSpDG~~LATG-S~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS------------------------- 304 (1491)
++|||+.|... -..+.+.+.|.++.+...++.-- +....++++++|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 44555544222 22455666666666555554421 2334455566666555543
Q ss_pred ---------------CCCeEEEEECCC----C-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCc
Q 000454 305 ---------------NDCIIRVWRLPD----G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 305 ---------------~DGtIrVWDl~t----g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~ 364 (1491)
.++.|.|.|..+ + ..+..+. -......|.++||++ +.++++..+.+|.|.|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhh
Confidence 234577777776 3 3333333 445678899999998 3556666799999999987553
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 365 ~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
...-.+ .+...+.. ...-.-.....+|.++|..+.+-..|..|..|++.+
T Consensus 356 ~~~~~~-~~~~~vva--------evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKI-KPRDAVVA--------EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccC-CccceEEE--------eeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 211000 00000000 001133456788999999888888999999999964
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=1.3 Score=54.40 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=129.4
Q ss_pred cceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 393 HQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 393 ~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
.....+++++.+. .+++...+..|.+.|..+.. ...... -......+++++++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---------~~~~~~-vG~~P~~~~~~~~~---------------- 127 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---------VLGSIP-VGLGPVGLAVDPDG---------------- 127 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccc---------eeeEee-eccCCceEEECCCC----------------
Confidence 4456788888887 45555566899999965421 111111 11145567777765
Q ss_pred ccccccccCCCeEEEEe--CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 472 PKFKNSWFCHDNIVTCS--RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS--~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
+...++-. .++++.+.|..+.+.. ........+ ..++++
T Consensus 128 ---------~~vYV~n~~~~~~~vsvid~~t~~~~-----------------------------~~~~vG~~P-~~~a~~ 168 (381)
T COG3391 128 ---------KYVYVANAGNGNNTVSVIDAATNKVT-----------------------------ATIPVGNTP-TGVAVD 168 (381)
T ss_pred ---------CEEEEEecccCCceEEEEeCCCCeEE-----------------------------EEEecCCCc-ceEEEC
Confidence 22344444 3678888877764311 111111122 779999
Q ss_pred CCCCEEEEEe-ccceEEEEECCCCceEE-E----EeCCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCCceEEE-
Q 000454 550 LDNRFVLAAI-MDCRICVWNAADGSLVH-S----LTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDIWEGIPIRI- 620 (1491)
Q Consensus 550 PDG~~LaSGs-~DG~IrIWDl~tgkll~-t----L~gHs~~VtsLafSPdd~~lLaSgS~D--GtIrIWDl~tGk~l~~- 620 (1491)
|+|..++++. .++.|.+.|..+..... . +.-. ..-..+.+.|++.++.++...+ +.+.+.|..++.....
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 9999777665 78899999977665553 1 2112 2236788999666666555554 6999999988887776
Q ss_pred EeeCCcceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcccc
Q 000454 621 YEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTGQGESQK 661 (1491)
Q Consensus 621 l~~h~~~VtslafSPDG~~LAsgs~-DG~I~IWdl~tG~~~~ 661 (1491)
+.........+.++|+|+++.+... .+.+.+.|..+.....
T Consensus 248 ~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 248 LPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred cccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 2222214567899999999988744 4889999987766544
No 361
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.42 E-value=6 Score=52.82 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=73.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC--------eEEEEEc----------------CCCCEEEEEECCCeEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--------ITDLAVS----------------SNNALVASASNDCIIR 310 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~--------VtsLafS----------------PDG~lLASGS~DGtIr 310 (1491)
+..|..++.++.|.-.|..||+.+..+...... ...+++. .++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788899999999999998877532210 1122221 1344788888999999
Q ss_pred EEECCCCCceeeeccCCCceE-------------EEEecCC--CCceEEEEEEeC----------CCcEEEEccCCCCcc
Q 000454 311 VWRLPDGLPISVLRGHTAAVT-------------AIAFSPR--PGSVYQLLSSSD----------DGTCRIWDARYSQFS 365 (1491)
Q Consensus 311 VWDl~tgk~i~~L~gHs~~Vt-------------sLaFSPd--g~s~~~LaSgS~----------DGtVrIWDl~tg~~~ 365 (1491)
-.|..+|+.+..+.. .+.|. .+.-.|- +. .+++++. +|.|+-+|+.+|+.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999998876642 22211 1111110 11 4566642 688999999999988
Q ss_pred ceeec
Q 000454 366 PRIYI 370 (1491)
Q Consensus 366 ~~i~~ 370 (1491)
-.+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 88764
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.40 E-value=0.39 Score=55.31 Aligned_cols=171 Identities=10% Similarity=0.114 Sum_probs=98.5
Q ss_pred EEEEccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~Tg~~l~tL~gH-~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
.+.|.|-...|..|+|+|+.. ++|+....+.|...+. +|+.++.+.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456777777899999999866 4555566788888886 48888887633 46789999998887777665689999998
Q ss_pred CCCCC-c--e---eeec-----cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC---CCccceeecCCCCCcccC
Q 000454 314 LPDGL-P--I---SVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY---SQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 314 l~tgk-~--i---~~L~-----gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t---g~~~~~i~~~~~~~~~~g 379 (1491)
+.... . . ..+. .+...+-.|+|.|.++ .|+.+-......||.+.. .......... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~----~~-- 163 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ----DL-- 163 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE-H----HH--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeecccc----cc--
Confidence 84321 1 1 1111 2445689999999877 666777777777776654 1111111000 00
Q ss_pred CCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCC
Q 000454 380 RNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 380 ~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~ 422 (1491)
.........+..++++|. |.+++.......|.++|..
T Consensus 164 ------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 164 ------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp ------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred ------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 001113345788899885 5667777778888888853
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.39 E-value=1.7 Score=50.27 Aligned_cols=256 Identities=14% Similarity=0.156 Sum_probs=128.1
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 295 SNNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
..++.|+.|+.+| |.++++.. ........ ...|..+...|+-+ .|++-+ |+.|.++++..-....... +..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---~llvLs-d~~l~~~~L~~l~~~~~~~-~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---LLLVLS-DGQLYVYDLDSLEPVSTSA-PLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---EEEEEc-CCccEEEEchhhccccccc-ccc
Confidence 3577899999998 89999833 33333332 33499999999865 455544 4999999987654333210 000
Q ss_pred CCcccCCCCCCCCCCCCCCcceEEEE--ECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC-ceeeeecCCCCCceEEE
Q 000454 374 SDAVAGRNMAPSSSAGPQSHQIFCCA--FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN-HEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~V~sla--fSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~-~~i~~l~gH~~~V~sVa 450 (1491)
................+..++ -...+...++......|.+|....... .. .....+.- ...+..++
T Consensus 77 -----~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~-----~f~~~~ke~~l-p~~~~~i~ 145 (275)
T PF00780_consen 77 -----FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN-----SFSKLLKEISL-PDPPSSIA 145 (275)
T ss_pred -----ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc-----cccceeEEEEc-CCCcEEEE
Confidence 000000000111222344444 122333333334445888888754211 01 22333322 36677888
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (1491)
|.+ +.++.|..++ ..+.|+.++.......... ..
T Consensus 146 ~~~----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~-----------------~~ 179 (275)
T PF00780_consen 146 FLG----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSD-----------------SS 179 (275)
T ss_pred EeC----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccC-----------------Cc
Confidence 874 3666666554 6677877543211100000 00
Q ss_pred CCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~--tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
...........++..+.+. ++.+|++- +..-.+.|. .|+..+ .+.- ......+++.. + +|+..+ ++.|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~~--p-yli~~~-~~~iE 250 (275)
T PF00780_consen 180 SSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYSS--P-YLIAFS-SNSIE 250 (275)
T ss_pred chhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEEEC--C-EEEEEC-CCEEE
Confidence 0001111122334444443 45666643 333333443 454443 3322 22345566643 3 444344 46699
Q ss_pred EEeCCCCceEEEEeeC
Q 000454 609 VWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 609 IWDl~tGk~l~~l~~h 624 (1491)
||++.+|++++.+...
T Consensus 251 V~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 251 VRSLETGELVQTIPLP 266 (275)
T ss_pred EEECcCCcEEEEEECC
Confidence 9999999999988743
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.38 E-value=0.0097 Score=44.72 Aligned_cols=39 Identities=36% Similarity=0.632 Sum_probs=35.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
+.++..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.014 Score=72.19 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=79.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT-DLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~Vt-sLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
..|.-+.|+|.-..||++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999999999999988 888888887777777 999999999999999999999999999877765
Q ss_pred e-ccCCCceEEEEecC
Q 000454 323 L-RGHTAAVTAIAFSP 337 (1491)
Q Consensus 323 L-~gHs~~VtsLaFSP 337 (1491)
+ ..-...|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3 22446677777764
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.19 E-value=0.23 Score=49.82 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=72.3
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 246 VYCAIFDR---SG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 246 Vt~VaFSp---DG-~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
|+++++.. || ..|+.|++|..|+||+-. ..+..+.. ...|++++-... ..++.+..+|+|-||+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666655 33 589999999999999854 66667664 566778777665 57889999999999974 34445
Q ss_pred eeccCCCceEEEEec-CCCCceEEEEEEeCCCcEEE
Q 000454 322 VLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFS-Pdg~s~~~LaSgS~DGtVrI 356 (1491)
..+.... ++++++. .++.....|++|-.+|.|-+
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5553333 5555544 34434457999999997743
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.17 E-value=0.16 Score=62.40 Aligned_cols=253 Identities=12% Similarity=0.085 Sum_probs=124.5
Q ss_pred ceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEE
Q 000454 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1491)
Q Consensus 329 ~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~La 408 (1491)
.|+.|.|.++.. -|+++...|.|.||.+...+....-.. ..-..+.+.+ +
T Consensus 3 ~v~~vs~a~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~----------------------~~~~~~~~~~----~- 52 (395)
T PF08596_consen 3 SVTHVSFAPETL---ELAVGLESGEVVLFKFGKNQNYGNREQ----------------------PPDLDYNFRR----F- 52 (395)
T ss_dssp -EEEEEEETTTT---EEEEEETTS-EEEEEEEE----------------------------------------S------
T ss_pred eEEEEEecCCCc---eEEEEccCCcEEEEEcccCCCCCccCC----------------------CcccCccccc----c-
Confidence 488999999976 899999999999998865443220000 0000000000 0
Q ss_pred EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
...++.-.+-|+.........+...+...+....+.|++++.+.-| .++.|.
T Consensus 53 -~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---------------------------Fvaigy 104 (395)
T PF08596_consen 53 -SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---------------------------FVAIGY 104 (395)
T ss_dssp --GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---------------------------EEEEEE
T ss_pred -cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---------------------------EEEEEe
Confidence 0001111122332111100011133445556668999999998765 899999
Q ss_pred CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-----CC---CEEEEEec
Q 000454 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-----DN---RFVLAAIM 560 (1491)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-----DG---~~LaSGs~ 560 (1491)
.+|.+.|.|++....+.. ....- ..........|+++.|+- |+ -.+++|+.
T Consensus 105 ~~G~l~viD~RGPavI~~-----~~i~~----------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 105 ESGSLVVIDLRGPAVIYN-----ENIRE----------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp TTSEEEEEETTTTEEEEE-----EEGGG------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEEEEECCCCeEEee-----ccccc----------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 999999999986442211 00000 000111234567777752 33 46888999
Q ss_pred cceEEEEECCC---CceE----EEEeCCCCCeEEEE-EecC--------------------CCcEEEEEeCCCcEEEEeC
Q 000454 561 DCRICVWNAAD---GSLV----HSLTGHTESTYVLD-VHPF--------------------NPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 561 DG~IrIWDl~t---gkll----~tL~gHs~~VtsLa-fSPd--------------------d~~lLaSgS~DGtIrIWDl 612 (1491)
.|.+.+|.+.- +... .....+.+.|..|. |..+ -+.+++.+ .+..|+|+..
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~ 242 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKP 242 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-T
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeC
Confidence 99999998741 2222 22224556666655 3221 01244434 4667999999
Q ss_pred CCCceEEEEeeCCcceEEEEE-----cCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 613 WEGIPIRIYEISRFRLVDGKF-----SPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~Vtslaf-----SPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
.+.+..............+.+ ...+..|++-..+|.|+++.+..-+.+.
T Consensus 243 ~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 243 PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 888877665522223334455 2367778888999999999997755543
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.05 E-value=1.3 Score=52.66 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCeeEEEEcCCCCEEEEEec-cceEEEEECCC--C----ce-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--G----SL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIVW 610 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~-DG~IrIWDl~t--g----kl-l~tL~gHs~~VtsLafSPdd~~lLaSgS~DG-tIrIW 610 (1491)
-..-+.|+||||++.|+.+.. .+.|+-|++.. + +. ...+....+..-.++... ++.+.+++..+| .|.+|
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence 445678999999988877765 47888887752 1 11 112222334444555655 445554444444 89999
Q ss_pred eCCCCceEEEEeeCCcceEEEEE-cCCCCEEEEEeC
Q 000454 611 DIWEGIPIRIYEISRFRLVDGKF-SPDGASIILSDD 645 (1491)
Q Consensus 611 Dl~tGk~l~~l~~h~~~Vtslaf-SPDG~~LAsgs~ 645 (1491)
+.. |+++..+......+++++| .|+.+.|.+++.
T Consensus 241 ~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 997 9999999877678888888 456666665544
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.86 E-value=1.2 Score=55.65 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=69.6
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEE-cc
Q 000454 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW-DA 359 (1491)
Q Consensus 281 L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW-Dl 359 (1491)
+.........|.++|+|++++.+ .+|...|+.....+... .+.-..++|.+.+ .+++-...+.|.|+ ++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----RYAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----EEEEE-TTS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----cEEEEECCCeEEEEEcC
Confidence 33445568899999999999885 47788888733322221 2345568899854 57777778889996 44
Q ss_pred CCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee
Q 000454 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 360 ~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1491)
. ......+.. ...+..+-. |.+|+..+.+ .|.+||+.+ ...+..+
T Consensus 98 ~-~~~~k~i~~---------------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~---------~~~i~~i 142 (443)
T PF04053_consen 98 K-NEVVKSIKL---------------------PFSVEKIFG---GNLLGVKSSD-FICFYDWET---------GKLIRRI 142 (443)
T ss_dssp E-E-TT--------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----------EEEEE
T ss_pred c-cccceEEcC---------------------CcccceEEc---CcEEEEECCC-CEEEEEhhH---------cceeeEE
Confidence 2 222222211 111233322 8877777655 899999975 4455555
Q ss_pred cCCCCCceEEEEccCc
Q 000454 440 SGHENDVNYVQFSGCA 455 (1491)
Q Consensus 440 ~gH~~~V~sVafSpdg 455 (1491)
... .|..|.|++++
T Consensus 143 ~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 143 DVS--AVKYVIWSDDG 156 (443)
T ss_dssp SS---E-EEEEE-TTS
T ss_pred ecC--CCcEEEEECCC
Confidence 533 38999999886
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.78 E-value=0.29 Score=63.25 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=87.3
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---------
Q 000454 244 NAVYCAIFDRSGRYVITGS------DDR--LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--------- 306 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS------~DG--tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D--------- 306 (1491)
..|...+++|||+.+|..- .|. .|.+++.. +.......+. ..+.-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999987665 244 45555542 3332223332 38889999999988877532
Q ss_pred ---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE---EccCCCCccceeecCCCCCcccCC
Q 000454 307 ---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI---WDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 307 ---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI---WDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+.+.+..+..+.... ...+.|..+.|+|||. +|+... +|.|.+ -....|. ..+.. +
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~--~------- 488 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGV---RAAMII-GGKVYLAVVEQTEDGQ--YALTN--P------- 488 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCC---EEEEEE-CCEEEEEEEEeCCCCc--eeecc--c-------
Confidence 233333444333322 2356799999999998 555444 466666 3333332 11100 0
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeC
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
..........+..+.|..++.++ ++..++...+|.+
T Consensus 489 ----~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 489 ----REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ----EEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 00001122335778999999855 5555555555654
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.033 Score=69.14 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV-DGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vt-slafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
..|.-+.|+| .-.++|++..+|.|.+..+. .+.++++..+...++ +++|.|||+.||+|-.||+|.+-|+.+|..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3477889999 67899999999999999996 889999987777777 99999999999999999999999999987765
Q ss_pred c
Q 000454 662 D 662 (1491)
Q Consensus 662 ~ 662 (1491)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 4
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.51 Score=58.01 Aligned_cols=137 Identities=11% Similarity=0.126 Sum_probs=94.9
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CC-ceeeeccCC--
Q 000454 259 ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA-------LVASASNDCIIRVWRLPD-GL-PISVLRGHT-- 327 (1491)
Q Consensus 259 ATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~-------lLASGS~DGtIrVWDl~t-gk-~i~~L~gHs-- 327 (1491)
.++.....|+-.|++.|+.+..+.-|.. |.-+.+.|+.+ .-+.|-.+..|+-||.+- +. .+...++|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3445556688889999999999987766 88888888754 123455677899999863 22 233333332
Q ss_pred --CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 328 --AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 328 --~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
....|++-..+| ++++|+.+|.|++||- .+....+. ..+.+..|..+..+.+|+
T Consensus 429 ~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdr-i~~~AKTA-------------------lPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 429 TKNNFSCFATTESG----YIVVGSLKGDIRLYDR-IGRRAKTA-------------------LPGLGDAIKHVDVTADGK 484 (644)
T ss_pred cccccceeeecCCc----eEEEeecCCcEEeehh-hhhhhhhc-------------------ccccCCceeeEEeeccCc
Confidence 345566666665 7999999999999996 33322221 234677899999999999
Q ss_pred EEEEecCCceEEEEeC
Q 000454 406 VFVTGSSDTLARVWNA 421 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl 421 (1491)
+|++.+ +..+.+.++
T Consensus 485 wil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 485 WILATC-KTYLLLIDT 499 (644)
T ss_pred EEEEec-ccEEEEEEE
Confidence 988665 566666665
No 373
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.40 E-value=3.7 Score=49.50 Aligned_cols=73 Identities=18% Similarity=0.064 Sum_probs=44.3
Q ss_pred EEeCCCCCeEEEEEecC------CCcEEEEEeCCCcEEEEeCCCCceEEEE---e-eCCcceEEEEEcCCCCEEEEEeCC
Q 000454 577 SLTGHTESTYVLDVHPF------NPRIAMSAGYDGKTIVWDIWEGIPIRIY---E-ISRFRLVDGKFSPDGASIILSDDV 646 (1491)
Q Consensus 577 tL~gHs~~VtsLafSPd------d~~lLaSgS~DGtIrIWDl~tGk~l~~l---~-~h~~~VtslafSPDG~~LAsgs~D 646 (1491)
.+..| ..+..+.|-.. .+.++++.-..+.|....+..+..+... . .....+.+|++.|||.++++.+.+
T Consensus 248 ~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 248 AYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34434 45677777642 2346655555667888787655433222 2 223378999999999999998888
Q ss_pred CcEE
Q 000454 647 GQLY 650 (1491)
Q Consensus 647 G~I~ 650 (1491)
|.|+
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 9875
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.35 E-value=4.4 Score=48.32 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=127.4
Q ss_pred EEcCCCC-EEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeec
Q 000454 292 AVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 292 afSPDG~-lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
.|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+. .|+++. .| +.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g---~Lv~~~-~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGG---RLIACE-HG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCC---eEEEEc-cc-cEEEeccCCceeEEecc
Confidence 4666666 444545567888888776643 2333 233344444444443 454444 33 66777655554222211
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC---------CceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---------DTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~---------DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
.. ........+.+...|+|.+.++... -..-.||.+.. .......+..
T Consensus 104 ~~---------------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--------~g~~~~l~~~ 160 (307)
T COG3386 104 PE---------------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--------DGGVVRLLDD 160 (307)
T ss_pred cc---------------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--------CCCEEEeecC
Confidence 10 0112244567777888876655433 00113343321 1334555555
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
+-..-+.|+|+|++ ..++++=+..+.|..|++..... ..
T Consensus 161 ~~~~~NGla~SpDg-------------------------~tly~aDT~~~~i~r~~~d~~~g--~~-------------- 199 (307)
T COG3386 161 DLTIPNGLAFSPDG-------------------------KTLYVADTPANRIHRYDLDPATG--PI-------------- 199 (307)
T ss_pred cEEecCceEECCCC-------------------------CEEEEEeCCCCeEEEEecCcccC--cc--------------
Confidence 56667789999986 22445555567777776652000 00
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc-eEEEEECCCCceEEEEeCCCCCeEEEEEecC-CCcEEE
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHPF-NPRIAM 599 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG-~IrIWDl~tgkll~tL~gHs~~VtsLafSPd-d~~lLa 599 (1491)
.............+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.-+...+++++|--. ...+++
T Consensus 200 ------~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 200 ------GGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ------CCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 00000111112334455678888998886665554 99999998 9999999887777888888432 234444
Q ss_pred EEe
Q 000454 600 SAG 602 (1491)
Q Consensus 600 SgS 602 (1491)
|+.
T Consensus 273 Ts~ 275 (307)
T COG3386 273 TSA 275 (307)
T ss_pred Eec
Confidence 444
No 375
>PRK10115 protease 2; Provisional
Probab=95.33 E-value=15 Score=48.69 Aligned_cols=113 Identities=5% Similarity=-0.007 Sum_probs=68.8
Q ss_pred CCEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC------CeEEEE
Q 000454 244 NAVYCAIFDRSGRYVITGSD-----DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND------CIIRVW 312 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~-----DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D------GtIrVW 312 (1491)
-.+..+.++|||++||.+.+ ...|+|-|+.+|..+...-.... ..++|.+|++.|+....+ ..|.+|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 35677889999999987643 23799999998864433221221 569999999866665442 368888
Q ss_pred ECCCC--CceeeeccCCCceE-EEEecCCCCceEEEEEE--eCCCcEEEEccC
Q 000454 313 RLPDG--LPISVLRGHTAAVT-AIAFSPRPGSVYQLLSS--SDDGTCRIWDAR 360 (1491)
Q Consensus 313 Dl~tg--k~i~~L~gHs~~Vt-sLaFSPdg~s~~~LaSg--S~DGtVrIWDl~ 360 (1491)
++.++ +....+........ .+..+.++.. .++.+ ..++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~--l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHY--VVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCE--EEEEEECCccccEEEEECc
Confidence 88887 33444543333333 2333436552 23222 233568888853
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.29 E-value=3.7 Score=47.43 Aligned_cols=256 Identities=12% Similarity=0.111 Sum_probs=137.7
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCc-EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGT-CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGt-VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~ 406 (1491)
.....|+|+|... ..++.+-.-|+ ..++|..+.+....+..... ....-.-.|+|||.+
T Consensus 68 aR~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~------------------RHfyGHGvfs~dG~~ 127 (366)
T COG3490 68 ARGHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG------------------RHFYGHGVFSPDGRL 127 (366)
T ss_pred cccCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccC------------------ceeecccccCCCCcE
Confidence 3345678888754 35666666666 46789888876666532211 111223478999999
Q ss_pred EEEecC-----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 407 FVTGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 407 LasGs~-----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
|.+.-. .|.|-|||.+.. ...+..+..|.-.-..+.|.++|
T Consensus 128 LYATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG-------------------------- 173 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG-------------------------- 173 (366)
T ss_pred EEeecCCCCCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC--------------------------
Confidence 987644 378999999742 44566777777777778888876
Q ss_pred CeEEEEeCCCeEEEE-ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce--ecc--CCCCCeeEEEEcCCCCEEE
Q 000454 482 DNIVTCSRDGSAIIW-IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ--RIL--PTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIW-Dl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~l~--~h~~~VtsVafSPDG~~La 556 (1491)
..++.+ +|-|..- |+...+ -.+.....++. ......+..+. .+. .+...|..++..+||+.++
T Consensus 174 rtlvva--nGGIethpdfgR~~--lNldsMePSlv--------lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 174 RTLVVA--NGGIETHPDFGRTE--LNLDSMEPSLV--------LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred cEEEEe--CCceecccccCccc--cchhhcCccEE--------EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 222222 1222222 111000 00000000000 00000011110 111 2344578888888887666
Q ss_pred EEeccce-----EEEEECCCCceEEEEeC-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 557 AAIMDCR-----ICVWNAADGSLVHSLTG-------HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 557 SGs~DG~-----IrIWDl~tgkll~tL~g-------Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
.+-..|- -.|=-...|+.+.-+.. ...-|-+|+.+-.++.+.+|.-..+...|||..+|..+..-...
T Consensus 242 gcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~ 321 (366)
T COG3490 242 GCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP 321 (366)
T ss_pred EEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc
Confidence 5432221 11111223333333321 12346678887766777777777788999999999887654311
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 625 RFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 625 ~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
. +.-.-+...-+++.+.+|.+.++.
T Consensus 322 d----aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 322 D----AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred c----cccceeccCceEEecCCceEEecc
Confidence 1 122234445567777778888774
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.26 E-value=1.4 Score=57.12 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC-CcE
Q 000454 284 HEGDITDLAVSSNNALVASAS------NDC--IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTC 354 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS------~DG--tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D-GtV 354 (1491)
....+.+.+++|+|+.+|... .|. .|.+++. .+.....+.+ ...+.-.|+|++. .|++.... ..+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCC---ceEEEecCcceE
Confidence 334688999999999887765 243 4555554 2333222333 2378899999976 56655433 223
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEE
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrV 418 (1491)
++.+-.....+..+... +... . ......|..+.|||||..|+... +|.|+|
T Consensus 422 ~v~~~~~~gql~~~~vd-------~ge~--~---~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVD-------ASAV--A---SRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEecc-------Cchh--h---hccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 33332211111111110 0000 0 02345699999999999888765 467766
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.25 E-value=1.2 Score=53.11 Aligned_cols=142 Identities=11% Similarity=0.127 Sum_probs=89.5
Q ss_pred CCEEEEEeC----------CCeEEEEECCCC----eEEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 255 GRYVITGSD----------DRLVKIWSMETA----YCLASC--RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 255 G~~LATGS~----------DGtIrIWDl~Tg----~~l~tL--~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
-.+||.|.. .|.|.++++... ..+..+ ....++|++|+-- ++ +|+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 467777742 299999999884 122222 2357889999876 44 455544 4789999998777
Q ss_pred -ceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC-CccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 319 -PISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 319 -~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg-~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
.+..-. .....|.++....+ +++.|..-..|.++.+... ..+..+. .......+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-----~I~vgD~~~sv~~~~~~~~~~~l~~va------------------~d~~~~~v 175 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-----YILVGDAMKSVSLLRYDEENNKLILVA------------------RDYQPRWV 175 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-----EEEEEESSSSEEEEEEETTTE-EEEEE------------------EESS-BEE
T ss_pred cchhhheecceEEEEEEecccc-----EEEEEEcccCEEEEEEEccCCEEEEEE------------------ecCCCccE
Confidence 332222 12236666666644 7889988888888755431 1111110 01135568
Q ss_pred EEEEECCCCCEEEEecCCceEEEEeCC
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 396 ~slafSPDG~~LasGs~DG~IrVWDl~ 422 (1491)
+++.|-+++..++++..+|.|.++...
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 899998777899999999999999885
No 379
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.23 E-value=1.2 Score=53.20 Aligned_cols=216 Identities=9% Similarity=0.092 Sum_probs=118.0
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE---EECCC----CCEEEEecC----------Cce
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC---AFNAN----GTVFVTGSS----------DTL 415 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl---afSPD----G~~LasGs~----------DG~ 415 (1491)
.|++.|..+.+.+..+.++ ....+.++ .|..+ -.+|++|+. .|.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~-------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE-------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE-------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred EEEEEeCCCCeEEEEEECC-------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 5778887777766665443 22334433 34332 467777753 289
Q ss_pred EEEEeCCCCCCCCCCCCCceeee--ecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDV--LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~--l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
|.+|++... ......+.. -....++|++++... ..|+ ++..+.|
T Consensus 64 i~v~~i~~~-----~~~~~~l~~i~~~~~~g~V~ai~~~~----------------------------~~lv-~~~g~~l 109 (321)
T PF03178_consen 64 ILVFEISES-----PENNFKLKLIHSTEVKGPVTAICSFN----------------------------GRLV-VAVGNKL 109 (321)
T ss_dssp EEEEEECSS----------EEEEEEEEEESS-EEEEEEET----------------------------TEEE-EEETTEE
T ss_pred EEEEEEEcc-----cccceEEEEEEEEeecCcceEhhhhC----------------------------CEEE-EeecCEE
Confidence 999999652 000112221 123467788877652 2544 3445899
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-C
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-G 572 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-g 572 (1491)
.+|++...+.... .........+.++.. .+.+|++|.....|.++.... +
T Consensus 110 ~v~~l~~~~~l~~---------------------------~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 110 YVYDLDNSKTLLK---------------------------KAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEEETTSSEEE---------------------------EEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEEccCcccchh---------------------------hheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccC
Confidence 9999886430000 011112224555544 366999999888888775433 3
Q ss_pred ceEEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------Cc--e--EEEEeeCCcceEEE---EEcC-
Q 000454 573 SLVHSLT--GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------GI--P--IRIYEISRFRLVDG---KFSP- 635 (1491)
Q Consensus 573 kll~tL~--gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-------Gk--~--l~~l~~h~~~Vtsl---afSP- 635 (1491)
..+..+. .....++++.|-+++ ..++.+..+|.|.++.... +. + +..+. ....|+++ ++.|
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~ 238 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPR 238 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--
T ss_pred CEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeec
Confidence 3233332 234468888888645 5788899999999998752 22 2 23333 23456666 5555
Q ss_pred -CCC------EEEEEeCCCcEEEE
Q 000454 636 -DGA------SIILSDDVGQLYIL 652 (1491)
Q Consensus 636 -DG~------~LAsgs~DG~I~IW 652 (1491)
.+. .++.++.+|.|.+.
T Consensus 239 ~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 239 SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCCcccccceEEEEecCCEEEEE
Confidence 222 47888889998844
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=0.034 Score=72.38 Aligned_cols=102 Identities=22% Similarity=0.376 Sum_probs=77.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYC-LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~-l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vts 332 (1491)
.+..+|.|++.|.|-..|+...-. +..=..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788999999999888764311 1111234679999999999999999999999999999999999999888777666
Q ss_pred EEec---CCCCceEEEEEEeCCCcEEEEccC
Q 000454 333 IAFS---PRPGSVYQLLSSSDDGTCRIWDAR 360 (1491)
Q Consensus 333 LaFS---Pdg~s~~~LaSgS~DGtVrIWDl~ 360 (1491)
+-+. .++. .++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS---~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNS---KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence 6543 3333 6888887776 67654
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.20 E-value=1 Score=59.46 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=96.6
Q ss_pred CCEEEEE-ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCc----eEEEEEEeCCCcEEEEccCCCCccceeecC
Q 000454 297 NALVASA-SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS----VYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1491)
Q Consensus 297 G~lLASG-S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s----~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~ 371 (1491)
.++|+.- .....|+-.|+..|+.+..+..|... .-..|.|+.+. ....+.|-.+..|..||.+-.. ...+..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~- 569 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDS- 569 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCC-Cceeec-
Confidence 3444443 34577899999999999999877643 23344443210 0135667777889999998532 111100
Q ss_pred CCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEE
Q 000454 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451 (1491)
Q Consensus 372 ~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVaf 451 (1491)
............|++-+.+| +||+|+.+|.||+||--. ......+.+-..+|.+|..
T Consensus 570 -------------~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---------~~AKT~lp~lG~pI~~iDv 626 (794)
T PF08553_consen 570 -------------QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---------KRAKTALPGLGDPIIGIDV 626 (794)
T ss_pred -------------cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---------hhhhhcCCCCCCCeeEEEe
Confidence 00011244567888888777 689999999999999421 2233456677889999999
Q ss_pred ccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
+.+| ..+.+..+..|.+++..
T Consensus 627 t~DG---------------------------kwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 627 TADG---------------------------KWILATCKTYLLLIDTL 647 (794)
T ss_pred cCCC---------------------------cEEEEeecceEEEEEEe
Confidence 9987 44455556778888764
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.07 E-value=0.9 Score=45.72 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=68.6
Q ss_pred eeEEEEcC---CC-CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 543 VNMIVWSL---DN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 543 VtsVafSP---DG-~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
|+++++.. || .-|++|+.|..|+||+- ...+..+.. .+.|++++-.. ...++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 45565544 33 47999999999999984 466777664 45577777665 355667889999999975 5556
Q ss_pred EEEeeCCcceEEEEEcC-C--C-CEEEEEeCCCcEEE
Q 000454 619 RIYEISRFRLVDGKFSP-D--G-ASIILSDDVGQLYI 651 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSP-D--G-~~LAsgs~DG~I~I 651 (1491)
+..+..+ .++++++.. + | .-|++|-.+|.|-+
T Consensus 75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 6666333 466665443 3 2 36888888888743
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=0.19 Score=65.97 Aligned_cols=71 Identities=23% Similarity=0.443 Sum_probs=58.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEE---EcCCCCEEEEEECCCeEEEEEC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA---VSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLa---fSPDG~lLASGS~DGtIrVWDl 314 (1491)
-.++|+|++|+.+|++++.|-.+|.|.+||+.+++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 457999999999999999999999999999999999999887766655554 4446667888877775 6654
No 384
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.46 E-value=26 Score=47.04 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCCCeEEEEEcCCC------CEEEEEECCCeEEEEECCCCCceeeec--cCCCceEEEEecCCCC------ceEEEEEEe
Q 000454 284 HEGDITDLAVSSNN------ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPG------SVYQLLSSS 349 (1491)
Q Consensus 284 H~~~VtsLafSPDG------~lLASGS~DGtIrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~------s~~~LaSgS 349 (1491)
-...|.|+++.++. ++++.++.|+++++..+.-..++..+. +-..++.++.+-+... ...+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 35678999998865 589999999999999987665555543 4445555555544321 124677888
Q ss_pred CCCcEEEE
Q 000454 350 DDGTCRIW 357 (1491)
Q Consensus 350 ~DGtVrIW 357 (1491)
.+|.+.-+
T Consensus 661 ~NGvllR~ 668 (1205)
T KOG1898|consen 661 RNGVLLRF 668 (1205)
T ss_pred cccEEEEE
Confidence 88876544
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.38 E-value=26 Score=46.74 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=75.9
Q ss_pred CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecC--CCc---EEEEEeCCCcEEEEe-CCC
Q 000454 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPF--NPR---IAMSAGYDGKTIVWD-IWE 614 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPd--d~~---lLaSgS~DGtIrIWD-l~t 614 (1491)
.++..+.+.+...++.++.++.+...++..+.+.... ..-...|.|+.++|. ++. +++.|.++..+.+.- +.+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 4555555666677888888888888888776633222 123457899999975 334 888888776655443 334
Q ss_pred CceEEEEee----CCcceEEEEEcCCCCEEEEEeCCCcEEEE--ECCCCcc
Q 000454 615 GIPIRIYEI----SRFRLVDGKFSPDGASIILSDDVGQLYIL--NTGQGES 659 (1491)
Q Consensus 615 Gk~l~~l~~----h~~~VtslafSPDG~~LAsgs~DG~I~IW--dl~tG~~ 659 (1491)
...+..... -...|.-.+|--|+.+|.++..||.+..| |..+|..
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 443333321 12245566777789999999999988654 5566654
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.35 E-value=8.9 Score=45.66 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=81.5
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEcc-C
Q 000454 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-R 360 (1491)
Q Consensus 282 ~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl-~ 360 (1491)
..-.+.+..+..++||++++++.....+.-|+--...-...-+.-...|..|.|.|++. |......|.|++=+. .
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~----lw~~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN----LWMLARGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEEEETTTEEEEEE-TT
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC----EEEEeCCcEEEEccCCC
Confidence 34567899999999999999887666667887432222222233467899999999975 444558888888761 1
Q ss_pred CCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec
Q 000454 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1491)
Q Consensus 361 tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~ 440 (1491)
....-..- ..........+..++|.+++...|+|+.. .+ +.....+ ...+......
T Consensus 217 ~~~~w~~~----------------~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgG------ktW~~~~~~~ 272 (302)
T PF14870_consen 217 DGETWSEP----------------IIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGG------KTWQKDRVGE 272 (302)
T ss_dssp EEEEE-------------------B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTT------SS-EE-GGGT
T ss_pred Cccccccc----------------cCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCC------ccceECcccc
Confidence 11100000 00111234558999999998888877654 33 2333222 2233433334
Q ss_pred CCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEE
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1491)
Q Consensus 441 gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIW 496 (1491)
.-...++.|.|.+. +.-+..+.+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~---------------------------~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNP---------------------------DKGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEET---------------------------TEEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcCC---------------------------CceEEECCCcEEEEe
Confidence 44556777877643 356666788887665
No 387
>PHA02713 hypothetical protein; Provisional
Probab=93.91 E-value=2.1 Score=55.29 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCCCEEEEEecc------ceEEEEECCC-Cc--eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceE
Q 000454 550 LDNRFVLAAIMD------CRICVWNAAD-GS--LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIWEGIPI 618 (1491)
Q Consensus 550 PDG~~LaSGs~D------G~IrIWDl~t-gk--ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl~tGk~l 618 (1491)
-+|+..++|+.+ ..+..||..+ .+ .+..+.........+++ ++++.+.||.|| .+..||+.+.+-.
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCccccccc
Confidence 357777777654 2467899876 33 33344333333333333 678888999998 6777777665533
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=2.9 Score=48.34 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=67.7
Q ss_pred EEEEEcCCC-CEEEEEeCCCe-EEEEECCCCeEEEEEecCCCC--eEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 000454 247 YCAIFDRSG-RYVITGSDDRL-VKIWSMETAYCLASCRGHEGD--ITDLAVSSNNALVASASND-----CIIRVWRLPDG 317 (1491)
Q Consensus 247 t~VaFSpDG-~~LATGS~DGt-IrIWDl~Tg~~l~tL~gH~~~--VtsLafSPDG~lLASGS~D-----GtIrVWDl~tg 317 (1491)
..|+|+|.- +-++.+-.-|+ ..++|..+++...++...++. .-.=.|||||.+|...-.| |.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 357788854 44566655554 567888887776665422111 1122599999999876443 78999998754
Q ss_pred -CceeeeccCCCceEEEEecCCCCceEEEEEE
Q 000454 318 -LPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 318 -k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg 348 (1491)
+.+..+..|.-.-..+.|.+|+. .|+.+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGr---tlvva 179 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGR---TLVVA 179 (366)
T ss_pred cceecccccCCcCcceeEEecCCc---EEEEe
Confidence 55677888887788999999997 55554
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.81 E-value=3.2 Score=48.06 Aligned_cols=170 Identities=9% Similarity=-0.037 Sum_probs=97.5
Q ss_pred cceeEEEEccCC-CCEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEECCC
Q 000454 232 KMQNIKRVRGHR-NAVYCAIFDRSGRYVITGSDDR--LVKIWSMETAYCLASCRGHE-GDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 232 t~k~v~tL~GH~-~~Vt~VaFSpDG~~LATGS~DG--tIrIWDl~Tg~~l~tL~gH~-~~VtsLafSPDG~lLASGS~DG 307 (1491)
.++.++++.... .-...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-.. ----.|++.. +++..-.=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCC
Confidence 355666665322 3456788878888888887766 79999999999876654221 1122333332 23333334578
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
...+||..+.+.+..+. ..+.=+.++ .++. .|+.......|.++|..+-+....+.+.....
T Consensus 111 ~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~---~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------------ 172 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGK---RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------------ 172 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSS---CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE------------
T ss_pred eEEEEccccceEEEEEe-cCCcceEEE--cCCC---EEEEECCccceEEECCcccceEEEEEEEECCE------------
Confidence 99999999988888876 334556777 3444 57777777889999998877666664421110
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
.-..++-+.|- +|.+.|-.-....|...|..++
T Consensus 173 ---pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 173 ---PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp ---E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred ---ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 11234445553 5555554444455555566553
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.71 E-value=3.4 Score=48.11 Aligned_cols=163 Identities=9% Similarity=0.076 Sum_probs=100.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg--~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
.+.|+-|...+.+...++.. +-+|...=. -..+.+.|-...|.++.|+|+.+.|++......-.||=...|..+.+
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 34444454444444444444 444543211 11122345566699999999999999998888888887788988877
Q ss_pred ecc-CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 323 LRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 323 L~g-Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
+.- .-...-.|.+..++. +.++--.++.+.++.+........+... ..+.......+...-.++|.
T Consensus 123 iPL~g~~DpE~Ieyig~n~---fvi~dER~~~l~~~~vd~~t~~~~~~~~----------~i~L~~~~k~N~GfEGlA~d 189 (316)
T COG3204 123 IPLTGFSDPETIEYIGGNQ---FVIVDERDRALYLFTVDADTTVISAKVQ----------KIPLGTTNKKNKGFEGLAWD 189 (316)
T ss_pred ecccccCChhHeEEecCCE---EEEEehhcceEEEEEEcCCccEEeccce----------EEeccccCCCCcCceeeecC
Confidence 652 123345677777765 6667777888888777655322222110 00001111125667889999
Q ss_pred CCCCEEEEecCCceEEEEeCC
Q 000454 402 ANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~ 422 (1491)
|....|.++-.-.-+.||.+.
T Consensus 190 ~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 190 PVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCCceEEEEEccCCcEEEEEe
Confidence 988888888777777777664
No 391
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=2.9 Score=55.67 Aligned_cols=146 Identities=8% Similarity=-0.035 Sum_probs=86.5
Q ss_pred CcceEEEEECCCCCEEEEec--CCceEEEEeCCCCCCCCCCC--CCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDSDQ--PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs--~DG~IrVWDl~t~~~~~s~~--~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
...|..+...+|+.+.++.. .+-.|.+||+++-....... +.............+.++.|.|.-
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v------------ 167 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV------------ 167 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc------------
Confidence 34566677778877655543 34478999997532211111 111111111223344566676653
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
...++.+..|+.|++..+.... ...........+++++
T Consensus 168 -------------p~n~av~l~dlsl~V~~~~~~~-----------------------------~~v~s~p~t~~~Tav~ 205 (1405)
T KOG3630|consen 168 -------------PLNSAVDLSDLSLRVKSTKQLA-----------------------------QNVTSFPVTNSQTAVL 205 (1405)
T ss_pred -------------cchhhhhccccchhhhhhhhhh-----------------------------hhhcccCcccceeeEE
Confidence 2467778888888887554211 0011123345689999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCC----CCCeEEEEEec
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLDVHP 592 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH----s~~VtsLafSP 592 (1491)
|+|.|+.+++|-..|++.-|-. +++....+.+. ...|.+|+|-.
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred eccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEec
Confidence 9999999999999999988875 34433433221 35788999976
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.55 E-value=3.1 Score=49.40 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=79.6
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCC
Q 000454 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGL 318 (1491)
Q Consensus 240 ~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~-tgk 318 (1491)
.+-.+.+..+..++||++||+++......-|+--...-...-+.-...|..|.|.|++.+.+.+ ..|.|++=+.. .+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445789999999999999999887777788854222222223356889999999998766654 88888887621 111
Q ss_pred ----ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 319 ----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 319 ----~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+..+..-.-.+..++|.+++. +.+++..|++.+ ..+.|+.-.... ........
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~----~wa~gg~G~l~~-S~DgGktW~~~~-----------------~~~~~~~n 277 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE----IWAVGGSGTLLV-STDGGKTWQKDR-----------------VGENVPSN 277 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEE-ESSTTSS-EE-G-----------------GGTTSSS-
T ss_pred ccccccCCcccCceeeEEEEecCCCC----EEEEeCCccEEE-eCCCCccceECc-----------------cccCCCCc
Confidence 1111222233489999999875 444555564433 333333222211 11123445
Q ss_pred eEEEEECCCCCEEEEecCCceEEEE
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVW 419 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVW 419 (1491)
++.|.|..+.+-+|.| .+|.|.-|
T Consensus 278 ~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 278 LYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp --EEEEEETTEEEEE--STTEEEEE
T ss_pred eEEEEEcCCCceEEEC-CCcEEEEe
Confidence 7888887666656655 46766544
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.52 E-value=22 Score=42.88 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEE----ecCCCCeEEEEEcCC----CCEEEEEECC--------
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYC---LASC----RGHEGDITDLAVSSN----NALVASASND-------- 306 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~---l~tL----~gH~~~VtsLafSPD----G~lLASGS~D-------- 306 (1491)
-+.|+|.|||+++++ -..|.|++++ ..+.. +..+ .........|+|+|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999988776 4599999999 55554 3333 134567899999994 4333333321
Q ss_pred CeEEEEECCCC-------Cce-eeecc---CCCceEEEEecCCCCceEEEEEEeCCC
Q 000454 307 CIIRVWRLPDG-------LPI-SVLRG---HTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 307 GtIrVWDl~tg-------k~i-~~L~g---Hs~~VtsLaFSPdg~s~~~LaSgS~DG 352 (1491)
..|.-|.+..+ +.+ ..+.. .......|+|.|++. ++++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~---LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK---LYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE---EEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc---EEEEeCCCC
Confidence 23444444333 111 11111 234456799999985 555555444
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.49 E-value=2.3 Score=49.29 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=90.4
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE-CCCCCc
Q 000454 245 AVYCAIFDRSGRYVITGS---DDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWR-LPDGLP 319 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS---~DGtIrIWDl~Tg~~l~t-L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD-l~tgk~ 319 (1491)
.+...+++++|..+|... ....+.++... ..... +.+ ..+..-.|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887765 33455555543 32222 233 3788889999987777666666677774 333432
Q ss_pred ee-eec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc--ceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 320 IS-VLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS--PRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 320 i~-~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~--~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.. .+. .-.+.|+.+.++||+....+++....++.|.+--+....-- ..+. .+..........
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~-------------~~~~~~~~~~~~ 167 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT-------------GPRRVAPPLLSD 167 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec-------------cceEecccccCc
Confidence 21 111 11128999999999983323333334577776654322111 1110 001111223567
Q ss_pred eEEEEECCCCCEEEEecCCc
Q 000454 395 IFCCAFNANGTVFVTGSSDT 414 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG 414 (1491)
+..++|.+++.+++.+...+
T Consensus 168 v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceeeeecCCCEEEEEeCCCC
Confidence 89999999998877766543
No 395
>PHA02713 hypothetical protein; Provisional
Probab=93.40 E-value=3.4 Score=53.45 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCCEEEEEeccc--eEEEEECCCCceEEEEeCCC
Q 000454 551 DNRFVLAAIMDC--RICVWNAADGSLVHSLTGHT 582 (1491)
Q Consensus 551 DG~~LaSGs~DG--~IrIWDl~tgkll~tL~gHs 582 (1491)
+|+..++|+.++ .+..||..+.+-...-..|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788888999888 67788887765544444444
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.37 E-value=11 Score=42.60 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=41.3
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS 591 (1491)
+++..+|.+.++.-..++|..+|..+|+.+.++.-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 5557789888888889999999999999999999889999999995
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=2.6 Score=52.16 Aligned_cols=152 Identities=12% Similarity=0.150 Sum_probs=99.2
Q ss_pred CCCEE-EEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceE----EEEEEeCCCcEEEEccCCCCccceeec
Q 000454 296 NNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY----QLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 296 DG~lL-ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~----~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
+.++| .++.....|+-.|++.|+.+..+.-+.. |.-+.+.|+.+... .-+.|-.+..|+-||.+-.... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 34444 4455556688889999999999987766 88888888865221 1244566778999998732211 1110
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
... ..........|++-..+| +||+|+.+|.|++||--. ...-..+++-..+|..|.
T Consensus 422 ~q~-------------kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~---------~~AKTAlPgLG~~I~hVd 478 (644)
T KOG2395|consen 422 VQS-------------KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG---------RRAKTALPGLGDAIKHVD 478 (644)
T ss_pred eec-------------cccccccccceeeecCCc-eEEEeecCCcEEeehhhh---------hhhhhcccccCCceeeEE
Confidence 000 011133446677776666 799999999999999721 223345677788999999
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
.+.+| ..+.|..+..+.+.++.
T Consensus 479 vtadG---------------------------Kwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 479 VTADG---------------------------KWILATCKTYLLLIDTL 500 (644)
T ss_pred eeccC---------------------------cEEEEecccEEEEEEEe
Confidence 98876 45556667777777654
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.13 E-value=0.17 Score=56.42 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=67.5
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee-ccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR-ILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
..+++|+.+|.|.+|....... .... ........+.|.--.++.+..+++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~----------------------------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA----------------------------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred ceEEeecccceEEEecCCccch----------------------------HHHhhhcccccceeccccccccceeEEecc
Confidence 5799999999999997662110 0000 0111222334444456678899999
Q ss_pred cceEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEE--eCCCcEEEEeCC
Q 000454 561 DCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA--GYDGKTIVWDIW 613 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gHs-~~VtsLafSPdd~~lLaSg--S~DGtIrIWDl~ 613 (1491)
+|.|+.|++.-.+.+.....|. .++..+..+. ..++++.+ |.|..++.|++.
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 9999999999888888777777 4444444444 45566666 677777777764
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=1 Score=59.76 Aligned_cols=142 Identities=11% Similarity=-0.029 Sum_probs=90.1
Q ss_pred CCeeEEEEcCCCCEEEEEe--ccceEEEEECCCCceEE-----EEeCC------CCCeEEEEEecCCCcEEEEEeCCCcE
Q 000454 541 RGVNMIVWSLDNRFVLAAI--MDCRICVWNAADGSLVH-----SLTGH------TESTYVLDVHPFNPRIAMSAGYDGKT 607 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs--~DG~IrIWDl~tgkll~-----tL~gH------s~~VtsLafSPdd~~lLaSgS~DGtI 607 (1491)
-.+..++..+|+...++.. .+-.|++||+.+...-. -|..| ..-..++.|.|.-....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3456666777877665543 34479999987532211 11112 23356788988666677778889999
Q ss_pred EEEeCCCCc-eEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cccc-------cccceeeecCCCcceE
Q 000454 608 IVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG--ESQK-------DAKYDQFFLGDYRPLV 677 (1491)
Q Consensus 608 rIWDl~tGk-~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG--~~~~-------~~~~~~~fs~D~r~La 677 (1491)
+|..+.... .+..+. ....+++++|+|.|+.+++|...|++.-|...-- ..+. ..+..+.|...+..|+
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 998875432 222322 3346889999999999999999999988865322 1111 1223456777777776
Q ss_pred EccCCC
Q 000454 678 QDTYGN 683 (1491)
Q Consensus 678 ~d~~G~ 683 (1491)
+-.++.
T Consensus 260 vy~n~t 265 (1405)
T KOG3630|consen 260 VYGNVT 265 (1405)
T ss_pred Eecccc
Confidence 555444
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.89 E-value=4.4 Score=52.54 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCCEEEEEeccce-----EEEEECCCCceEEE--EeCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCC
Q 000454 550 LDNRFVLAAIMDCR-----ICVWNAADGSLVHS--LTGHTESTYVLDVHPFNPRIAMSAGYDG-----KTIVWDIWEG 615 (1491)
Q Consensus 550 PDG~~LaSGs~DG~-----IrIWDl~tgkll~t--L~gHs~~VtsLafSPdd~~lLaSgS~DG-----tIrIWDl~tG 615 (1491)
-++.+.++|+.|+. |..||..+.+.... +......+..+ ..++.+.+.||.|| +|..||..+.
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~---~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV---VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE---EECCEEEEEecccCccccceeEEcCCCCC
Confidence 46778888887763 77788876554332 22222222222 23678888898876 4556665443
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.88 E-value=9.1 Score=44.79 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=113.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g-H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
+.|-...|.++.|+|+.+.|++......-.||=...|..+.++.- .-...-.|.+..+|++.++-=.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445556699999999999999988888888888888999988752 1334567788888888888777889988887655
Q ss_pred Cceeeec---------cC-CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 318 LPISVLR---------GH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 318 k~i~~L~---------gH-s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
..+..+. .+ ....-.++|.|... .|+.+-.-.-+.||.+..+......... ..+...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~l~~~~~----------~~~~~~ 227 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSSLSVHAS----------LDPTAD 227 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCcccccccc----------cCcccc
Confidence 3222111 12 45677899999987 7888888888888877633211111000 000000
Q ss_pred CCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCC
Q 000454 388 AGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 388 ~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~ 422 (1491)
..-.-..|..+.|++ .+.+|+-+..++.+.-.|..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111233466788886 45666777777777777764
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.86 E-value=16 Score=48.45 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECC----------CCCce---eee--------ccCCCceEEEEecCCCCceE
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLP----------DGLPI---SVL--------RGHTAAVTAIAFSPRPGSVY 343 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~----------tgk~i---~~L--------~gHs~~VtsLaFSPdg~s~~ 343 (1491)
.-.|..|.++|+|++||..|..|. .|-.+. .|+.. +++ ..+...|..+.|+|.+....
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 347889999999999999988764 443332 12111 111 13456889999999864334
Q ss_pred EEEEEeCCCcEEEEccCCCCcc
Q 000454 344 QLLSSSDDGTCRIWDARYSQFS 365 (1491)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~~ 365 (1491)
.|+.-..|+++++||+......
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCC
Confidence 8899999999999999765433
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.63 E-value=0.28 Score=54.83 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=64.0
Q ss_pred CCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCC-cceE
Q 000454 552 NRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-FRLV 629 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~-~~Vt 629 (1491)
+..+++|+.+|.|++|...- |.....+..-...|-++-..-.++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 46789999999999998752 111111112222333333222344588899999999999998888877776665 3444
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEECC
Q 000454 630 DGKFSPDGASIILS--DDVGQLYILNTG 655 (1491)
Q Consensus 630 slafSPDG~~LAsg--s~DG~I~IWdl~ 655 (1491)
.+..+..+++|+++ +.+..+..|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444455555554 555555555553
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.46 E-value=24 Score=40.87 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=82.2
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEc-cCCC
Q 000454 287 DITDLAVSSNNALVASAS---NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD-ARYS 362 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS---~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD-l~tg 362 (1491)
.+.+.+++++++.+|... ....+.++. .+.....+. ....+..-.|.+++. ..+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~---~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGW---VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCC---EEEEEcCCCceEEEEecCCC
Confidence 789999999999887766 234455554 333333322 223788889999965 445545555566663 2333
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec---CCceEEEEeCCCCCCCCCCCCCceeeee
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs---~DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1491)
...... +. .......|..+.+||||..+|.-. .++.|.|--+..............+...
T Consensus 99 ~~~~~~-v~----------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 99 TGEPVE-VD----------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cceeEE-ec----------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 221111 00 000111799999999999877654 3577777655322111000111222333
Q ss_pred cCCCCCceEEEEccCc
Q 000454 440 SGHENDVNYVQFSGCA 455 (1491)
Q Consensus 440 ~gH~~~V~sVafSpdg 455 (1491)
......+..+.|.++.
T Consensus 162 ~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDS 177 (253)
T ss_pred ccccCcceeeeecCCC
Confidence 3445678899998875
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.40 E-value=6 Score=51.31 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCCCEEEEEeccc------eEEEEECCCCceEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCc-----EEEEeCCCCc
Q 000454 550 LDNRFVLAAIMDC------RICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGK-----TIVWDIWEGI 616 (1491)
Q Consensus 550 PDG~~LaSGs~DG------~IrIWDl~tgkll~--tL~gHs~~VtsLafSPdd~~lLaSgS~DGt-----IrIWDl~tGk 616 (1491)
-+|.+.++|+.++ .+..||..+..... .+..-..... ++. .++.+.+.||.|+. |..||..+.+
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 4778888887554 47788877654332 2211111111 222 26788888998873 6778876654
Q ss_pred eEEE--EeeCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 000454 617 PIRI--YEISRFRLVDGKFSPDGASIILSDDVG-----QLYILNTGQG 657 (1491)
Q Consensus 617 ~l~~--l~~h~~~VtslafSPDG~~LAsgs~DG-----~I~IWdl~tG 657 (1491)
-... +......+. ...-+++..|+|+.+| +|..||..+.
T Consensus 503 W~~v~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred eeEcccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 3332 221111111 1233566667777665 4555554444
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.29 E-value=20 Score=47.74 Aligned_cols=90 Identities=7% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc---eee--------eecCCCCCceEEEEccCccccc
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH---EID--------VLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~---~i~--------~l~gH~~~V~sVafSpdg~as~ 459 (1491)
....|..+.++|+|.+||..|..|.+.+.=.+..........+. ... ....+...|..+.|+|.+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~--- 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE--- 159 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC---
Confidence 44579999999999999998887654443322111000000000 000 0123455788889988751
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~ 503 (1491)
.+..|+.-..|+++++||+.....
T Consensus 160 --------------------~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 160 --------------------SDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred --------------------CCCeEEEEecCCEEEEEecCCCCC
Confidence 246899999999999999976443
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.74 E-value=19 Score=48.28 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=65.6
Q ss_pred cceEEEEECCCCceEEEEeCC---------CCC--------e-EEEEEecCCCcEEEEE-----------------eCCC
Q 000454 561 DCRICVWNAADGSLVHSLTGH---------TES--------T-YVLDVHPFNPRIAMSA-----------------GYDG 605 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gH---------s~~--------V-tsLafSPdd~~lLaSg-----------------S~DG 605 (1491)
+|.|+-+|+.+|+++..+..- .+. + ..+++.|..+.+++-. -..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999998876421 011 1 1223333222222110 1246
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEE---------EEEcC-CCC---EEEEEeCCCcEEEEECCCCcccccc
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVD---------GKFSP-DGA---SIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~Vts---------lafSP-DG~---~LAsgs~DG~I~IWdl~tG~~~~~~ 663 (1491)
.|.-.|+.+|+....++..+..+++ +.+.. +|+ .|+.++.+|.++++|-.+|+.+...
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7888899999999999864332222 22333 664 7888999999999999999876543
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=91.50 E-value=10 Score=45.86 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=87.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVK-IWSMETAYCLASC-RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIr-IWDl~Tg~~l~tL-~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
.+.++++.+.+++.+++++.. |.+. .++ ..++....+ .+-...++++++.++++.++++ ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 457899999999988777654 5443 222 122222222 2345689999999999877765 4676654233444332
Q ss_pred eeecc----CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 321 SVLRG----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 321 ~~L~g----Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
..... -...+.++.|.+++. ++.++.+|.|.. ....++.-..+. .........+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~~-S~d~G~tW~~~~-----------------~~~~~~~~~~ 306 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLLV-SKDGGKTWEKDP-----------------VGEEVPSNFY 306 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC----EEEEcCCCeEEE-eCCCCCCCeECC-----------------cCCCCCcceE
Confidence 22111 124578899998764 566667775543 333333211110 0011223577
Q ss_pred EEEECCCCCEEEEecCCceEEEEeC
Q 000454 397 CCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 397 slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
.+.|..++..+++| ..|.|..|+-
T Consensus 307 ~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 307 KIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred EEEEeCCCceEEEC-CCceEEEecC
Confidence 78887777666654 5777776653
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.35 E-value=0.7 Score=39.41 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~ 277 (1491)
...|.+++|+|...+||.|..+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5554
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.26 E-value=10 Score=43.99 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=78.0
Q ss_pred eeEEEEcCCCCEEEEEeccc--eEEEEECCCCceEEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000454 543 VNMIVWSLDNRFVLAAIMDC--RICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG--~IrIWDl~tgkll~tL~gHs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~ 619 (1491)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-... ---.|+.. +.++..-.=.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677878888888877665 799999999998766543221 11234443 45566566778999999999999999
Q ss_pred EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 620 ~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
.+... +.=+.++ .||+.|+.++....|+++|..+-+.
T Consensus 125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 98743 4455565 6888999999999999999876544
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.90 E-value=0.9 Score=38.74 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999998 55543
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.39 E-value=43 Score=43.74 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=40.6
Q ss_pred CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
--.|+|+++ +|..+..+.-..+.+..+.|+.+. .|++...+|++.+|++..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecch
Confidence 346889886 677776665455588899999986 599999999999999853
No 413
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.34 E-value=67 Score=40.11 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=88.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-----EEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCC--CC---
Q 000454 254 SGRYVITGSDDRLVKIWSMETAY-----CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPD--GL--- 318 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~-----~l~tL~gH~~~VtsLafSP-----DG~lLASGS~DGtIrVWDl~t--gk--- 318 (1491)
....|++||..|.++||+...+. ++... .-..+|..|..-. +...||. -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985432 22222 2357888887542 2335555 4456788888731 11
Q ss_pred ----ceeeeccCC--CceEEEEecCCCCc--eEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 319 ----PISVLRGHT--AAVTAIAFSPRPGS--VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 319 ----~i~~L~gHs--~~VtsLaFSPdg~s--~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
.+..+..|. .....+++-|-+.. ..+|++-+.||.+.+++-+.-.+...+ +
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l--p------------------- 172 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL--P------------------- 172 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--C-------------------
Confidence 122222332 33445555554431 248889999999999987654322221 1
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeC
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
..--...++|.+.-..|++++.+..|.-|..
T Consensus 173 ~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 173 DFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 1111335778888888888888888888776
No 414
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.33 E-value=54 Score=38.94 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=52.2
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEe--CCCCCeEEEEEec-----CCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP-----FNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~--gHs~~VtsLafSP-----dd~~lLaSgS~DGtIrIWDl~tGk~l~~l 621 (1491)
.++++.=+.|..-|.|-+||+ .|.+++.+. +.-..-+.|+..| ..+.+|+---.||+|.++|..+|+.+..+
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 344444444556678999997 588888873 2333456677655 34567766567999999999999988877
Q ss_pred eeC
Q 000454 622 EIS 624 (1491)
Q Consensus 622 ~~h 624 (1491)
...
T Consensus 288 ~~~ 290 (336)
T TIGR03118 288 LDP 290 (336)
T ss_pred cCC
Confidence 643
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.04 E-value=7.3 Score=47.99 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=84.7
Q ss_pred cCCCCEEEEEe------CCCeEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEEC-----------------
Q 000454 252 DRSGRYVITGS------DDRLVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASASN----------------- 305 (1491)
Q Consensus 252 SpDG~~LATGS------~DGtIrIWDl~Tg~~l~tL~gH---~~~VtsLafSPDG~lLASGS~----------------- 305 (1491)
-|+|++++++- .-|-+.+.|-++...+...... ..--.++-|.|.-+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 46898888762 2357888998888887776532 334567788888888888642
Q ss_pred ---CCeEEEEECCCCCceeeeccCC--CceEEEEecCCCCceEEEEEEeCCCcEEEEcc-CCCCccceeecCCCCCcccC
Q 000454 306 ---DCIIRVWRLPDGLPISVLRGHT--AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 306 ---DGtIrVWDl~tgk~i~~L~gHs--~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl-~tg~~~~~i~~~~~~~~~~g 379 (1491)
..++.+||+.+.+.++++.--. ..+..|.|..+.....-++.+.-.+.|..|-- ..+.......+..+...+.+
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 3579999999999998886332 35678888777654445555555556655533 44433222211111111111
Q ss_pred CCCCC-CCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCC
Q 000454 380 RNMAP-SSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACK 423 (1491)
Q Consensus 380 ~~~~~-~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t 423 (1491)
..... ......-..-|+.|.+|.|.++|.+.+ ..|.|+.||+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 10000 001111245689999999999887765 589999999965
No 416
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.01 E-value=25 Score=43.54 Aligned_cols=149 Identities=12% Similarity=0.101 Sum_probs=87.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc--
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP-- 319 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~--l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~-- 319 (1491)
+....+..++||.+++.|.....++-||- |.. ...-......++.+.|.+++.+++++ ..|. .+|....+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCccc
Confidence 34566778899998888766544444553 322 11112345678999999999888766 5555 3444445532
Q ss_pred ---eeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 320 ---ISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 320 ---i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
...+.. -...++++.|.+++. ++.++..|.|.... ..++.-.... ....-...
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~----~~a~G~~G~v~~s~-D~G~tW~~~~-----------------~~~~~~~~ 372 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKE----AWAAGGSGILLRST-DGGKSWKRDK-----------------GADNIAAN 372 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCc----EEEEECCCcEEEeC-CCCcceeEcc-----------------ccCCCCcc
Confidence 222221 123589999998874 77777888777654 3332211110 01112345
Q ss_pred eEEEEECCCCCEEEEecCCceEEEE
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVW 419 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVW 419 (1491)
++.+.|.++++.+++| .+|.|.-|
T Consensus 373 ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 373 LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 7889998877766665 46666544
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.09 E-value=6.3 Score=49.73 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=71.0
Q ss_pred cCCCCCeeEEEEcCCC----CEEEEEeccceEEEEECC-----CCceEEEEeCCC-C--C--eEEEEEecCCCcEEEEEe
Q 000454 537 LPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAA-----DGSLVHSLTGHT-E--S--TYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG----~~LaSGs~DG~IrIWDl~-----tgkll~tL~gHs-~--~--VtsLafSPdd~~lLaSgS 602 (1491)
.+.-..|..++|.|-+ ..|++.-....|.||-+. ..+++..-..+- . + -..+.|||. ..+|+.-.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEe
Confidence 3444568889999853 244445567789999875 233333222111 1 1 245689994 44444333
Q ss_pred CCCcEEEEeCCC-CceEEEEeeCCcceEEEEEcCCCCEEEEE-eCCCcEEEEECCCC
Q 000454 603 YDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQG 657 (1491)
Q Consensus 603 ~DGtIrIWDl~t-Gk~l~~l~~h~~~VtslafSPDG~~LAsg-s~DG~I~IWdl~tG 657 (1491)
....-.++++.. ...++.--...+-|.|.+|.+||+.|+++ +..=+-+|||-...
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 333334555542 23333323467789999999999999876 44457799996443
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.01 E-value=8.9 Score=49.76 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=79.0
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEECCCeEEEEEC
Q 000454 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS--SNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafS--PDG~lLASGS~DGtIrVWDl 314 (1491)
++..-......+.-|.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+|+.+++.+..+.|.++.-
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 343333455555566666666665666789999999887554432 457889999996 58888888889999999853
Q ss_pred C---------CCCceeee--ccCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEcc
Q 000454 315 P---------DGLPISVL--RGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1491)
Q Consensus 315 ~---------tgk~i~~L--~gHs-~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl 359 (1491)
. +..++..+ ..|+ .+|.+..|.++|. |++|+. ..+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~----LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT----LVVGSG-NQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe----EEEEeC-CEEEEECC
Confidence 2 11233332 3454 6899999999984 555553 45777764
No 419
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.84 E-value=20 Score=47.14 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCCeeEEEEcC--CCCEEEEEeccceEEEEECCC-------C-------------ceEEEEeCCCCCeEEEEEe--cCCC
Q 000454 540 PRGVNMIVWSL--DNRFVLAAIMDCRICVWNAAD-------G-------------SLVHSLTGHTESTYVLDVH--PFNP 595 (1491)
Q Consensus 540 ~~~VtsVafSP--DG~~LaSGs~DG~IrIWDl~t-------g-------------kll~tL~gHs~~VtsLafS--Pdd~ 595 (1491)
+..|+.|.... +...|+++..||.|.+|.+.+ . ++...+. -...+++|+++ . ..
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~ 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KS 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cc
Confidence 34455554433 456788999999999997632 0 0112222 23367999998 5 56
Q ss_pred cEEEEEeCCCcEEEEeCCCC--ceEE-EEeeCCcceEEEEEcCCC-----C-EEEEEeCCCcEEEEEC
Q 000454 596 RIAMSAGYDGKTIVWDIWEG--IPIR-IYEISRFRLVDGKFSPDG-----A-SIILSDDVGQLYILNT 654 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tG--k~l~-~l~~h~~~VtslafSPDG-----~-~LAsgs~DG~I~IWdl 654 (1491)
++||.++....|.||-.... +... .-..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888887788888765432 1111 011244467788886643 2 7888999999999888
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.63 E-value=0.93 Score=58.64 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE-----------cCCCCEEEEEECCCeE
Q 000454 244 NAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV-----------SSNNALVASASNDCII 309 (1491)
Q Consensus 244 ~~Vt~VaFSp---DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf-----------SPDG~lLASGS~DGtI 309 (1491)
..+.-|.|.| ..-++..+-.++.|++..+.+... ..+++|...+.+++| ||||+.+|+++.||.+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3344455554 556777777888888877664433 445678887777664 8999999999999999
Q ss_pred EEEECC-----CCCceeeeccCC-CceEEEEecCCC-------CceEEEEEEeCCCcEEEEccCCCCcc
Q 000454 310 RVWRLP-----DGLPISVLRGHT-AAVTAIAFSPRP-------GSVYQLLSSSDDGTCRIWDARYSQFS 365 (1491)
Q Consensus 310 rVWDl~-----tgk~i~~L~gHs-~~VtsLaFSPdg-------~s~~~LaSgS~DGtVrIWDl~tg~~~ 365 (1491)
+.|.+. ..+++..++.|. ++-.|.-|+... ...++|-++..+..+++|.....+|.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 988763 234566666676 333333333221 11112333344556888887666655
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=87.61 E-value=74 Score=38.49 Aligned_cols=110 Identities=13% Similarity=-0.010 Sum_probs=65.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH----s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
...++++++.++++.+++| ..|.+++=....|..-.....+ ...+..+.+.| .+.+++ ++.+|.|. .....|
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~G 289 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDGG 289 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCCC
Confidence 3568889999999987766 4566654334444433322211 23478889988 445554 55677554 444444
Q ss_pred ceEEEEe---eCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 616 IPIRIYE---ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 616 k~l~~l~---~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+.-.... .-....+.+.|..+++.+++| ..|.|..|+-
T Consensus 290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred CCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 4333322 122357788888777766655 4588887764
No 422
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.14 E-value=0.17 Score=64.86 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=86.7
Q ss_pred CCeEEEEECCCCC-ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccC--CCCccceeecCCCCCcccCCCC
Q 000454 306 DCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 306 DGtIrVWDl~tgk-~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~--tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
.+.|++-+..+.. .-..+++..+.|-.++|-...- . .++ -.-|.+.||++. .|+....+.+..
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~-p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~---------- 175 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKC-P-KGR--RLVGELFVYDVDVLQGEIQPQLEVTP---------- 175 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCC-h-HHH--HHhhhhheeehHhhccccccceEEee----------
Confidence 4567777765433 2244567888888888854321 1 222 333678899875 344433332210
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1491)
....+.....|.-+-|-++..++.++-.++.|++..+.+ .....+.+|...+..++|...|+..
T Consensus 176 --~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r----------a~~~l~rsHs~~~~d~a~~~~g~~~---- 239 (1283)
T KOG1916|consen 176 --ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR----------ALRSLFRSHSQRVTDMAFFAEGVLK---- 239 (1283)
T ss_pred --cCcCCCCcceeeecccccccceeeeccCCCceeEeeech----------HHHHHHHhcCCCcccHHHHhhchhh----
Confidence 000111112333344445677888888899999887753 2235567799988888877655211
Q ss_pred ccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
+...-.++..|++.+.||.++.|.+.
T Consensus 240 -----------l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 240 -----------LASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred -----------heeeCCCCcEEEEeecCCccceeeee
Confidence 11122334567777777777777543
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.12 E-value=13 Score=45.54 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--CeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 244 NAVYCAIFDRSGRYVITGS-----------DDR-LVKIWSMET--AYC--LASCRGHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS-----------~DG-tIrIWDl~T--g~~--l~tL~gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
....+|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....|+|.++| ++++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence 3457899999999877753 223 777776543 332 23343334456889999988 5554 4443
Q ss_pred eEEEEECCC-C----Cceee---ecc----CCCceEEEEecCCCC
Q 000454 308 IIRVWRLPD-G----LPISV---LRG----HTAAVTAIAFSPRPG 340 (1491)
Q Consensus 308 tIrVWDl~t-g----k~i~~---L~g----Hs~~VtsLaFSPdg~ 340 (1491)
.+++.+... + +.... +.. +......++|.|++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 333434421 1 21111 221 234577899999986
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.10 E-value=28 Score=39.54 Aligned_cols=174 Identities=12% Similarity=0.151 Sum_probs=99.2
Q ss_pred EEEEEeCCCeEEEEE--CCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCCce
Q 000454 257 YVITGSDDRLVKIWS--METAYCLASCRG-----HEGDITDLAVSSNNALVASASND---------CIIRVWRLPDGLPI 320 (1491)
Q Consensus 257 ~LATGS~DGtIrIWD--l~Tg~~l~tL~g-----H~~~VtsLafSPDG~lLASGS~D---------GtIrVWDl~tgk~i 320 (1491)
+.+.++.--.|.=|| .+.....+++.. ......+-..+|+|++.+-.-.| |.++.|-. +..+
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v 150 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQV 150 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCc
Confidence 344444444455577 333344444321 13445566678999985433222 44555543 2233
Q ss_pred eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEc--cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 321 ~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD--l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
..+...-+--..++|..+.+ .+.++-+.+-.|.-|| ..+|....+-.+ ...+...+..... .-.+
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K--~fY~iDsln~~V~a~dyd~~tG~~snr~~i------~dlrk~~~~e~~~-----PDGm 217 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAK--KFYYIDSLNYEVDAYDYDCPTGDLSNRKVI------FDLRKSQPFESLE-----PDGM 217 (310)
T ss_pred eeeehhccCCccccccccCc--EEEEEccCceEEeeeecCCCcccccCccee------EEeccCCCcCCCC-----CCcc
Confidence 33333334456789997765 2445566677787787 666654432211 0111111111111 2234
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
++..+|++.++.-..++|...|..+ ++.+..+.-....|++++|-..
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~t---------GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTT---------GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCC---------CcEEEEEEcCCCceEEEEecCC
Confidence 4566889999888899999999977 5567777777889999999753
No 425
>PRK10115 protease 2; Provisional
Probab=86.57 E-value=1.3e+02 Score=40.21 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=50.1
Q ss_pred eEEEEECCCCceEEEEeCC-CC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEe-eCCcceEEEEEc--CC
Q 000454 563 RICVWNAADGSLVHSLTGH-TE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYE-ISRFRLVDGKFS--PD 636 (1491)
Q Consensus 563 ~IrIWDl~tgkll~tL~gH-s~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-Gk~l~~l~-~h~~~VtslafS--PD 636 (1491)
.|...++........+..+ .. .|..+.+. ...++++...+|.-+++-+.. +..+..+. .....+..+.++ ++
T Consensus 294 ~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (686)
T PRK10115 294 GLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPE 371 (686)
T ss_pred eEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCC
Confidence 3444455421222344444 33 57777776 457888888888766665432 33344443 222233334455 44
Q ss_pred CC-EEEEE---eCCCcEEEEECCCCc
Q 000454 637 GA-SIILS---DDVGQLYILNTGQGE 658 (1491)
Q Consensus 637 G~-~LAsg---s~DG~I~IWdl~tG~ 658 (1491)
+. ++++. ..-+.|+.+|+.+++
T Consensus 372 ~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 372 TSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEEEEEecCCCCCEEEEEECCCCc
Confidence 44 44333 235788889987764
No 426
>PHA03098 kelch-like protein; Provisional
Probab=86.47 E-value=17 Score=46.66 Aligned_cols=64 Identities=6% Similarity=-0.022 Sum_probs=34.1
Q ss_pred CCCCEEEEEecc------ceEEEEECCCCceEEE--EeCCCCCeEEEEEecCCCcEEEEEeCCC--------cEEEEeCC
Q 000454 550 LDNRFVLAAIMD------CRICVWNAADGSLVHS--LTGHTESTYVLDVHPFNPRIAMSAGYDG--------KTIVWDIW 613 (1491)
Q Consensus 550 PDG~~LaSGs~D------G~IrIWDl~tgkll~t--L~gHs~~VtsLafSPdd~~lLaSgS~DG--------tIrIWDl~ 613 (1491)
-++++++.|+.+ ..+..||..+.+-... +....... +++. - ++.+++.||.++ .+.+||..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-E-CCEEEEECCccCCCCCcccceEEEecCC
Confidence 356777777632 4588999876543221 11111111 2222 2 556777776432 37888887
Q ss_pred CCc
Q 000454 614 EGI 616 (1491)
Q Consensus 614 tGk 616 (1491)
+++
T Consensus 465 ~~~ 467 (534)
T PHA03098 465 TNK 467 (534)
T ss_pred CCc
Confidence 654
No 427
>PHA03098 kelch-like protein; Provisional
Probab=86.30 E-value=14 Score=47.29 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=35.3
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCC
Q 000454 253 RSGRYVITGSDDR------LVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNALVASASND-----CIIRVWRLPDGL 318 (1491)
Q Consensus 253 pDG~~LATGS~DG------tIrIWDl~Tg~~l~t--L~gH~~~VtsLafSPDG~lLASGS~D-----GtIrVWDl~tgk 318 (1491)
.++..++.|+.++ .+..||..+.+-... +.........+. -++.+++.|+.+ ..+.+||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556677776542 577888876654321 111111222222 257777888765 347778876653
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.11 E-value=12 Score=47.25 Aligned_cols=133 Identities=9% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCC
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1491)
Q Consensus 441 gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~ 520 (1491)
|.-..|..+.|.|.+... -..+++......|.+|.+...... ...|.....-.+.
T Consensus 54 GqFEhV~GlsW~P~~~~~----------------------~paLLAVQHkkhVtVWqL~~s~~e--~~K~l~sQtcEi~- 108 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTAD----------------------TPALLAVQHKKHVTVWQLCPSTTE--RNKLLMSQTCEIR- 108 (671)
T ss_pred eccceeeeeeecCcccCC----------------------CCceEEEeccceEEEEEeccCccc--cccceeeeeeecc-
Confidence 344568999999875211 125677778889999987632111 1111111000000
Q ss_pred CCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC--ceEEEEeCCCCCeEEEEEecCCCcEE
Q 000454 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG--SLVHSLTGHTESTYVLDVHPFNPRIA 598 (1491)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg--kll~tL~gHs~~VtsLafSPdd~~lL 598 (1491)
....--...+.|+|....|++-.....-.++++... +....+ .-.+.|.|.+|.++|.+++
T Consensus 109 ----------------e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 109 ----------------EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ----------------CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 000011234679999888887665544455555432 222333 3457799999999888888
Q ss_pred EEEeCCCcEEEEeCCCC
Q 000454 599 MSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~tG 615 (1491)
++.|..=.-+|||-...
T Consensus 172 VAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEeCCeEEEEEecCchh
Confidence 88887777899996443
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.42 E-value=31 Score=42.89 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=86.0
Q ss_pred CCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC--------CEEEEEECCCeEEEEECC-CCCceee
Q 000454 253 RSGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN--------ALVASASNDCIIRVWRLP-DGLPISV 322 (1491)
Q Consensus 253 pDG~~LA-TGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG--------~lLASGS~DGtIrVWDl~-tgk~i~~ 322 (1491)
.|..+|. .|+....+.-.|++.|+.+..+.-|..- -+.|.|+. +.|+-.+.. .|.-.|.+ .|..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCceee
Confidence 3444443 4555667777889999999998877654 56777753 245444444 44444543 3433333
Q ss_pred eccCCCceEEEEec-----CCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEE
Q 000454 323 LRGHTAAVTAIAFS-----PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 323 L~gHs~~VtsLaFS-----Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~s 397 (1491)
.. ....++--.|+ ..| ++++++..|.|++||--.-... ....+.+..|..
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyDRig~rAK--------------------talP~lG~aIk~ 608 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYDRIGKRAK--------------------TALPGLGDAIKH 608 (776)
T ss_pred ee-ehhccccccccccccccCc----eEEEecCCCceeeehhhcchhh--------------------hcCcccccceee
Confidence 22 22222222333 333 8999999999999995322211 112335677899
Q ss_pred EEECCCCCEEEEecCCceEEEEeCC
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~ 422 (1491)
+..+.+|.+|++.+. ..+.+.|+.
T Consensus 609 idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 609 IDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eEeecCCcEEEEeec-ceEEEEecc
Confidence 999999998887664 567777764
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.69 E-value=6.3 Score=48.85 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=66.9
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEE-EEEc-CC-------------
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD-LAVS-SN------------- 296 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~Vts-LafS-PD------------- 296 (1491)
.+.....|....-.+.+|+.+|++++.|+...=|.|.|+|+.++..++.++|..+.=.. +... ..
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 34555667777778999999999998888877799999999999998888875443211 1111 11
Q ss_pred ---CC-EEEEEECCCeEEEEECCCCCceeeec
Q 000454 297 ---NA-LVASASNDCIIRVWRLPDGLPISVLR 324 (1491)
Q Consensus 297 ---G~-lLASGS~DGtIrVWDl~tgk~i~~L~ 324 (1491)
.. +++-+-.-|.|-||.+++|..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11 33445668999999999888776665
No 431
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.65 E-value=95 Score=36.96 Aligned_cols=115 Identities=12% Similarity=0.222 Sum_probs=71.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC------CC-eEEEEEec-----CCCCeEEEEEcCCCC------------EEE
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSME------TA-YCLASCRG-----HEGDITDLAVSSNNA------------LVA 301 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~------Tg-~~l~tL~g-----H~~~VtsLafSPDG~------------lLA 301 (1491)
-+.|+|+|.+.+-++....+...+||.. .. .++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999888888888999999986 12 23334432 234678888875333 356
Q ss_pred EEECCCeEEEEECCCCCc-----eeeec-cCCCce-EEEEecCCCCceEEEEEEeCCCcEEEEccC
Q 000454 302 SASNDCIIRVWRLPDGLP-----ISVLR-GHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1491)
Q Consensus 302 SGS~DGtIrVWDl~tgk~-----i~~L~-gHs~~V-tsLaFSPdg~s~~~LaSgS~DGtVrIWDl~ 360 (1491)
.++.||+|.-|...-+.. ...+. +..+.| ..+++...+...++.++--..++|.|+|-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 778999999998543322 11222 122334 456666543222344444567889998754
No 432
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.90 E-value=1.8e+02 Score=39.65 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=50.7
Q ss_pred CCCEEEEEEcCCC------CEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcC---CC------CEEEEEEC
Q 000454 243 RNAVYCAIFDRSG------RYVITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSS---NN------ALVASASN 305 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG------~~LATGS~DGtIrIWDl~Tg~~l~tL~--gH~~~VtsLafSP---DG------~lLASGS~ 305 (1491)
...|.|+++.+++ ++++.|+.|+++++..+....++..+. +-...+.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 3568899999876 689999999999999998666666553 4445555555433 22 26667777
Q ss_pred CCeEEEE--ECCCC
Q 000454 306 DCIIRVW--RLPDG 317 (1491)
Q Consensus 306 DGtIrVW--Dl~tg 317 (1491)
+|.+.-. |.-+|
T Consensus 662 NGvllR~~id~v~G 675 (1205)
T KOG1898|consen 662 NGVLLRFVIDTVTG 675 (1205)
T ss_pred ccEEEEEEeccccc
Confidence 7765433 33444
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=1e+02 Score=36.43 Aligned_cols=160 Identities=16% Similarity=0.058 Sum_probs=86.9
Q ss_pred EccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 239 VRGHR-NAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 239 L~GH~-~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg--~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+-||- ..|..+....+-.++.+|-.--..-+|+.... ..+...-.-.+-+.++.|+ +++...+..+.-++|.|+.
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS 114 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS--EEYVYVADWSSGLRIVDIS 114 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEec--ccEEEEEcCCCceEEEecc
Confidence 44565 45666666544444444322222334554311 1112222245667788887 4566666677779999998
Q ss_pred CCCceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 316 DGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 316 tgk~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
+...-..+.. -.+.-+++..+-+ +...+..|.-+.+.|+.+....... ++- .....
T Consensus 115 ~P~sP~~~~~lnt~gyaygv~vsGn-----~aYVadlddgfLivdvsdpssP~la----------gry-------a~~~~ 172 (370)
T COG5276 115 TPDSPTLIGFLNTDGYAYGVYVSGN-----YAYVADLDDGFLIVDVSDPSSPQLA----------GRY-------ALPGG 172 (370)
T ss_pred CCCCcceeccccCCceEEEEEecCC-----EEEEeeccCcEEEEECCCCCCceee----------eee-------ccCCC
Confidence 7643322211 1244455555543 6677775656788888765432211 100 11122
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCC
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
....++.| |++...+..|+-+.|.|+..+
T Consensus 173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred CceeEEEe--cCeEEEEEeCCCeEEEEccCC
Confidence 22455555 667777778888999999653
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.32 E-value=89 Score=38.76 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=82.0
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 291 LAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 291 LafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
+-|...++.|++ ...|.+.=|-+... -++..-....++|.+|.|++|.+ .|++--.+.+|.+++....+....
T Consensus 28 vFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk---ilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 28 VFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK---ILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred eeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc---eEEEEecCceEEEEecCCCchhhH
Confidence 334433444433 34455666655322 33333345567999999999998 899999999999998744332222
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCce
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVN 447 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~ 447 (1491)
... ........|...+|+.. .-+|.-...| +-+|-.... ...++....|...|.
T Consensus 104 ~~~----------------~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe--------krslRlVks~~~nvn 157 (657)
T KOG2377|consen 104 YTQ----------------ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE--------KRSLRLVKSHNLNVN 157 (657)
T ss_pred HHH----------------HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh--------hhhhhhhhhcccCcc
Confidence 111 11223455889999866 4455444333 555554321 334566678888899
Q ss_pred EEEEccCc
Q 000454 448 YVQFSGCA 455 (1491)
Q Consensus 448 sVafSpdg 455 (1491)
...|+++.
T Consensus 158 Wy~yc~et 165 (657)
T KOG2377|consen 158 WYMYCPET 165 (657)
T ss_pred EEEEcccc
Confidence 99998875
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.95 E-value=39 Score=44.14 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=83.5
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE----ecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC----RGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL----~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
++++.++.-..+.+-.+.|+.+.. |++...+|+|.||++. |..+... ......|..+.|..+|-.+.+ .+|.
T Consensus 73 G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~ 148 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQ 148 (829)
T ss_pred ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEe--cCCc
Confidence 444444444445888999998865 5556799999999986 3333321 122345666666666643333 4455
Q ss_pred EEEE-ECCCCCceeeec---cCCCceEEEEecCCCCceEEEEEEe-CCCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 309 IRVW-RLPDGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 309 IrVW-Dl~tgk~i~~L~---gHs~~VtsLaFSPdg~s~~~LaSgS-~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
|.+- ++... .+..+. +..-.-.|-+..++......|+-.. ..| ..+........ +
T Consensus 149 v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~-q----------------- 208 (829)
T KOG2280|consen 149 VILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV-Q----------------- 208 (829)
T ss_pred EEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc-c-----------------
Confidence 5443 33221 112221 1111112222222221111111111 111 11111111110 0
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
..........+..|+.||+.++|+--...|.|.+-++..
T Consensus 209 -~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 209 -LHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred -ccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 001111245688899999999999999999999887754
No 436
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.19 E-value=32 Score=42.11 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=56.9
Q ss_pred CeeEEEEcCCCCEEEEEe-----------ccc-eEEEEECCC--Cce--EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 542 GVNMIVWSLDNRFVLAAI-----------MDC-RICVWNAAD--GSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs-----------~DG-~IrIWDl~t--gkl--l~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....|+|.+ ++ +++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 456799999999877643 223 787776543 332 234433334557899988 55 554 33443
Q ss_pred cEEEEeCCC-----CceEEE---EeeC----CcceEEEEEcCCCCEEEEEe
Q 000454 606 KTIVWDIWE-----GIPIRI---YEIS----RFRLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 606 tIrIWDl~t-----Gk~l~~---l~~h----~~~VtslafSPDG~~LAsgs 644 (1491)
.+++.|... ++.... +... +.....++|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333445431 122112 2221 23466899999998776544
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=80.49 E-value=34 Score=43.45 Aligned_cols=104 Identities=11% Similarity=0.004 Sum_probs=50.5
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCC--ceee
Q 000454 254 SGRYVITGSDDR-----LVKIWSMETAYCLA--SCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGL--PISV 322 (1491)
Q Consensus 254 DG~~LATGS~DG-----tIrIWDl~Tg~~l~--tL~gH~~~VtsLafSPDG~lLASGS~D--GtIrVWDl~tgk--~i~~ 322 (1491)
++.++++|+.++ .+..||..+..-.. .+.........+ .-+|.+.+.|+.+ ..+..||..++. .+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 57778877654322 222111112222 2367777888764 357778865542 1122
Q ss_pred eccCCCceEEEEecCCCCceEEEEEEeCCC---cEEEEccCCCCc
Q 000454 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDG---TCRIWDARYSQF 364 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG---tVrIWDl~tg~~ 364 (1491)
+....... +++. -++. ..+.||.++ .+..||..+...
T Consensus 349 l~~~r~~~-~~~~-~~g~---IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNP-AVAS-INNV---IYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCccc-EEEE-ECCE---EEEecCcCCCCccEEEEeCCCCEE
Confidence 21111111 1222 2332 556666543 366777765543
No 438
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.24 E-value=26 Score=43.37 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCeEEEEECCCCeEEEEEecCC--CCeEEEEEcCC--CCEE-EEEECCCeEEEEEC-CCCC----ceeeec---------
Q 000454 264 DRLVKIWSMETAYCLASCRGHE--GDITDLAVSSN--NALV-ASASNDCIIRVWRL-PDGL----PISVLR--------- 324 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH~--~~VtsLafSPD--G~lL-ASGS~DGtIrVWDl-~tgk----~i~~L~--------- 324 (1491)
..++.+||+.+.+.++++.-.. ..+..|.|..+ ..+= +.+.-..+|..|-- ..+. .+..+.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4689999999999999987433 23567777654 3332 33333445554432 3331 111111
Q ss_pred --------cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccc---eeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 325 --------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP---RIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 325 --------gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~---~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
.-..-|+.|..|.|.+ ++.+++-..|.|+.||+....... ++++.... .+...+...-..-.+
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~----~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI----RKGDHPVVKGKRLRG 374 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT----T-B--TTS------S
T ss_pred cccccccccCCCceEeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe----ccCCCccccccccCC
Confidence 1135689999999987 456677789999999998654322 22221100 000011111122334
Q ss_pred ceEEEEECCCCCEEEEec
Q 000454 394 QIFCCAFNANGTVFVTGS 411 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs 411 (1491)
...-+..|-||+.|.+.+
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 567788888998777654
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.70 E-value=0.95 Score=55.33 Aligned_cols=134 Identities=10% Similarity=0.148 Sum_probs=89.6
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
......|-+.+.-++.++.+..|..||-... .+ .-...++....++|.-.+
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq----------~~-le~n~tg~aldm~wDkeg------------------ 86 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ----------VI-LELNPTGKALDMAWDKEG------------------ 86 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcc----------ee-cccCCchhHhhhhhcccc------------------
Confidence 3455678888877999998988988886431 11 111223444556665443
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
+..++.+...+.+.+||+.+... +... .+....-.-+.|++.+.
T Consensus 87 -------dvlavlAek~~piylwd~n~eyt--------qqLE---------------------~gg~~s~sll~wsKg~~ 130 (615)
T KOG2247|consen 87 -------DVLAVLAEKTGPIYLWDVNSEYT--------QQLE---------------------SGGTSSKSLLAWSKGTP 130 (615)
T ss_pred -------chhhhhhhcCCCeeechhhhhhH--------HHHh---------------------ccCcchHHHHhhccCCc
Confidence 23566677889999999986331 1110 01111112267999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP 592 (1491)
.++.+...|.+.|++..+.+.+...-.|...+++++|.+
T Consensus 131 el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 131 ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred cccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 999999999999999888776666655888999999988
No 440
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.64 E-value=11 Score=49.52 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec----------CCCc----EEEEEeCCCc
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP----------FNPR----IAMSAGYDGK 606 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP----------dd~~----lLaSgS~DGt 606 (1491)
..-..++.||+|++.|+...=|.|.+.|+..+..+..++|..+. ++.|-+ ...+ +++-+-.-|.
T Consensus 322 R~ge~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDA--sc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgi 399 (1244)
T KOG2727|consen 322 RKGEKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDA--SCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGI 399 (1244)
T ss_pred cccceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccc--eeEEEEcccccCCCccCcCceeEEEEEecccccH
Confidence 34456899999999999988899999999988888888887664 233322 1111 3334557788
Q ss_pred EEEEeCCCCceEEEEee
Q 000454 607 TIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 607 IrIWDl~tGk~l~~l~~ 623 (1491)
+-||.+.+|-.+..+..
T Consensus 400 LEVW~~q~gpRV~AfnV 416 (1244)
T KOG2727|consen 400 LEVWQMQTGPRVLAFNV 416 (1244)
T ss_pred HHHHHhccCCeEEEEec
Confidence 99999999887777753
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=78.66 E-value=28 Score=45.39 Aligned_cols=110 Identities=16% Similarity=0.309 Sum_probs=73.3
Q ss_pred eeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe-CCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEeCC-------
Q 000454 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPF-NPRIAMSAGYDGKTIVWDIW------- 613 (1491)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~-gHs~~VtsLafSPd-d~~lLaSgS~DGtIrIWDl~------- 613 (1491)
+..+.-|.-++..++-.....+.|||...+.+...-. ...+.|.++.|... ++..+++.|....|.++--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344445556655555556689999999887654332 45678999998642 45667778889999988531
Q ss_pred --CCceEEEEee---CCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 614 --EGIPIRIYEI---SRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 614 --tGk~l~~l~~---h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+..+++.+.. ...+|.+..|-+||.+++.++ ..++|++-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1234444432 234789999999998766654 57888874
No 442
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=78.44 E-value=47 Score=41.37 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEC-------CCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSM-------ETAYCLASC-RGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl-------~Tg~~l~tL-~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
....+..|...|.-+++. |..+.||+. .++.....+ .++...+.+| ++.....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccc
Confidence 445666666666555543 678999998 444444444 4444444443 4455667888888642
Q ss_pred CCC-ceeeec------------cCCCceEEE-EecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCccc--C
Q 000454 316 DGL-PISVLR------------GHTAAVTAI-AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA--G 379 (1491)
Q Consensus 316 tgk-~i~~L~------------gHs~~VtsL-aFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~--g 379 (1491)
+.. .+.... .....+..+ ...+.+ ++.+...|.|.+.-.+.......+.......... +
T Consensus 97 ~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~-----~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~ 171 (422)
T PF08801_consen 97 SHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG-----FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKIN 171 (422)
T ss_dssp T-TT--EEEE------------------EEEEEEETTT-----EEEEETT--EEEEEE-TTS-EEEEE-TT---------
T ss_pred hhhhhcCccccccccccceeeecCCceEEECCCCceEE-----EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccc
Confidence 221 111110 011112222 233332 4555566666666555533333333211111000 0
Q ss_pred CCCCCC-CCC---CCC-CcceEEEEECCCCCEEEEecCCceEEEEeCC
Q 000454 380 RNMAPS-SSA---GPQ-SHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 380 ~~~~~~-~s~---~~h-~~~V~slafSPDG~~LasGs~DG~IrVWDl~ 422 (1491)
...... ... ... ...|..++..+..+.+++.+.+|.|.+|++.
T Consensus 172 ~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 172 HTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --------------------EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred cccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 000000 010 112 3449999999988999999999999999995
No 443
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.82 E-value=2.1e+02 Score=36.35 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=38.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc--eeeec-----cCCCceEEEEecCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP--ISVLR-----GHTAAVTAIAFSPRP 339 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~--i~~L~-----gHs~~VtsLaFSPdg 339 (1491)
.-...+.|+|.|||++|++--..|.|++++..++.. +..+. ...+....|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345678999999998887765469999998655432 21111 125678999999984
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=77.07 E-value=21 Score=46.96 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=77.2
Q ss_pred EEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------C-------------eEEEEEecCCCCeEEEEEc--CCCCEEE
Q 000454 246 VYCAIFDR--SGRYVITGSDDRLVKIWSMET-------A-------------YCLASCRGHEGDITDLAVS--SNNALVA 301 (1491)
Q Consensus 246 Vt~VaFSp--DG~~LATGS~DGtIrIWDl~T-------g-------------~~l~tL~gH~~~VtsLafS--PDG~lLA 301 (1491)
|+.|.+.. ....|+.|.+||.|.+|.+++ . ++...++ -...++.+++. ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444433 556899999999999997631 0 0112222 34578999998 7788999
Q ss_pred EEECCCeEEEEECCCC--Ccee-eeccCCCceEEEEecCCCCce---EEEEEEeCCCcEEEEcc
Q 000454 302 SASNDCIIRVWRLPDG--LPIS-VLRGHTAAVTAIAFSPRPGSV---YQLLSSSDDGTCRIWDA 359 (1491)
Q Consensus 302 SGS~DGtIrVWDl~tg--k~i~-~L~gHs~~VtsLaFSPdg~s~---~~LaSgS~DGtVrIWDl 359 (1491)
+++....|.||-+... +... .-..|...|-+|+|.++..+. -.|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9998888888865432 1111 111366789999998876322 27888999999999887
No 445
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=76.55 E-value=92 Score=44.35 Aligned_cols=367 Identities=13% Similarity=0.120 Sum_probs=170.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
.|...++.|.-+++|.++=. .|+.|+.||..+++-...-..-...+..+.-.-||++.| .++. .|-|+..+...
T Consensus 360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~-~l~nLSs~~~~ 433 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDD-TLVNLSSGQMS 433 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCC-ceeecCCCCcc
Confidence 36666777777777776644 467788888765521110001233445555555555554 2211 12344443321
Q ss_pred eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 321 ~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
.. .-..|.+....+++. ..++++-....+.+|++....-...-.. ..............+|.+
T Consensus 434 ~~---~v~~l~sfSv~~~g~--vA~L~~~d~q~~qL~~m~~~~a~~~p~~------------~~~L~L~dG~a~A~~VgL 496 (1774)
T PF11725_consen 434 EA---EVDKLKSFSVAPDGT--VAMLTGKDGQTLQLHDMSPVDAPPTPRK------------TKTLQLADGKAQAQSVGL 496 (1774)
T ss_pred hh---hhhhcccccccCCCc--eeeeecCCCcceeeeccCccccccCccc------------eeeeeccCCchhhhheee
Confidence 11 123566777788876 2466777777789998865421110000 000011112336778888
Q ss_pred CCCCCEEEEecCCceEEEEeCCCCCCCCC---CCCCce---eeeecCCCCCceEEEEccCccccccccccCC------CC
Q 000454 401 NANGTVFVTGSSDTLARVWNACKPNTDDS---DQPNHE---IDVLSGHENDVNYVQFSGCAVASRFSLADSS------KE 468 (1491)
Q Consensus 401 SPDG~~LasGs~DG~IrVWDl~t~~~~~s---~~~~~~---i~~l~gH~~~V~sVafSpdg~as~~s~~~~~------~~ 468 (1491)
+++ .|++...+|.++.=++........ ..+... .....++...|+.. ++.+.-.....+.+.. ..
T Consensus 497 s~d--rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF-~~gd~G~lhAlikd~~GQ~Hs~aL 573 (1774)
T PF11725_consen 497 SND--RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSALGGDHKVTGF-ISGDDGQLHALIKDRQGQRHSHAL 573 (1774)
T ss_pred cCC--eEEEEeCCCCEEecccccccCCCcceEeccccccccccccccccceeecc-ccCCCCeeeEEEeccCCceeeccc
Confidence 876 577788888888777644321100 000111 11111222222222 1110000000000000 00
Q ss_pred -CCCccccccccC--------------------------CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 469 -DSTPKFKNSWFC--------------------------HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 469 -~~~~~~~~~~~~--------------------------~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
+....+..-|.- +..=..+=.||.|..||-.+. .|...-.-.+.
T Consensus 574 de~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq-------~W~~~~~kd~~-- 644 (1774)
T PF11725_consen 574 DEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQ-------CWKDAGVKDID-- 644 (1774)
T ss_pred cccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcch-------hhhhccCcCHH--
Confidence 011111111211 111123445799999987753 23322110000
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC----CCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA----ADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl----~tgkll~tL~gHs~~VtsLafSPdd~~l 597 (1491)
....+---..+.-..+.|..+.+++.-.-++-|... .+-+=-. .-|..+.-+. ...|+++++-. + +-
T Consensus 645 ----~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~-~~a~~~~r~~~e~G~~l~Gl~--~~~i~a~Avv~-~-~~ 715 (1774)
T PF11725_consen 645 ----QLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNN-VFALPQRRNKVELGDALEGLE--DRVITAFAVVN-D-NK 715 (1774)
T ss_pred ----HHhccccCCceEecCCceeeeecccCCCccccCCCc-ccccccccCCCCCCccccCCC--cCcceeEEEEc-C-Cc
Confidence 000000011122234456666666655545444221 1111000 1133333333 44678888864 4 44
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 598 AMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 598 LaSgS~DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+++....|.+.+.. ..+.++..-. +-.+.|.++++....++.|. ..+|.|+..+
T Consensus 716 fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Al-t~~G~Lf~~~ 770 (1774)
T PF11725_consen 716 FVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYAL-TSTGELFRLP 770 (1774)
T ss_pred eEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeEe-cCCCceeecC
Confidence 45788899999998 6777554332 23568999999888665554 4557776544
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.66 E-value=86 Score=39.49 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=52.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~ 619 (1491)
.-.|..|..++.|..++.++.+|.+.++=.+..-.-..+......|+|=.|.- +.+++.+ +
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-~~~~fts-s----------------- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-AERFFTS-S----------------- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-cceeecc-C-----------------
Confidence 34578889999999999999888654432221111112222222233333322 2222211 0
Q ss_pred EEeeCCcceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCccc
Q 000454 620 IYEISRFRLVDGKFSPDG---ASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 620 ~l~~h~~~VtslafSPDG---~~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
.+-.+..++|+|+. .+|.+-..|..|+||++.....+
T Consensus 164 ----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 ----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 11134456777764 56666677777788777654443
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.52 E-value=14 Score=42.03 Aligned_cols=64 Identities=14% Similarity=0.295 Sum_probs=46.7
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeEEEEE-------e-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASC-------R-------GHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 251 FSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL-------~-------gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+...+.+|++...+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4557889999999999999999998775432 1 2456677777777777666654 4667777753
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=73.73 E-value=11 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCeEEEEECCCC
Q 000454 244 NAVYCAIFDRS-G--RYVITGSDDRLVKIWSMETA 275 (1491)
Q Consensus 244 ~~Vt~VaFSpD-G--~~LATGS~DGtIrIWDl~Tg 275 (1491)
++|.++.|||. + .+||.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 57999999984 4 58999888899999999853
No 449
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.26 E-value=1e+02 Score=39.05 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=62.9
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce--EEEE----e-CCCCCeEEEEEecCC------CcEEEEE
Q 000454 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL--VHSL----T-GHTESTYVLDVHPFN------PRIAMSA 601 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl--l~tL----~-gHs~~VtsLafSPdd------~~lLaSg 601 (1491)
.+...-...+.|+|.|||++|++--..|.|++++..++.. +..+ . .-.+....|+|+|+- +.+.++-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 3444455678999999998877665569999998655432 2211 1 124567899999853 1233332
Q ss_pred eC---------CCcEEEEeCCCC--c---eEEEEeeC----CcceEEEEEcCCCCEEEEEeCC
Q 000454 602 GY---------DGKTIVWDIWEG--I---PIRIYEIS----RFRLVDGKFSPDGASIILSDDV 646 (1491)
Q Consensus 602 S~---------DGtIrIWDl~tG--k---~l~~l~~h----~~~VtslafSPDG~~LAsgs~D 646 (1491)
+. ...|.-|.+... . ....+... ...-..|+|.|||.++++.++.
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 11 234444554321 1 11122211 0123367899999877665554
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=72.88 E-value=50 Score=37.36 Aligned_cols=102 Identities=17% Similarity=0.344 Sum_probs=65.0
Q ss_pred CEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---C---eEEEE-ECCC----CCcee-
Q 000454 256 RYVITGSDDRLVKIWSME--TAYCLASCRGHEGDITDLAVSSNNALVASASND---C---IIRVW-RLPD----GLPIS- 321 (1491)
Q Consensus 256 ~~LATGS~DGtIrIWDl~--Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---G---tIrVW-Dl~t----gk~i~- 321 (1491)
+.|+.+...+.|.+|++. ..+.+.++.. -+.|..++++..|+||+|-=.+ . .+|+| +++. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455554666889999987 4456666664 4789999999999999996332 2 56775 3321 12222
Q ss_pred eeccC---------------------CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 322 VLRGH---------------------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 322 ~L~gH---------------------s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
.+.|| ...+.+++.+|-.+ -|+.|+. +.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG---~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG---NLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC---CEEEEcC-CEEEEEEEEEE
Confidence 12221 23567788888765 4666654 56888877543
No 451
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.87 E-value=66 Score=33.80 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=72.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEE
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWR 313 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~Tg--------~~l~tL~gH~~~VtsLafSP-----DG~lLASGS~DGtIrVWD 313 (1491)
..-.|......|+.++.-|.|.|.+.... ..+..|. -...|++|+-.+ +...|+.|+.. .|.+||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEE
Confidence 34557666777888888899999987633 2334443 456788876543 34477777654 799999
Q ss_pred CCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
+.....+..-. -...|.+|.+-.-+....-|+..+.+..|.-||....+
T Consensus 80 V~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 98776554322 34667777764332211246666666777777766544
No 452
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=72.77 E-value=74 Score=36.02 Aligned_cols=104 Identities=13% Similarity=0.232 Sum_probs=64.7
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1491)
+.|+.+.....|.+|++.... .+.......-+.|..++++..|.||++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~----------------------------~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE----------------------------CPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC----------------------------CceeEEEcchhheeEEEeccccceEEEEEee
Confidence 466666777889999988322 1122223344778999999999999984322
Q ss_pred ------ceEEEE---ECC--CCceEE-EEeCC---------------------CCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 562 ------CRICVW---NAA--DGSLVH-SLTGH---------------------TESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 562 ------G~IrIW---Dl~--tgkll~-tL~gH---------------------s~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
..+++| ... ...++. .+.|| ...+.+++..|..|.+++ +.++.+.
T Consensus 81 ~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g~~~~l~ 158 (215)
T PF14761_consen 81 NKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--GCGNKLV 158 (215)
T ss_pred cCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--EcCCEEE
Confidence 255664 222 112222 22232 235678888998888885 3367899
Q ss_pred EEeCCCC
Q 000454 609 VWDIWEG 615 (1491)
Q Consensus 609 IWDl~tG 615 (1491)
||.+...
T Consensus 159 lf~l~~~ 165 (215)
T PF14761_consen 159 LFTLKYQ 165 (215)
T ss_pred EEEEEEE
Confidence 9987543
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=72.44 E-value=2.6e+02 Score=35.03 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=37.9
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
++.+.+-+.||.+.+++-..-- + ..+.+.---...++|.+.-..|++++.
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~-------f-----------------------~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFA-------F-----------------------SRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEE-------E-----------------------EEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 4689999999999999766411 0 011111111233677787788888888
Q ss_pred cceEEEEEC
Q 000454 561 DCRICVWNA 569 (1491)
Q Consensus 561 DG~IrIWDl 569 (1491)
+..|.-|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 878777754
No 454
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=72.38 E-value=17 Score=39.66 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.1
Q ss_pred ceEEEEEcCCC------CEEEEEeCCCcEEEEECCC
Q 000454 627 RLVDGKFSPDG------ASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 627 ~VtslafSPDG------~~LAsgs~DG~I~IWdl~t 656 (1491)
.|..++|||-| -+||+.+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 4688889999999999754
No 455
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=72.09 E-value=9.2 Score=32.13 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.5
Q ss_pred cceEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 000454 626 FRLVDGKFSPDG---ASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 626 ~~VtslafSPDG---~~LAsgs~DG~I~IWdl~t 656 (1491)
+.|.+++|||.. .+||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4899999999999999975
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=1.8e+02 Score=33.02 Aligned_cols=110 Identities=6% Similarity=-0.030 Sum_probs=66.1
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCCceeeeccCCCce
Q 000454 254 SGRYVITGSD--DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAV 330 (1491)
Q Consensus 254 DG~~LATGS~--DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLA-SGS~DGtIrVWDl~tgk~i~~L~gHs~~V 330 (1491)
+|.++.+.+. ...|++||+.+|+.+..-.-....+..=-...-|.++. -.=.+|...++|..+.+++..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 5677776664 34799999999998876542211221111111123222 22357888899988888877665 23444
Q ss_pred EEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 331 tsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
+.++- |+. .|+.+....++++-|..+-....++.
T Consensus 134 WgLt~--d~~---~LimsdGsatL~frdP~tfa~~~~v~ 167 (262)
T COG3823 134 WGLTS--DDK---NLIMSDGSATLQFRDPKTFAELDTVQ 167 (262)
T ss_pred eeeec--CCc---ceEeeCCceEEEecCHHHhhhcceEE
Confidence 45544 444 47777777788888877666555553
No 457
>PHA02790 Kelch-like protein; Provisional
Probab=71.67 E-value=1.1e+02 Score=38.93 Aligned_cols=99 Identities=6% Similarity=-0.101 Sum_probs=48.2
Q ss_pred CCCCEEEEEeccc---eEEEEECCCCceEEE--EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE--EEEe
Q 000454 550 LDNRFVLAAIMDC---RICVWNAADGSLVHS--LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI--RIYE 622 (1491)
Q Consensus 550 PDG~~LaSGs~DG---~IrIWDl~tgkll~t--L~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l--~~l~ 622 (1491)
-+|+..+.|+.++ .+..||..+.+-... +.........+++ ++++.+.|+ .+.+||..+++=. ..+.
T Consensus 361 ~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 361 INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPI 434 (480)
T ss_pred ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCC
Confidence 4677777777543 467888766543221 1111111112222 567776664 5778888765322 2221
Q ss_pred eCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 000454 623 ISRFRLVDGKFSPDGASIILSDDV-----GQLYILNTGQ 656 (1491)
Q Consensus 623 ~h~~~VtslafSPDG~~LAsgs~D-----G~I~IWdl~t 656 (1491)
....... +..-+|+..++|+.+ ..|.+||..+
T Consensus 435 ~~r~~~~--~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 435 YPRDNPE--LIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCccccE--EEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 1111111 223366777777654 2345555443
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=70.58 E-value=1.7e+02 Score=35.25 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=64.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCe------EEEEECCC--C--eEE-----EEEecCCC--------CeEEEEEcCCCCE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRL------VKIWSMET--A--YCL-----ASCRGHEG--------DITDLAVSSNNAL 299 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGt------IrIWDl~T--g--~~l-----~tL~gH~~--------~VtsLafSPDG~l 299 (1491)
-+.+..|.+.+++..+++.+++|. +..+.+.. + ..+ ..+..-.+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999976666777778887 65555543 1 111 11221112 4458888778888
Q ss_pred EEEEECC------CeEEEEECCCCCceeeec---------------cCCCceEEEEecCCCCceEEEEEEe
Q 000454 300 VASASND------CIIRVWRLPDGLPISVLR---------------GHTAAVTAIAFSPRPGSVYQLLSSS 349 (1491)
Q Consensus 300 LASGS~D------GtIrVWDl~tgk~i~~L~---------------gHs~~VtsLaFSPdg~s~~~LaSgS 349 (1491)
+++.=.+ ..|+.++.. |..+..+. ......-+|+++|++. .|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~---~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR---TLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC---EEEEEE
Confidence 8776556 678888865 65544431 1235678999999987 555553
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.31 E-value=4.7e+02 Score=36.64 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSME 273 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~ 273 (1491)
..-..++|+|.-.++|.|...|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 456788999999999999999999999754
No 460
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=68.77 E-value=1.4e+02 Score=39.34 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=40.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL-~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
|-+.++.+.|.-++--++..-.|.+ ..+....+ -.-...|...+||.|.+.++....+..|.+++
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 5566667777665544444444432 11222222 23467899999999999777777777888876
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=67.15 E-value=27 Score=38.01 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.0
Q ss_pred CceEEEEecCCCC---ceEEEEEEeCCCcEEEEccC
Q 000454 328 AAVTAIAFSPRPG---SVYQLLSSSDDGTCRIWDAR 360 (1491)
Q Consensus 328 ~~VtsLaFSPdg~---s~~~LaSgS~DGtVrIWDl~ 360 (1491)
..|..++|+|.|- ...+|++.+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 4799999999652 23589999999999999765
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.81 E-value=71 Score=40.17 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=24.0
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEe
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWD 420 (1491)
-.-.|..+..++.|..++-.|.+|.+.++=
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 345678889999999999999999776554
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.67 E-value=1 Score=55.09 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 288 VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
.....|-+.+.-|+.++.+..|..||- .++.+..+. .++....++|..++. ..++.+-..+.+.+||+.+.... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegd--vlavlAek~~piylwd~n~eytq-q 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGD--VLAVLAEKTGPIYLWDVNSEYTQ-Q 111 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccc--hhhhhhhcCCCeeechhhhhhHH-H
Confidence 334567777777888888888899983 444433333 455666788888665 25666777899999999754321 1
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCce
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVN 447 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~ 447 (1491)
+.. +....-.-+.|++.+..++.|...|.+.||+..+ .+.+...-.|...++
T Consensus 112 LE~-------------------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt---------sR~iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 112 LES-------------------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT---------SRRIIVMGKHQRRGT 163 (615)
T ss_pred Hhc-------------------cCcchHHHHhhccCCccccccccccceEEEeccc---------hhhhhhhccccccee
Confidence 110 1111222278999999999999999999999865 233334444889999
Q ss_pred EEEEccCc
Q 000454 448 YVQFSGCA 455 (1491)
Q Consensus 448 sVafSpdg 455 (1491)
+++|.+.+
T Consensus 164 q~av~lEd 171 (615)
T KOG2247|consen 164 QIAVTLED 171 (615)
T ss_pred EEEecccc
Confidence 99998764
No 464
>PRK05560 DNA gyrase subunit A; Validated
Probab=66.44 E-value=4.8e+02 Score=35.69 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=59.6
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCc---------eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCc
Q 000454 294 SSNNALVASASNDCIIRVWRLPDGLP---------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 294 SPDG~lLASGS~DGtIrVWDl~tgk~---------i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~ 364 (1491)
-++...++..+.+|.|+--.+..... ...++.. ..+..+..+.... .|+..+..|.+....+..-..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d---~LllfTs~Grv~~l~v~~iP~ 570 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHD---TLLFFTNRGRVYRLKVYEIPE 570 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCC---eEEEEecCCeEEEEEhhhCcC
Confidence 34566888889999998876543211 1112222 2333333333333 566677777766654431100
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC--CCCEEEEecCCceEEEEeCC
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA--NGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 365 ~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP--DG~~LasGs~DG~IrVWDl~ 422 (1491)
.. ....|..............-+.++.+.. +..+++..+.+|.++-..+.
T Consensus 571 ~~--------~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 571 AS--------RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred CC--------cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 00 0000111111111222333455666652 66788999999998877664
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=66.00 E-value=53 Score=42.40 Aligned_cols=72 Identities=13% Similarity=0.252 Sum_probs=49.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
...+++|.-+|.|.-++.++.||.|++|++...+.-+.+. -..+-..+.|...| |+++..|..+.-|. ++|-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgv 85 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGV 85 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee-ccCc
Confidence 4567888888999999999999999999987655433222 22334455665444 66666788888886 3443
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=65.34 E-value=4.9e+02 Score=35.38 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=45.6
Q ss_pred CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~--tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
.-..|.|.++-..|++++ ...+.++|+.+..... ........|..+.-+|.+..+++.-. ...|...++..
T Consensus 205 ~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 205 NWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred cceeeEecCCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 345688888888888775 4578999998776533 12234567888888885443332222 24677778766
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.26 E-value=3.7e+02 Score=33.57 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=41.3
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT---GHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~---gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
..+..+.|.+++..+++| ..|.|.+.. ..|+.-.... .-....+.+.|.+ +++.++ .+.+|.|.-|
T Consensus 328 ~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 328 FGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKGFV-LGNDGVLLRY 396 (398)
T ss_pred cceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCceEE-EeCCcEEEEe
Confidence 358889999888766655 667666553 4455433332 2345688999876 344443 5667877655
No 468
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=64.08 E-value=4.2e+02 Score=34.22 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE-GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~-~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
-...|.++.|+..|. |..|+.|| +..||..+++.++.-.... ..|..+..+-.| .|..|+.+| |.+.+....+..
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 356899999999885 66778888 5678888888777654433 567666666555 466777666 677765542211
Q ss_pred eee-ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEE
Q 000454 321 SVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1491)
Q Consensus 321 ~~L-~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sla 399 (1491)
.-. .-..+.|..+.-..++ .+-.|+..|..+.---+.+-.... .........|.++.
T Consensus 239 n~~~~lp~~~I~ll~qD~qG----~lWiGTenGl~r~~l~rq~Lq~~~------------------~~~~l~~S~vnsL~ 296 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG----ELWIGTENGLWRTRLPRQGLQIPL------------------SKMHLGVSTVNSLW 296 (671)
T ss_pred ccCCCCcchheeeeecccCC----CEEEeecccceeEecCCCCccccc------------------cccCCcccccccee
Confidence 111 1123344444444444 366666666443322211111000 11122334566677
Q ss_pred ECCCCCEEEEecCCceEEEEe
Q 000454 400 FNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 400 fSPDG~~LasGs~DG~IrVWD 420 (1491)
...+|. |.+++.+|.+++-.
T Consensus 297 ~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 297 LDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred eccCCC-EeeeccCceEEEec
Confidence 777776 55666666655543
No 469
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=63.83 E-value=2.2e+02 Score=38.50 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=29.6
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCC
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT 426 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~ 426 (1491)
....|.+++...-+.+++....||.|.++|-.+.+.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~ 293 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKE 293 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchh
Confidence 345678888888888999999999999999877543
No 470
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.13 E-value=40 Score=38.37 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=47.8
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEE-------e-------eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 594 NPRIAMSAGYDGKTIVWDIWEGIPIRIY-------E-------ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 594 d~~lLaSgS~DGtIrIWDl~tGk~l~~l-------~-------~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
.+.+|++...+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.|+..-+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence 4566778899999999999988765332 1 2445788899998898777654 4888999875543
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.01 E-value=80 Score=43.81 Aligned_cols=155 Identities=13% Similarity=0.148 Sum_probs=90.6
Q ss_pred eCCCeEEEEECCCCeEEEEEecCCCCeEEEEE--------cCCCCEEEEEECCCeEEEEECCCC----Cc---e--eeec
Q 000454 262 SDDRLVKIWSMETAYCLASCRGHEGDITDLAV--------SSNNALVASASNDCIIRVWRLPDG----LP---I--SVLR 324 (1491)
Q Consensus 262 S~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf--------SPDG~lLASGS~DGtIrVWDl~tg----k~---i--~~L~ 324 (1491)
+-|..+.+|+..++...+.+.+-...|..|.. -|.=++|+..+.--.|.|+-+.-. .. . ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998888888877777777764 333334444444446777654221 11 1 1122
Q ss_pred cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccC----CCCccceeecCCCCCcccCCCCCC--CCCCCCCCcceEEE
Q 000454 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR----YSQFSPRIYIPRPSDAVAGRNMAP--SSSAGPQSHQIFCC 398 (1491)
Q Consensus 325 gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~----tg~~~~~i~~~~~~~~~~g~~~~~--~~s~~~h~~~V~sl 398 (1491)
.....|.++....+|+ ++.+|.|| .+|.+. .+-+..+.......... .....+ ....+.+..+|..+
T Consensus 176 ~dg~~V~~I~~t~nGR----IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~-ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR----IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSV-LSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred cCCceEEEEEeccCCc----EEEeecCC--CEEEEEEeccCchhhcccccccCchhH-HHHhhhhhhcCCCCCCCcceee
Confidence 2345788888777764 66677777 555442 22111111000000000 000000 11113567789999
Q ss_pred EECCCCCEEEEecCCceEEEEeCCC
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
+....-+.+.+-+..|+|.+|++..
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 9998888999999999999999965
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.66 E-value=58 Score=40.24 Aligned_cols=117 Identities=13% Similarity=0.250 Sum_probs=80.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC----LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD- 316 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~----l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t- 316 (1491)
-.++|.++.||+|.+.||.--.+++|.+++....+. ..+.+..+..|....|+.. .-+|..+..| +-+|-+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 457999999999999999999999999999843322 2334445667999999865 5666666555 66665543
Q ss_pred CCceeeeccCCCceEEEEecCCCCceEEEEEEe-CCCcEEEEccCCC
Q 000454 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYS 362 (1491)
Q Consensus 317 gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS-~DGtVrIWDl~tg 362 (1491)
...++..+.|...|.-..|+++.. . .|++.+ ...++.=+-++++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~-v-~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETA-V-ILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccc-e-EeeeccccccccccEEEeec
Confidence 345666677888999999999875 2 334444 3444444444444
No 473
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=62.46 E-value=4.1e+02 Score=33.92 Aligned_cols=161 Identities=12% Similarity=0.036 Sum_probs=70.7
Q ss_pred CCEEEEE---eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCc--
Q 000454 255 GRYVITG---SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA-- 329 (1491)
Q Consensus 255 G~~LATG---S~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~-- 329 (1491)
|-++++. ...+.+.+.|.. |.....+.........+.+.++|.+++... ..+..+|+- |+.+..+....+.
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred cEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 3345555 344566666754 666555543222221266778998887665 678888874 6655544322111
Q ss_pred -eEEEEecCCCCceEEEEEEeC-------------CCcEEEEccCCCCccceeecCCCCCcccC-----CC--CCCCCCC
Q 000454 330 -VTAIAFSPRPGSVYQLLSSSD-------------DGTCRIWDARYSQFSPRIYIPRPSDAVAG-----RN--MAPSSSA 388 (1491)
Q Consensus 330 -VtsLaFSPdg~s~~~LaSgS~-------------DGtVrIWDl~tg~~~~~i~~~~~~~~~~g-----~~--~~~~~s~ 388 (1491)
=..+.+.|+|. +|+.+.. .-.|..+| .+|+.+....+......... .. .......
T Consensus 191 ~HHD~~~l~nGn---~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 191 FHHDIDELPNGN---LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp B-S-EEE-TTS----EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred cccccEECCCCC---EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence 23566778876 5555551 12255555 66665555433221110000 00 0000011
Q ss_pred CCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCC
Q 000454 389 GPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 389 ~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t 423 (1491)
...--.+.++.+.+ ++.+|+++-.-..|...|..+
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 11223488999988 555666665555777777654
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=60.31 E-value=1.7e+02 Score=39.60 Aligned_cols=125 Identities=12% Similarity=0.089 Sum_probs=79.2
Q ss_pred eeEEEEccC---CCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----eEEEEEecCCCC----------eEEEEEc
Q 000454 234 QNIKRVRGH---RNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETA-----YCLASCRGHEGD----------ITDLAVS 294 (1491)
Q Consensus 234 k~v~tL~GH---~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~Tg-----~~l~tL~gH~~~----------VtsLafS 294 (1491)
.++..|..+ ..+...|+|+| +.+.||.....|...||++..+ ..+.....+.+. -..|.|.
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~ 212 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV 212 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence 444455422 23678899998 5678999999999999999211 111111122233 3478898
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCcee--eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPIS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~--~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
++-+.|+.++.. .+.++|+.+..... ........|..+.-+|...+..+|+|. ..|...++...
T Consensus 213 ~~~~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~~ 278 (765)
T PF10214_consen 213 SDSNRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKSS 278 (765)
T ss_pred CCCCEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccCC
Confidence 887777777654 68999998876533 222345789999999885432233332 45777777654
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=59.54 E-value=1.9e+02 Score=35.36 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC--CCeeEEEEcCCCCEEEEE
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~--~~VtsVafSPDG~~LaSG 558 (1491)
...++.+..+|.|.-.|..+ +..+....... ..+.+-.+..+|+ |+++
T Consensus 68 dg~v~~~~~~G~i~A~d~~~-----------------------------g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g 117 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDT-----------------------------GLVKWSYPLLGAVAQLSGPILGSDGK-IYVG 117 (370)
T ss_pred CCeEEEecCCCcEEEEeCCC-----------------------------CcEEecccCcCcceeccCceEEeCCe-EEEe
Q ss_pred eccceEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCC--cceEEEEEcC
Q 000454 559 IMDCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR--FRLVDGKFSP 635 (1491)
Q Consensus 559 s~DG~IrIWDl~tgkll~tL~gHs-~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~--~~VtslafSP 635 (1491)
+.++.++.+|..+|+++....... -.+..-.+-. ++.+++.. .+|.+...+..+|+.+..+.... ..........
T Consensus 118 ~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~-~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~ 195 (370)
T COG1520 118 SWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG-DGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI 195 (370)
T ss_pred cccceEEEEECCCCcEEEEEecCCCeEEecCcEEc-CcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCcee
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCccc
Q 000454 636 DGASIILSDD--VGQLYILNTGQGESQ 660 (1491)
Q Consensus 636 DG~~LAsgs~--DG~I~IWdl~tG~~~ 660 (1491)
....+..+.. ++.+.-++..+|...
T Consensus 196 ~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 196 ASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred ecceEEEecCCCcceEEEEEccCCcEe
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=58.55 E-value=29 Score=44.72 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=44.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----CeEEEE-Ee----------c-----------CCCCeEEEEEcC----CCCEEEE
Q 000454 253 RSGRYVITGSDDRLVKIWSMET----AYCLAS-CR----------G-----------HEGDITDLAVSS----NNALVAS 302 (1491)
Q Consensus 253 pDG~~LATGS~DGtIrIWDl~T----g~~l~t-L~----------g-----------H~~~VtsLafSP----DG~lLAS 302 (1491)
++...|+.+..||.+....... +..... +. + -...+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4556677777777777766553 222111 11 0 123466677776 7789999
Q ss_pred EECCCeEEEEECCCCCceeeecc
Q 000454 303 ASNDCIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 303 GS~DGtIrVWDl~tgk~i~~L~g 325 (1491)
.+.|+++||||+.++.++....-
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999776543
No 477
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=56.10 E-value=4.8e+02 Score=32.33 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=106.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc----CCCCE--EEEEE-CC---CeEEEEECC--CCCce
Q 000454 253 RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS----SNNAL--VASAS-ND---CIIRVWRLP--DGLPI 320 (1491)
Q Consensus 253 pDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafS----PDG~l--LASGS-~D---GtIrVWDl~--tgk~i 320 (1491)
|...+|+.....+-+.+||+. |+.+..+. .+.+..+..- -+|+. ||.++ .+ ..|++|.+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 455677777888889999997 77777765 2334433321 13442 44443 32 469999775 332 2
Q ss_pred eeecc-------CCCceEEEEecCCC-CceEEEEEEeCCCcEEEEccCC---CCc----cceeecCCCCCcccCCCCCCC
Q 000454 321 SVLRG-------HTAAVTAIAFSPRP-GSVYQLLSSSDDGTCRIWDARY---SQF----SPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 321 ~~L~g-------Hs~~VtsLaFSPdg-~s~~~LaSgS~DGtVrIWDl~t---g~~----~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
..+.. -...++.+|+..+. ....+++....+|.+..|.+.. +.. +..+.
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---------------- 205 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---------------- 205 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----------------
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec----------------
Confidence 22221 12347788874321 1224777888899998887752 221 22221
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec--CCCCCceEEEEccCccccccccc
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYVQFSGCAVASRFSLA 463 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~--gH~~~V~sVafSpdg~as~~s~~ 463 (1491)
...++-.|+.......|+.|-.+.-|.-|+..... ......+.... .....|..|++.....
T Consensus 206 -----~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~----~~~~~~v~~~~g~~l~aDvEGlaly~~~~------- 269 (381)
T PF02333_consen 206 -----VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEG----GNDRTLVASADGDGLVADVEGLALYYGSD------- 269 (381)
T ss_dssp ------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-----S--EEEEEBSSSSB-S-EEEEEEEE-CC-------
T ss_pred -----CCCcceEEEEecccCCEEEecCccEEEEEecCCCC----CCcceeeecccccccccCccceEEEecCC-------
Confidence 23468888998888899999888777777764211 11122232222 2345777777754310
Q ss_pred cCCCCCCCccccccccCCC-eEEEEeCCCeEEEEecCC
Q 000454 464 DSSKEDSTPKFKNSWFCHD-NIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~-~LaSgS~DGtIrIWDl~s 500 (1491)
... +|++.-.+++..||+...
T Consensus 270 ----------------g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 270 ----------------GKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp ----------------C-EEEEEEEGGGTEEEEEESST
T ss_pred ----------------CCeEEEEEcCCCCeEEEEecCC
Confidence 012 455555678899998774
No 478
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=56.08 E-value=34 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=0.0
Q ss_pred EEEEeeCCcceEEEEEcCCCCEEE-EEeCC--CcEEEE
Q 000454 618 IRIYEISRFRLVDGKFSPDGASII-LSDDV--GQLYIL 652 (1491)
Q Consensus 618 l~~l~~h~~~VtslafSPDG~~LA-sgs~D--G~I~IW 652 (1491)
+..+...........|||||++|+ ++..+ |...||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 479
>PRK13613 lipoprotein LpqB; Provisional
Probab=54.39 E-value=6.4e+02 Score=33.25 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=85.8
Q ss_pred cCCC-CEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeE-----EEEEecCCCCeEEEEEcCCCCEEEEEEC--CC--eE
Q 000454 241 GHRN-AVYCAIFDRSGRYVITGSDDR-LVKIWSMETAYC-----LASCRGHEGDITDLAVSSNNALVASASN--DC--II 309 (1491)
Q Consensus 241 GH~~-~Vt~VaFSpDG~~LATGS~DG-tIrIWDl~Tg~~-----l~tL~gH~~~VtsLafSPDG~lLASGS~--DG--tI 309 (1491)
|+.. .+.+++.++++..+|..+.++ .+.+..+..+.. ...+. ...++.-.|.++| .+.+... ++ .+
T Consensus 359 g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl 435 (599)
T PRK13613 359 GSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLL 435 (599)
T ss_pred CCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEE
Confidence 4444 688999999999988877665 566655533322 11222 2346666777777 5555522 22 25
Q ss_pred EEEECCCCCceeee-ccCCC-ceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc-ceeecCCCCCcccCCCCCCCC
Q 000454 310 RVWRLPDGLPISVL-RGHTA-AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 310 rVWDl~tgk~i~~L-~gHs~-~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~-~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
++..- +|.....- ....+ .|..+..++||.....|+-....+.|.|=-+....-- ..+.. ..
T Consensus 436 ~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~--------------~~ 500 (599)
T PRK13613 436 WLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEE--------------FR 500 (599)
T ss_pred EEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeec--------------cE
Confidence 55543 44442210 12223 7999999999973211211222355555433221100 11110 00
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecC-CceEEEEeC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNA 421 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~-DG~IrVWDl 421 (1491)
........+..++|..++.+++.|.. .+...+|.+
T Consensus 501 ~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v 536 (599)
T PRK13613 501 SLAPELEDVTDMSWAGDSQLVVLGREEGGVQQARYV 536 (599)
T ss_pred EeccCCCccceeEEcCCCEEEEEeccCCCCcceEEE
Confidence 11112334899999999988776643 334445544
No 480
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=53.65 E-value=40 Score=26.98 Aligned_cols=41 Identities=10% Similarity=0.006 Sum_probs=29.2
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEE
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF 633 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vtslaf 633 (1491)
|++.+++++.-.++.|.++|..+++.+..+..+. ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence 4455666666678999999999999888887643 3334544
No 481
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=53.52 E-value=54 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=28.5
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 000454 253 RSGRYVITGS-DDRLVKIWSMETAYCLASCRGHEGDITDLAV 293 (1491)
Q Consensus 253 pDG~~LATGS-~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf 293 (1491)
|++++|.++. .+++|.++|..+++.+..+.. ...-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5777776654 578999999999998888775 233344544
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.54 E-value=4.6e+02 Score=31.03 Aligned_cols=260 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 289 tsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
..|+-.|||..-+++...+.|--.|..+|+....--+....-..|..-||+. .-++-+.. -|.-.|-++.. +.++
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~---~Witd~~~-aI~R~dpkt~e-vt~f 139 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS---AWITDTGL-AIGRLDPKTLE-VTRF 139 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC---eeEecCcc-eeEEecCcccc-eEEe
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC---------ceEEEEeCCCCCCCCCCCCCceeeee
Q 000454 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD---------TLARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D---------G~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1491)
.++... .........|.+.|++-+++... +.|++|..
T Consensus 140 ~lp~~~----------------a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa------------------ 185 (353)
T COG4257 140 PLPLEH----------------ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA------------------ 185 (353)
T ss_pred eccccc----------------CCCcccceeeCCCccEEEeeccccceecCcccCceeeecc------------------
Q ss_pred cCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCC
Q 000454 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1491)
Q Consensus 440 ~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~ 519 (1491)
.....-+.|+..|+| ...++.-.+..|...|..+..
T Consensus 186 -PqG~gpyGi~atpdG--------------------------svwyaslagnaiaridp~~~~----------------- 221 (353)
T COG4257 186 -PQGGGPYGICATPDG--------------------------SVWYASLAGNAIARIDPFAGH----------------- 221 (353)
T ss_pred -CCCCCCcceEECCCC--------------------------cEEEEeccccceEEcccccCC-----------------
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEE-EEeCCCCCeEEEEEecCCCcEE
Q 000454 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHPFNPRIA 598 (1491)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~-tL~gHs~~VtsLafSPdd~~lL 598 (1491)
...+............+--+|.|+.-++-...+.+.-||-.+..-+. .|.+....-.++.+.. .+++-
T Consensus 222 ----------aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW 290 (353)
T COG4257 222 ----------AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVW 290 (353)
T ss_pred ----------cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEE
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEE
Q 000454 599 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILS 643 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsg 643 (1491)
++--.-|.|.-+|- .-..+..+......+..+.+.+-+..+-.+
T Consensus 291 ~sea~agai~rfdp-eta~ftv~p~pr~n~gn~ql~gr~ge~W~~ 334 (353)
T COG4257 291 LSEADAGAIGRFDP-ETARFTVLPIPRPNSGNIQLDGRPGELWFT 334 (353)
T ss_pred eeccccCceeecCc-ccceEEEecCCCCCCCceeccCCCCceeec
No 483
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=51.98 E-value=6.5e+02 Score=32.62 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=50.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs-~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
....|..+.|...| .|..|+.|| +..+|..+++.++.-.... ..|..+...-.+ .|..|+.+| |.+.+...
T Consensus 163 ~d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg----~LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG----RLWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC----cEEEEeccc-eEEEchhh
Confidence 35678888888877 566777777 6778888887666554433 567777666666 488888888 77777665
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=51.96 E-value=66 Score=41.52 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=31.0
Q ss_pred CCeeEEEEcC----CCCEEEEEeccceEEEEECCCCceEEEEeCC
Q 000454 541 RGVNMIVWSL----DNRFVLAAIMDCRICVWNAADGSLVHSLTGH 581 (1491)
Q Consensus 541 ~~VtsVafSP----DG~~LaSGs~DG~IrIWDl~tgkll~tL~gH 581 (1491)
..+..++++. +..+|++.+.|++|++||+.+++++.+..-.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3455566666 7789999999999999999999998876543
No 485
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=49.44 E-value=6.7e+02 Score=32.02 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=57.9
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecC-CCCeEEEEEcCCC-CEEEEEECC--CeEEEEECCCCCceeeecc
Q 000454 252 DRSGRYVITGSDDRLVKIWSMETAY--CLASCRGH-EGDITDLAVSSNN-ALVASASND--CIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 252 SpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH-~~~VtsLafSPDG-~lLASGS~D--GtIrVWDl~tgk~i~~L~g 325 (1491)
..++..++-+..+|.+....+.... .....-+. .....++++..+| .+|+.|+.- +.+.-|....-..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 5577889999999999888775433 12222233 4556677776655 477777764 455555533334444444
Q ss_pred CCCceEEEEecCCCC-ceE------EEEEEe---CCCcEEEEc
Q 000454 326 HTAAVTAIAFSPRPG-SVY------QLLSSS---DDGTCRIWD 358 (1491)
Q Consensus 326 Hs~~VtsLaFSPdg~-s~~------~LaSgS---~DGtVrIWD 358 (1491)
.-++|.++++.+... ... .|++++ .+|.+++..
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 457899988864311 111 345543 467888774
No 486
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=48.76 E-value=5.4e+02 Score=30.70 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=40.9
Q ss_pred CCCEEEEEeCCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC
Q 000454 254 SGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRLP 315 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~T--g~~l~tL~gH~~~VtsLafSPDG~lLASGS~-DGtIrVWDl~ 315 (1491)
++++|+.|.++|...+ ++.. +...+.+ +...|+++...+.-+.|++-+. ...++++++.
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 4478999999995544 4554 3344433 4678999999998777766553 3449999984
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.65 E-value=1.4e+02 Score=41.63 Aligned_cols=34 Identities=3% Similarity=0.083 Sum_probs=29.9
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t 571 (1491)
.+..+|..+++...-..+.+-+..|+|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999998888999999999999999965
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=47.41 E-value=3.3e+02 Score=32.32 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=88.3
Q ss_pred CEEEEEEcCCCCEEEE--EeC----------CCeEEEEECCCCeEEEEEec------CCCCeEEEEEcCCC-----CEEE
Q 000454 245 AVYCAIFDRSGRYVIT--GSD----------DRLVKIWSMETAYCLASCRG------HEGDITDLAVSSNN-----ALVA 301 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LAT--GS~----------DGtIrIWDl~Tg~~l~tL~g------H~~~VtsLafSPDG-----~lLA 301 (1491)
.|..+...++|++-+. |.- .-.|.+||+.+++.++++.- ....+.++++.... .++.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4777888887764332 311 13799999999999888752 24567788887622 2333
Q ss_pred EE-ECCCeEEEEECCCCCceeeeccCC-------------------CceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 302 SA-SNDCIIRVWRLPDGLPISVLRGHT-------------------AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 302 SG-S~DGtIrVWDl~tgk~i~~L~gHs-------------------~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
.+ +..+-|.|+|+.+++..+.+..+. ..+..++.+|-......|+-....+ -++|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence 33 334689999999886655443221 2255555555211101344333322 12232221
Q ss_pred CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 362 g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
..+...- ..... .........+........++++++|.++++--..+.|..|+..+
T Consensus 161 ~~L~~~~----~~~~~--~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 161 SVLRDPS----LSDAQ--ALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp HHHCSTT------HHH---HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred HHhhCcc----ccccc--cccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 1100000 00000 00000000011123456788899999999988999999999864
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=46.92 E-value=5.9e+02 Score=30.64 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=36.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEec-----cc-----------eEEEEECCC-CceEE----EEeC-----CCCCeEEEEE
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIM-----DC-----------RICVWNAAD-GSLVH----SLTG-----HTESTYVLDV 590 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~-----DG-----------~IrIWDl~t-gkll~----tL~g-----Hs~~VtsLaf 590 (1491)
...+..+-+|+++|+|+.|+++.. |+ .|..||..+ +.... .+.. ....|..+.+
T Consensus 143 ~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~a 222 (326)
T PF13449_consen 143 RRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAA 222 (326)
T ss_pred ccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEE
Confidence 345677899999999997666532 22 244455544 32332 2222 3456888888
Q ss_pred ecCCCcEEE
Q 000454 591 HPFNPRIAM 599 (1491)
Q Consensus 591 SPdd~~lLa 599 (1491)
-++ +++|+
T Consensus 223 l~d-~~lLv 230 (326)
T PF13449_consen 223 LPD-GRLLV 230 (326)
T ss_pred ECC-CcEEE
Confidence 884 44443
No 490
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=46.30 E-value=1.1e+03 Score=33.62 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=16.9
Q ss_pred CCCCCeeEEEEcCCCCEEEEEec
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
.+-..+.++|.+|||..+++-..
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCC
Confidence 44556788999999988776433
No 491
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=46.02 E-value=23 Score=26.62 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHH
Q 000454 51 EVYFLIMHFLSTGPCHRTYGQFWNE 75 (1491)
Q Consensus 51 e~~flI~hfL~~gp~~~aa~~L~~e 75 (1491)
++.++|..||..-....+|+.|.+|
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~E 26 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKE 26 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 6889999999999999999999876
No 492
>PRK13615 lipoprotein LpqB; Provisional
Probab=45.78 E-value=8.2e+02 Score=31.98 Aligned_cols=158 Identities=8% Similarity=-0.001 Sum_probs=89.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCCceee-ec
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGLPISV-LR 324 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~-tgk~i~~-L~ 324 (1491)
.+++.+++|..+|....++.+.++... +.....+. ...++.-.|.++| .+.+.-.....++.... +|..... ..
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 788999999999988888888888765 22222232 2346666787777 66666554445555443 2333211 11
Q ss_pred -cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC-CCcccee-ecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 325 -GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY-SQFSPRI-YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 325 -gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t-g~~~~~i-~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
.-.+.|..+..++||.....|+.....+.|.|--+.. +.....+ .. ..........+.+++|.
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~--------------p~~l~~~l~~v~sl~W~ 478 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTT--------------PLELLASPGTPLDATWV 478 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeec--------------cEEcccCcCcceeeEEc
Confidence 1235799999999997322222233345566543322 1111111 00 00011123378999999
Q ss_pred CCCCEEEEec---CCceEEEEeCC
Q 000454 402 ANGTVFVTGS---SDTLARVWNAC 422 (1491)
Q Consensus 402 PDG~~LasGs---~DG~IrVWDl~ 422 (1491)
.++.+++.+. .+..+++..+.
T Consensus 479 ~~~~laVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 479 DELDVATLTLAPDGERQVELHQVG 502 (557)
T ss_pred CCCEEEEEeccCCCCceEEEEECC
Confidence 9998766653 23456666653
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.59 E-value=1.3e+02 Score=35.72 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCCceeeecc-----CCCceEE
Q 000454 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS------NDCIIRVWRLPDGLPISVLRG-----HTAAVTA 332 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS------~DGtIrVWDl~tgk~i~~L~g-----Hs~~Vts 332 (1491)
-.-|++||..+.+-...-.+-.+.|++|.|..+.++++.|. ....+..||+.+..- ..+.+ -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 34699999887765555555678899999997777888774 345688899876543 22322 2478888
Q ss_pred EEecCCCCceEEEEEEe-CCCc--EEEEcc
Q 000454 333 IAFSPRPGSVYQLLSSS-DDGT--CRIWDA 359 (1491)
Q Consensus 333 LaFSPdg~s~~~LaSgS-~DGt--VrIWDl 359 (1491)
+.+....... ..+.|. .+|. |..||-
T Consensus 94 ~~~~~~d~~~-~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSN-FWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCce-EEEeceecCCCceEEEEcC
Confidence 8886544321 333333 3333 555653
No 494
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=44.26 E-value=4.1e+02 Score=28.11 Aligned_cols=105 Identities=7% Similarity=0.011 Sum_probs=63.2
Q ss_pred EEcCCCCEEEEEeccceEEEEECCCC--------ceEEEEeCCCCCeEEEEEecCC----CcEEEEEeCCCcEEEEeCCC
Q 000454 547 VWSLDNRFVLAAIMDCRICVWNAADG--------SLVHSLTGHTESTYVLDVHPFN----PRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 547 afSPDG~~LaSGs~DG~IrIWDl~tg--------kll~tL~gHs~~VtsLafSPdd----~~lLaSgS~DGtIrIWDl~t 614 (1491)
.|......|++++.-|+|.|++.... ..+..|. -...|++|+-.+.. ...|+.|+ ...|.+||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 45555667888999999999987533 2334443 34568888766542 34555454 56799999987
Q ss_pred CceEEEEeeCCcceEEEEE---cCCCCEEEEEeCCCcEEEEEC
Q 000454 615 GIPIRIYEISRFRLVDGKF---SPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 615 Gk~l~~l~~h~~~Vtslaf---SPDG~~LAsgs~DG~I~IWdl 654 (1491)
..-+..-. -...|.++.+ .....-|+..+.+..|.-||.
T Consensus 83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred Cchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 65543322 2345665544 332334444444466666664
No 495
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.21 E-value=2.1e+02 Score=39.87 Aligned_cols=31 Identities=3% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECCC
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t 571 (1491)
.....++|+|.-.++|.++..|.|++|-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3456789999999999999999999987643
No 496
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=42.29 E-value=6.8e+02 Score=30.01 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=91.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL---ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL- 318 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l---~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk- 318 (1491)
.+-+..+.|+.+ ++..+..+.-++|.|+.+...- ..+. -.+--.++..+ |+++..+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~vs--Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEec--CCEEEEeeccCcEEEEECCCCCC
Confidence 355667777754 5555556667999999765432 2222 12334455554 8888888866667888887653
Q ss_pred --ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 319 --PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 319 --~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
....+.........++.+-+ +-..+..|+-+.|.|+........+.. ......+.
T Consensus 161 P~lagrya~~~~d~~~v~ISGn-----~AYvA~~d~GL~ivDVSnp~sPvli~~------------------~n~g~g~~ 217 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAISGN-----YAYVAWRDGGLTIVDVSNPHSPVLIGS------------------YNTGPGTY 217 (370)
T ss_pred ceeeeeeccCCCCceeEEEecC-----eEEEEEeCCCeEEEEccCCCCCeEEEE------------------EecCCceE
Confidence 33344445555577777765 567777888899999876543222200 11222577
Q ss_pred EEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 397 CCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 397 slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
++..+++-.+++... .-+.+-|...
T Consensus 218 sv~vsdnr~y~vvy~--egvlivd~s~ 242 (370)
T COG5276 218 SVSVSDNRAYLVVYD--EGVLIVDVSG 242 (370)
T ss_pred EEEecCCeeEEEEcc--cceEEEecCC
Confidence 777777766666553 2355556543
No 497
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=41.77 E-value=7.4e+02 Score=30.32 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=8.6
Q ss_pred CCCCEEEEecCC
Q 000454 402 ANGTVFVTGSSD 413 (1491)
Q Consensus 402 PDG~~LasGs~D 413 (1491)
-++++++.|+.+
T Consensus 138 ~~~~IYv~GG~~ 149 (376)
T PRK14131 138 HNGKAYITGGVN 149 (376)
T ss_pred eCCEEEEECCCC
Confidence 467788888764
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=41.71 E-value=6.7e+02 Score=29.81 Aligned_cols=180 Identities=8% Similarity=0.024 Sum_probs=0.0
Q ss_pred CCCEEEEecCC-----ceEEEEeCCCCCCCCCCCCC----ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 403 NGTVFVTGSSD-----TLARVWNACKPNTDDSDQPN----HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 403 DG~~LasGs~D-----G~IrVWDl~t~~~~~s~~~~----~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
++.+++.|+.+ ..+..||+.+ ... ..+..+...........+...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~-------~~w~~~~~~~~~lp~~~~~~~~~~~~~~------------------- 125 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDE-------SKEELICETIGNLPFTFENGSACYKDGT------------------- 125 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcC-------CceeeeeeEcCCCCcCccCceEEEECCE-------------------
Q ss_pred ccccccCCCeEEEEeC-----CCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000454 474 FKNSWFCHDNIVTCSR-----DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~-----DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1491)
.++.|+. ...+..||+.+.+ -...............+.
T Consensus 126 ---------iYv~GG~~~~~~~~~v~~yd~~~~~----------------------------W~~~~~~p~~~r~~~~~~ 168 (323)
T TIGR03548 126 ---------LYVGGGNRNGKPSNKSYLFNLETQE----------------------------WFELPDFPGEPRVQPVCV 168 (323)
T ss_pred ---------EEEEeCcCCCccCceEEEEcCCCCC----------------------------eeECCCCCCCCCCcceEE
Q ss_pred cCCCCEEEEEecc----ceEEEEECCCCceEEEEe-----CCCCCeEEEEEecCCCcEEEEEeCC---------------
Q 000454 549 SLDNRFVLAAIMD----CRICVWNAADGSLVHSLT-----GHTESTYVLDVHPFNPRIAMSAGYD--------------- 604 (1491)
Q Consensus 549 SPDG~~LaSGs~D----G~IrIWDl~tgkll~tL~-----gHs~~VtsLafSPdd~~lLaSgS~D--------------- 604 (1491)
..++++.+.|+.+ ..+.+||..+.+-...-. ..........+...++.+++.||.+
T Consensus 169 ~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 248 (323)
T TIGR03548 169 KLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMK 248 (323)
T ss_pred EECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhcc
Q ss_pred ----------------------CcEEEEeCCCCceEEEEeeC-CcceEEEEEcCCCCEEEEEeC
Q 000454 605 ----------------------GKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSDD 645 (1491)
Q Consensus 605 ----------------------GtIrIWDl~tGk~l~~l~~h-~~~VtslafSPDG~~LAsgs~ 645 (1491)
..|.+||+.+.+-...-... ..........-++++.++|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 249 DESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred chhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
No 499
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.76 E-value=5.1e+02 Score=29.58 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=59.8
Q ss_pred CCCEEEEEec--cceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcce
Q 000454 551 DNRFVLAAIM--DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL 628 (1491)
Q Consensus 551 DG~~LaSGs~--DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~V 628 (1491)
+|.++.+.+. ...|++||+.+|+.+..-.-....+..=-....+..+.+-.-.+|.-.++|..+.+++..+.. .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 5555555543 346999999999887754322222221111111344444556788899999999888887763 2222
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 629 VDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 629 tslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+.+ ..|+..|+.++....+..-|..
T Consensus 134 WgL--t~d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 134 WGL--TSDDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred eee--ecCCcceEeeCCceEEEecCHH
Confidence 333 3456667666665566655543
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=39.69 E-value=5.4e+02 Score=34.14 Aligned_cols=160 Identities=11% Similarity=0.121 Sum_probs=86.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE--EEe-cCCCCeEEEEEcC------CCCEEEEEEC-C---CeE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA--SCR-GHEGDITDLAVSS------NNALVASASN-D---CII 309 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~--tL~-gH~~~VtsLafSP------DG~lLASGS~-D---GtI 309 (1491)
.+.|-.|.|.++++.+++.-..|.|.+||...+.... .+. .+...|.-=.|-+ ...++++.+. . -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5789999999999999999999999999993332211 222 1222221113322 2234544444 2 246
Q ss_pred EEEEC-CCCCceeeec---cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 310 RVWRL-PDGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 310 rVWDl-~tgk~i~~L~---gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
+++.+ .....+..+. .+........|+-..+ .|+.- .+++|.+|.+..-+....+.++.-.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G---~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii----------- 273 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFG---KLYQL-SKKTISSYSIPNFQIQKTISLPSII----------- 273 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCC---EEEEE-eCCEEEEEEcCCceEEEEEEechhh-----------
Confidence 77777 1222333332 2222333444444433 23333 6788999999887777666543111
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~ 422 (1491)
......+.++.--...+.|++ .+..|++.|+.
T Consensus 274 ---~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~ 305 (670)
T PF10395_consen 274 ---DKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLK 305 (670)
T ss_pred ---ccccccceEeecCCCCeEEEE--cCCEEEEEeeh
Confidence 001123334333223344443 35789999984
Done!