Query 000454
Match_columns 1491
No_of_seqs 1152 out of 4766
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 16:02:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000454.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_234-238//hhsearch_pdb/000454hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 1.0 1 1 442.2 52.6 501 190-782 16-598 (611)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 440.1 56.2 577 125-779 539-1192(1249)
3 2ymu_A WD-40 repeat protein; u 1.0 1 1 422.5 59.0 487 189-778 13-562 (577)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 417.2 50.0 443 235-778 607-1098(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 414.1 55.4 376 233-683 6-407 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 411.0 50.8 429 234-755 138-610 (611)
7 3mkq_A Coatomer beta'-subunit; 1.0 1 1 385.3 47.5 432 232-780 2-483 (814)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 384.6 48.3 488 190-754 15-659 (902)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 381.9 42.9 466 239-774 13-631 (902)
10 1pgu_A Actin interacting prote 1.0 1 1 379.9 49.2 380 188-675 14-420 (615)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=442.18 Aligned_cols=501 Identities=15% Similarity=0.193 Sum_probs=370.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 77111024420012676210267873010001345777322343058998167987899999689999999908976999
Q 000454 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1491)
Q Consensus 190 ~h~d~V~~l~~r~~Gg~~~~~~~~~sl~~~~~~~a~~~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkI 269 (1491)
.+...+..+.+.+.|.. ++... ...+..|.....+.+.+|.+|...|++++|+|+|++||+|+.|++|+|
T Consensus 16 ~~~g~~~~~~~spdg~~---------l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~l 85 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDK---------IQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI 85 (611)
T ss_dssp CCTTCCCCCEECTTSSE---------EEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEECCCCCE---------EEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 40682369766799997---------99679-997999457872427376589986599999999968999948997899
Q ss_pred EECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEE
Q ss_conf 987889--1889970689996999995799999999799----8199997999986033126777559999537999507
Q 000454 270 WSMETA--YCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343 (1491)
Q Consensus 270 WDl~Tg--~~l~tL~gH~~~ItsIafSPDg~lLASGS~D----GtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~ 343 (1491)
||+.++ .....+.+|.+.|.+++|+|++++|++++.+ +.|++|+ .+..+..+.+|...|.+++|+|++. .
T Consensus 86 Wd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~--~ 161 (611)
T 1nr0_A 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP--F 161 (611)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS--C
T ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCC--E
T ss_conf 48989841566762255784489998999997999989977366999963--8997632547889836999889998--2
Q ss_pred EEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
Q ss_conf 99999289919997067787654251379997324888788888999996328999877998899930895199980899
Q 000454 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 344 ~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t 423 (1491)
.|++++.|++|++||....++...+ ..|...|.+++|+|+|.+|++++.|+.|++|++.+
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~~~l--------------------~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCEEEEEECCCCEEEEEE--------------------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 9999928980999979997576652--------------------00257169999979999899998999199988999
Q ss_pred CCCCCCCCCCCEEEEEC-------CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 99989999984022104-------88898107998267512223335688788886455555678808999279809999
Q 000454 424 PNTDDSDQPNHEIDVLS-------GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1491)
Q Consensus 424 ~~~~~s~~~~~~i~~l~-------gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIW 496 (1491)
+ ..+..+. +|.+.|.+++|+|++ ..|++++.|++|++|
T Consensus 222 g---------~~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------------------~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 222 G---------TKTGVFEDDSLKNVAHSGSVFGLTWSPDG--------------------------TKIASASADKTIKIW 266 (611)
T ss_dssp C---------CEEEECBCTTSSSCSSSSCEEEEEECTTS--------------------------SEEEEEETTSEEEEE
T ss_pred C---------CEEEEECCCCCCCCCCCCCEEEEEECCCC--------------------------CEEEEEECCCEEEEE
T ss_conf 8---------28665136643235667878999997999--------------------------999999089809999
Q ss_pred ECCCCCCCCCCCCCC----CCCCCCCCC----------CCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 268888885322211----112457999----------999999999999400069999722999947998999995466
Q 000454 497 IPRSRRSHPKAARWT----QAYHLKVPP----------PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1491)
Q Consensus 497 Dl~s~k~~~~~~~~~----~~~~l~~~~----------~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG 562 (1491)
|+.+++......... ......... ...............+.+|...|++++|+|+|++|++++.|+
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 68887013440478876640689997388799995899689996889974469837888889999918999899995898
Q ss_pred EEEEEECCCCCEEEEE-ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE------------------------
Q ss_conf 3999988999458998-079988499999139994999995899199996899922------------------------
Q 000454 563 RICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP------------------------ 617 (1491)
Q Consensus 563 ~I~IWDl~tgkli~tL-~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~------------------------ 617 (1491)
.|++||+.++.+...+ .+|...|.+++|++ ++ .+++++.|+.+++|++..+..
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTS-KG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECT-TS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CEEEEECCCCCEEEECCCCCCCEEEEEEECC-CC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCC
T ss_conf 4999978879256321667765078999878-99-699998489668954688543565212001489970799807996
Q ss_pred -----------------EEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC-------CCCCCCEEEECCCC
Q ss_conf -----------------899860786468999948999999995898199999899831-------24651003560898
Q 000454 618 -----------------IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES-------QKDAKYDQFFLGDY 673 (1491)
Q Consensus 618 -----------------i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~-------~~~~~~~~~fs~D~ 673 (1491)
+..+. +...+.+++|+|||++||+++.||.|++|++..+.. .......+.|++|+
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg 503 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 503 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS
T ss_pred EEEEEECCEEEEEECCCEEEEE-CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCC
T ss_conf 9999967639998489434640-688954999928998999968997399999459922241015778860799998999
Q ss_pred CCEEECCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCCEEEC
Q ss_conf 626981699779711323574223798-5655667789994100111001540018995899829995188889808931
Q 000454 674 RPLVQDTYGNVLDQETQLAPHRRNLQD-PLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQ 752 (1491)
Q Consensus 674 r~Li~d~~g~vLde~tq~~p~Lw~l~~-~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~v~lw 752 (1491)
+.|+.......+ .+|++.. +.+.... ....+...+..++|+|||++||++ +.|+.+.+|
T Consensus 504 ~~las~s~d~~v--------~~w~~~~~~~~~~~~---------~~~~H~~~V~~v~fspdg~~lasg---s~D~~v~lW 563 (611)
T 1nr0_A 504 AFLVATDQSRKV--------IPYSVANNFELAHTN---------SWTFHTAKVACVSWSPDNVRLATG---SLDNSVIVW 563 (611)
T ss_dssp SEEEEEETTSCE--------EEEEGGGTTEESCCC---------CCCCCSSCEEEEEECTTSSEEEEE---ETTSCEEEE
T ss_pred CEEEEECCCCCE--------EEEECCCCCCEEEEE---------EEEECCCCEEEEEECCCCCEEEEE---ECCCCEEEE
T ss_conf 989999489989--------998857787223210---------264046642589989989979999---799729999
Q ss_pred CCCCCCC----CCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 2788662----23588-423555434558767789
Q 000454 753 PLADLDV----MIDPL-PEFIDVMDWEPENEVQSD 782 (1491)
Q Consensus 753 p~~~~~~----li~pl-p~~i~~i~W~Pe~ev~s~ 782 (1491)
++..+.. ....+ ...+..+.|.|+..+++.
T Consensus 564 ~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~ 598 (611)
T 1nr0_A 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 598 (611)
T ss_dssp ETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEE
T ss_pred ECCCCCCCCCHHHCCCCCCCEEEEEECCCCEEEEE
T ss_conf 78875556326444676567118998589979995
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=440.08 Aligned_cols=577 Identities=17% Similarity=0.175 Sum_probs=386.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC---------CCCC---CCCC-CCCCCCCC
Q ss_conf 999999999870389864335899999775321025786354324322-48---------8866---9999-88789987
Q 000454 125 HLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRD-KG---------QNEI---DHPP-AHMRWPHM 190 (1491)
Q Consensus 125 ~Ll~~l~r~i~~~~~~i~~~~~~~~P~~~~vssLlg~g~~SLl~~~~~-~~---------~~~~---~~p~-~~~r~p~~ 190 (1491)
..++++++|+..+.+.+ ...|.+.+...++..+..+.+..... .. ...| +.+. ........
T Consensus 539 ~~~~~~~~~l~~~~~~l-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1249)
T 3sfz_A 539 AVCENFQEFLSLNGHLL-----GRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRP 613 (1249)
T ss_dssp CHHHHHHHHHHHHHTTT-----TSSSCCCHHHHHHTSCTTSHHHHHHHHHHHTTCSSSCCCCCCGGGTTCSCCCSEEECC
T ss_pred HHHHHHHHHHHHCCEEE-----ECCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEC
T ss_conf 99999999997363551-----1265645201002799742478887653034788874999973676556532278716
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 71110244200126762102678730100013457773223430589981679878999996899999999089769999
Q 000454 191 YADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW 270 (1491)
Q Consensus 191 h~d~V~~l~~r~~Gg~~~~~~~~~sl~~~~~~~a~~~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIW 270 (1491)
|.+.|..+.+.+.| ..+++++.+..+..|...+.+.+.++.+|.+.|++++|+|+|++||+++.|+.|+||
T Consensus 614 h~~~v~~~~~s~~~---------~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 614 HTDAVYHACFSQDG---------QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CSSCEEEEEECTTS---------SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCCEEEEEECCCC---------CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 66648999987999---------989999488949999989997888760677778999992699989998189959998
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 8788918899706899969999957--99999999799819999799998603312677755999953799950799999
Q 000454 271 SMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 271 Dl~Tg~~l~tL~gH~~~ItsIafSP--Dg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSg 348 (1491)
|+.+++++..+.+|...|.+++|+| ++.++++++.|+.|++||+.++.++..+.+|...|++++|+|++. +|+++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~ 761 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLASC 761 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT---EEEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCC---EEEEE
T ss_conf 779993689995899737999984089965999980897099998999634220127779788999925999---89999
Q ss_pred ECCCCEEEECCCCCCCCCEEECCCCCCCC-----------CCCCC------------------------CCCCCCCCCCC
Q ss_conf 28991999706778765425137999732-----------48887------------------------88888999996
Q 000454 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAV-----------AGRNM------------------------APSSSAGPQSH 393 (1491)
Q Consensus 349 S~DGtIrIWDl~tg~~i~~i~~~~~~~~~-----------~g~~~------------------------~~~~~~~~h~~ 393 (1491)
+.||.|++||+.++.....+......... ..... ........+..
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS 841 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred ECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCC
T ss_conf 78985999968888655302023210246776445650179999978998899975895999995689723577478777
Q ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32899987799889993089519998089999989999984022104888981079982675122233356887888864
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
.+.+++|+|++.++++++.++.|++|++.+ ...+..+.+|...|.++.|+|++
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---------~~~~~~~~~h~~~v~~v~~spdg------------------ 894 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDS---------RLKVADCRGHLSWVHGVMFSPDG------------------ 894 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS------------------
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCC---------CCEEEECCCCCCCEEEEEECCCC------------------
T ss_conf 607999827888899994798699998678---------95653227876656899998999------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC---CC------CCCCCCCCCCCCCCCCCCCEECCCCCCCEE
Q ss_conf 555556788089992798099992688888853222111---12------457999999999999999400069999722
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ---AY------HLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~---~~------~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
..+++++.||.|++|++.............. .. ....... ....................+.
T Consensus 895 --------~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 895 --------SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI-RGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp --------SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS-SSEEEEEESSCCEEEECCSCEE
T ss_pred --------CEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCEEEEECCCCEEEECCCCCEE
T ss_conf --------9899995897289887466520102113310368975998689981377-6248984476508972567278
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 99994799899999546639999889994589980799884999991399949999958991999968999228998607
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 545 sIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h 624 (1491)
+++|+|++.++++|+.+|.|++|++.++..+..+.+|...|++++|+| ++.++++++.||.|++|++.++..+. +..|
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~ 1043 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVF-LQAH 1043 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEEC-CBCC
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEE-EECC
T ss_conf 999958997799986999889997578723443036777168999989-99989998699879999879996689-8527
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC------CCCCEEEECCCCCCEEECCCCCEEECCCCCCCCCCCC
Q ss_conf 8646899994899999999589819999989983124------6510035608986269816997797113235742237
Q 000454 625 RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNL 698 (1491)
Q Consensus 625 ~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~------~~~~~~~fs~D~r~Li~d~~g~vLde~tq~~p~Lw~l 698 (1491)
...|.++.|+|++ .+++++.+|.|++|++.+++... .....+.|++++..++.......+ .+|++
T Consensus 1044 ~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v--------~iwd~ 1114 (1249)
T 3sfz_A 1044 QETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA--------KIWSF 1114 (1249)
T ss_dssp SSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCC--------CEECS
T ss_pred CCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCE--------EEEEC
T ss_conf 8738999990899-58999788968998889886558874668848999998999989998499948--------99878
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCCEEECCCCCCCCCCC-----------CCCCC
Q ss_conf 9856556677899941001110015400189958998299951888898089312788662235-----------88423
Q 000454 699 QDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID-----------PLPEF 767 (1491)
Q Consensus 699 ~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~v~lwp~~~~~~li~-----------plp~~ 767 (1491)
..+.+...... +...+..++|+|||.+||++ +.|+.+.+|++.++..+.. .....
T Consensus 1115 ~~~~~~~~l~~-----------h~~~v~~~~~s~dg~~lat~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1249)
T 3sfz_A 1115 DLLSPLHELKG-----------HNGCVRCSAFSLDGILLATG---DDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180 (1249)
T ss_dssp SSSSCSBCCCC-----------CSSCEEEEEECSSSSEEEEE---ETTSCCCEEESSSSCCCCCCCCCC-------CCSC
T ss_pred CCCCEEEEECC-----------CCCCEEEEEECCCCCEEEEE---ECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 98500125506-----------87767999997999989998---28997999988999457885144444210256742
Q ss_pred CCCCCCCCCCCC
Q ss_conf 555434558767
Q 000454 768 IDVMDWEPENEV 779 (1491)
Q Consensus 768 i~~i~W~Pe~ev 779 (1491)
+..+.|.|+...
T Consensus 1181 v~~l~fs~dg~~ 1192 (1249)
T 3sfz_A 1181 VTDVCFSPDSKT 1192 (1249)
T ss_dssp CCEEEECTTSSC
T ss_pred EEEEEECCCCCE
T ss_conf 899999789998
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=422.48 Aligned_cols=487 Identities=21% Similarity=0.325 Sum_probs=263.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 87711102442001267621026787301000134577732234305899816798789999968999999990897699
Q 000454 189 HMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVK 268 (1491)
Q Consensus 189 ~~h~d~V~~l~~r~~Gg~~~~~~~~~sl~~~~~~~a~~~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIk 268 (1491)
.+|.+.|..+++.+.|..+ +++..+..+-.|+ ...+++++|.||.+.|++++|+|||++||+++.|++|+
T Consensus 13 ~GH~~~V~~~a~spdg~~l---------as~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~ 82 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTI---------ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 82 (577)
T ss_dssp CCCSSCEEEEEECTTSSCE---------EEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCCEEEEEECCCCCEE---------EEEECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 7899857999998998999---------9993899899997-99978999968989989999989999999996989799
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC------------------------------
Q ss_conf 99878891889970689996999995799999999799819999799998------------------------------
Q 000454 269 IWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL------------------------------ 318 (1491)
Q Consensus 269 IWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk------------------------------ 318 (1491)
|||+ +++++..+.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 83 vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 83 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp EEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCC
T ss_conf 9989-997899997899988999998999989998079833520235520011047777435554203776320025553
Q ss_pred ----------CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf ----------6033126777559999537999507999992899199970677876542513799973248887888889
Q 000454 319 ----------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 319 ----------~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~ 388 (1491)
.......|...|.++.|+|++. +|++++.|+.|++|+.. ++....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~~w~~~-~~~~~~~-------------------- 217 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ---TIASASDDKTVKLWNRN-GQLLQTL-------------------- 217 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSS---CEEEEETTSEEEEECTT-SCEEEEE--------------------
T ss_pred CEECCCCCEEEEEECCCCCCCEEEEEECCCCC---EEEEECCCCEEEEEECC-CCEEEEE--------------------
T ss_conf 10000000000000268776356654169977---89998599989999499-9689999--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC----CC
Q ss_conf 99996328999877998899930895199980899999899999840221048889810799826751222333----56
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL----AD 464 (1491)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~----~~ 464 (1491)
..+...|.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.++.|+|++....... ..
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~----------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT----------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC----------CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 4688988999997999999999189989999599----------979999806889879999968999999995999799
Q ss_pred CCCCCC---------CCCC--CCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 887888---------8645--55556788089992798099992688888853222111124579999999999999994
Q 000454 465 SSKEDS---------TPKF--KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 465 ~~~~~~---------~~~~--~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
.+.... .... .....+...+++++.||.|++|+... ...
T Consensus 288 ~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~------------------------------~~~ 337 (577)
T 2ymu_A 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG------------------------------QHL 337 (577)
T ss_dssp EEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS------------------------------CEE
T ss_pred EEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC------------------------------CEE
T ss_conf 99489958999706889769999999999999996999599996999------------------------------725
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 00069999722999947998999995466399998899945899807998849999913999499999589919999689
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 534 ~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
..+..|...+.+++|+|++++|++++.|+.|++|+. +++++..+.+|...|.+++|+| ++++|++++.|+.|++|+.
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~- 414 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR- 414 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEC-
T ss_conf 787478897799999899999999969998999908-9978998527889748999989-9999999949998999969-
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC------CCCCEEEECCCCCCEEECCCCCEEEC
Q ss_conf 992289986078646899994899999999589819999989983124------65100356089862698169977971
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQDTYGNVLDQ 687 (1491)
Q Consensus 614 tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~------~~~~~~~fs~D~r~Li~d~~g~vLde 687 (1491)
+++.+..+..|...|++++|+||+++|++++.|+.|.+|+.. ++... .....+.|++|+..|+.......+.
T Consensus 415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~- 492 (577)
T 2ymu_A 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK- 492 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE-
T ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE-
T ss_conf 997898962889975799998999999999399989999799-988999727899778999969999999991989799-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCCEEECCCCCCCCC--CCCCC
Q ss_conf 1323574223798565566778999410011100154001899589982999518888980893127886622--35884
Q 000454 688 ETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM--IDPLP 765 (1491)
Q Consensus 688 ~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~v~lwp~~~~~~l--i~plp 765 (1491)
+|+. ++.+.... .++...+..++|+|||++||++ +.|+.+.+|+.. ++.+ +..+.
T Consensus 493 -------iw~~-~~~~~~~~-----------~~h~~~v~~l~~s~dg~~l~s~---~~dg~v~lwd~~-~~~~~~~~~h~ 549 (577)
T 2ymu_A 493 -------LWNR-NGQLLQTL-----------TGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNRN-GQLLQTLTGHS 549 (577)
T ss_dssp -------EEET-TSCEEEEE-----------ECCSSCEEEEEECTTSSCEEEE---ETTSEEEEECTT-SCEEEEEECCS
T ss_pred -------EECC-CCCEEEEE-----------ECCCCCEEEEEECCCCCEEEEE---ECCCEEEEEECC-CCEEEEECCCC
T ss_conf -------9939-99789998-----------6799998999991899999999---896999999699-97898971888
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 2355543455876
Q 000454 766 EFIDVMDWEPENE 778 (1491)
Q Consensus 766 ~~i~~i~W~Pe~e 778 (1491)
..+..+.|.|+..
T Consensus 550 ~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 550 SSVWGVAFSPDGQ 562 (577)
T ss_dssp SCEEEEEECTTSS
T ss_pred CCEEEEEECCCCC
T ss_conf 8878999968999
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=417.16 Aligned_cols=443 Identities=16% Similarity=0.219 Sum_probs=314.1
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 58998167987899999689999999908976999987889188997068999699999579999999979981999979
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 235 ~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl 314 (1491)
....+.+|.+.|++++|+|+|++||+|+.||.|+||++.++..+..+.+|...|.+++|+|++++|++++.|+.|+|||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 22787166664899998799998999948894999998999788876067777899999269998999818995999877
Q ss_pred CCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99986033126777559999537999507999992899199970677876542513799973248887888889999963
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~ 394 (1491)
.+++++..+.+|...|.+++|+|++.. .++++++.||.|++||+.++.+...+ ..|...
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~--------------------~~h~~~ 745 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNH-LLLATGSNDFFLKLWDLNQKECRNTM--------------------FGHTNS 745 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSC-CEEEEEETTSCEEEEETTSSSEEEEE--------------------CCCSSC
T ss_pred CCCCEEEEECCCCCCEEEEEEECCCCC-EEEEEEECCCEEEEEECCCCCHHHEE--------------------CCCCCC
T ss_conf 999368999589973799998408996-59999808970999989996342201--------------------277797
Q ss_pred EEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCC----CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 289998779988999308951999808999998999998----4022104888981079982675122233356887888
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN----HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1491)
Q Consensus 395 V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~----~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~ 470 (1491)
|.+++|+|++.+|++++.||.|++|++.++......... ............+.++.|+|++
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--------------- 810 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--------------- 810 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS---------------
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCC---------------
T ss_conf 88999925999899997898599996888865530202321024677644565017999997899---------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECC
Q ss_conf 86455555678808999279809999268888885322211112457999999999999999400069999722999947
Q 000454 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1491)
Q Consensus 471 ~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSP 550 (1491)
..+++++ ++.+.+|++.+.... ......|...+.+++|+|
T Consensus 811 -----------~~l~~~~-~~~v~~~d~~~~~~~----------------------------~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 811 -----------DKIIVAA-KNKVLLFDIHTSGLL----------------------------AEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp -----------SEEEEEE-TTEEEEEETTTCCEE----------------------------EEEECSSSSCCCEEEECS
T ss_pred -----------CEEEEEC-CCCEEEEEECCCCCE----------------------------EEECCCCCCCEEEEEECC
T ss_conf -----------8899975-895999995689723----------------------------577478777607999827
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-------------
Q ss_conf 9989999954663999988999458998079988499999139994999995899199996899922-------------
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP------------- 617 (1491)
Q Consensus 551 DG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~------------- 617 (1491)
++.++++++.++.|++|++.++..+..+.+|...|++++|+| ++.++++++.||.|++|++..+..
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 888899994798699998678956532278766568999989-9998999958972898874665201021133103689
Q ss_pred ----------------EEEE--------EECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC------CCCCEE
Q ss_conf ----------------8998--------6078646899994899999999589819999989983124------651003
Q 000454 618 ----------------IRIY--------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQ 667 (1491)
Q Consensus 618 ----------------i~~l--------~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~------~~~~~~ 667 (1491)
+..+ ......+.+++|+|++.++++++.+|.|.+|++.+++... .....+
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE
T ss_pred ECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEE
T ss_conf 75998689981377624898447650897256727899995899779998699988999757872344303677716899
Q ss_pred EECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCC
Q ss_conf 56089862698169977971132357422379856556677899941001110015400189958998299951888898
Q 000454 668 FFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQ 747 (1491)
Q Consensus 668 ~fs~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~ 747 (1491)
.|++++..++.......+ .+|++..+.+... . .+...+..++|+|++..++. +.|+
T Consensus 1010 ~~s~dg~~l~s~~~dg~i--------~vwd~~~~~~~~~-~-----------~~~~~v~~~~~~~~~~l~~~----~~dg 1065 (1249)
T 3sfz_A 1010 QFTADGKTLISSSEDSVI--------QVWNWQTGDYVFL-Q-----------AHQETVKDFRLLQDSRLLSW----SFDG 1065 (1249)
T ss_dssp EECSSSSCEEEECSSSBE--------EEEETTTTEEECC-B-----------CCSSCEEEEEECSSSEEEEE----ESSS
T ss_pred EECCCCCEEEEECCCCEE--------EEEECCCCCEEEE-E-----------CCCCCEEEEEECCCCCEEEE----ECCC
T ss_conf 998999989998699879--------9998799966898-5-----------27873899999089958999----7889
Q ss_pred CEEECCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 0893127886622--358842355543455876
Q 000454 748 GYQLQPLADLDVM--IDPLPEFIDVMDWEPENE 778 (1491)
Q Consensus 748 ~v~lwp~~~~~~l--i~plp~~i~~i~W~Pe~e 778 (1491)
.+.+|++.++..+ +......+..+.|.|+..
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 1098 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCCCCEEECSSSS
T ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCC
T ss_conf 689988898865588746688489999989999
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=414.13 Aligned_cols=376 Identities=24% Similarity=0.413 Sum_probs=251.7
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 30589981679878999996899999999089769999878891889970689996999995799999999799819999
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
.+..++|+||.+.|+|++|+|||++||+|+.|++|+|||. +++++.++.+|...|++++|+|++++||+++.|+.|+||
T Consensus 6 ~~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 3894398789985799999899899999938998999979-997899996898998999998999999999698979999
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEEC----------CCCCCCC-----
Q ss_conf 7999986033126777559999537999507999992899199970677876542513----------7999732-----
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI----------PRPSDAV----- 377 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~----------~~~~~~~----- 377 (1491)
|+ +++++..+.+|...|.+++|+|++. +|++++.|+.+++|+............ +......
T Consensus 85 d~-~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 85 NR-NGQLLQTLTGHSSSVRGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp ET-TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EC-CCCEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCC
T ss_conf 89-9978999978999889999989999---8999807983352023552001104777743555420377632002555
Q ss_pred -----CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf -----488878888899999632899987799889993089519998089999989999984022104888981079982
Q 000454 378 -----AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452 (1491)
Q Consensus 378 -----~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafS 452 (1491)
.............+...+.++.|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----------~~~~~~~~~~~~~v~~~~~s 230 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVRGVAFS 230 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------SCEEEEEECCSSCEEEEEEC
T ss_pred CCEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC----------CCEEEEEECCCCCEEEEEEC
T ss_conf 31000000000000026877635665416997789998599989999499----------96899994688988999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67512223335688788886455555678808999279809999268888885322211112457999999999999999
Q 000454 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1491)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 532 (1491)
|++ ..+++++.|+.|++|+... ..
T Consensus 231 ~dg--------------------------~~l~~~~~d~~i~~w~~~~------------------------------~~ 254 (577)
T 2ymu_A 231 PDG--------------------------QTIASASDDKTVKLWNRNG------------------------------QL 254 (577)
T ss_dssp TTS--------------------------SCEEEEETTSCEEEECTTS------------------------------CE
T ss_pred CCC--------------------------CEEEEEECCCEEEEEECCC------------------------------CE
T ss_conf 999--------------------------9999991899899995999------------------------------79
Q ss_pred CEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 40006999972299994799899999546639999889994589980799884999991399949999958991999968
Q 000454 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 533 ~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
...+..|...|++++|+|++++|++++.|+.|++|+. +++++..+.+|...|++++|+| ++.++++++.|+.|++|++
T Consensus 255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEEC
T ss_conf 9998068898799999689999999959997999948-9958999706889769999999-9999999969995999969
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC------CCCCEEEECCCCCCEEECCCCC
Q ss_conf 9992289986078646899994899999999589819999989983124------6510035608986269816997
Q 000454 613 WEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQDTYGN 683 (1491)
Q Consensus 613 ~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~------~~~~~~~fs~D~r~Li~d~~g~ 683 (1491)
++..+..+..|...+.+++|+|+|++|++++.+|.|.+|+.. ++... .....+.|++|++.|+......
T Consensus 333 -~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 333 -NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf -997257874788977999998999999999699989999089-978998527889748999989999999994999
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=411.05 Aligned_cols=429 Identities=15% Similarity=0.187 Sum_probs=200.4
Q ss_pred EEEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 05899816798789999968999-99999089769999878891889970689996999995799999999799819999
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 234 k~i~tL~GH~~~VtsIaFSpDGk-~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
+.+.++.+|...|++++|+|++. +|++|+.|++|++|+..+++++.++.+|...|.+++|+|++++||+++.|+.|++|
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 97632547889836999889998299999289809999799975766520025716999997999989999899919998
Q ss_pred ECCCCCCEEEEC-------CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCC---------
Q ss_conf 799998603312-------6777559999537999507999992899199970677876542513799973---------
Q 000454 313 RLPDGLPISVLR-------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA--------- 376 (1491)
Q Consensus 313 Dl~tgk~i~~L~-------gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~--------- 376 (1491)
++.++.++..+. +|.+.|.+++|+|++. +|++++.|++|++||+.++++...+........
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT---KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCC---EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECC
T ss_conf 89998286651366432356678789999979999---999990898099996888701344047887664068999738
Q ss_pred ---CC-----------CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEE-CC
Q ss_conf ---24-----------8887888889999963289998779988999308951999808999998999998402210-48
Q 000454 377 ---VA-----------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SG 441 (1491)
Q Consensus 377 ---~~-----------g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l-~g 441 (1491)
+. ...........+|...|.+++|+|+|.+|++++.|+.|++|++.++ .....+ .+
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~---------~~~~~~~~~ 365 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG---------ISNRVFPDV 365 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------CEEECSSCS
T ss_pred CEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCC---------CEEEECCCC
T ss_conf 87999958996899968899744698378888899999189998999958984999978879---------256321667
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88981079982675122233356887888864555556788089992798099992688888853222111124579999
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
|...|.++.|++++ .+++++.|+.+++|++..........
T Consensus 366 h~~~v~~~~~s~~~---------------------------~l~s~s~d~~v~~w~~~~~~~~~~~~------------- 405 (611)
T 1nr0_A 366 HATMITGIKTTSKG---------------------------DLFTVSWDDHLKVVPAGGSGVDSSKA------------- 405 (611)
T ss_dssp CSSCEEEEEECTTS---------------------------CEEEEETTTEEEEECSSSSSSCTTSC-------------
T ss_pred CCCEEEEEEECCCC---------------------------CEEEEECCCCEEEEECCCCCCCCCCE-------------
T ss_conf 76507899987899---------------------------69999848966895468854356521-------------
Q ss_pred CCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf 99999999999400069999722999947998999995466399998899945899807998849999913999499999
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSg 601 (1491)
........+..++|+|+|..++++ .+..+++|+ .++ +..+. |...+.+++|+| ++++++++
T Consensus 406 -------------~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasg 466 (611)
T 1nr0_A 406 -------------VANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVG 466 (611)
T ss_dssp -------------CEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEE
T ss_pred -------------EEEECCCCCCEEEEECCCCEEEEE-ECCEEEEEE--CCC-EEEEE-CCCCCEEEEEEC-CCCEEEEE
T ss_conf -------------200148997079980799699999-676399984--894-34640-688954999928-99899996
Q ss_pred ECCCCEEEEECCCCCE--EEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CCCCC--------CCCCEEEEC
Q ss_conf 5899199996899922--899860786468999948999999995898199999899-83124--------651003560
Q 000454 602 GYDGKTIVWDIWEGIP--IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ-GESQK--------DAKYDQFFL 670 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~--i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~t-Gk~~~--------~~~~~~~fs 670 (1491)
+.|+.|++|++..+.. +.. ..|...|++++|+|||++|++++.|+.|++|++.+ ++... .....+.|+
T Consensus 467 s~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 467 GQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp ETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEEC
T ss_conf 899739999945992224101-5778860799998999989999489989998857787223210264046642589989
Q ss_pred CCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-CCCCCCEEECCCCCEEEEEECCCCCCCE
Q ss_conf 898626981699779711323574223798565566778999410011100-1540018995899829995188889808
Q 000454 671 GDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQR-RLGALGIEWRPSSLKLAVGPDFSLDQGY 749 (1491)
Q Consensus 671 ~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~-~~~vl~lafSPDG~~LAvg~d~S~D~~v 749 (1491)
+|++.|+.......+ .+|++..+.... .....++ ...+..++|+|++. |+++ +.|+.+
T Consensus 546 pdg~~lasgs~D~~v--------~lW~~~~~~~~~---------~~~~~~h~~~~v~~v~fs~d~~-l~s~---~~D~~i 604 (611)
T 1nr0_A 546 PDNVRLATGSLDNSV--------IVWNMNKPSDHP---------IIIKGAHAMSSVNSVIWLNETT-IVSA---GQDSNI 604 (611)
T ss_dssp TTSSEEEEEETTSCE--------EEEETTCTTSCC---------EEETTSSTTSCEEEEEEEETTE-EEEE---ETTSCE
T ss_pred CCCCEEEEEECCCCE--------EEEECCCCCCCC---------CHHHCCCCCCCEEEEEECCCCE-EEEE---CCCCCE
T ss_conf 989979999799729--------999788755563---------2644467656711899858997-9995---288778
Q ss_pred EECCCC
Q ss_conf 931278
Q 000454 750 QLQPLA 755 (1491)
Q Consensus 750 ~lwp~~ 755 (1491)
++|++.
T Consensus 605 ~lW~~~ 610 (611)
T 1nr0_A 605 KFWNVP 610 (611)
T ss_dssp EEEECC
T ss_pred EEEECC
T ss_conf 998444
No 7
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=385.26 Aligned_cols=432 Identities=18% Similarity=0.210 Sum_probs=341.9
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 43058998167987899999689999999908976999987889188997068999699999579999999979981999
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 232 t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrI 311 (1491)
+++..+++.+|.+.|+|++|+|+|.+||+++.||.|+||++.++..+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 96500045058985689998899998999947998999989999167787338996889999689998999928994999
Q ss_pred EECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9799998603312677755999953799950799999289919997067787-654251379997324888788888999
Q 000454 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 312 WDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~-~i~~i~~~~~~~~~~g~~~~~~~~~~~ 390 (1491)
|++.++..+..+.+|...|++++|+|++. +|++++.||.|++|++.++. ....+ ..
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~--------------------~~ 138 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQTF--------------------EG 138 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSEEEEEEGGGTSEEEEEE--------------------EC
T ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCC---EEEEECCCCEEEEEECCCCCEEEEEE--------------------CC
T ss_conf 98999958799816899789999958999---89999289989999899995487998--------------------37
Q ss_pred CCCCEEEEEECC-CCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEC-CCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 996328999877-99889993089519998089999989999984022104-8889810799826751222333568878
Q 000454 391 QSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSGCAVASRFSLADSSKE 468 (1491)
Q Consensus 391 h~~~V~sIafSP-DG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1491)
|...|.+++|+| ++..|++++.||.|++|++..+ .....+. .+...+.++.|+|..
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~------------- 196 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLP------------- 196 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCCCEEEECCST-------------
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC---------CCEEEEECCCCCCEEEEEEEECC-------------
T ss_conf 99868899997699999999948894999989999---------61069835888977999999779-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88864555556788089992798099992688888853222111124579999999999999994000699997229999
Q 000454 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1491)
++..+++++.||.|++||+.+++ ....+..|...|.+++|
T Consensus 197 -----------~~~~l~~~~~dg~i~~~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 197 -----------DKPYMITASDDLTIKIWDYQTKS-----------------------------CVATLEGHMSNVSFAVF 236 (814)
T ss_dssp -----------TCCEEEEECTTSEEEEEETTTTE-----------------------------EEEEEECCSSCEEEEEE
T ss_pred -----------CCCEEEEEECCCEEEEEECCCCC-----------------------------EEEEECCCCCCEEEEEE
T ss_conf -----------99899999389979999999991-----------------------------88998478888789998
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-------
Q ss_conf 4799899999546639999889994589980799884999991399949999958991999968999228998-------
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY------- 621 (1491)
Q Consensus 549 SPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l------- 621 (1491)
+|++.+|++++.||.|++||+.+++.+..+..|...+++++|+|++..++++++.++.+.+|++..+.....+
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCCEE
T ss_conf 59999999990899699998999947778406888679999924999509999907987999767997416777998789
Q ss_pred ------------------------------------EECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCC-CCCC
Q ss_conf ------------------------------------607864689999489999999958981999998998312-4651
Q 000454 622 ------------------------------------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ-KDAK 664 (1491)
Q Consensus 622 ------------------------------------~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~-~~~~ 664 (1491)
..+...+.+++|+|+|++|++++ +|.+.+|++...... ....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i 395 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAFGKC 395 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCE
T ss_conf 97763664112466530465555567620146511788765774068999999899942-98899998745445679954
Q ss_pred CEEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCC---CEEEEEE
Q ss_conf 0035608986269816997797113235742237985655667789994100111001540018995899---8299951
Q 000454 665 YDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSS---LKLAVGP 741 (1491)
Q Consensus 665 ~~~~fs~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG---~~LAvg~ 741 (1491)
....|++|+..++.......+. +|.... ++...+..++|+|+| .+|+++
T Consensus 396 ~~~~~spdg~~la~~~~~g~v~--------l~~~~~-------------------~~~~~v~~~~~s~dg~~~~~l~~~- 447 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDETGQIK--------YYKNFK-------------------EVTSWSVPMHSAIDRLFSGALLGV- 447 (814)
T ss_dssp SEEEECTTSSCEEEECTTCCEE--------EEETTE-------------------ECTTCCCCCSSCCCEEECSSSEEE-
T ss_pred EEEEEECCCCEEEEEECCCCEE--------EEECCC-------------------CCCCEEECCCCCCCCEECCEEEEE-
T ss_conf 7999947998599996898399--------997777-------------------752439737867552365469999-
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 888898089312788662235884235554345587677
Q 000454 742 DFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQ 780 (1491)
Q Consensus 742 d~S~D~~v~lwp~~~~~~li~plp~~i~~i~W~Pe~ev~ 780 (1491)
+.++.+.+|++.++..+... ......+.|.|+...+
T Consensus 448 --~~d~~v~~~d~~~~~~~~~~-~~~~~~v~~s~dg~~l 483 (814)
T 3mkq_A 448 --KSDGFVYFFDWDNGTLVRRI-DVNAKDVIWSDNGELV 483 (814)
T ss_dssp --EETTEEEEECTTTCCEEEEE-SSCEEEEEECTTSSEE
T ss_pred --ECCCEEEEEECCCCCEEEEE-ECCCCEEEECCCCCEE
T ss_conf --66998999998769599997-3588879996999999
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=384.56 Aligned_cols=488 Identities=11% Similarity=0.055 Sum_probs=331.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 77111024420012676210267873010001345777322343058998167987899999689999999908976999
Q 000454 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1491)
Q Consensus 190 ~h~d~V~~l~~r~~Gg~~~~~~~~~sl~~~~~~~a~~~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkI 269 (1491)
+|...|..+.|.+.+. .++++..+..+-.|.....+.+..+ .|...|++++|+| |++|++++.|++|+|
T Consensus 15 gh~~~V~~lafspdg~---------~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQN---------LLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp ECSSCEEEEEEETTTT---------EEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CCCCCCEEEEECCCCC---------EEEEEECCCEEEEEECCCCEEEEEC-CCCCCEEEEEECC-CCEEEEEECCCEEEE
T ss_conf 8899848999979999---------8999929798999968994799986-8999779999908-988999989595999
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE-----------EEECCCCCCEEEEEECCC
Q ss_conf 987889188997068999699999579999999979981999979999860-----------331267775599995379
Q 000454 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-----------SVLRGHTAAVTAIAFSPR 338 (1491)
Q Consensus 270 WDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i-----------~~L~gHs~~VtsIafSPd 338 (1491)
||+.+++++..+. |...|++++|+|++.+|++|+.||.|++||+.++... ..+.+|.+.|++++|+|+
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 9899996899974-899879999879999899994999299999999962650304321000254457897389997669
Q ss_pred CCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 99507999992899199970677876542513799973248887888889999963289998779988999308951999
Q 000454 339 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418 (1491)
Q Consensus 339 g~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrI 418 (1491)
+. ..|++++.||.| +||+++++....+....+.....+... ......|...|.+++|+|+|.+|++++.|+.|++
T Consensus 163 ~~--~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DI--GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS--EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EE--EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC--CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CC--CEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 99--989999189849-998778965799833557767776544--3323456777689998599999999989993999
Q ss_pred EECCCCCCCCCCCCCCEEEEEC-------------CCCCCCEEEEECC----CC-C--CCC-CC------CCCCCC-C--
Q ss_conf 8089999989999984022104-------------8889810799826----75-1--222-33------356887-8--
Q 000454 419 WNACKPNTDDSDQPNHEIDVLS-------------GHENDVNYVQFSG----CA-V--ASR-FS------LADSSK-E-- 468 (1491)
Q Consensus 419 WDl~t~~~~~s~~~~~~i~~l~-------------gH~~~V~sIafSp----dg-~--as~-~s------~~~~~~-~-- 468 (1491)
||+.+++.... +.+.... .|...|.+++|++ ++ . +.. .. ....+. .
T Consensus 238 Wd~~~g~~~~~----r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~ 313 (902)
T 2oaj_A 238 WDANSGHMIMA----RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYT 313 (902)
T ss_dssp EETTTCCEEEE----ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEEC
T ss_pred EECCCCCEEEE----EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCC
T ss_conf 98789968888----85012345787776788885556774579997349998878999688777788852899954789
Q ss_pred --------------------CC------CCC---CC-----CCC----CCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf --------------------88------864---55-----555----67880899927980999926888888532221
Q 000454 469 --------------------DS------TPK---FK-----NSW----FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 469 --------------------~~------~~~---~~-----~~~----~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
.. ... +. ..+ .++..+++++.||.|++|++.++.........
T Consensus 314 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~ 393 (902)
T 2oaj_A 314 PRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLF 393 (902)
T ss_dssp CCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGS
T ss_pred CCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 87555425565466417452278741899954799997788988677878506999917984899978999855655568
Q ss_pred CCCCCCCCCCCCCC---CC-----------CCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-
Q ss_conf 11124579999999---99-----------9999994000699997229999479989999954663999988999458-
Q 000454 511 TQAYHLKVPPPPMP---PQ-----------PPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV- 575 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~---~~-----------~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli- 575 (1491)
... +........ .. .........+.+|...+..++|+|++++|++|+.|++|++||+.++.+.
T Consensus 394 ~~~--l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 394 PQN--LSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp CGG--GTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred CCC--CCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCC
T ss_conf 985--223589724899997499999888860469997545785778753336667589996589838999787764567
Q ss_pred ---EE--EE-----CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC------------------------------
Q ss_conf ---99--80-----799884999991399949999958991999968999------------------------------
Q 000454 576 ---HS--LT-----GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG------------------------------ 615 (1491)
Q Consensus 576 ---~t--L~-----gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tG------------------------------ 615 (1491)
.. +. +|...|++++|+| ++++||+|+.||+|+||++.++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CCEEEEECHHHCCCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 736775015413778887646999638-9996999945857999992486555754557786651134551346796543
Q ss_pred ---------------CEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCEEECC
Q ss_conf ---------------22899860786468999948999999995898199999899831246510035608986269816
Q 000454 616 ---------------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDT 680 (1491)
Q Consensus 616 ---------------k~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~~~~~~~~fs~D~r~Li~d~ 680 (1491)
+++..+..|...|++++||||| +||+|+.|+.|+|||+.++..+....
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~---------------- 613 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMEN---------------- 613 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEE----------------
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEE----------------
T ss_conf 2242368988777601469998688867799964876-89999589769999888983999702----------------
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEC-----CCC---CEEEEEECCCCCCCEEEC
Q ss_conf 997797113235742237985655667789994100111001540018995-----899---829995188889808931
Q 000454 681 YGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWR-----PSS---LKLAVGPDFSLDQGYQLQ 752 (1491)
Q Consensus 681 ~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafS-----PDG---~~LAvg~d~S~D~~v~lw 752 (1491)
+..+. .++...+..++|| ||| ++|+++ +.|+++++|
T Consensus 614 --------------~~~~~-------------------~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg---s~D~tv~~w 657 (902)
T 2oaj_A 614 --------------IREIS-------------------GAQSACVTCIEFVIMEYGDDGYSSILMVCG---TDMGEVITY 657 (902)
T ss_dssp --------------GGGTC-------------------SSCCCCEEEEEEEEEECTTSSSEEEEEEEE---ETTSEEEEE
T ss_pred --------------HHHHC-------------------CCCCCCEEEEEEEEEECCCCCCCCEEEEEE---ECCCCEEEE
T ss_conf --------------46726-------------------466661399999998417898763389999---568739999
Q ss_pred CC
Q ss_conf 27
Q 000454 753 PL 754 (1491)
Q Consensus 753 p~ 754 (1491)
++
T Consensus 658 d~ 659 (902)
T 2oaj_A 658 KI 659 (902)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=381.88 Aligned_cols=466 Identities=11% Similarity=0.093 Sum_probs=279.3
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 81679878999996899999999089769999878891889970689996999995799999999799819999799998
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 239 L~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk 318 (1491)
..||.+.|+|++|+|++++||+|+.||+|+||+..+......+. |...|.+++|+| +++|++++.|+.|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCC
T ss_conf 16889984899997999989999297989999689947999868-999779999908-9889999895959999899996
Q ss_pred CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 60331267775599995379995079999928991999706778765425137999732488878888899999632899
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sI 398 (1491)
++..+. |...|++++|+|++. +|++++.||.|++||+.++.+. .+..+..... ......|...|.++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~---~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~--------~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLD---WMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS--------SFFPAARLSPIVSI 157 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCS---EEEEEETTSCEEEEETTTTEEE-EEEECCHHHH--------HTCSSSCCCCCCEE
T ss_pred EEEEEC-CCCCEEEEEECCCCC---EEEEECCCCCEEEEECCCCCCC-CCEECCCCCC--------CCCCCCCCCCEEEE
T ss_conf 899974-899879999879999---8999949992999999999626-5030432100--------02544578973899
Q ss_pred EECCC-CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECC------------------CCCCCEEEEECCCCCCCC
Q ss_conf 98779-98899930895199980899999899999840221048------------------889810799826751222
Q 000454 399 AFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG------------------HENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 399 afSPD-G~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~g------------------H~~~V~sIafSpdg~as~ 459 (1491)
+|+|+ +..|++|+.|+.| +||+.+. ..+..+.. |...|.+++|+|++
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg---- 223 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVEN---------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS---- 223 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTT---------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS----
T ss_pred EECCCCCCEEEEEECCCCE-EEECCCC---------CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC----
T ss_conf 9766999989999189849-9987789---------6579983355776777654433234567776899985999----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCC-------------------CCCCCCCCC--
Q ss_conf 33356887888864555556788089992798099992688888853222-------------------111124579--
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR-------------------WTQAYHLKV-- 518 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~-------------------~~~~~~l~~-- 518 (1491)
..|++++.||.|++||+.+++....... ......+..
T Consensus 224 ----------------------~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 224 ----------------------LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp ----------------------SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred ----------------------CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf ----------------------9999998999399998789968888850123457877767888855567745799973
Q ss_pred --CCC--C-CC-C-CC--CCCCCC----------------------------EECC--CCCCCEEEEEECC---------
Q ss_conf --999--9-99-9-99--999994----------------------------0006--9999722999947---------
Q 000454 519 --PPP--P-MP-P-QP--PRGGPR----------------------------QRIL--PTPRGVNMIVWSL--------- 550 (1491)
Q Consensus 519 --~~~--~-~~-~-~~--~~~~~~----------------------------~~l~--~h~~~VtsIafSP--------- 550 (1491)
.+. . +. . .. .....+ .... .+...+..+++.+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred CCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCC
T ss_conf 49998878999688777788852899954789875554255654664174522787418999547999977889886778
Q ss_pred -CCCEEEEEECCCEEEEEECCCCCEEEE-----------------------------------------EECCCCCEEEE
Q ss_conf -998999995466399998899945899-----------------------------------------80799884999
Q 000454 551 -DNRFVLAAIMDCRICVWNAADGSLVHS-----------------------------------------LTGHTESTYVL 588 (1491)
Q Consensus 551 -DG~~LaSgs~DG~I~IWDl~tgkli~t-----------------------------------------L~gHs~~VtsI 588 (1491)
+...+++++.|+.|++|++.++..... +.+|...+..+
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 78506999917984899978999855655568985223589724899997499999888860469997545785778753
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEE--EEEE---------ECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 991399949999958991999968999228--9986---------07864689999489999999958981999998998
Q 000454 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPI--RIYE---------ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 589 afSPdd~~lLaSgS~DGtIrIWDl~tGk~i--~~l~---------~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+|+| ++.++++|+.|++|++||+.++... ..+. .|...|++++|+|||++||+|+.||.|+||++.++
T Consensus 442 ~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 442 LPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred CCCC-CCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC
T ss_conf 3366-675899965898389997877645677367750154137788876469996389996999945857999992486
Q ss_pred CCCCCCCCEE--EECCCCCC--EEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCC
Q ss_conf 3124651003--56089862--6981699779711323574223798565566778999410011100154001899589
Q 000454 658 ESQKDAKYDQ--FFLGDYRP--LVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPS 733 (1491)
Q Consensus 658 k~~~~~~~~~--~fs~D~r~--Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPD 733 (1491)
+......... ....++.. +. .......+......+ .+. +.+.| ....+++.-.+..++||||
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~-~g~~~-----------~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLN-NTNGVLVDVRDRAPT-GVR-QGFMP-----------STAVHANKGKTSAINNSNI 586 (902)
T ss_dssp CC---------------CCSCCGG-GSSCSEEECGGGCCT-TCS-EEEEE-----------EEEECCCSCSEEEEEECBT
T ss_pred CCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCC-CCC-CCCCE-----------EEEEECCCCCEEEEEECCC
T ss_conf 555754557786651134551346-796543224236898-877-76014-----------6999868886779996487
Q ss_pred CCEEEEEECCCCCCCEEECCCCCCCCCC--------CCCCCCCCCCCCC
Q ss_conf 9829995188889808931278866223--------5884235554345
Q 000454 734 SLKLAVGPDFSLDQGYQLQPLADLDVMI--------DPLPEFIDVMDWE 774 (1491)
Q Consensus 734 G~~LAvg~d~S~D~~v~lwp~~~~~~li--------~plp~~i~~i~W~ 774 (1491)
| +||+| +.|+.+.+|++.++..+. ..+...+..+.|.
T Consensus 587 G-~lAsg---s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 587 G-FVGIA---YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp S-EEEEE---ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred C-EEEEE---ECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEE
T ss_conf 6-89999---589769999888983999702467264666613999999
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=379.86 Aligned_cols=380 Identities=13% Similarity=0.185 Sum_probs=274.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC----EEEEEECCCCCC-EEEEEECC--CCCEEEE
Q ss_conf 9877111024420012676210267873010001345777322343----058998167987-89999968--9999999
Q 000454 188 PHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKM----QNIKRVRGHRNA-VYCAIFDR--SGRYVIT 260 (1491)
Q Consensus 188 p~~h~d~V~~l~~r~~Gg~~~~~~~~~sl~~~~~~~a~~~~~v~t~----k~i~tL~GH~~~-VtsIaFSp--DGk~LAT 260 (1491)
|..|...|..+.+.+.|..++ ... ......|...+. +.+..+.+|.+. |++++|+| ++++||+
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~---------~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIA---------YPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEE---------EEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEE---------EEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 877658536899889999799---------935-9849999777887765143188057884499999796789988999
Q ss_pred EECCCEEEEEECCCC--------EEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCCEEEECCCCC
Q ss_conf 908976999987889--------1889970689996999995799999999799----8199997999986033126777
Q 000454 261 GSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWRLPDGLPISVLRGHTA 328 (1491)
Q Consensus 261 GS~DGtIkIWDl~Tg--------~~l~tL~gH~~~ItsIafSPDg~lLASGS~D----GtIrIWDl~tgk~i~~L~gHs~ 328 (1491)
|+.||.|+||++.++ ..+..+.+|...|.+++|+|++++|++++.+ +.|++|+ .+..+..+.+|..
T Consensus 84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~ 161 (615)
T 1pgu_A 84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ 161 (615)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECCCC
T ss_conf 64898799976888765544554200011125663799999079998999316877755799997--8981031306774
Q ss_pred CEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEECCC-C
Q ss_conf 55999953799950799999289919997067787654251379997324888788888999996---3289998779-9
Q 000454 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH---QIFCCAFNAN-G 404 (1491)
Q Consensus 329 ~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~---~V~sIafSPD-G 404 (1491)
.|.+++|+|++. ..+++++.|+.|++||+.+++....+. .|.. .|.+++|+|+ +
T Consensus 162 ~v~~~~~~~~~~--~~l~~~~~d~~v~vwd~~~~~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 162 RINACHLKQSRP--MRSMTVGDDGSVVFYQGPPFKFSASDR--------------------THHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp CEEEEEECSSSS--CEEEEEETTTEEEEEETTTBEEEEEEC--------------------SSSCTTCCEEEEEECSTTC
T ss_pred CEEEEEECCCCC--CEEEEEECCCCEEEEECCCCCEEEEEC--------------------CCCCCCCEEEEEEECCCCC
T ss_conf 388999887899--689999579959999699961013202--------------------5677774289999789778
Q ss_pred CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEE-C---CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999308951999808999998999998402210-4---8889810799826751222333568878888645555567
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-S---GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 405 ~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l-~---gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
.+|++++.|+.|++|++.+ ...+..+ . .|...|.++.|+ ++
T Consensus 220 ~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~v~~~~~~-~~------------------------- 264 (615)
T 1pgu_A 220 EFVITVGSDRKISCFDGKS---------GEFLKYIEDDQEPVQGGIFALSWL-DS------------------------- 264 (615)
T ss_dssp CEEEEEETTCCEEEEETTT---------CCEEEECCBTTBCCCSCEEEEEES-SS-------------------------
T ss_pred CEEEEEECCCEEEEEECCC---------CCEEEEECCCCCCCCCCEEEEEEC-CC-------------------------
T ss_conf 8899986898089998999---------978589525444567755899981-89-------------------------
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 88089992798099992688888853222111124579999999999999994000699997229999479989999954
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~ 560 (1491)
..+++++.||.|++||+.+.+........ .......+.++.|+ ++.++++++.
T Consensus 265 -~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~-~~~~l~~~~~ 317 (615)
T 1pgu_A 265 -QKFATVGADATIRVWDVTTSKCVQKWTLD-------------------------KQQLGNQQVGVVAT-GNGRIISLSL 317 (615)
T ss_dssp -SEEEEEETTSEEEEEETTTTEEEEEEECC-------------------------TTCGGGCEEEEEEE-ETTEEEEEET
T ss_pred -CEEEEECCCCCEEEEECCCCCEEEEECCC-------------------------CCCCCCCEEEEEEC-CCCEEEEEEC
T ss_conf -97999848994899978889278788478-------------------------77545714699918-9976999978
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEE
Q ss_conf 66399998899945899807998849999913999499999589919999689992289986078646899994899999
Q 000454 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASI 640 (1491)
Q Consensus 561 DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~L 640 (1491)
++.|++||+.+++++..+.+|...|.+++| | + +++++.||.|++|++. .+. ..|...|.+++| +++.+|
T Consensus 318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~-~~~~~l 386 (615)
T 1pgu_A 318 DGTLNFYELGHDEVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDN-SKAQEY 386 (615)
T ss_dssp TSCEEEEETTEEEEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETTTT---EEE--CCCCSCEEEEEC-CSTTCC
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEEEEEE-C-C---CEEECCCCEEEEEECH---HHC--CCCCCCEEEEEE-CCCCEE
T ss_conf 997899988899288999477787899995-6-7---4898799959998752---415--755685179997-898679
Q ss_pred EEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCC
Q ss_conf 99958981999998998312465100356089862
Q 000454 641 ILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRP 675 (1491)
Q Consensus 641 Asgs~DG~I~IWdl~tGk~~~~~~~~~~fs~D~r~ 675 (1491)
++++.||.|.+|++..++... .+....|+++...
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~-~~~~~~~s~~~~~ 420 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGS-QPKVASANNDGFT 420 (615)
T ss_dssp EEEETTTEEEETTEEEEECSS-CEEEEEECSSSEE
T ss_pred EEEECCCCEEEEECCCCCCCC-CCEEEEECCCCCE
T ss_conf 999589979998866676367-8469998289878
Done!