Query 000455
Match_columns 1487
No_of_seqs 227 out of 275
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1833 Nuclear pore complex, 100.0 8.1E-38 1.7E-42 366.2 35.6 664 559-1419 2-678 (679)
2 KOG1833 Nuclear pore complex, 99.9 9.5E-25 2.1E-29 257.0 14.3 437 980-1460 2-466 (679)
3 smart00635 BID_2 Bacterial Ig- 97.8 7.5E-05 1.6E-09 70.7 9.0 70 994-1064 3-77 (81)
4 PF02368 Big_2: Bacterial Ig-l 97.7 5.5E-05 1.2E-09 71.1 5.6 70 84-160 2-71 (79)
5 smart00635 BID_2 Bacterial Ig- 97.7 0.00023 5E-09 67.4 9.2 71 84-161 2-74 (81)
6 PF02368 Big_2: Bacterial Ig-l 97.6 6E-05 1.3E-09 70.9 4.6 64 996-1060 5-71 (79)
7 TIGR00864 PCC polycystin catio 97.6 1.2 2.5E-05 64.9 77.5 727 85-1061 1342-2112(2740)
8 TIGR00864 PCC polycystin catio 95.4 26 0.00057 51.9 106.8 436 799-1343 1513-1982(2740)
9 COG5492 Bacterial surface prot 93.0 5.8 0.00013 47.8 19.5 141 884-1061 179-324 (329)
10 COG5492 Bacterial surface prot 92.3 13 0.00029 44.7 21.3 133 202-380 189-322 (329)
11 PF13629 T2SS-T3SS_pil_N: Pilu 85.4 6.2 0.00013 36.6 9.1 52 110-161 7-61 (72)
12 PF13629 T2SS-T3SS_pil_N: Pilu 79.6 6.6 0.00014 36.4 7.0 57 1322-1394 5-61 (72)
13 PF13584 BatD: Oxygen toleranc 63.5 65 0.0014 40.9 13.0 96 894-997 19-115 (484)
14 PF06832 BiPBP_C: Penicillin-B 57.5 29 0.00063 33.3 6.4 61 803-869 16-80 (89)
15 PF08770 SoxZ: Sulphur oxidati 57.3 1.2E+02 0.0026 30.2 10.7 84 889-984 1-95 (100)
16 smart00634 BID_1 Bacterial Ig- 53.1 76 0.0017 30.7 8.5 69 695-769 17-86 (92)
17 PF09394 Inhibitor_I42: Chagas 51.2 1E+02 0.0022 29.5 9.2 70 897-977 1-75 (92)
18 PF07703 A2M_N_2: Alpha-2-macr 31.9 3.6E+02 0.0078 27.5 10.2 118 894-1028 5-127 (136)
19 KOG4289 Cadherin EGF LAG seven 31.1 1.9E+03 0.041 31.9 40.0 43 371-424 463-505 (2531)
20 PF02369 Big_1: Bacterial Ig-l 29.7 2.3E+02 0.005 27.9 7.9 71 899-976 19-89 (100)
21 smart00634 BID_1 Bacterial Ig- 28.4 2.5E+02 0.0054 27.1 7.8 65 903-976 18-83 (92)
22 PF06832 BiPBP_C: Penicillin-B 28.4 2.2E+02 0.0048 27.2 7.4 51 329-383 31-83 (89)
23 KOG4194 Membrane glycoprotein 27.5 9.7E+02 0.021 31.4 14.0 62 557-623 621-694 (873)
24 PRK10177 putative invasin; Pro 27.4 1.4E+02 0.003 37.3 6.8 36 966-1001 423-458 (465)
25 PF02369 Big_1: Bacterial Ig-l 27.2 2.8E+02 0.0061 27.3 8.0 72 693-769 20-92 (100)
26 PF05688 DUF824: Salmonella re 26.5 91 0.002 26.8 3.6 28 1321-1348 6-33 (47)
27 PF09134 Invasin_D3: Invasin, 26.0 2.5E+02 0.0055 28.0 7.1 78 903-994 21-98 (99)
28 KOG4221 Receptor mediating net 24.5 2.1E+03 0.046 30.8 17.1 140 877-1038 131-281 (1381)
29 KOG1446 Histone H3 (Lys4) meth 23.2 8.8E+02 0.019 29.0 11.9 61 118-179 129-189 (311)
30 PRK15315 outer membrane protei 22.3 3.3E+02 0.0072 38.9 9.4 121 1319-1444 216-345 (1865)
31 PF13584 BatD: Oxygen toleranc 20.7 1.8E+03 0.038 28.0 20.5 66 851-917 76-157 (484)
No 1
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-38 Score=366.22 Aligned_cols=664 Identities=22% Similarity=0.252 Sum_probs=481.8
Q ss_pred EEecCceEEEEEecCCcccccc-cceeEEE-EEeeCCcccccCceeeeeEecCCCcEEEEEeccccEEEEEEEEccccCC
Q 000455 559 YLVPRTHVDVLLVGGPEPWEED-VDFIETF-EIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGD 636 (1487)
Q Consensus 559 ~L~~GSs~~~~~~gGP~pw~~e-~~~~~~~-~~~~e~~~~~~~~~~~~~v~~~~~~~~~V~C~~lG~~~l~~~vgN~~~~ 636 (1487)
++..||+..+...|||++|..| -.++++. ...++. . .....-..|+..|+.+|..+. +.||....
T Consensus 2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~~t~~~~~~---------~--~~~~~~v~~~is~q~v~~~~~--~~~nl~~i 68 (679)
T KOG1833|consen 2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKTMTQVMSEG---------G--PQPQSIVHFSISNQTVAVVNR--RGGNLGKI 68 (679)
T ss_pred cccccCccceEEcCCCcccccchhHHHHHHHHHhhcc---------C--CccceEEEEeecchhhhhhhh--hccccccc
Confidence 3457999999999999999766 2333320 001111 0 011222379999999998877 88999999
Q ss_pred CCCCCeeEEEEEEEEEecCCeEEEEEccCcchhhhhccccccCCCCCceeeEeEEeeCCCeEEEEEEEEcCCCCeEeecC
Q 000455 637 DHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSS 716 (1487)
Q Consensus 637 ~np~Pa~~~~~~~v~C~~P~~l~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~v~v~D~~g~~f~n~S 716 (1487)
..|.|++.+++..++|..|..+.+...+|.+++..++......| +.+.|+....+.....-+.+..|.|.+
T Consensus 69 ~~~~~~h~~i~~~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~fSns~ 139 (679)
T KOG1833|consen 69 VGPAPVHGEIQTSNECTGPVIVFSQDEVQIEQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSFSNSN 139 (679)
T ss_pred cccceeehheeeeecccCceEEEEeccchhhHHHHHHHHhhccc---------eEEecCceEEEEEeecccCcceecCCC
Confidence 99999999999999999999999998888877777776544443 245788777776555445555555544
Q ss_pred CceEEEEecCCCcceEeecccCcccCCCcceEEEEEeeeeeeEEEEEEEeeeeeccCCCcccccccccccceeeeEEEEE
Q 000455 717 SLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQL 796 (1487)
Q Consensus 717 sL~i~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~~~~l~~~~~~~~~~~~~~l~~~iel~l 796 (1487)
-+. +-||+.+ +....+|+++...++..|.+..+ .+.+..... +
T Consensus 140 ~~~----------~~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~~~g~--~--------------------- 182 (679)
T KOG1833|consen 140 PLL----------TFHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTKAAGR--T--------------------- 182 (679)
T ss_pred chh----------eeecchh---hhhccccccchHHHhcccceeeE-EEeeecccc--c---------------------
Confidence 332 2245443 23346788888887888888777 554432110 0
Q ss_pred eeeeEEcCceeEEeeCCcceEEEEEccceeEEEEEECCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEeccCCCCc
Q 000455 797 VSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRA 876 (1487)
Q Consensus 797 v~~i~l~P~~~~i~~~p~~~~~l~i~gGSG~~~~sss~~~Va~v~~~~~g~~~~~~~v~p~~~G~~~v~v~D~cl~~~~~ 876 (1487)
...+++.| +| .....+...|||+.++..-.++..+.+... ..+.+-++.|++.|..+|++.|.|+.+ .+
T Consensus 183 s~~~tl~~-----~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~~-~s 251 (679)
T KOG1833|consen 183 SIKVTLHC-----MN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLVG-QS 251 (679)
T ss_pred eeEEEEEE-----ee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEecccccc-cc
Confidence 01111211 12 222237889999999999888877776432 456788999999999999999999999 79
Q ss_pred eEEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEeCCCCCCCCCCcccc
Q 000455 877 ASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSM 956 (1487)
Q Consensus 877 a~a~V~V~~i~~I~l~~p~~vevevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~ 956 (1487)
+.|.++|.|+++|+++.+.- +++|.++++.+..-+.+|.+|+.++.++||.+++.....+...+ +..
T Consensus 252 a~al~rvad~~~l~id~egl--v~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s~~-----------~sg 318 (679)
T KOG1833|consen 252 ADALVRVADIHSLAIDAEGL--VEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVISTK-----------VSG 318 (679)
T ss_pred cchheeccCccEeeeccccc--ccCCceEEEEEEeecccCCccccccccccccccccccCcccccc-----------ccc
Confidence 99999999999999997666 89999999999999999999999999999999965444555533 335
Q ss_pred ceEEEEEeEEEEEEEEEEEEccCCcEEEeecEEEEEeCCCeeecCeeEEecCCEEEEEEEeCCccccEEEEeecCceEEE
Q 000455 957 SSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIAT 1036 (1487)
Q Consensus 957 ~~~~v~g~~~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL~l~P~~l~Lv~Gs~~ql~~~GGP~p~~~v~fs~~n~~va~ 1036 (1487)
.+|+++|.++|.|+++++++..+|+...|.++++|+|.|++++|+.++|+||+++|+.++|||+|...+.|+..|..+|+
T Consensus 319 ~~~tl~A~~lGtttl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n~~A~ 398 (679)
T KOG1833|consen 319 LRYTLRANSLGTTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNNMIAS 398 (679)
T ss_pred ceeEEEeeccccEEEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceecccceee
Confidence 88999999999999999999888998888999999999999999999999999999999999999999999999999999
Q ss_pred EEccccEEEEEeeeeEEEEEEEEcCCceEEEEeeeeEEEEceeeEEEEeecceeeeCcEEeEEEEec-CC----ceeeec
Q 000455 1037 IHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-EG----DVFSFY 1111 (1487)
Q Consensus 1037 V~~~~G~Vt~~~~G~~~It~~~~~~~g~~v~~~~~~V~V~~~~~vrI~a~~~rl~~G~~~pv~~~g~-~g----~~fsf~ 1111 (1487)
++. +++++..++|+++|.++..-.+|. +++++..+.+..+-++.+.+....+.+|....+++++. .| .+|.|.
T Consensus 399 ie~-s~~l~~~apg~ttiy~~~ivG~ga-v~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi 476 (679)
T KOG1833|consen 399 IEP-SILLTSSAPGYTTIYGTVIVGDGA-VTEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFI 476 (679)
T ss_pred ccc-ccceEeeccCCcceeeEEEEecCe-eEEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccchhhhc
Confidence 999 999999999999999954332564 46788888888888888889998999988888887763 22 333322
Q ss_pred ceeE--EEEEEEcCcceeEEeecccccccccccccccccceeecccccccccceEEEEEEeeeeEEEEEEEEEEecCCCC
Q 000455 1112 ELCR--NYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDS 1189 (1487)
Q Consensus 1112 ~~~l--~f~W~~s~~~vl~~~~~~~~~~e~~~~~~~~s~~~~l~~~~~~~~~~f~~~v~~~~~G~t~I~v~v~~~~~s~~ 1189 (1487)
.... .-+|.
T Consensus 477 ~~vvpv~~~~~--------------------------------------------------------------------- 487 (679)
T KOG1833|consen 477 KAVVPVKSHRN--------------------------------------------------------------------- 487 (679)
T ss_pred cceeEEeeccC---------------------------------------------------------------------
Confidence 2221 11111
Q ss_pred cccceeeeeeEEEEEEeccccccccCceeecCCCCccccccCCcccccccccCCCceeeEEEEEeeccccccccCCCCcE
Q 000455 1190 YSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDI 1269 (1487)
Q Consensus 1190 ~~~~~~~s~~i~i~vve~L~l~l~~p~~~~l~P~~~~~~llP~~~~l~~~~~g~~~~~~~~y~~l~~~~~~~~~~~~~iv 1269 (1487)
. +++|.+++..+++|.|.+.++-+.+. --+| . +++. . . ...+.+
T Consensus 488 ---e-----------~p~Lnlsar~~~t~rl~tF~t~t~~~--------~e~g-----l---~v~~-~-~----~din~~ 531 (679)
T KOG1833|consen 488 ---E-----------VPLLNLSARKHFTGRLSTFTTETTIT--------VEDG-----L---SVVQ-P-E----MDINTV 531 (679)
T ss_pred ---c-----------CcccChhhhcccccccCcceecceeE--------Eecc-----c---eEEe-c-c----cCCccc
Confidence 0 03344444445555555443311110 0011 0 1212 1 0 112223
Q ss_pred EE--cC-CeeeecCccceEEEEEEeccCCceeeEEEEEEeeeeEEEEEcc-CCcceeeeecCcEEEEEEEEeccCCCccc
Q 000455 1270 SI--DG-DTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNR-YPLNVIHLAVGAECEIPISYYDALGTPFH 1345 (1487)
Q Consensus 1270 ~v--~~-g~i~t~~~~G~a~v~v~d~~~g~~~~~~~V~V~~v~~l~i~~~-~~~~~~~lpvG~~~~~~V~~~D~~G~~F~ 1345 (1487)
.+ |+ +..++....--+++.-+|...+ +.++++.+.+.+.|.... .|.+....++ ++.....++-.+-+|.
T Consensus 532 ~v~~dN~~l~ktt~~lqA~l~~~~d~tS~---ia~~~~~s~v~q~r~ks~~ip~h~~dsai---le~~~~~v~~l~vt~l 605 (679)
T KOG1833|consen 532 RVAPDNSQLKKTTAWLQASLSVESDFTSR---IAISADGSLVTQGREKSAAIPVHNVDSAI---LETVLIPVTVLRVTSL 605 (679)
T ss_pred eecCCCccceeEeecccceEEEeeccccc---eEeecchhhhhccccCCCCCcccccchhh---heeecceeeeeeeEee
Confidence 33 33 3334444445556666666544 778999999998887654 2555555555 6666677778888888
Q ss_pred cccceEEEEEEeeeeeEEEEEEEecCCceEEEEEceeeeEEEEEEEccCCCcceEEEEeeccEeecCCCeEEee
Q 000455 1346 EAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVG 1419 (1487)
Q Consensus 1346 ~~~~~~~l~~~~n~~dlv~i~~~~~~~n~~~v~a~~~G~t~l~v~d~~~~~~~dyi~v~V~~~i~P~~~~L~vG 1419 (1487)
+.+....++.+.++.+++-+. .......-|++..++|.++.++.+..+.+..+|+.+++.....|+..+.+.|
T Consensus 606 ~vhg~ta~~~~~ens~~~FLn-t~~~~pv~yv~~~arG~al~~~sns~n~rph~~vl~p~la~~~~Q~~~i~~~ 678 (679)
T KOG1833|consen 606 DVHGTTALKSAFENSPLIFLN-TGAADPVKYVPQEARGVALVSLSNSTNHRPHLLVLIPYLACCVVQHWLISIR 678 (679)
T ss_pred cccchhhhhhhhcCCceEEee-cccccceEEeeccccCceeeeeccCCCCCCcceEEeChhhcccccceEEecc
Confidence 887666678888889999988 4334556779999999999999999888999999999999999998877765
No 2
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.5e-25 Score=256.99 Aligned_cols=437 Identities=16% Similarity=0.171 Sum_probs=353.9
Q ss_pred CcEEEeecEEEEEeCCCeeecCeeEEecCCEEEEEEEeCCccccEEEEeecCceEEEEEccccEEEEEeeeeEEEEEEEE
Q 000455 980 GHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVF 1059 (1487)
Q Consensus 980 G~~i~S~~~~I~VfpPL~l~P~~l~Lv~Gs~~ql~~~GGP~p~~~v~fs~~n~~va~V~~~~G~Vt~~~~G~~~It~~~~ 1059 (1487)
|++..|.+.-+++++|+|..|++++|++- ++|.+-+|||+|+..+.|++++++++++.+ .|..++...|...+.+.++
T Consensus 2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~-~t~~~~~~~~~~~~~v~~~is~q~v~~~~~-~~~nl~~i~~~~~~h~~i~ 79 (679)
T KOG1833|consen 2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKT-MTQVMSEGGPQPQSIVHFSISNQTVAVVNR-RGGNLGKIVGPAPVHGEIQ 79 (679)
T ss_pred cccccCccceEEcCCCcccccchhHHHHH-HHHHhhccCCccceEEEEeecchhhhhhhh-hccccccccccceeehhee
Confidence 34455677889999999999999999987 889999999999999999999999999998 8888888888888888776
Q ss_pred cC---CceEEEEeeeeEEEEceeeEEEEeecceeeeCcEEeEEEEec--CCceeeeccee--EEEEEEEcCcceeEEeec
Q 000455 1060 GN---GDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP--EGDVFSFYELC--RNYNWTIEDEKILGFWLG 1132 (1487)
Q Consensus 1060 ~~---~g~~v~~~~~~V~V~~~~~vrI~a~~~rl~~G~~~pv~~~g~--~g~~fsf~~~~--l~f~W~~s~~~vl~~~~~ 1132 (1487)
-. .++++.+.++++.+..+..||+-+..+|+.+-.-||+|++++ .+.+|+|.|.. +.|+|..+ ++.+..+.
T Consensus 80 ~~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r~~van~~~~~va~v~~s~~~~~fSns~~~~~~~w~~~--~~t~~~~e 157 (679)
T KOG1833|consen 80 TSNECTGPVIVFSQDEVQIEQLRAVRILAAATRLIVANGMPVYVAGVTSTQTPFSFSNSNPLLTFHWSMS--DVTDLVPE 157 (679)
T ss_pred eeecccCceEEEEeccchhhHHHHHHHHhhccceEEecCceEEEEEeecccCcceecCCCchheeecchh--hhhccccc
Confidence 42 577777778887777999999999999988888899998887 46889999988 69999988 66676665
Q ss_pred ccccccccccccccccceeecccccccccceEEEEEEeeeeEEEEEEEEEEecCCCCcc--cceeeeeeEEEEEEecccc
Q 000455 1133 DQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYS--ESRIYSASISLSVVSDLPL 1210 (1487)
Q Consensus 1133 ~~~~~e~~~~~~~~s~~~~l~~~~~~~~~~f~~~v~~~~~G~t~I~v~v~~~~~s~~~~--~~~~~s~~i~i~vve~L~l 1210 (1487)
|+++. .+++ .+.+|+ .++++++|++++.+++.|...+.+++ ..-.+++++++...++..+
T Consensus 158 ---~~~~~---------~~~~-----~~~~~~-~v~~~~~g~~s~~~tl~~~~vs~~~~~~t~gs~~~e~~~l~t~~s~v 219 (679)
T KOG1833|consen 158 ---HSEVF---------LQLP-----GEHNFA-VVHTKAAGRTSIKVTLHCMNVSSGQFEGTGGSLSDEVQILMTTGSDV 219 (679)
T ss_pred ---cchHH---------Hhcc-----cceeeE-EEeeeccccceeEEEEEEeecccCccccccceeEEEEEeeecccccc
Confidence 65643 2333 456788 89999999999999999999888877 4457899999999999887
Q ss_pred ccccCceeecCCCCcccccc-CC---cccccccccCCCceeeEEEEEeeccccccccCCCCcEEEcC-Ceeeec-Cccce
Q 000455 1211 ALGIPVTWVLPPHYTSTSLL-PS---SSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDG-DTIKTT-SSNHL 1284 (1487)
Q Consensus 1211 ~l~~p~~~~l~P~~~~~~ll-P~---~~~l~~~~~g~~~~~~~~y~~l~~~~~~~~~~~~~iv~v~~-g~i~t~-~~~G~ 1284 (1487)
+.|...+..++ |. +.+++.++.|.. .++-..+. |- .+...+.+|. |.+..| +..++
T Consensus 220 ---------~~pl~q~~~vl~Pkn~Gq~kl~v~d~g~~---~~sa~al~-rv-----ad~~~l~id~eglv~~G~s~~vt 281 (679)
T KOG1833|consen 220 ---------GFPLIQAHDVLNPKNNGQVKLRVSDAGLV---GQSADALV-RV-----ADIHSLAIDAEGLVEIGASVEVT 281 (679)
T ss_pred ---------cchhhcHHHhcCCCCCceEEEEEeccccc---ccccchhe-ec-----cCccEeeecccccccCCceEEEE
Confidence 56666666777 64 688888888722 23333333 32 4556666655 777766 56666
Q ss_pred EEEEEEeccC-C-ceeeEEEEEEeeeeEEEEEccC----CcceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEee
Q 000455 1285 ACIQAKDRSS-G-RIEIASCVRVAEVAQIRISNRY----PLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETN 1358 (1487)
Q Consensus 1285 a~v~v~d~~~-g-~~~~~~~V~V~~v~~l~i~~~~----~~~~~~lpvG~~~~~~V~~~D~~G~~F~~~~~~~~l~~~~n 1358 (1487)
+..++++... + +|.-.+.++| |..++++.+++ .+.+.+.++| +.+|.+.++.+.|+.|+..--..+|....+
T Consensus 282 ll~~~~~g~~Feveq~~l~d~qv-d~~~lhV~s~~~sg~~~tl~A~~lG-tttl~vs~~~S~G~vls~~Th~vqlysp~~ 359 (679)
T KOG1833|consen 282 LLAQDETGASFEVEQRPLADAQV-DASNLHVISTKVSGLRYTLRANSLG-TTTLSVSSKSSSGRVLSSRTHTVQLYSPIF 359 (679)
T ss_pred EEeecccCCcccccccccccccc-ccccCcccccccccceeEEEeeccc-cEEEEEEEecccceEeeccceeEEEecccc
Confidence 6667777666 4 6666677777 88888877764 4578899999 999999999999999993322245777778
Q ss_pred e-eeEEEEEEEecCCceEE-EEEceeeeEEEEEEEccCCCcceEEEEeeccEeecCCC--eEEee-cEEEEEEeccCC-C
Q 000455 1359 Y-HDVVSINYTLNGSGKIY-LKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNP--VLHVG-GSLDFSVEGFSD-Q 1432 (1487)
Q Consensus 1359 ~-~dlv~i~~~~~~~n~~~-v~a~~~G~t~l~v~d~~~~~~~dyi~v~V~~~i~P~~~--~L~vG-~~~~fs~~~~~~-~ 1432 (1487)
+ ++++.+. +++++.++ ..|.+.+.++-.-|+++++.+.++.++-+.+++.|... +.++| +.+|++..+..+ +
T Consensus 360 l~p~~l~l~--PGsk~~l~~eGGp~p~~~ld~~~~~n~~A~ie~s~~l~~~apg~ttiy~~~ivG~gav~~qti~lsv~g 437 (679)
T KOG1833|consen 360 LQPKRLTLI--PGSKFQLEVEGGPQPTPPLDFSLNNNMIASIEPSILLTSSAPGYTTIYGTVIVGDGAVTEQTIVLSVAG 437 (679)
T ss_pred CCcceEEEe--cCCceEEEEccCCCCCCcccceecccceeecccccceEeeccCCcceeeEEEEecCeeEEEEEEeeecC
Confidence 8 8888888 76666666 88999999999999999999999999999999999965 46999 999999998666 7
Q ss_pred cceeEEeeCCcEEEE-eCceeEEEEEeee
Q 000455 1433 VSGHWFSDNESVVHV-HMPSGKAEAVGIG 1460 (1487)
Q Consensus 1433 ~~g~wsssn~~V~~V-d~~tG~a~A~~~G 1460 (1487)
.+|.|.++..+.+++ |..|+..+++.+|
T Consensus 438 lPgi~l~aas~~v~tgdrvtl~~v~~spg 466 (679)
T KOG1833|consen 438 LPGIILSAASRKVETGDRVTLRLVGVSPG 466 (679)
T ss_pred cCceeeecccceeecCceEEEEEEeecCC
Confidence 788999999999999 8889999999998
No 3
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=97.84 E-value=7.5e-05 Score=70.67 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=59.7
Q ss_pred CCCeeecCeeEEecCCEEEEEEEeCCc--c-ccEEEEeecCceEEE-EEccccE-EEEEeeeeEEEEEEEEcCCce
Q 000455 994 APPRIHPHDIFLVPGASYMLTLKGGPT--V-GVYVDYTSTDEEIAT-IHRSSGQ-LFAISPGNTTLIATVFGNGDV 1064 (1487)
Q Consensus 994 pPL~l~P~~l~Lv~Gs~~ql~~~GGP~--p-~~~v~fs~~n~~va~-V~~~~G~-Vt~~~~G~~~It~~~~~~~g~ 1064 (1487)
..++|.|.++.|..|...||.+.=-|. + ...+.|+++|++||+ |+. .|+ |++++.|+++|+++..+....
T Consensus 3 ~~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~~~~ 77 (81)
T smart00635 3 TSVTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDGSSA 77 (81)
T ss_pred cEEEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCCcce
Confidence 457899999999999999999972222 2 678999999999999 687 999 999999999999999876543
No 4
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.70 E-value=5.5e-05 Score=71.15 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=60.3
Q ss_pred eeceEEeCCcceEEeeccEEEEEEEEEEcCceeEecCCCCceEEEEeCCceEEEecCccEEEEEeeeeEEEEEEecc
Q 000455 84 AEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTR 160 (1487)
Q Consensus 84 ~e~i~L~P~~~vyl~~G~~i~y~v~~~~qg~~~~i~lP~~~y~w~~~n~~Va~vd~~~g~vtA~~~G~t~V~v~d~~ 160 (1487)
++.|.|.|. .+.|.+|.+.+|++...-++. .+..+.|+++|++||+||...|+++|++.|.+.|++...+
T Consensus 2 v~~I~i~~~-~~~l~~G~~~~l~~~~~~~~~------~~~~v~w~ssn~~iatV~~~~G~Vta~~~G~a~Itat~~~ 71 (79)
T PF02368_consen 2 VTSITITPT-SVTLKVGQTQQLTATVTPSDG------SNSKVTWSSSNPSIATVDGNTGKVTALKAGTATITATSGD 71 (79)
T ss_dssp TSSEEETTT-EEECETTCEETTEEEEEEEES------TTSCEEEEESSTTTEEEETTTEEEEESSSCEEEEEEEETT
T ss_pred CcEEEEECC-EEEEECCCEEEEEEEEEECCC------cEeEEEEEeCCCeEEEEECCCEEEEEEECeEEEEEEEECC
Confidence 467899975 899999999999888655543 2378999999999999994499999999999999999886
No 5
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=97.66 E-value=0.00023 Score=67.36 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=59.6
Q ss_pred eeceEEeCCcceEEeeccEEEEEEEEEEcCceeEecCCCCceEEEEeCCceEE-EecCccE-EEEEeeeeEEEEEEeccc
Q 000455 84 AEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQ-VDNMMGL-TQALRLGQTAVIVEDTRV 161 (1487)
Q Consensus 84 ~e~i~L~P~~~vyl~~G~~i~y~v~~~~qg~~~~i~lP~~~y~w~~~n~~Va~-vd~~~g~-vtA~~~G~t~V~v~d~~~ 161 (1487)
+.+|.|.|+ ...|.+|...++++. +..+... - +..+.|+++|++||+ ++. .|+ ++|++.|.+.|+++..+.
T Consensus 2 ~~~i~i~p~-~~~l~~G~~~~l~a~-~~~~~~~---~-~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~ 74 (81)
T smart00635 2 VTSVTVTPT-TASVKKGLTLQLTAT-VTPSSAK---V-TGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDG 74 (81)
T ss_pred ccEEEEeCC-eeEEeCCCeEEEEEE-EECCCCC---c-cceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCC
Confidence 567999974 889999999999998 4544321 1 788999999999999 576 899 999999999999998765
No 6
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.62 E-value=6e-05 Score=70.88 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=59.1
Q ss_pred CeeecCeeEEecCCEEEEEEEeCCccc--cEEEEeecCceEEEEE-ccccEEEEEeeeeEEEEEEEEc
Q 000455 996 PRIHPHDIFLVPGASYMLTLKGGPTVG--VYVDYTSTDEEIATIH-RSSGQLFAISPGNTTLIATVFG 1060 (1487)
Q Consensus 996 L~l~P~~l~Lv~Gs~~ql~~~GGP~p~--~~v~fs~~n~~va~V~-~~~G~Vt~~~~G~~~It~~~~~ 1060 (1487)
+.+.|..+.|..|.+.|+...+-|... ..+.|+++|++||+|+ . .|+|++++.|+++|+++..+
T Consensus 5 I~i~~~~~~l~~G~~~~l~~~~~~~~~~~~~v~w~ssn~~iatV~~~-~G~Vta~~~G~a~Itat~~~ 71 (79)
T PF02368_consen 5 ITITPTSVTLKVGQTQQLTATVTPSDGSNSKVTWSSSNPSIATVDGN-TGKVTALKAGTATITATSGD 71 (79)
T ss_dssp EEETTTEEECETTCEETTEEEEEEEESTTSCEEEEESSTTTEEEETT-TEEEEESSSCEEEEEEEETT
T ss_pred EEEECCEEEEECCCEEEEEEEEEECCCcEeEEEEEeCCCeEEEEECC-CEEEEEEECeEEEEEEEECC
Confidence 568899999999999999999988764 5799999999999999 7 99999999999999999977
No 7
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.60 E-value=1.2 Score=64.86 Aligned_cols=727 Identities=13% Similarity=0.121 Sum_probs=352.0
Q ss_pred eceEEeCCcceEEeeccEEEEEEEEEEcCceeEecCCCCceEEEEeCCceEEEec--CccEEEEEeeeeEEEEEEecccC
Q 000455 85 EAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDN--MMGLTQALRLGQTAVIVEDTRVA 162 (1487)
Q Consensus 85 e~i~L~P~~~vyl~~G~~i~y~v~~~~qg~~~~i~lP~~~y~w~~~n~~Va~vd~--~~g~vtA~~~G~t~V~v~d~~~~ 162 (1487)
.++.+.| ..-++..|..++|..... .|. .-.|.|.--|........ .+=.-+=.+.|.=.|+|+-.|-.
T Consensus 1342 ~~vt~t~-s~~~v~lG~tV~Ftatss-~g~-------~~sw~WDFGDG~ts~t~st~qNptHTY~~pGtYTVTLTVtN~~ 1412 (2740)
T TIGR00864 1342 GKISLQA-EKQFFALGDEAQFQACAE-PEF-------NYRYEWDFGGEEAAPLPAAGAEVTFIYNDPGCYLVTVAASNNI 1412 (2740)
T ss_pred cceEecc-cccccccCCeEEEEEecC-CCC-------cEEEEEEeCCCCccccccCCCcceEEcCCCceEEEEEEEECCC
Confidence 4555664 345577899999987641 221 346999998875433211 12233444678778888877653
Q ss_pred C-CcceEEEEEecCCe-EEEEEEeCccCCCCCCCccccCCCCe-EEEEeCcEEEEEEEEEcCCCCcceEEeecCCcEEEe
Q 000455 163 G-HTQVSSLNVVLPDT-LWLYISPLSISGDPVEGTKAIPSVAR-WFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLS 239 (1487)
Q Consensus 163 ~-~~~~~tI~Vv~P~~-L~i~v~P~~~~~~~~~~~~~~~~~~~-w~l~~G~~y~i~v~l~d~~~~~~~i~~~~~~~i~i~ 239 (1487)
+ ...+.+|+|..|.. ..|..- +.. ..+..|..+.+. |.+ ++..+...
T Consensus 1413 gs~T~s~~I~V~~Pv~~~~ft~n-----------------gT~g~~ltlg~pv~Ft----d~S---------tGt~~Sy~ 1462 (2740)
T TIGR00864 1413 SAANDSALIEVLEPVGATSFKHN-----------------GSHGNNLELGQPYLFS----AFG---------RARNASYL 1462 (2740)
T ss_pred cceeeeeEEEEecCCCcceeeec-----------------CCcccccccCcceEEe----ecC---------CCCceEEE
Confidence 3 23456788887742 222221 111 124555544332 221 12245555
Q ss_pred eCCcceEEEeeccCccceeeEEEecEEEEEeeeeeEEEEEEEEEeeccccceEEEEEEEEEEEEeeEEE-eeccCCCCcc
Q 000455 240 DNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKF-SLDQTNGVSE 318 (1487)
Q Consensus 240 ~~~~~~~~v~~~~~~~n~~~~~~n~~~v~a~~~G~~tI~Asl~~~~~~~~~~~~l~~~qev~i~~~i~i-~~~~~~~~p~ 318 (1487)
|++.+= ... +..|-+ | +-.++|+=+|+-+...-.|.+ +....|.|..|+.- .+ +++
T Consensus 1463 WdFGDG-sts---t~qnpt------H--tY~~~GtYtVtLTvtN~~Gss------t~T~~VtV~~pV~~~ti-----nas 1519 (2740)
T TIGR00864 1463 WDFGDG-GLL---EGPEIL------H--AFNSPGDFNIRLAAANEVGKN------EATLNVAVKARVRGLTI-----NAS 1519 (2740)
T ss_pred EECCCC-Ccc---CccceE------E--EcCCCceEEEEEEEECCCCce------EEEEEEEEeccccceEE-----cCC
Confidence 554110 000 112222 2 233677766655544333221 11234555444321 00 222
Q ss_pred eeEeeCccCceeEEEEEEe--ccCCCCCccEEEeeCCceeEEEecCc-EEEecccceEEEEEEeccCCc--ceeeEEEEE
Q 000455 319 SILLPWAPGIYQEVELMAT--GGCAKTSSDYKWFSSDMATVSITASG-VVQAKKPGKATVKVVSIFDSF--NYDEIVIEV 393 (1487)
Q Consensus 319 ~i~lp~~~~~~q~~~L~a~--gGsg~~~~~y~WsSsn~~VatV~~~G-vvta~~~G~~~V~a~d~~n~~--~~~~~~V~V 393 (1487)
....|. . . .+++.+. .|+. ..|.|.-.|.........= .-+-..+|+-+|+..-. |.. ...++.|+|
T Consensus 1520 ~~~vpl--~-~-sV~Fta~~s~Gs~---v~ysWdFGDg~ts~~~npt~~yTY~spGtYtVtLTvt-N~~Gs~~~T~~i~V 1591 (2740)
T TIGR00864 1520 LTNVPL--N-G-SVHFEAHLDAGDD---VRFSWILCDHCTPIFGGNTIFYTFRSVGTFNIIVTAE-NDVGAAQASIFLFV 1591 (2740)
T ss_pred Cccccc--c-c-eEEEEEEccCCCc---eeEEEEeCCCCccccCCCceEEeecCCceEEEEEEEe-cCCCccceeEEEEE
Confidence 222222 1 1 2566653 5655 3899998775443321111 12335789888876643 332 234456676
Q ss_pred ec-ceeeEEeecCcEE-------------EEeCCEEEEEEEEEecCCceecccCCCccEEEEe-eCC-----ccEEEecc
Q 000455 394 ST-PSSMVMLRNFPVE-------------TVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWK-AGS-----ESFIVLNA 453 (1487)
Q Consensus 394 ~~-p~~i~i~p~~~~E-------------~~vg~~l~l~v~~~~~~g~~Fs~c~~~~~~v~ws-~d~-----~if~~~~~ 453 (1487)
.. +..+.|+.+ ..+ +.-|..+.|...+ ++| + +....|. .+. ..+.
T Consensus 1592 ~~~I~GlqI~~~-~~~gg~~~~~~~~~~~~~t~~~v~l~~~~--~~G------T--nvsysW~~~~~n~~dg~~~~---- 1656 (2740)
T TIGR00864 1592 LQEIEGLQILGE-TAEGGGGGVQELDGCYFETNHTVQFHAGF--KDG------T--NLSFSWNAILDNEPDGPAFA---- 1656 (2740)
T ss_pred eecccceEEEee-cccccCCcccccccceeccCCEEEeeecc--CCC------C--eeEEEEEEecCCCCCCcccc----
Confidence 54 446667652 111 0112233333222 223 2 3347776 111 0110
Q ss_pred CCCCccccccCCccccccCCCCCCceEEEEEeeeeeEEEEEEEeecccccccccCcceEEEEEEEEeecCCceeeccCCC
Q 000455 454 TKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDG 533 (1487)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~g~~C~~~~v~a~~~G~t~l~vs~~~~~~~~~~~~~g~~~l~asi~iaaY~pL~~~~p~~~ 533 (1487)
.-| -...+...++|.-+|++.....+ |. ..++-++-+.+|..-+..
T Consensus 1657 ------------------~tG---k~~~vt~~~pG~Y~VtL~aSN~v--------G~--~t~s~~i~v~epi~~L~L--- 1702 (2740)
T TIGR00864 1657 ------------------GSG---KGAKLNPLEAGPCDIFLQAANLL--------GQ--ATADCTIDFLEPAGNLML--- 1702 (2740)
T ss_pred ------------------ccC---ceeEEecCCCceEEEEEEEeecc--------cc--eeeEEEEEEEEEcCceEE---
Confidence 112 12346667788888888876621 33 344445555566544421
Q ss_pred CCCCCceeccCcCcccccccccceEEEecCceEEEEE--ecCCcccccccceeEEEEEeeCCcccccCceeeeeEecCCC
Q 000455 534 SGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLL--VGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSK 611 (1487)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~p~~ev~L~~GSs~~~~~--~gGP~pw~~e~~~~~~~~~~~e~~~~~~~~~~~~~v~~~~~ 611 (1487)
..+ .-...+|.++++.+ .+|..-+... .+-+......++ .+-.
T Consensus 1703 -------------------~aS-~~~aavn~~V~fs~~lt~GS~vty~W-------~~gdG~s~~~s~--------p~~t 1747 (2740)
T TIGR00864 1703 -------------------QAS-DNPAAVNALINLSAELAEGSGLQYRW-------FLEEGDDLETSE--------PFMS 1747 (2740)
T ss_pred -------------------ecc-CCcccCCCeEEEEEEecCCCCcEEEE-------EECCCCCcccCC--------CceE
Confidence 001 11223455444333 3444321110 110000000000 0112
Q ss_pred cEEEEEeccccEEEEEEEEccccCCCCCCCeeEEEEEEEEEecCCeEEEEEccCcchhhhhccccccCCCCCceeeEeEE
Q 000455 612 NLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVT 691 (1487)
Q Consensus 612 ~~~~V~C~~lG~~~l~~~vgN~~~~~np~Pa~~~~~~~v~C~~P~~l~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~ 691 (1487)
|.|. ..|.+.+++.+.|..+..+ .++.|. |++|+.-+ .++. .|+.. ...
T Consensus 1748 Htf~----~~G~y~VtVta~N~vss~~-------~s~~V~----------VqepV~GL-~i~~--~~~~~---~~~---- 1796 (2740)
T TIGR00864 1748 HSFP----SAGLHLVTMKAFNELGSAN-------ASEEVD----------VQEPISGL-KIRA--ADAGE---QNF---- 1796 (2740)
T ss_pred EEcc----CCceEEEEEEEEccccccc-------eeEEEE----------EEeccccc-eEec--CCCCc---ccc----
Confidence 3343 4688899999999886332 233333 33344211 0111 11110 001
Q ss_pred eeCCCeEEEEEEEEcCCCCeEeecCCceEEEEecCCCcceEeecccCcccCCCcceEEEEEeeeeeeEEEEEEEeeeeec
Q 000455 692 VANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDA 771 (1487)
Q Consensus 692 l~~~~~~~l~v~v~D~~g~~f~n~SsL~i~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~~~ 771 (1487)
+..+....+..+ .+.| ++....|.+...... .+++ ...-..+.|...|+.++.--
T Consensus 1797 ~~ag~~v~F~a~--vstG------snVsw~W~f~~g~s~-------------~gk~-v~~Tf~~aG~ytV~L~AsN~--- 1851 (2740)
T TIGR00864 1797 FAADSSVCFQGE--LATG------TNVSWCWAIDGGSSK-------------MGKH-ACMTFPDAGTFAIRLNASNA--- 1851 (2740)
T ss_pred eecCcEEEEEEE--ccCC------CeeEEEEEeCCCCcc-------------ccce-eEEecCCCeEEEEEEEEEcc---
Confidence 123444444443 4567 445889988642100 1111 22222678888887777521
Q ss_pred cCCCcccccccccccceeeeEEEEE-eeeeEEcCceeEEeeCCcceEEEEEcccee-EEEEEECCcceEEEEeccCccee
Q 000455 772 KDGHHSAQLLEISESFLTDAVRLQL-VSTLRVNPEYNLLFFNPDAKANLSIAGGSC-FLEAAVNDSQVVEVIQAPEGLRC 849 (1487)
Q Consensus 772 ~l~~~~~~~~~~~~~~l~~~iel~l-v~~i~l~P~~~~i~~~p~~~~~l~i~gGSG-~~~~sss~~~Va~v~~~~~g~~~ 849 (1487)
++. ..++..++++= +..+.|..+....+.+..+...+.+..||. .|.|.-.+..-... ++..
T Consensus 1852 -vs~----------~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~--t~~~--- 1915 (2740)
T TIGR00864 1852 -VSG----------KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL--QPGP--- 1915 (2740)
T ss_pred -cCc----------ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee--cCCC---
Confidence 111 12233333322 124455555445555556666777789998 89999887442222 1221
Q ss_pred eeEEEeeccceEEEEEEEEeccCCCCceEEEEEEeee-eEEEEEecceEEEecCcEEEEEEEEEecCCCEEecCCceeee
Q 000455 850 LQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADV-DWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMD 928 (1487)
Q Consensus 850 ~~~~v~p~~~G~~~v~v~D~cl~~~~~a~a~V~V~~i-~~I~l~~p~~vevevG~tv~~~v~v~d~~g~~f~~~~~~~m~ 928 (1487)
++.=+=.++|...|.+.-..+-+.+.+...|.|.+. ..+.|...+..-+..|+.....+++ ..|.+.. +.-+|+
T Consensus 1916 -t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v--~~g~~V~--f~W~f~ 1990 (2740)
T TIGR00864 1916 -RFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANV--QRGKPVA--FAWTFD 1990 (2740)
T ss_pred -eEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEE--ecCCceE--EEEEee
Confidence 244444678999999987666664444444444333 4444443322126788888888888 5666655 333344
Q ss_pred EEEEeecceEEEEeCCCCCCCCCCccccceEEEEEeEEEEEEEEEEEEccCCcEEEeecEEEEEeCCCe---ee--cCee
Q 000455 929 IRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPR---IH--PHDI 1003 (1487)
Q Consensus 929 l~l~~~~~i~~l~~~~~~s~~~~~~~~~~~~~v~g~~~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL~---l~--P~~l 1003 (1487)
|+..-.+..+-. -+....-++...|.-++++.+.+.-|.. +.+..|+|-.|++ |. |...
T Consensus 1991 ~~~~~g~~~~~~--------------~G~~vty~~~~~G~~~I~v~A~N~l~s~--n~t~~i~VQ~~i~~~~L~~~p~~~ 2054 (2740)
T TIGR00864 1991 LHHLHGDSLVIH--------------MGKDVSYTAEAAGLLEIQLGAFNALGAE--NITLQLEAQDALMDAALQAGPQDC 2054 (2740)
T ss_pred ecccCCCcceee--------------cCCceEEccCCCcEEEEEEEEEcccCcc--cccEEEEEEeheeeEEEeecCcce
Confidence 442211111111 1223445556789999999988654542 4667888888874 33 4333
Q ss_pred EEecCCEEEEEEEeCCcc-ccEEEEeecCceEEEEEccccEE--EEEeeeeEEEEEEEEcC
Q 000455 1004 FLVPGASYMLTLKGGPTV-GVYVDYTSTDEEIATIHRSSGQL--FAISPGNTTLIATVFGN 1061 (1487)
Q Consensus 1004 ~Lv~Gs~~ql~~~GGP~p-~~~v~fs~~n~~va~V~~~~G~V--t~~~~G~~~It~~~~~~ 1061 (1487)
.+ +.+.++.+.=.|.+ +....|.-.|........ .-.+ +=...|+..|++.+.|+
T Consensus 2055 ~~--n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~-~~~~sHtY~r~G~Y~V~V~a~N~ 2112 (2740)
T TIGR00864 2055 FT--NKMAQFEAATSPKPNFMACHWDFGDGSAGQDTD-EPRAEHEYLHPGDYRVQVNASNL 2112 (2740)
T ss_pred ec--CceEEEEEEEccCCCcEEEEEEecCCCCccccC-CceeEEEecCCccEEEEEEEEcc
Confidence 32 44544444434433 456677666666544422 2222 23556999999999775
No 8
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.42 E-value=26 Score=51.94 Aligned_cols=436 Identities=14% Similarity=0.113 Sum_probs=232.8
Q ss_pred eeEEcCceeEEeeCCcceEEEEEcccee-EEEEEECCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEeccCCCCce
Q 000455 799 TLRVNPEYNLLFFNPDAKANLSIAGGSC-FLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAA 877 (1487)
Q Consensus 799 ~i~l~P~~~~i~~~p~~~~~l~i~gGSG-~~~~sss~~~Va~v~~~~~g~~~~~~~v~p~~~G~~~v~v~D~cl~~~~~a 877 (1487)
.+.+.++...++....+..+-...+|+. .|.|.-.|...... ++ ....=+=..+|..+|+++-..-.+....
T Consensus 1513 ~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~----~n---pt~~yTY~spGtYtVtLTvtN~~Gs~~~ 1585 (2740)
T TIGR00864 1513 GLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIF----GG---NTIFYTFRSVGTFNIIVTAENDVGAAQA 1585 (2740)
T ss_pred ceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCcccc----CC---CceEEeecCCceEEEEEEEecCCCccce
Confidence 4556666555555544554444567877 89999887533221 11 0012222568988888885544443445
Q ss_pred EEEEEEeee-eEEEEEec------------ceEEEecCcEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEeCC
Q 000455 878 SALVQVADV-DWIKIMSG------------EEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDD 944 (1487)
Q Consensus 878 ~a~V~V~~i-~~I~l~~p------------~~vevevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~ 944 (1487)
+..|.|.++ ..+.|... +..-+.-|.++.+...+ .+...+.+.|.+-. +
T Consensus 1586 T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~----------~~GTnvsysW~~~~--------~ 1647 (2740)
T TIGR00864 1586 SIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGF----------KDGTNLSFSWNAIL--------D 1647 (2740)
T ss_pred eEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeecc----------CCCCeeEEEEEEec--------C
Confidence 566666643 33333311 00113334444443332 22344555555410 0
Q ss_pred CCCCCCCC--ccccceEEEEEeEEEEEEEEEEEEccCCcEEEeecEEEEEeCCCe---eecCeeEEecCCEEEEEE--Ee
Q 000455 945 ATSSPDGG--YFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPR---IHPHDIFLVPGASYMLTL--KG 1017 (1487)
Q Consensus 945 ~~s~~~~~--~~~~~~~~v~g~~~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL~---l~P~~l~Lv~Gs~~ql~~--~G 1017 (1487)
..+.+. ..-+..+.++-.+.|.-++++++...-|+. ++..+|.|-.|+. |....--..+|+.+.+.+ .+
T Consensus 1648 --n~~dg~~~~~tGk~~~vt~~~pG~Y~VtL~aSN~vG~~--t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~ 1723 (2740)
T TIGR00864 1648 --NEPDGPAFAGSGKGAKLNPLEAGPCDIFLQAANLLGQA--TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAE 1723 (2740)
T ss_pred --CCCCCccccccCceeEEecCCCceEEEEEEEeecccce--eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecC
Confidence 000010 012456888889999999999998777765 4566777777764 333332234677654444 67
Q ss_pred CCccccEEEEeecCceEEEEEccccEE-EEEeeeeEEEEEEEEcCCceEEEEeeeeEEEEce-eeEEEEeecc----eee
Q 000455 1018 GPTVGVYVDYTSTDEEIATIHRSSGQL-FAISPGNTTLIATVFGNGDVVICQAFSSVKVGVP-SSVTLNAQSD----QLA 1091 (1487)
Q Consensus 1018 GP~p~~~v~fs~~n~~va~V~~~~G~V-t~~~~G~~~It~~~~~~~g~~v~~~~~~V~V~~~-~~vrI~a~~~----rl~ 1091 (1487)
|. +....|+..+..--.... .-.. +=-+.|...|+.++.+.-|... .+..|+|..+ .++.|.+... -+.
T Consensus 1724 GS--~vty~W~~gdG~s~~~s~-p~~tHtf~~~G~y~VtVta~N~vss~~--~s~~V~VqepV~GL~i~~~~~~~~~~~~ 1798 (2740)
T TIGR00864 1724 GS--GLQYRWFLEEGDDLETSE-PFMSHSFPSAGLHLVTMKAFNELGSAN--ASEEVDVQEPISGLKIRAADAGEQNFFA 1798 (2740)
T ss_pred CC--CcEEEEEECCCCCcccCC-CceEEEccCCceEEEEEEEEccccccc--eeEEEEEEeccccceEecCCCCccccee
Confidence 75 566777766643221111 1111 2345899999999988655432 3455555443 5666654443 244
Q ss_pred eCcEEeEEEEecCCceeeecceeEEEEEEEcCcceeEEeecccccccccccccccccceeecccccccccceEEEEEEee
Q 000455 1092 VGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRS 1171 (1487)
Q Consensus 1092 ~G~~~pv~~~g~~g~~fsf~~~~l~f~W~~s~~~vl~~~~~~~~~~e~~~~~~~~s~~~~l~~~~~~~~~~f~~~v~~~~ 1171 (1487)
+|...++....-+|++ ..|.|...+..-. ....+..+-..
T Consensus 1799 ag~~v~F~a~vstGsn-------Vsw~W~f~~g~s~---------------------------------~gk~v~~Tf~~ 1838 (2740)
T TIGR00864 1799 ADSSVCFQGELATGTN-------VSWCWAIDGGSSK---------------------------------MGKHACMTFPD 1838 (2740)
T ss_pred cCcEEEEEEEccCCCe-------eEEEEEeCCCCcc---------------------------------ccceeEEecCC
Confidence 5666555544345555 5789988633210 01112335578
Q ss_pred eeEEEEEEEEEEecCCCCcccceeeeeeEEEEEEecc-ccccccCceeecCCCCccccccCC-ccccccc-ccCCCceee
Q 000455 1172 AGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDL-PLALGIPVTWVLPPHYTSTSLLPS-SSESHGQ-WDSQSHKGS 1248 (1487)
Q Consensus 1172 ~G~t~I~v~v~~~~~s~~~~~~~~~s~~i~i~vve~L-~l~l~~p~~~~l~P~~~~~~llP~-~~~l~~~-~~g~~~~~~ 1248 (1487)
+|.-+|++++...-. . .+++-++.|-+.+ .| .|.++.. ...|| +..++.. -.| ..
T Consensus 1839 aG~ytV~L~AsN~vs--~------~~~s~~~~VQe~I~~L--------~L~as~~--~~~~n~~v~fsa~l~~G----S~ 1896 (2740)
T TIGR00864 1839 AGTFAIRLNASNAVS--G------KSASREFFAEEPIFGL--------ELKASKK--IAAIGEKVEFQILLAAG----SA 1896 (2740)
T ss_pred CeEEEEEEEEEcccC--c------ceeeeeEEEEEecceE--------EEecccc--cccCCCEEEEEEEecCC----Cc
Confidence 999999999985421 1 1234445555554 22 1222211 22266 4444332 223 23
Q ss_pred EEEEEeeccccccccCCCCcEEEcC-Cee-eecCccceEEEEEEeccC-CceeeEEEEE-EeeeeEEEEEccCCcceeee
Q 000455 1249 IVYSLLKFCSEKNEAASKDDISIDG-DTI-KTTSSNHLACIQAKDRSS-GRIEIASCVR-VAEVAQIRISNRYPLNVIHL 1324 (1487)
Q Consensus 1249 ~~y~~l~~~~~~~~~~~~~iv~v~~-g~i-~t~~~~G~a~v~v~d~~~-g~~~~~~~V~-V~~v~~l~i~~~~~~~~~~l 1324 (1487)
++|..-=|. ....+ .++ ..+ -+...+|.-.|.|+.... +...+...|. ..+|.-|+|...+ -..+
T Consensus 1897 Vtf~w~fGd-------gs~~~-~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c---~~~~ 1965 (2740)
T TIGR00864 1897 VNFRLQIGG-------AAPEV-LQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCC---AAGI 1965 (2740)
T ss_pred eEEEEEeCC-------CCcee-ecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCc---ccce
Confidence 555442211 22222 123 223 446778888888888777 4333333333 3446678887643 1248
Q ss_pred ecCcEEEEEEEEeccCCCc
Q 000455 1325 AVGAECEIPISYYDALGTP 1343 (1487)
Q Consensus 1325 pvG~~~~~~V~~~D~~G~~ 1343 (1487)
+.|...+|..++ ..|.+
T Consensus 1966 ~~g~~~tF~A~v--~~g~~ 1982 (2740)
T TIGR00864 1966 ATGEEKNFTANV--QRGKP 1982 (2740)
T ss_pred ecCceEEEEEEE--ecCCc
Confidence 999999999998 55665
No 9
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=93.04 E-value=5.8 Score=47.76 Aligned_cols=141 Identities=21% Similarity=0.152 Sum_probs=95.9
Q ss_pred eeeeEEEEEecceEEEecCcEEEEEEEEEe--cCCCEEecCCceeeeEEEEeecc-eEEEEeCCCCCCCCCCccccceEE
Q 000455 884 ADVDWIKIMSGEEISLMEGRSQSIDLMAGI--DDGSTFDSFQYTYMDIRVHIEDH-IVELIDDDATSSPDGGYFSMSSFK 960 (1487)
Q Consensus 884 ~~i~~I~l~~p~~vevevG~tv~~~v~v~d--~~g~~f~~~~~~~m~l~l~~~~~-i~~l~~~~~~s~~~~~~~~~~~~~ 960 (1487)
..+..+.+. +.--++.+|++.++...+.. ..++.+ .+...+. +.++ ......
T Consensus 179 ~~~~gvtl~-k~s~~l~vG~t~tlta~v~P~~at~K~v----------~wtSsd~s~atv--------------~~~~g~ 233 (329)
T COG5492 179 VPVTGITVN-KTSDTLKVGDTDTLTATVTPDNATDKTV----------TWTSSDPSKATV--------------DDNTGK 233 (329)
T ss_pred eeeeeeeec-CCccceEeeeeEEEEEEEcCCCCCCCce----------eEecCCCceeEe--------------cCCceE
Confidence 444667777 44446999999999999874 222222 2322222 2221 124689
Q ss_pred EEEeEEEEEEEEEEEEccCCcEEEeecEEEEEeCCCeeecCeeEEecCCEEEEEEEeCCcc--ccEEEEeecCceEEEEE
Q 000455 961 IMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTV--GVYVDYTSTDEEIATIH 1038 (1487)
Q Consensus 961 v~g~~~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL~l~P~~l~Lv~Gs~~ql~~~GGP~p--~~~v~fs~~n~~va~V~ 1038 (1487)
|+|++.|...++++.. .|.. ++...|.|=..-- +.++...++.-.|=|.+ +..+.|.+++..++.++
T Consensus 234 Itav~~Gs~~It~tt~--dGs~--~a~~~VtV~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~~~t~~~~~~~~~~ 302 (329)
T COG5492 234 ITAVAAGTANITATTN--DGSK--TATCKVTVNKATD-------LTVSYNAHVTNTGWQTDASDKVVAGTSSNSNIAEVD 302 (329)
T ss_pred EEEEecCCceEEEEec--cccc--ceeEEEEeccccc-------cceeeeeeeeeeecccccccceEEeeecCCceeEee
Confidence 9999999999999986 4433 3344444432111 44444446666665444 89999999999999999
Q ss_pred ccccEEEEEeeeeEEEEEEEEcC
Q 000455 1039 RSSGQLFAISPGNTTLIATVFGN 1061 (1487)
Q Consensus 1039 ~~~G~Vt~~~~G~~~It~~~~~~ 1061 (1487)
. .|++.+.+.|+.++++...+.
T Consensus 303 ~-~~~~~~~~~~~~t~~a~~~n~ 324 (329)
T COG5492 303 A-IGLINAPSGGKITYTATTDNV 324 (329)
T ss_pred c-ceeEecCCCCceEEEEEEeec
Confidence 8 999999999999999988764
No 10
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=92.31 E-value=13 Score=44.69 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=83.9
Q ss_pred CeEEEEeCcEEEEEEEEEcCCCCcceEEeecCCcEEEeeCCcceEEEeeccCccceeeEEEecEEEEEeeeeeEEEEEEE
Q 000455 202 ARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASL 281 (1487)
Q Consensus 202 ~~w~l~~G~~y~i~v~l~d~~~~~~~i~~~~~~~i~i~~~~~~~~~v~~~~~~~n~~~~~~n~~~v~a~~~G~~tI~Asl 281 (1487)
..-.|.+|+++++.+.+...+.. +..+.++.+...+-.+ .+. .+.++|+++|++.|+|+.
T Consensus 189 ~s~~l~vG~t~tlta~v~P~~at--------~K~v~wtSsd~s~atv----~~~--------~g~Itav~~Gs~~It~tt 248 (329)
T COG5492 189 TSDTLKVGDTDTLTATVTPDNAT--------DKTVTWTSSDPSKATV----DDN--------TGKITAVAAGTANITATT 248 (329)
T ss_pred CccceEeeeeEEEEEEEcCCCCC--------CCceeEecCCCceeEe----cCC--------ceEEEEEecCCceEEEEe
Confidence 35788999999999999985522 2333333332222111 111 356899999999999987
Q ss_pred EEeeccccceEEEEEEEEEEEEeeEEEeeccCCCCcceeEeeCccCceeEEEEEEeccCCC-CCccEEEeeCCceeEEEe
Q 000455 282 TYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAK-TSSDYKWFSSDMATVSIT 360 (1487)
Q Consensus 282 ~~~~~~~~~~~~l~~~qev~i~~~i~i~~~~~~~~p~~i~lp~~~~~~q~~~L~a~gGsg~-~~~~y~WsSsn~~VatV~ 360 (1487)
.+.. ..+.+.|.+-..-.+ . -.+. .++++.+=... .-....|.++++.+++++
T Consensus 249 ~dGs--------~~a~~~VtV~~~~~~-------~----------~~~~-~~~~~~~~~~~~~d~~~~~t~~~~~~~~~~ 302 (329)
T COG5492 249 NDGS--------KTATCKVTVNKATDL-------T----------VSYN-AHVTNTGWQTDASDKVVAGTSSNSNIAEVD 302 (329)
T ss_pred cccc--------cceeEEEEecccccc-------c----------eeee-eeeeeeecccccccceEEeeecCCceeEee
Confidence 6553 233334333211001 0 0122 24555442221 123889999999999999
Q ss_pred cCcEEEecccceEEEEEEec
Q 000455 361 ASGVVQAKKPGKATVKVVSI 380 (1487)
Q Consensus 361 ~~Gvvta~~~G~~~V~a~d~ 380 (1487)
..|++.+.+.|..+++|+..
T Consensus 303 ~~~~~~~~~~~~~t~~a~~~ 322 (329)
T COG5492 303 AIGLINAPSGGKITYTATTD 322 (329)
T ss_pred cceeEecCCCCceEEEEEEe
Confidence 99999999999999999864
No 11
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=85.35 E-value=6.2 Score=36.56 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=41.9
Q ss_pred EEcCceeEecCCCCceEEEEeCCceEEEec---CccEEEEEeeeeEEEEEEeccc
Q 000455 110 IRGNIPQVVALPSPHHRWSVSNSSVAQVDN---MMGLTQALRLGQTAVIVEDTRV 161 (1487)
Q Consensus 110 ~~qg~~~~i~lP~~~y~w~~~n~~Va~vd~---~~g~vtA~~~G~t~V~v~d~~~ 161 (1487)
+..|+-+.+.+|.+-+.-.+.|++||.+.- +.=+++|++.|.|++++-|++-
T Consensus 7 l~~g~s~~l~~~~~~~rV~v~dp~Iadv~~~~~~~v~i~gk~~G~T~l~vw~~~~ 61 (72)
T PF13629_consen 7 LTVGQSRILRLPGPITRVAVGDPEIADVTVLSPNEVYITGKKPGTTTLIVWDKDG 61 (72)
T ss_pred EeCCCEEEEEcCCCcEEEEECCCCEEEEEEeCCCEEEEEEeCceeEEEEEECCCC
Confidence 345566667788888899999999998844 3457899999999999999873
No 12
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=79.59 E-value=6.6 Score=36.37 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=40.8
Q ss_pred eeeecCcEEEEEEEEeccCCCccccccceEEEEEEeeeeeEEEEEEEecCCceEEEEEceeeeEEEEEEEccC
Q 000455 1322 IHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRS 1394 (1487)
Q Consensus 1322 ~~lpvG~~~~~~V~~~D~~G~~F~~~~~~~~l~~~~n~~dlv~i~~~~~~~n~~~v~a~~~G~t~l~v~d~~~ 1394 (1487)
..+++|.+..+.+. ..+ -.+.+..+++..+. .-+.+.+++.|.+.|.|+|.|||+..
T Consensus 5 l~l~~g~s~~l~~~-------------~~~-~rV~v~dp~Iadv~--~~~~~~v~i~gk~~G~T~l~vw~~~~ 61 (72)
T PF13629_consen 5 LTLTVGQSRILRLP-------------GPI-TRVAVGDPEIADVT--VLSPNEVYITGKKPGTTTLIVWDKDG 61 (72)
T ss_pred EEEeCCCEEEEEcC-------------CCc-EEEEECCCCEEEEE--EeCCCEEEEEEeCceeEEEEEECCCC
Confidence 34666776665542 111 24667778888888 43457888999999999999999983
No 13
>PF13584 BatD: Oxygen tolerance
Probab=63.46 E-value=65 Score=40.91 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=64.6
Q ss_pred cceEEEecCcEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEeCCCCCCCCCCccccceEEEEEeEEEEEEEE-
Q 000455 894 GEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLY- 972 (1487)
Q Consensus 894 p~~vevevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~~~~~v~g~~~G~ttL~- 972 (1487)
+++.+|.+|..+.+.+++.+ ++..++......+++.-...++..++.+... .....-.|.+++...|.-+|=
T Consensus 19 vd~~~v~~ge~~~l~i~~~~-~~~~~~~p~l~~f~v~~~~~s~~~~~inG~~------~~~~~~~~~l~p~~~G~~~IP~ 91 (484)
T PF13584_consen 19 VDRNEVGLGETFQLTITING-DGDDPDLPELDGFEVLGPSQSSSTSIINGKV------SSSTTYTYTLQPKKTGTFTIPP 91 (484)
T ss_pred ECCcEEcCCCEEEEEEEEec-CcccCCCCCCCCeEEcceEEEEEEEEecCce------EEEEEEEEEEEecccceEEEce
Confidence 45556999999999999977 6677877776656652222222334433221 012345699999999999973
Q ss_pred EEEEccCCcEEEeecEEEEEeCCCe
Q 000455 973 VSARQQSGHEILSQPIRVEVYAPPR 997 (1487)
Q Consensus 973 as~~~~~G~~i~S~~~~I~VfpPL~ 997 (1487)
++++ -.|+.+.|.|++|+|-+.=.
T Consensus 92 ~~v~-v~Gk~~~S~pi~i~V~~~~~ 115 (484)
T PF13584_consen 92 FTVE-VDGKTYKSQPITIEVSKASQ 115 (484)
T ss_pred EEEE-ECCEEEeecCEEEEEEeccc
Confidence 3332 27899999999999986543
No 14
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=57.51 E-value=29 Score=33.30 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=45.6
Q ss_pred cCceeEEeeCCc----ceEEEEEccceeEEEEEECCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEe
Q 000455 803 NPEYNLLFFNPD----AKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDV 869 (1487)
Q Consensus 803 ~P~~~~i~~~p~----~~~~l~i~gGSG~~~~sss~~~Va~v~~~~~g~~~~~~~v~p~~~G~~~v~v~D~ 869 (1487)
.++...++..|+ .+..+++.||.+.+.|..++.-+.+.. . .+++...|..+|..+|+|.|-
T Consensus 16 P~~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg~~~g~~~---~---~~~~~~~~~~~G~h~l~vvD~ 80 (89)
T PF06832_consen 16 PPDGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDGEPLGTTQ---P---GHQLFWQPDRPGEHTLTVVDA 80 (89)
T ss_pred cCCCCEEEeCCCCCccceEEEEEeCCCCcEEEEECCEEcccCC---C---CCeEEeCCCCCeeEEEEEEcC
Confidence 344566666663 555679999999999999997664431 1 245888888999999999985
No 15
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=57.31 E-value=1.2e+02 Score=30.22 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=47.7
Q ss_pred EEEEecceEEEecCcEEEEEEEEEe---------cCCCEEecCCceeeeEEEEeecc-eEEEEeCC-CCCCCCCCccccc
Q 000455 889 IKIMSGEEISLMEGRSQSIDLMAGI---------DDGSTFDSFQYTYMDIRVHIEDH-IVELIDDD-ATSSPDGGYFSMS 957 (1487)
Q Consensus 889 I~l~~p~~vevevG~tv~~~v~v~d---------~~g~~f~~~~~~~m~l~l~~~~~-i~~l~~~~-~~s~~~~~~~~~~ 957 (1487)
|+|.+|.. ...|..+++.+.+.. .+|+...+.+...+.+. .+.+ ++++.-.. .+-+| --
T Consensus 1 mrir~p~~--~~~g~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~v~--~ng~~v~~~~~~~siS~NP------~l 70 (100)
T PF08770_consen 1 MRIRVPKA--AKKGGVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVEVT--YNGKPVFRADWGPSISENP------YL 70 (100)
T ss_dssp EEEE-SSC--EETTEEEEEEEEE----B-S-BB-TTS-BB--B-EEEEEEE--ETTEEEEEEEE-TTB-SS-------EE
T ss_pred Ceeecccc--ccCCCcEEEEEEEECCCccccccCCCCCCCChHheEEEEEE--ECCEEEEEEEeCCcccCCC------cE
Confidence 45666665 688999999998865 33444455555544444 4444 55554321 11111 35
Q ss_pred eEEEEEeEEEEEEEEEEEEccCCcEEE
Q 000455 958 SFKIMAKHLGITTLYVSARQQSGHEIL 984 (1487)
Q Consensus 958 ~~~v~g~~~G~ttL~as~~~~~G~~i~ 984 (1487)
.|.++|...| +|++..+|..|+...
T Consensus 71 ~F~~~~~~~g--~l~v~~~Dn~G~~~~ 95 (100)
T PF08770_consen 71 RFSFKGKKSG--TLTVTWTDNKGNSFS 95 (100)
T ss_dssp EEEEEESSSE--EEEEEEEETTS-EEE
T ss_pred EEEEecCCCc--EEEEEEEECCCCEEE
Confidence 6999999999 888888888887653
No 16
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=53.05 E-value=76 Score=30.67 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=44.2
Q ss_pred CCeEEEEEEEEcCCCCeEeecCCceEEEEecCCCcceEeecccCcccCCCcceEEEEEe-eeeeeEEEEEEEeeee
Q 000455 695 GQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQ-NESGLCVVRATASGFC 769 (1487)
Q Consensus 695 ~~~~~l~v~v~D~~g~~f~n~SsL~i~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~-~~~G~~~I~at~~gy~ 769 (1487)
.....|.+.+.|++|++.-+ ..+.|+.+. .....++.... .-+..|.. ...++ ...|..+|+|++.|+.
T Consensus 17 ~d~~~i~v~v~D~~Gnpv~~---~~V~f~~~~-~~~~~~~~~~~-~Td~~G~a-~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 17 SDAITLTATVTDANGNPVAG---QEVTFTTPS-GGALTLSKGTA-TTDANGIA-TVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred cccEEEEEEEECCCCCCcCC---CEEEEEECC-CceeeccCCee-eeCCCCEE-EEEEECCCCcEEEEEEEECCCc
Confidence 46788999999999998866 569999886 32222322111 12334432 22233 5789999999987654
No 17
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=51.22 E-value=1e+02 Score=29.47 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=43.1
Q ss_pred EEEecCcEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEe-----CCCCCCCCCCccccceEEEEEeEEEEEEE
Q 000455 897 ISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-----DDATSSPDGGYFSMSSFKIMAKHLGITTL 971 (1487)
Q Consensus 897 vevevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~-----~~~~s~~~~~~~~~~~~~v~g~~~G~ttL 971 (1487)
|.+..|+++.+.+.....+|-.- .+..+.+.+.+.. ....+...|. .+...|.++|++.|+++|
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W----------~~~~~~~~l~l~~~~~~~~~~~~~~vG~-~g~~~f~f~a~~~G~~~i 69 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSW----------SLSSDSDGLQLVSEEYIPDNSPSGLVGA-PGTRTFTFKALKPGTTTI 69 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEE----------EECTSTTTEEEEEEEEEESSTSSTSSTS-SEEEEEEEEESSSEEEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEE----------EEecCCCeEEEcCCcEEeCCCCcCCCCC-CcEEEEEEEEecCeeEEE
Confidence 35789999998888776666433 2222222333322 2111112232 345679999999999999
Q ss_pred EEEEEc
Q 000455 972 YVSARQ 977 (1487)
Q Consensus 972 ~as~~~ 977 (1487)
.+.+..
T Consensus 70 ~~~y~r 75 (92)
T PF09394_consen 70 KFEYRR 75 (92)
T ss_dssp EEEEEB
T ss_pred EEEEEC
Confidence 999974
No 18
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=31.87 E-value=3.6e+02 Score=27.55 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=67.1
Q ss_pred cceEEEecCcEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEeCCCCCCCCCCccccceEEEEEeEEEEEEEEE
Q 000455 894 GEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYV 973 (1487)
Q Consensus 894 p~~vevevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~~~~~v~g~~~G~ttL~a 973 (1487)
+++-..++|+++++.+..-...+ .+-+.+...++++....... . .....-.|.++..-.+...|.+
T Consensus 5 ~~~~~~~~Ge~~~v~v~~~~~~~---------~~~~~v~s~g~I~~~~~~~~---~--~~~~~~~~~v~~~~~P~~~v~~ 70 (136)
T PF07703_consen 5 TDKDSYKPGETAKVTVQSPFPNG---------TFLYLVESRGKIVSTGSVEL---K--NGSTTFEFPVTPDMAPNFYVLA 70 (136)
T ss_dssp E-SSSB-TTSEEEEEEEEESCES---------EEEEEEEETTEEEEEEEEEC---T--TTSSEEEEEE-GGGTSEEEEEE
T ss_pred cCCCCcCCCCEEEEEEEcCCCcc---------EEEEEEEECCeEEEEEEEEe---c--CCcEEEEEecchhcCCcEEEEE
Confidence 33334899999999987754311 12223332333444332210 0 1122456777777778888888
Q ss_pred EEEcc-CCcEEEeecEEEEEeCC----CeeecCeeEEecCCEEEEEEEeCCccccEEEEe
Q 000455 974 SARQQ-SGHEILSQPIRVEVYAP----PRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYT 1028 (1487)
Q Consensus 974 s~~~~-~G~~i~S~~~~I~VfpP----L~l~P~~l~Lv~Gs~~ql~~~GGP~p~~~v~fs 1028 (1487)
.+-.. .|+ +.+....|.|=+. +.+.+..-..-||+..++.++++| ++.+-..
T Consensus 71 ~~v~~~~g~-~~~~s~~i~V~~~~~~~v~l~~~~~~~~Pg~~~~~~i~~~~--~s~v~l~ 127 (136)
T PF07703_consen 71 YYVRPADGE-VVADSVWIEVEPCFELKVELTASPDEYKPGEEVTLRIKAPP--NSLVGLS 127 (136)
T ss_dssp EEETTCTCE-EEEEEEEEEBGCSGSSSEEEEESSSSBTTTSEEEEEEEEST--TEEEEEE
T ss_pred EEEcCCCCe-EEEEEEEEEecccccceEEEEEecceeCCCCEEEEEEEeCC--CCEEEEE
Confidence 88654 454 4456677777653 234454444569999999999964 5555443
No 19
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=31.10 E-value=1.9e+03 Score=31.89 Aligned_cols=43 Identities=30% Similarity=0.263 Sum_probs=29.4
Q ss_pred ceEEEEEEeccCCcceeeEEEEEecceeeEEeecCcEEEEeCCEEEEEEEEEec
Q 000455 371 GKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTL 424 (1487)
Q Consensus 371 G~~~V~a~d~~n~~~~~~~~V~V~~p~~i~i~p~~~~E~~vg~~l~l~v~~~~~ 424 (1487)
|-+ |.+-|+.+. +-++|+.|..+..+. -..+.++..++.+.|.
T Consensus 463 gl~-iqVlDINDh-----aPifvstpfq~tvlE-----nv~lg~~v~~vqaida 505 (2531)
T KOG4289|consen 463 GLV-IQVLDINDH-----APIFVSTPFQATVLE-----NVPLGYLVCHVQAIDA 505 (2531)
T ss_pred ceE-EEEEecCCC-----CceeEechhhhhhhh-----cccccceEEEEecccC
Confidence 444 677787665 567888887775553 3346778889988875
No 20
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=29.73 E-value=2.3e+02 Score=27.94 Aligned_cols=71 Identities=7% Similarity=0.093 Sum_probs=38.7
Q ss_pred EecCcEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEeCCCCCCCCCCccccceEEEEEeEEEEEEEEEEEE
Q 000455 899 LMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSAR 976 (1487)
Q Consensus 899 vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~~~~~v~g~~~G~ttL~as~~ 976 (1487)
..-+....+.+++.|.+|+|+.--. +.|........+.......... ..+...+.+++...|..+++|++.
T Consensus 19 a~g~~~~tltatV~D~~gnpv~g~~---V~f~~~~~~~~l~~~~~~~~Td----~~G~a~~tltst~aG~~~VtA~~~ 89 (100)
T PF02369_consen 19 ADGSDTNTLTATVTDANGNPVPGQP---VTFSSSSSGGTLSPTNTSATTD----SNGIATVTLTSTKAGTYTVTATVD 89 (100)
T ss_dssp SSSSS-EEEEEEEEETTSEB-TS-E---EEE--EESSSEES-CEE-EEE-----TTSEEEEEEE-SS-EEEEEEEEET
T ss_pred eCCcCcEEEEEEEEcCCCCCCCCCE---EEEEEcCCCcEEecCccccEEC----CCEEEEEEEEecCceEEEEEEEEC
Confidence 4457889999999999999996322 2221122222332110000000 124477899999999999999995
No 21
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=28.36 E-value=2.5e+02 Score=27.06 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=40.1
Q ss_pred cEEEEEEEEEecCCCEEecCCceeeeEEEEeecce-EEEEeCCCCCCCCCCccccceEEEEEeEEEEEEEEEEEE
Q 000455 903 RSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHI-VELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSAR 976 (1487)
Q Consensus 903 ~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i-~~l~~~~~~s~~~~~~~~~~~~~v~g~~~G~ttL~as~~ 976 (1487)
....+.+++.|.+|.+..... +.+..+..- +.+........ ..+-....+++...|..+++|++.
T Consensus 18 d~~~i~v~v~D~~Gnpv~~~~-----V~f~~~~~~~~~~~~~~~~Td----~~G~a~~~l~~~~~G~~~vta~~~ 83 (92)
T smart00634 18 DAITLTATVTDANGNPVAGQE-----VTFTTPSGGALTLSKGTATTD----ANGIATVTLTSTTAGVYTVTASLE 83 (92)
T ss_pred ccEEEEEEEECCCCCCcCCCE-----EEEEECCCceeeccCCeeeeC----CCCEEEEEEECCCCcEEEEEEEEC
Confidence 678899999999999998622 444444442 22211110001 123456777888888888888874
No 22
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=28.36 E-value=2.2e+02 Score=27.19 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=39.2
Q ss_pred eeEEEEEEeccCCCCCccEEEeeCCceeEEEecCcEE--EecccceEEEEEEeccCC
Q 000455 329 YQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVV--QAKKPGKATVKVVSIFDS 383 (1487)
Q Consensus 329 ~q~~~L~a~gGsg~~~~~y~WsSsn~~VatV~~~Gvv--ta~~~G~~~V~a~d~~n~ 383 (1487)
.+.+.|+|.||.+ .+.|.-.+.-+.+.....-+ .....|.-+|++.|....
T Consensus 31 ~~~l~l~a~~~~~----~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 31 RQPLVLKAAGGRG----PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred cceEEEEEeCCCC----cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEcCCCC
Confidence 5679999999988 99999999888666544332 223789999999886544
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=27.51 E-value=9.7e+02 Score=31.38 Aligned_cols=62 Identities=24% Similarity=0.432 Sum_probs=31.3
Q ss_pred eEEEecCceEEE--EEecCCcc---cccc--cce----eEEEEEeeCCcccccCceeeeeEecCCCcEEEEEecc-ccE
Q 000455 557 KLYLVPRTHVDV--LLVGGPEP---WEED--VDF----IETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQT-LGT 623 (1487)
Q Consensus 557 ev~L~~GSs~~~--~~~gGP~p---w~~e--~~~----~~~~~~~~e~~~~~~~~~~~~~v~~~~~~~~~V~C~~-lG~ 623 (1487)
++.|-.|..-.+ --+|-|.| |..+ .+| -+...+..|+ +-.-+.-+...|++.|+-+++. .|+
T Consensus 621 dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmped-----d~f~Itnvk~eD~GiYtC~A~n~AG~ 694 (873)
T KOG4194|consen 621 DLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPED-----DVFFITNVKIEDQGIYTCTAQNVAGQ 694 (873)
T ss_pred cceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCC-----CEEEEecccccccceeEEeeeccccc
Confidence 666666765554 44777887 4443 333 1223444333 1122223444688889544442 454
No 24
>PRK10177 putative invasin; Provisional
Probab=27.42 E-value=1.4e+02 Score=37.31 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=31.0
Q ss_pred EEEEEEEEEEEccCCcEEEeecEEEEEeCCCeeecC
Q 000455 966 LGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPH 1001 (1487)
Q Consensus 966 ~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL~l~P~ 1001 (1487)
.-.-+|.+++.|..|++..|..++|.|-+|+.+.|.
T Consensus 423 ~N~Y~ls~~a~D~kGn~~~Sn~i~v~Vt~p~~~~~~ 458 (465)
T PRK10177 423 SNRWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSN 458 (465)
T ss_pred CceEEEEEEEEECCCCccccceEEEEEeCCccccCC
Confidence 345678888899999999999999999999987764
No 25
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=27.25 E-value=2.8e+02 Score=27.35 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=40.4
Q ss_pred eCCCeEEEEEEEEcCCCCeEeecCCceEEEEecCCCcceEeeccc-CcccCCCcceEEEEEeeeeeeEEEEEEEeeee
Q 000455 693 ANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAY-GSQKSASSWERFLVLQNESGLCVVRATASGFC 769 (1487)
Q Consensus 693 ~~~~~~~l~v~v~D~~g~~f~n~SsL~i~W~~s~~~~l~~~~~~~-~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~ 769 (1487)
.......|.+.+.|++|+++ .+..+.|.... ..+.+.... ...-|..|....-.-..+.|..+|+|++.+..
T Consensus 20 ~g~~~~tltatV~D~~gnpv---~g~~V~f~~~~--~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~ 92 (100)
T PF02369_consen 20 DGSDTNTLTATVTDANGNPV---PGQPVTFSSSS--SGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGS 92 (100)
T ss_dssp SSSS-EEEEEEEEETTSEB----TS-EEEE--EE--SSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEE
T ss_pred CCcCcEEEEEEEEcCCCCCC---CCCEEEEEEcC--CCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcc
Confidence 56678999999999999887 67799993221 124443321 11123344332222236899999999987643
No 26
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=26.51 E-value=91 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.5
Q ss_pred eeeeecCcEEEEEEEEeccCCCcccccc
Q 000455 1321 VIHLAVGAECEIPISYYDALGTPFHEAH 1348 (1487)
Q Consensus 1321 ~~~lpvG~~~~~~V~~~D~~G~~F~~~~ 1348 (1487)
-.+..+|.++.++|...|..|+|-....
T Consensus 6 aakaK~Ge~I~ltVt~kda~G~pv~n~~ 33 (47)
T PF05688_consen 6 AAKAKVGETIPLTVTVKDANGNPVPNAP 33 (47)
T ss_pred hhheecCCeEEEEEEEECCCCCCcCCce
Confidence 3468899999999999999999998654
No 27
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=26.00 E-value=2.5e+02 Score=27.99 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=36.7
Q ss_pred cEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEeCCCCCCCCCCccccceEEEEEeEEEEEEEEEEEEccCCcE
Q 000455 903 RSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHE 982 (1487)
Q Consensus 903 ~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~~~~~v~g~~~G~ttL~as~~~~~G~~ 982 (1487)
.+-.+.+++.|.+|+++.--.. +.+. .+..-+++-+.. |..+.=...++|...|..+++-.+ .|+.
T Consensus 21 dta~LTfta~D~~g~pvsGl~~--l~f~--~~g~~vtls~it-------E~~GvYtATl~Gt~~G~vtI~P~v---~G~~ 86 (99)
T PF09134_consen 21 DTATLTFTARDANGNPVSGLSV--LAFV--QDGVPVTLSPIT-------ENPGVYTATLKGTSAGEVTITPQV---NGQP 86 (99)
T ss_dssp --EEEEEE-B-TTS-B--S--S--EEEE--EEES--EE---E-------E-SS-EEEEEE-SS-EEEEEEEEE---TTEE
T ss_pred ceEEEEEEEEcCCCCcccCcee--EEEE--ccCCCcEEcccc-------ccCCEEEEEEEcccCceEEEEEee---CCEE
Confidence 4667888999999999975431 1221 122234443322 111222356999999999999999 6776
Q ss_pred EEeecEEEEEeC
Q 000455 983 ILSQPIRVEVYA 994 (1487)
Q Consensus 983 i~S~~~~I~Vfp 994 (1487)
+...+.++.-||
T Consensus 87 l~~~~~k~tl~~ 98 (99)
T PF09134_consen 87 LATLQKKLTLIP 98 (99)
T ss_dssp -GGG-EEEEEE-
T ss_pred ccccceeEEEee
Confidence 666666666665
No 28
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=24.53 E-value=2.1e+03 Score=30.82 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=73.6
Q ss_pred eEEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEEecCCCEEecCCceeeeEEEEeecceEEEEeCCCCCCCCCCcccc
Q 000455 877 ASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSM 956 (1487)
Q Consensus 877 a~a~V~V~~i~~I~l~~p~~vevevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~ 956 (1487)
..|+|.+.+........ ....+.-|+++-+.-.+. ++++..=....|+.-+..++.++.+....
T Consensus 131 r~a~v~~a~~~~f~~~~-~~~t~~~g~ta~f~c~vn---~e~~p~i~w~kn~~pl~~~~r~i~lpsG~------------ 194 (1381)
T KOG4221|consen 131 RTAKVALAGLADFALQP-ESTTLLYGQTALFSCEVN---AEPVPTIMWLKNDQPLPLDSRVIVLPSGA------------ 194 (1381)
T ss_pred ceEEEEecccCccccCc-cceeEecCCcEEEEEEEc---CccCceeEEecccccccCCCcEEEcCCCc------------
Confidence 36777777777777663 333488899988887553 34444322333333233334322221100
Q ss_pred ceEEE---EEeEEEEEEEEEEEEccCCcEEEeecEEEEEe-CC-------CeeecCeeEEecCCEEEEEEEeCCccccEE
Q 000455 957 SSFKI---MAKHLGITTLYVSARQQSGHEILSQPIRVEVY-AP-------PRIHPHDIFLVPGASYMLTLKGGPTVGVYV 1025 (1487)
Q Consensus 957 ~~~~v---~g~~~G~ttL~as~~~~~G~~i~S~~~~I~Vf-pP-------L~l~P~~l~Lv~Gs~~ql~~~GGP~p~~~v 1025 (1487)
..| .....|....+|+- .+..-+|....+.|- .| |--.|+..+.+-|..+.|.+.----|...|
T Consensus 195 --L~I~~~qp~d~g~yrc~vt~---g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v 269 (1381)
T KOG4221|consen 195 --LEISGLQPSDTGEYRCVVTG---GASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSV 269 (1381)
T ss_pred --EEecccccCCCceEEEEEec---CCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCce
Confidence 001 11112333333332 222233444444444 22 224488888888999888877433345678
Q ss_pred EEeecCceEEEEE
Q 000455 1026 DYTSTDEEIATIH 1038 (1487)
Q Consensus 1026 ~fs~~n~~va~V~ 1038 (1487)
.|-- |...+.++
T Consensus 270 ~Wlr-ng~~i~~d 281 (1381)
T KOG4221|consen 270 KWLR-NGEKISVD 281 (1381)
T ss_pred EEee-CCeeeeec
Confidence 8976 77777775
No 29
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=8.8e+02 Score=29.01 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=49.3
Q ss_pred ecCCCCceEEEEeCCceEEEecCccEEEEEeeeeEEEEEEecccCCCcceEEEEEecCCeEE
Q 000455 118 VALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLW 179 (1487)
Q Consensus 118 i~lP~~~y~w~~~n~~Va~vd~~~g~vtA~~~G~t~V~v~d~~~~~~~~~~tI~Vv~P~~L~ 179 (1487)
+..|.-|-.+.++-.++|.-|+ +|++-|...|.-.|-+-|.+..+..|-.++.+-+|..-+
T Consensus 129 lR~~~cqg~l~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e 189 (311)
T KOG1446|consen 129 LRVKKCQGLLNLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE 189 (311)
T ss_pred ecCCCCceEEecCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence 3446777788888889999999 999999999998999999998877787777765444333
No 30
>PRK15315 outer membrane protein RatA; Provisional
Probab=22.32 E-value=3.3e+02 Score=38.87 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=79.9
Q ss_pred cceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEeeeeeE------EEEEEE-e-cCCceEEEEEceeeeEEEEEE
Q 000455 1319 LNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDV------VSINYT-L-NGSGKIYLKAKQHGRALVQVS 1390 (1487)
Q Consensus 1319 ~~~~~lpvG~~~~~~V~~~D~~G~~F~~~~~~~~l~~~~n~~dl------v~i~~~-~-~~~n~~~v~a~~~G~t~l~v~ 1390 (1487)
+.-.++.+|.+++++|...|..|++-...+..+...-+.||-.. |+|... . +..+.+.=-.=..|+++|.|.
T Consensus 216 ~~A~KvkvGesItLTVttk~~~g~~v~nv~f~i~~~da~NRQ~~vnn~~pV~vg~telt~~~~~Y~G~TDanG~aTv~vT 295 (1865)
T PRK15315 216 FEASKVKVGESITLTVTTKACDGEPAINAPFVIRREDAINRQGVVNNANPVRVGNTELTTAQTEYHGVTDGQGNATVVVT 295 (1865)
T ss_pred hhhhccccCCcEEEEEEeeccCCcccCceeEEEEeccchhccCCcCCCCceEECCeecccccceEeeeeCCCCeEEEEEe
Confidence 34567999999999999999999988765544444466777643 445311 0 011223355567899999999
Q ss_pred EccCCCcceEEEEeeccEeecCCCeEEeecEEEEEEeccCC-CcceeEEeeCCcE
Q 000455 1391 MNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSD-QVSGHWFSDNESV 1444 (1487)
Q Consensus 1391 d~~~~~~~dyi~v~V~~~i~P~~~~L~vG~~~~fs~~~~~~-~~~g~wsssn~~V 1444 (1487)
+.+.+|.-..+.+.... ..++.-..=+-|++.-.|+ ++...|-==.+.+
T Consensus 296 qpnG~GVKT~L~v~~~s-----~~t~t~~~dVIFTViTSPDs~~AnMWGHM~e~i 345 (1865)
T PRK15315 296 QENGPGVKTRLIVSSQN-----YPTLTDNVDVIFTTITSPDSDKASMYGHMLESA 345 (1865)
T ss_pred CCCCCceeeeEEEEecc-----CccccccccEEEEecCCCCchhhhhhhcchhhh
Confidence 99988887777666541 2234444556688877777 7777775444433
No 31
>PF13584 BatD: Oxygen tolerance
Probab=20.70 E-value=1.8e+03 Score=28.00 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=43.2
Q ss_pred eEEEeeccceEEEEEEEEeccCC--CCceEEEEEEeeee--------------EEEEEecceEEEecCcEEEEEEEEEec
Q 000455 851 QLMLSPKGLGTALVTVYDVGLAP--PRAASALVQVADVD--------------WIKIMSGEEISLMEGRSQSIDLMAGID 914 (1487)
Q Consensus 851 ~~~v~p~~~G~~~v~v~D~cl~~--~~~a~a~V~V~~i~--------------~I~l~~p~~vevevG~tv~~~v~v~d~ 914 (1487)
++.+.|++.|..+|=..-+...+ .......|.|.+.. .+++.+ ++-++-+|+.+.+.+++|..
T Consensus 76 ~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~~~~~~~~~~~~~~~~~~~l~~~v-~~~~~Yvge~v~lt~~ly~~ 154 (484)
T PF13584_consen 76 TYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVSKASQSPSQPPSNADDDVFLEAEV-SKKSVYVGEPVILTLRLYTR 154 (484)
T ss_pred EEEEEecccceEEEceEEEEECCEEEeecCEEEEEEecccCCccccccccccEEEEEEe-CCCceecCCcEEEEEEEEEe
Confidence 47899999998887666553333 12334556666442 344443 34458999999999999975
Q ss_pred CCC
Q 000455 915 DGS 917 (1487)
Q Consensus 915 ~g~ 917 (1487)
..-
T Consensus 155 ~~~ 157 (484)
T PF13584_consen 155 NNF 157 (484)
T ss_pred cCc
Confidence 543
Done!