Query 000455
Match_columns 1487
No_of_seqs 230 out of 275
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 16:42:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000455.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_234-238//hhsearch_pdb/000455hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ncx_A Intimin, intimin adhere 1.0 1 1 93.6 6.4 91 299-399 4-97 (189)
2 1f00_I Intimin; immunoglobulin 1.0 1 1 60.1 11.9 146 213-382 22-172 (282)
3 1cwv_A Invasin; integrin-bindi 1.0 1 1 58.4 30.5 330 693-1064 22-384 (492)
4 2l04_A Major tail protein V; b 1.0 1 1 54.3 6.1 47 346-393 39-88 (91)
5 3ncx_A Intimin, intimin adhere 1.0 1 1 52.7 3.7 68 989-1061 4-84 (189)
6 2l04_A Major tail protein V; b 1.0 1 1 52.5 6.1 81 84-173 6-89 (91)
7 1cwv_A Invasin; integrin-bindi 1.0 1 1 44.0 24.6 231 211-498 27-286 (492)
8 1f00_I Intimin; immunoglobulin 1.0 1 1 41.8 10.8 154 887-1060 4-171 (282)
9 1f1s_A Hyaluronate lyase; the 1.0 1 1 40.9 6.7 52 344-397 27-78 (814)
10 3tkv_A FDEC fragment B, attach 1.0 1 1 33.0 12.8 15 698-712 314-328 (414)
No 1
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=93.65 Aligned_cols=91 Identities=26% Similarity=0.445 Sum_probs=72.3
Q ss_pred EEEEEEEEEEEECCCCC-CCCEEE--EECCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEECCCEEEECCCCEEEE
Q ss_conf 99998457994126778-754168--317667236799999204778885089961795159991180799515643999
Q 000455 299 EIMVCDRIKFSLDQTNG-VSESIL--LPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATV 375 (1487)
Q Consensus 299 ev~i~~~i~i~~~~~~~-~p~~i~--lp~~~~~~q~~~L~a~gGsg~~~~~y~WsSsn~~VatV~~~Gvvta~~~G~~~I 375 (1487)
||++|.++.| |++.+ ....+- ||-.+..|.+|+|+|.||.+ +|+|+|+||+||+||..|+|+++..|+++|
T Consensus 4 ~v~ff~~l~i--d~~v~iig~~v~g~lP~~wlqygqFkL~a~Ggn~----~ytW~Ssdp~IAsVDssG~VT~~~kGtatI 77 (189)
T 3ncx_A 4 EVTFFDELKI--DNKVDIIGNNVRGELPNIWLQYGQFKLKASGGDG----TYSWYSENTSIATVDASGKVTLNGKGSVVI 77 (189)
T ss_dssp CCCCCCCCEE--CSSEEETTTTEEESCCSSEETTCEEECCEESTTS----CEEEEESCTTTEEECTTSEEEECSSSCEEE
T ss_pred CEEEEEEEEE--CCCEEEEECCCCCCCCCHHHHCEEEEEEECCCCC----CEEEEECCCCEEEECCCCCEEEECCCCEEE
T ss_conf 1687646760--7844899624477788301102699998469986----268884899867885898389813684799
Q ss_pred EEEECCCCCCEEEEEEEEECCEEE
Q ss_conf 999413885132599999651006
Q 000455 376 KVVSIFDSFNYDEIVIEVSTPSSM 399 (1487)
Q Consensus 376 ~a~d~~n~~~~~~~~V~V~~p~~i 399 (1487)
+|.+..+. ++...|..|..|
T Consensus 78 Tats~dg~----tatytvt~p~~~ 97 (189)
T 3ncx_A 78 KATSGDKQ----TVSYTIKAPSYM 97 (189)
T ss_dssp EEEETTSC----EEEEEECCCSCE
T ss_pred EEECCCCC----EEEEEEECCCEE
T ss_conf 99918997----689999746028
No 2
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=60.13 Aligned_cols=146 Identities=22% Similarity=0.286 Sum_probs=86.4
Q ss_pred EEEEEEECCCCCCCEEEEECCCCEEEEECCCCEE--EEEECCCCCCEEEEEEECEEEEEEEEEEEEEEEEEEEEECCCCC
Q ss_conf 9999997289995328830378179910775218--99312576510367775579999523349999999886425553
Q 000455 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECW--RTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDT 290 (1487)
Q Consensus 213 ~i~v~l~d~~~~~~~i~~~~~~~i~i~~~~~~~~--~i~~~~~~~n~~~~~~n~~~v~a~~~G~~tI~Asl~~~~~~~~~ 290 (1487)
.+++.+.| . | +++- +..+.+..+..... ... ...+|... --++..++|..+|+|++.....
T Consensus 22 t~tatV~D-~-g-npv~---g~~V~fs~~~G~l~~~~~~---Td~~G~at----vtltst~aG~~~VtA~v~~~~~---- 84 (282)
T 1f00_I 22 TYTVKVMK-G-D-KPVS---NQEVTFTTTLGKLSNSTEK---TDTNGYAK----VTLTSTTPGKSLVSARVSDVAV---- 84 (282)
T ss_dssp EEEEEEEE-T-T-EECT---TCEEEEEESSSEESCSEEE---CCTTSEEE----EEEECSSCEEECEEEEETTCCC----
T ss_pred EEEEEEEE-C-C-CCCC---CCEEEEECCCCCCCCCEEE---ECCCCEEE----EEEECCCCEEEEEEEEECCCCC----
T ss_conf 99999997-9-9-2167---8679998589731365257---78995799----9998277547999999778764----
Q ss_pred EEEEEEEEEEEEEEEEEEEECC--CCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEE-CCCEEEE
Q ss_conf 4788877899998457994126--778754168317667236799999204778885089961795159991-1807995
Q 000455 291 KEVLKVVQEIMVCDRIKFSLDQ--TNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT-ASGVVQA 367 (1487)
Q Consensus 291 ~~~i~~~qev~i~~~i~i~~~~--~~~~p~~i~lp~~~~~~q~~~L~a~gGsg~~~~~y~WsSsn~~VatV~-~~Gvvta 367 (1487)
. .+ .+.+.++.++.++-.. ..+....--||-..-..-.|+|.+.+|.+ +|.|+|+++.+++|+ ..|+++.
T Consensus 85 -~-~~-a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n~----~ytWsSs~~~~~sVd~~~G~Vt~ 157 (282)
T 1f00_I 85 -D-VK-APEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTL 157 (282)
T ss_dssp -C-EE-CCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEE
T ss_pred -C-CC-CCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC----EEEEECCCCCEEEECCCCCEEEE
T ss_conf -2-34-45512550121123215630652576687633111599999469961----57774268726997078766997
Q ss_pred CCCCEEEEEEEECCC
Q ss_conf 156439999994138
Q 000455 368 KKPGKATVKVVSIFD 382 (1487)
Q Consensus 368 ~~~G~~~I~a~d~~n 382 (1487)
...|+++|+|.+..+
T Consensus 158 ~~~GtvtITatsg~~ 172 (282)
T 1f00_I 158 KEKGTTTISVISSDN 172 (282)
T ss_dssp CSSSCEEEEEEETTT
T ss_pred CCCCEEEEEEECCCC
T ss_conf 788559999996998
No 3
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=58.40 Aligned_cols=330 Identities=14% Similarity=0.113 Sum_probs=171.8
Q ss_pred ECCC-EEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEC
Q ss_conf 0797-699999999589984761288469999628885259613557655788632799976300049999999666513
Q 000455 693 ANGQ-TIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDA 771 (1487)
Q Consensus 693 ~~~r-~~~i~v~v~D~~g~~f~n~ssL~i~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~~~ 771 (1487)
.+|. ...+.+.+.|++|+++ .+..+.|...+...+.... ..-|.+|....-.-..+.|..+|+|++.|-...
T Consensus 22 AdG~~~~~ltatV~D~~Gnpv---~g~~Vtf~~~~g~~~~~~t----~~Td~~G~a~~tltst~aG~~~VtAt~~g~s~s 94 (492)
T 1cwv_A 22 ANGKTAITVEFTVADFEGKPL---AGQEVVITTNNGALPNKIT----EKTDANGVARIALTNTTDGVTVVTAEVEGQRQS 94 (492)
T ss_dssp SSSSSCEEEEEEEECTTSCBC---CSCEEEEECCTTCBSCEEE----EECCTTSEEEEEEBCSSCEEEEEEEEETTEEEE
T ss_pred ECCCCEEEEEEEEECCCCCCC---CCCEEEEEECCCCCCCCCC----EEECCCCEEEEEEECCCCEEEEEEEEECCCCCE
T ss_conf 078760899999994899987---9988999978984014420----445899659999976765279999997984102
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCEEEEEECCCCEEEEEECCCEE------EEEEEECCCCEEEEEECCC
Q ss_conf 6897521102223441111499999632498472449831876169999913314------9999997854099994168
Q 000455 772 KDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSC------FLEAAVNDSQVVEVIQAPE 845 (1487)
Q Consensus 772 ~l~~~~~~~~~~~~~~i~~~iel~iv~~i~l~P~~~~i~~~p~~~~~l~i~gGSG------~~~~sss~~~Va~v~~~~~ 845 (1487)
..+.|....... .. ..+.+.|+...--.......++.+....| .+.|+..+..+..++.+.+
T Consensus 95 ----~~v~f~a~~~~a--~~------s~l~~~~~~~~A~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~~~~Ttd~~ 162 (492)
T 1cwv_A 95 ----VDTHFVKGTIAA--DK------STLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHND 162 (492)
T ss_dssp ----EEEEEECCCBCG--GG------CEEEEESSEEETTSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEECSS
T ss_pred ----EEEEEEECCCCC--CC------EEEEEECCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCC
T ss_conf ----678986314764--32------059983341241773048999999948999958858999977984234686689
Q ss_pred CCEEEEEEEEECCCEEEEEEEEEECCCCCCC--EEEEEEEE-EE------EEEEEEECCEEEEECCCEEEEEEEEEECCC
Q ss_conf 6045569994431229999999900599975--27999996-62------279999562588851759999999972699
Q 000455 846 GLRCLQLMLSPKGLGTALVTVYDVGLAPPRA--ASALVQVA-DV------DWIKIMSGEEISLMEGRSQSIDLMAGIDDG 916 (1487)
Q Consensus 846 g~~~~~~~v~p~~~G~~~I~v~D~cl~~~~~--a~a~V~V~-~i------~~I~i~~p~~v~vevG~tv~i~v~v~d~~g 916 (1487)
|. -.+.++....|..+|++.- ..... ....|.+. +. ..|.+. ++.+...-+....+.+++.|.+|
T Consensus 163 G~--at~tlts~~aG~~tVtA~v---~g~~~~~~s~~vtf~a~~~~~~~~~~l~v~-~~~~~A~g~~~~tltatv~D~~G 236 (492)
T 1cwv_A 163 GT--YSAPLTSTTLGVATVTVKV---DGAAFSVPSVTVNFTADPIPDAGRSSFTVS-TPDILADGTMSSTLSFVPVDKNG 236 (492)
T ss_dssp SE--EEEEEECSSCEEEEEEEEE---TTEEEEEEEEEEEEECCSSCCTTTCEEEES-CSEEETTSCCCEEEEEECBCTTS
T ss_pred CE--EEEEEECCCCEEEEEEEEE---CCCCCCCCCEEEEEECCCCCCCCEEEEEEC-CCCEEECCCCEEEEEEEEECCCC
T ss_conf 48--9999984676389999998---885212342579998167654301357626-66166078640899999998998
Q ss_pred CEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEECEEEEEECCC
Q ss_conf 97955782233699984012699980899999999954321499999277789999999714871787531899996898
Q 000455 917 STFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPP 996 (1487)
Q Consensus 917 ~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~~~~~v~g~~~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL 996 (1487)
.++.-..- +.|... ...+.+.+.. +..+.....+++...|..+++|++. |........+|+.|+..
T Consensus 237 Npv~g~~~--V~f~~~--G~~v~~s~~T-------~~~G~~t~t~t~~~aG~~tVtA~~~---g~~~~~~~~~i~f~~~~ 302 (492)
T 1cwv_A 237 HFISGMQG--LSFTQN--GVPVSISPIT-------EQPDSYTATVVGNSVGDVTITPQVD---TLILSTLQKKISLFPVP 302 (492)
T ss_dssp CBCCSCCS--EEEEEE--ESCCEECCCE-------ECSSCEEEEEECSSCEEEEEEEEET---TEECGGGCEEEEEECCC
T ss_pred CCCCCCCE--EEEECC--CCEEEEEEEE-------CCCCEEEEEEECCCCEEEEEEEEEC---CCCCCCCCCEEEEEEEC
T ss_conf 99467744--999538--9425321373-------3785499999758613799999978---83345664207999631
Q ss_pred E-----E----------ECCEEEEECCCEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEEEEE--EEEEEEEE
Q ss_conf 4-----5----------16736990297799999727733608999562750899991442799993553--79999997
Q 000455 997 R-----I----------HPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGN--TTLIATVF 1059 (1487)
Q Consensus 997 ~-----l----------~P~~i~Lv~Gs~~qi~~~GGP~p~~~i~fs~~n~~va~V~~~~G~Vt~~s~G~--~~It~~~~ 1059 (1487)
. + .|. +..-|+.+|+...|+|..+..+.|+++++..+++|. +|+++=...|. .+|+++..
T Consensus 303 ~~~~i~vng~~~~~~~gfP~--tgf~~A~f~~~~~~~~~~n~~y~wsss~~~~~tvd~-~G~vt~~~~~~~~vtITat~~ 379 (492)
T 1cwv_A 303 TLTGILVNGQNFATDKGFPK--TIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVND-QGQVTITYQTYSEVAVTAKSK 379 (492)
T ss_dssp CEEEEEETTEEECTTSCCCS--EEETTCEEEEEETTCGGGGGGEEEEESSTTTEEECT-TCEEEECSCCSSCEEEEEEES
T ss_pred CCCEEEECCCCCCCCCCCCC--EEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEECC-CCEEEEEECCCCEEEEEEEEC
T ss_conf 32127853621335678874--158769999912896366772311246862588788-835999954897799999968
Q ss_pred CCCCE
Q ss_conf 27845
Q 000455 1060 GNGDV 1064 (1487)
Q Consensus 1060 ~~~g~ 1064 (1487)
+..+.
T Consensus 380 ~~~~~ 384 (492)
T 1cwv_A 380 KFPSY 384 (492)
T ss_dssp SSTTC
T ss_pred CCCCC
T ss_conf 89982
No 4
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=54.29 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=22.3
Q ss_pred CEEEEECCCEEEEEECCC---EEEECCCCEEEEEEEECCCCCCEEEEEEEE
Q ss_conf 089961795159991180---799515643999999413885132599999
Q 000455 346 DYKWFSSDMATVSITASG---VVQAKKPGKATVKVVSIFDSFNYDEIVIEV 393 (1487)
Q Consensus 346 ~y~WsSsn~~VatV~~~G---vvta~~~G~~~I~a~d~~n~~~~~~~~V~V 393 (1487)
.+.|+|+|++||+|+.+| .|++...|+++|+|...++ ...++|.|.|
T Consensus 39 ~vtwsSsd~~vATVd~~G~~~~Vt~v~~GtatITatt~dG-~~~at~~VtV 88 (91)
T 2l04_A 39 SFRAVSADKTKATVSVSGMTITVNGVAAGKVNIPVVSGNG-EFAAVAEITV 88 (91)
T ss_dssp CEEECCSCCSSCEEEEETTEEEEECSSSEEEECCEEETTT-TEEECCEEEE
T ss_pred EEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEEEECCC-CEEEEEEEEE
T ss_conf 8999979999999996699999999707579999998999-9899999999
No 5
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=52.70 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=55.4
Q ss_pred EEEEECCCEEECCEEEEE-------------CCCEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEEEEEEEEE
Q ss_conf 999968984516736990-------------2977999997277336089995627508999914427999935537999
Q 000455 989 RVEVYAPPRIHPHDIFLV-------------PGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLI 1055 (1487)
Q Consensus 989 ~I~VfpPL~l~P~~i~Lv-------------~Gs~~qi~~~GGP~p~~~i~fs~~n~~va~V~~~~G~Vt~~s~G~~~It 1055 (1487)
+++-|.||.++- ++.++ -.+.|++...|| +..+.|+++|++||+||. +|+|+++..|.++|+
T Consensus 4 ~v~ff~~l~id~-~v~iig~~v~g~lP~~wlqygqFkL~a~Gg---n~~ytW~Ssdp~IAsVDs-sG~VT~~~kGtatIT 78 (189)
T 3ncx_A 4 EVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGG---DGTYSWYSENTSIATVDA-SGKVTLNGKGSVVIK 78 (189)
T ss_dssp CCCCCCCCEECS-SEEETTTTEEESCCSSEETTCEEECCEEST---TSCEEEEESCTTTEEECT-TSEEEECSSSCEEEE
T ss_pred CEEEEEEEEECC-CEEEEECCCCCCCCCHHHHCEEEEEEECCC---CCCEEEEECCCCEEEECC-CCCEEEECCCCEEEE
T ss_conf 168764676078-448996244777883011026999984699---862688848998678858-983898136847999
Q ss_pred EEEECC
Q ss_conf 999727
Q 000455 1056 ATVFGN 1061 (1487)
Q Consensus 1056 ~~~~~~ 1061 (1487)
++..++
T Consensus 79 ats~dg 84 (189)
T 3ncx_A 79 ATSGDK 84 (189)
T ss_dssp EEETTS
T ss_pred EECCCC
T ss_conf 991899
No 6
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=52.48 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=46.3
Q ss_pred EECEEEECCCCEEEEECCEEEEEEEEEECCCEEEECCCCCCEEEEEECCCEEEEECCCC---EEEEEEEEEEEEEEEECC
Q ss_conf 63158927955489405679999999975830376179994499992874599966722---799995440799999564
Q 000455 84 AEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMG---LTQALRLGQTAVIVEDTR 160 (1487)
Q Consensus 84 ~e~i~L~P~~~vyl~~G~~i~y~v~~~~qg~~~~i~lP~~~y~w~~~n~~Va~vd~~~g---~vtA~~~G~t~V~v~d~~ 160 (1487)
+..|.|.| ..++|.+|.+.+.++...-.+ ..+..+.|+++|++||++|. .| .++|++.|++.|++...+
T Consensus 6 vt~i~l~~-~~~~l~vG~t~~L~atv~P~~------Atnk~vtwsSsd~~vATVd~-~G~~~~Vt~v~~GtatITatt~d 77 (91)
T 2l04_A 6 ATGMTVTP-ASTSVVKGQSTTLTVAFQPEG------VTDKSFRAVSADKTKATVSV-SGMTITVNGVAAGKVNIPVVSGN 77 (91)
T ss_dssp CSCEEEEC-CCEEEETTCEEEEEEEECCSS------CCCCCEEECCSCCSSCEEEE-ETTEEEEECSSSEEEECCEEETT
T ss_pred EEEEEEEC-CCEEEECCCEEEEEEEEECCC------CCCCEEEEEECCCCEEEEEC-CCCEEEEEEECCCEEEEEEEECC
T ss_conf 33899808-714997698799999995364------67448999979999999996-69999999970757999999899
Q ss_pred CCCCCCEEEEEEE
Q ss_conf 4787431899996
Q 000455 161 VAGHTQVSSLNVV 173 (1487)
Q Consensus 161 ~~~~~~~~tI~Vv 173 (1487)
. +..++|.|+|.
T Consensus 78 G-~~~at~~VtV~ 89 (91)
T 2l04_A 78 G-EFAAVAEITVT 89 (91)
T ss_dssp T-TEEECCEEEEE
T ss_pred C-CEEEEEEEEEE
T ss_conf 9-98999999997
No 7
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=44.04 Aligned_cols=231 Identities=13% Similarity=0.149 Sum_probs=119.2
Q ss_pred EEEEEEEEECCCCCCCEEEEECCCCEEEEECCCCE---EEEEECCCCCCEEEEEEECEEEEEEEEEEEEEEEEEEEEECC
Q ss_conf 99999999728999532883037817991077521---899312576510367775579999523349999999886425
Q 000455 211 QYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSEC---WRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGL 287 (1487)
Q Consensus 211 ~y~i~v~l~d~~~~~~~i~~~~~~~i~i~~~~~~~---~~i~~~~~~~n~~~~~~n~~~v~a~~~G~~tI~Asl~~~~~~ 287 (1487)
...+.+.+.|++ | +++- +..+.+..+.... .... ...+|.+. ..++..++|..+|+|++.+.
T Consensus 27 ~~~ltatV~D~~-G-npv~---g~~Vtf~~~~g~~~~~~t~~---Td~~G~a~----~tltst~aG~~~VtAt~~g~--- 91 (492)
T 1cwv_A 27 AITVEFTVADFE-G-KPLA---GQEVVITTNNGALPNKITEK---TDANGVAR----IALTNTTDGVTVVTAEVEGQ--- 91 (492)
T ss_dssp CEEEEEEEECTT-S-CBCC---SCEEEEECCTTCBSCEEEEE---CCTTSEEE----EEEBCSSCEEEEEEEEETTE---
T ss_pred EEEEEEEEECCC-C-CCCC---CCEEEEEECCCCCCCCCCEE---ECCCCEEE----EEEECCCCEEEEEEEEECCC---
T ss_conf 089999999489-9-9879---98899997898401442044---58996599----99976765279999997984---
Q ss_pred CCCEEEEEEEEEEEEEE--------EEEEEECCCCCCCCEEEEECCCCCE-EEEEEEEECCCCC--CCCCEEEEECCCEE
Q ss_conf 55347888778999984--------5799412677875416831766723-6799999204778--88508996179515
Q 000455 288 HDTKEVLKVVQEIMVCD--------RIKFSLDQTNGVSESILLPWAPGIY-QEVELMATGGCAK--TSSDYKWFSSDMAT 356 (1487)
Q Consensus 288 ~~~~~~i~~~qev~i~~--------~i~i~~~~~~~~p~~i~lp~~~~~~-q~~~L~a~gGsg~--~~~~y~WsSsn~~V 356 (1487)
.....+.+.. .+.+ .|..+.- .+.. ..++++.....|. ......|+..+..+
T Consensus 92 -------s~s~~v~f~a~~~~a~~s~l~~-------~~~~~~A---~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~ 154 (492)
T 1cwv_A 92 -------RQSVDTHFVKGTIAADKSTLAA-------VPTSIIA---DGLMASTITLELKDTYGDPQAGANVAFDTTLGNM 154 (492)
T ss_dssp -------EEEEEEEEECCCBCGGGCEEEE-------ESSEEET---TSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEE
T ss_pred -------CCEEEEEEEECCCCCCCEEEEE-------ECCCEEC---CCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCE
T ss_conf -------1026789863147643205998-------3341241---7730489999999489999588589999779842
Q ss_pred EEE--ECCCEEEEC----CCCEEEEEEEECCCCCCEEEEEEEEEC-C------EEEEEEECCCEEEEE--CCEEEEEEEE
Q ss_conf 999--118079951----564399999941388513259999965-1------006992267379970--9799999999
Q 000455 357 VSI--TASGVVQAK----KPGKATVKVVSIFDSFNYDEIVIEVST-P------SSMVMLRNFPVETVV--GSHLQAAVTM 421 (1487)
Q Consensus 357 atV--~~~Gvvta~----~~G~~~I~a~d~~n~~~~~~~~V~V~~-p------~~i~i~p~~~~E~~v--g~~l~l~v~~ 421 (1487)
..+ +.+|+.+.. ..|..+|+|.-.....-.....|.+.. + ..+.+.+ -+... .+...|.+++
T Consensus 155 ~~~Ttd~~G~at~tlts~~aG~~tVtA~v~g~~~~~~s~~vtf~a~~~~~~~~~~l~v~~---~~~~A~g~~~~tltatv 231 (492)
T 1cwv_A 155 GVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVST---PDILADGTMSSTLSFVP 231 (492)
T ss_dssp CCCEECSSSEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEEEECCSSCCTTTCEEEESC---SEEETTSCCCEEEEEEC
T ss_pred EEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECC---CCEEECCCCEEEEEEEE
T ss_conf 346866894899999846763899999988852123425799981676543013576266---61660786408999999
Q ss_pred EECCCCEECCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEE
Q ss_conf 80398231035897307999627751899136778762133687101246788887049999842154999999941
Q 000455 422 KTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSK 498 (1487)
Q Consensus 422 ~~~~g~~Fs~c~~l~~~v~ws~d~~vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~C~~~~v~a~~~G~t~l~vs~~~ 498 (1487)
.|.+|+++..... +.|+.+...+...+ +. ...|. ....+.+...|..++++.+.+
T Consensus 232 ~D~~GNpv~g~~~----V~f~~~G~~v~~s~------~T----------~~~G~--~t~t~t~~~aG~~tVtA~~~g 286 (492)
T 1cwv_A 232 VDKNGHFISGMQG----LSFTQNGVPVSISP------IT----------EQPDS--YTATVVGNSVGDVTITPQVDT 286 (492)
T ss_dssp BCTTSCBCCSCCS----EEEEEEESCCEECC------CE----------ECSSC--EEEEEECSSCEEEEEEEEETT
T ss_pred ECCCCCCCCCCCE----EEEECCCCEEEEEE------EE----------CCCCE--EEEEEECCCCEEEEEEEEECC
T ss_conf 9899899467744----99953894253213------73----------37854--999997586137999999788
No 8
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=41.77 Aligned_cols=154 Identities=13% Similarity=0.106 Sum_probs=96.0
Q ss_pred EEEEEEECCEEEEECCCEEEEEEEEEECCCCEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 27999956258885175999999997269997955782233699984012699980899999999954321499999277
Q 000455 887 DWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHL 966 (1487)
Q Consensus 887 ~~I~i~~p~~v~vevG~tv~i~v~v~d~~g~~f~~~~~~~m~l~l~~~~~i~~l~~~~~~s~~~~~~~~~~~~~v~g~~~ 966 (1487)
..|.++ .+.+...=.....+.+++.| +|.++.-- ...+..++.. +....... ...+-....++....
T Consensus 4 ~~l~~~-k~~a~AdG~d~~t~tatV~D-~gnpv~g~-----~V~fs~~~G~--l~~~~~~T----d~~G~atvtltst~a 70 (282)
T 1f00_I 4 TEIKAD-KTTAVANGQDAITYTVKVMK-GDKPVSNQ-----EVTFTTTLGK--LSNSTEKT----DTNGYAKVTLTSTTP 70 (282)
T ss_dssp EEEEES-CSEEESSSCCCEEEEEEEEE-TTEECTTC-----EEEEEESSSE--ESCSEEEC----CTTSEEEEEEECSSC
T ss_pred EEEEEC-CCCEECCCCCEEEEEEEEEE-CCCCCCCC-----EEEEECCCCC--CCCCEEEE----CCCCEEEEEEECCCC
T ss_conf 799976-77264167221899999997-99216786-----7999858973--13652577----899579999982775
Q ss_pred EEEEEEEEEECCCCCEEEEECEEEEEECCCEEECCEEE-------------EECCCEEEEEEEECCCCCCEEEEEECCCE
Q ss_conf 78999999971487178753189999689845167369-------------90297799999727733608999562750
Q 000455 967 GITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIF-------------LVPGASYMLTLKGGPTVGVYVDYTSTDEE 1033 (1487)
Q Consensus 967 G~ttL~as~~~~~G~~i~S~~~~I~VfpPL~l~P~~i~-------------Lv~Gs~~qi~~~GGP~p~~~i~fs~~n~~ 1033 (1487)
|..+++|++.. .+... ....|+-++++++.--.+. ...++.+++...||. ..+.|+++++.
T Consensus 71 G~~~VtA~v~~-~~~~~--~a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n---~~ytWsSs~~~ 144 (282)
T 1f00_I 71 GKSLVSARVSD-VAVDV--KAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN---GKYTWRSANPA 144 (282)
T ss_dssp EEECEEEEETT-CCCCE--ECCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTT---SCEEEEESCTT
T ss_pred EEEEEEEEECC-CCCCC--CCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCC---CEEEEECCCCC
T ss_conf 47999999778-76423--44551255012112321563065257668763311159999946996---15777426872
Q ss_pred EEEEE-CCCCEEEEEEEEEEEEEEEEEC
Q ss_conf 89999-1442799993553799999972
Q 000455 1034 IATIH-RSSGQLFAISPGNTTLIATVFG 1060 (1487)
Q Consensus 1034 va~V~-~~~G~Vt~~s~G~~~It~~~~~ 1060 (1487)
+++|| . +|.|+-...|..+|+++-+.
T Consensus 145 ~~sVd~~-~G~Vt~~~~GtvtITatsg~ 171 (282)
T 1f00_I 145 IASVDAS-SGQVTLKEKGTTTISVISSD 171 (282)
T ss_dssp TEEECTT-TCEEEECSSSCEEEEEEETT
T ss_pred EEEECCC-CCEEEECCCCEEEEEEECCC
T ss_conf 6997078-76699778855999999699
No 9
>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Probab=1.00 E-value=1 Score=40.88 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=43.2
Q ss_pred CCCEEEEECCCEEEEEECCCEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCE
Q ss_conf 850899617951599911807995156439999994138851325999996510
Q 000455 344 SSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPS 397 (1487)
Q Consensus 344 ~~~y~WsSsn~~VatV~~~Gvvta~~~G~~~I~a~d~~n~~~~~~~~V~V~~p~ 397 (1487)
.++|.|+++|++||+|+ +|++++...|.++|++.|..+.. .+++.|.|..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (814)
T 1f1s_A 27 KADYQYTLTNPSLGKIV-GGILYPNATGSTTVKISDKSGKI-IKEVPLSVTAST 78 (814)
T ss_dssp STTSEEEESSGGGEEEE-TTEEEECSCEEEEEEEECTTCCE-EEEEEEEEECCC
T ss_pred CCCEEEEECCCCEEEEE-CCEEEEECCCEEEEEEECCCCCE-EEEEEEECCCCC
T ss_conf 68637996488358972-76788604864899998689987-899874216778
No 10
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT; invasin, intimin, adhesion vaccination, bacterial immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Probab=1.00 E-value=1 Score=32.99 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=6.1
Q ss_pred EEEEEEEECCCCCEE
Q ss_conf 999999995899847
Q 000455 698 IRIAAVGISSSGEAF 712 (1487)
Q Consensus 698 ~~i~v~v~D~~g~~f 712 (1487)
..+.+.+-|.+|+.+
T Consensus 314 ~~vt~tv~D~~GNpv 328 (414)
T 3tkv_A 314 TELTFTMKDAYGNPV 328 (414)
T ss_dssp EEEEEECBBTTSCBC
T ss_pred EEEEEEEEECCCCCC
T ss_conf 899999993899997
Done!