Query 000455
Match_columns 1487
No_of_seqs 230 out of 275
Neff 6.7
Searched_HMMs 13730
Date Tue Mar 26 16:52:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000455.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_234-238//hhsearch_scop/000455hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f00i2 b.1.14.1 (I:753-841) I 98.4 4.2E-07 3E-11 63.0 7.6 58 322-383 20-78 (89)
2 d1f00i2 b.1.14.1 (I:753-841) I 97.2 0.00021 1.5E-08 43.7 4.5 50 120-171 36-85 (89)
3 d1cwva4 b.1.14.1 (A:796-886) I 92.4 0.19 1.4E-05 22.7 6.4 51 331-382 28-80 (91)
4 d1f1sa2 b.1.18.2 (A:171-248) H 76.1 1.2 8.8E-05 17.0 4.7 37 346-383 29-65 (78)
5 d1cwva3 b.1.14.1 (A:693-795) I 34.4 6.1 0.00045 12.0 6.2 66 696-769 25-90 (103)
6 d2di8a1 b.1.18.10 (A:8-105) Fi 11.5 24 0.0017 7.8 4.7 36 959-997 61-96 (98)
7 d2diaa1 b.1.18.10 (A:8-107) Fi 9.2 32 0.0023 6.9 4.7 33 960-995 64-96 (100)
8 d1aoha_ b.2.2.2 (A:) Cohesin d 8.0 38 0.0028 6.3 5.0 18 406-423 8-25 (143)
9 d2d7pa1 b.1.18.10 (A:8-106) Fi 7.6 41 0.003 6.1 3.4 15 620-634 68-82 (99)
10 d2vzsa3 b.1.4.1 (A:675-777) Ex 7.3 43 0.0031 5.9 9.7 94 1025-1129 4-102 (103)
No 1
>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}
Probab=98.42 E-value=4.2e-07 Score=63.02 Aligned_cols=58 Identities=38% Similarity=0.525 Sum_probs=49.6
Q ss_pred EECCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEC-CCEEEECCCCEEEEEEEECCCC
Q ss_conf 3176672367999992047788850899617951599911-8079951564399999941388
Q 000455 322 LPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKATVKVVSIFDS 383 (1487)
Q Consensus 322 lp~~~~~~q~~~L~a~gGsg~~~~~y~WsSsn~~VatV~~-~Gvvta~~~G~~~I~a~d~~n~ 383 (1487)
+|.....+..++|.++++.+ .|.|+|+|+.||+|+. .|++++++.|+++|+|.+..+.
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~----~~twsSsd~~VAtVd~~~G~vta~~~G~a~Itat~~~g~ 78 (89)
T d1f00i2 20 LPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQ 78 (89)
T ss_dssp CCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEECSSSCEEEEEEETTTE
T ss_pred CCCEEEEEEEEEEEECCCCC----CEEEEECCCCEEEEECCCCEEEEEEEEEEEEEEEECCCC
T ss_conf 77356620589987736897----289997999999997898899996608999999979999
No 2
>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}
Probab=97.16 E-value=0.00021 Score=43.75 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCCCCEEEEEECCCEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEE
Q ss_conf 7999449999287459996672279999544079999956447874318999
Q 000455 120 LPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLN 171 (1487)
Q Consensus 120 lP~~~y~w~~~n~~Va~vd~~~g~vtA~~~G~t~V~v~d~~~~~~~~~~tI~ 171 (1487)
-.+..|.|+++|+.||+||++.|+++|+..|++.|++.... +...+++|.
T Consensus 36 ~~~~~~twsSsd~~VAtVd~~~G~vta~~~G~a~Itat~~~--g~~at~tvt 85 (89)
T d1f00i2 36 GGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSD--NQTATYTIA 85 (89)
T ss_dssp STTSCEEEEESCTTTEEECTTTCEEEECSSSCEEEEEEETT--TEEEEEEEC
T ss_pred CCCCCEEEEECCCCEEEEECCCCEEEEEEEEEEEEEEEECC--CCEEEEEEE
T ss_conf 68972899979999999978988999966089999999799--999999998
No 3
>d1cwva4 b.1.14.1 (A:796-886) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=92.41 E-value=0.19 Score=22.68 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=39.2
Q ss_pred EEEEEEECCCCCCCCCEEEEECCCEEEEEECCCEEEECC--CCEEEEEEEECCC
Q ss_conf 799999204778885089961795159991180799515--6439999994138
Q 000455 331 EVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK--PGKATVKVVSIFD 382 (1487)
Q Consensus 331 ~~~L~a~gGsg~~~~~y~WsSsn~~VatV~~~Gvvta~~--~G~~~I~a~d~~n 382 (1487)
.|||...+..+ --++|.|+|+.+.-++|+..|+|+... .++.+|+|.-...
T Consensus 28 ~Fql~~~~~~~-~ns~Y~wsSs~~~wvsVd~~G~Vtf~~~pts~VTITA~pk~g 80 (91)
T d1cwva4 28 TFQLQMDNDVA-NNTQYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKSKKF 80 (91)
T ss_dssp EEEEEETTCGG-GGGGEEEEESSTTTEEECTTCEEEECSCCSSCEEEEEEESSS
T ss_pred EEEEECCCCCC-CCCCCEEECCCCCEEEECCCCEEEECCCCCCCEEEEEEECCC
T ss_conf 99996189756-542312751898568976871799803898857999876479
No 4
>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]}
Probab=76.13 E-value=1.2 Score=16.99 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=27.7
Q ss_pred CEEEEECCCEEEEEECCCEEEECCCCEEEEEEEECCCC
Q ss_conf 08996179515999118079951564399999941388
Q 000455 346 DYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDS 383 (1487)
Q Consensus 346 ~y~WsSsn~~VatV~~~Gvvta~~~G~~~I~a~d~~n~ 383 (1487)
+|.++..|++|++| .+|++.....|.++|.+.|..+.
T Consensus 29 DY~Y~iens~i~~V-~nGil~Pl~eG~T~vkVsdkdGk 65 (78)
T d1f1sa2 29 DYQYTLTNPSLGKI-VGGILYPNATGSTTVKISDKSGK 65 (78)
T ss_dssp TSEEEESSGGGEEE-ETTEEEECSCEEEEEEEECTTCC
T ss_pred CEEEEECCCCEEEE-ECCEEEECCCCCEEEEEECCCCC
T ss_conf 15889607862466-34257773368458998635896
No 5
>d1cwva3 b.1.14.1 (A:693-795) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=34.42 E-value=6.1 Score=11.98 Aligned_cols=66 Identities=9% Similarity=-0.038 Sum_probs=29.4
Q ss_pred CEEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEEE
Q ss_conf 76999999995899847612884699996288852596135576557886327999763000499999996665
Q 000455 696 QTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFC 769 (1487)
Q Consensus 696 r~~~i~v~v~D~~g~~f~n~ssL~i~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~ 769 (1487)
..-.|++.+.|.+|+...+ +...|..++... ..+.. .. +..|....-.-..+.|.++|+|++.|..
T Consensus 25 ~~~tlt~tv~D~~GNpv~g---~~v~~~~~~~~~-~~~s~--~t--d~~G~ytatltst~aG~~tVta~v~g~~ 90 (103)
T d1cwva3 25 MSSTLSFVPVDKNGHFISG---MQGLSFTQNGVP-VSISP--IT--EQPDSYTATVVGNSVGDVTITPQVDTLI 90 (103)
T ss_dssp CCEEEEEECBCTTSCBCCS---CCSEEEEEEESC-CEECC--CE--ECSSCEEEEEECSSCEEEEEEEEETTEE
T ss_pred EEEEEEEEEECCCCCCCCC---CEEEEEECCCCC-CCCCE--EE--CCCCEEEEEEECCCCCEEEEEEEECCEE
T ss_conf 0799999999589999678---727899616775-42100--74--7999899999814650799999999998
No 6
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.51 E-value=24 Score=7.82 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEEEEEEEEEEEEEEECCCCCEEEEECEEEEEECCCE
Q ss_conf 999992777899999997148717875318999968984
Q 000455 959 FKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPR 997 (1487)
Q Consensus 959 ~~v~g~~~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL~ 997 (1487)
...++...|.-.|.+.+ .|+.|.-.|..+.|++|-|
T Consensus 61 v~y~P~~~G~y~i~V~~---~g~~I~gSPF~v~V~~~~~ 96 (98)
T d2di8a1 61 VSYFPTVPGVYIVSTKF---ADEHVPGSPFTVKISGEGR 96 (98)
T ss_dssp EEECCCSCSEEEEEEEE---SSCBCTTCSEEEEEECSSC
T ss_pred EEEEECCCCEEEEEEEE---CCEECCCCCEEEEECCCCC
T ss_conf 99997988409999999---9999999999989858674
No 7
>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.18 E-value=32 Score=6.86 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=12.7
Q ss_pred EEEEEEEEEEEEEEEEECCCCCEEEEECEEEEEECC
Q ss_conf 999927778999999971487178753189999689
Q 000455 960 KIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAP 995 (1487)
Q Consensus 960 ~v~g~~~G~ttL~as~~~~~G~~i~S~~~~I~VfpP 995 (1487)
..++...|.-+|.+.+ .|+.+...|..+.|.|+
T Consensus 64 ~y~P~~~G~h~i~V~~---~g~~V~gSPf~v~V~~~ 96 (100)
T d2diaa1 64 TYVPLTAGMYTLTMKY---GGELVPHFPARVKVEPA 96 (100)
T ss_dssp EEECSSCEEEEEEEEE---TTEECTTCSEEEEEECC
T ss_pred EEEECCCCCEEEEEEE---CCEECCCCCEEEEEECC
T ss_conf 9996757549999999---99999998999799688
No 8
>d1aoha_ b.2.2.2 (A:) Cohesin domain {Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]}
Probab=8.02 E-value=38 Score=6.30 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=7.5
Q ss_pred CEEEEECCEEEEEEEEEE
Q ss_conf 379970979999999980
Q 000455 406 PVETVVGSHLQAAVTMKT 423 (1487)
Q Consensus 406 ~~E~~vg~~l~l~v~~~~ 423 (1487)
.++...|+.+.++|.+.+
T Consensus 8 ~v~~~~G~tv~V~V~~~~ 25 (143)
T d1aoha_ 8 TVNAKPGDTVRIPVRFSG 25 (143)
T ss_dssp EEEECTTCEEEEEEEEES
T ss_pred CEEECCCCEEEEEEEEEC
T ss_conf 288659998999999964
No 9
>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.58 E-value=41 Score=6.08 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=5.8
Q ss_pred CCCEEEEEEEECCCC
Q ss_conf 343799999995426
Q 000455 620 TLGTFELVFKRGNLV 634 (1487)
Q Consensus 620 ~lG~~~l~~~vgN~~ 634 (1487)
+.|...|.+.+.+++
T Consensus 68 ~~G~~~i~V~~~g~~ 82 (99)
T d2d7pa1 68 ENGVHSIDVKFNGAH 82 (99)
T ss_dssp SCEEEEEEEEESSCB
T ss_pred CCCCEEEEEEECCEE
T ss_conf 787289999999999
No 10
>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=7.33 E-value=43 Score=5.94 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEECEEEEEEEEECCEEEECCEEEEEEEEC-
Q ss_conf 9995627508999914427999935537999999727845999761249997213589981042155373884999801-
Q 000455 1025 VDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP- 1103 (1487)
Q Consensus 1025 i~fs~~n~~va~V~~~~G~Vt~~s~G~~~It~~~~~~~g~~v~~~~~~V~V~~~~~i~I~a~~~rl~~g~~~pv~~~g~- 1103 (1487)
+.|.-.+..|-.|+. +....+..++.+++.+.+|+...+.+..+......+.....-......+.. ++|-+-+
T Consensus 4 Vq~n~~~~~V~VVN~-----t~~~~~~~~v~a~v~Dl~Gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~FlrL~ 77 (103)
T d2vzsa3 4 IQYSHDNRSVVVINQ-----TSNAVSGLTATTKLYNLDGTEKYSNTKTGLSVGALGAKATAVTVPAVSGLS-TTYLAKNV 77 (103)
T ss_dssp EEECTTTCEEEEEEC-----SSSCEEEEEEEEEEEETTSCEEEEEEEEEEEECSTTEEEEEEECCCCSSCC-SEEEEEEE
T ss_pred EEECCCCCEEEEEEC-----CCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCC-CEEEEEEE
T ss_conf 998279998999979-----873359869999999599999789989978738884178998144236778-15999999
Q ss_pred ----CCCEEEECCEEEEEEEEECCCCEEEE
Q ss_conf ----89612102314799999868611578
Q 000455 1104 ----EGDVFSFYELCRNYNWTIEDEKILGF 1129 (1487)
Q Consensus 1104 ----~g~~fsf~~~~l~~~W~~s~~~vl~~ 1129 (1487)
+|...| -+|.|-++..+.+++
T Consensus 78 L~d~~g~vlS-----rN~YWl~~~~d~l~W 102 (103)
T d2vzsa3 78 LTDSSGKEVS-----RNVYWLSTKADTLNW 102 (103)
T ss_dssp EECTTCCEEE-----EEEEEEESSCCEECG
T ss_pred EECCCCCEEE-----EEEEECCCCCCCCCC
T ss_conf 9779998987-----667880698763344
Done!