Your job contains 1 sequence.
>000457
MRLKELALDLENQRQIQKRDPEGKKVLSDMENCSERTDGVSASDDKENLDEMLAASIAAE
ANESSSKSASKSATANLLEEDGDEDEEIILPTMGGNVDPAVFAALPPSMQHQLLVRNNDA
KGKNVLSDDLGQADTVGISPESHDVVSKSRDHKKLDEMLAASIAAEEDGSLSNNASASAA
SLPLEEEDGDEDEEMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVK
KAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTG
DKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRK
SFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLT
LNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCDD
DDDIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLE
EGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPN
YALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVG
GINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCS
DAPCEDSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEV
EMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTG
IFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQ
MFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM
QDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESP
DPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQN
MKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRK
KRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAEMENPERL
TPAGGGRNANNVFRGNRRGKGQRVGRGRGRRRLCAEQSETSSSDDIGSDDTQEYYSEKFE
GQQEVRRSTRSRKPVDYNVDDPEIADVGKILSNKESSNEEEAKQDSVHGVTGEASADYSR
KKQHRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHD
ESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTD
TFDTEPNPVVQNATSTDSARNDAGRASRGSLTAMTFLRRKRRRS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000457
(1484 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 846 2.1e-114 4
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 434 5.0e-42 3
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 424 6.2e-41 2
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 408 6.0e-39 3
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 419 1.1e-38 3
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 408 4.1e-38 3
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 399 5.8e-36 4
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 414 1.4e-35 2
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 423 2.4e-35 3
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 414 3.9e-35 2
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 402 1.7e-34 4
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 412 1.7e-34 1
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 412 1.7e-34 1
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 402 8.9e-34 4
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 411 4.6e-33 3
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 381 1.3e-31 2
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 363 1.6e-30 3
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 363 1.6e-30 3
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 387 1.8e-30 2
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 282 1.5e-20 1
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 277 1.6e-20 1
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 246 2.0e-19 1
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 271 2.3e-19 1
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 236 2.3e-18 1
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 261 2.7e-18 1
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 269 3.9e-18 2
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 259 1.4e-17 2
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 238 6.2e-17 2
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 260 1.5e-16 2
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 236 1.9e-15 2
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 225 2.5e-15 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 224 3.2e-15 1
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 235 9.8e-15 2
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 219 1.2e-14 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 218 1.6e-14 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 217 2.0e-14 1
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 217 2.0e-14 1
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 217 2.0e-14 2
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 217 3.8e-14 2
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 210 1.3e-13 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 208 2.2e-13 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 206 3.6e-13 1
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 201 1.3e-12 1
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 203 2.2e-12 1
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 197 3.4e-12 1
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 203 3.6e-12 1
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 212 5.0e-12 2
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 196 5.3e-12 1
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 193 1.1e-11 1
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 191 2.4e-11 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 186 6.8e-11 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 184 1.0e-10 1
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 194 9.8e-10 2
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 175 1.5e-09 1
TAIR|locus:2098443 - symbol:AT3G28770 "AT3G28770" species... 139 2.3e-09 2
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 181 2.8e-09 2
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 188 3.3e-09 3
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 188 3.3e-09 3
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 172 6.9e-09 2
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 173 2.1e-08 2
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 164 2.2e-08 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 162 2.2e-08 1
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 164 5.4e-08 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 159 1.9e-07 1
CGD|CAL0001028 - symbol:orf19.652 species:5476 "Candida a... 115 6.3e-07 2
FB|FBgn0036203 - symbol:Muc68D "Mucin 68D" species:7227 "... 151 1.3e-06 2
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 151 1.7e-06 2
GENEDB_PFALCIPARUM|PF10_0080 - symbol:PF10_0080 "endonucl... 145 2.1e-06 1
UNIPROTKB|Q8IJW1 - symbol:PF10_0080 "Endonuclease, putati... 145 2.1e-06 1
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 148 2.8e-06 1
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 151 3.4e-06 2
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 150 5.4e-06 2
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 146 5.6e-06 1
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 156 6.0e-06 3
UNIPROTKB|G4MVT4 - symbol:MGG_01800 "Flap structure-speci... 146 6.4e-06 1
POMBASE|SPAC12G12.16c - symbol:SPAC12G12.16c "Fen1 family... 146 6.7e-06 2
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 152 8.2e-06 3
DICTYBASE|DDB_G0290503 - symbol:DDB_G0290503 species:4468... 122 1.2e-05 2
DICTYBASE|DDB_G0289719 - symbol:DDB_G0289719 "SFRS2-inter... 97 1.3e-05 4
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 140 1.7e-05 1
SGD|S000001800 - symbol:SRP40 "Nucleolar serine-rich prot... 137 1.7e-05 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 154 2.2e-05 2
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 134 2.8e-05 2
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 146 3.0e-05 2
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 147 5.0e-05 2
TAIR|locus:504955937 - symbol:AT2G22795 "AT2G22795" speci... 134 9.1e-05 1
ASPGD|ASPL0000035217 - symbol:AN3186 species:162425 "Emer... 132 0.00017 1
UNIPROTKB|Q9NZW4 - symbol:DSPP "Dentin sialophosphoprotei... 119 0.00077 2
DICTYBASE|DDB_G0288691 - symbol:hook "hook family protein... 112 0.00099 3
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 846 (302.9 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 186/339 (54%), Positives = 236/339 (69%)
Query: 744 LSASAKGDEHLT-HEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSI 802
+SA DE +T D+K+N + E+S++ DK++ +++ T + D S
Sbjct: 790 VSAMPIADEEITGFLDEKDNADGESSIMMDDKRDYSRRKIQSLVTE--------SRDPSR 841
Query: 803 PLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEE 862
+V+ S ++DTD + + EE + + + +T F K + E +E +EEE
Sbjct: 842 NVVR-SRIGILHDTDSQNERREENNSNEHTFNIDSSTD-FEEKGVP---VEFSEANIEEE 896
Query: 863 MQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL 922
+++LD E++ LGDEQ+KLERNAESVSSEMFAECQELLQ+FG+PYIIAPMEAEAQCA+ME
Sbjct: 897 IRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQ 956
Query: 923 ANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLG 982
+NLVDG+VTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIEK+LGL+R+K+IRMA+LLG
Sbjct: 957 SNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLG 1016
Query: 983 SDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGAXXXXXXXX 1042
SDYTEGISGIGIVNAIEVV AFPEEDGL KFREW+ESPDPTILGK D +TG+
Sbjct: 1017 SDYTEGISGIGIVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSA 1076
Query: 1043 XXXXXVNYAKNSVGGVSEFD-ESISQFDEDKQSAEYSQN 1080
K + G S D E I Q D Q + S+N
Sbjct: 1077 SVDN-----KGIISGASTDDTEEIKQIFMD-QHRKVSKN 1109
Score = 703 (252.5 bits), Expect = 6.9e-92, Sum P(4) = 6.9e-92
Identities = 251/786 (31%), Positives = 372/786 (47%)
Query: 118 NDAKGKNVLSDDLGQADTVGISPESHDVVSKSRDHKKLDEMLAASIAAEEDGXXXXXXXX 177
+D KGK VL D D + + V K +KLDEMLAAS+AAEE+
Sbjct: 195 DDPKGKGVLLD----GDDLDNLVQDSSVQGKDYQ-EKLDEMLAASLAAEEERNFTSKAST 249
Query: 178 XXXXXPLXXXXXXXXXX---MILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQ 234
P ++LP M GN+DPAVLA+LPPSMQLDLL QMRE+LMAENRQ
Sbjct: 250 SAAAIPSEEDEEEDSDGDEEILLPVMDGNIDPAVLASLPPSMQLDLLAQMREKLMAENRQ 309
Query: 235 KYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIF 294
KYQKVKKAPEKFSELQI+AYLKTVAFRREI+EVQ++A GR V GVQTSRIASEANREFIF
Sbjct: 310 KYQKVKKAPEKFSELQIEAYLKTVAFRREINEVQRSAGGRAVGGVQTSRIASEANREFIF 369
Query: 295 SSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLG 354
SSSF GDK+VL S+R EG+ DE Q+ S+ + S N + + KS+ ++ + K
Sbjct: 370 SSSFAGDKEVLASAR-EGRNDENQKKTSQQSLPVSVKNASPLKKSD-ATIELDRDEPK-N 426
Query: 355 PEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITG 414
P+E+ +E Y+DERGR R+ R MGI+MTRD+QRNL +MKE +ER ++
Sbjct: 427 PDEN-------IEVYIDERGRFRIRN-RHMGIQMTRDIQRNLHLMKE--KERTASGSMAK 476
Query: 415 AGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKD-N 473
+ E ++ EK +D ++ S+ + S+++ + KD N
Sbjct: 477 NDETFSAWENFPTEDQFLEKSPVEKDVVDLEIQNDDSM-LHPPSSIEISFDHDGGGKDLN 535
Query: 474 SENNCXXXXXIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAG- 532
E++ + N P+ +S SDSDWEE E+ S +AN
Sbjct: 536 DEDDMFLQLAAGGPVTISST---ENDPKEDTSPWASDSDWEEVPVEQNTSVSKLEANLSN 592
Query: 533 --INPPLNLEEGGISDE-------SEVEWEEGPSCAPKSSLSFPAESEKTV--SNIE--- 578
I +++ EG +E + VE + + K L A+ ++ + S +E
Sbjct: 593 QHIPKDISIAEGVAWEEYSCKNANNSVE-NDTVTKITKGYLEEEADLQEAIKKSLLELHD 651
Query: 579 -EEANLQEAIRRSLLDVCIEKPNYALSEHNKC--ENLGENACDGTWLYDRENNMDDPNFL 635
E ++ E + +++ ++KP SE + C E +GE + E +D+ L
Sbjct: 652 KESGDVLEENQSVRVNLVVDKP----SEDSLCSRETVGEA--------EEERFLDEITIL 699
Query: 636 GES--VSQQ-HESICEYVDGLGKLDTVGGINNSEVIGSLGREL--KLYEPRNSDEKEMLI 690
S +S+Q + S+ DG + G + S ++ + KL + ++ E +
Sbjct: 700 KTSGAISEQSNTSVAGNADGQKGITKQFGTHPSSGSNNVSHAVSNKLSKVKSVISPEKAL 759
Query: 691 NKPFEKDNSYFEQSRQGANDGAND--GRSL-CSDAPCEDSGTTMELTEVQLVKGRCLSAS 747
N ++ ++Q +G+ G S+ S P D T L E G +S
Sbjct: 760 NVA-SQNRMLSTMAKQHNEEGSESFGGESVKVSAMPIADEEITGFLDEKDNADGE---SS 815
Query: 748 AKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKT 807
D+ + +K S P + + HD ++ R S+ + +
Sbjct: 816 IMMDDKRDYSRRKIQSLVTESRDPSRNVVRSRIGILHDTDSQNERREENNSNEHTFNIDS 875
Query: 808 SGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILE--EEMQI 865
S + +E A L + G K N + ++E E E +QI
Sbjct: 876 STDFEEKGVPVEFSEANIEEEIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQI 935
Query: 866 LDHEYM 871
Y+
Sbjct: 936 FGIPYI 941
Score = 207 (77.9 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 52/113 (46%), Positives = 65/113 (57%)
Query: 1072 KQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDA 1131
K++ E + K + + TQLR+EAFY+FNERFAKIRSKRI KAVKGI G S + D
Sbjct: 1160 KKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKIRSKRINKAVKGIGGGLSSDVADHT 1219
Query: 1132 GQEVSKSRKKRKNNGLEN-GNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRER 1183
QE + R K+K E NN S K A E V + +EK S S+ R R
Sbjct: 1220 LQEGPRKRNKKKVAPHETEDNNTSDKDSPIANEKVKNKRKRLEKPSSSRGRGR 1272
Score = 130 (50.8 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 32/68 (47%), Positives = 38/68 (55%)
Query: 1327 DDPSIDKDYIERGGGFCIDD-QEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETR 1385
D PS +DYI+ GGGFC D+ EIG D LE + T DY +GGGFC DE ET
Sbjct: 1368 DCPS--EDYIQTGGGFCADEADEIG--------DAHLEDKATDDYRVIGGGFCVDEDETA 1417
Query: 1386 EDQVAAKD 1393
E+ D
Sbjct: 1418 EENTMDDD 1425
Score = 116 (45.9 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 33/105 (31%), Positives = 41/105 (39%)
Query: 18 KRDPEGKKVLSDMENCSE--RTDGVSASDDKENLDEMLXXXXXXXXXXXXXXXXXXXXXX 75
K DP+GK VL D ++ + V D +E LDEML
Sbjct: 194 KDDPKGKGVLLDGDDLDNLVQDSSVQGKDYQEKLDEMLAASLAAEEERNFTSKASTSAAA 253
Query: 76 XXXXXXXXXXXXXXX----PTMGGNVDPAVFAALPPSMQHQLLVR 116
P M GN+DPAV A+LPPSMQ LL +
Sbjct: 254 IPSEEDEEEDSDGDEEILLPVMDGNIDPAVLASLPPSMQLDLLAQ 298
Score = 81 (33.6 bits), Expect = 2.9e-109, Sum P(4) = 2.9e-109
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 1265 VRRSTRSRKPVDYNVDDPEIADVGKILXXXXXXXXXXAKQDSVHGVTGEASADYSRKKQH 1324
+++STRSR PV Y+ + + D + + + G + S D S
Sbjct: 1314 LQKSTRSRNPVMYSAKEDDELDESRSNEGSPSENFEEVDEGRI-G--NDDSVDASIN--- 1367
Query: 1325 RADDPSIDKDYIERGGGFCIDD-QEIG 1350
D PS +DYI+ GGGFC D+ EIG
Sbjct: 1368 --DCPS--EDYIQTGGGFCADEADEIG 1390
Score = 69 (29.3 bits), Expect = 5.3e-108, Sum P(4) = 5.3e-108
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 1327 DDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMG 1374
+D + D DY GGGFC+D+ E + + D L+ E +++ K G
Sbjct: 1395 EDKATD-DYRVIGGGFCVDEDETAEENTMDDDAEILKME-SEEQRKKG 1440
Score = 62 (26.9 bits), Expect = 9.7e-109, Sum P(4) = 9.7e-109
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 1 MRLKELALDLENQRQIQK-RDPEGKKVLSDMENCSERT----DGVSASD-DKENLDEM 52
+RLKE A D++NQR Q D K+V SD + R D V AS +E LDE+
Sbjct: 117 IRLKEQAKDIKNQRLKQDDSDRVKKRVSSDSVEDNLRVPVEEDDVGASFFQEEKLDEV 174
Score = 55 (24.4 bits), Expect = 5.3e-108, Sum P(4) = 5.3e-108
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 117 NNDAKGKNVLSDDLGQADTVGISPESHDVVSKSRDHKKLDEMLAASIAAE 166
++D K V SD + D + + E DV + +KLDE+ AS+ E
Sbjct: 135 DSDRVKKRVSSDSV--EDNLRVPVEEDDVGASFFQEEKLDEVSQASLVGE 182
Score = 49 (22.3 bits), Expect = 4.6e-21, Sum P(4) = 4.6e-21
Identities = 67/340 (19%), Positives = 123/340 (36%)
Query: 571 EKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMD 630
+K VS+ E NL+ + + + L E ++ +GE D +E+ D
Sbjct: 140 KKRVSSDSVEDNLRVPVEEDDVGASFFQEE-KLDEVSQASLVGETGVDDVV---KESVKD 195
Query: 631 DPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGS-LGRELKLYEPRNSDEKEML 689
DP G+ V + + D L + +V G + E + L L E RN K
Sbjct: 196 DPK--GKGVLLDGDDL----DNLVQDSSVQGKDYQEKLDEMLAASLAAEEERNFTSKAST 249
Query: 690 I------NKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQLVKGRC 743
+ E+D+ E+ DG D L S P ++ E + + R
Sbjct: 250 SAAAIPSEEDEEEDSDGDEEILLPVMDGNIDPAVLASLPPSMQLDLLAQMREKLMAENRQ 309
Query: 744 LSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEI-EVEMKHDFTAEPSCRTVG-TSDTS 801
K +K + + E + + EI EV+ A +T S+ +
Sbjct: 310 KYQKVK-----KAPEKFSELQIEAYLKTVAFRREINEVQRSAGGRAVGGVQTSRIASEAN 364
Query: 802 IPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEE 861
+ +S A D ++ + E R + K S+Q+ + A ++AT ++ +
Sbjct: 365 REFIFSSSFAG--DKEVLASAREGRNDENQKKTSQQSLPVSVKNASPLKKSDATIELDRD 422
Query: 862 EMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQM 901
E + D DE+ + + +M + Q L +
Sbjct: 423 EPKNPDENIEVYIDERGRFRIRNRHMGIQMTRDIQRNLHL 462
Score = 44 (20.5 bits), Expect = 8.2e-98, Sum P(5) = 8.2e-98
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 1074 SAEYSQNMKKIFMDKHTQL 1092
S + ++ +K+IFMD+H ++
Sbjct: 1088 STDDTEEIKQIFMDQHRKV 1106
Score = 43 (20.2 bits), Expect = 8.2e-98, Sum P(5) = 8.2e-98
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 1131 AGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLE 1187
A ++V RK+ + G R+QK + + SS + KV+E
Sbjct: 1250 ANEKVKNKRKRLEKPSSSRGRGRAQKRGRGRGRVQKDLLELSDGSSDDDDDDDKVVE 1306
Score = 38 (18.4 bits), Expect = 3.2e-106, Sum P(4) = 3.2e-106
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 546 DESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQEAIRRSLL 592
D+S+ + S + + +L P E + ++ +E L E + SL+
Sbjct: 134 DDSDRVKKRVSSDSVEDNLRVPVEEDDVGASFFQEEKLDEVSQASLV 180
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 434 (157.8 bits), Expect = 5.0e-42, Sum P(3) = 5.0e-42
Identities = 95/202 (47%), Positives = 125/202 (61%)
Query: 817 DIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDE 876
DI ++ + + L DS+ +K EN + + + LEE L E L +
Sbjct: 642 DIVTQNLLNESDEVQLADSQNAEKEDNSKDAENEWQDISLEELEELENDLSAEQEMLQSQ 701
Query: 877 QKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDV 936
+++ ER A SV+ +MF E QELL++FG+PYI APMEAEAQCA ++L + G +TDDSDV
Sbjct: 702 KQQQERVATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDV 761
Query: 937 FLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVN 996
+LFGAR VYKN F KYVE Y D + LGL R KLI +A LLGSDYTEGI +G V
Sbjct: 762 WLFGARHVYKNFFSRNKYVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVT 821
Query: 997 AIEVVNAFPEE--DGLSKFREW 1016
A+E++N FP + L KF EW
Sbjct: 822 AMEILNEFPGHGLEPLLKFAEW 843
Score = 105 (42.0 bits), Expect = 5.0e-42, Sum P(3) = 5.0e-42
Identities = 80/400 (20%), Positives = 152/400 (38%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
++D LPP ++ ++L M+E L NR ++ + + FS+ Q++ LK R+
Sbjct: 189 DIDSEDFNKLPPEVKHEILTDMKE-LTKRNRTLFEAMPEDSNDFSQYQLRGLLKKSHLRQ 247
Query: 263 EIDEVQKAA----AGR---------G-VAGVQTSRIASEANREFIFSSSFTGDKQVLTSS 308
I+ V+K +G+ G V +++ RI SE + +I F + S
Sbjct: 248 CIENVEKELNQQHSGQIRTQYENEGGFVKEMESRRIISEDSSHYILIKGFQAKEATSKDS 307
Query: 309 RV-EGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVE 367
EG E+ ++ + +++S N I + N +T P R A
Sbjct: 308 EATEGPSSERSEL---NKINESPANAKLITSDKLQAEKDDNVIT--APPSPRTLLAIQA- 361
Query: 368 TYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTS 427
++ L + +TR + + Q N + T
Sbjct: 362 AMVESSSEEELGGEDKEQLNLTRSVMEEGSVSPRTLQAIQQALNDDDEKEEVVTVRTDRV 421
Query: 428 KAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAH 487
+ S+ ++F+ +S D+ ++ + ++ +K+ L+S I +S N F
Sbjct: 422 QTERSKAKEFLLSSSDEEDQ-IPEVKEDKE-ILRSTI--------HSSNQTIIQDIEFEQ 471
Query: 488 LAA--GKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLE-EGGI 544
GK + P +S+S K S DD G ++ E +G
Sbjct: 472 KGQELGKSHVTPEG----TSMSTD-----------KNYSCVDDNGKG-KEVVDTEVDGSK 515
Query: 545 SDESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQ 584
D + +E ++ PSC+P + P +T + E NL+
Sbjct: 516 IDSTYLEDKDKPSCSPSQASIGPLIHGETAEFSKTEENLK 555
Score = 49 (22.3 bits), Expect = 5.0e-42, Sum P(3) = 5.0e-42
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 1380 DESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKE 1428
+E++ + A + + GES S C D V ++G G S+S++
Sbjct: 973 EEADEISEATAVMEKEMKGESTSGCSDHQAMV-TEIGSGKKRRHSDSRK 1020
Score = 48 (22.0 bits), Expect = 4.2e-36, Sum P(3) = 4.2e-36
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 96 NVDPAVFAALPPSMQHQLLVRNNDAKGKN-VL-------SDDLGQADTVGISPESH 143
++D F LPP ++H++L + +N L S+D Q G+ +SH
Sbjct: 189 DIDSEDFNKLPPEVKHEILTDMKELTKRNRTLFEAMPEDSNDFSQYQLRGLLKKSH 244
Score = 48 (22.0 bits), Expect = 4.2e-36, Sum P(3) = 4.2e-36
Identities = 125/608 (20%), Positives = 229/608 (37%)
Query: 224 MREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQT-S 282
++ Q +A+ R + + K +E ++ +LK A ++ A G+ + +
Sbjct: 83 LKRQTLAKRRHRKELAVIDSRKTAEKLLKTFLKRQA-------IKAALTGKSNEVYPSIT 135
Query: 283 RIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSA-NNGASIDKSNF 341
++ E + S D++ SS E +K+ + ++ + + + N +ID
Sbjct: 136 QVRREEIDDMYVLPSIEDDEK--NSSEEEEEKEWEIRMTQKKLLQEQLFENPHAID---I 190
Query: 342 SSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKE 401
S D KL PE + D E L +R R + ++ R L
Sbjct: 191 DSED----FNKLPPEVKHEILTDMKE--LTKRNRTLFEAMPEDSNDFSQYQLRGLLKKSH 244
Query: 402 IEQERPNGN---NITGAGSMLTL--NETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNK 456
+ Q N N +G + T NE G K + E R+ I S D ++ + + K
Sbjct: 245 LRQCIENVEKELNQQHSGQIRTQYENEGGFVKEM--ESRRII--SEDSSHYILIKGFQAK 300
Query: 457 QSTLKSGISLELSFKDNSE----NNCXXXXXIFAH--LAAGKP---VIFPNSPRAHSSIS 507
++T K + E + SE N + L A K + P SPR +I
Sbjct: 301 EATSKDSEATEGPSSERSELNKINESPANAKLITSDKLQAEKDDNVITAPPSPRTLLAIQ 360
Query: 508 V----SDSDWEEGTTERKGSSLSDDA-NAGINPPLNLE--EGGISDESEVEWEEGPSCAP 560
S S+ E G +++ +L+ G P L+ + ++D+ E E E
Sbjct: 361 AAMVESSSEEELGGEDKEQLNLTRSVMEEGSVSPRTLQAIQQALNDDDEKE-EVVTVRTD 419
Query: 561 KSSLSFPAESEKTVSNIEEEANLQEAIR-RSLLDVCIEKPNYALSE----HNKCENLGEN 615
+ E +S+ +EE + E + +L I N + + K + LG++
Sbjct: 420 RVQTERSKAKEFLLSSSDEEDQIPEVKEDKEILRSTIHSSNQTIIQDIEFEQKGQELGKS 479
Query: 616 AC--DGTWLY-DRENNMDDPNFLGESVSQQHESICEYVDG--LGKLDTVGGINNSEVIGS 670
+GT + D+ + D N G+ V E +D L D + IG
Sbjct: 480 HVTPEGTSMSTDKNYSCVDDNGKGKEVVDT-EVDGSKIDSTYLEDKDKPSCSPSQASIGP 538
Query: 671 L--GRELKLYEPRNSDEKEMLINKPFEK-DNSYFEQSRQG----ANDGANDGRSLCSDAP 723
L G + + + + +I + + +N+ FE ++ A +G + R S +
Sbjct: 539 LIHGETAEFSKTEENLKVCKIIEEVHSQTENNVFEVQKETEILPATEGPKEEREGASQS- 597
Query: 724 CEDSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAE-TSVLPGDKKNEI-EVE 781
EDS + EV V S + DE L + + E + ++ + NE EV+
Sbjct: 598 -EDSDSDGSFIEVDTVISNEDEFSTECDERLGDKTALSEMEEDGRDIVTQNLLNESDEVQ 656
Query: 782 MKHDFTAE 789
+ AE
Sbjct: 657 LADSQNAE 664
Score = 41 (19.5 bits), Expect = 3.4e-41, Sum P(3) = 3.4e-41
Identities = 21/91 (23%), Positives = 44/91 (48%)
Query: 1107 IRSKRIK-KAVKGITGSQSLLLMDDAGQEV--SKSRKKRKNNGLENGNNRSQKAPKKAEE 1163
+ K +K ++ G + Q+++ +G++ S SRK+ G GN ++ ++
Sbjct: 984 VMEKEMKGESTSGCSDHQAMVTEIGSGKKRRHSDSRKEHLFGGGFVGNLHLSES--SSDS 1041
Query: 1164 SVSGAQN-NMEKSSQSQSRERKVLEKFVLAE 1193
S ++N N++KS + RK+ K A+
Sbjct: 1042 SAEESENRNLDKS-----KRRKIASKAETAD 1067
Score = 39 (18.8 bits), Expect = 5.5e-41, Sum P(3) = 5.5e-41
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 1116 VKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKS 1175
+K + Q+ L +D + ++ K+ L + ++ K+ + +S A MEK
Sbjct: 929 IKQLNLQQTQLRIDSFFRLAQHEKQVIKSQRLRRAVSCLKRKEKEEADEISEATAVMEKE 988
Query: 1176 SQSQS 1180
+ +S
Sbjct: 989 MKGES 993
Score = 38 (18.4 bits), Expect = 4.6e-35, Sum P(3) = 4.6e-35
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 3 LKELALDLENQR-QIQKRDPEGKKVLSDMENCSERTDGVSASDDKEN 48
++E+ EN ++QK ++L E E +G S S+D ++
Sbjct: 560 IEEVHSQTENNVFEVQKET----EILPATEGPKEEREGASQSEDSDS 602
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 424 (154.3 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 105/256 (41%), Positives = 146/256 (57%)
Query: 764 EAETSVLPGDK-KNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKS 822
E +T + D+ E + E D TA G + L+ S + D+ +K
Sbjct: 667 EVDTVISNEDEFSTECD-ERLGDKTALSEMEEDGRDIVTQNLLNESDEVQLADSQNAEK- 724
Query: 823 AEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLER 882
E+ + D ++ Q+ + + + +N E E+ LE + L E L ++++ ER
Sbjct: 725 -EDNSKDA--ENEWQDISLQSALS-QNTFQEELEE-LEND---LSAEQEMLQSQKQQQER 776
Query: 883 NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 942
A SV+ +MF E QELL++FG+PYI APMEAEAQCA ++L + G +TDDSDV+LFGAR
Sbjct: 777 VATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGAR 836
Query: 943 SVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVN 1002
VYKN F KYVE Y D + LGL R KLI +A LLGSDYTEGI +G V A+E++N
Sbjct: 837 HVYKNFFSRNKYVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILN 896
Query: 1003 AFPEE--DGLSKFREW 1016
FP + L KF EW
Sbjct: 897 EFPGHGLEPLLKFAEW 912
Score = 103 (41.3 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 77/399 (19%), Positives = 151/399 (37%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
++D LPP ++ ++L M+E L NR ++ + + FS+ Q++ LK R+
Sbjct: 189 DIDSEDFNKLPPEVKHEILTDMKE-LTKRNRTLFEAMPEDSNDFSQYQLRGLLKKSHLRQ 247
Query: 263 EIDEVQKAA----AGR---------G-VAGVQTSRIASEANREFIFSSSFTGDKQVLTSS 308
I+ V+K +G+ G V +++ RI SE + +I F + S
Sbjct: 248 CIENVEKELNQQHSGQIRTQYENEGGFVKEMESRRIISEDSSHYILIKGFQAKEATSKDS 307
Query: 309 RV-EGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVE 367
EG E+ ++ + +++S N I + N +T P R A
Sbjct: 308 EATEGPSSERSEL---NKINESPANAKLITSDKLQAEKDDNVIT--APPSPRTLLAIQA- 361
Query: 368 TYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTS 427
++ L + +TR + + Q N + T
Sbjct: 362 AMVESSSEEELGGEDKEQLNLTRSVMEEGSVSPRTLQAIQQALNDDDEKEEVVTVRTDRV 421
Query: 428 KAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAH 487
+ S+ ++F+ +S D+ ++ + ++ +K+ L+S I +S N F
Sbjct: 422 QTERSKAKEFLLSSSDEEDQ-IPEVKEDKE-ILRSTI--------HSSNQTIIQDIEFEQ 471
Query: 488 LAA--GKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGIS 545
GK + P +S+S +D ++ KG + D G ++ +
Sbjct: 472 KGQELGKSHVTPEG----TSMS-TDKNYSCVDDNGKGKEVVDTEVDGSK----IDSTYLE 522
Query: 546 DESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQ 584
D+ + PSC+P + P +T + E NL+
Sbjct: 523 DKDVSLCIQKPSCSPSQASIGPLIHGETAEFSKTEENLK 561
Score = 49 (22.3 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 3 LKELALDLENQR-QIQKRDPEGKKVLSDMENCSERTDGVSASDDKENLDEML 53
++E+ EN ++QK ++L E E +G S S+D ++ DEML
Sbjct: 566 IEEVHSQTENNVFEVQKET----EILPATEGPKEEREGASQSEDSDS-DEML 612
Score = 48 (22.0 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 96 NVDPAVFAALPPSMQHQLLVRNNDAKGKN-VL-------SDDLGQADTVGISPESH 143
++D F LPP ++H++L + +N L S+D Q G+ +SH
Sbjct: 189 DIDSEDFNKLPPEVKHEILTDMKELTKRNRTLFEAMPEDSNDFSQYQLRGLLKKSH 244
Score = 41 (19.5 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 92/447 (20%), Positives = 170/447 (38%)
Query: 224 MREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQT-S 282
++ Q +A+ R + + K +E ++ +LK A ++ A G+ + +
Sbjct: 83 LKRQTLAKRRHRKELAVIDSRKTAEKLLKTFLKRQA-------IKAALTGKSNEVYPSIT 135
Query: 283 RIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSA-NNGASIDKSNF 341
++ E + S D++ SS E +K+ + ++ + + + N +ID
Sbjct: 136 QVRREEIDDMYVLPSIEDDEK--NSSEEEEEKEWEIRMTQKKLLQEQLFENPHAID---I 190
Query: 342 SSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKE 401
S D KL PE + D E L +R R + ++ R L
Sbjct: 191 DSED----FNKLPPEVKHEILTDMKE--LTKRNRTLFEAMPEDSNDFSQYQLRGLLKKSH 244
Query: 402 IEQERPNGN---NITGAGSMLTL--NETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNK 456
+ Q N N +G + T NE G K + E R+ I S D ++ + + K
Sbjct: 245 LRQCIENVEKELNQQHSGQIRTQYENEGGFVKEM--ESRRII--SEDSSHYILIKGFQAK 300
Query: 457 QSTLKSGISLELSFKDNSE----NNCXXXXXIFAH--LAAGKP---VIFPNSPRAHSSIS 507
++T K + E + SE N + L A K + P SPR +I
Sbjct: 301 EATSKDSEATEGPSSERSELNKINESPANAKLITSDKLQAEKDDNVITAPPSPRTLLAIQ 360
Query: 508 V----SDSDWEEGTTERKGSSLSDDA-NAGINPPLNLE--EGGISDESEVEWEEGPSCAP 560
S S+ E G +++ +L+ G P L+ + ++D+ E E E
Sbjct: 361 AAMVESSSEEELGGEDKEQLNLTRSVMEEGSVSPRTLQAIQQALNDDDEKE-EVVTVRTD 419
Query: 561 KSSLSFPAESEKTVSNIEEEANLQEAIR-RSLLDVCIEKPNYALSE----HNKCENLGEN 615
+ E +S+ +EE + E + +L I N + + K + LG++
Sbjct: 420 RVQTERSKAKEFLLSSSDEEDQIPEVKEDKEILRSTIHSSNQTIIQDIEFEQKGQELGKS 479
Query: 616 AC--DGTWLY-DRENNMDDPNFLGESV 639
+GT + D+ + D N G+ V
Sbjct: 480 HVTPEGTSMSTDKNYSCVDDNGKGKEV 506
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 408 (148.7 bits), Expect = 6.0e-39, Sum P(3) = 6.0e-39
Identities = 106/259 (40%), Positives = 147/259 (56%)
Query: 771 PGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTP-D 829
P + ++E E E F S V S+ + S + S D + +++ EE T D
Sbjct: 640 PMEMESE-ESESDGSFIEVQS--VVSNSELQTESSEASTHLSEKDAEEPRETLEEGTSRD 696
Query: 830 T--YLKDSKQNTGIFATKAIENVHAEAT----EKILEEEMQILDH----EYMYLGDEQKK 879
T L+DS + + + + AE + I EE+ L+ E L ++++
Sbjct: 697 TECLLQDSSDIEAMEGHREAD-IDAEDMPNEWQDINLEELDALESNLLAEQNSLKAQKQQ 755
Query: 880 LERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLF 939
+R A SV+ +MF E QELL++FG+PYI APMEAEAQCA ++L + G +TDDSD++LF
Sbjct: 756 QDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLF 815
Query: 940 GARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIE 999
GAR VYKN F+ K+VE Y D LGL R KLI +A LLGSDYTEGI +G V A+E
Sbjct: 816 GARHVYKNFFNKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAME 875
Query: 1000 VVNAFPEE--DGLSKFREW 1016
++N FP D L KF EW
Sbjct: 876 ILNEFPGRGLDPLLKFSEW 894
Score = 78 (32.5 bits), Expect = 6.0e-39, Sum P(3) = 6.0e-39
Identities = 82/387 (21%), Positives = 153/387 (39%)
Query: 231 ENRQKYQKVKKAPEKFSELQIQA-YLKTVAFRREIDE-VQKAAAGRGVAGVQTSRIASEA 288
EN QK + + + + Q + +LK V RR + E +G+ G + + SE+
Sbjct: 248 ENVQKEMNQQHSGQIQRQYQDEGGFLKEVESRRVVSEDTSHYILIKGIQGKKVMDVDSES 307
Query: 289 NREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVS--DSANNGASID-----KSNF 341
S + + + +V+ +++ + PS + +A G+S + +
Sbjct: 308 LPSSSNVHSVSSNLKSSPHEKVKPEREPEAAPPSPRTLLAIQAAMLGSSSEDEPESREGR 367
Query: 342 SSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLS-KVRAMGIRMTRDLQRNLEMMK 400
S ++++ T S ++ A ++ LD+ ++S + +M L LE +
Sbjct: 368 QSKERNSGATADAGSISPRTCAA-IQKALDDDNDEKVSGSSDDLAEKML--LGSGLEQEE 424
Query: 401 EIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIER--NKQS 458
++ G + + LT + T + V S G+S + +S S ++
Sbjct: 425 HADETAERGGGVPFDTAPLTPSVTEVKECVTS------GSSANGQTDSAHSFTTASHRCD 478
Query: 459 TLKSGISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTT 518
T K +SL + K+ S+ + AA P F +P +H S +S+ E T
Sbjct: 479 TPKETVSLARAVKEASQ--ISSECEVEGRPAALSPA-FIGTPSSHVSGVLSE---REPTL 532
Query: 519 ERKGSSLSDDANAGINP----------PLNLEEGGISDESEVEWEEGPSCAPK--SSLSF 566
+ D I+P PL + S+ E E G + APK S++
Sbjct: 533 APPTTRTHSDQGIDIHPEDPELQNGLYPLETKCNSSRLSSDDETEGGQNPAPKACSTVHV 592
Query: 567 PAESEKTV-----SNIEEEANLQEAIR 588
PAE+ + SN EE + QE I+
Sbjct: 593 PAEAMSNLENALPSNAEERGDFQETIQ 619
Score = 75 (31.5 bits), Expect = 6.0e-39, Sum P(3) = 6.0e-39
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
+++ ++LPP ++ ++L M+E R ++ + + FS+ Q++ LK +
Sbjct: 187 DIESEDFSSLPPEVKHEILTDMKE-FTKRRRTLFEAMPEESNDFSQYQLKGLLKKNYLNQ 245
Query: 263 EIDEVQK 269
I+ VQK
Sbjct: 246 HIENVQK 252
Score = 47 (21.6 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 752 EHLTHEDKKNNCEAET-SVLPGDKKNEIEVEMKHDFT 787
E H + + E+E S LP + K+EI +MK +FT
Sbjct: 177 EEFFHNPQAIDIESEDFSSLPPEVKHEILTDMK-EFT 212
Score = 45 (20.9 bits), Expect = 7.9e-36, Sum P(3) = 7.9e-36
Identities = 6/19 (31%), Positives = 15/19 (78%)
Query: 96 NVDPAVFAALPPSMQHQLL 114
+++ F++LPP ++H++L
Sbjct: 187 DIESEDFSSLPPEVKHEIL 205
Score = 43 (20.2 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 224 MREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFR 261
+++Q +A+ RQ+ K +E ++ +LK A +
Sbjct: 83 LKKQTLAKRRQRKDSASIDSRKTTEKLLKTFLKRQALK 120
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 419 (152.6 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 95/252 (37%), Positives = 148/252 (58%)
Query: 774 KKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLK 833
++N + E + + +A+ S V SD P + + + TD + EE + +
Sbjct: 537 EENREKREEEEESSADESF--VEVSDAEEPPETDESHINTHQTDYNTEEKEEEVEEEE-E 593
Query: 834 DSKQNTGIF--ATKAIENVHAEAT-EKILEEEMQILDHEYM----YLGDEQKKLERNAES 886
S Q+T +++ A + E I EE+Q+LD E L ++ ++ +R++ +
Sbjct: 594 SSAQSTDQIEDVDESVNEAPAVSEWEHIDTEELQLLDRELQDEQQTLREQHQQQQRSSST 653
Query: 887 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYK 946
V+ +M E QELL++FG+P+I+APMEAEAQCA ++ + G +TDDSD++LFG R VY+
Sbjct: 654 VTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYR 713
Query: 947 NIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPE 1006
N F+ KYVE Y + D++ LGL R KLI +A LLGSDYTEGI G+G V +E++N FP
Sbjct: 714 NFFNQNKYVEHYQIVDMQNQLGLDRSKLINLAYLLGSDYTEGIPGVGYVTGMEILNEFPG 773
Query: 1007 E--DGLSKFREW 1016
+ L + EW
Sbjct: 774 AGLEPLVQLSEW 785
Score = 72 (30.4 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 32/130 (24%), Positives = 62/130 (47%)
Query: 1058 VSEFDESISQFD-EDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAK-IRSKRIKKA 1115
+ EF +S +F +++ E Q + K + TQLR+++F+ ++ + IRS+R+++A
Sbjct: 848 IKEFCQS--RFGWSSRKTEETLQPVLKQLQSQQTQLRIDSFFRLEQQDRQQIRSERLRRA 905
Query: 1116 VKGITGSQSLLLMDD---AGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNM 1172
V + + +D + Q+ +S L G S P+ + + GA+
Sbjct: 906 VICMKRKEREEEEEDESVSAQKQGRSEADEAPGPLAGGFISSD--PQTSTQG-GGAKQIR 962
Query: 1173 EKSSQSQSRE 1182
+SS S S E
Sbjct: 963 AESSSSSSEE 972
Score = 63 (27.2 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 36/163 (22%), Positives = 69/163 (42%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
+++ + +PP ++ ++L +M+E R K + +FS+ Q+ L+ +
Sbjct: 190 DINSEQFSLMPPEIKHEILKEMKE-FSKRRRTLLHKPPERSGEFSQYQLAGLLQRNRLNQ 248
Query: 263 EIDEVQKAAAGRGVAG------VQTSRIASEANREFIFSSSFTGDKQVL----------- 305
++ V++ R G + R+ SE + +I G K+V
Sbjct: 249 RLECVEQEMNQRSSGGHTDQQNTEIRRLVSEDSSHYILIKG--GQKKVSAVATPAAPALW 306
Query: 306 TSSRVEGK-KDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQS 347
+SS E K +++ + P PVS+ N S S+ S DQS
Sbjct: 307 SSSPWEPKGRNKGKPEPLWRPVSEEEENKPS--SSSSSPEDQS 347
Score = 62 (26.9 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 40/193 (20%), Positives = 82/193 (42%)
Query: 224 MREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSR 283
+++Q +A RQ+ ++ + + SE +Q +LK A R + E + +A ++ V+
Sbjct: 83 LKKQTLAVRRQRREETNRESRQTSEKLLQTFLKRQAIRAALGENSQESAP-SLSSVRRD- 140
Query: 284 IASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSS 343
E + ++ + D + +SS E DE S + +N ++D +S
Sbjct: 141 ---EHDDIYVLPALPPEDDRQESSSEEEKDGDEALHNYSRFQ-EELCDNPDAVD---INS 193
Query: 344 TDQSNSVTKLGPE--ESRKSFADDVETYLD---ERGRVRLSKVRAMGIRMTRDLQRNLEM 398
S ++ E + K F+ T L ER S+ + G+ L + LE
Sbjct: 194 EQFSLMPPEIKHEILKEMKEFSKRRRTLLHKPPERSG-EFSQYQLAGLLQRNRLNQRLEC 252
Query: 399 MKEIEQERPNGNN 411
+++ +R +G +
Sbjct: 253 VEQEMNQRSSGGH 265
Score = 41 (19.5 bits), Expect = 9.9e-36, Sum P(4) = 9.9e-36
Identities = 5/19 (26%), Positives = 14/19 (73%)
Query: 96 NVDPAVFAALPPSMQHQLL 114
+++ F+ +PP ++H++L
Sbjct: 190 DINSEQFSLMPPEIKHEIL 208
Score = 38 (18.4 bits), Expect = 4.5e-36, Sum P(3) = 4.5e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 565 SFPAESEKTVSNIEEEANLQEAI 587
+ P E ++ S+ EEE + EA+
Sbjct: 150 ALPPEDDRQESSSEEEKDGDEAL 172
Score = 38 (18.4 bits), Expect = 9.9e-36, Sum P(4) = 9.9e-36
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 308 SRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTD 345
SR +K+E++ P E+ +S D+S +D
Sbjct: 523 SRDPSEKEEREDQPEENREKREEEEESSADESFVEVSD 560
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 408 (148.7 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 82/163 (50%), Positives = 111/163 (68%)
Query: 856 EKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEA 915
E++ E +L ++ +Q++ ER A +V+ +MF E QELL++FG+PYI APMEAEA
Sbjct: 1122 EELASLESDLLAQQHSLKAQKQQQ-ERVAATVTGQMFLESQELLRLFGVPYIEAPMEAEA 1180
Query: 916 QCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLI 975
QCA ++L++ G +TDDSD++LFGAR VYKN F+ K+VE Y D LGL R KLI
Sbjct: 1181 QCAILDLSDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHSQLGLDRNKLI 1240
Query: 976 RMALLLGSDYTEGISGIGIVNAIEVVNAFPEE--DGLSKFREW 1016
+A LLGSDYTEGI +G V A+E++N FP + L KF EW
Sbjct: 1241 NLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEW 1283
Score = 106 (42.4 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 76/403 (18%), Positives = 153/403 (37%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
+++ ++LPP ++ ++L M+E R ++ + + FS+ Q++ LK +
Sbjct: 617 DIESEDFSSLPPEIKHEILTDMKE-FTKRRRTLFEPMPEESNDFSQYQLKGLLKKNYLNQ 675
Query: 263 EIDEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTGD--KQVLTSSRVEGKKDEQQQI 320
I+ VQK + +Q + + S + + ++ KK Q +
Sbjct: 676 HIENVQKEMNQQHSGQIQRQYEDEGGFLKEVESRRVVSEDTSHYILIKGIQAKKAAQGAL 735
Query: 321 PSEHPVSDSA-NNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYL---DERGRV 376
S S +A ++ + D +S ++ L S +++E RG
Sbjct: 736 ASLPTSSANAVHSRLTPDAEPRASPPSPRTLRALQAALLGGSSEEELEAEAAAAGRRGEG 795
Query: 377 RLSKVRAMGIRMTRDL-QRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKR 435
+ R G R R L + + + P+ ++ AG + E+ +A P+
Sbjct: 796 SHQQARGAGARKPRKLLASSSDEEAPLLTGAPHSACVSLAGVRVASAESDRERAAPAP-- 853
Query: 436 KFIGTSLDDTNESVSSIERNKQSTLKSGI---SLELSFKDNSENNCXXXXXIFAHLAAGK 492
+G +ES E+ S + G S E KD + + A G
Sbjct: 854 -LLGAGFCQGSESTVPGEQTPLSDPEEGALQTSRESPVKDGKDPVPLGTTVLLPGAAPGL 912
Query: 493 ---PVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESE 549
P + P P + SS+S +++D + ++ N + L ++E
Sbjct: 913 QSGPEVTPTPPASPSSVSRNETDTKVPELQQALPPPESKYNTSV-----LSSDDETEERT 967
Query: 550 VEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQEAIRRSLL 592
E G + + + S + P E +TVS++ + A+L R + L
Sbjct: 968 PVAEAGGAISLQESRNTPGEPLETVSHLGKVASLNARERENFL 1010
Score = 45 (20.9 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 6/19 (31%), Positives = 15/19 (78%)
Query: 96 NVDPAVFAALPPSMQHQLL 114
+++ F++LPP ++H++L
Sbjct: 617 DIESEDFSSLPPEIKHEIL 635
Score = 45 (20.9 bits), Expect = 6.0e-31, Sum P(3) = 6.0e-31
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 535 PPLNLEEGGISDES-EVEWEE 554
PPL +E S+E E EW+E
Sbjct: 577 PPLEEKEKNSSEEEDEKEWQE 597
Score = 42 (19.8 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 321 PSEHPVSDSANNGASIDKSNFSSTDQ-------SNSVTKLGPEE 357
P E+ +S ++G+ I+ + S+D+ ++S GPEE
Sbjct: 1035 PMENDSEESESDGSFIEVQSIDSSDELPAELHEASSPPXTGPEE 1078
Score = 39 (18.8 bits), Expect = 8.6e-32, Sum P(2) = 8.6e-32
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 632 PNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIG 669
P E + ++ S+ + LGKL I+ SE G
Sbjct: 84 PTGTSEIIYKEENSLENLSNSLGKLPLAWEIDKSEFDG 121
Score = 37 (18.1 bits), Expect = 6.0e-31, Sum P(3) = 6.0e-31
Identities = 25/113 (22%), Positives = 44/113 (38%)
Query: 231 ENRQKYQKVKKAPEK------FSELQIQAY-LKTVAFRREIDEVQKAAAGRGVAGVQTSR 283
E +Y+K KK F L Q + L F E Q +G+A ++
Sbjct: 369 ERGLQYRKTKKVGGNLHCIIAFQRLHWQRFGLWNFPFGTIRQESQPPPHAQGIAKSESED 428
Query: 284 IASEANREFI---FSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNG 333
S+ + FS+SF D S + +++ Q S++ ++ N+G
Sbjct: 429 NISKKQHGRLGRSFSASFHQDSTWKKMSSIHERRNSGYQGYSDYDGNEIENSG 481
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 399 (145.5 bits), Expect = 5.8e-36, Sum P(4) = 5.8e-36
Identities = 81/162 (50%), Positives = 110/162 (67%)
Query: 861 EEMQILDHEYMY----LGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQ 916
EE++ L+ + L ++++ ER A +V+ +MF E QELL++FG+PYI APMEAEAQ
Sbjct: 734 EELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQ 793
Query: 917 CAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIR 976
CA ++L + G +TDDSD++LFGAR VY+N F+ K+VE Y D LGL R KLI
Sbjct: 794 CAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDFHNQLGLDRNKLIN 853
Query: 977 MALLLGSDYTEGISGIGIVNAIEVVNAFPEE--DGLSKFREW 1016
+A LLGSDYTEGI +G V A+E++N FP + L KF EW
Sbjct: 854 LAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEW 895
Score = 77 (32.2 bits), Expect = 5.8e-36, Sum P(4) = 5.8e-36
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
+++ ++LPP ++ ++L M+E R ++ + + + FS+ Q++ LK +
Sbjct: 187 DIESEDFSSLPPEVKHEILTDMKE-FTKRRRTLFEAMPEESDDFSQYQLKGLLKKNYLNQ 245
Query: 263 EIDEVQK 269
I+ VQK
Sbjct: 246 HIEHVQK 252
Score = 66 (28.3 bits), Expect = 7.9e-35, Sum P(4) = 7.9e-35
Identities = 86/395 (21%), Positives = 148/395 (37%)
Query: 211 ALPPS------MQLDLL-VQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTV-AFRR 262
A PPS MQ LL E+L +ENR++ + + AP E I +T+ A +R
Sbjct: 337 ATPPSPRTLLAMQAALLGSSSEEELESENRRQ-ARGRNAPAAVDEGSISP--RTLSAIKR 393
Query: 263 EIDEVQ--KAAAG----RGVAGVQTSRIAS--EANREFIFSSSFTGDK--QVLTSSRVEG 312
+D+ + K AG G G + RI S E + E + G L SS V
Sbjct: 394 ALDDDEDVKVCAGDDVQTGGPGAEEMRINSSTENSDEGLKVRDGKGIPFTATLASSSVNS 453
Query: 313 KKDEQQQIPSEHPVSDSANNG----ASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVET 368
++ +DS + F +D+S + + R V
Sbjct: 454 AEEHVASTNEGREPTDSVPKEQMSLVHVGTEAFPISDES----MIKDRKDRLPLESAVVR 509
Query: 369 YLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSK 428
+ D G ++ T + +N + +EQ+ + S L L+ +K
Sbjct: 510 HSDAPGLPNGRELTPASPTCTNSVSKNETHAEVLEQQNELCPYESKFDSSL-LSSDDETK 568
Query: 429 AVPSEKRKFIG-TSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAH 487
P+ + IG SL +T+ S+ S+ +++ +S K++ EN
Sbjct: 569 CKPNSASEVIGPVSLQETS-SIVSVPSEAVDNVENVVSFNA--KEH-ENFLETIQEQQTT 624
Query: 488 LAAGKPVIFPNSPRAHSSISVSDSDWE-EGTTERKGSSLSDDANAGINPPLNLEEGGISD 546
+AG+ +I + P+A + + + E +G+ S +SD+ P + +
Sbjct: 625 ESAGQDLI--SIPKAVEPMEIDSEESESDGSFIEVQSVISDEELQAEFPETSKPPSEQGE 682
Query: 547 ESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEA 581
E V EG + A SL V +EA
Sbjct: 683 EELVGTREGEAPAESESLLRDNSERDDVDGEPQEA 717
Score = 55 (24.4 bits), Expect = 5.8e-36, Sum P(4) = 5.8e-36
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 1403 TCF-DSSDGVHCDVGLGDSTTSSNSKEATNGLE-NVGRTDTFDTEPNPVVQNATSTDSAR 1460
TC +SSDG + +S++ N + T E +D+ ++ V+N +T S+
Sbjct: 1091 TCLSESSDGSSSEDA--ESSSLMNVQRRTAAKEPKTSASDSQNSVKEAPVKNGGATTSSS 1148
Query: 1461 NDA----GRASRGSLTAMTFLRRKRRR 1483
+D+ G+ +TA + +KRR+
Sbjct: 1149 SDSDDDGGKEKMVLVTARSVFGKKRRK 1175
Score = 48 (22.0 bits), Expect = 5.8e-36, Sum P(4) = 5.8e-36
Identities = 80/364 (21%), Positives = 139/364 (38%)
Query: 254 YLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGK 313
+LK V RR + E + + G+Q +A + SS G + SS E
Sbjct: 272 FLKEVESRRVVSE--DTSHYILIKGIQAKTVAEVDSESLPSSSKMHGMSFDVKSSPCEKL 329
Query: 314 KDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDER 373
K E++ P P S ++ + S+ + +L E R++ + +DE
Sbjct: 330 KTEKE--PDATP--PSPRTLLAMQAALLGSSSEE----ELESENRRQARGRNAPAAVDE- 380
Query: 374 GRVR---LSKV-RAMG----IRMTR--DLQRNLEMMKEIEQERPNGNNITGA----GSML 419
G + LS + RA+ +++ D+Q +E+ N+ G G +
Sbjct: 381 GSISPRTLSAIKRALDDDEDVKVCAGDDVQTGGPGAEEMRINSSTENSDEGLKVRDGKGI 440
Query: 420 TLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSG-----ISLELSFKDNS 474
T S +V S + T+ + E S+ + + S + G IS E KD
Sbjct: 441 PFTATLASSSVNSAEEHVASTN--EGREPTDSVPKEQMSLVHVGTEAFPISDESMIKDRK 498
Query: 475 ENNCXXXXXIFAHLAAGKP---VIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANA 531
+ + A G P + P SP +S+S +++ E E++ ++
Sbjct: 499 DRLPLESAVVRHSDAPGLPNGRELTPASPTCTNSVSKNETHAE--VLEQQNELCPYESKF 556
Query: 532 GINPPLNLEEGGISDESEVEWEEGP-SCAPKSSL-SFPAES----EKTVS-NIEEEANLQ 584
+ + +E S E GP S SS+ S P+E+ E VS N +E N
Sbjct: 557 DSSLLSSDDETKCKPNSASE-VIGPVSLQETSSIVSVPSEAVDNVENVVSFNAKEHENFL 615
Query: 585 EAIR 588
E I+
Sbjct: 616 ETIQ 619
Score = 48 (22.0 bits), Expect = 7.9e-35, Sum P(4) = 7.9e-35
Identities = 18/84 (21%), Positives = 43/84 (51%)
Query: 96 NVDPAVFAALPPSMQHQLLVRNND-AKGKNVL-------SDDLGQADTVGISPESHDVVS 147
+++ F++LPP ++H++L + K + L SDD Q G+ +++ ++
Sbjct: 187 DIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPEESDDFSQYQLKGLLKKNY--LN 244
Query: 148 KSRDH--KKLDEMLAASIAAE-ED 168
+ +H K++++ + I + ED
Sbjct: 245 QHIEHVQKEMNQQHSGHIRRQYED 268
Score = 47 (21.6 bits), Expect = 6.5e-33, Sum P(5) = 6.5e-33
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 535 PPLNLEEGGISDES-EVEWEE 554
PPL EE S+E E EW+E
Sbjct: 147 PPLQEEEKHSSEEEDEKEWQE 167
Score = 47 (21.6 bits), Expect = 6.5e-33, Sum P(5) = 6.5e-33
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 752 EHLTHEDKKNNCEAET-SVLPGDKKNEIEVEMKHDFT 787
E H + + E+E S LP + K+EI +MK +FT
Sbjct: 177 EEFFHNPQAIDIESEDFSSLPPEVKHEILTDMK-EFT 212
Score = 44 (20.5 bits), Expect = 6.5e-33, Sum P(5) = 6.5e-33
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 224 MREQLMAENRQKYQKVKKAPEKFSELQIQAYLKT----VAFRREIDE 266
+++Q + + RQ+ K +E ++ +LK AFR + DE
Sbjct: 83 LKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIKTAFRSKRDE 129
Score = 37 (18.1 bits), Expect = 4.1e-34, Sum P(4) = 4.1e-34
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 1138 SRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKS 1175
S + +++ L N R+ A K+ + S S +QN+++++
Sbjct: 1101 SSEDAESSSLMNVQRRT--AAKEPKTSASDSQNSVKEA 1136
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 414 (150.8 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 85/171 (49%), Positives = 114/171 (66%)
Query: 848 ENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYI 907
++++ E E LE ++ H L +Q++ ER A +V+ +MF E QELL++FG+PYI
Sbjct: 730 QDINLEELET-LENDLLAQQHS---LKAQQQQQERTAATVTGQMFLESQELLRLFGIPYI 785
Query: 908 IAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDL 967
APMEAEAQCA ++L + G +TDDSD++LFGAR VYKN F+ K+VE Y D L
Sbjct: 786 EAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHNQL 845
Query: 968 GLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEE--DGLSKFREW 1016
GL R KLI +A LLGSDYTEGI +G V A+E++N FP + L KF EW
Sbjct: 846 GLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEW 896
Score = 65 (27.9 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
+++ ++LP ++ ++L M+E R ++ + + FS+ Q++ LK +
Sbjct: 187 DIESEDFSSLPLEIKHEILTDMKE-FTKRRRTLFEAMPEESNDFSQYQLKGLLKKNYLNQ 245
Query: 263 EIDEVQK 269
I+ VQK
Sbjct: 246 HIENVQK 252
Score = 51 (23.0 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 89/374 (23%), Positives = 139/374 (37%)
Query: 210 AALPPS------MQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRRE 263
AA PPS MQ +L E+ +QK K AP S L + A K + +
Sbjct: 335 AATPPSPRTSLAMQAAMLGSNSEEEWESEKQKRSDAKNAP--VSPLTVLAIQKLL----D 388
Query: 264 IDEVQKAAAGRGV----AGV----------QTSRIASEANREFIFSSSFTGDKQVLTSSR 309
DE +A AG V +GV +T E + E + TG L +S
Sbjct: 389 DDEDMEAHAGNDVQTGGSGVKKLLENSCCEETVEDLKEGDGEGMLLP--TGPHLPLMNSA 446
Query: 310 VEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDV--E 367
E D +++ +S S+ K S + + E + K D V E
Sbjct: 447 HETSSDTGKRLADPAHLSHPVFCPGSVLKEEMSLMHLVSEAFQKSDEFTVKGREDPVPSE 506
Query: 368 TYL----DERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIE-QER-PNGNNITGAGSMLTL 421
+ + D G +++ + + RN KE E QE P+G+ S+L+
Sbjct: 507 STMVMPSDAPGLQSGRELKPTPGMSSSSVSRNETYTKEPELQELCPSGSKYDS--SVLSS 564
Query: 422 N-ETGTSKAVPSEKRKFIGT-SLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCX 479
+ ET K SE IGT L +T+ + S+ S L+ +S F NC
Sbjct: 565 DDETECEKNCDSE---IIGTLHLQETSNT-QSVPLEAMSNLEDAVS----FNGKEPENCL 616
Query: 480 XXXXIFAHL-AAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLS-DDANAGINPPL 537
+ +A + +I + P+ S+ + D EE +E GS + + P
Sbjct: 617 KTIQEHETVESADQDLI--SVPK---SMEPMEMDSEE--SESDGSFIEVQSITSNYEVPA 669
Query: 538 NLEEGGISDESEVE 551
L E S + E
Sbjct: 670 ELHEASKSPSGQSE 683
Score = 49 (22.3 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 535 PPLNLEEGGISDES-EVEWEE 554
PPL EE S+E E EW+E
Sbjct: 147 PPLQKEEKNSSEEEDEREWQE 167
Score = 37 (18.1 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 224 MREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFR 261
+++Q +A+ R + K +E ++ +LK A +
Sbjct: 83 LKKQTLAKRRHRKDLAATDSRKTTEKLLKTFLKRQAIK 120
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 423 (154.0 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 89/176 (50%), Positives = 112/176 (63%)
Query: 843 ATKAIENVHAEATEKILEEEMQILDHEY--MYLGDEQKKLERNAESVSSEMFAECQELLQ 900
A + E+V AT D+E L +QKK R+A+ V+ M ECQ+LL+
Sbjct: 758 AAEGEEHVRFAATLNSAPHSEGTFDYEQELKQLRSQQKKDRRDADEVTQIMITECQQLLR 817
Query: 901 MFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM 960
+FGLPYI APMEAEAQCA + LVDG++TDDSD+FLFG VYKN+F+ KYVE Y
Sbjct: 818 LFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMFNQSKYVECYLT 877
Query: 961 QDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREW 1016
D+EK+ L R KLI A LLGSDYTEGI GIG V A+E++ F L +FR+W
Sbjct: 878 ADLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALEILTEF---SSLEEFRDW 930
Score = 63 (27.2 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 1129 DDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERK 1184
D + Q++S +RK G G R + P++A E+ G++ N + ++ + R RK
Sbjct: 1084 DPSSQDLSALPARRKGKGTRKGAKRGAE-PEEAAENGQGSREN-DGATAKKRRGRK 1137
Score = 39 (18.8 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 536 PLNLEEGGISDESEVEWEEGPSCAPKSSLSFP 567
PLN+++ + +E+GPS K ++ P
Sbjct: 512 PLNVKKPEPVENDAGGFEKGPSKEAKENVPLP 543
Score = 38 (18.4 bits), Expect = 9.5e-33, Sum P(3) = 9.5e-33
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 1166 SGAQNNMEKSSQSQSRERKVLEKFVLAEME 1195
SG Q+ MEK+ RE + L ++E
Sbjct: 1053 SGGQSRMEKAFSRLRREAGADQDAELVDVE 1082
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 414 (150.8 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 85/171 (49%), Positives = 114/171 (66%)
Query: 848 ENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYI 907
++++ E E LE ++ H L +Q++ ER A +V+ +MF E QELL++FG+PYI
Sbjct: 1145 QDINLEELET-LENDLLAQQHS---LKAQQQQQERTAATVTGQMFLESQELLRLFGIPYI 1200
Query: 908 IAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDL 967
APMEAEAQCA ++L + G +TDDSD++LFGAR VYKN F+ K+VE Y D L
Sbjct: 1201 EAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHNQL 1260
Query: 968 GLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEE--DGLSKFREW 1016
GL R KLI +A LLGSDYTEGI +G V A+E++N FP + L KF EW
Sbjct: 1261 GLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEW 1311
Score = 65 (27.9 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 203 NVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRR 262
+++ ++LP ++ ++L M+E R ++ + + FS+ Q++ LK +
Sbjct: 612 DIESEDFSSLPLEIKHEILTDMKE-FTKRRRTLFEAMPEESNDFSQYQLKGLLKKNYLNQ 670
Query: 263 EIDEVQK 269
I+ VQK
Sbjct: 671 HIENVQK 677
Score = 58 (25.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 87/368 (23%), Positives = 135/368 (36%)
Query: 210 AALPPS------MQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRRE 263
AA PPS MQ +L E+ +QK K AP S L + A K + +
Sbjct: 760 AATPPSPRTSLAMQAAMLGSNSEEEWESEKQKRSDAKNAP--VSPLTVLAIQKLL----D 813
Query: 264 IDEVQKAAAGRGV----AGV----------QTSRIASEANREFIFSSSFTGDKQVLTSSR 309
DE +A AG V +GV +T E + E + TG L +S
Sbjct: 814 DDEDMEAHAGNDVQTGGSGVKKLLENSCCEETVEDLKEGDGEGMLLP--TGPHLPLMNSA 871
Query: 310 VEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETY 369
E D +++ V + + F +D+ + P S + +
Sbjct: 872 HETSSDTGKRLADPGSVLKEEMSLMHLVSEAFQKSDEFTVKGREDPVPSESTMVMPSDAP 931
Query: 370 LDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIE-QER-PNGNNITGAGSMLTLN-ETGT 426
+ GR L M + + RN KE E QE P+G+ S+L+ + ET
Sbjct: 932 GLQSGR-ELKPTPGMS---SSSVSRNETYTKEPELQELCPSGSKYDS--SVLSSDDETEC 985
Query: 427 SKAVPSEKRKFIGT-SLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIF 485
K SE IGT L +T+ + S+ S L+ +S F NC
Sbjct: 986 EKNCDSE---IIGTLHLQETSNT-QSVPLEAMSNLEDAVS----FNGKEPENCLKTIQEH 1037
Query: 486 AHL-AAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLS-DDANAGINPPLNLEEGG 543
+ +A + +I + P+ S+ + D EE +E GS + + P L E
Sbjct: 1038 ETVESADQDLI--SVPK---SMEPMEMDSEE--SESDGSFIEVQSITSNYEVPAELHEAS 1090
Query: 544 ISDESEVE 551
S + E
Sbjct: 1091 KSPSGQSE 1098
Score = 49 (22.3 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 535 PPLNLEEGGISDES-EVEWEE 554
PPL EE S+E E EW+E
Sbjct: 572 PPLQKEEKNSSEEEDEREWQE 592
Score = 42 (19.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 23/89 (25%), Positives = 35/89 (39%)
Query: 588 RRSLLDVCIEKP--NYALSEHNKCENLGENAC--DGTWLYDRENN---MDDPNFLGESVS 640
R + +C + N A S + K N ++C D T L N + P E +
Sbjct: 34 REKIYAICSDYAFLNQATSIY-KTPNSTRSSCLPDSTSLSAGNNPSRYIGIPTSTSEIIY 92
Query: 641 QQHESICEYVDGLGKLDTVGGINNSEVIG 669
+ S+ + LGKL I+ SE G
Sbjct: 93 NEENSLENLSNSLGKLPLAWEIDKSEFDG 121
Score = 37 (18.1 bits), Expect = 5.8e-32, Sum P(3) = 5.8e-32
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 224 MREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFR 261
+++Q +A+ R + K +E ++ +LK A +
Sbjct: 508 LKKQTLAKRRHRKDLAATDSRKTTEKLLKTFLKRQAIK 545
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 402 (146.6 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 81/157 (51%), Positives = 106/157 (67%)
Query: 862 EMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYME 921
E +L + +Q++ ER A +V+ +MF E QELL++FG+PYI APMEAEAQCA ++
Sbjct: 756 ESNLLTQQNTLKAQKQQQ-ERVAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILD 814
Query: 922 LANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLL 981
L + G +TDDSD++LFGAR VYKN F+ K+VE Y D LGL R KLI +A LL
Sbjct: 815 LTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLL 874
Query: 982 GSDYTEGISGIGIVNAIEVVNAFPEE--DGLSKFREW 1016
GSDYTEGI +G V A+E++N FP + L KF EW
Sbjct: 875 GSDYTEGIPTVGCVTAMEILNEFPGHGLEPLRKFSEW 911
Score = 60 (26.2 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 211 ALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQK 269
+LP ++ ++L M+E R ++ + + FS+ Q++ LK + I+ V+K
Sbjct: 195 SLPLEVKHEILTDMKE-FTKRRRTLFEAMPEESNDFSQYQLKGLLKKNYLNQHIENVEK 252
Score = 57 (25.1 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 74/346 (21%), Positives = 126/346 (36%)
Query: 548 SEVEWEEGPSCAPKSSLSFPAES---EKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALS 604
+E + E PSC+ K S + +S EK E +A+ R+LL ++ S
Sbjct: 301 TEADSEPLPSCSEKHSGALDTKSPPCEKLKPKKEPDASPPSP--RTLL--AMQAALLGSS 356
Query: 605 EHNKCENLGENACD--GTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVG-G 661
++ E CD E ++ L ++ + + E + + T G G
Sbjct: 357 SEDELEGKHRRPCDVKSPPAPAPEGSVSPLTLL--AIQRALDDDDEDLKLHASVQTEGAG 414
Query: 662 INNSEVIGSLGRELKLYEPRNSD-EKEMLINKPFEKDNSYFEQSRQGANDGAN--DGRSL 718
+ S E + EP D ++E+L P + E+ +D D L
Sbjct: 415 RRKPRPLVSSSDEEAVEEPEVRDGDRELLTEAPRVASVTLTEEHVMKKSDEKEQTDSAPL 474
Query: 719 CSDAPCEDSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLP-GDKKNE 777
C+ G+ + Q+ L + T +D K+ E++V+P GD
Sbjct: 475 LRTVFCQ--GSESSFPKEQMPSMHALKEPFQPSAESTAQDGKDLVPLESTVVPHGDAPG- 531
Query: 778 IEVEMKHDFTAEPSCRTVGTSDT--SIPLVK------TSGNASIYDTDIEQKSAEERTPD 829
+ E + T S +V S T +P + + G AS+ +D E + + PD
Sbjct: 532 LPGEPEQIPTPPTSPSSVSRSGTYTRVPEPQQALPPESKGAASVLSSDDETEPEKNPAPD 591
Query: 830 ---TYLKDSKQNTGIFATKAIENVHAEATEKILEEE---MQILDHE 869
T NT A + ++ EA E E I +HE
Sbjct: 592 VAGTASLQESSNTLSVAIDTVSDLGNEAPSSAPEHENFLKTIQEHE 637
Score = 46 (21.3 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1454 TSTDSARNDAGRASRGSLTAM-TFLRRK-RRRS 1484
TS+ S +D GRA +TA F ++K RRRS
Sbjct: 1161 TSSSSDDDDGGRAKPVLVTARPVFGKKKGRRRS 1193
Score = 45 (20.9 bits), Expect = 5.9e-33, Sum P(4) = 5.9e-33
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 535 PPLNLEEGGISDES-EVEWEE 554
PPL +E S+E E EW+E
Sbjct: 147 PPLQEKEKNSSEEEDEKEWQE 167
Score = 44 (20.5 bits), Expect = 3.6e-33, Sum P(4) = 3.6e-33
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 321 PSEHPVSDSANNGASIDKSNFSSTD------QSNSVTKLGPEESRKSFADDVETYLDERG 374
P+E DS ++G+ I+ + +S+D Q S G E + + E D G
Sbjct: 655 PTEVDSEDSESDGSFIEVQSINSSDELQAELQEASRPPSGQSEEEPTGTEKEEATGDSEG 714
Query: 375 RVR-LSKVRAMGIRMTRDLQRNLE 397
R +S+ A+ + +++ E
Sbjct: 715 LPREISESEAVATEKHGETEKDAE 738
Score = 40 (19.1 bits), Expect = 9.4e-33, Sum P(4) = 9.4e-33
Identities = 26/88 (29%), Positives = 36/88 (40%)
Query: 491 GKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGI---SDE 547
G+P P P + SS+S S GT R + + A PP + + DE
Sbjct: 534 GEPEQIPTPPTSPSSVSRS------GTYTR----VPEPQQA--LPPESKGAASVLSSDDE 581
Query: 548 SEVEWEEGPSCAPKSSLSFPAESEKTVS 575
+E E P A +SL ES T+S
Sbjct: 582 TEPEKNPAPDVAGTASLQ---ESSNTLS 606
Score = 37 (18.1 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 567 PAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGT 620
PA ++++E +N ++ D+ E P+ A N + + E+ G+
Sbjct: 588 PAPDVAGTASLQESSNTLSVAIDTVSDLGNEAPSSAPEHENFLKTIQEHESVGS 641
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 412 (150.1 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 97/279 (34%), Positives = 147/279 (52%)
Query: 752 EHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNA 811
E L E + + P + +EIE K S +S+ ++
Sbjct: 601 EILEQEQSDEEEQEQEQEKPDNDSDEIEEISKEQVNISISEEKESVPPSSVEDIR---KP 657
Query: 812 SIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYM 871
++ D E++ EE ++ + KA + + E + +E Q+L ++
Sbjct: 658 AVMDYQFEEEDEEELVQQLQKEELDHESLKHQIKASHAIPLTSLETRITDE-QLLQEKF- 715
Query: 872 YLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
+K +R+++ V+ M + QELL+ FG+PYI APMEAEAQCA + LVDG+VT
Sbjct: 716 ------QKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVT 769
Query: 932 DDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISG 991
DDSD FLFG +YKN+FD ++YVE Y D+ + LT+ KLI +ALLLGSDYTEGI G
Sbjct: 770 DDSDCFLFGGDKIYKNMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKG 829
Query: 992 IGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDV 1030
IG V A+E++ F L KF+EW + ++ K ++
Sbjct: 830 IGPVQAMEILAEF---GNLEKFKEWFDKHTKSVADKTEL 865
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 412 (150.1 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 97/279 (34%), Positives = 147/279 (52%)
Query: 752 EHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNA 811
E L E + + P + +EIE K S +S+ ++
Sbjct: 601 EILEQEQSDEEEQEQEQEKPDNDSDEIEEISKEQVNISISEEKESVPPSSVEDIR---KP 657
Query: 812 SIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYM 871
++ D E++ EE ++ + KA + + E + +E Q+L ++
Sbjct: 658 AVMDYQFEEEDEEELVQQLQKEELDHESLKHQIKASHAIPLTSLETRITDE-QLLQEKF- 715
Query: 872 YLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
+K +R+++ V+ M + QELL+ FG+PYI APMEAEAQCA + LVDG+VT
Sbjct: 716 ------QKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVT 769
Query: 932 DDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISG 991
DDSD FLFG +YKN+FD ++YVE Y D+ + LT+ KLI +ALLLGSDYTEGI G
Sbjct: 770 DDSDCFLFGGDKIYKNMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKG 829
Query: 992 IGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDV 1030
IG V A+E++ F L KF+EW + ++ K ++
Sbjct: 830 IGPVQAMEILAEF---GNLEKFKEWFDKHTKSVADKTEL 865
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 402 (146.6 bits), Expect = 8.9e-34, Sum P(4) = 8.9e-34
Identities = 81/157 (51%), Positives = 106/157 (67%)
Query: 862 EMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYME 921
E +L + +Q++ ER A +V+ +MF E QELL++FG+PYI APMEAEAQCA ++
Sbjct: 1170 ESNLLTQQNTLKAQKQQQ-ERVAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILD 1228
Query: 922 LANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLL 981
L + G +TDDSD++LFGAR VYKN F+ K+VE Y D LGL R KLI +A LL
Sbjct: 1229 LTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLL 1288
Query: 982 GSDYTEGISGIGIVNAIEVVNAFPEE--DGLSKFREW 1016
GSDYTEGI +G V A+E++N FP + L KF EW
Sbjct: 1289 GSDYTEGIPTVGCVTAMEILNEFPGHGLEPLRKFSEW 1325
Score = 60 (26.2 bits), Expect = 8.9e-34, Sum P(4) = 8.9e-34
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 211 ALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQK 269
+LP ++ ++L M+E R ++ + + FS+ Q++ LK + I+ V+K
Sbjct: 619 SLPLEVKHEILTDMKE-FTKRRRTLFEAMPEESNDFSQYQLKGLLKKNYLNQHIENVEK 676
Score = 58 (25.5 bits), Expect = 8.9e-34, Sum P(4) = 8.9e-34
Identities = 38/159 (23%), Positives = 61/159 (38%)
Query: 726 DSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLP-GDKKNEIEVEMKH 784
DSG+ + Q+ L + T +D K+ E++V+P GD + E +
Sbjct: 894 DSGSESSFPKEQMPSMHALKEPFQPSAESTAQDGKDLVPLESTVVPHGDAPG-LPGEPEQ 952
Query: 785 DFTAEPSCRTVGTSDT--SIPLVK------TSGNASIYDTDIEQKSAEERTPD---TYLK 833
T S +V S T +P + + G AS+ +D E + + PD T
Sbjct: 953 IPTPPTSPSSVSRSGTYTRVPEPQQALPPESKGAASVLSSDDETEPEKNPAPDVAGTASL 1012
Query: 834 DSKQNTGIFATKAIENVHAEATEKILEEE---MQILDHE 869
NT A + ++ EA E E I +HE
Sbjct: 1013 QESSNTLSVAIDTVSDLGNEAPSSAPEHENFLKTIQEHE 1051
Score = 47 (21.6 bits), Expect = 2.7e-30, Sum P(4) = 2.7e-30
Identities = 36/161 (22%), Positives = 70/161 (43%)
Query: 215 SMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQK----- 269
+MQ LL E + ++ VK P E + L +A +R +D+ +
Sbjct: 771 AMQAALLGSSSEDELEGKHRRPCDVKSPPAPAPEGSVSP-LTLLAIQRALDDDDEDLKLH 829
Query: 270 AAAGRGVAGVQTSR-IASEANREFIFSSSFT-GDKQVLTSS-RVEGKKDEQQQIPSEHPV 326
A+ AG + R + S ++ E + GD+++LT + RV ++ + +
Sbjct: 830 ASVQTEGAGRRKPRPLVSSSDEEAVEEPEVRDGDRELLTEAPRVASVTLTEEHVMKKSDE 889
Query: 327 SDSANNGASIDKSNFSSTDQSNSVTKLG-P-EESRKSFADD 365
+ ++G+ +S+F +Q S+ L P + S +S A D
Sbjct: 890 KEQTDSGS---ESSFPK-EQMPSMHALKEPFQPSAESTAQD 926
Score = 46 (21.3 bits), Expect = 8.9e-34, Sum P(4) = 8.9e-34
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1454 TSTDSARNDAGRASRGSLTAM-TFLRRK-RRRS 1484
TS+ S +D GRA +TA F ++K RRRS
Sbjct: 1575 TSSSSDDDDGGRAKPVLVTARPVFGKKKGRRRS 1607
Score = 45 (20.9 bits), Expect = 1.4e-31, Sum P(5) = 1.4e-31
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 535 PPLNLEEGGISDES-EVEWEE 554
PPL +E S+E E EW+E
Sbjct: 571 PPLQEKEKNSSEEEDEKEWQE 591
Score = 44 (20.5 bits), Expect = 2.4e-32, Sum P(4) = 2.4e-32
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 321 PSEHPVSDSANNGASIDKSNFSSTD------QSNSVTKLGPEESRKSFADDVETYLDERG 374
P+E DS ++G+ I+ + +S+D Q S G E + + E D G
Sbjct: 1069 PTEVDSEDSESDGSFIEVQSINSSDELQAELQEASRPPSGQSEEEPTGTEKEEATGDSEG 1128
Query: 375 RVR-LSKVRAMGIRMTRDLQRNLE 397
R +S+ A+ + +++ E
Sbjct: 1129 LPREISESEAVATEKHGETEKDAE 1152
Score = 44 (20.5 bits), Expect = 3.9e-32, Sum P(4) = 3.9e-32
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 595 CIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDD-PNFLGE 637
C+ + +N +G +A +Y+ EN++++ N LG+
Sbjct: 63 CLSDSTSLSAANNSSRYIGISASTSDIIYNEENSLENLSNSLGK 106
Score = 41 (19.5 bits), Expect = 2.9e-31, Sum P(5) = 2.9e-31
Identities = 51/213 (23%), Positives = 78/213 (36%)
Query: 371 DERGRVRLS-KVRAMGIRMTRDLQRNLEMMKEIEQERPNGNN--ITGAGSM--LTLNETG 425
DE ++ S + G R R L + + E E +G+ +T A + +TL E
Sbjct: 823 DEDLKLHASVQTEGAGRRKPRPLVSSSDEEAVEEPEVRDGDRELLTEAPRVASVTLTEEH 882
Query: 426 TSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIF 485
K +++ G+ E + S+ K+ S S KD
Sbjct: 883 VMKKSDEKEQTDSGSESSFPKEQMPSMHALKEPFQPSAESTAQDGKDLVPLESTVVPHGD 942
Query: 486 AHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGI- 544
A G+P P P + SS+S S GT R + + A PP + +
Sbjct: 943 APGLPGEPEQIPTPPTSPSSVSRS------GTYTR----VPEPQQA--LPPESKGAASVL 990
Query: 545 --SDESEVEWEEGPSCAPKSSLSFPAESEKTVS 575
DE+E E P A +SL ES T+S
Sbjct: 991 SSDDETEPEKNPAPDVAGTASLQ---ESSNTLS 1020
Score = 38 (18.4 bits), Expect = 1.4e-31, Sum P(5) = 1.4e-31
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 297 SFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSD 328
S G KQV + K Q++ P P+ D
Sbjct: 129 SGNGKKQVSKKKTSDKKGRHQREWPQYSPLED 160
Score = 37 (18.1 bits), Expect = 2.9e-31, Sum P(5) = 2.9e-31
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 567 PAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGT 620
PA ++++E +N ++ D+ E P+ A N + + E+ G+
Sbjct: 1002 PAPDVAGTASLQESSNTLSVAIDTVSDLGNEAPSSAPEHENFLKTIQEHESVGS 1055
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 411 (149.7 bits), Expect = 4.6e-33, Sum P(3) = 4.6e-33
Identities = 93/266 (34%), Positives = 156/266 (58%)
Query: 772 GDKKNE-IEVEMKHDFTAEPSCRTVGTS--DTSIPLVKTSGNASIYDTDIEQKSAEERTP 828
GD K+E I+ + T+ PS ++ T + P + +S + ++ +K +E
Sbjct: 639 GDIKSESIDAVLPTLETSSPSL-SIPTDFQKEASPNKGAAALSSKVEPEVVEKLLDEEEE 697
Query: 829 DTYLKDSKQNTGIFATKAIENVHAEATEKILEEE--MQILDHEYMYLGDEQKKLERNAES 886
+ ++ +++ K + +E ++ EE + + L ++++ +R+A+
Sbjct: 698 EMIIRMAEEE------KEYDRFVSELNQRHETEEWNQEAFEKRLKELKNQKRSEKRDADE 751
Query: 887 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYK 946
V+ M ECQELL++FGLPYI+AP EAEAQC+ + LVDG+VTDDSDVFLFG VY+
Sbjct: 752 VTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYR 811
Query: 947 NIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPE 1006
N+F+ K+VE Y M D++++ + + LI++A LLGSDYT G+S +G V A+E+++ FP
Sbjct: 812 NMFNQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLALEILHEFPG 871
Query: 1007 EDGLSKFREWIESPDPTILGKFDVQT 1032
+ GL +F++W + K DV T
Sbjct: 872 DTGLFEFKKWFQRLSTGHASKNDVNT 897
Score = 52 (23.4 bits), Expect = 4.6e-33, Sum P(3) = 4.6e-33
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 205 DPAVLAALPPSMQLDLL--VQMREQL-MAENRQKYQKVKKAPEKFSELQIQAYLKTVAFR 261
D + +LP + + +L ++R +L M + ++ ++ FS QI+ LK R
Sbjct: 219 DSELFQSLPDTDKYSILSAARLRSRLRMGLSSEQLSEMFPNRMDFSRFQIER-LKE---R 274
Query: 262 REIDEVQKAAAGRGVAGVQTSRIASEANREFI 293
++ Q+ G+ SR+ SE NRE+I
Sbjct: 275 NDL--TQRLMDFTGMNEFGPSRVVSEKNREYI 304
Score = 48 (22.0 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 26/105 (24%), Positives = 45/105 (42%)
Query: 336 IDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTR-DLQR 394
I+ +FS+ D + + + P+ + S L R R+ LS + + R D R
Sbjct: 208 INLFDFSNIDFDSELFQSLPDTDKYSILSAAR--LRSRLRMGLSSEQLSEMFPNRMDFSR 265
Query: 395 -NLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFI 438
+E +KE + TG +NE G S+ V + R++I
Sbjct: 266 FQIERLKERNDLTQRLMDFTG------MNEFGPSRVVSEKNREYI 304
Score = 40 (19.1 bits), Expect = 4.6e-33, Sum P(3) = 4.6e-33
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 1139 RKKRKNNGLENGNNR-SQKAPKKAE-ESVSGAQNNMEKSSQSQSR 1181
+ KR N L + N+ S ++P E ++ + A + S + QSR
Sbjct: 1006 KSKRLENALSSFKNQISNQSPMSEEIQADADAFGESKGSDELQSR 1050
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 381 (139.2 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 88/214 (41%), Positives = 126/214 (58%)
Query: 798 SDTSIPLVKTSGNASIYDTDIEQKSAEE-RT--PDTYLKDSKQNTGIFATKAIENVHAEA 854
SD + K S AS + E K EE +T P+ +KD A E + ++
Sbjct: 797 SDEEVSPTKRSSKAS--KSLFEPKEPEEEKTVDPEEIIKD-----------AAEALKSQK 843
Query: 855 TEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAE 914
T + L+E L E L E+ + +R S+S M +CQELL++FG+PYI+APMEAE
Sbjct: 844 TSEELQELATNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAE 903
Query: 915 AQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKL 974
AQCA++ +L G +TDDSD++LFG R+VYKN F K+V + + IE+ R KL
Sbjct: 904 AQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNKHVMEFRAEQIEQTFNCNRGKL 963
Query: 975 IRMALLLGSDYTEGISGIGIVNAIEVVNAFPEED 1008
I++A L+GSDYT GI GIG V A+E++ +F +D
Sbjct: 964 IQLACLVGSDYTTGIHGIGAVTALEILASFSGQD 997
Score = 62 (26.9 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 40/193 (20%), Positives = 82/193 (42%)
Query: 281 TSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHP---VSDSANNGA--S 335
T +I+S+ + F+ K+ + S++ E K + +++P+E S S A S
Sbjct: 315 TRQISSDEHTRFLLVRDLK--KKAMESTKQEVKMEMIEEVPAEEEDEKPSTSTKKEAVKS 372
Query: 336 IDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRN 395
+D D + +++ + EE++ D E Y D +RL++ + +R
Sbjct: 373 VDLGTEFDEDLAKALS-MSMEETKVYDEKDYE-Y-DSDQELRLNRAQTKQLRHAAKGPAR 429
Query: 396 LEM-----MKEIE----QERPNGNNITGAGSMLTLNETGTSKAVPS-EKRKFIGTSLDDT 445
M M + E E N+ +L + T A S E+ K I +++++
Sbjct: 430 AYMIEYGGMNDEEVGNIMEATQFNDTQSLEKLLEITTVPTDMADNSIEEAKLISQAIEES 489
Query: 446 NESVSSIERNKQS 458
+ +IE +K++
Sbjct: 490 KQLSQAIEESKKN 502
Score = 43 (20.2 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 37/168 (22%), Positives = 62/168 (36%)
Query: 451 SIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRAHSSISVSD 510
++ +N + LKS + K N E++ L A + +S S SD
Sbjct: 143 ALGKNAELLLKSPVKRPPPAKKNDEDDLFK----LPELPAASVQDNQDESEQDTSASASD 198
Query: 511 SDWEEGTTERK-GSSLSD-DANAGI--NPPLNLEEGGISDESEVEWEEGPSCAPKSSLSF 566
S ++E T SSL D + N P ++ ++D E + S L
Sbjct: 199 SSFDESTARHSYNSSLQAIDVKSQHFRNLPADVRHEILTDIKETRKQS--SWGRLHEL-- 254
Query: 567 PAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGE 614
PA S+ S + + A++ SL E + L+ C+ E
Sbjct: 255 PARSDDFCSFQMKRLLKRRAVQESLEQAEQEMGGHTLTYAELCDFFNE 302
Score = 42 (19.8 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 15/74 (20%), Positives = 36/74 (48%)
Query: 713 NDGRSLCSDAPCEDSGTTMELTEVQLVKGRCLSASAKGDEHLTH---EDKKNNCEAETSV 769
ND +SL + E + ++ + + + + +S + + + L+ E KKN E + +
Sbjct: 453 NDTQSL--EKLLEITTVPTDMADNSIEEAKLISQAIEESKQLSQAIEESKKNLNEDKVEI 510
Query: 770 LPGDKKNEIEVEMK 783
+ D +++E M+
Sbjct: 511 VDTDTDSDLEEVME 524
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 363 (132.8 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 77/200 (38%), Positives = 123/200 (61%)
Query: 824 EERTPDTYLKDSKQNTG-IFATKAIENVHAEATE--KILEEEMQILDHEYMYLGDEQKKL 880
+++ D + + +QN + K E + E E KI++ ++ + E L E KKL
Sbjct: 1141 KKQVMDNFQMNIEQNNDKLKEDKLDEGAYFEYLEDNKIIDSYIKETNKENEELIKEYKKL 1200
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
++N ++ EM + + LL FG+PYI +P EAEAQC+Y+ N D +++DDSDV +F
Sbjct: 1201 KKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFS 1260
Query: 941 ARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEV 1000
++V KN F+ +K VE Y + IE+ LGL +E+LI ++LL G DYT G+ GIGIVNA+E+
Sbjct: 1261 GKTVIKNFFNKKKTVEVYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEI 1320
Query: 1001 VNAFPEEDGLSKFREWIESP 1020
+ AFP + L ++ + +P
Sbjct: 1321 IKAFPNFEDLKILKDIVSNP 1340
Score = 81 (33.6 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 16/65 (24%), Positives = 37/65 (56%)
Query: 204 VDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRRE 263
++ + LP +Q +L ++E+ +NR K K K + FS++Q++ Y++ + E
Sbjct: 595 INKEIFEKLPLKLQYQILQDIKEEWYTDNRIKAIKSKDDMDVFSQVQLETYVRMIKTDFE 654
Query: 264 IDEVQ 268
I++++
Sbjct: 655 IEKLK 659
Score = 43 (20.2 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 674 ELKLYEPRNSDEKEMLINKPFEKD 697
++K+ E S E E+LINK K+
Sbjct: 659 KIKMAENIQSVEGELLINKDLSKN 682
Score = 37 (18.1 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 753 HLTHEDKKNNCEAETSVLPGDKKNEIEVEMKH 784
+L +D+K + + + V D +E + KH
Sbjct: 333 YLDDDDEKEDIQNKNGVYNNDDIDEQIIRKKH 364
Score = 37 (18.1 bits), Expect = 5.7e-26, Sum P(3) = 5.7e-26
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 97 VDPAVFAALPPSMQHQLL 114
++ +F LP +Q+Q+L
Sbjct: 595 INKEIFEKLPLKLQYQIL 612
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 363 (132.8 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 77/200 (38%), Positives = 123/200 (61%)
Query: 824 EERTPDTYLKDSKQNTG-IFATKAIENVHAEATE--KILEEEMQILDHEYMYLGDEQKKL 880
+++ D + + +QN + K E + E E KI++ ++ + E L E KKL
Sbjct: 1141 KKQVMDNFQMNIEQNNDKLKEDKLDEGAYFEYLEDNKIIDSYIKETNKENEELIKEYKKL 1200
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
++N ++ EM + + LL FG+PYI +P EAEAQC+Y+ N D +++DDSDV +F
Sbjct: 1201 KKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFS 1260
Query: 941 ARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEV 1000
++V KN F+ +K VE Y + IE+ LGL +E+LI ++LL G DYT G+ GIGIVNA+E+
Sbjct: 1261 GKTVIKNFFNKKKTVEVYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEI 1320
Query: 1001 VNAFPEEDGLSKFREWIESP 1020
+ AFP + L ++ + +P
Sbjct: 1321 IKAFPNFEDLKILKDIVSNP 1340
Score = 81 (33.6 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 16/65 (24%), Positives = 37/65 (56%)
Query: 204 VDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRRE 263
++ + LP +Q +L ++E+ +NR K K K + FS++Q++ Y++ + E
Sbjct: 595 INKEIFEKLPLKLQYQILQDIKEEWYTDNRIKAIKSKDDMDVFSQVQLETYVRMIKTDFE 654
Query: 264 IDEVQ 268
I++++
Sbjct: 655 IEKLK 659
Score = 43 (20.2 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 674 ELKLYEPRNSDEKEMLINKPFEKD 697
++K+ E S E E+LINK K+
Sbjct: 659 KIKMAENIQSVEGELLINKDLSKN 682
Score = 37 (18.1 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 753 HLTHEDKKNNCEAETSVLPGDKKNEIEVEMKH 784
+L +D+K + + + V D +E + KH
Sbjct: 333 YLDDDDEKEDIQNKNGVYNNDDIDEQIIRKKH 364
Score = 37 (18.1 bits), Expect = 5.7e-26, Sum P(3) = 5.7e-26
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 97 VDPAVFAALPPSMQHQLL 114
++ +F LP +Q+Q+L
Sbjct: 595 INKEIFEKLPLKLQYQIL 612
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 387 (141.3 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 85/204 (41%), Positives = 124/204 (60%)
Query: 813 IYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMY 872
I+D D + E+ + +K+ ++ F T + A + E ++ E
Sbjct: 703 IFDYDFSEDE-EDNIVENMIKEQEE----FDTFKNTTLSTSAERNVAENAF--VEDE--- 752
Query: 873 LGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTD 932
L ++Q K +R+++ V+ +M E QELL FG+PYI APMEAEAQCA + NLVDG++TD
Sbjct: 753 LFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITD 812
Query: 933 DSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGI 992
DSDVFLFG +YKN+F ++ YVE Y + I K LGL R+ +I +A LLGSDYT G+ G+
Sbjct: 813 DSDVFLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGM 872
Query: 993 GIVNAIEVVNAFPEEDGLSKFREW 1016
G V++IEV+ F L F++W
Sbjct: 873 GPVSSIEVIAEF---GNLKNFKDW 893
Score = 42 (19.8 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 29/115 (25%), Positives = 47/115 (40%)
Query: 490 AGKPVIFPNSPRAHSSISVSDSDWEEGTTER----KGSSLS----DDANAGINPPL--NL 539
A K ++ + A + + DS+ E+G R + +SL + +NA P N
Sbjct: 301 AQKAIVIDDKD-AGALVKQLDSNAEDGDVLRWDDLEDNSLKIVRHESSNATTAPQKRSNR 359
Query: 540 EEGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEA-NLQEAIRRSLLD 593
E D E EWEE PK+ + F + + + +L A +S LD
Sbjct: 360 SEDEGCDSDECEWEE-VELKPKN-VKFVEDFSLKAARLPYMGQSLNNAGSKSFLD 412
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 282 (104.3 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 54/147 (36%), Positives = 91/147 (61%)
Query: 877 QKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDV 936
+ + ++ S + EC E+L+ G+P++ A EAEA CAY+ + VDG +T+D D
Sbjct: 99 KSRSQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDA 158
Query: 937 FLFGARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIG 993
FL+GA++VY+N + K +V+ Y + I+ LGL R+ L+ +A+LLG DY +G+ G+G
Sbjct: 159 FLYGAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVG 218
Query: 994 IVNAIEVVNAFPEEDGLSKFREWIESP 1020
A++++ F + L +F +WIE P
Sbjct: 219 KEQALKLLQIFKGQSLLQRFNQWIEDP 245
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 277 (102.6 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 57/157 (36%), Positives = 92/157 (58%)
Query: 868 HEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVD 927
+E Y + + R S + EC +LL+ G+P++ A EAEA CAY+ VD
Sbjct: 25 NEIRYGASNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVD 84
Query: 928 GVVTDDSDVFLFGARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDY 985
G +T+D DVFL+GA++VY+N + K +++ Y M I++ LG RE LI +A+LLG DY
Sbjct: 85 GCITNDGDVFLYGAQTVYRNFAMNSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDY 144
Query: 986 T-EGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPD 1021
+GI G+G A++++ ++ L +F +W E +
Sbjct: 145 LPKGIPGVGKEQALKLIETLRGQNLLQRFEQWKEQSE 181
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 246 (91.7 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 53/141 (37%), Positives = 83/141 (58%)
Query: 868 HEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVD 927
+E Y + + R S + EC +LL+ G+P++ A EAEA CAY+ VD
Sbjct: 47 NEIRYGASNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVD 106
Query: 928 GVVTDDSDVFLFGARSVYKNIFDDRK------YVETYFMQDIEKDLGLTREKLIRMALLL 981
G +T+D DVFL+GA++VY+N + K +++ Y M I++ LG RE LI +A+LL
Sbjct: 107 GCITNDGDVFLYGAQTVYRNFAMNSKLSFKEPHLDCYTMSSIKEKLGCDRESLIGLAVLL 166
Query: 982 GSDYT-EGISGIGIVNAIEVV 1001
G DY +GI G+G A++++
Sbjct: 167 GCDYLPKGIPGVGKEQALKLI 187
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 271 (100.5 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 52/147 (35%), Positives = 89/147 (60%)
Query: 877 QKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDV 936
+ + ++ S + EC E+L+ G+P++ A EAEA CAY+ + VDG +T+D D
Sbjct: 99 KSRSQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDA 158
Query: 937 FLFGARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIG 993
FL+GA++VY+N + K +V+ Y + I+ LGL R+ L+ +A+LLG DY +G+ G+G
Sbjct: 159 FLYGAQTVYRNFTMNTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVG 218
Query: 994 IVNAIEVVNAFPEEDGLSKFREWIESP 1020
A++++ + L +F +W E P
Sbjct: 219 KEQALKLLQILKGQSLLQRFNQWTEEP 245
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 236 (88.1 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 63/200 (31%), Positives = 103/200 (51%)
Query: 820 QKSAEERTPDTYLKDSKQNT----GIFATKAIENVHA-EATEKILEEEMQILDHEYMYLG 874
++SA P T ++ + +N F + I+ V E L+ + +E Y
Sbjct: 47 KRSAYPLLPMTKIQLNLENLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGA 106
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+ + R S + EC +LL+ G+P++ A EAEA CAY+ VDG +T+D
Sbjct: 107 SNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDG 166
Query: 935 DVFLFGARSVYKNIFDDRK------------YVETYFMQDIEKDLGLTREKLIRMALLLG 982
DVFL+GA++VY+N + K +++ Y M I++ LG RE LI +A+LLG
Sbjct: 167 DVFLYGAQTVYRNFAMNSKSSQKCTWKLKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLG 226
Query: 983 SDYT-EGISGIGIVNAIEVV 1001
DY +GI G+G A++++
Sbjct: 227 CDYLPKGIPGVGKEQALKLI 246
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 261 (96.9 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 51/142 (35%), Positives = 84/142 (59%)
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
++ S + EC +L+ G+P++ A EAEA CAY+ VDG +T+D D FL+G
Sbjct: 103 QKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYG 162
Query: 941 ARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNA 997
A++VY+N + K +V+ Y M I+ LGL R+ L+ +A+LLG DY +G+ G+G A
Sbjct: 163 AQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQA 222
Query: 998 IEVVNAFPEEDGLSKFREWIES 1019
++++ + L +F W E+
Sbjct: 223 LKLIQILKGQSLLQRFNRWNET 244
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 269 (99.8 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 52/140 (37%), Positives = 85/140 (60%)
Query: 882 RNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGA 941
+ S + EC ++L+ G+P++ A EAEA CAY+ VDG +T+D D FL+GA
Sbjct: 104 KTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGA 163
Query: 942 RSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNAI 998
++VY+N + K +V+ Y M I+ LGL R+ L+ +A+LLG DY +G+ G+G A+
Sbjct: 164 QTVYRNFTMNTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQAL 223
Query: 999 EVVNAFPEEDGLSKFREWIE 1018
+++ + L +F +WIE
Sbjct: 224 KLIKTLKGQSLLQRFNQWIE 243
Score = 44 (20.5 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 1404 CFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDA 1463
C S G + V GD NSK T+ L +V NP+V+ ++ A N A
Sbjct: 725 CLQSETG-NWKVLKGDQLFQENSKANTSTLYSVS---------NPIVKTSSVRTGAPNTA 774
Query: 1464 GRASR 1468
+R
Sbjct: 775 SDHNR 779
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 259 (96.2 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 53/154 (34%), Positives = 89/154 (57%)
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
++ S + EC ++L+ G+P++ A EAEA CAY+ + VDG +T+D D FL+G
Sbjct: 103 QKAGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYG 162
Query: 941 ARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNA 997
A++VY+N + K +V+ Y I+ LGL R+ L+ +A+LLG DY +G+ G+G A
Sbjct: 163 AQTVYRNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQA 222
Query: 998 IEVVNAFPEEDGLSKFREWIES----PDPTILGK 1027
++++ + L +F +W E P P + K
Sbjct: 223 LKLIQILKGQSLLQRFTQWSEESCSDPQPLAIKK 256
Score = 49 (22.3 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 1142 RKNNGLE-NGNNRSQKAPK-KAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAEMENPER 1199
+K N LE G + QK K K++E+ +NM S QSQ E F +
Sbjct: 455 QKQN-LELKGKGKKQKCMKIKSKENRQPESDNM-MSFQSQMNLNPTCEVFSKQNSKLSLE 512
Query: 1200 LTPAG 1204
+TP G
Sbjct: 513 ITPDG 517
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 238 (88.8 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 53/122 (43%), Positives = 76/122 (62%)
Query: 890 EMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF 949
E++ + QE L G+P+I +P EAEAQC +E LVDGVV+DDSDV+ FGA+ VY+++F
Sbjct: 467 ELYRDLQEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMF 526
Query: 950 DDRKYVETYFMQ-----DIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAF 1004
+ V+ Y Q D K L RE I +ALL G DY G+ +G + A+E+V+ +
Sbjct: 527 SKNRRVQRYGEQTTANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELVSEY 586
Query: 1005 PE 1006
E
Sbjct: 587 VE 588
Score = 63 (27.2 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 216 MQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRG 275
+++ LV+ RE +M +R + + + + FS Q+Q L+ EI+++ K+
Sbjct: 197 LEIQSLVEKRE-IMRNSRLRPDMIPQDSKSFSNFQMQRLLRRGRLNAEIEQLAKSTT-TS 254
Query: 276 VAGVQTSRI 284
G + +I
Sbjct: 255 TGGYSSDKI 263
Score = 55 (24.4 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 37/159 (23%), Positives = 67/159 (42%)
Query: 329 SANNGASIDKSNFSSTDQSNSVTKLGP--EESR--KSFAD---DVETYLDERGRVRLSKV 381
SA+ + N +D +S + P +E R K F ++++ +++R +R S++
Sbjct: 155 SAHQNDQLVYGNIEDSDSDDSDIIIVPTVKEERISKQFTSRKLEIQSLVEKREIMRNSRL 214
Query: 382 RA----------MGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVP 431
R +M R L+R + EIEQ + TG S +N TG
Sbjct: 215 RPDMIPQDSKSFSNFQMQRLLRRG-RLNAEIEQLAKSTTTSTGGYSSDKINVTGPDGT-- 271
Query: 432 SEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSF 470
S K+ + D+ E ++R+ S + +S+ L F
Sbjct: 272 SHILKYAHS--DEIQEVRPELKRDIDSLYQEPLSMTLDF 308
Score = 40 (19.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 213 PPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQI-QAY-LKTVAFRREIDEVQK 269
P ++ +++ ++ E+L+ + + YQ E + +I Q Y +TV ++E ++ +K
Sbjct: 324 PDDVREEIVDRLEERLIDKKERGYQSKSGMLEAIARKRIRQHYGTETVEDKKEEEKRKK 382
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 260 (96.6 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 51/142 (35%), Positives = 86/142 (60%)
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
++ S + EC ++L+ G+P++ A EAEA CAY+ + VDG +T+D D FL+G
Sbjct: 103 QKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYG 162
Query: 941 ARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNA 997
A++VY+N + K +V+ Y M I+ LGL R+ L+ +A+LLG DY +G+ G+G A
Sbjct: 163 AQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQA 222
Query: 998 IEVVNAFPEEDGLSK-FREWIE 1018
++++ + L + F +W E
Sbjct: 223 LKLIKILKGQSLLQRRFNQWSE 244
Score = 38 (18.4 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 1263 QEVRRSTRSRKPVDYNVDDP 1282
Q++++S++ P + +DP
Sbjct: 817 QKMKQSSQKHSPTQFKKNDP 836
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 236 (88.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 60/168 (35%), Positives = 90/168 (53%)
Query: 846 AIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLP 905
AI + ++ L+ +I D ++ L+RN S S + E + + G+
Sbjct: 78 AIPGIKVPTYKRRLKARFEIADDGVE--PSKETSLKRNMGSEFSCIIKEAKVIASTLGIL 135
Query: 906 YIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI-FDDRKYVETYFMQDIE 964
+ EAEAQCA + +L D + DSD+FLFGA++VY+ I + YV Y M DI+
Sbjct: 136 CLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICLGEGGYVVCYEMDDIK 195
Query: 965 KDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSK 1012
K LGL R LI +ALLLGSDY++G+ G+ A E+V + + L K
Sbjct: 196 KKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDNVILEK 243
Score = 46 (21.3 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 1158 PKKAEESV--SGAQNNMEKSSQSQSRERKVLEKFVLAEMENPER 1199
P+K +E + A+ N+ + + QSR +V L + + PE+
Sbjct: 337 PEKTDEYILPKVAERNLRRFANLQSRSTEVEVNLPLHKPQMPEK 380
Score = 38 (18.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 1149 NGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLE 1187
NGNNR + ++ ++ + N + S + R + E
Sbjct: 279 NGNNRDPERLEEIKQVIDAFMNPKCHQADSNTVSRALAE 317
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 225 (84.3 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 48/153 (31%), Positives = 87/153 (56%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 911
A+ +E+ E E Q+ + G+E +K + V+ + EC+ LL + G+PY+ AP
Sbjct: 98 AKRSERRAEAEKQLQQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPS 157
Query: 912 EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLG 968
EAEA CA + A V T+D D FG+ + +++ + +K ++ + + + ++LG
Sbjct: 158 EAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELG 217
Query: 969 LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
L +E+ + + +LLGSDY E I GIG A++++
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 224 (83.9 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 47/153 (30%), Positives = 87/153 (56%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 911
A+ +E+ E E Q+ + + +E +K + V+ + EC+ LL + G+PY+ AP
Sbjct: 96 AKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS 155
Query: 912 EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLG 968
EAEA CA + A V T+D D FG+ + +++ + +K ++ + + + ++LG
Sbjct: 156 EAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELG 215
Query: 969 LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
L +E+ + + +LLGSDY E I GIG A++++
Sbjct: 216 LNQEQFVDLCILLGSDYCESIRGIGAKRAVDLI 248
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 235 (87.8 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 56/136 (41%), Positives = 79/136 (58%)
Query: 882 RNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGA 941
RNA+ + +C ELL+ G+P + A E EA CA + VD +T DSD FLFGA
Sbjct: 120 RNAKF--TRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGA 177
Query: 942 RSVYKNIFDDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNAIE 999
++V K + + K E Y M DIE LGL R++++ MALL+GSD+ G+ G G A+
Sbjct: 178 KTVIKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALR 237
Query: 1000 VVNAFPEEDGLSKFRE 1015
V F E++ L+K E
Sbjct: 238 FVQLFDEDNVLAKLYE 253
Score = 41 (19.5 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1329 PSIDKDYIERGGGFC-IDDQE--IGQPSVSPCDDP 1360
P K++I+ G FC +D E + +P+ C+ P
Sbjct: 294 PGNKKNHIKDGCNFCLVDSLENCVEKPAGFICECP 328
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 219 (82.2 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 48/153 (31%), Positives = 86/153 (56%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 911
A+ +E+ E E Q+ + +E +K + V+ + EC+ LL + G+PY+ AP
Sbjct: 98 AKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS 157
Query: 912 EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLG 968
EAEA CA + A V T+D D FG+ + +++ + +K ++ + + I ++LG
Sbjct: 158 EAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELG 217
Query: 969 LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
L +E+ + + +LLGSDY E I GIG A++++
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 218 (81.8 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 46/153 (30%), Positives = 86/153 (56%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 911
A+ +E+ E E Q+ + +E +K + V+ + EC+ LL + G+PY+ AP
Sbjct: 98 AKRSERRAEAEKQLQQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS 157
Query: 912 EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLG 968
EAEA CA + A V T+D D FG+ + +++ + +K ++ + + + ++LG
Sbjct: 158 EAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELG 217
Query: 969 LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
L +E+ + + +LLGSDY E + GIG A++++
Sbjct: 218 LNQEQFVDLCILLGSDYCESVRGIGPKRAVDLI 250
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 217 (81.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 48/153 (31%), Positives = 86/153 (56%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 911
A+ +E+ E E Q+ + + E +K + V+ + EC+ LL + G+PY+ AP
Sbjct: 98 AKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS 157
Query: 912 EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLG 968
EAEA CA + A V T+D D FG+ + +++ + +K ++ + + I ++LG
Sbjct: 158 EAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELG 217
Query: 969 LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
L +E+ + + +LLGSDY E I GIG A++++
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 217 (81.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 911
A+ +E+ E E Q+ + E +K + V+ + EC+ LL + G+PY+ AP
Sbjct: 98 AKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS 157
Query: 912 EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLG 968
EAEA CA + A V T+D D FG+ + +++ + +K ++ + + I ++LG
Sbjct: 158 EAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELG 217
Query: 969 LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
L +E+ + + +LLGSDY E I GIG A++++
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 217 (81.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 65/234 (27%), Positives = 109/234 (46%)
Query: 874 GDEQ--KKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
GD+ +K R V+ E E +ELL + G+PY+ AP EAEAQCA + A V T
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 932 DDSDVFLFGARSV--YKNIFDDRKYVETYFMQD-IEKDLGLTREKLIRMALLLGSDYTEG 988
+D D FG+ + Y + RK F D + + L + + I + +LLG DY E
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCES 237
Query: 989 ISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGAXXXXXXXXXXXXXV 1048
I GIG AIE++N + + + + ++S T+ ++ + +
Sbjct: 238 IKGIGPKRAIELINTYRD---IETILDNLDSSKYTVPENWNYKVARELFIEPEVADADSI 294
Query: 1049 N--YAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKH--TQLRLEAFY 1098
+ + + G+ +F QF+E++ KK+ K TQ+RL++F+
Sbjct: 295 DLKWVEPDEEGLVKFLCGDRQFNEER----VRNGAKKLMKSKQAQTQVRLDSFF 344
Score = 46 (21.3 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1152 NRSQKAPKKAEESVSGAQNNMEKSS 1176
N + A +KAEE+ A N K+S
Sbjct: 352 NATNAAKRKAEEAKKSANNKKAKTS 376
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 217 (81.4 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 51/155 (32%), Positives = 86/155 (55%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQ--KKLERNAESVSSEMFAECQELLQMFGLPYIIA 909
A+ TE+ E E + E G+E +K + V+ + EC++LL + G+PY+ A
Sbjct: 98 AKRTERRSEAEKHL--QEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEA 155
Query: 910 PMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKD 966
P EAEA CA + A V T+D D FG+ + +++ + +K ++ + + + +D
Sbjct: 156 PGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQD 215
Query: 967 LGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
LGLT E+ + + +LLG DY E I GIG A+E++
Sbjct: 216 LGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELI 250
Score = 43 (20.2 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 1100 FNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPK 1159
FNE + KR+ K+ +G T + G S RK+ + G ++ A
Sbjct: 316 FNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSAKRKEPETKGSAKKKAKTNSATA 375
Query: 1160 K 1160
K
Sbjct: 376 K 376
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 210 (79.0 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 75/279 (26%), Positives = 125/279 (44%)
Query: 845 KAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGL 904
K +E AEA EK+L + + + E + K + V+ + EC++LL + G+
Sbjct: 99 KRVER-RAEA-EKLLAQAQEAGEQENI------DKFSKRLVKVTKQHNEECKKLLSLMGV 150
Query: 905 PYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQ 961
PYI AP EAEA CA + A V T+D D FG + +++ + +K ++ +
Sbjct: 151 PYIEAPCEAEASCAALVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFS 210
Query: 962 DIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPD 1021
I +D+ LT ++ I + +LLG DY I GIG AI+++ + + + + + P
Sbjct: 211 RILQDMELTHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPA 270
Query: 1022 PTILGKFDVQTGAXXXXXXXXXXXXXVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNM 1081
P + G + + + G+ +F + QF ED+
Sbjct: 271 PEDW-LYKEARGLFLEPEVVDGTSVDLKWNEPDEDGLIQFMCAEKQFSEDR----IRNGC 325
Query: 1082 KKIFMDKH--TQLRLEAFYTFNERFAKIRSKRIKKAVKG 1118
KKI + TQ RL+ F+T I SKR + KG
Sbjct: 326 KKITKSRQGSTQGRLDTFFTVT---GSISSKRKEPETKG 361
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 208 (78.3 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 54/172 (31%), Positives = 94/172 (54%)
Query: 833 KDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMF 892
K + +G A ++ E AEA EK+LE + + E + +K + V+ +
Sbjct: 88 KPPQMKSGELAKRS-ER-RAEA-EKLLEAAEEAGEVENI------EKFTKRLVKVTKQHN 138
Query: 893 AECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--D 950
EC++LL + G+PY+ AP EAEA CA + A V T+D D FG + +++ +
Sbjct: 139 EECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASE 198
Query: 951 DRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
+K ++ + + + +D+G+T E+ + + +LLGSDY E I GIG AI+++
Sbjct: 199 AKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLI 250
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 206 (77.6 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 76/298 (25%), Positives = 135/298 (45%)
Query: 833 KDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMF 892
K + +G A ++ E AEA EK+LE + + E + +K + V+ +
Sbjct: 88 KPPQMKSGELAKRS-ER-RAEA-EKLLEAAEEAGEVENI------EKFNKRLVKVTKQHN 138
Query: 893 AECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--D 950
EC++LL + G+PY+ AP EAEA CA + A V T+D D FG + +++ +
Sbjct: 139 EECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASE 198
Query: 951 DRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDG 1009
+K ++ + + + +D+G+ E+ + + +LLGSDY E I GIG AI+++ +
Sbjct: 199 AKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEE 258
Query: 1010 LSKFREWIESPDP-TILGKFDVQTGAXXXXXXXXXXXXXVNYAKNSVGGVSEFDESISQF 1068
+ + + P P L K Q + + + G+ F QF
Sbjct: 259 IIDNIDLKKYPIPENWLHKEARQL--FLEPEVIDADITELKWTEPDEEGLVAFMCGEKQF 316
Query: 1069 DEDKQSAEYSQNMKKIFMDKH--TQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQS 1124
ED+ KK+ ++ TQ RL+ F+ + + K ++ KG T +S
Sbjct: 317 SEDR----IRNGAKKLAKNRQGSTQGRLDDFFKVTGSISSTKRKEVES--KGSTKKKS 368
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 201 (75.8 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 52/148 (35%), Positives = 78/148 (52%)
Query: 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSD 935
E+ K ER VS E E Q+LL + G+PYIIAP EAEAQCA + V ++D D
Sbjct: 120 EKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMD 179
Query: 936 VFLFGARSVYKNI-FDDRKYVETYFMQDIE---KDLGLTREKLIRMALLLGSDYTEGISG 991
+ + +++ F + K E D E + L LT E+ + + ++LG DY E I G
Sbjct: 180 TLCYRTPFLLRHLTFSEAKK-EPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRG 238
Query: 992 IGIVNAIEVVNAFPEEDGLSKFREWIES 1019
+G V A++++ + K E+IES
Sbjct: 239 VGPVTALKLIKT---HGSIEKIVEFIES 263
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 203 (76.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 56/162 (34%), Positives = 88/162 (54%)
Query: 854 ATEKILEEEMQILDHEYMYLGDEQKKLERNAE-----SVSSEMFAECQELLQMFGLPYII 908
+TE+ +E Q L DE KK + + V+ EM + L+ G+ I+
Sbjct: 87 STEQKRKERRQEAFELGKKLWDEGKKSQAIMQFSRCVDVTPEMAWKLIIALREHGIESIV 146
Query: 909 APMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIE--KD 966
AP EA+AQ Y+E N++DG++T+DSD+ +FGA++V + D T DI +D
Sbjct: 147 APYEADAQLVYLEKENIIDGIITEDSDMLVFGAQTVLFKM-DGFGNCITIRRNDIANAQD 205
Query: 967 LGLTR--EKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPE 1006
L L EKL MA+ G DYT+G++G+G+ A+ + +PE
Sbjct: 206 LNLRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRYLQKYPE 247
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 197 (74.4 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 62/231 (26%), Positives = 106/231 (45%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E K E+ V+ E E ++LLQ+ G+P + AP EAEAQCA + V ++D
Sbjct: 122 EEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDM 181
Query: 935 DVFLFGARSVYKNI-FDD-RKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISG 991
D + + +++ F + RK ++ +D L +T+E+ I + +LLG DY E I G
Sbjct: 182 DTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKG 241
Query: 992 IGIVNAIEVVNAFPEEDGLSKFREWIESPDP--TILGKFDVQTGAXXXXXXXXXXXXXVN 1049
IG A +++ E L EWI++ T+ + +N
Sbjct: 242 IGQATAFKLIK---EHGSLDNIVEWIKNNKTKYTLPENWPYDEARQLFMNPEVTNASEIN 298
Query: 1050 --YAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFY 1098
+ + V G+ EF F ED+ + ++ +KK + Q RL+ F+
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRIRSG-AEKLKK-GLKGGVQGRLDGFF 347
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 203 (76.5 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 48/142 (33%), Positives = 74/142 (52%)
Query: 889 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI 948
+ + +C+ LL G+ + P EAEA A++ LVDGV++ DSD F +GA VY+N
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 949 FDDRK--------YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNAIE 999
+ V+ Y M++I + + K+I MALL G DY +GI GIG ++
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLK 238
Query: 1000 VVNAFPEEDGLSKFREWIESPD 1021
+ N + E + L + R W D
Sbjct: 239 LFNKYKESEILDRLRNWRAETD 260
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 212 (79.7 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 48/137 (35%), Positives = 75/137 (54%)
Query: 889 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI 948
+ + +C+ LL G+ + P EAEA CA++ LVDGV++ DSD F +GA VY+N
Sbjct: 120 NHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNF 179
Query: 949 FDDRK--------YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNAIE 999
+ V+ Y M++I + ++K+I MALL G DY +GI GIG ++
Sbjct: 180 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLK 239
Query: 1000 VVNAFPEEDGLSKFREW 1016
+ N + E + L + R W
Sbjct: 240 LFNKYKETEILDRMRSW 256
Score = 41 (19.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 1138 SRKKRKNNGLENGNNRSQKAPKKAEESVSGA-QNNMEKSSQSQSRERK 1184
+RKK+ + EN N PK+ + + N Q R+++
Sbjct: 483 TRKKKTASEEENKENEPNSKPKRVVRKIKAQPEENQPLLHQFLGRKKE 530
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 196 (74.1 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 49/151 (32%), Positives = 82/151 (54%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
++ +K R V+ E AEC++LL++ G+PYI AP EAEAQCA + A V ++D
Sbjct: 121 EDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDM 180
Query: 935 DVFLFGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISG 991
D F A + +++ F +++ ++ + + LG+ R + I + +LLG DY E I
Sbjct: 181 DTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIPK 240
Query: 992 IGIVNAIEVVNAFPEEDGLSKFREWIESPDP 1022
+G A++++ + L K E IE DP
Sbjct: 241 VGPNTALKLIR---DHGTLEKVVESIEK-DP 267
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 193 (73.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 61/246 (24%), Positives = 116/246 (47%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E +K + +V+ + +C +LL + G+P + AP EAEAQCA + ++D
Sbjct: 122 EEVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDM 181
Query: 935 DVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISG 991
D G+ + + +F + +K + + +Q + + LGLT+++ I +++LLG DY + I G
Sbjct: 182 DSLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDSIKG 241
Query: 992 IGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGAXXXXXXXXXXXXXVNYA 1051
IG AIE++ + + K + + P P +V+ +
Sbjct: 242 IGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFFPYPEVRELFKNPNVIPADQLPPFQWK 301
Query: 1052 KNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKR 1111
V G+++F F D + A+ + +KK F + Q R+++F T ++ K+
Sbjct: 302 DPDVEGLNKFLVEEMGFS-DVRVAQGIEKLKK-FKNTSVQSRMDSFITVIKKPEDPNDKK 359
Query: 1112 IKKAVK 1117
KK K
Sbjct: 360 -KKVTK 364
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 191 (72.3 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 49/168 (29%), Positives = 90/168 (53%)
Query: 847 IENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESV--SSEMFAECQ-ELLQMFG 903
++N H E + E +++ + G+ +E +SV + EM A+C + ++
Sbjct: 84 VKN-HTETRRRKKRLENEMIAKKLWSAGNRYNAMEYFQKSVDITPEM-AKCIIDYCKLHS 141
Query: 904 LPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETY---FM 960
+PYI+AP EA+ Q Y+E L+ G++++DSD+ +FG +++ + D K +E F
Sbjct: 142 IPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFGCKTLITKLNDQGKALEISKDDFS 201
Query: 961 QDIEK-DLG-LTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPE 1006
E LG L+ ++ + L G DYT GI +G+V A+++V + E
Sbjct: 202 ALPENFPLGELSEQQFRNLVCLAGCDYTSGIWKVGVVTAMKIVKRYSE 249
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 186 (70.5 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 40/130 (30%), Positives = 75/130 (57%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
++ +K R V+ E EC++LL++ G+PYIIAP EAEAQCA + A V ++D
Sbjct: 121 EDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDM 180
Query: 935 DVFLFGARSVYKNI-FDD-RKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISG 991
D F + + +++ F + RK ++ + + + L + R++ + + +LLG DY + I
Sbjct: 181 DTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPIPK 240
Query: 992 IGIVNAIEVV 1001
+G A++++
Sbjct: 241 VGPSTALKLI 250
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 184 (69.8 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 44/133 (33%), Positives = 74/133 (55%)
Query: 874 GD--EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
GD E +K ER V+ + E + LL + G+P + AP EAEAQCA++ A V G VT
Sbjct: 118 GDVKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVT 177
Query: 932 DDSDVFLFGARSVYKNIFDD--RKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEG 988
+D D FG+ + ++ +K ++ + + +++ L+ E+ I + +LLG DY
Sbjct: 178 EDMDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGT 237
Query: 989 ISGIGIVNAIEVV 1001
I G+G A+E++
Sbjct: 238 IRGVGPKKAVELI 250
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 194 (73.4 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 48/160 (30%), Positives = 91/160 (56%)
Query: 853 EATEKILEEEMQILDHEYMYLGDEQKKLE--RNAESVSSEMFAECQELL-QMFGLPYIIA 909
E+ + +E + + G+++ ++ + ++ EM A+C ++ G+ YI+A
Sbjct: 89 ESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEM-AKCIICYCKLNGIRYIVA 147
Query: 910 PMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETY---FMQDIEK- 965
P EA++Q Y+E N+V G++++DSD+ +FG R + + D + +E F++ +K
Sbjct: 148 PFEADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITKLNDYGECLEICRDNFIKLPKKF 207
Query: 966 DLG-LTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAF 1004
LG LT E++I M L G DYT GI +G++ A+++V F
Sbjct: 208 PLGSLTNEEIITMVCLSGCDYTNGIPKVGLITAMKLVRRF 247
Score = 37 (18.1 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 1060 EFDESISQFDEDKQSAE 1076
E E +S +ED++++E
Sbjct: 509 EVSEVVSDIEEDRKNSE 525
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 175 (66.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 41/130 (31%), Positives = 73/130 (56%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
++ +K + V+ + +C+ LL++ G+P + A EAEAQCA + + V GV ++D
Sbjct: 122 EDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDM 181
Query: 935 DVFLFGARSVYKNIFD--DRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISG 991
D FGA +++ D RK V + + I ++L LT ++ I + +L G DY + I G
Sbjct: 182 DSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRG 241
Query: 992 IGIVNAIEVV 1001
IG A++++
Sbjct: 242 IGGQTALKLI 251
>TAIR|locus:2098443 [details] [associations]
symbol:AT3G28770 "AT3G28770" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR HSSP:P01096 eggNOG:NOG12793
EMBL:AP002057 InterPro:IPR009605 Pfam:PF06746 IPI:IPI00529324
RefSeq:NP_189519.1 UniGene:At.42736 ProteinModelPortal:Q9LH98
PaxDb:Q9LH98 PRIDE:Q9LH98 EnsemblPlants:AT3G28770.1 GeneID:822509
KEGG:ath:AT3G28770 TAIR:At3g28770 OMA:SKNEILM
ProtClustDB:CLSN2912834 Genevestigator:Q9LH98 Uniprot:Q9LH98
Length = 2081
Score = 139 (54.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 128/633 (20%), Positives = 242/633 (38%)
Query: 282 SRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNF 341
S+ +SEA+ E SS T V T S + E + E +NG + N
Sbjct: 185 SKSSSEASSE---ESSSTEHNNVTTGSNMVETNGENSESTQEKGDGVEGSNGGDVSMENL 241
Query: 342 SSTD-----QSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNL 396
+ N+V + G E++++ ++VE+ ++ + + I ++L+
Sbjct: 242 QGNKVEDLKEGNNVVENG--ETKENNGENVESNNEKEVEGQGESIGDSAIE--KNLESKE 297
Query: 397 EMMKEIEQERPNGNNIT-GAGSMLTLNETGT---SKAVPSEKRKFIGTSLDDTNESVSSI 452
++ E+E + +G+++T G N T K V + + ++ ES +
Sbjct: 298 DVKSEVEAAKNDGSSMTENLGEAQGNNGVSTIDNEKEVEGQGESIEDSDIEKNLESKEDV 357
Query: 453 ERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRAHSSISVSDSD 512
+ ++ +G S+ ++ NN G N +++ + D
Sbjct: 358 KSEVEAAKNAGSSMTGKLEEAQRNNGVSTNETMNSENKGSGES-TNDKMVNATTNDEDHK 416
Query: 513 WE--EGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFPAES 570
E E T E G S+ + NLE ++ES ++ E + L A
Sbjct: 417 KENKEETHENNGESVKGE---------NLENKAGNEES-MKGENLENKVGNEELKGNASV 466
Query: 571 EKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHN-KCENLGENACDGTWLYDREN-- 627
E +N + +E +RS +V + K N + E++G++ D + L ++E+
Sbjct: 467 EAKTNNESSKEEKREESQRSN-EVYMNKETTKGENVNIQGESIGDSTKDNS-LENKEDVK 524
Query: 628 -NMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGREL--KLYEPRNSD 684
+D G S ++H+ + +G+ D N + IG+ ++ K E +D
Sbjct: 525 PKVDANESDGNSTKERHQE-AQVNNGVSTED-----KNLDNIGADEQKKNDKSVEVTTND 578
Query: 685 EKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPC---EDSGTTMELTEVQLVKG 741
K E + E + + D + L D ++ T++E Q KG
Sbjct: 579 GDHTK-EKREETQGNNGESVKNENLENKEDKKELKDDESVGAKTNNETSLEEKREQTQKG 637
Query: 742 RCLSASAK-GDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDT 800
S ++K D + D +N E E V GD N+ +E K D +E + S
Sbjct: 638 HDNSINSKIVDNKGGNAD--SNKEKEVHV--GDSTNDNNMESKEDTKSEVEVKKNDGSSE 693
Query: 801 SIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTG-IFA--TKAIENVHAEATEK 857
K + S+ D +E K ++ + D D KQ I+ +K ++V A+ +K
Sbjct: 694 KGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSVEAKGKKK 753
Query: 858 ILEEEMQILDHEYMYLGDEQKKLERNAESVSSE 890
+E + +E E+ ES E
Sbjct: 754 ESKENKKTKTNENRVRNKEENVQGNKKESEKVE 786
Score = 101 (40.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 90/443 (20%), Positives = 164/443 (37%)
Query: 1049 NYAKNSVGGVSEFDESISQFDEDKQS------AEYSQNMKKIFM------DKHTQLRLEA 1096
N K S GG E ES S+ E++Q A+ ++ +I M D H+ + ++
Sbjct: 1351 NTTKQS-GGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADS 1409
Query: 1097 FYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQK 1156
+ NE + S+ + + + ++ Q+ +K K + + +N +S
Sbjct: 1410 DESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTEQSG- 1468
Query: 1157 APKKAEESVSGAQNNMEKS---SQSQSRERKVLEKFVLAEMENPERLTPAGGGRNANNVF 1213
K++ ES S N +KS +Q +S E K E + A+ + G + N
Sbjct: 1469 GKKESMESESKEAENQQKSQATTQGESDESKN-EILMQADSQADTHANSQGDSDESKNEI 1527
Query: 1214 XXXXXXXXXXXXXXXXXXXLCAEQSETXXXXXXXXXXTQEYYSEKFEGQQEVRRSTRSRK 1273
Q+++ ++ + + Q ++ S K
Sbjct: 1528 LMQADSQADSQTDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQAKIGESLEDNK 1587
Query: 1274 PVDYNVDDPEIADVGKILXXXXXXXXXXAKQDSVHGVTGEASADYSRKKQHRADDPSIDK 1333
V D+ + +VGK ++S G T E K+ ++ S D
Sbjct: 1588 -VKGKEDNGD--EVGK--ENSKTIEVKGRHEESKDGKTNENGG-----KEVSTEEGSKDS 1637
Query: 1334 DYIERGGG---FCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVA 1390
+ +ER GG + E G+ + E +KD K+ G E+ T+E
Sbjct: 1638 NIVERNGGKEDSIKEGSEDGKTVEINGGEELSTEEGSKDG-KIEEGKEGKENSTKEGSKD 1696
Query: 1391 AK-DPVVTGESPSTCFDSSDGVHCDV-GLGDSTTSSNSKEATNGLENVGRT--DTFDTEP 1446
K + + G+ ST S DG ++ G ++T SK+ G + G+ D+ E
Sbjct: 1697 DKIEEGMEGKENSTKESSKDGKINEIHGDKEATMEEGSKDG--GTNSTGKDSKDSKSVEI 1754
Query: 1447 NPVVQNATSTDSARNDAGRASRG 1469
N V ++ DS D + G
Sbjct: 1755 NGVKDDSLKDDSKNGDINEINNG 1777
Score = 72 (30.4 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 37/137 (27%), Positives = 61/137 (44%)
Query: 1052 KNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKR 1111
K+S V +F ++ D K S E S KK +K + E T N +K + K
Sbjct: 889 KSSTKEVRDFANNMD-IDVQKGSGE-SVKYKKD--EKKEGNKEENKDTINTS-SKQKGKD 943
Query: 1112 IKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNN 1171
KK K S +D + V+ KK+++N E +S+ + K EE+ +
Sbjct: 944 KKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKET--TKSENSKLK-EENKDNKEKK 1000
Query: 1172 MEKSSQSQSRERKVLEK 1188
+ S S++RE+K E+
Sbjct: 1001 ESEDSASKNREKKEYEE 1017
Score = 67 (28.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 26/138 (18%), Positives = 56/138 (40%)
Query: 1062 DESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITG 1121
+ + + +++K+ S+N K +K + + E+ + ++ K + K K
Sbjct: 968 NNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAK 1027
Query: 1122 SQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSR 1181
+ D +E +K K E +R KA KK EE+ ++ KS + + +
Sbjct: 1028 KEKKKSQDKKREEKDSEERKSKK---EKEESRDLKAKKKEEETKEKKESENHKSKKKEDK 1084
Query: 1182 ERKVLEKFVLAEMENPER 1199
+ K + E + E+
Sbjct: 1085 KEHEDNKSMKKEEDKKEK 1102
Score = 63 (27.2 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 30/132 (22%), Positives = 61/132 (46%)
Query: 1059 SEFDESISQFDEDKQSAEY-SQNM-KKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAV 1116
S+ E E K+S + S+N KK + +K ++ + EA + K +S+ K+
Sbjct: 987 SKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEA------KKEKKKSQDKKREE 1040
Query: 1117 KGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAE----ESVSGAQNNM 1172
K +S +++ +K +++ E+ N++S+K K E +S+ ++
Sbjct: 1041 KDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKK 1100
Query: 1173 EKSSQSQSRERK 1184
EK +S+ RK
Sbjct: 1101 EKKKHEESKSRK 1112
Score = 63 (27.2 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 33/136 (24%), Positives = 54/136 (39%)
Query: 1060 EFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSK------RIK 1113
E + S+ EDK+ E +++MKK K + E+ E K K K
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKK 1131
Query: 1114 KAVKGITG-SQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNM 1172
K K SQ + L+ + K + K+ E +++SQK +E S
Sbjct: 1132 KEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQK 1191
Query: 1173 EKSSQSQSRERKVLEK 1188
+K + + E K L+K
Sbjct: 1192 KKEKEMKESEEKKLKK 1207
Score = 59 (25.8 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 35/151 (23%), Positives = 65/151 (43%)
Query: 1049 NYAKNSVGGVSEFDESISQFDEDKQS------AEYSQNMKKIFM------DKHTQLRLEA 1096
N K S GG E ES S+ E++Q A+ ++ +I M D H+ + ++
Sbjct: 1240 NTTKQS-GGKKESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQADS 1298
Query: 1097 FYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQK 1156
+ NE + S+ + + + ++ Q+ +K K + + +N +S
Sbjct: 1299 DESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKNKPKDDKKNTTKQSG- 1357
Query: 1157 APKKAEESVSGAQNNMEKS---SQSQSRERK 1184
K++ ES S N +KS +Q+ S E K
Sbjct: 1358 GKKESMESESKEAENQQKSQATTQADSDESK 1388
Score = 58 (25.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 1129 DDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERK 1184
DD E +K +KK + N ++ K EE+V G + EK + + +E K
Sbjct: 742 DDKSVE-AKGKKKESKENKKTKTNENRVRNK--EENVQGNKKESEKVEKGEKKESK 794
Score = 55 (24.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 30/142 (21%), Positives = 62/142 (43%)
Query: 1062 DESISQFDEDKQSAEYSQNMKKIFMD------KHTQLRLEAFYTFNERFAKIR-SKRIKK 1114
D++ ++ EDK + SQ++K + + K + + E + + K K+ KK
Sbjct: 1125 DQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKK 1184
Query: 1115 AVKGITGSQSLLLMDDAGQEVSKSRKKRKNN-GLENGNNRSQKAPKKAEESVSGAQNNME 1173
+ K + + + +++ K+ + RK +E N+ QK KK + + N
Sbjct: 1185 SSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEE--NKKQKETKKEKNKPKDDKKNTT 1242
Query: 1174 KSS-------QSQSRERKVLEK 1188
K S +S+S+E + +K
Sbjct: 1243 KQSGGKKESMESESKEAENQQK 1264
Score = 55 (24.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 28/143 (19%), Positives = 60/143 (41%)
Query: 1070 EDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIK--KAVKGITGSQSLLL 1127
++K+ E S++ KK DK +LE + ++ K K+ + K VK + +
Sbjct: 1100 KEKKKHEESKSRKKE-EDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKE 1158
Query: 1128 MDDAGQEVSKSRKKRKNNGLENGNNRSQK--APKKAEESVSGAQNNMEKSSQSQSRERKV 1185
++ + K + N ++ +S K KK +E + ++K+ + + ++ V
Sbjct: 1159 NEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSV 1218
Query: 1186 LEKFVLAEMENPERLTPAGGGRN 1208
E E + E+ P +N
Sbjct: 1219 EENKKQKETKK-EKNKPKDDKKN 1240
Score = 54 (24.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1137 KSRKKRKNNGLENGNNRSQKAPKKAE--ESVSGAQNNMEKS---SQSQSRERK 1184
K KK KN ++ N ++++ K E ES S N +KS +Q+ S E K
Sbjct: 1225 KETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESK 1277
Score = 50 (22.7 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 1136 SKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAEME 1195
+ + KK++ + E NN +K +E+ ++N+ K ++E+K E E
Sbjct: 953 NSNMKKKEEDKKEYVNNELKKQEDNKKETTK-SENSKLKEENKDNKEKKESEDSASKNRE 1011
Query: 1196 NPE 1198
E
Sbjct: 1012 KKE 1014
Score = 48 (22.0 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 29/148 (19%), Positives = 63/148 (42%)
Query: 1302 AKQDSVHGVTGEASADYSRKKQ----HRADDPSIDKDYIE-RGGGFCIDDQEIGQPSVSP 1356
+K ++GV ++ D S+ + + S+ + E +G + + +P+
Sbjct: 1749 SKSVEINGVKDDSLKDDSKNGDINEINNGKEDSVKDNVTEIQGNDNSLTNSTSSEPNGDK 1808
Query: 1357 CDDPFLEAEITKDYMKMGGGFCHDES-----ETREDQVAAKDPVV--TGESPSTCFDSSD 1409
D + + + M+ GG D + ET+E V+ + + G + ++ + +
Sbjct: 1809 LDTN--KDSMKNNTMEAQGGSNGDSTNGETEETKESNVSMNNQNMQDVGSNENSMNNQTT 1866
Query: 1410 GVHCDVGLGDSTTSSN-SKEATNGLENV 1436
G D+ + T SN SKE T+ + N+
Sbjct: 1867 GTGDDIISTTTDTESNTSKEVTSFISNL 1894
Score = 48 (22.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 1112 IKKAVKGITGSQSLLLMDDA----GQEVSKSRKKRKNNGLE-----NGNNRSQKAPKKAE 1162
+K V I G+ + L + G ++ ++ KNN +E NG++ + + + E
Sbjct: 1782 VKDNVTEIQGNDNSLTNSTSSEPNGDKLDTNKDSMKNNTMEAQGGSNGDSTNGETEETKE 1841
Query: 1163 ESVSGAQNNMEKSSQSQS 1180
+VS NM+ +++
Sbjct: 1842 SNVSMNNQNMQDVGSNEN 1859
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 181 (68.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 45/155 (29%), Positives = 83/155 (53%)
Query: 857 KILEEEMQILDHEYMYLGDEQKKLER--NAESVSSEMFAECQELLQMFGLPYIIAPMEAE 914
++ +E + L +Y+ + + ++ A V+S+M L + YI+AP EA+
Sbjct: 93 QLKRQEAKELAEKYIAANNRKLAYKQFMKAAYVTSQMAKSVMCELDNLSIKYIVAPYEAD 152
Query: 915 AQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQ-DIEKDLGLTR-- 971
Q Y+E +VDG++++DSD+ +FG + + + DD VE + D K++
Sbjct: 153 PQMVYLEKMGIVDGILSEDSDLLIFGCKKLITKLKDDGTCVEINRDKFDKVKEIPYLNQY 212
Query: 972 --EKLIRMALLLGSDYTEGISGIGIVNAIEVVNAF 1004
E+L +A+L G DYT+G+ GIG+ A ++V +
Sbjct: 213 NMEQLRLVAMLSGCDYTKGVPGIGLKTAFQLVRKY 247
Score = 46 (21.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 1090 TQLRLEAFYTFNER--------FAKIRSK-RIKKAVKGITGSQSLLLMDDAGQEVSKSRK 1140
T L+ E+FY+ N + A I + R + A+ +S+L + ++V+K+
Sbjct: 349 TVLKSESFYSPNSQQHNNKQGSIATIAHRSRSEGAISQAGNGKSILDLLSISKKVTKTTS 408
Query: 1141 KRKNNGLENGNNRSQKAPKK 1160
N+ +E+ NN+ K P++
Sbjct: 409 S--NSQVES-NNKQMKTPER 425
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 13/67 (19%), Positives = 27/67 (40%)
Query: 1132 GQEVSKSRKKRKNNGLEN-GNNRS----QKAPKKAEESVSGAQNNMEKSSQSQSRERKVL 1186
G + + + R + GN +S KK ++ S + Q ++ ERK +
Sbjct: 369 GSIATIAHRSRSEGAISQAGNGKSILDLLSISKKVTKTTSSNSQVESNNKQMKTPERKTI 428
Query: 1187 EKFVLAE 1193
++ + E
Sbjct: 429 KRSIRIE 435
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 188 (71.2 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 72/323 (22%), Positives = 136/323 (42%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E KK V+ + E ++LL + G+P I AP EAE+QCA++ NL T+D+
Sbjct: 123 EEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDA 182
Query: 935 DVFLFGARSVYKNIFDD-------------RKYVETYF-MQDIEKDLGLTREKLIRMALL 980
D +FG + + +N+ + R Y+ T ++ + K L LT ++ I +L
Sbjct: 183 DALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCIL 242
Query: 981 LGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGAXXXXXX 1040
G DY + I GIG A ++ E + + K IE+ D K+ V +
Sbjct: 243 CGCDYCDTIKGIGSKTAYNLIK---EYNCIEKI---IENIDQN---KYQVPSNFRFQEAR 293
Query: 1041 XXXXXXXVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTF 1100
V K + + D + Q +E K N ++ + + L+A
Sbjct: 294 KSFINPNV-LPKEDI----KIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVT 348
Query: 1101 NERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKK 1160
+R R+ T + L++++ +E + +K K N+ + +K
Sbjct: 349 TQR-------RLDNFFTACTKKSTKLIVEETKKEQTLPARKGKKRPTAGDKNKQKAVKRK 401
Query: 1161 AEESVSGAQNNMEKSSQSQSRER 1183
E++ + + M++ ++S E+
Sbjct: 402 IEQANANGHHKMKEENKSVDNEK 424
Score = 42 (19.8 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 506 ISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLS 565
I++ DS+ T G + S + ++ + L E G+ + ++ P S L
Sbjct: 44 IAIRDSEQYGNLTNESGETTSHISGL-MSRSIRLMENGL--KPIYVFDGAPPELKGSELE 100
Query: 566 FPAE----SEKTVSNIEEEANLQEAIRRS 590
E +E+ + +EE NL+E ++S
Sbjct: 101 KRGEKRQKAEELLKKAKEEGNLEEIKKQS 129
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 26/147 (17%), Positives = 55/147 (37%)
Query: 1304 QDSVHGVTGEASADYSRK-KQHRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFL 1362
+D + V E + D + + D +KD + D E + D F
Sbjct: 438 EDGIKSVDDEKNLDDEKNLDDEKNKDDEKNKDDEKNKDDEKNKDDEKNKDDEKKSLDNFS 497
Query: 1363 EAEITKDYMKMGGGFCHDESETREDQVAAKD-PVVTGE-SPSTCFDSSDGVHCDVGLGDS 1420
D G +E + +D+ + P + G+ S ++ D + D+ ++
Sbjct: 498 SNLFDSDKESESGNIIKNEKQNMDDEKINDNLPSLFGDHSRIRHTENKDNIS-DINNNNN 556
Query: 1421 ---TTSSNSKEATNGLENVGRTDTFDT 1444
++S+N+ + N +V TF++
Sbjct: 557 NNNSSSNNNNISNNHFNSVSSNSTFNS 583
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 188 (71.2 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 72/323 (22%), Positives = 136/323 (42%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E KK V+ + E ++LL + G+P I AP EAE+QCA++ NL T+D+
Sbjct: 123 EEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDA 182
Query: 935 DVFLFGARSVYKNIFDD-------------RKYVETYF-MQDIEKDLGLTREKLIRMALL 980
D +FG + + +N+ + R Y+ T ++ + K L LT ++ I +L
Sbjct: 183 DALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCIL 242
Query: 981 LGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGAXXXXXX 1040
G DY + I GIG A ++ E + + K IE+ D K+ V +
Sbjct: 243 CGCDYCDTIKGIGSKTAYNLIK---EYNCIEKI---IENIDQN---KYQVPSNFRFQEAR 293
Query: 1041 XXXXXXXVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTF 1100
V K + + D + Q +E K N ++ + + L+A
Sbjct: 294 KSFINPNV-LPKEDI----KIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVT 348
Query: 1101 NERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKK 1160
+R R+ T + L++++ +E + +K K N+ + +K
Sbjct: 349 TQR-------RLDNFFTACTKKSTKLIVEETKKEQTLPARKGKKRPTAGDKNKQKAVKRK 401
Query: 1161 AEESVSGAQNNMEKSSQSQSRER 1183
E++ + + M++ ++S E+
Sbjct: 402 IEQANANGHHKMKEENKSVDNEK 424
Score = 42 (19.8 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 506 ISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLS 565
I++ DS+ T G + S + ++ + L E G+ + ++ P S L
Sbjct: 44 IAIRDSEQYGNLTNESGETTSHISGL-MSRSIRLMENGL--KPIYVFDGAPPELKGSELE 100
Query: 566 FPAE----SEKTVSNIEEEANLQEAIRRS 590
E +E+ + +EE NL+E ++S
Sbjct: 101 KRGEKRQKAEELLKKAKEEGNLEEIKKQS 129
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 26/147 (17%), Positives = 55/147 (37%)
Query: 1304 QDSVHGVTGEASADYSRK-KQHRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFL 1362
+D + V E + D + + D +KD + D E + D F
Sbjct: 438 EDGIKSVDDEKNLDDEKNLDDEKNKDDEKNKDDEKNKDDEKNKDDEKNKDDEKKSLDNFS 497
Query: 1363 EAEITKDYMKMGGGFCHDESETREDQVAAKD-PVVTGE-SPSTCFDSSDGVHCDVGLGDS 1420
D G +E + +D+ + P + G+ S ++ D + D+ ++
Sbjct: 498 SNLFDSDKESESGNIIKNEKQNMDDEKINDNLPSLFGDHSRIRHTENKDNIS-DINNNNN 556
Query: 1421 ---TTSSNSKEATNGLENVGRTDTFDT 1444
++S+N+ + N +V TF++
Sbjct: 557 NNNSSSNNNNISNNHFNSVSSNSTFNS 583
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 172 (65.6 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 42/132 (31%), Positives = 69/132 (52%)
Query: 894 ECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRK 953
E + LL++ G+P++ AP EAEAQCA + + V ++D D F A + +++ +
Sbjct: 141 EAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQ 200
Query: 954 YVETYFMQDIEKDL-GLTR--EKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGL 1010
E +IEK L GL E+ + + +LLG DY E I G+G A+E++ + D
Sbjct: 201 RKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLDRF 260
Query: 1011 SKFREWIESPDP 1022
K + + P P
Sbjct: 261 VKEADRSKYPIP 272
Score = 42 (19.8 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 1100 FNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPK 1159
FNE K+ R++KA K I + +D + V S KK + + R + + K
Sbjct: 317 FNEDRVKLGINRLEKASKTIPQGR----LDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNK 372
Query: 1160 KAE 1162
E
Sbjct: 373 GGE 375
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 173 (66.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 46/155 (29%), Positives = 79/155 (50%)
Query: 853 EATEKILEEEMQILDHEYMYLGDEQKKLE--RNAESVSSEMFAECQELLQMFGLPYIIAP 910
EA+ EE + E + G + + + A V+ EM E E L+ +PY++AP
Sbjct: 89 EASRAKRREESKKAGMELLKAGKPAQAYQEFQKAIDVTPEMARELIEELKKIDVPYVVAP 148
Query: 911 MEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETY---FMQDIEKDL 967
EA+AQ Y+E V G++++DSD+ +FGA+ + + + +E F E L
Sbjct: 149 YEADAQMVYLERNGYVSGIISEDSDLLVFGAKRLLTKLDQHGQCIEVNRREFCAVREISL 208
Query: 968 -GLTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
G T + +MA+ G DY +GI+ +G+ A ++
Sbjct: 209 TGWTDAEFRQMAIFSGCDYLDGINKMGLKTAYRMI 243
Score = 47 (21.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 1342 FCIDDQEIGQ-------PSVSPCDDPFLEAEITKDY 1370
F +D Q++G P V P P+LE I + Y
Sbjct: 385 FSVDPQQVGALTANGLAPRVFPLPRPYLEETINRPY 420
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 164 (62.8 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 46/122 (37%), Positives = 66/122 (54%)
Query: 898 LLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVE- 956
LL G+ IIAP + EAQCA +E + G +T D D FLFG +++Y+ FD
Sbjct: 119 LLTELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYR--FDFTAGTSS 176
Query: 957 TYFMQDI-EKDLG-------LTREKLIRMALLLGSDYTE-GISGIGIVNAIEVVNAFPEE 1007
T + DI LG ++R LI A+LLG DY + G+ IGIV+ +++ F +
Sbjct: 177 TACLHDIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQRGVQNIGIVSVFDILGEFGD- 235
Query: 1008 DG 1009
DG
Sbjct: 236 DG 237
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 162 (62.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 36/118 (30%), Positives = 62/118 (52%)
Query: 894 ECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDR- 952
EC LL + G+P I AP EAEA CA++ V+ V ++D D FG + + + R
Sbjct: 112 ECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRD 171
Query: 953 KYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGL 1010
+ Y + + + L L E+ + + +LLG DY + I G+G A++++ +G+
Sbjct: 172 SEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIEGV 229
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 164 (62.8 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 46/171 (26%), Positives = 84/171 (49%)
Query: 848 ENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYI 907
EN A + ++ L + L+HE + A +S + E ++L+ + Y+
Sbjct: 89 ENKRARSRKENLA---RALEHEANGNSSAAYECYSKAVDISPSIAHELIQVLRQENVDYV 145
Query: 908 IAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGA-RSVYKNIFDDRKYVETYFMQDI--E 964
+AP EA+AQ A++ + VD ++T+DSD+ FG R ++K D + + +
Sbjct: 146 VAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCLRIIFK--MDKFGHGVEFQASKLPKN 203
Query: 965 KDL---GLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSK 1012
KDL G + + L+ M +L G DY + + G+G+ A ++ F D + K
Sbjct: 204 KDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIK 254
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 159 (61.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 45/168 (26%), Positives = 82/168 (48%)
Query: 845 KAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGL 904
K +E E + L++ Q+L L + ++ R+ +++S M E + + G+
Sbjct: 86 KDVEKARREKRQTNLQKGKQLLREGK--LAEARECFSRSV-NITSSMAHEVIKAARSEGV 142
Query: 905 PYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI--FDDRKYVETYFMQD 962
YI+AP EA++Q AY+ + + ++T+DSD+ FG + V + F + ++
Sbjct: 143 DYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGCKKVLLKMDKFGNGLEIDQARF-G 201
Query: 963 IEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEED 1008
+ + LG T EK M +L G DY I GIG+ A +++ D
Sbjct: 202 MCRSLGDVFTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPD 249
>CGD|CAL0001028 [details] [associations]
symbol:orf19.652 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 CGD:CAL0001028 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15339 EMBL:AACQ01000173
RefSeq:XP_711995.1 ProteinModelPortal:Q59QM2 GeneID:3646389
KEGG:cal:CaO19.652 Uniprot:Q59QM2
Length = 684
Score = 115 (45.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 904 LPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKN 947
+ Y+ AP E EAQCAY++ +VD V++ D D +FGAR V +N
Sbjct: 135 IEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFGARRVLRN 178
Score = 91 (37.1 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 954 YVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNA 997
YV M +E++ GLT +L+ +A L G DY+ G +GIVNA
Sbjct: 203 YVTPVDMDKVEQETGLTTSRLVFLASLRGGDYSVGAKKMGIVNA 246
>FB|FBgn0036203 [details] [associations]
symbol:Muc68D "Mucin 68D" species:7227 "Drosophila
melanogaster" [GO:0016490 "structural constituent of peritrophic
membrane" evidence=ISS] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0008061 "chitin binding" evidence=IEA]
[GO:0006030 "chitin metabolic process" evidence=IEA] [GO:0031012
"extracellular matrix" evidence=ISM] [GO:0005201 "extracellular
matrix structural constituent" evidence=ISM] InterPro:IPR002557
Pfam:PF01607 PROSITE:PS50940 SMART:SM00494 GO:GO:0005576
EMBL:AE014296 eggNOG:NOG12793 GO:GO:0031012 GO:GO:0008061
GO:GO:0005201 CAZy:CBM14 Gene3D:2.170.140.10 SUPFAM:SSF57625
GO:GO:0006030 GeneTree:ENSGT00700000104174 EMBL:AY075323
RefSeq:NP_648504.2 UniGene:Dm.20068 SMR:Q9VTN2 MINT:MINT-900668
STRING:Q9VTN2 EnsemblMetazoa:FBtr0076119 GeneID:39326
KEGG:dme:Dmel_CG6004 UCSC:CG6004-RB CTD:39326 FlyBase:FBgn0036203
InParanoid:Q9VTN2 OMA:STESSQD OrthoDB:EOG4WSTSF GenomeRNAi:39326
NextBio:813085 Uniprot:Q9VTN2
Length = 1514
Score = 151 (58.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 124/598 (20%), Positives = 234/598 (39%)
Query: 282 SRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNF 341
S +++E + E SSS T Q T+ E + + +E +++ N +S + S
Sbjct: 550 SPLSTEPSTEANESSS-TESSQDSTTQ--ESSSSTEDPLSTESS-TEATNESSSTESSQD 605
Query: 342 SSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKE 401
S+T +S+S T+ GP + S E+ E + ++ + + + E E
Sbjct: 606 STTQESSSSTE-GPLSTESSTEGSNESSSTESSQDSTTQKSSSSTESPLSTEPSTEA-NE 663
Query: 402 IEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLK 461
+ ++ T S T T + + + +S D T + SS ST
Sbjct: 664 SSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTES 723
Query: 462 SGISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERK 521
S + E S ++S+++ + P+ S A+ S S S ++ TT+
Sbjct: 724 STEANESSSTESSQDSTTQESSS----STESPLSTEPSTEANESSSTESS--QDSTTQES 777
Query: 522 GSS----LSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSNI 577
SS LS + + N + E S +S + S P S+ S +E + +
Sbjct: 778 SSSTEGPLSTEPSTEANESSSTES---SQDSTTQESSSSSEGPLSTESSTEANESSSTES 834
Query: 578 EEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGE 637
+++ QE+ + + E A E + E+ + D T + ++ + P
Sbjct: 835 SQDSTTQESSSSTEDPLSTESSTEATYESSSTES----SQDST-TQESSSSTEGPLSTES 889
Query: 638 SVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKD 697
S +ES D+ ++S L E E S E + ++
Sbjct: 890 STEGSNESSSTE----SSQDSTTQESSSSTESPLSTEPST-EANESSSTESSQDSTTQES 944
Query: 698 NSYFEQ--SRQGANDGANDGRSLCS--DAPCEDSGTTME--LTEVQLVKGRCLSASAKGD 751
+S E S + + + AN+ S S D+ ++S ++ E L+ +G S+S +
Sbjct: 945 SSSTEGPLSTESSTE-ANESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNESSSTESS 1003
Query: 752 EHLTHEDKKNNCEAETSVLPGDKKNEIE-VEMKHDFTAEPSCRTVGTSDTSIPL-VKTSG 809
+ T ++ ++ E+ S P + NE E D T + S +S T PL ++S
Sbjct: 1004 QDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQES-----SSSTEGPLSTESST 1058
Query: 810 NASIYDTDIEQKSAEERTPDTYLKDSKQNT-GIFATKAIENVHAEA--TEKILEEEMQ 864
AS + S+ E + D+ ++S +T G +T++ V E TE + Q
Sbjct: 1059 EAS------NESSSTESSQDSTTQESSSSTEGPLSTESSTEVTQEPSPTESLPNSSTQ 1110
Score = 139 (54.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 122/645 (18%), Positives = 232/645 (35%)
Query: 275 GVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDE-QQQIPSEHPVSDSANNG 333
G+ + +A + ++ I SSS + + T S + + + S + +S G
Sbjct: 142 GIEPLSQDNLADKDKKDIISSSSDSSPTEDATYSSTQVSSTQVPEDASSAESIQESTTQG 201
Query: 334 A----SIDKSNFSSTDQSN-SVTKLGPEESRKSFADDV-----ETYLDERGRVRLSKVRA 383
+ I S +S D S + P ES + E+++ + SKV +
Sbjct: 202 SRSSTDISLSTEASLDDIILSSESIVPTESSTTIISSSTEGSWESHISTDSSIG-SKVES 260
Query: 384 MGIRMTRDL-QRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSL 442
+ I L Q + + P+ + S +L ++ + SE S
Sbjct: 261 LLIEALYSLIQESSSSSESPVSNEPSTGATDDSSSTESLPDSTQESSSSSESPVSFELST 320
Query: 443 DDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRA 502
+ TNES SS ST S S E SF+ S + +S
Sbjct: 321 EATNESSSSESLPNSSTQDSSSSTETSFQTESTTDATDESSSTESQPDSTTQESSSSTEG 380
Query: 503 ----HSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEG--GISDESEVEWEEGP 556
SS +V+D + +TE S + ++++ PL+ E ++ S E +
Sbjct: 381 PLSTESSTAVTD---QSSSTESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDS 437
Query: 557 SCAPKSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENA 616
+ SS + S ++ + E++ E+ + S LS + E E++
Sbjct: 438 TTQESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTEATNESS 497
Query: 617 CDGTWLYDRENNMDDPNFLGE-SVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGREL 675
+ D + G S E+ E D+ ++S L E
Sbjct: 498 STES-SQDSTTQESSSSSEGPLSTESSTEATNESSSTESSQDSTTQESSSSTESPLSTEP 556
Query: 676 KLYEPRNSDEKEMLINKPFEKDNSYFEQ--SRQGANDGANDGRSLCS--DAPCEDSGTTM 731
E S E + ++ +S E S + + + N+ S S D+ ++S ++
Sbjct: 557 ST-EANESSSTESSQDSTTQESSSSTEDPLSTESSTEATNESSSTESSQDSTTQESSSST 615
Query: 732 E--LTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIE-VEMKHDFTA 788
E L+ +G S+S + + T + ++ E+ S P + NE E D T
Sbjct: 616 EGPLSTESSTEGSNESSSTESSQDSTTQKSSSSTESPLSTEPSTEANESSSTESSQDSTT 675
Query: 789 -EPSCRTVG--TSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATK 845
E S T G +++ S ++S S D+ ++ S+ P ++ +T +
Sbjct: 676 QESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGP----LSTESSTEANESS 731
Query: 846 AIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSE 890
+ E+ T++ L E +E E + +S + E
Sbjct: 732 STESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQE 776
Score = 131 (51.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 112/590 (18%), Positives = 230/590 (38%)
Query: 284 IASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSS 343
+++E++ E SS T Q T+ E + + +E +++ N +S + S S+
Sbjct: 416 LSTESSTEATNESSSTESSQDSTTQ--ESSSSTEGPLSTESS-TEATNESSSTESSQDST 472
Query: 344 TDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIE 403
T +S+S T+ GP + S E+ E + ++ + + + E E
Sbjct: 473 TQESSSSTE-GPLSTESSTEATNESSSTESSQDSTTQESSSSSEGPLSTESSTEATNESS 531
Query: 404 QERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSG 463
+ ++ T S T + T + + + +S D T + SS + ST +S
Sbjct: 532 STESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEDPLST-ES- 589
Query: 464 ISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGS 523
S E + + +S + + + P+ +S + S ++S ++ TT++ S
Sbjct: 590 -STEATNESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNESSSTESS-QDSTTQK--S 645
Query: 524 SLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEE---E 580
S S ++ P E ++ S+ + S + + LS +E S+ E +
Sbjct: 646 SSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQD 705
Query: 581 ANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGESVS 640
+ QE+ S + E +E N+ + E++ D T + ++ + P S
Sbjct: 706 STTQESSSSSEGPLSTESS----TEANESSST-ESSQDST-TQESSSSTESPLSTEPSTE 759
Query: 641 QQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSY 700
S E D+ ++S G L E E S E + ++ +S
Sbjct: 760 ANESSSTE-----SSQDSTTQESSSSTEGPLSTEPST-EANESSSTESSQDSTTQESSSS 813
Query: 701 FEQ--SRQGANDGANDGRSLCS--DAPCEDSGTTME--LTEVQLVKGRCLSASAKGDEHL 754
E S + + + AN+ S S D+ ++S ++ E L+ + S+S + +
Sbjct: 814 SEGPLSTESSTE-ANESSSTESSQDSTTQESSSSTEDPLSTESSTEATYESSSTESSQDS 872
Query: 755 THEDKKNNCEAETSVLPGDK-KNEIE-VEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNAS 812
T ++ ++ E S + NE E D T + S +S T PL T +
Sbjct: 873 TTQESSSSTEGPLSTESSTEGSNESSSTESSQDSTTQES-----SSSTESPL-STEPSTE 926
Query: 813 IYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEE 862
++ + S + T ++ + +T+A E+ E+++ +E
Sbjct: 927 ANESSSTESSQDSTTQESSSSTEGPLSTESSTEANESSSTESSQDSTTQE 976
Score = 59 (25.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 21/80 (26%), Positives = 33/80 (41%)
Query: 1397 TGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATST 1456
T SP T + SD G+ S NS G T D +P ++++ST
Sbjct: 1147 TSGSPCTTDNPSDPESSSSTPGNDDDSGNSGSENGNSSTSGSPCTTDNPSDP--ESSSST 1204
Query: 1457 DSARNDAGRA-SRGSLTAMT 1475
+D+G + S +T+ T
Sbjct: 1205 PGNDDDSGNSGSESGITSTT 1224
Score = 50 (22.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 31/167 (18%), Positives = 55/167 (32%)
Query: 1304 QDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLE 1363
Q+S G S + S + + + +D + + +PS + E
Sbjct: 975 QESSSSTEGPLSTESSTEGSNESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTE 1034
Query: 1364 AE---ITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDS 1420
+ T++ G ES T ++ ST +SS + S
Sbjct: 1035 SSQDSTTQESSSSTEGPLSTESSTEASNESSS---TESSQDSTTQESSSSTEGPLSTESS 1091
Query: 1421 TTSSNSKEATNGLENVGRTDTFDTEPNPV-VQNATSTDSARNDAGRA 1466
T + T L N T T NP ++ + ST +D+G +
Sbjct: 1092 TEVTQEPSPTESLPNSSTQGTPCTTDNPSSLEPSPSTPGNDDDSGNS 1138
Score = 46 (21.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 1144 NNGLENGNNRSQKAPKKAE-----ESVSGAQNNMEKSSQSQS 1180
N+G ENGN+ + +P + ES S N + S S S
Sbjct: 1175 NSGSENGNSSTSGSPCTTDNPSDPESSSSTPGNDDDSGNSGS 1216
Score = 46 (21.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 1144 NNGLENGNNRSQKAPKKAE-----ESVSGAQNNMEKSSQSQS 1180
N+G ENGN+ + +P + ES S N + S S S
Sbjct: 1137 NSGSENGNSSTSGSPCTTDNPSDPESSSSTPGNDDDSGNSGS 1178
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 151 (58.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 45/161 (27%), Positives = 78/161 (48%)
Query: 845 KAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGL 904
K +E E + L + Q+L + E + + +++ M + + + G+
Sbjct: 86 KEVERSRRERRQSNLLKGKQLLREGKV---SEARDCFARSINITHAMAHKVIKAARALGV 142
Query: 905 PYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI--FDDRKYVETYFMQD 962
++AP EA+AQ AY+ A +V V+T+DSD+ FG + V + F + V+ +
Sbjct: 143 DCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARL-G 201
Query: 963 IEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
+ K LG T EK M +L G DY + GIG+ A +V+
Sbjct: 202 MCKQLGDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVL 242
Score = 52 (23.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 1126 LLMDDAGQEVSKSRKKRKNNGLENGNN-RSQKAPKKAEESVSGAQNNMEKSSQSQSRER 1183
L DD + S KK K NG +G + S K K +S G + + + S+ R +
Sbjct: 424 LAEDDLLSQYSSVSKKIKENGCGDGTSPNSSKMSKSCPDS--GTAHKTDAHTPSKMRNK 480
Score = 37 (18.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 1182 ERKVLEKFVLAEMENPERLTPAG 1204
+RK++ + NPE LT AG
Sbjct: 292 QRKLVPLNAYGDDVNPETLTYAG 314
>GENEDB_PFALCIPARUM|PF10_0080 [details] [associations]
symbol:PF10_0080 "endonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 145 (56.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 49/202 (24%), Positives = 98/202 (48%)
Query: 804 LVKTSGNASIYDTD-IEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEE 862
++K++ N ++ DT+ I + + +L D K N K +N+ + +I+ +E
Sbjct: 148 ILKSNDNINVNDTNTINNTFKKNNIVNNFLCDQKNNISNICEK--KNLKKKNQMEIIVDE 205
Query: 863 MQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL 922
I H+ +K + ++S+ + L + +P I +AE +CA ++
Sbjct: 206 DGI--HDLF-----KKNI---FIKINSKTANDIYNYLLLENIPIFITKNDAEKECA-IQC 254
Query: 923 ANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLG 982
++ D VV+DD+D FGA ++ + I + +K +++ +L + E+ I +L G
Sbjct: 255 SHERDIVVSDDTDALAFGAPNLIRFITNKKKR-HIINKEELLNELNINYEQFIDFCILSG 313
Query: 983 SDYTEGISGIGIVNAIEVVNAF 1004
DY+ I GIG V A E++ +
Sbjct: 314 CDYSAKIPGIGPVKAHEIIKKY 335
>UNIPROTKB|Q8IJW1 [details] [associations]
symbol:PF10_0080 "Endonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 145 (56.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 49/202 (24%), Positives = 98/202 (48%)
Query: 804 LVKTSGNASIYDTD-IEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEE 862
++K++ N ++ DT+ I + + +L D K N K +N+ + +I+ +E
Sbjct: 148 ILKSNDNINVNDTNTINNTFKKNNIVNNFLCDQKNNISNICEK--KNLKKKNQMEIIVDE 205
Query: 863 MQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL 922
I H+ +K + ++S+ + L + +P I +AE +CA ++
Sbjct: 206 DGI--HDLF-----KKNI---FIKINSKTANDIYNYLLLENIPIFITKNDAEKECA-IQC 254
Query: 923 ANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLG 982
++ D VV+DD+D FGA ++ + I + +K +++ +L + E+ I +L G
Sbjct: 255 SHERDIVVSDDTDALAFGAPNLIRFITNKKKR-HIINKEELLNELNINYEQFIDFCILSG 313
Query: 983 SDYTEGISGIGIVNAIEVVNAF 1004
DY+ I GIG V A E++ +
Sbjct: 314 CDYSAKIPGIGPVKAHEIIKKY 335
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 148 (57.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 43/149 (28%), Positives = 76/149 (51%)
Query: 869 EYMYLG--DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLV 926
E + LG +E + R V+ +M + + I+AP EA+AQ A++ A++
Sbjct: 105 ELLRLGRIEEARSHMRRCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVA 164
Query: 927 DGVVTDDSDVFLFGARSV-YK-NIFDDRKYVETYFMQDIEKDLGLTREK-----LIRMAL 979
++T+DSD+ LFGA+++ +K ++ VE + + +G T EK RM +
Sbjct: 165 QYIITEDSDLTLFGAKNIIFKLDLNGSGLLVEA---EKLHLAMGCTEEKYHFDKFRRMCI 221
Query: 980 LLGSDYTEGISGIGIVNAIEVVNAFPEED 1008
L G DY + + GIG+ A + + +ED
Sbjct: 222 LSGCDYLDSLPGIGLAKACKFILKTEQED 250
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 151 (58.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 39/117 (33%), Positives = 61/117 (52%)
Query: 903 GLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI--FDDRKYVETYFM 960
G+ ++AP EA+AQ AY+ A +V V+T+DSD+ FG + V + F + V+ +
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARL 200
Query: 961 QDIEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFRE 1015
+ K LG T EK M +L G DY + GIG+ A +++ D L R+
Sbjct: 201 -GMCKQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRK 256
Score = 49 (22.3 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1139 RKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRE 1182
RK + L +S AP K++ES + + SQS+E
Sbjct: 623 RKSDSSTSLPENTEKSDIAPLKSDESSDESHPLHDVGCSSQSQE 666
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 150 (57.9 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 903 GLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI--FDDRKYVETYFM 960
G+ ++AP EA+AQ AY+ A +V ++T+DSD+ FG + V + F + V+ +
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEVDQARL 200
Query: 961 QDIEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
K LG T EK M +L G DY + GIG+ A +V+
Sbjct: 201 GKC-KQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVL 242
Score = 48 (22.0 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 29/136 (21%), Positives = 59/136 (43%)
Query: 1058 VSEFDESISQFD--EDKQSAE--YSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIK 1113
V++ D ++++ D DK+ + ++N ++ D T + E+ + RF + S
Sbjct: 531 VTDKDTNVNESDCPNDKKLVDTCIAENSREQIPDDVTVIAEESQSSKISRFTRTLSPPTS 590
Query: 1114 KAVK------GITGSQSLLLMDDAGQEVSKSRKKRKNN-GLENGNNRSQKAPKKAEESVS 1166
++ G G S G + + R+K + L + S + K+EES
Sbjct: 591 GTLRSCFHWSGSLGDFSRTPSPSPGTALQQFRRKSDSAVSLPENSEVSDASQLKSEESGD 650
Query: 1167 GAQNNMEKSSQSQSRE 1182
+ + E++ SQS+E
Sbjct: 651 ESHLSHEEAWSSQSQE 666
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 146 (56.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 903 GLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI--FDDRKYVETYFM 960
G+ ++AP EA+AQ AY+ A +V ++T+DSD+ FG + V + F + ++ +
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARL 200
Query: 961 QDIEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
+ + LG T EK M +L G DY + GIG+ A +V+
Sbjct: 201 -GMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVL 242
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 156 (60.0 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 39/120 (32%), Positives = 64/120 (53%)
Query: 886 SVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVY 945
+V+ M E + + G+ I+AP EA+AQ AY+ +V ++T+DSD+ FG + V+
Sbjct: 124 NVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGVVQAIITEDSDLLAFGCKKVF 183
Query: 946 KNI--FDDRKYVETYFMQDIEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
I F + ++ + + K LG T EK M +L G DY I GIG+ A +++
Sbjct: 184 LKIDKFGNGLEIDQARLGNC-KQLGNIFTEEKFRYMCILSGCDYLSSIHGIGLAKACKLL 242
Score = 47 (21.6 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 1113 KKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEE-SVSGAQNN 1171
K KGI S+ + G+E+ R++ L +G+ +Q + KA++ SG
Sbjct: 393 KSTTKGIEKIISIKGLKLPGKELFTKRQRSDLEELSDGDLLNQYSFSKAKKFKESGEDGQ 452
Query: 1172 MEKS-SQSQS 1180
+KS S QS
Sbjct: 453 SQKSISAIQS 462
Score = 40 (19.1 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 1332 DKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITK 1368
D D IE C QE+ V+ + PFLE E TK
Sbjct: 518 DGDTIEDVEEDC-KQQEVKH--VAEDETPFLETEKTK 551
>UNIPROTKB|G4MVT4 [details] [associations]
symbol:MGG_01800 "Flap structure-specific endonuclease"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 EMBL:CM001232 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K15339 RefSeq:XP_003714807.1 ProteinModelPortal:G4MVT4
EnsemblFungi:MGG_01800T0 GeneID:2679379 KEGG:mgr:MGG_01800
Uniprot:G4MVT4
Length = 932
Score = 146 (56.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 36/116 (31%), Positives = 64/116 (55%)
Query: 893 AECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKN----- 947
A + ++++FG + AP EAEA+CA ++ +VD V+++D D +FG +N
Sbjct: 106 AMAKRMIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRNWSSEG 165
Query: 948 IFDDRK--YVETYFMQDIE-KDLGLTREKLIRMALLLGSDYT-EGISGIGIVNAIE 999
+ ++ +V Y I+ + GL RE ++ +AL+ G DY +G+ G G+ A E
Sbjct: 166 VRGSKEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACE 221
>POMBASE|SPAC12G12.16c [details] [associations]
symbol:SPAC12G12.16c "Fen1 family nuclease, XP-G
family (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=ISM] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006281
"DNA repair" evidence=ISM] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC12G12.16c GO:GO:0005737
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004519 GO:GO:0004518 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 PIR:T37913 RefSeq:NP_592882.1
ProteinModelPortal:Q09708 EnsemblFungi:SPAC12G12.16c.1
GeneID:2543216 KEGG:spo:SPAC12G12.16c OrthoDB:EOG4VT96S
NextBio:20804238 Uniprot:Q09708
Length = 496
Score = 146 (56.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 49/156 (31%), Positives = 77/156 (49%)
Query: 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM--EAEAQCAYMELANLVDGVVTDD 933
E KLER S + E E+L++ G+P +P+ EAEA + + NL V T D
Sbjct: 262 ELDKLERRLYRPSPQNIFEIFEILKILGIPASFSPIGVEAEAFASAISQNNLAYAVATQD 321
Query: 934 SDVFLFGARSVYKNIFD--DRKYVETYFM--QDIEKDLGLTREKLIRMALLLGSDYTEGI 989
+DV L G+ S+ N D D ++ M + I ++L LT + L+ G+D+T I
Sbjct: 322 TDVLLLGS-SMISNFLDLNDNFHLPLQIMDPRKIAQELNLTFDGFQDYCLMCGTDFTSRI 380
Query: 990 SGIGIVNAIEVV----NAFPEEDGLSKFREWIESPD 1021
IG V A++++ NAF L+ ++I D
Sbjct: 381 PKIGPVRALKLIRYYGNAFDVLKALNVEEKYIIPTD 416
Score = 45 (20.9 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 25 KVLSDMENCSERTDGVSASDDKENLD 50
K+L D+ + +ER + A ++ ENL+
Sbjct: 147 KLLFDLRSLNERDNPFHAQNNAENLE 172
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 152 (58.6 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 44/158 (27%), Positives = 75/158 (47%)
Query: 860 EEEMQILDHEYMYLGDEQKKLERNAES---------VSSEMFAECQELLQMFGLPYIIAP 910
E + Q HE LG E + R AE+ V+ M + E L+ + Y++AP
Sbjct: 89 ELDRQQRRHESKTLGMELYRKGRTAEAYQELQKAVDVTPLMARQLIEELKKLDIQYVVAP 148
Query: 911 MEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETY---FMQDIEKD- 966
EA+AQ Y+E +DG++++DSD+ +FGA+ + + + +E F E
Sbjct: 149 YEADAQLVYLEKHGFIDGIISEDSDLLVFGAKRLLSKLDQHGELIEINRADFTACREVSF 208
Query: 967 LGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAF 1004
+G T RM ++ G DY I+ +G+ A + +
Sbjct: 209 VGWTDADFRRMCIMSGCDYLPNIARVGLKTAYRSIRKY 246
Score = 52 (23.4 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 1354 VSPCDDPFLEAEITKDYMKMGGGFCHD-ESETREDQVAAKD-PVVT-GESPSTCFDSSDG 1410
+S DP A +T + G H ES RED+V + P+ T E+ +T D+
Sbjct: 524 MSQMPDPSEAANMTNEKFSAAG---HSGESSEREDEVTKTNVPITTRSETEATQLDAKKQ 580
Query: 1411 VHCDVGLGDSTTSSNSKEATN 1431
+ + DS T S A +
Sbjct: 581 AY-EAAF-DSRTLSRKISAAS 599
Score = 47 (21.6 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 17/68 (25%), Positives = 23/68 (33%)
Query: 1382 SETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVG-RTD 1440
SET Q+ AK S + + T + K T+ L +TD
Sbjct: 568 SETEATQLDAKKQAYEAAFDSRTLSRKISAASEPQVVPQVTDHHIKRQTSTLSKYSFKTD 627
Query: 1441 TFDTEPNP 1448
T PNP
Sbjct: 628 ASGTRPNP 635
Score = 41 (19.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/119 (20%), Positives = 50/119 (42%)
Query: 1261 GQQEVRRSTRSRKP-VDYNVDDPEIADVGKILXXXXXXXXXXAKQDSVHGVTGEASA--D 1317
G Q++ RS ++RK +D DD D+ + ++ S G +GE+S D
Sbjct: 497 GGQKLNRSKKARKSTLDVFSDDAT-EDIMSQMPDPSEAANMTNEKFSAAGHSGESSERED 555
Query: 1318 YSRKKQ----HRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMK 1372
K R++ + D ++ D + + + +S +P + ++T ++K
Sbjct: 556 EVTKTNVPITTRSETEATQLDAKKQAYEAAFDSRTLSR-KISAASEPQVVPQVTDHHIK 613
Score = 37 (18.1 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 6/13 (46%), Positives = 12/13 (92%)
Query: 1132 GQEVSKSRKKRKN 1144
GQ++++S+K RK+
Sbjct: 498 GQKLNRSKKARKS 510
>DICTYBASE|DDB_G0290503 [details] [associations]
symbol:DDB_G0290503 species:44689 "Dictyostelium
discoideum" [GO:0005543 "phospholipid binding" evidence=IEA]
InterPro:IPR001849 PROSITE:PS50003 SMART:SM00233
dictyBase:DDB_G0290503 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 eggNOG:NOG12793 EMBL:AAFI02000164
RefSeq:XP_635612.1 HSSP:P11978 ProteinModelPortal:Q54G05
PRIDE:Q54G05 EnsemblProtists:DDB0188916 GeneID:8627684
KEGG:ddi:DDB_G0290503 OMA:FNSKKQQ Uniprot:Q54G05
Length = 1492
Score = 122 (48.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 141/726 (19%), Positives = 289/726 (39%)
Query: 221 LVQMREQL--MAENRQKYQK-VKKAPEKFSELQIQAYLKTVAFRREIDEV--QKAAAGRG 275
++++RE++ + E Q+ +K ++ +KF E + +T +EI + Q ++
Sbjct: 134 IIKLREKIKHLNEKHQESEKRYQEKEKKFEEQRTIEIQETTKKEQEIKSLTLQLSSKDES 193
Query: 276 VAGV--QTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSA--- 330
+ + Q ++ +R I + D ++L ++ K E Q I + + +DS
Sbjct: 194 MKSLEKQVEKLVDIEHRSEIEQTK--KDNEIL---KLTEKIKEIQLIENLNSTNDSKVNQ 248
Query: 331 ---NNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETY-LDERGRVR-LSKVRAMG 385
+N + +S D++N + L + ++ F + Y L+ + + L+++
Sbjct: 249 LLEDNIKRLQESLNEIKDENNDLQSL-IDTQKQQFEKRINQYQLEIQDKENELNEMNQQS 307
Query: 386 IRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFI---GTSL 442
+ + Q++L+ +++ E N N L NE + K++ +K K I L
Sbjct: 308 LSQVKSFQQSLQQ-SQLDLE--NDKNQFSTKLQLVNNEIQSLKSIVDDKLKEIQLKDNQL 364
Query: 443 DDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRA 502
N+ I+ NK + + ++ +S N N + + K NS +
Sbjct: 365 TQLNQQ-HEIDNNKNNQMILELNDNISKISNQLNEKDNKIQELSKQSIDKQKEIENSTSS 423
Query: 503 HSSISVSDSDWEEGTTERKG------SSLSDDANA--GINPPLNLEEGG-ISDESEVEW- 552
+ + +D E+ + L D N IN LN +E IS ++++
Sbjct: 424 SDQLQLKLNDISNELLEKLNDINQLSNKLQDKENQILEINNKLNEKENQLISKDNQLNQL 483
Query: 553 -EEGPSCAPKSSLSFPAESEKTVSNIEEEANLQEAIR--RSLLDVCIEKPNYALSEHNKC 609
E S + + L S++ E+ N Q I +S L+ K N L E+N+
Sbjct: 484 IENNESSSDELKLKLNQLSDELQEKDEKLLNNQSVINELQSNLNENQNKIN-ELIENNQS 542
Query: 610 ENLGENACDGTWLYDRENNMDDP-NFLGESVSQQHESICEYVDGLG-KLDTVGGI--NNS 665
+ E L D+ D+ L S+ ++ E I + D L K D + + NN
Sbjct: 543 SS-DELKLKLNQLSDKLQEKDEKLKSLESSIIERDEKIDQLQDNLNEKQDKINELVENNE 601
Query: 666 EVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCE 725
L +L + ++ E L+N + S + + N+ N L +
Sbjct: 602 SSSDELQSKLIQLSDQLQEKDEKLLN-----NQSIINELQSNLNENQNKINELIEN---- 652
Query: 726 DSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEA-ETSVLPGDKKNEIEVEMKH 784
+ ++ EL +L+K LS K DK N + ETS++ K + ++ +
Sbjct: 653 NQSSSDELNS-KLIK---LSDELK--------DKNENVRSLETSIIENQDKLD-QLIQSN 699
Query: 785 DFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFAT 844
T + + +I + N S D +++ K E++ L ++ Q++
Sbjct: 700 QVTVNELQSKLNEKEININQL-IENNQSSLD-ELQSKLNEKQNEINQLIENNQSSSDELQ 757
Query: 845 KAIENVHAEATE------KILEEEMQILDH---EYMYLGDEQKKLERNAESVSSEMFAEC 895
+ H E +E +++E D + + L DE K+ + +S+ S +
Sbjct: 758 SKLNEKHQEISELQSKLNELIENNESSSDELQSKLIQLSDELKEKDEKLKSLDSIIIENQ 817
Query: 896 QELLQM 901
++L+Q+
Sbjct: 818 EKLVQL 823
Score = 79 (32.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 28/141 (19%), Positives = 69/141 (48%)
Query: 1048 VNYAKNSVGGVSEFDESISQFDEDK---QSAEYSQNMKKIFMDKHTQLRLEAFYTFNERF 1104
+N N + + + +ES+S+ + K E + KI +D ++Q+ ++ + F+E+
Sbjct: 1019 INEKDNKINELIQTNESLSKDQQSKFENLEQELEEKNNKI-LDLNSQI-IDVNHQFSEKE 1076
Query: 1105 AKIRSKRIKKAVKGIT-GSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEE 1163
++ ++K K +Q+ ++D Q K ++ NN +N N + + ++ +E
Sbjct: 1077 NELNQLQLKLIEKDQEIENQNNKIIDINNQLNEKEKEININNDNDNNNEENIQLIEELKE 1136
Query: 1164 SVSGAQN--NMEKSSQSQSRE 1182
+ +N N+EK + ++ +
Sbjct: 1137 KLQDLENELNLEKDTVNEKND 1157
>DICTYBASE|DDB_G0289719 [details] [associations]
symbol:DDB_G0289719 "SFRS2-interacting protein"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 dictyBase:DDB_G0289719 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 EMBL:AAFI02000148 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 RefSeq:XP_636078.1
ProteinModelPortal:Q54H40 EnsemblProtists:DDB0188541 GeneID:8627288
KEGG:ddi:DDB_G0289719 eggNOG:KOG4430 InParanoid:Q54H40 OMA:ERESEHA
Uniprot:Q54H40
Length = 1419
Score = 97 (39.2 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 45/183 (24%), Positives = 84/183 (45%)
Query: 286 SEANREFIFSSSFTGDKQVLTSSRVEGKK----DEQQQIPSEHPVSDSANNGASIDKSNF 341
+ AN EF S T KQ L+++ ++ K+ D++++ E + N ++I+K+N
Sbjct: 317 NNANNEF---KSITDKKQKLSNNIIKKKEESDDDDEKEKEKEKEKNKKLKN-SNINKNN- 371
Query: 342 SSTDQS--NSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRD---LQRNL 396
S QS S TK P++S+K+ +D + ++E S+ + + D L+++
Sbjct: 372 SKESQSIKKSPTKSQPKQSKKNASDKITKTIEESQSESESEEPIEISKKSTDKPILKQSK 431
Query: 397 EMMKEIEQE-RPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERN 455
+ E E+E I S +++ KAV SE + ++ +E S N
Sbjct: 432 KKPSESEEESEKEQKKIVNKSSTKPISKQSKKKAVESESEEESEPGSEEESEEESKKAVN 491
Query: 456 KQS 458
K S
Sbjct: 492 KAS 494
Score = 97 (39.2 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 30/139 (21%), Positives = 62/139 (44%)
Query: 1059 SEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAV-- 1116
S+ +E + +E+K+ ++ K K T+ + E+ + E +K K +KK+
Sbjct: 558 SKSEEEEEEEEEEKEEESKKKSSSKQSKKKVTKSKFESEHESEEE-SKDSKKNVKKSASK 616
Query: 1117 ---KGITGSQSLLLMDDAGQEVSKSR----KKRKNNGLENGNNRSQKAPKKAEESVSGAQ 1169
K +T L ++ +E+ K + KK K N L+ + ++ K+ +E + +
Sbjct: 617 QSKKKVTQESDEELKSESDEEIKKEKSKKVKKEKENKLKEKEKKEEEKRKEEKEKLEREK 676
Query: 1170 NNMEKSSQSQSRERKVLEK 1188
EK + + + K EK
Sbjct: 677 KEKEKEKEKEKEKEKEKEK 695
Score = 84 (34.6 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 34/130 (26%), Positives = 55/130 (42%)
Query: 1060 EFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGI 1119
E D + E+K+ E +N +K +K + R E ER K +R +K K I
Sbjct: 728 EKDRKEKEEKEEKERKENEENERK---EKEEKKRKE-----KERKEKEEKERKEKEEKEI 779
Query: 1120 TGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQS- 1178
+ + +E + K+RK N + + +K K+ EE + EK Q
Sbjct: 780 KEKEEKKRKEK--EEKDRKEKERKENEEKKRKEKEEKERKEKEEREKQEKEREEKEKQEK 837
Query: 1179 QSRERKVLEK 1188
+ RERK E+
Sbjct: 838 EERERKEKEE 847
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 50/221 (22%), Positives = 94/221 (42%)
Query: 679 EPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQL 738
E + +E + +NK K S +QS++ A + + S SD E+ + E E
Sbjct: 479 EEESEEESKKAVNKASAKPIS--KQSKKKAVESEPESESE-SDEESEEEEESEE-EETNK 534
Query: 739 VKGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTS 798
V + S K + KK E+E+ + K+E E E + + E S + +S
Sbjct: 535 VVTKSTSKPLK-------QSKKKEIESES-----ESKSEEEEEEEEEEKEEES-KKKSSS 581
Query: 799 DTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSK-----QNTGIFATKAIENVHAE 853
S V S S ++++ E K +++ + K SK ++ +++ E + E
Sbjct: 582 KQSKKKVTKSKFESEHESEEESKDSKKNVKKSASKQSKKKVTQESDEELKSESDEEIKKE 641
Query: 854 ATEKILEEEMQILDH----EYMYLGDEQKKLERNAESVSSE 890
++K+ +E+ L E +E++KLER + E
Sbjct: 642 KSKKVKKEKENKLKEKEKKEEEKRKEEKEKLEREKKEKEKE 682
Score = 67 (28.6 bits), Expect = 3.9e-05, Sum P(4) = 3.9e-05
Identities = 43/156 (27%), Positives = 69/156 (44%)
Query: 746 ASAKGDEHLTHEDKKNNCEAET-SVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPL 804
ASAK ++ + KK E+E S D+++E E E + + T + V T TS PL
Sbjct: 493 ASAKP---ISKQSKKKAVESEPESESESDEESEEEEESEEEETNK-----VVTKSTSKPL 544
Query: 805 VKTSGNASIYDTDIEQKSAEERTPDTYLKDS---KQNTGIFATKAIENVHAEATEKILEE 861
K S I +++ E KS EE + K+ K+++ + K + E+ E EE
Sbjct: 545 -KQSKKKEI-ESESESKSEEEEEEEEEEKEEESKKKSSSKQSKKKVTKSKFES-EHESEE 601
Query: 862 EMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQE 897
E + +Q K + ES E+ +E E
Sbjct: 602 ESKDSKKNVKKSASKQSKKKVTQES-DEELKSESDE 636
Score = 67 (28.6 bits), Expect = 0.00054, Sum P(4) = 0.00054
Identities = 30/130 (23%), Positives = 52/130 (40%)
Query: 1070 EDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMD 1129
++K+ E + +K +K + R E NER K KR +K K + +
Sbjct: 719 DEKKRKEKEEKDRKEKEEKEEKERKEN--EENERKEKEEKKRKEKERKEKEEKERKEKEE 776
Query: 1130 DAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKF 1189
+E + ++K K R + KK +E + E+ + Q +ER+ EK
Sbjct: 777 KEIKEKEEKKRKEKEEKDRKEKERKENEEKKRKEKEEKERKEKEER-EKQEKEREEKEKQ 835
Query: 1190 VLAEMENPER 1199
E E E+
Sbjct: 836 EKEERERKEK 845
Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 20/106 (18%), Positives = 38/106 (35%)
Query: 1357 CDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVG 1416
C+D E + D + + D+ QV ++ T + +T + G
Sbjct: 1220 CEDCG-ECDYCLDGLDLHSDDDEDDGYFTNHQVTSRSRRTTTTTTTTTTTTGTGTPTTRR 1278
Query: 1417 LGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARND 1462
+TT++ S T V R + +T + T+T + D
Sbjct: 1279 SSRNTTTTTSTSPTTPTIPVTRRSSRNTPTTSATRTRTTTPQSSED 1324
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 140 (54.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 47/164 (28%), Positives = 77/164 (46%)
Query: 843 ATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAEC-QELLQM 901
A K E EK E +L L E + R A S+S+++ Q M
Sbjct: 84 AKKGTNEERRELREKRKEHAEMLLAKG---LEREARDTYRLATSISADIVENTIQYFRSM 140
Query: 902 FGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVY---KNIFDDRKYVETY 958
+ ++AP EA+AQ AY+ LVD V+T+DSD+ +FG +Y ++ + E
Sbjct: 141 TNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIVFGCEMIYFKWQSATGECSVYEKC 200
Query: 959 FMQD-IEKDLGLTR---EKLIRMALLLGSDYTE-GISGIGIVNA 997
+++ +LG + K R+ +L G DY + G+ G+G+ A
Sbjct: 201 NLKNCFTGELGGDKFDFVKFRRICILSGCDYLQAGLPGVGLSTA 244
>SGD|S000001800 [details] [associations]
symbol:SRP40 "Nucleolar serine-rich protein" species:4932
"Saccharomyces cerevisiae" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] SGD:S000001800
Pfam:PF05022 GO:GO:0005730 GO:GO:0006913 EMBL:BK006944 EMBL:X73541
GeneTree:ENSGT00700000104548 eggNOG:NOG318801 InterPro:IPR007718
RefSeq:NP_013018.3 GeneID:853967 KEGG:sce:YKR092C KO:K02927
RefSeq:NP_013020.3 GeneID:853969 KEGG:sce:YKR094C EMBL:L11275
EMBL:Z28317 PIR:S38170 ProteinModelPortal:P32583 DIP:DIP-2115N
IntAct:P32583 MINT:MINT-472548 STRING:P32583 PaxDb:P32583
EnsemblFungi:YKR092C CYGD:YKR092c OMA:DAXESAR OrthoDB:EOG4M68TB
NextBio:975404 Genevestigator:P32583 GermOnline:YKR092C
Uniprot:P32583
Length = 406
Score = 137 (53.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 81/377 (21%), Positives = 157/377 (41%)
Query: 248 ELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTS 307
++++ K +EI+E K+++ + +S +S ++ SSS +G+ +S
Sbjct: 5 KIKVDEVPKLSVKEKEIEE--KSSSSSSSSSSSSSSSSSSSS-----SSSSSGESSSSSS 57
Query: 308 SRVEGKK-DEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDV 366
S D SE S S+++ +S S+ S+ +S+S + G S S +D+
Sbjct: 58 SSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESSSESDSSSS-GSSSSSSSSSDES 116
Query: 367 ETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGT 426
+ + + + R D + + E E + ++ +G+ S + +E+G+
Sbjct: 117 SSESESEDETK-KRARESD---NEDAKETKKAKTEPESSSSSESSSSGSSSS-SESESGS 171
Query: 427 SKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFA 486
S + + +ES S + S+ S S S +S+++ +
Sbjct: 172 ESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSS 231
Query: 487 HLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSD-DANAGINPPLNLEEGGIS 545
+ +S + SS S S SD + SS SD D+++G + L +E +
Sbjct: 232 SDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEA-TA 290
Query: 546 DESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEAN-LQEAIRRSLLDVCIEKPNYALS 604
DES+ E E P+ + +S+ S + S NI + ++E R+ V K N+
Sbjct: 291 DESKAE--ETPASSNESTPSASSSSSANKLNIPAGTDEIKEGQRKHFSRVDRSKINFEAW 348
Query: 605 EHNKCENLGENACDGTW 621
E +N + A GTW
Sbjct: 349 ELT--DNTYKGAA-GTW 362
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 154 (59.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 45/161 (27%), Positives = 79/161 (49%)
Query: 845 KAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGL 904
K +E E + L + Q+L + E ++ + +++ M + + + G+
Sbjct: 86 KEVERSRRERRQSNLLKGKQLLREGKV---SEARECFTRSVNITHAMAHKVIKAARALGV 142
Query: 905 PYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI--FDDRKYVETYFMQD 962
++AP EA+AQ AY+ A +V V+T+DSD+ FG + V + F + V+ +
Sbjct: 143 DCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARL-G 201
Query: 963 IEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
+ K LG T EK M +L G DY + GIG+ A +V+
Sbjct: 202 MCKQLGDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVL 242
Score = 38 (18.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 1182 ERKVLEKFVLAEMENPERLTPAG 1204
+RK++ + NPE LT AG
Sbjct: 292 QRKLIPLNAYGDDVNPETLTYAG 314
Score = 38 (18.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 1129 DDAGQEVSKSRKKRKNNGLENGNNRSQKAPKK 1160
D +E + K N G +N PKK
Sbjct: 689 DSDSEESDCNNKSLDNQGSQNSKQHLPHFPKK 720
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 134 (52.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 41/172 (23%), Positives = 79/172 (45%)
Query: 847 IENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPY 906
+E E + L++ Q+L + E ++ + +++ M + + G+
Sbjct: 88 VEKSRRERRQANLQKGKQLLREGKI---TEARECFTRSVNITPSMAHDVIRAARTRGVDC 144
Query: 907 IIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIE-K 965
++AP EA+AQ A++ +++ V+T+DSD+ FG + V + +E K
Sbjct: 145 VVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGCKKVILKMDKQGNGLEIEQCHLGRCK 204
Query: 966 DLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFRE 1015
LG T EK M +L G DY + + GIG+ A +++ D L ++
Sbjct: 205 SLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPDILKVIKK 256
Score = 57 (25.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 33/122 (27%), Positives = 50/122 (40%)
Query: 1377 FCHDES---ETREDQ-------VAAKDPVVT---GESPSTCFDSSDGVHCDVGLGD-STT 1422
FCHDES ET+ED V +++ V+ G++ S C + D ++
Sbjct: 503 FCHDESNIAETQEDSKQDSSQSVESQEKHVSQSGGDTSSLCEEPEREQDKDEPSSPPASP 562
Query: 1423 SSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASRGSLTAMTFLRRKRR 1482
S +S+ A+ GL + T E N V + + R + G T F R K R
Sbjct: 563 SCSSRPASVGLGVFSWSGT-TKELNKSVSHPARDSTERQRSSSTPSGLSTLQQFHRNKAR 621
Query: 1483 RS 1484
S
Sbjct: 622 IS 623
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 146 (56.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 903 GLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI--FDDRKYVETYFM 960
G+ ++AP EA+AQ AY+ A +V ++T+DSD+ FG + V + F + ++ +
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARL 200
Query: 961 QDIEKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
+ + LG T EK M +L G DY + GIG+ A +V+
Sbjct: 201 -GMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVL 242
Score = 45 (20.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 1155 QKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAE 1193
Q+ +K++ S +NNM SQ +S E E L E
Sbjct: 631 QQFRRKSDSPTSLPENNMSDVSQLKSEESSDDESHPLRE 669
Score = 42 (19.8 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 1129 DDAGQEVSKS-RKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRER 1183
DD + S S KK K N E GN + + V+G N S+ ++R +
Sbjct: 428 DDLLSQYSLSFTKKTKKNSSE-GNKSLSFSEVFVPDLVNGPTNKKSVSTPPRTRNK 482
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 147 (56.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 45/184 (24%), Positives = 90/184 (48%)
Query: 841 IFATKAIENVHAEATEKILE-EEMQILDHEYMYLGDEQKK--LERNAESVSSEM-FAECQ 896
IF + N + E++ EE + Y+ G++ + + A ++ M F +
Sbjct: 76 IFDGGPLPNKKLKEQERLRHREEYKNKAKAYLLEGNKSQANICFQKAVDITPRMAFLLIK 135
Query: 897 ELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVE 956
EL + + Y++AP EA+AQ Y+ + VD ++T+DSD+ FGA + + D Y +
Sbjct: 136 EL-RALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLVAFGATHIIFKM-DKYGYAQ 193
Query: 957 TYFMQDI---EKD----LGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDG 1009
+D+ +KD + + L +M +L G DY +SG+G+ + +++ + +
Sbjct: 194 EIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEK 253
Query: 1010 LSKF 1013
+ K+
Sbjct: 254 VFKY 257
Score = 47 (21.6 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 15/85 (17%), Positives = 39/85 (45%)
Query: 1129 DDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEK 1188
D G +V S KK ++ + + + +K ++ + S + +++ + S+ ++ V K
Sbjct: 526 DQRGIDVDDSEKK--DSFVLDSDYEDEKEEEEVKSSTFNSSSSISSGNSSKIKKTLVSSK 583
Query: 1189 FVLAEMENPERLTPAGGGRNANNVF 1213
F ++ + GG + ++ F
Sbjct: 584 FFVSSESSVLESDDDDGGDDDDDSF 608
Score = 44 (20.5 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 13/71 (18%), Positives = 24/71 (33%)
Query: 1112 IKKAVKGITGSQSLLLM--DDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQ 1169
I K + S L+ DD + + NN N NN + + +
Sbjct: 868 ISKKAHSFSSLDSDLIFKEDDVDNLIFNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 927
Query: 1170 NNMEKSSQSQS 1180
NN ++ + +
Sbjct: 928 NNNNNNNNNNN 938
Score = 44 (20.5 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 1398 GESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVG 1437
GE S + + +V S+ SSNS +++G N G
Sbjct: 631 GELSSYGYQKNQKNFKNVNSNSSSNSSNSSNSSSGNSNSG 670
Score = 43 (20.2 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 1136 SKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVL 1191
+ + NN N NN + + + NN + +++ + K VL
Sbjct: 907 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNNNKITTPSNKSFNSIVL 962
Score = 42 (19.8 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 1136 SKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKV 1185
+ + NN N NN + + + NN ++ + K+
Sbjct: 900 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNNNKI 949
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/58 (13%), Positives = 22/58 (37%)
Query: 1124 SLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSR 1181
+L+ ++ + + NN N NN + + + NN ++ + ++
Sbjct: 891 NLIFNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNNNK 948
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 1126 LLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRE 1182
L+ ++ + + NN N NN + + + NN ++ + +
Sbjct: 892 LIFNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNNNK 948
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 1131 AGQEVSKSRKKRKNNGLEN-GNNRSQKAPKKAEESVSGAQNNMEKSSQSQS 1180
+G + + N L + G ++QK K + S +N SS S
Sbjct: 617 SGNNIQPNSNIFHNGELSSYGYQKNQKNFKNVNSNSSSNSSNSSNSSSGNS 667
>TAIR|locus:504955937 [details] [associations]
symbol:AT2G22795 "AT2G22795" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] GO:GO:0005794 EMBL:CP002685
GO:GO:0005768 GO:GO:0005802 IPI:IPI00534353 RefSeq:NP_850032.1
UniGene:At.45724 UniGene:At.74141 PRIDE:F4IKG5
EnsemblPlants:AT2G22795.1 GeneID:816810 KEGG:ath:AT2G22795
OMA:ESTCRKT Uniprot:F4IKG5
Length = 734
Score = 134 (52.2 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 138/703 (19%), Positives = 272/703 (38%)
Query: 216 MQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRG 275
+QL LL+ + L+ + + ++K K E+ +++ + K V R+ D + +
Sbjct: 21 IQLTLLLSVGIWLLYQVKHSHEK-KAQFEESAKIVVGGVDKVVKLGRK-DLIPRV----- 73
Query: 276 VAGVQTSRIASEANREFIFS-SSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGA 334
V+ E ++ + S +S GD + + VEG ++ +++ SE VS+ +N
Sbjct: 74 ---VEVDEAEDEGSKNVVESFNSGNGDDK--ENEIVEGGEENKEK-ESEGIVSNEDSNSE 127
Query: 335 SIDKSNFSSTDQSNSVTKL----GPEESRKSFADD--VETYLDERGRVRLSK--VRAMGI 386
+K + ++S K G EE+ KS ++ VE D G K +
Sbjct: 128 IEEKKDSGGVEESEVEEKRDNGGGTEENEKSGTEESEVEERKDNGGTEENEKSGTEESEV 187
Query: 387 RMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGT--SLDD 444
+D E K +E G+ ++G+ ++ EK+ GT S +
Sbjct: 188 EERKDNGGTEENEKSGTEESEVEERKENGGTEEN-EKSGSEESEVEEKKDNGGTEESREK 246
Query: 445 TNESVSSIERNKQ--STLKSGISLELSFK--DNSENNCXXXXXIFAHLAAGKPVIFPNSP 500
+ S +E K S+ +S + + + D SE + A++ + +
Sbjct: 247 SGTEESEVEEKKDNGSSEESEVEEKKENRGIDESEESKEKDIDEKANIEEARENNYKGDD 306
Query: 501 RAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAP 560
A S + V +S EE T+E + S +D +GI +E+ I + G S +
Sbjct: 307 -ASSEV-VHES--EEKTSESENSEKVED-KSGIKTE-EVEDSVIKSVLPNTTDNGESSSD 360
Query: 561 -KSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDG 619
KS+ S ++ I+ E E + LL+ N S K G+
Sbjct: 361 EKSTGSSSGHESDSLEGIKSEGESME--KNELLEKEFNDSNGESSVTGKSTGSGDGGSQE 418
Query: 620 TWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYE 679
T ++ ++ + ES + + +T +S ++ +E + E
Sbjct: 419 T---SEVSSQEESKGKESETKDKEESSSQEESKDRETETKEKEESSSQEETMDKETEAKE 475
Query: 680 PRNSDEKEMLINKPFEK-DNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTM----ELT 734
S +E +K EK ++S+ E++++ D + S E+ T E +
Sbjct: 476 KVESSSQEKNEDKETEKIESSFLEETKE-KEDETKEKEESSSQEKTEEKETETKDNEESS 534
Query: 735 EVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHD-FTAEPSCR 793
+ K + + + +E + E+ K N E ET E E +++ E S
Sbjct: 535 SQEETKDK-ENEKIEKEEASSQEESKEN-ETETKEKEESSSQEETKEKENEKIEKEESAP 592
Query: 794 TVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAE 853
T + ++ +AS +T ++ +E+ ++ +S++N T++ + E
Sbjct: 593 QEETKEKENEKIEKEESASQEETKEKETETKEKE-ESSSNESQENVN---TESEKKEQVE 648
Query: 854 ATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQ 896
EK +E+ E EQK+ E +E S E +
Sbjct: 649 ENEKKTDEDTSESSKENSVSDTEQKQSEETSEKEESNKNGETE 691
>ASPGD|ASPL0000035217 [details] [associations]
symbol:AN3186 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00485
GO:GO:0003677 GO:GO:0006281 EMBL:BN001306 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000052 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K15339 RefSeq:XP_660790.1
ProteinModelPortal:Q5B8E4 EnsemblFungi:CADANIAT00009883
GeneID:2874333 KEGG:ani:AN3186.2 HOGENOM:HOG000198967
OrthoDB:EOG4QZBVF Uniprot:Q5B8E4
Length = 822
Score = 132 (51.5 bits), Expect = 0.00017, P = 0.00017
Identities = 36/115 (31%), Positives = 59/115 (51%)
Query: 898 LLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDR----- 952
L+ +F P AP EAEA+C+ +++A +VD V+++D D +FG+ N +
Sbjct: 109 LIDLFRFPRHDAPGEAEAECSRLQMAGVVDAVMSNDVDALMFGSGFTVMNFSKEAGSGAG 168
Query: 953 --KYVETYFMQD-IEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNAIEVVNA 1003
+V +Y M D + ++ L R +I A+L G DY G+ G A E+ A
Sbjct: 169 GATHVTSYRMGDGADSNVKLDRPGMILFAMLSGGDYLPSGVPKCGSKLAAEIATA 223
>UNIPROTKB|Q9NZW4 [details] [associations]
symbol:DSPP "Dentin sialophosphoprotein" species:9606 "Homo
sapiens" [GO:0031214 "biomineral tissue development" evidence=IEA]
[GO:0071460 "cellular response to cell-matrix adhesion"
evidence=IEA] [GO:0005578 "proteinaceous extracellular matrix"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0005201 "extracellular matrix structural
constituent" evidence=TAS] [GO:0005509 "calcium ion binding"
evidence=TAS] [GO:0005518 "collagen binding" evidence=TAS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
[GO:0001503 "ossification" evidence=TAS] GO:GO:0005578
GO:GO:0005509 GO:GO:0001501 GO:GO:0005518 eggNOG:NOG12793
GO:GO:0031214 GO:GO:0001503 GO:GO:0005201 EMBL:AF163151
EMBL:AC093895 EMBL:AF094508 IPI:IPI00872967 RefSeq:NP_055023.2
UniGene:Hs.678914 ProteinModelPortal:Q9NZW4 STRING:Q9NZW4
PhosphoSite:Q9NZW4 DMDM:215273974 PaxDb:Q9NZW4 PRIDE:Q9NZW4
Ensembl:ENST00000282478 Ensembl:ENST00000399271 GeneID:1834
KEGG:hsa:1834 UCSC:uc003hqu.3 CTD:1834 GeneCards:GC04P088529
HGNC:HGNC:3054 HPA:HPA036230 MIM:125420 MIM:125485 MIM:125490
MIM:125500 MIM:605594 neXtProt:NX_Q9NZW4 Orphanet:1653
Orphanet:166260 Orphanet:166265 PharmGKB:PA27507 HOVERGEN:HBG098252
OMA:ERESKVQ OrthoDB:EOG41RPVG GenomeRNAi:1834 NextBio:7491
PMAP-CutDB:A8MUI0 ArrayExpress:Q9NZW4 Bgee:Q9NZW4 CleanEx:HS_DSPP
Genevestigator:Q9NZW4 GermOnline:ENSG00000152591 GO:GO:0071460
Uniprot:Q9NZW4
Length = 1301
Score = 119 (46.9 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 101/564 (17%), Positives = 205/564 (36%)
Query: 265 DEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEH 324
D+ K+ +G+G + S +S+++ S S D SS D S+
Sbjct: 535 DDNDKSDSGKGKSDSSDSD-SSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDS 593
Query: 325 PVSDSANNGASIDKSNFS-STDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRA 383
SDS+N+ S D S+ S S+D S+S +S KS +D ++ D + S
Sbjct: 594 DSSDSSNSSDSSDSSDSSDSSDSSDSSDS--KSDSSKSESDSSDS--DSKSDSSDSNSSD 649
Query: 384 MGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLD 443
N + + ++ + + S + + + +S + S + S D
Sbjct: 650 SSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSD 709
Query: 444 DTNESVSSIERNKQSTLKSGISLELSFKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRAH 503
+ S + S S S + S NS ++ + ++ +S +
Sbjct: 710 SDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSD 769
Query: 504 SSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSS 563
SS S SDS +++ SS S D++ N + SD S+ + + + S+
Sbjct: 770 SSDS-SDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSN 828
Query: 564 LSFPAESEKTVSNIEEEANLQEAIRRSLLDVC--IEKPNYALSEHNKCENLGENACDGTW 621
S ++S SN + ++ ++ S D + N + S + + ++ D +
Sbjct: 829 SSDSSDS----SNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSD 884
Query: 622 LYDRENNMD--DPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYE 679
+ N+ D D + +S S + + D D+ N+S+ S
Sbjct: 885 SNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDS 944
Query: 680 PRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQLV 739
+SD + D+S S + ++D + + DS + + ++
Sbjct: 945 SDSSDSSNSS-DSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSS-- 1001
Query: 740 KGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFT-AEPSCRTVGTS 798
S S+ + D N+ ++ S D + + D + + S + +S
Sbjct: 1002 NSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSS 1061
Query: 799 DTSIPLVKTSGNASIYDTDIEQKS 822
D+S + + S +D + S
Sbjct: 1062 DSSDSSDSSDSSDSSDSSDSSESS 1085
Score = 63 (27.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 1381 ESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTD 1440
+S D + D + ES S DSSD DS+ SS+S +++N ++ +D
Sbjct: 1131 DSSDSSDSSNSSDSSDSSES-SDSSDSSDSSDSSDS-SDSSDSSDSSDSSNSSDSSDSSD 1188
Query: 1441 TFDTEPNPVVQNATSTDSA-RNDAGRASRGS 1470
+ D+ + ++ S+DS+ +D+ +S S
Sbjct: 1189 SSDSSDSS--DSSDSSDSSDSSDSSDSSDSS 1217
Score = 63 (27.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 1381 ESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTD 1440
+S D + D + +S S DSSD DS+ SSNS ++++ E+ +D
Sbjct: 1101 DSSDSSDSSDSSDSSDSSDS-SNSSDSSDSSDSS----DSSDSSNSSDSSDSSESSDSSD 1155
Query: 1441 TFDTEPNPVVQNATSTDSA-RNDAGRASRGS 1470
+ D+ + ++ S+DS+ +D+ +S S
Sbjct: 1156 SSDSSDSS--DSSDSSDSSDSSDSSNSSDSS 1184
>DICTYBASE|DDB_G0288691 [details] [associations]
symbol:hook "hook family protein" species:44689
"Dictyostelium discoideum" [GO:0005813 "centrosome" evidence=TAS]
[GO:0008017 "microtubule binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=IEA] [GO:0031122 "cytoplasmic microtubule
organization" evidence=ISS] [GO:0005874 "microtubule" evidence=IEA]
[GO:0005856 "cytoskeleton" evidence=IEA] InterPro:IPR001715
InterPro:IPR008636 Pfam:PF05622 PROSITE:PS50021
dictyBase:DDB_G0288691 GO:GO:0005737 GO:GO:0005813
GenomeReviews:CM000154_GR GO:GO:0008017 GO:GO:0005874 GO:GO:0031122
EMBL:AAFI02000120 eggNOG:NOG130433 KO:K16536 OMA:LAQKCHE
RefSeq:XP_636577.1 ProteinModelPortal:Q54IK9 PRIDE:Q54IK9
EnsemblProtists:DDB0219928 GeneID:8626750 KEGG:ddi:DDB_G0288691
Uniprot:Q54IK9
Length = 734
Score = 112 (44.5 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 72/301 (23%), Positives = 124/301 (41%)
Query: 295 SSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSD--SANNGASIDKSNFSSTDQSNSVTK 352
S SF D +L+ S + + + S S +N +S + +N SS + +
Sbjct: 155 SKSFDKDGSILSQSPSQSNNSISNNNNNNNIDSSNISKSNISSNNNNNNSSNNNKEEILN 214
Query: 353 LGPE-ESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNN 411
L E E K +++ LDE ++LS V R+T D Q+ E+ + + +
Sbjct: 215 LQNEIEKLKREKQEIQNDLDE-SNIQLSNVTMDRDRITIDKQKTEEVCSSLHE------S 267
Query: 412 ITGAGSML--TLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELS 469
I G L T+ +T T A+ E K T ++D + V S E+ + S LK + E +
Sbjct: 268 IIGLQKQLDETMAQTTTMNALNDETYK---TEINDLHMQVESKEK-QLSELKKKVD-EAN 322
Query: 470 FKDNSENNCXXXXXIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEE-GTTERKGSSLSDD 528
N + I AA N+ + EE G ++K L D
Sbjct: 323 RLANENRSLRDEIDILREKAA-------NAEATEEKLKKHQKKIEEIGDLKKKIKELEDQ 375
Query: 529 ANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFP-AESEKTVSNIEEEAN-LQEA 586
++ I L+LEE +S + + SSL A+ E ++ +I+E+ + L E+
Sbjct: 376 NDSYIQQTLDLEEQ-LSKNNTYRTQADSGKQQISSLKIELAKLELSLKSIKEDRDKLSES 434
Query: 587 I 587
+
Sbjct: 435 L 435
Score = 67 (28.6 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 1086 MDKHTQLRLEAFYTFNERFAKIRSK--RIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRK 1143
+D T+ R+ N+R ++ K ++ ++ S+ LL + Q +K++
Sbjct: 489 IDGSTKERIARLERDNKRLKEVAEKASELENQLEDANQSKELLTI----QIKQLEEQKQQ 544
Query: 1144 NNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAEMENPERL 1200
+N N NN + ES+ Q EK + + +RK LE+ L+ EN ++L
Sbjct: 545 SNNTNNNNNNNNMVDSSEIESLK--QQLKEKEKEISTLKRK-LEESNLSLDENRKQL 598
Score = 42 (19.8 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 1379 HDESETREDQVAAKDPVVT 1397
H +E Q+A KD V+T
Sbjct: 647 HKSYSNQETQLATKDEVIT 665
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.309 0.127 0.351 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1484 1367 0.00088 124 3 11 23 0.37 35
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 89
No. of states in DFA: 620 (66 KB)
Total size of DFA: 529 KB (2242 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 144.04u 0.14s 144.18t Elapsed: 00:00:06
Total cpu time: 144.06u 0.14s 144.20t Elapsed: 00:00:06
Start: Sat May 11 16:12:00 2013 End: Sat May 11 16:12:06 2013