BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000457
(1484 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/966 (45%), Positives = 600/966 (62%), Gaps = 108/966 (11%)
Query: 152 HKKLDEMLAASIAAEEDGSLSNNASASAASLPLEEEDGDEDEE---MILPAMTGNVDPAV 208
+KLDEMLAAS+AAEE+ + ++ AS SAA++P EE++ ++ + ++LP M GN+DPAV
Sbjct: 224 QEKLDEMLAASLAAEEERNFTSKASTSAAAIPSEEDEEEDSDGDEEILLPVMDGNIDPAV 283
Query: 209 LAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQ 268
LA+LPPSMQLDLL QMRE+LMAENRQKYQKVKKAPEKFSELQI+AYLKTVAFRREI+EVQ
Sbjct: 284 LASLPPSMQLDLLAQMREKLMAENRQKYQKVKKAPEKFSELQIEAYLKTVAFRREINEVQ 343
Query: 269 KAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSD 328
++A GR V GVQTSRIASEANREFIFSSSF GDK+VL S+R EG+ DE Q+ S+ +
Sbjct: 344 RSAGGRAVGGVQTSRIASEANREFIFSSSFAGDKEVLASAR-EGRNDENQKKTSQQSLPV 402
Query: 329 SANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRM 388
S N + + KS+ + +L +E K+ +++E Y+DERGR R+ + R MGI+M
Sbjct: 403 SVKNASPLKKSD--------ATIELDRDEP-KNPDENIEVYIDERGRFRI-RNRHMGIQM 452
Query: 389 TRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTS-KAVPSEKRKFIGTSLDDTNE 447
TRD+QRNL +MKE E+ T +GSM +ET ++ + P+E +F+ S +
Sbjct: 453 TRDIQRNLHLMKEKER--------TASGSMAKNDETFSAWENFPTED-QFLEKS--PVEK 501
Query: 448 SVSSIE-RNKQSTLKSGISLELSF-KDNSENNCDDDDDIFAHLAAGKPVIFP---NSPRA 502
V +E +N S L S+E+SF D + +D+DD+F LAAG PV N P+
Sbjct: 502 DVVDLEIQNDDSMLHPPSSIEISFDHDGGGKDLNDEDDMFLQLAAGGPVTISSTENDPKE 561
Query: 503 HSSISVSDSDWEEGTTERKGSSLSDDANAG---INPPLNLEEGGISDESEVEWEEGPSCA 559
+S SDSDWEE E+ S +AN I +++ EG V WEE
Sbjct: 562 DTSPWASDSDWEEVPVEQNTSVSKLEANLSNQHIPKDISIAEG-------VAWEEYSCKN 614
Query: 560 PKSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCE-NLGENACD 618
+S+ ++ T +EEEA+LQEAI++SLL++ ++ L E+ NL +
Sbjct: 615 ANNSVENDTVTKITKGYLEEEADLQEAIKKSLLELHDKESGDVLEENQSVRVNLVVDKPS 674
Query: 619 GTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGIN---NSEVIGS----- 670
L RE +GE+ ++ ++D + L T G I+ N+ V G+
Sbjct: 675 EDSLCSRET-------VGEAEEER------FLDEITILKTSGAISEQSNTSVAGNADGQK 721
Query: 671 -LGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGT 729
+ ++ + S+ ++ K S S + A + A+ R L + A +
Sbjct: 722 GITKQFGTHPSSGSNNVSHAVSNKLSKVKSVI--SPEKALNVASQNRMLSTMAKQHNE-- 777
Query: 730 TMELTEVQLVKGRCLSASAKGDEHLT-HEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTA 788
E +E + +SA DE +T D+K+N + E+S++ DK++ +++ T
Sbjct: 778 --EGSESFGGESVKVSAMPIADEEITGFLDEKDNADGESSIMMDDKRDYSRRKIQSLVTE 835
Query: 789 --EPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKA 846
+PS R V S I ++DTD + + EE + + + +T F K
Sbjct: 836 SRDPS-RNVVRSRIGI----------LHDTDSQNERREENNSNEHTFNIDSSTD-FEEKG 883
Query: 847 IENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPY 906
V E +E +EEE+++LD E++ LGDEQ+KLERNAESVSSEMFAECQELLQ+FG+PY
Sbjct: 884 ---VPVEFSEANIEEEIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPY 940
Query: 907 IIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKD 966
IIAPMEAEAQCA+ME +NLVDG+VTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIEK+
Sbjct: 941 IIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIEKE 1000
Query: 967 LGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILG 1026
LGL+R+K+IRMA+LLGSDYTEGISGIGIVNAIEVV AFPEEDGL KFREW+ESPDPTILG
Sbjct: 1001 LGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPEEDGLQKFREWVESPDPTILG 1060
Query: 1027 KFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFM 1086
K D +TG+ +KR S+ D K + G S D ++ +K+IFM
Sbjct: 1061 KTDAKTGSKVKKRGSASVDN-----KGIISGASTDD---------------TEEIKQIFM 1100
Query: 1087 DKHTQL 1092
D+H ++
Sbjct: 1101 DQHRKV 1106
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 151/319 (47%), Gaps = 62/319 (19%)
Query: 1072 KQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDA 1131
K++ E + K + + TQLR+EAFY+FNERFAKIRSKRI KAVKGI G S + D
Sbjct: 1160 KKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKIRSKRINKAVKGIGGGLSSDVADHT 1219
Query: 1132 GQEVSKSRKKRKNNGLEN-GNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFV 1190
QE + R K+K E NN S K A E V + +EK S S
Sbjct: 1220 LQEGPRKRNKKKVAPHETEDNNTSDKDSPIANEKVKNKRKRLEKPSSS------------ 1267
Query: 1191 LAEMENPERLTPAGGGRNANNVFRGNRRGKGQRVGRGRGR-RRLCAEQSETSSSDDIGSD 1249
RG RG+ Q+ GRGRGR ++ E S+ SS DD D
Sbjct: 1268 -----------------------RG--RGRAQKRGRGRGRVQKDLLELSDGSSDDDDDDD 1302
Query: 1250 DTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVGKILSNKESSNEEEAKQDSVHG 1309
E ++ +++STRSR PV Y+ + + D + S N EE + +
Sbjct: 1303 KVVELEAKP----ANLQKSTRSRNPVMYSAKEDDELDESRSNEGSPSENFEEVDEGRI-- 1356
Query: 1310 VTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDD-QEIGQPSVSPCDDPFLEAEITK 1368
+ S D S D PS +DYI+ GGGFC D+ EIG D LE + T
Sbjct: 1357 -GNDDSVDASIN-----DCPS--EDYIQTGGGFCADEADEIG--------DAHLEDKATD 1400
Query: 1369 DYMKMGGGFCHDESETRED 1387
DY +GGGFC DE ET E+
Sbjct: 1401 DYRVIGGGFCVDEDETAEE 1419
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 40 VSASDDKENLDEMLAASIAAEANESSSKSASKSATA----NLLEEDGDEDEEIILPTMGG 95
V D +E LDEMLAAS+AAE + + AS SA A EED D DEEI+LP M G
Sbjct: 218 VQGKDYQEKLDEMLAASLAAEEERNFTSKASTSAAAIPSEEDEEEDSDGDEEILLPVMDG 277
Query: 96 NVDPAVFAALPPSMQHQLLVR 116
N+DPAV A+LPPSMQ LL +
Sbjct: 278 NIDPAVLASLPPSMQLDLLAQ 298
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus laevis
GN=ercc5 PE=2 SV=1
Length = 1196
Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 150/259 (57%), Gaps = 23/259 (8%)
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
ER A +V+ +M E QELLQ+FG+PYI+APMEAEAQCA ++L + G +TDDSD++LFG
Sbjct: 791 ERIAATVTGQMCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFG 850
Query: 941 ARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEV 1000
AR VYKN F K+VE Y DI LGL R KLI +A LLGSDYTEGI +G V+A+E+
Sbjct: 851 ARHVYKNFFSQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI 910
Query: 1001 VNAFPEE--DGLSKFREWIES--------PDPT------ILGKFDVQTGASSRKRRSSDG 1044
+N FP + + L KF+EW P+P L D+Q + S+
Sbjct: 911 LNEFPGQGLEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLDLQQSFPNPAVASAYL 970
Query: 1045 DKDVNYAKNSVGGVSEFDESISQFDEDK------QSAEYSQNMKKIFMDKHTQLRLEAFY 1098
V+ +K++ E I +F E + ++ E + K + TQLR+++F+
Sbjct: 971 KPVVDESKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLPVLKQLNAQQTQLRIDSFF 1030
Query: 1099 TFNER-FAKIRSKRIKKAV 1116
+ A ++S+R+++AV
Sbjct: 1031 RLEQHEAAGLKSQRLRRAV 1049
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus
GN=Ercc5 PE=1 SV=4
Length = 1170
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 41/323 (12%)
Query: 873 LGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTD 932
L ++++ +R A SV+ +MF E QELL++FG+PYI APMEAEAQCA ++L + G +TD
Sbjct: 749 LKAQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITD 808
Query: 933 DSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGI 992
DSD++LFGAR VYKN F+ K+VE Y D LGL R KLI +A LLGSDYTEGI +
Sbjct: 809 DSDIWLFGARHVYKNFFNKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTV 868
Query: 993 GIVNAIEVVNAFPEE--DGLSKFREWI----------ESPDPTILGK----------FDV 1030
G V A+E++N FP D L KF EW E+P T + K F
Sbjct: 869 GCVTAMEILNEFPGRGLDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPN 928
Query: 1031 QTGASSRKRRSSDGDK-DVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKH 1089
A + R D + + K V +S F + ++ K +K ++ H
Sbjct: 929 PAVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYPVLKH--LNAH 986
Query: 1090 -TQLRLEAFYTFNERFAK----IRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKN 1144
TQLR+++F+ ++ + I+S R+ +AV I + ++ E++K
Sbjct: 987 QTQLRIDSFFRLAQQEKQDAKLIKSHRLNRAVTCILRKER----EEKAPELTKV-----T 1037
Query: 1145 NGLENGNNRSQK--APKKAEESV 1165
L++ ++QK P K E SV
Sbjct: 1038 EALDDAKGKTQKRELPYKKETSV 1060
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens GN=ERCC5
PE=1 SV=3
Length = 1186
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 153/287 (53%), Gaps = 32/287 (11%)
Query: 861 EEMQILDHEYMY----LGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQ 916
EE++ L+ + L ++++ ER A +V+ +MF E QELL++FG+PYI APMEAEAQ
Sbjct: 734 EELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQ 793
Query: 917 CAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIR 976
CA ++L + G +TDDSD++LFGAR VY+N F+ K+VE Y D LGL R KLI
Sbjct: 794 CAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDFHNQLGLDRNKLIN 853
Query: 977 MALLLGSDYTEGISGIGIVNAIEVVNAFPEE--DGLSKFREWIES--------PDP---- 1022
+A LLGSDYTEGI +G V A+E++N FP + L KF EW P+P
Sbjct: 854 LAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQKNPKIRPNPHDTK 913
Query: 1023 ---------TILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQ 1073
G + + K D + K + + EF + ++ K
Sbjct: 914 VKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKT 973
Query: 1074 SAEYSQNMKKIFMDKHTQLRLEAFYTF----NERFAKIRSKRIKKAV 1116
+K++ + TQLR+++F+ E +I+S+R+ +AV
Sbjct: 974 DESLFPVLKQLDA-QQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAV 1019
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad13 PE=2 SV=2
Length = 1112
Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 28/237 (11%)
Query: 848 ENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYI 907
E + EA EK L+E L ++++ +R+A+ V+ M ECQELL++FGLPYI
Sbjct: 724 EEWNQEAFEKRLKE-----------LKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYI 772
Query: 908 IAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDL 967
+AP EAEAQC+ + LVDG+VTDDSDVFLFG VY+N+F+ K+VE Y M D++++
Sbjct: 773 VAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNMFNQNKFVELYLMDDMKREF 832
Query: 968 GLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGK 1027
+ + LI++A LLGSDYT G+S +G V A+E+++ FP + GL +F++W +
Sbjct: 833 NVNQMDLIKLAHLLGSDYTMGLSRVGPVLALEILHEFPGDTGLFEFKKWFQR-------- 884
Query: 1028 FDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEF-----DESISQ--FDEDKQSAEY 1077
+ TG +S+ ++ K +N + SEF DE+ D+ KQS ++
Sbjct: 885 --LSTGHASKNDVNTPVKKRINKLVGKIILPSEFPNPLVDEAYLHPAVDDSKQSFQW 939
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD2 PE=1 SV=2
Length = 1031
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 107/157 (68%), Gaps = 9/157 (5%)
Query: 873 LGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTD 932
L ++Q K +R+++ V+ +M E QELL FG+PYI APMEAEAQCA + NLVDG++TD
Sbjct: 753 LFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITD 812
Query: 933 DSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGI 992
DSDVFLFG +YKN+F ++ YVE Y + I K LGL R+ +I +A LLGSDYT G+ G+
Sbjct: 813 DSDVFLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGM 872
Query: 993 GIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFD 1029
G V++IEV+ F L F++W + G+FD
Sbjct: 873 GPVSSIEVIAEF---GNLKNFKDWYNN------GQFD 900
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
++ S + EC E+L+ G+P++ A EAEA CAY+ + VDG +T+D D FL+G
Sbjct: 103 QKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYG 162
Query: 941 ARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNA 997
A++VY+N + K +V+ Y + I+ LGL R+ L+ +A+LLG DY +G+ G+G A
Sbjct: 163 AQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQA 222
Query: 998 IEVVNAFPEEDGLSKFREWIESP 1020
++++ F + L +F +WIE P
Sbjct: 223 LKLLQIFKGQSLLQRFNQWIEDP 245
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica GN=SEND1
PE=2 SV=1
Length = 641
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 880 LERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLF 939
L RN S S M E + L G+P + EAEAQCA ++L +L DG T DSD FLF
Sbjct: 112 LRRNKGSEFSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLF 171
Query: 940 GARSVYKNIF-DDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAI 998
GAR+VY+++F + YV Y M+DIEK LG R LI +A+LLGSDY+ G++G G A
Sbjct: 172 GARTVYRDVFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETAC 231
Query: 999 EVVNA 1003
+V +
Sbjct: 232 RLVKS 236
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 881 ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFG 940
++ S + EC +L+ G+P++ A EAEA CAY+ VDG +T+D D FL+G
Sbjct: 103 QKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYG 162
Query: 941 ARSVYKNIFDDRK--YVETYFMQDIEKDLGLTREKLIRMALLLGSDYT-EGISGIGIVNA 997
A++VY+N + K +V+ Y M I+ LGL R+ L+ +A+LLG DY +G+ G+G A
Sbjct: 163 AQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQA 222
Query: 998 IEVVNAFPEEDGLSKFREWIES 1019
++++ + L +F W E+
Sbjct: 223 LKLIQILKGQSLLQRFNRWNET 244
>sp|Q9LPD2|GENL1_ARATH Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2
SV=3
Length = 599
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 880 LERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLF 939
+ERN + SE EC ELL++ G+P + A EAEA CA + VD +T DSD FLF
Sbjct: 110 VERN--KLFSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLF 167
Query: 940 GARSVYKNIF-DDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDY-TEGISGIGIVNA 997
GA V K+I + R+ E Y M IE LGL R+ LI ++LL+G+DY + G+ GIG+ A
Sbjct: 168 GAMCVIKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKA 227
Query: 998 IEVVNAFPEEDGLSKFREWIESPDPTILG 1026
+ +V F E+ L + ++ P + G
Sbjct: 228 LRIVREFSEDQVLERLQDIGNGLQPAVPG 256
>sp|A7UW97|FEN1_NEUCR Flap endonuclease 1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fen-1
PE=3 SV=2
Length = 394
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 27/236 (11%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E AECQ+LL++ G+PYI+AP EAEAQCA + A V ++D D
Sbjct: 125 KFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLC 184
Query: 939 FGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
F A + +++ F +++ ++ ++ + + LG+ R++ I + +LLG DY + I +G
Sbjct: 185 FNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDPIPKVGPS 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDV------- 1048
A++++ E L K EW+++ DP G++ + R+ + DV
Sbjct: 245 TALKLIR---EHGTLEKVVEWMKA-DPK--GRYQIPEDWPFEDARTLFFEPDVRPADDPL 298
Query: 1049 ---NYAKNSVGGVSEFDESISQFDEDK---QSAEYSQNMKKIFMDKHTQLRLEAFY 1098
+ K + G+ +F F ED+ + +NMK Q R+E F+
Sbjct: 299 CDFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMK-----TSQQARIEGFF 349
>sp|Q64MA3|GENL1_ORYSJ Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica GN=RAD
PE=2 SV=1
Length = 629
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 894 ECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRK 953
+C ELL+ G+P + A E EA CA + VD +T DSD FLFGA++V K + + K
Sbjct: 130 DCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLRSNCK 189
Query: 954 -YVETYFMQDIEKDLGLTREKLIRMALLLGSDY-TEGISGIGIVNAIEVVNAFPEEDGLS 1011
E Y M DIE LGL R++++ MALL+GSD+ G+ G G A+ V F E++ L+
Sbjct: 190 EPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQLFDEDNVLA 249
Query: 1012 KFRE 1015
K E
Sbjct: 250 KLYE 253
>sp|Q9M2Z3|GENL2_ARATH Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2
SV=2
Length = 600
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 880 LERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLF 939
L+RN S S + E + + G+ + EAEAQCA + +L D + DSD+FLF
Sbjct: 110 LKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLF 169
Query: 940 GARSVYKNI-FDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAI 998
GA++VY+ I + YV Y M DI+K LGL R LI +ALLLGSDY++G+ G+ A
Sbjct: 170 GAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKAC 229
Query: 999 EVVNAF 1004
E+V +
Sbjct: 230 ELVRSI 235
>sp|C7Z125|FEN1_NECH7 Flap endonuclease 1 OS=Nectria haematococca (strain 77-13-4 / ATCC
MYA-4622 / FGSC 9596 / MPVI) GN=FEN1 PE=3 SV=1
Length = 395
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 27/236 (11%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E AECQ LL++ G+PYIIAP EAEAQCA + A V ++D D
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLC 184
Query: 939 FGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
F + + +++ F +++ ++ ++ + + LG+ R++ + + +LLG DY + I +G
Sbjct: 185 FNSPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFVDLCILLGCDYLDPIPKVGPT 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRK----------RRSSDGD 1045
A++++ + L K E +E DP K+ + + R++ D +
Sbjct: 245 TALKLIR---DHGSLEKIVEAMEK-DPK--KKYVLPEDWPYKDARDLFFEPDVRKADDPE 298
Query: 1046 KDVNYAKNSVGGVSEFDESISQFDEDKQ---SAEYSQNMKKIFMDKHTQLRLEAFY 1098
DV + K + G+ +F + F ED+ A +N+K Q RLE F+
Sbjct: 299 CDVKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLK-----SSQQARLEGFF 349
>sp|D1ZT73|FEN1_SORMK Flap endonuclease 1 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM
997 / K(L3346) / K-hell) GN=FEN1 PE=3 SV=1
Length = 394
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 31/238 (13%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E AECQ+LL++ G+PYI+AP EAEAQCA + A V ++D D
Sbjct: 125 KFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLC 184
Query: 939 FGARSVYKNIFDDRKYVETYFMQDIEKD-----LGLTREKLIRMALLLGSDYTEGISGIG 993
F + +++ + E +Q+I D LG+ R++ + + +LLG DY + I +G
Sbjct: 185 FHTPILLRHLTFSEQRKEP--IQEIHTDKVLEGLGMDRKQFVDLCILLGCDYLDPIPKVG 242
Query: 994 IVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDV----- 1048
A++++ E L + EW+++ DP G++ + R+ + DV
Sbjct: 243 PSTALKLIR---EHGTLEEVVEWMKA-DPK--GRYQIPEDWPFEDARALFFEPDVRPADD 296
Query: 1049 -----NYAKNSVGGVSEFDESISQFDEDK---QSAEYSQNMKKIFMDKHTQLRLEAFY 1098
+ K + G+ +F F ED+ S + +NM+ Q R+E F+
Sbjct: 297 PLCDFKWEKPDIEGLVQFLAHEKGFSEDRVRSASIKLQKNMQ-----TSQQARIEGFF 349
>sp|O93634|FEN_PYRFU Flap endonuclease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=fen PE=1 SV=1
Length = 340
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 15/154 (9%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E +K + A V+ + + ++LL++ G+P + AP E EAQ AYM V + D
Sbjct: 115 EEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDY 174
Query: 935 DVFLFGARSVYKN--IFDDRK------YVET----YFMQDIEKDLGLTREKLIRMALLLG 982
D LFGA + +N I RK YVE ++++ K+L LTREKLI +A+L+G
Sbjct: 175 DSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVG 234
Query: 983 SDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFRE 1015
+DY GI GIG+ A+E+V +D L+KF++
Sbjct: 235 TDYNPGGIKGIGLKKALEIVRH--SKDPLAKFQK 266
>sp|B7XHS8|FEN1_ENTBH Flap endonuclease 1 OS=Enterocytozoon bieneusi (strain H348) GN=FEN1
PE=3 SV=1
Length = 358
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 894 ECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNI---FD 950
ECQ+ L++ +PY+IAP EAEA CA++ + VD V T+D D FG+ + +N
Sbjct: 139 ECQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDMDSLCFGSPLLLRNFNTALS 198
Query: 951 DRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGL 1010
+ VE Y + I + L T E+ + + +LLG DY+ I G+G+ A E + + D L
Sbjct: 199 QKLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRGVGMKRAFEYIKKYKSIDNL 258
>sp|C3ZBT0|FEN1_BRAFL Flap endonuclease 1 OS=Branchiostoma floridae GN=FEN1 PE=3 SV=1
Length = 380
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K ++ V+ E AEC++LL + G+PY+ AP EAEAQCA + V T+D DV
Sbjct: 125 KFQKRLVKVTKEHNAECKKLLTLMGIPYVDAPCEAEAQCAELAKKGKVYAAGTEDMDVLT 184
Query: 939 FGARSVYKNI-FDD-RKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
FG + +++ F + RK ++ Y+ + +L LT+++ I + +LLG DY + I GIG
Sbjct: 185 FGTNIMLRHLTFSEARKMPIKEYYYDRLLAELDLTQDQFIDLCILLGCDYCDSIRGIGPK 244
Query: 996 NAIEVVNAF 1004
AIE++ +
Sbjct: 245 RAIELIRQY 253
>sp|B4J6M4|FEN1_DROGR Flap endonuclease 1 OS=Drosophila grimshawi GN=Fen1 PE=3 SV=1
Length = 388
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 46/249 (18%)
Query: 874 GDEQK--KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
GDE + K R V+ E E +ELL++ G+PY+ AP EAEAQCA + A V T
Sbjct: 118 GDEAQIEKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 932 DDSDVFLFGARSV--YKNIFDDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEG 988
+D D FG+ + Y + RK V+ + + + L LT ++ I + +L+G DY E
Sbjct: 178 EDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCES 237
Query: 989 ISGIGIVNAIEVVNAF-----------------PEEDGLSKFREWIESPDPTILGKFDVQ 1031
I G+G AIE++ ++ PE + RE PD
Sbjct: 238 IRGVGPKRAIELIKSYRDIETILENIDTNKYAVPENWNYKRARELFIEPD---------V 288
Query: 1032 TGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDK--H 1089
T AS+ + +D D+D G+ +F QF+E++ KK+ K
Sbjct: 289 TDASTIDLKWTDPDED---------GLVQFLCGDRQFNEER----VRNGAKKLLKSKQAQ 335
Query: 1090 TQLRLEAFY 1098
TQ+RL++F+
Sbjct: 336 TQVRLDSFF 344
>sp|C6A1U9|FEN_THESM Flap endonuclease 1 OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=fen PE=3 SV=1
Length = 340
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E KK + A ++ + + ++LL++ G+P++ AP E EAQ AYM V + D
Sbjct: 115 EEAKKYAQRASKINEILIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDY 174
Query: 935 DVFLFGARSVYKN--IFDDRK------YVET----YFMQDIEKDLGLTREKLIRMALLLG 982
D LFG + +N I RK Y+E ++D+ K+L LTREKLI +A+L+G
Sbjct: 175 DSLLFGTPKLVRNLTITGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVG 234
Query: 983 SDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFRE 1015
+DY GI G+G A+E+V +D LSK+++
Sbjct: 235 TDYNPGGIKGLGPKKALEIVKY--SKDPLSKYQK 266
>sp|B8MNF2|FEN1_TALSN Flap endonuclease 1 OS=Talaromyces stipitatus (strain ATCC 10500 /
CBS 375.48 / QM 6759 / NRRL 1006) GN=fen1 PE=3 SV=2
Length = 395
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 31/243 (12%)
Query: 874 GDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDD 933
++ +K R V+ E EC++LL++ G+PYI AP EAEAQCA + A V ++D
Sbjct: 120 AEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 934 SDVFLFGARSVYKNIFDDRKYVETYFMQDIEKD-----LGLTREKLIRMALLLGSDYTEG 988
D F A + +++ + E +Q+I D LG+ R++ I + +LLG DY E
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEP--IQEIHLDKALEGLGMDRKQFIDLCILLGCDYLEP 237
Query: 989 ISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRK---------- 1038
I +G A++++ E L K E IES DP K+ + ++
Sbjct: 238 IPKVGPNTALKLIR---EHGSLEKVVEAIES-DPK--KKYVIPDDWPYKEARELFFNPDV 291
Query: 1039 RRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQ---SAEYSQNMKKIFMDKHTQLRLE 1095
R++ D D + V G+ +F + F ED+ +A ++N+K Q RLE
Sbjct: 292 RKADDPQCDFKWESPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSA-----QQSRLE 346
Query: 1096 AFY 1098
F+
Sbjct: 347 GFF 349
>sp|O27670|FEN_METTH Flap endonuclease 1 OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=fen PE=3 SV=1
Length = 328
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 26/232 (11%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
D KK + +SSE+ + LL++ G+PY+ AP E EAQ +YM V + D
Sbjct: 115 DRAKKYAVRSSRMSSEILESSKRLLELLGIPYVQAPGEGEAQASYMVKMGDAWAVASQDY 174
Query: 935 DVFLFGARSVYKNI-----FDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGI 989
D LFGA V +N+ +D + +E ++ ++L ++ +L+ MALL+G+D+ EG+
Sbjct: 175 DCLLFGAPRVVRNLTLSGKLEDPEIIE---LESTLRELSISHTQLVDMALLVGTDFNEGV 231
Query: 990 SGIGIVNAIEVVNAFPEEDGLSKFREWIES---PDPTILGKFDVQTGASSRKRRSSDGDK 1046
GIG ++++ E+ + K +E+ DP +L + ++ S D
Sbjct: 232 KGIGARRGLKLIR---EKGDIFKVIRDLEADIGGDPQVLRRIFLEPEVSE--------DY 280
Query: 1047 DVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFY 1098
++ + K V GV EF + F ED+ A +KK TQ LE ++
Sbjct: 281 EIRWRKPDVEGVIEFLCTEHGFSEDRVRA----ALKKFEGASSTQKSLEDWF 328
>sp|B4LM90|FEN1_DROVI Flap endonuclease 1 OS=Drosophila virilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 46/250 (18%)
Query: 874 GDEQK--KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
GDE + K R V+ E E +ELL++ G+PY+ AP EAEAQCA + A V T
Sbjct: 118 GDEAEIDKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 932 DDSDVFLFGARSV--YKNIFDDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEG 988
+D D FG+ + Y + RK V+ + + + L LT ++ I + +L+G DY E
Sbjct: 178 EDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCES 237
Query: 989 ISGIGIVNAIEVVNAF-----------------PEEDGLSKFREWIESPDPTILGKFDVQ 1031
I G+G AIE++ ++ PE + RE PD
Sbjct: 238 IKGVGPKRAIELIKSYRDIETILENIDTSKYPVPENWNYKRARELFIEPD---------V 288
Query: 1032 TGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDK--H 1089
AS+ + ++ D+D G+ +F QF+E++ KK+ K
Sbjct: 289 ADASAIDLKWTEPDED---------GLVQFLCGDRQFNEER----VRNGAKKLLKSKQAQ 335
Query: 1090 TQLRLEAFYT 1099
TQ+RL++F+T
Sbjct: 336 TQVRLDSFFT 345
>sp|D3TQJ5|FEN1_GLOMM Flap endonuclease 1 OS=Glossina morsitans morsitans GN=Fen1 PE=2 SV=1
Length = 382
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 32/236 (13%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E E +ELL++ G+PY+ AP EAEAQCA + A V T+D D
Sbjct: 125 KFNRRLVKVTKEHANEAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALT 184
Query: 939 FGARSVYKNI-FDD-RKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
FG+ + +++ F + RK V+ + + GLT ++ I + +LLG DY +GI GIG
Sbjct: 185 FGSGILLRHLTFSEARKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRGIGPK 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTG-----------ASSRKRRSSDG 1044
A E++N++ + + E I+ T+ ++ Q SS + + D
Sbjct: 245 RATELMNSYKD---IETILEKIDRKKYTVPEDWNYQIARELFVNPEVADPSSLELKWFDP 301
Query: 1045 DKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDK--HTQLRLEAFY 1098
D+D G+ F QF+ED+ + KKI K TQ RL++F+
Sbjct: 302 DED---------GLVRFFCGDRQFNEDRVRS----GAKKILKCKSSQTQGRLDSFF 344
>sp|Q5ZLN4|FEN1_CHICK Flap endonuclease 1 OS=Gallus gallus GN=FEN1 PE=2 SV=1
Length = 381
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K + V+ + EC++LL + G+PY+ AP EAEA CA + A V T+D D
Sbjct: 125 KFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLT 184
Query: 939 FGARSVYKNIF--DDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
FG+ + +++ + +K ++ + + + +DLGLT E+ + + +LLG DY E I GIG
Sbjct: 185 FGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIRGIGPK 244
Query: 996 NAIEVVN 1002
A+E++
Sbjct: 245 RAVELIK 251
>sp|B2VTT3|FEN1_PYRTR Flap endonuclease 1 OS=Pyrenophora tritici-repentis (strain
Pt-1C-BFP) GN=fen1 PE=3 SV=2
Length = 395
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 23/234 (9%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E ECQ LL++ G+PYI+AP EAEAQCA + V ++D D
Sbjct: 125 KFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASEDMDTLT 184
Query: 939 FGARSVYKNI-FDDRK---YVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGI 994
F + +++ F +++ +E + + +E L + R++ I + +LLG DY + I GIG
Sbjct: 185 FDTPILLRHLTFSEQRKEPILEIHLDKVLE-GLQMERKQFIDLCILLGCDYLDPIKGIGP 243
Query: 995 VNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSR-------KRRSSDGDKD 1047
A++++ E + L E I+S L D A +R R + D + D
Sbjct: 244 STALKLIR---EHNDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVRPADDPECD 300
Query: 1048 VNYAKNSVGGVSEFDESISQFDEDKQ---SAEYSQNMKKIFMDKHTQLRLEAFY 1098
+ V G+ +F F+ED+ +A+ +NMK Q RLE F+
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTA-----QQSRLEGFF 349
>sp|Q9V0P9|FEN_PYRAB Flap endonuclease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=fen
PE=3 SV=1
Length = 343
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 17/169 (10%)
Query: 861 EEMQILDHEYMYLGD--EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCA 918
EE +I E + GD E +K + A V+ + + ++LLQ+ G+P + AP E EAQ A
Sbjct: 99 EEAEIKWKEALAKGDIEEARKYAQRATKVNEMLIEDAKKLLQLMGIPIVQAPSEGEAQAA 158
Query: 919 YMELANLVDGVVTDDSDVFLFGARSVYKN--IFDDRK------YVET----YFMQDIEKD 966
YM V + D D LFG + +N I RK YVE ++++ K+
Sbjct: 159 YMAGKGDVYASASQDYDSLLFGTPRLVRNLTITGKRKMPGKDIYVEIKPELIVLEEVLKE 218
Query: 967 LGLTREKLIRMALLLGSDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFR 1014
L +TREKLI +A+L+G+DY GI GIG A+E+V +D L+KF+
Sbjct: 219 LKITREKLIELAILVGTDYNPGGIKGIGPKKALEIVKY--SKDPLAKFQ 265
>sp|O50123|FEN_PYRHO Flap endonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=fen PE=1
SV=1
Length = 343
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 15/153 (9%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E +K + A V+ + + ++LLQ+ G+P I AP E EAQ AYM V + D
Sbjct: 115 EEARKYAQRATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDY 174
Query: 935 DVFLFGARSVYKN--IFDDRK------YVET----YFMQDIEKDLGLTREKLIRMALLLG 982
D LFGA + +N I RK YVE + ++ K+L +TREKLI +A+L+G
Sbjct: 175 DSLLFGAPRLIRNLTITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVG 234
Query: 983 SDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFR 1014
+DY G+ GIG A+E+V D L+KF+
Sbjct: 235 TDYNPGGVKGIGPKKALEIVRY--SRDPLAKFQ 265
>sp|P39749|FEN1_MOUSE Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 SV=1
Length = 378
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 852 AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 911
A+ +E+ E E Q+ + + +E +K + V+ + EC+ LL + G+PY+ AP
Sbjct: 96 AKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS 155
Query: 912 EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLG 968
EAEA CA + A V T+D D FG+ + +++ + +K ++ + + + ++LG
Sbjct: 156 EAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELG 215
Query: 969 LTREKLIRMALLLGSDYTEGISGIGIVNAIEVVN 1002
L +E+ + + +LLGSDY E I GIG A++++
Sbjct: 216 LNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQ 249
>sp|Q7Q323|FEN1_ANOGA Flap endonuclease 1 OS=Anopheles gambiae GN=Fen1 PE=3 SV=2
Length = 383
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 26/233 (11%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E +ELL++ G+PY+ AP EAEAQCA + A V T+D D
Sbjct: 125 KFNRRLVKVTKHHANEAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATATEDMDALT 184
Query: 939 FGARSVYKNI-FDD-RKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
FG+ + +++ F + RK V+ + + + K LT+++ I + +LLG DY + I GIG
Sbjct: 185 FGSNILLRHLTFSEARKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDTIRGIGPK 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRS-------SDGDK-D 1047
AIE++N + + K E ++ K+ V G + + R D D +
Sbjct: 245 KAIELIN---KHRSIEKILEHLDRQ------KYIVPEGWNYEQARKLFKEPEVQDADTIE 295
Query: 1048 VNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKH--TQLRLEAFY 1098
+ +++ G+ +F QF+ED+ KKI K+ TQ RL++F+
Sbjct: 296 LKWSEPDEEGLVKFLCGDRQFNEDR----IRSGAKKILKTKNTATQGRLDSFF 344
>sp|A8J2Z9|FEN1_CHLRE Flap endonuclease 1 OS=Chlamydomonas reinhardtii GN=FEN1 PE=3 SV=1
Length = 396
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)
Query: 874 GDEQ--KKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
GD++ +K + + V+ E EC+ LL++ G+P + AP EAEAQCA M + LV G+ T
Sbjct: 119 GDQEAIEKYSKRSVRVTREHNDECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGLVYGLAT 178
Query: 932 DDSDVFLFGARSVYKNIFDDRKY---VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEG 988
+D D FGA V +++ V+ + + ++L LT ++ I + +L+G DY
Sbjct: 179 EDMDALTFGAPRVIRHLMAPSSQNVPVQEFDREVALRELELTDDQFIDLCILMGCDYCGT 238
Query: 989 ISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDV 1048
I GIG V A++++ +G+ K + + P P + + + S +
Sbjct: 239 IRGIGAVRALQMIKKHGSIEGMLKELDPAKYPVPEPFPHKESHEFFKNPEVTPSAEIPPL 298
Query: 1049 NYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYT 1099
+ G+ +F + QF+E Q + K K Q RLE+F+T
Sbjct: 299 KWTAPDEEGLVQFLVNEKQFNE--QRVRNAVGRIKANKTKANQGRLESFFT 347
>sp|A5ABU3|FEN1_ASPNC Flap endonuclease 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC
A1513) GN=fen1 PE=3 SV=1
Length = 395
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 27/236 (11%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E AEC++LL++ G+PYI AP EAEAQCA + A V ++D D
Sbjct: 125 KFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLC 184
Query: 939 FGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
F + +++ F +++ ++ + + LG+ R++ I + +LLG DY E I +G
Sbjct: 185 FETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPN 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDV----------QTGASSRKRRSSDGD 1045
A++++ + L K E++E+ DP KF V + + R ++D +
Sbjct: 245 TALKLIR---DHGSLEKVLEFMEN-DPK--KKFVVPEDWPYEDARELFLNPDVRDANDPE 298
Query: 1046 KDVNYAKNSVGGVSEFDESISQFDEDKQ---SAEYSQNMKKIFMDKHTQLRLEAFY 1098
D + V G+ +F F+ED+ +A +N+K Q RLE F+
Sbjct: 299 CDFKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSA-----QQSRLEGFF 349
>sp|B8NV37|FEN1_ASPFN Flap endonuclease 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC
A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=fen1 PE=3
SV=1
Length = 395
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 25/235 (10%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ + AEC++LL++ G+PYI AP EAEAQCA + A V ++D D
Sbjct: 125 KFSRRTVRVTRDHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLC 184
Query: 939 FGARSVYKNI-FDDRK---YVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGI 994
F A + +++ F +++ +E + + +E L + R++ I + +LLG DY E I +G
Sbjct: 185 FEAPILLRHLTFSEQRKEPILEIHLSRALE-GLDMDRKQFIDLCILLGCDYLEPIPKVGP 243
Query: 995 VNAIEVVNAFPEEDGLSKFREWIESPDP----TILGKFDVQTG----ASSRKRRSSDGDK 1046
A++++ F L K E +ES DP I + Q + R +S D
Sbjct: 244 NTALKLIREF---GSLEKVVEHMES-DPKKKYVIPEDWPYQDARELFLNPDVREASHPDC 299
Query: 1047 DVNYAKNSVGGVSEFDESISQFDEDKQ---SAEYSQNMKKIFMDKHTQLRLEAFY 1098
D + + G+ EF F+ED+ +A +N+K Q RLE F+
Sbjct: 300 DFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTA-----QQSRLEGFF 349
>sp|Q5JGN0|FEN_PYRKO Flap endonuclease 1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918
/ JCM 12380 / KOD1) GN=fen PE=3 SV=1
Length = 340
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 15/154 (9%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E KK A V+ E+ + ++LL++ G+P + AP E EAQ AYM V + D
Sbjct: 115 EEAKKYAMRATRVNEELINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDY 174
Query: 935 DVFLFGARSVYKN--IFDDRK------YVET----YFMQDIEKDLGLTREKLIRMALLLG 982
D LFGA + +N I RK YVE ++++ K+LG+ REKLI +A+L+G
Sbjct: 175 DSLLFGAPRLVRNLTITGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVG 234
Query: 983 SDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFRE 1015
+DY GI GIG A+ +V +D L+K+++
Sbjct: 235 TDYNPGGIKGIGPKKALTIVKR--TKDPLAKYQK 266
>sp|A7RRJ0|FEN1_NEMVE Flap endonuclease 1 OS=Nematostella vectensis GN=FEN1 PE=3 SV=1
Length = 377
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E EC++LL++ G+PY+ AP EAEAQCA + + V T+D D
Sbjct: 125 KFSRRLVRVTKEHNEECKQLLKLMGIPYVEAPCEAEAQCAALVKSGKVYATGTEDMDALT 184
Query: 939 FGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
FG + +++ F + K ++ + +Q++ + GL++++ I + +LLG DY + I GIG
Sbjct: 185 FGTTVMLRHLTFSEAKKMPIKEFHLQNVLSEAGLSQDEFIDLCILLGCDYCDSIKGIGPK 244
Query: 996 NAIEVV 1001
+++++
Sbjct: 245 RSVDLI 250
>sp|B3MDA3|FEN1_DROAN Flap endonuclease 1 OS=Drosophila ananassae GN=Fen1 PE=3 SV=1
Length = 388
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSD 935
E +K R V+ E E +ELL++ G+PY+ AP EAEAQCA + A V T+D D
Sbjct: 122 EIEKFNRRLVRVTKEHAREAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMD 181
Query: 936 VFLFGARSV--YKNIFDDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGI 992
FG+ + Y + RK V+ + + + LG+ + I + +LLG DY E I GI
Sbjct: 182 ALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCESIKGI 241
Query: 993 GIVNAIEVVNAF 1004
G AIE++N +
Sbjct: 242 GPKRAIELINNY 253
>sp|P53695|EXO1_SCHPO Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo1 PE=1 SV=1
Length = 571
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 887 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSV-- 944
V+ EM + L+ G+ I+AP EA+AQ Y+E N++DG++T+DSD+ +FGA++V
Sbjct: 125 VTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLVFGAQTVLF 184
Query: 945 ----YKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEV 1000
+ N R+ + QD+ +L L EKL MA+ G DYT+G++G+G+ A+
Sbjct: 185 KMDGFGNCITIRRN-DIANAQDL--NLRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRY 241
Query: 1001 VNAFPE 1006
+ +PE
Sbjct: 242 LQKYPE 247
>sp|Q0CBS0|FEN1_ASPTN Flap endonuclease 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC
A1156) GN=fen1 PE=3 SV=2
Length = 395
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 23/234 (9%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E AEC++LL++ G+PYI AP EAEAQCA + A V ++D D
Sbjct: 125 KFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLC 184
Query: 939 FGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
F A + +++ F +++ ++ + + L + R K I + +LLG DY E I +G
Sbjct: 185 FEAPILLRHLTFSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLGCDYLEPIPKVGPN 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDP----TILGKFDVQTG----ASSRKRRSSDGDKD 1047
A++++ + L K E+I++ DP I + Q R ++D + D
Sbjct: 245 TALKLIR---DHGSLEKVVEYIQN-DPKKKYVIPEDWPYQDARELFLHPDVRDANDPECD 300
Query: 1048 VNYAKNSVGGVSEFDESISQFDEDKQ---SAEYSQNMKKIFMDKHTQLRLEAFY 1098
+ + G+ EF F+ED+ +A +N+K Q RLE F+
Sbjct: 301 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTA-----QQSRLEGFF 349
>sp|Q178M1|FEN1_AEDAE Flap endonuclease 1 OS=Aedes aegypti GN=Fen1 PE=3 SV=1
Length = 380
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ + E +ELL++ G+PY+ AP EAEAQCA + V T+D D
Sbjct: 125 KFNRRLVKVTKQHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATEDMDALT 184
Query: 939 FGARSVYKNI-FDD-RKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
FG+ + +++ F + RK V+ + I + L LTR++ I + +LLG DY + I GIG
Sbjct: 185 FGSNILLRHLTFSEARKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDSIRGIGPK 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDV--NYAKN 1053
A+E++N + + K E +++ + ++ Q K ++V + +
Sbjct: 245 KAVELIN---KHRTIEKILENLDTKKYVVPENWNYQQARVLFKEPEVANPEEVELKWGEP 301
Query: 1054 SVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKH--TQLRLEAFY 1098
G+ ++ QF+ED+ A KKI K TQ RL++F+
Sbjct: 302 DEEGLVKYLCGDRQFNEDRIRA----GAKKILKTKSTATQGRLDSFF 344
>sp|P70040|FEN1A_XENLA Flap endonuclease 1-A OS=Xenopus laevis GN=fen1-a PE=1 SV=1
Length = 382
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K + V+ + EC++LL + G+PY+ AP EAEA CA + A V T+D D
Sbjct: 125 KFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALT 184
Query: 939 FGARSVYKNIF--DDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
FG + +++ + +K ++ + + + +D+G+T E+ + + +LLGSDY E I GIG
Sbjct: 185 FGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPK 244
Query: 996 NAIEVV 1001
AI+++
Sbjct: 245 RAIDLI 250
>sp|B4MR84|FEN1_DROWI Flap endonuclease 1 OS=Drosophila willistoni GN=Fen1 PE=3 SV=1
Length = 388
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 874 GDEQK--KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVT 931
GDE + K R V+ E E +ELL++ G+PY+ AP EAEAQCA + A V T
Sbjct: 118 GDEAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 932 DDSDVFLFGARSV--YKNIFDDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEG 988
+D D FG+ + Y + RK V+ + + + + L L + + I + +LLG DY E
Sbjct: 178 EDMDALTFGSSKLLRYLTYSEARKMPVKEFTYEKLLQGLELNQREFIDLCILLGCDYCES 237
Query: 989 ISGIGIVNAIEVVNAF 1004
I GIG AIE++N++
Sbjct: 238 IKGIGPKRAIELINSY 253
>sp|Q58839|FEN_METJA Flap endonuclease 1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=fen PE=1 SV=1
Length = 326
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 844 TKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFG 903
T+ + E E ++E ++ D E E K + ++ +M C+ LL + G
Sbjct: 90 TRKVRREMKEKAELKMKEAIKKEDFE------EAAKYAKRVSYLTPKMVENCKYLLSLMG 143
Query: 904 LPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDI 963
+PY+ AP E EAQ +YM V VV+ D D L+GA V +N+ ++ E + ++
Sbjct: 144 IPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMPELIELNEV 203
Query: 964 EKDLGLTREKLIRMALLLGSDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFREWIE 1018
+DL ++ + LI +A+ +G+DY G+ GIG A E+V + +D L K E+ +
Sbjct: 204 LEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYYD 259
>sp|A1CJ75|FEN1_ASPCL Flap endonuclease 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=fen1 PE=3 SV=2
Length = 395
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 874 GDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDD 933
+E +K R V+ E AEC++LL++ G+PYI AP EAEAQCA + A V ++D
Sbjct: 120 AEEIEKFSRRTVRVTREHNAECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 934 SDVFLFGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGIS 990
D F A + +++ F +++ ++ + + + L + R + I M +LLG DY E I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRVLEGLDMDRSQFIDMCILLGCDYLEPIP 239
Query: 991 GIGIVNAIEVVNAFPEEDGLSKFREWIESPDP 1022
+G A++++ E L K E IES DP
Sbjct: 240 KVGPNTALKLIR---EHGSLEKVVEAIES-DP 267
>sp|Q013G9|FEN1_OSTTA Flap endonuclease 1 OS=Ostreococcus tauri GN=FEN1 PE=3 SV=2
Length = 389
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 125/277 (45%), Gaps = 21/277 (7%)
Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
+E +KL + VS E E +L Q+ G+P AP EAEA CA M A LV V T+D
Sbjct: 122 EEVEKLSKRTVRVSKEQSMEVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLVWAVGTEDM 181
Query: 935 DVFLFGARSVYKNIFDDRKYVETYFMQDIEKD---LGLTREKLIRMALLLGSDYTEGISG 991
D F A V +N+ + + D EK LGLT ++ I + +L G DYT+ I G
Sbjct: 182 DTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQFIDLCILCGCDYTDTIRG 241
Query: 992 IGIVNAIEVVNAFPEEDGLSKFREWIES---PDPTILGKFDVQTGASSRKRRSSDGDKDV 1048
+G A++++ E + K E I++ P P D + A +R+ + DV
Sbjct: 242 VGPKTALKLIK---EHGSIEKILEAIDTEKYPPPK-----DWEF-AGARELFKNPEVMDV 292
Query: 1049 NYAKNSVG-----GVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNER 1103
+ S G+ EF QF ED+ ++K +Q RLE+F+ +
Sbjct: 293 SGINLSWKAPDEEGLVEFLVKEKQFQEDRVRG-VCARIRKARQGAASQNRLESFFGPPKI 351
Query: 1104 FAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRK 1140
+ KR + K GS++ L G KS+K
Sbjct: 352 ISSTIGKRKVEETKSGKGSKAGLNKKSKGVSGYKSKK 388
>sp|C8BKD0|FEN1_SHEEP Flap endonuclease 1 OS=Ovis aries GN=FEN1 PE=2 SV=1
Length = 380
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 75/130 (57%), Gaps = 3/130 (2%)
Query: 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSD 935
E +K + V+ + EC+ LL + G+PY+ AP EAEA CA + A V T+D D
Sbjct: 122 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMD 181
Query: 936 VFLFGARSVYKNIF--DDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGI 992
FG+ + +++ + +K ++ + + I ++LGL +E+ + + +LLGSDY E I GI
Sbjct: 182 CLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGI 241
Query: 993 GIVNAIEVVN 1002
G A++++
Sbjct: 242 GPKRAVDLIQ 251
>sp|B5DUR8|FEN1_DROPS Flap endonuclease 1 OS=Drosophila pseudoobscura pseudoobscura GN=Fen1
PE=3 SV=1
Length = 386
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 26/236 (11%)
Query: 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSD 935
E +K R V+ E E +ELL + G+PY+ AP EAEAQCA + A V T+D D
Sbjct: 122 EIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMD 181
Query: 936 VFLFGARSV--YKNIFDDRKY-VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGI 992
FG+ + Y + RK V+ + + + L + + I + +LLG DY E I GI
Sbjct: 182 ALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIKGI 241
Query: 993 GIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRS-------SDGD 1045
G AIE++N + + + + +++ D + K+ V + + R +D
Sbjct: 242 GPKRAIELINNYRDIETI------LDNLDTS---KYTVPENWNYKVARELFIEPEVADAS 292
Query: 1046 K-DVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKH--TQLRLEAFY 1098
D+ + + G+ +F QF E++ KK+F KH TQ+RL++F+
Sbjct: 293 AIDLKWTEPDEEGLVKFLCGDRQFSEER----VRNGAKKLFKSKHAQTQVRLDSFF 344
>sp|A4VDN2|FEN1_TETTS Flap endonuclease 1 OS=Tetrahymena thermophila (strain SB210) GN=FEN1
PE=3 SV=1
Length = 384
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Query: 874 GDEQKKL---ERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVV 930
GD Q+ L +RN ++ EM A+ +LLQ+ G+P I+AP EAEAQCA + A V V
Sbjct: 122 GDMQEALKQEQRNLH-ITKEMKADAIKLLQLVGVPVILAPCEAEAQCAALAKAKKVFATV 180
Query: 931 TDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGIS 990
T+D D F + +N+ ++ + + + ++L L+ + + + +L G DY I
Sbjct: 181 TEDMDALTFATPFLLRNLNSKKEPITEINYEKMLQELKLSHNEFVDLCILCGCDYLGRIE 240
Query: 991 GIGIVNAIEVVNAFPEEDGLSKFREWIE 1018
G+G VNA +++ E L K E +E
Sbjct: 241 GVGPVNAFKLIT---EHKSLEKVLEHME 265
>sp|Q97B98|FEN_THEVO Flap endonuclease 1 OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=fen PE=3 SV=1
Length = 335
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 25/215 (11%)
Query: 803 PLVKTSGNASIYDTDIEQKSA---EERTPDTYLKDSKQNTGIFATKAIENVHAEATEKIL 859
PL+ +SGN + + I ++ E ++ D K + T I + E + L
Sbjct: 46 PLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAEL 105
Query: 860 EEEMQILDHEYMYLGDEQ-KKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCA 918
EE + G+E K+ ++ ++ + +ELL G+PY+ AP E EAQ +
Sbjct: 106 EEAIS--------RGEENLKQYYSRINYITPQIVNDTKELLTYMGIPYVDAPSEGEAQAS 157
Query: 919 YMELANLVDGVVTDDSDVFLFGARSVYKN--IFDDRK----------YVETYFMQDIEKD 966
YM + DGV++ D D LFGA+ + +N I+ RK Y E + ++ K
Sbjct: 158 YMTRKD-ADGVISQDYDCLLFGAKKILRNFAIYGRRKVPRKNVYRTVYPEYVMLDEVLKK 216
Query: 967 LGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVV 1001
G+ +++LI + +L+G+D+ EGI GIG A+ ++
Sbjct: 217 NGINQDQLIEIGILVGTDFNEGIKGIGAKKALALI 251
>sp|Q5B9L6|FEN1_EMENI Flap endonuclease 1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=fen1 PE=3 SV=1
Length = 395
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 23/234 (9%)
Query: 879 KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938
K R V+ E AEC++LL++ G+PYI AP EAEAQCA + A V ++D D
Sbjct: 125 KFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLC 184
Query: 939 FGARSVYKNI-FDDRKY--VETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIV 995
F A + +++ F +++ ++ + + LG+ R + I + +LLG DY E I +G
Sbjct: 185 FEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPN 244
Query: 996 NAIEVVNAFPEEDGLSKFREWIESPDP----TILGKFDVQTG----ASSRKRRSSDGDKD 1047
A++++ + L K E IE DP I + Q + R ++D + D
Sbjct: 245 TALKLIR---DHGTLEKVVESIEK-DPKQKYVIPESWPYQDARELFLNPDVRDANDPECD 300
Query: 1048 VNYAKNSVGGVSEFDESISQFDEDKQ---SAEYSQNMKKIFMDKHTQLRLEAFY 1098
+ + G+ +F F+ED+ +A +N+K Q RLE F+
Sbjct: 301 FKWEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTA-----QQSRLEGFF 349
>sp|A6UX46|FEN_META3 Flap endonuclease 1 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=fen PE=3 SV=1
Length = 326
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 895 CQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKY 954
C++LL++ G+PYI AP E EAQCA+M VV+ D D L+GA +NI K
Sbjct: 135 CKKLLKLMGIPYIDAPSEGEAQCAHMIKNGDAYCVVSQDYDALLYGAPRTVRNITASNKP 194
Query: 955 VETYFMQDIEKDLGLTREKLIRMALLLGSDY-TEGISGIGIVNAIEVV 1001
+E ++DI K L ++ + LI MA+L+G+DY GI GIG A+ ++
Sbjct: 195 LELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTII 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,313,563
Number of Sequences: 539616
Number of extensions: 24685777
Number of successful extensions: 81307
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 441
Number of HSP's that attempted gapping in prelim test: 78968
Number of HSP's gapped (non-prelim): 2381
length of query: 1484
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1353
effective length of database: 120,879,763
effective search space: 163550319339
effective search space used: 163550319339
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 68 (30.8 bits)