Query 000457
Match_columns 1484
No_of_seqs 233 out of 1277
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 17:56:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000457.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_234-238//hhsearch_pdb/000457hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ory_A Flap endonuclease 1; hy 1.0 1 1 326.0 20.0 225 868-1100 120-361 (363)
2 1ul1_X Flap endonuclease-1; pr 1.0 1 1 307.6 13.6 221 876-1101 121-346 (379)
3 1b43_A Protein (FEN-1); nuclea 1.0 1 1 307.4 19.4 211 876-1099 116-339 (340)
4 2izo_A FEN1, flap structure-sp 1.0 1 1 304.7 14.9 217 876-1098 113-346 (346)
5 3q8k_A Flap endonuclease 1; he 1.0 1 1 300.6 21.5 232 860-1099 103-341 (341)
6 1a76_A Flap endonuclease-1 pro 1.0 1 1 300.4 17.9 209 876-1099 116-326 (326)
7 1rxw_A Flap structure-specific 1.0 1 1 293.5 18.0 215 869-1098 107-336 (336)
8 3qe9_Y Exonuclease 1; exonucle 1.0 1 1 261.0 17.3 147 861-1008 97-251 (352)
9 1bgx_T TAQ DNA polymerase; DNA 1.0 1 1 217.6 -1.1 116 890-1009 94-216 (832)
10 1exn_A 5'-exonuclease, 5'-nucl 1.0 1 1 196.0 12.8 125 888-1019 100-235 (290)
No 1
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=1.00 E-value=1 Score=326.03 Aligned_cols=225 Identities=23% Similarity=0.367 Sum_probs=181.8
Q ss_pred HHHHHHCH--HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEECCCCCEEE
Q ss_conf 99983090--4999976067799998999999999909972617640889989998719566998089721213577799
Q 000457 868 HEYMYLGD--EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVY 945 (1484)
Q Consensus 868 qE~v~lG~--EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLLFGakkVI 945 (1484)
.++...|. ++.+++++++.||++|+..++++|++|||||++||||||||||+|++.|++++|+|+|+|+|+||+++|+
T Consensus 120 ~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~ 199 (363)
T 3ory_A 120 EEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLV 199 (363)
T ss_dssp HHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEE
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 99998278999999874025688999999999999879989996860899999999779968998899583324788489
Q ss_pred EECCCCCC--------E----EEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 97248997--------0----999937888999299999999999980998989-9987529999999996699047999
Q 000457 946 KNIFDDRK--------Y----VETYFMQDIEKDLGLTREKLIRMALLLGSDYTE-GISGIGIVNAIEVVNAFPEEDGLSK 1012 (1484)
Q Consensus 946 RNLf~~~k--------~----VEvydledIleeLGLTreQFIDLAILsGcDYlp-GIPGIGPKTAlKLIkqFgSlDgLek 1012 (1484)
++++..+. + +++|+.+.+.+.+|++++||+|+|+|+||||+| ||||||+|||++||++|++++ .
T Consensus 200 ~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle---~ 276 (363)
T 3ory_A 200 RNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIE---K 276 (363)
T ss_dssp ESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSST---T
T ss_pred EEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHH---H
T ss_conf 9866256645776555454551897299999985969999999999808988888999837999999999819999---9
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCC
Q ss_conf 998630899975673345678754333468998876667877222223344435447110217889999999510--012
Q 000457 1013 FREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMD--KHT 1090 (1484)
Q Consensus 1013 FrEW~e~P~~~ll~eld~ns~~~fKKK~kav~~~eipw~fPdleVL~~Fl~pvVs~seD~~s~~~ierLrk~f~~--k~t 1090 (1484)
+.++........ ........|+...... ..+++|..||++.|+.|+....+|+++ ++...+++|.+.... +.+
T Consensus 277 il~~~~~~~~~~--~~~~~~~~f~~p~v~~--~~~~~w~~pd~~~l~~fl~~~~~f~~~-rv~~~~~~l~~~~~~~~~~~ 351 (363)
T 3ory_A 277 IPKPILKSPIEV--DVIAIKKYFLQPQVTD--NYRIEWHTPDPDAVKRILVDEHDFSID-RVSTALERYVKAFKENIRGE 351 (363)
T ss_dssp SCGGGCCCSSCC--CHHHHHHHHHSCCCCS--CCCCCCCCCCHHHHHHHHTTTTCCCHH-HHHHHHHHHHHHHHHHTC--
T ss_pred HHHHCCCCCCCC--CHHHHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHCCCCCCC
T ss_conf 998510046899--9999999851999888--777788998999999999863398999-99999999999861656676
Q ss_pred CCCCCCCCCH
Q ss_conf 2321012441
Q 000457 1091 QLRLEAFYTF 1100 (1484)
Q Consensus 1091 QlRIdsFFt~ 1100 (1484)
|.||++||+.
T Consensus 352 q~~l~~~f~~ 361 (363)
T 3ory_A 352 QKGLSKWFSK 361 (363)
T ss_dssp ----------
T ss_pred CCCHHHHCCC
T ss_conf 7888884689
No 2
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=1.00 E-value=1 Score=307.61 Aligned_cols=221 Identities=24% Similarity=0.421 Sum_probs=181.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEECCCCCEEEEECCCC---C
Q ss_conf 4999976067799998999999999909972617640889989998719566998089721213577799972489---9
Q 000457 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDD---R 952 (1484)
Q Consensus 876 EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLLFGakkVIRNLf~~---~ 952 (1484)
+..+|+++++.||+.|+..++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|+||+++|++++... .
T Consensus 121 ~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k 200 (379)
T 1ul1_X 121 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKK 200 (379)
T ss_dssp --------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 89999863247999999999999998599820488739999999996598679982685701015664999705565676
Q ss_pred CEEEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf 7099993788899929999999999998099898999875299999999966990479999986308999756733456-
Q 000457 953 KYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQ- 1031 (1484)
Q Consensus 953 k~VEvydledIleeLGLTreQFIDLAILsGcDYlpGIPGIGPKTAlKLIkqFgSlDgLekFrEW~e~P~~~ll~eld~n- 1031 (1484)
..+++|+.+.+.+.+||+++||+++|+|+||||++||||||+|||++||++|++ ++.+.+|+......+...+...
T Consensus 201 ~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gs---le~i~~~~~~~k~~~~~~~~~~~ 277 (379)
T 1ul1_X 201 LPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKS---IEEIVRRLDPNKYPVPENWLHKE 277 (379)
T ss_dssp CCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSS---HHHHHTTCCCTTSCCCSSCCHHH
T ss_pred CCEEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC---HHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 771998099999881999999999999809976789998579999999998599---99999999862356887688999
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 7-875433346899887666787722222334443544711021788999999951001223210124414
Q 000457 1032 T-GASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFN 1101 (1484)
Q Consensus 1032 s-~~~fKKK~kav~~~eipw~fPdleVL~~Fl~pvVs~seD~~s~~~ierLrk~f~~k~tQlRIdsFFt~~ 1101 (1484)
. ..+...........++.|..||.+.|..|+.....|+++ ++...+++|.+.+ ...+|.||++||+..
T Consensus 278 ar~l~l~~~v~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~-rv~~~~~rl~~~~-~~~~q~~l~~ff~~~ 346 (379)
T 1ul1_X 278 AHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFSEE-RIRSGVKRLSKSR-QGSTQGRLDDFFKVT 346 (379)
T ss_dssp HHHHHHSCCCCCGGGCCCCCCCCCHHHHHHHTTTTSCCCHH-HHHHHHHHHHHHH-SCCSBCCHHHHSEEE
T ss_pred HHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHH-CCCCCCCHHHHCCCC
T ss_conf 99984198138887756877998999999999998599889-9999999999765-558877677650778
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=1.00 E-value=1 Score=307.43 Aligned_cols=211 Identities=28% Similarity=0.439 Sum_probs=173.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEECCCCCEEEEECCCCCC--
Q ss_conf 499997606779999899999999990997261764088998999871956699808972121357779997248997--
Q 000457 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRK-- 953 (1484)
Q Consensus 876 EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLLFGakkVIRNLf~~~k-- 953 (1484)
...++.+++..+++.|+..++++|++|||||++||||||||||+|++.|++++|+|+|+|+|+||+++|+++++..+.
T Consensus 116 ~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~ 195 (340)
T 1b43_A 116 EARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRK 195 (340)
T ss_dssp HHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCEEEEEECCCCCCC
T ss_conf 99999975278999999999999998499689757649999999997598789971687844546868999732688756
Q ss_pred ----------EEEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf ----------0999937888999299999999999980998989-99875299999999966990479999986308999
Q 000457 954 ----------YVETYFMQDIEKDLGLTREKLIRMALLLGSDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDP 1022 (1484)
Q Consensus 954 ----------~VEvydledIleeLGLTreQFIDLAILsGcDYlp-GIPGIGPKTAlKLIkqFgSlDgLekFrEW~e~P~~ 1022 (1484)
.+++|+.+.+.+.+|++++||+++|+|+||||+| ||||||+|||++||++|++++.+ .++.+..+.
T Consensus 196 ~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~i---l~~~~~~~~ 272 (340)
T 1b43_A 196 LPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAK---FQKQSDVDL 272 (340)
T ss_dssp CTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGG---TGGGCSSCH
T ss_pred CCCCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHH---HCCCCCCCH
T ss_conf 76532233345068779999988097999999999761899888898876699999999980999999---709877669
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 75673345678754333468998876667877222223344435447110217889999999510012232101244
Q 000457 1023 TILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYT 1099 (1484)
Q Consensus 1023 ~ll~eld~ns~~~fKKK~kav~~~eipw~fPdleVL~~Fl~pvVs~seD~~s~~~ierLrk~f~~k~tQlRIdsFFt 1099 (1484)
. ++. ..|..+.... ..++.|..||.+.|..|+.....|+++ ++...++++.+.+ ++.+|+||++||+
T Consensus 273 ~---~~~----~~~~~~~v~d-~~~~~~~~pd~~~l~~~~~~~~~f~~~-rv~~~~~~~~~~~-~~~~q~~l~~~f~ 339 (340)
T 1b43_A 273 Y---AIK----EFFLNPPVTD-NYNLVWRDPDEEGILKFLCDEHDFSEE-RVKNGLERLKKAI-KSGKQSTLESWFK 339 (340)
T ss_dssp H---HHH----HHHHSCCCCC-CCCCCCCCCCHHHHHHHHTTTTCCCHH-HHHHHHHHHHHHH-HHTTGGGCCSSCC
T ss_pred H---HHH----HHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHH-CCCCCCCHHHHHC
T ss_conf 9---999----9982998888-666878998999999999983498999-9999999998654-6787777877637
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=304.71 Aligned_cols=217 Identities=24% Similarity=0.374 Sum_probs=172.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEECCCCCEEEEECCCCCC--
Q ss_conf 499997606779999899999999990997261764088998999871956699808972121357779997248997--
Q 000457 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRK-- 953 (1484)
Q Consensus 876 EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLLFGakkVIRNLf~~~k-- 953 (1484)
++.+|++++..+|+.|+..++++|++|||||++||||||||||+|++.|++++|+|+|+|+|+||+++|+++++..++
T Consensus 113 ~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~ 192 (346)
T 2izo_A 113 ELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRK 192 (346)
T ss_dssp ------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCCEEEEEECCCCCCC
T ss_conf 99999863167999999999999998799889748759999999996798589977887706325775999724555656
Q ss_pred ----------EEEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf ----------0999937888999299999999999980998989-99875299999999966990479999986308999
Q 000457 954 ----------YVETYFMQDIEKDLGLTREKLIRMALLLGSDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDP 1022 (1484)
Q Consensus 954 ----------~VEvydledIleeLGLTreQFIDLAILsGcDYlp-GIPGIGPKTAlKLIkqFgSlDgLekFrEW~e~P~~ 1022 (1484)
.+++|+.+.+.+.+|++++||+++|+|+||||+| ||||||+|||++||++|++++. +.++++..+
T Consensus 193 ~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~---i~~~~~~~k- 268 (346)
T 2izo_A 193 LPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEK---AMEYGEISK- 268 (346)
T ss_dssp ------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC---------------
T ss_pred CCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH---HHHHHHHCC-
T ss_conf 7653334555518877999898729989999999997289889889998379999999998699999---999998625-
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-C--CCCCCCCCCC
Q ss_conf 7567334567875433346-8998876667877222223344435447110217889999999510-0--1223210124
Q 000457 1023 TILGKFDVQTGASSRKRRS-SDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMD-K--HTQLRLEAFY 1098 (1484)
Q Consensus 1023 ~ll~eld~ns~~~fKKK~k-av~~~eipw~fPdleVL~~Fl~pvVs~seD~~s~~~ierLrk~f~~-k--~tQlRIdsFF 1098 (1484)
+...+....-....+... .....++.|..||.+.|..|+.....|+++ ++...+++|.+.+-. + .+|+||++||
T Consensus 269 -~~~~~~~~~l~~i~~~~~v~~~~~~l~~~~~d~~~l~~~~~~~~~f~~~-rv~~~~~~l~~~~~~~~~~~~q~~l~~ff 346 (346)
T 2izo_A 269 -KDINFNIDEIRGLFLNPQVVKPEEALDLNEPNGEDIINILVYEHNFSEE-RVKNGIERLTKAIKEAKGASRQTGLDRWF 346 (346)
T ss_dssp -------CTTHHHHHHSCCCCCCC-CCCCCCCCHHHHHHHTTTTTCCCHH-HHHHHHHHHHHHHHHHHHHHTBCCGGGCC
T ss_pred -CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCCCCCCCCCHHHCC
T ss_conf -8888569999999648988895102856998999999999983498999-99999999999860356777776631039
No 5
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=1.00 E-value=1 Score=300.62 Aligned_cols=232 Identities=22% Similarity=0.380 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHCH--HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 9999996699983090--49999760677999989999999999099726176408899899987195669980897212
Q 000457 860 EEEMQILDHEYMYLGD--EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVF 937 (1484)
Q Consensus 860 eEEaqkL~qE~v~lG~--EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLL 937 (1484)
|+++.....+....+. +..+|.++++.||++|+..++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|
T Consensus 103 R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s~D~D~l 182 (341)
T 3q8k_A 103 RAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCL 182 (341)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSCTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 76758889998732899999999864256879999999999998699789779438999999985698599982885501
Q ss_pred CCCCCEEEEECCCC---CCEEEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 13577799972489---970999937888999299999999999980998989998752999999999669904799999
Q 000457 938 LFGARSVYKNIFDD---RKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFR 1014 (1484)
Q Consensus 938 LFGakkVIRNLf~~---~k~VEvydledIleeLGLTreQFIDLAILsGcDYlpGIPGIGPKTAlKLIkqFgSlDgLekFr 1014 (1484)
+||+++|++++... ...++.|+.+.+.+.+|++++||+|+|+|+||||++||||||||||++||++|++ |+.+.
T Consensus 183 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gs---le~i~ 259 (341)
T 3q8k_A 183 TFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKS---IEEIV 259 (341)
T ss_dssp HTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCS---HHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC---HHHHH
T ss_conf 027867997665455688862997299999882999999999998649977899998468999999998299---99999
Q ss_pred HHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 863089997567334--567875433346899887666787722222334443544711021788999999951001223
Q 000457 1015 EWIESPDPTILGKFD--VQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQL 1092 (1484)
Q Consensus 1015 EW~e~P~~~ll~eld--~ns~~~fKKK~kav~~~eipw~fPdleVL~~Fl~pvVs~seD~~s~~~ierLrk~f~~k~tQl 1092 (1484)
+|+......+...+. .....+++.........++.|..||.+.|+.|+.....|+++ ++...+++|.+.+ .|.
T Consensus 260 ~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~-rv~~~~~~l~~~~----~~~ 334 (341)
T 3q8k_A 260 RRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFSEE-RIRSGVKRLSKSR----QGS 334 (341)
T ss_dssp HHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTTTSCCCCCCCCHHHHHHHHTTTTCCCHH-HHHHHHHHHHHHH----HHH
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHH----CCC
T ss_conf 99986288899653469999986799978986555678998999999999985398999-9999999999874----547
Q ss_pred CCCCCCC
Q ss_conf 2101244
Q 000457 1093 RLEAFYT 1099 (1484)
Q Consensus 1093 RIdsFFt 1099 (1484)
.|++||.
T Consensus 335 ~l~~~~~ 341 (341)
T 3q8k_A 335 TLEVLFQ 341 (341)
T ss_dssp CCCCCCC
T ss_pred CHHHHCC
T ss_conf 5766419
No 6
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=1.00 E-value=1 Score=300.43 Aligned_cols=209 Identities=25% Similarity=0.452 Sum_probs=174.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEECCCCCEEEEECCCCCCEE
Q ss_conf 49999760677999989999999999099726176408899899987195669980897212135777999724899709
Q 000457 876 EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYV 955 (1484)
Q Consensus 876 EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLLFGakkVIRNLf~~~k~V 955 (1484)
++.++.+++..+|+.|+..++++|+.|||||++||||||||||+|++.|++++|+|+|+|+|+||+++|++++...+..+
T Consensus 116 ~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~ 195 (326)
T 1a76_A 116 EAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMP 195 (326)
T ss_dssp TTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCSSCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCCEEEEEECCCCCCE
T ss_conf 99999974378999999999999998499857898409999999997799789955883410224887999503799966
Q ss_pred EEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCC
Q ss_conf 99937888999299999999999980998989-998752999999999669904799999-8630899975673345678
Q 000457 956 ETYFMQDIEKDLGLTREKLIRMALLLGSDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFR-EWIESPDPTILGKFDVQTG 1033 (1484)
Q Consensus 956 EvydledIleeLGLTreQFIDLAILsGcDYlp-GIPGIGPKTAlKLIkqFgSlDgLekFr-EW~e~P~~~ll~eld~ns~ 1033 (1484)
++|+.+.+.+.+|++++||+++|+|+||||+| ||||||+|||++||++ ++ ++.+. +|.+... ++. .
T Consensus 196 ~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gs---le~i~~~~~~~~~-----~~~---~ 263 (326)
T 1a76_A 196 ELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GV---AKDVLKKEVEYYD-----EIK---R 263 (326)
T ss_dssp EEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TC---HHHHHHHHSTTHH-----HHH---H
T ss_pred EEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC-CC---HHHHHHHHHHHHH-----HHH---H
T ss_conf 9988899998849999999999997499999989998579999999973-99---9999999974799-----999---9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 754333468998876667877222223344435447110217889999999510012232101244
Q 000457 1034 ASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYT 1099 (1484)
Q Consensus 1034 ~~fKKK~kav~~~eipw~fPdleVL~~Fl~pvVs~seD~~s~~~ierLrk~f~~k~tQlRIdsFFt 1099 (1484)
.+.-+.... ..++.|..||.+.|..|+.....|+.+ ++...+++|.+.+..+.+|+||++||+
T Consensus 264 ~~l~~~l~~--~~~~~~~~~d~~~l~~~~~~~~~f~~~-rv~~~~~~~~~~~~~~~~q~~l~~~f~ 326 (326)
T 1a76_A 264 IFKEPKVTD--NYSLSLKLPDKEGIIKFLVDENDFNYD-RVKKHVDKLYNLIANKTKQKTLDAWFK 326 (326)
T ss_dssp HHHSCCCCC--CCCCCCCCCCHHHHHHHHTTTTCCCHH-HHHHHHHHHHHHHHHHC----------
T ss_pred HHHCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 983997777--766787998999999999983398999-999999999998706887676664349
No 7
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=1.00 E-value=1 Score=293.45 Aligned_cols=215 Identities=27% Similarity=0.423 Sum_probs=169.6
Q ss_pred HHHHHC-HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEECCCCCEEEEE
Q ss_conf 998309-0499997606779999899999999990997261764088998999871956699808972121357779997
Q 000457 869 EYMYLG-DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKN 947 (1484)
Q Consensus 869 E~v~lG-~EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLLFGakkVIRN 947 (1484)
.....| .+..++.+++..||++|+..++++|++|||||++||||||||||+|++.|++++|+|+|+|+|+||+++|+++
T Consensus 107 ~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~ 186 (336)
T 1rxw_A 107 AALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARN 186 (336)
T ss_dssp HHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEES
T ss_pred HHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCEECCCEEEEE
T ss_conf 99981639999998741568888999999999867998897384399999999976993699737977144327768994
Q ss_pred CCCCCC------------EEEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 248997------------09999378889992999999999999809989899987529999999996699047999998
Q 000457 948 IFDDRK------------YVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFRE 1015 (1484)
Q Consensus 948 Lf~~~k------------~VEvydledIleeLGLTreQFIDLAILsGcDYlpGIPGIGPKTAlKLIkqFgSlDgLekFrE 1015 (1484)
+...+. .++.|+.+.+.+.+|++++||+++|+|+||||+|||||||+|||++||++|+++ +.+.+
T Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsl---e~i~~ 263 (336)
T 1rxw_A 187 LAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDI---FRALK 263 (336)
T ss_dssp CCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSH---HHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCH---HHHHH
T ss_conf 344566667753333445507867999998809799999999864189988899984899999999982999---99997
Q ss_pred HHHC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 6308-99-975673345678754333468998876667877222223344435447110217889999999510012232
Q 000457 1016 WIES-PD-PTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLR 1093 (1484)
Q Consensus 1016 W~e~-P~-~~ll~eld~ns~~~fKKK~kav~~~eipw~fPdleVL~~Fl~pvVs~seD~~s~~~ierLrk~f~~k~tQlR 1093 (1484)
+... .. ...+.++. ...... ...++.|..||.+.|..|+.....|+++ ++.+.+++|.+.. .+|+|
T Consensus 264 ~~~~~l~~~~~l~~i~------~~~~v~--~~~~~~~~~~d~~~l~~~~~~~~~f~~~-rv~~~~~~l~~~~---~~q~~ 331 (336)
T 1rxw_A 264 ALKVNIDHVEEIRNFF------LNPPVT--DDYRIEFREPDFEKAIEFLCEEHDFSRE-RVEKALEKLKALK---STQAT 331 (336)
T ss_dssp HHTC----CHHHHHHH------HSCCCC--CCCCCCCCCCCHHHHHHHHTTTTCCCHH-HHHHHHGGGCC----------
T ss_pred HCCCCCCCHHHHHHHH------HCCCCC--CCCCCCCCCCCHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHH---CCCCC
T ss_conf 5778886299999997------189989--8555667998989999999981298999-9999999998605---56756
Q ss_pred CCCCC
Q ss_conf 10124
Q 000457 1094 LEAFY 1098 (1484)
Q Consensus 1094 IdsFF 1098 (1484)
|++||
T Consensus 332 l~~~f 336 (336)
T 1rxw_A 332 LERWF 336 (336)
T ss_dssp -----
T ss_pred HHHCC
T ss_conf 42029
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=1.00 E-value=1 Score=261.05 Aligned_cols=147 Identities=24% Similarity=0.397 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHCH--HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEEC
Q ss_conf 999996699983090--499997606779999899999999990997261764088998999871956699808972121
Q 000457 861 EEMQILDHEYMYLGD--EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 938 (1484)
Q Consensus 861 EEaqkL~qE~v~lG~--EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLL 938 (1484)
++......+....|. ++.+++++++.||++|+..++++|++|||||++||||||||||+|++.|++++|+|+|+|+|+
T Consensus 97 ~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~ 176 (352)
T 3qe9_Y 97 QANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLA 176 (352)
T ss_dssp HHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 87789999999817989999998621789999999999999980993897782369999999987996899917858212
Q ss_pred CCCCEEEEECCCCCCEEEEEEHHHH--HHHHC--CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC--CCCH
Q ss_conf 3577799972489970999937888--99929--999999999998099898999875299999999966--9904
Q 000457 939 FGARSVYKNIFDDRKYVETYFMQDI--EKDLG--LTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAF--PEED 1008 (1484)
Q Consensus 939 FGakkVIRNLf~~~k~VEvydledI--leeLG--LTreQFIDLAILsGcDYlpGIPGIGPKTAlKLIkqF--gSlD 1008 (1484)
||+++|++++...+..+ .++...+ .+.+| ++++||+|+|+|+||||+|||||||+|||++||++| ++++
T Consensus 177 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~ 251 (352)
T 3qe9_Y 177 FGCKKVILKMDQFGNGL-EIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIV 251 (352)
T ss_dssp GTCSEEEESCCTTSEEE-EEEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHH
T ss_pred CCCCEEEEECCCCCCCE-EEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCHH
T ss_conf 06786999304789828-9759998999996799999999999983387777899972599999999984788899
No 9
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=1.00 E-value=1 Score=217.57 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHCCCCEEECC-CHHHHHHHHHHH----CCCEEEEECCCCCEECCCCCEEEEECCCCCCEEEEEEHHHHH
Q ss_conf 989999999999099726176-408899899987----195669980897212135777999724899709999378889
Q 000457 890 EMFAECQELLQMFGLPYIIAP-MEAEAQCAYMEL----ANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIE 964 (1484)
Q Consensus 890 eMI~eIKeLLKlfGIPYIVAP-YEADAQCAyLaK----kGlVDAVITEDSDLLLFGakkVIRNLf~~~k~VEvydledIl 964 (1484)
.++..++++|+.|||||+++| ||||||||+|++ .|+.++|+|+|+|+++|++++|+++.. . + +.|+.+.+.
T Consensus 94 ~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~-~-g--~~~~~~~v~ 169 (832)
T 1bgx_T 94 RQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP-E-G--YLITPAWLW 169 (832)
T ss_dssp TGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS-S-S--CCBCSTTHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCEEEEEC-C-C--CEECHHHHH
T ss_conf 99999999999879989975784499999999998987698489996798752427698899918-9-9--498399999
Q ss_pred HHHCCCHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 992999999999999809--989899987529999999996699047
Q 000457 965 KDLGLTREKLIRMALLLG--SDYTEGISGIGIVNAIEVVNAFPEEDG 1009 (1484)
Q Consensus 965 eeLGLTreQFIDLAILsG--cDYlpGIPGIGPKTAlKLIkqFgSlDg 1009 (1484)
+.+|++++||+|+|+|+| |||+|||||||+|||++||++|++++.
T Consensus 170 ~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~ 216 (832)
T 1bgx_T 170 EKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEA 216 (832)
T ss_dssp HHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCS
T ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH
T ss_conf 99794999999999863986356899998580489999997799999
No 10
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=1.00 E-value=1 Score=195.99 Aligned_cols=125 Identities=16% Similarity=0.283 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHH--CCCCEEECC-CHHHHHHHHHHHC----CCEEEEECCCCCEECCCCCEE-EEECCCCCCEEEEEE
Q ss_conf 99989999999999--099726176-4088998999871----956699808972121357779-997248997099993
Q 000457 888 SSEMFAECQELLQM--FGLPYIIAP-MEAEAQCAYMELA----NLVDGVVTDDSDVFLFGARSV-YKNIFDDRKYVETYF 959 (1484)
Q Consensus 888 T~eMI~eIKeLLKl--fGIPYIVAP-YEADAQCAyLaKk----GlVDAVITEDSDLLLFGakkV-IRNLf~~~k~VEvyd 959 (1484)
.++|+..++++|++ ||||++.+| |||||+||+|++. |....|+|.|+|+++|++++| +++.. .++.|+
T Consensus 100 ~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~~~----~~~~~~ 175 (290)
T 1exn_A 100 DEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFT----TRREYH 175 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEETT----TTEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCCEEEEECC----CCEEEC
T ss_conf 8856999999997407997189778948999999999999977990999948988403488998999789----878986
Q ss_pred HHHHHHHHCCCH-HHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 788899929999-99999999809--9898999875299999999966990479999986308
Q 000457 960 MQDIEKDLGLTR-EKLIRMALLLG--SDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIES 1019 (1484)
Q Consensus 960 ledIleeLGLTr-eQFIDLAILsG--cDYlpGIPGIGPKTAlKLIkqFgSlDgLekFrEW~e~ 1019 (1484)
.+.+.+.+|++| +||+|+|+|+| |||+|||||||||||++||++|++ |+.+.++...
T Consensus 176 ~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gs---le~i~~~~~~ 235 (290)
T 1exn_A 176 LRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGN---VLDIIDQLPL 235 (290)
T ss_dssp GGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCS---HHHHHHHCSC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC---HHHHHHHHHH
T ss_conf 99999870999799999999943887679999992777679999998499---9999998987
Done!