Your job contains 1 sequence.
>000459
MTVDKRLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWI
YEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSG
DGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA
DGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKK
RVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQF
QQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALID
NPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDG
TKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGK
LLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLL
WFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK
NGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWE
DDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQR
SIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQ
DFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDG
QQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYR
GFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSF
IRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYD
TPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDL
LLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLT
LEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKG
NGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLKKAPAEK
LDDDEEDEVPDLKQRLAKLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQK
KVVTVETSDSEDEIIIDDDEAFEIAAPEEGKKGGRKAAGNSKAAKPAAETKKRGPAKKQQ
PEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLGRAGTIEEPSGSSPSTSEE
VAEVLPPKARPQRANRRQARYVLSDSESEKATDDSEFDEDEDED
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000459
(1484 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 2449 0. 2
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 1921 0. 2
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 1557 0. 3
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 1557 2.0e-307 5
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 1774 7.4e-306 2
UNIPROTKB|P11388 - symbol:TOP2A "DNA topoisomerase 2-alph... 2811 1.6e-303 3
UNIPROTKB|Q64399 - symbol:TOP2B "DNA topoisomerase 2-beta... 2827 1.3e-301 3
UNIPROTKB|Q02880 - symbol:TOP2B "DNA topoisomerase 2-beta... 2816 8.8e-301 3
MGI|MGI:98791 - symbol:Top2b "topoisomerase (DNA) II beta... 2821 6.1e-300 3
UNIPROTKB|F1PRA7 - symbol:TOP2B "DNA topoisomerase 2" spe... 2807 7.8e-300 3
UNIPROTKB|F1MU48 - symbol:TOP2B "DNA topoisomerase 2" spe... 2803 3.4e-299 3
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 1421 1.9e-298 3
UNIPROTKB|F1MDU7 - symbol:TOP2A "DNA topoisomerase 2" spe... 2814 1.3e-297 2
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 2834 2.1e-297 2
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 2832 3.5e-297 2
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 2803 4.4e-297 3
UNIPROTKB|F1RS45 - symbol:TOP2B "DNA topoisomerase 2" spe... 2805 7.3e-297 2
UNIPROTKB|F1NZF0 - symbol:TOP2A "DNA topoisomerase 2" spe... 2795 9.1e-297 3
UNIPROTKB|E1BZ19 - symbol:TOP2B "DNA topoisomerase 2" spe... 2824 2.5e-296 2
UNIPROTKB|O42130 - symbol:TOP2A "DNA topoisomerase 2-alph... 2788 5.0e-296 3
UNIPROTKB|J9PAY8 - symbol:TOP2A "DNA topoisomerase 2" spe... 2817 2.8e-295 2
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 2816 3.6e-295 2
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 2809 2.0e-294 2
UNIPROTKB|O46374 - symbol:TOP2A "DNA topoisomerase 2-alph... 2804 4.1e-294 2
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 2796 6.0e-293 2
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 2793 2.0e-292 2
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 1438 1.0e-291 4
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 1364 3.1e-290 5
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 1364 3.1e-290 5
ZFIN|ZDB-GENE-030131-2453 - symbol:top2a "topoisomerase (... 2714 8.7e-288 3
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 1475 1.7e-284 2
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 2690 2.3e-282 2
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 2712 3.0e-282 1
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 2681 2.0e-281 2
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 1373 1.1e-278 3
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 2620 6.5e-276 2
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 2620 6.5e-276 2
UNIPROTKB|F1P2F2 - symbol:TOP2A "DNA topoisomerase 2" spe... 2547 5.5e-271 3
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 1249 4.2e-251 4
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 1179 2.7e-235 3
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 1179 2.7e-235 3
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 2126 6.8e-226 3
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 2126 6.8e-226 3
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 1656 4.1e-173 2
WB|WBGene00022854 - symbol:cin-4 species:6239 "Caenorhabd... 1216 9.0e-156 2
UNIPROTKB|G5ECQ8 - symbol:cin-4 "Chromosome instability 4... 1216 9.0e-156 2
UNIPROTKB|F1NWD7 - symbol:TOP2B "DNA topoisomerase 2" spe... 639 2.0e-61 1
RGD|1586156 - symbol:Top2b "topoisomerase (DNA) II beta" ... 577 8.6e-55 1
WB|WBGene00021604 - symbol:Y46H3C.4 species:6239 "Caenorh... 364 5.4e-46 3
UNIPROTKB|Q9N4W3 - symbol:Y46H3C.4 "Protein Y46H3C.4" spe... 364 5.4e-46 3
UNIPROTKB|J3KTB7 - symbol:TOP2A "DNA topoisomerase 2-alph... 456 7.5e-42 1
UNIPROTKB|Q4G402 - symbol:TOP2B "DNA topoisomerase II bet... 405 2.1e-36 1
UNIPROTKB|Q23CP4 - symbol:TTHERM_01335310 "DNA topoisomer... 246 1.0e-31 3
UNIPROTKB|Q8EYM0 - symbol:gyrA "DNA gyrase subunit A" spe... 344 9.0e-31 2
UNIPROTKB|P77993 - symbol:gyrB "DNA gyrase subunit B" spe... 206 1.1e-29 3
UNIPROTKB|O67137 - symbol:gyrB "DNA gyrase subunit B" spe... 348 4.2e-28 3
UNIPROTKB|O08399 - symbol:gyrB "DNA gyrase subunit B" spe... 167 1.3e-25 3
TIGR_CMR|BA_3657 - symbol:BA_3657 "DNA topoisomerase IV, ... 178 4.4e-25 4
UNIPROTKB|A6UX65 - symbol:gyrB "DNA gyrase subunit B" spe... 309 2.4e-23 3
TIGR_CMR|CBU_0004 - symbol:CBU_0004 "DNA gyrase, B subuni... 313 3.6e-23 4
UNIPROTKB|Q9KPD9 - symbol:VC_2431 "Topoisomerase IV, subu... 162 8.5e-22 3
TIGR_CMR|VC_2431 - symbol:VC_2431 "topoisomerase IV, subu... 162 8.5e-22 3
UNIPROTKB|Q8A277 - symbol:gyrB "DNA gyrase subunit B" spe... 170 2.3e-21 4
TIGR_CMR|SO_3899 - symbol:SO_3899 "DNA topoisomerase IV, ... 277 3.9e-21 2
TIGR_CMR|CHY_2705 - symbol:CHY_2705 "DNA gyrase, B subuni... 251 6.5e-21 3
UNIPROTKB|Q7NHM9 - symbol:gyrB "DNA gyrase subunit B" spe... 175 7.8e-21 4
TIGR_CMR|CBU_0064 - symbol:CBU_0064 "DNA topoisomerase IV... 254 9.2e-21 2
UNIPROTKB|A6VD80 - symbol:parE "DNA topoisomerase IV, B s... 263 1.2e-20 2
UNIPROTKB|Q3KMH2 - symbol:gyrB_1 "DNA gyrase subunit B" s... 194 4.3e-20 4
UNIPROTKB|P20083 - symbol:parE species:83333 "Escherichia... 241 2.3e-19 2
TIGR_CMR|SPO_1253 - symbol:SPO_1253 "DNA topoisomerase IV... 181 2.3e-19 3
TIGR_CMR|APH_0716 - symbol:APH_0716 "DNA gyrase, B subuni... 166 2.5e-19 3
UNIPROTKB|Q3KL33 - symbol:gyrB_2 "DNA gyrase subunit B" s... 212 3.3e-19 3
UNIPROTKB|P0AES6 - symbol:gyrB species:83333 "Escherichia... 270 8.7e-19 4
UNIPROTKB|Q8A3C1 - symbol:BT_3033 "DNA topoisomerase IV s... 217 9.4e-19 3
TIGR_CMR|SPO_0155 - symbol:SPO_0155 "DNA gyrase, B subuni... 267 1.8e-18 4
UNIPROTKB|Q23CY2 - symbol:TTHERM_00052080 "DNA topoisomer... 261 2.0e-18 2
TIGR_CMR|NSE_0721 - symbol:NSE_0721 "DNA gyrase, B subuni... 266 2.5e-18 3
UNIPROTKB|Q89M38 - symbol:gyrB "DNA gyrase subunit B" spe... 158 3.2e-18 3
UNIPROTKB|P05652 - symbol:gyrB "DNA gyrase subunit B" spe... 239 3.4e-18 2
UNIPROTKB|Q9KVX3 - symbol:gyrB "DNA gyrase subunit B" spe... 257 6.7e-18 3
TIGR_CMR|VC_0015 - symbol:VC_0015 "DNA gyrase, subunit B"... 257 6.7e-18 3
TIGR_CMR|CJE_0003 - symbol:CJE_0003 "DNA gyrase, B subuni... 260 1.0e-17 3
TIGR_CMR|SO_0011 - symbol:SO_0011 "DNA gyrase, B subunit"... 249 1.5e-17 2
TIGR_CMR|BA_0005 - symbol:BA_0005 "DNA gyrase, B subunit"... 236 2.7e-17 3
UNIPROTKB|Q9RVW5 - symbol:DR_0906 "DNA gyrase, subunit B"... 157 3.0e-17 3
UNIPROTKB|Q74H89 - symbol:gyrB "DNA gyrase subunit B" spe... 269 3.3e-17 4
TIGR_CMR|GSU_0003 - symbol:GSU_0003 "DNA gyrase, B subuni... 269 3.3e-17 4
UNIPROTKB|Q8TQG0 - symbol:gyrB "DNA gyrase subunit B" spe... 232 9.0e-17 3
TIGR_CMR|ECH_0620 - symbol:ECH_0620 "DNA gyrase, B subuni... 146 1.7e-16 4
UNIPROTKB|O69998 - symbol:O69998 "Putative DNA gyrase sub... 170 3.2e-16 4
TIGR_CMR|DET_0004 - symbol:DET_0004 "DNA gyrase, B subuni... 227 8.2e-16 4
UNIPROTKB|P0C5C5 - symbol:gyrB "DNA gyrase subunit B" spe... 156 9.9e-16 4
TAIR|locus:2146698 - symbol:GYRB2 "DNA GYRASE B2" species... 170 2.5e-15 4
UNIPROTKB|Q89W70 - symbol:gyrB "DNA gyrase subunit B" spe... 237 6.4e-15 3
UNIPROTKB|A8ISW5 - symbol:CHLREDRAFT_115934 "Predicted pr... 215 8.7e-15 1
UNIPROTKB|A9WGP2 - symbol:gyrB "DNA gyrase subunit B" spe... 171 1.8e-14 2
UNIPROTKB|Q3KL34 - symbol:gyrA_2 "DNA gyrase subunit A" s... 213 1.2e-13 1
UNIPROTKB|A8IIG8 - symbol:TOP3 "DNA gyrase subunit B-like... 130 1.8e-13 3
TIGR_CMR|APH_0899 - symbol:APH_0899 "DNA gyrase, A subuni... 211 6.2e-13 1
WARNING: Descriptions of 53 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 2449 (867.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 518/940 (55%), Positives = 627/940 (66%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGK-VLSFYSMPDY 613
M QDHDGSHIKGLLINFIHSFWPSLL++PSFLVEFITPIVKAT K K VLSFYSMP+Y
Sbjct: 536 MTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEY 595
Query: 614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFS 673
E WKESL GNA+ W IKYYKGLGTST++EGKEYF N+ LHKKDFVWED+QDGEAIELAFS
Sbjct: 596 EEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAIELAFS 655
Query: 674 KKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQ 733
KKKIEARK WL + PGNHLDQ++ + YSDFVNKELILFSMADLQRSIPSMVDGLKPGQ
Sbjct: 656 KKKIEARKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQRSIPSMVDGLKPGQ 715
Query: 734 RKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQP 793
RKILF +FK+ KE KVAQ GYVS SAYHHGEQSLAS I+GMAQD+VGSNNINLL P
Sbjct: 716 RKILFVAFKKIARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLP 775
Query: 794 NGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIP 853
NGQFGTR GGKD+ASARYIFT+LSP+TR LFP YLNEDGQ+IEPTWYMPIIP
Sbjct: 776 NGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLLDYLNEDGQRIEPTWYMPIIP 835
Query: 854 TVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKE 913
TVLVNG+EGIGTGWS++IPNYNPR+IVANVRRLLNGE M PM PWYRGF GTIEKTASKE
Sbjct: 836 TVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRGFKGTIEKTASKE 895
Query: 914 AGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDS-FIRGFRQYSDDTT 972
G TYT+TG+ EEV+ETT+RI ELPIRRW DY+ FL+S+ N + F + + Y+D+ +
Sbjct: 896 GGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKS 955
Query: 973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHI 1032
VDF++ LSEE+M+ +QEG LKKFKLTTTI+TSNMHLFD KGVIKKY TPEQILEEFF +
Sbjct: 956 VDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDL 1015
Query: 1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
R E+YEKRK+ RFIL V++GEI+VN RK+ D++ +LRQKGFTPF
Sbjct: 1016 RFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPF 1075
Query: 1093 PKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSI------DYDYLLSMAIGTLTLEKVQG 1146
P+ ++S+EA +AGA D +V+ S +YDYLL+MAI +LT+EKV+
Sbjct: 1076 PRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEE 1135
Query: 1147 LLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEE--ERMKIKGNGNG 1204
LLADRDK+ V D++K TP+SLW+ DL++LD +L++LD DA+ ++ E + K
Sbjct: 1136 LLADRDKMIIAVADMKKTTPKSLWLSDLESLDKELEKLDLKDAQVQQAIEAAQKKIRAKS 1195
Query: 1205 DAGPKIVAKRAPKNA--RKNDKKSNNARATEAM-GEMD---NVTKVVKPKGRAGLXXXXX 1258
A K V ++APK +K KK++ + TEA MD NV +VVKPK R G
Sbjct: 1196 GAAVK-VKRQAPKKPAPKKTTKKASESETTEASYSAMDTDNNVAEVVKPKARQGAKKKAS 1254
Query: 1259 XXXXXXXXXXXXXXXQRLAKLNE---QLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKR 1315
+A++ + + + K P+ + V E E + + + + +
Sbjct: 1255 ESETTEASHSAMDTDNNVAEVVKPKGRQGAKKKAPAAAKE-VEEDEMLDLAQRLAQYNFG 1313
Query: 1316 TAAQKKVVTVETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETKKRGP 1375
+A T ETS + +KRG
Sbjct: 1314 SAPADSSKTAETSKAIAVDDDDDDVVVEVAPVKKGGRKPAATKAAKPPAA----PRKRG- 1368
Query: 1376 AKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLGRAXXXXXXXXXXX 1435
+Q AS TE+L S PEKKVRKMR+SPFNKKS S++ R
Sbjct: 1369 ---KQTVAS------TEVLAIGVS-PEKKVRKMRSSPFNKKSSSVMSRLADNKEEESSEN 1418
Query: 1436 XXXXXVAEV----LXXXXXXXXXXXXXXXYVLSDSESEKA 1471
+E + YVLSDSESE A
Sbjct: 1419 VAGNSSSEKSGGDVSAISRPQRANRRKMTYVLSDSESESA 1458
Score = 1963 (696.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 395/540 (73%), Positives = 439/540 (81%)
Query: 6 RLPLTTSNNANVV-GPT-----APNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALW 59
+LPL SN ANV P A KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQ LW
Sbjct: 4 KLPLQNSNAANVAKAPAKSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLW 63
Query: 60 IYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNS 119
+YE++ M+ R ++YVPGLYKIFDEILVNAADNKQRD KMD+V+VVID E +LISV NS
Sbjct: 64 VYEKDE--MVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNS 121
Query: 120 GDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET 179
G GVPVEIHQEEG+YVPE+IFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET
Sbjct: 122 GAGVPVEIHQEEGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET 181
Query: 180 ADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMK 239
ADGKRLKKYKQVF NNMGKKSEP I+KC + +NWTKV+FKPDL KFNMT LEDDVVALM
Sbjct: 182 ADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELEDDVVALMS 241
Query: 240 KRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMY----PKSVT-----RFHERVNERWE 290
KRV D+AGCLGKSVKVELNG ++PVKSF +YVD+Y KS T R E+VN+RWE
Sbjct: 242 KRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRLTEKVNDRWE 301
Query: 291 ICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX 350
+CV+LSEGQFQQVSFVN IATIKGGTHVDYV +Q
Sbjct: 302 VCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVNKKNKNANVKAHNVKNH 361
Query: 351 LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK 410
LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSE+FLKKV KSG+VE LLSWA+FK
Sbjct: 362 LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKV-GKSGVVENLLSWADFK 420
Query: 411 QSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRD 470
Q+KDLKK+DG KT V + KL+DA AGG+NS CTLILTEGDSAK+LA+AG SV+G +
Sbjct: 421 QNKDLKKSDGAKTGRVL-VEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNN 479
Query: 471 RFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQ 530
GVFPLRGKLLNVREAS+ Q+ NN EI N+KKILGLKQ ++Y NV SLRYG +MIMTDQ
Sbjct: 480 YCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQ 539
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 1921 (681.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 373/535 (69%), Positives = 435/535 (81%)
Query: 6 RLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEES 65
RLPL +S+ N KTIEEMYQKK+QLEHILLRPDTYIGS+EKHT LW+YE+ +
Sbjct: 7 RLPLQSSSGHNAAAGGGGGKTIEEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVYEDGA 66
Query: 66 KTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPV 125
M+ R+++YVPGLYKIFDEILVNAADNKQRDP MD+++V ID + ISV+N+GDG+PV
Sbjct: 67 --MVSRSVTYVPGLYKIFDEILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPV 124
Query: 126 EIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRL 185
EIHQEEGVYVPE+IFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEF+IETADG+R
Sbjct: 125 EIHQEEGVYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQ 184
Query: 186 KKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDL 245
KKYKQVF+ NMGKKSEP I+KCK+G+NWT+V+FKPDLAKFNMTHLE+DVVALM+KRVVD+
Sbjct: 185 KKYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDM 244
Query: 246 AGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTR----------FHERVNERWEICVTL 295
AG LGK+VKVEL+ +VPV SF++YV +Y KS ++ ++VN+RWE+CV+L
Sbjct: 245 AGTLGKTVKVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSL 304
Query: 296 SEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFV 355
SEGQFQQVSFVN IATIKGGTHVDYV NQ LWVFV
Sbjct: 305 SEGQFQQVSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKNAHMKAHNVKSHLWVFV 364
Query: 356 NALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL 415
NALIDNPAFDSQTKETLT RQ+SFGSKCELS++FLKKV S IV LLSWA FK SK+L
Sbjct: 365 NALIDNPAFDSQTKETLTTRQASFGSKCELSDDFLKKV-GSSAIVLNLLSWAEFKLSKEL 423
Query: 416 KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVF 475
+K DG+K + GI KLEDAN AGG++S CTLILTEGDSAKALAMAG+SVVGRD +GVF
Sbjct: 424 QKTDGSKRSRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVF 483
Query: 476 PLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQ 530
PLRGKLLNVREAS Q++ N+EI NIK+ILGL+ G +Y++ K LRYGHLMIMTDQ
Sbjct: 484 PLRGKLLNVREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQ 538
Score = 1705 (605.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 320/401 (79%), Positives = 351/401 (87%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGK--VLSFYSMPD 612
M QDHDGSHIKGLLINFIHSFWPSL+KIPSFLVEFITPI+KATNK K VL FYSMP+
Sbjct: 535 MTDQDHDGSHIKGLLINFIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPE 594
Query: 613 YEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAF 672
YE WKESLGGNAS WSIKYYKGLGTSTS EG++YFQ+I HKKDFVW++DQD IELAF
Sbjct: 595 YEQWKESLGGNASGWSIKYYKGLGTSTSSEGRQYFQDIAKHKKDFVWKNDQDDNDIELAF 654
Query: 673 SKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPG 732
SKK+I RK+WL F+ G HLD + KYIKYSDF+NKELI FSMADL RSIPSMVDGLKPG
Sbjct: 655 SKKRITDRKEWLTNFQSGTHLDTEGKYIKYSDFINKELIQFSMADLLRSIPSMVDGLKPG 714
Query: 733 QRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQ 792
QRKILFCSFKRN +KE KVAQFSGYVSEHSAYHHGEQSLASTI GMAQDFVGSNNINLLQ
Sbjct: 715 QRKILFCSFKRNLVKEIKVAQFSGYVSEHSAYHHGEQSLASTITGMAQDFVGSNNINLLQ 774
Query: 793 PNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPII 852
PNGQFGTR+QGGKDAASARYIFT LSPITR +FP YL+EDGQ IEPTWY+PI+
Sbjct: 775 PNGQFGTRDQGGKDAASARYIFTLLSPITRSIFPKDDDILLNYLDEDGQSIEPTWYVPIL 834
Query: 853 PTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASK 912
P VLVNGSEGIGTGWS++IPNYNPRDIVAN+RRLLN E +EPM PWYRGF G+I+KT +K
Sbjct: 835 PMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTK 894
Query: 913 EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESI 953
GV+YTVTGIIE V++TTLRI ELPIRRW+QDY+EFL SI
Sbjct: 895 AGGVSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFLISI 935
Score = 38 (18.4 bits), Expect = 4.5e-200, Sum P(2) = 4.5e-200
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 548 WITTFCFMLAQDHDGSHIK-GLLIN--FIHSFWPSLLK-IPSFLVEFITP 593
W+T F D +G +IK IN I LL+ IPS +V+ + P
Sbjct: 665 WLTNFQSGTHLDTEGKYIKYSDFINKELIQFSMADLLRSIPS-MVDGLKP 713
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 1557 (553.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 315/693 (45%), Positives = 438/693 (63%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M QDHDGSHIKGL+IN++ S +PSLL+IP FL++FITPI+K T N +V +FY++P+YE
Sbjct: 580 MTDQDHDGSHIKGLIINYLESSYPSLLQIPGFLIQFITPIIKCTRGN-QVQAFYTLPEYE 638
Query: 615 AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK 674
WKE+ N W IKYYKGLGTS + K YF ++ H K F ++D E IE+AF+K
Sbjct: 639 YWKEA-NNNGRGWKIKYYKGLGTSDHDDMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAK 697
Query: 675 KKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQR 734
KK + RK+WL + PG ++D + I DF+N+ELI FSMAD RSIPS+VDGLKPGQR
Sbjct: 698 KKADVRKEWLRTYRPGIYMDYTQPQIPIDDFINRELIQFSMADNIRSIPSVVDGLKPGQR 757
Query: 735 KILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPN 794
K+++ FKRN + E KV++ +GYV+ +AYHHGE S+ TI+ +AQ+FVGSNNINLL PN
Sbjct: 758 KVVYYCFKRNLVHETKVSRLAGYVASETAYHHGEVSMEQTIVNLAQNFVGSNNINLLMPN 817
Query: 795 GQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPT 854
GQFGTR++GGK+A+++RY+ T LSP+ R LF Y N++GQ IEP +Y+PI+P
Sbjct: 818 GQFGTRSEGGKNASASRYLNTALSPLARVLFNSNDDQLLNYQNDEGQWIEPEYYVPILPM 877
Query: 855 VLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEA 914
VLVNG+EGIGTGWS++IPNYNP+DI AN+R +LNGE +E M PWYRGF G+I K A
Sbjct: 878 VLVNGAEGIGTGWSTFIPNYNPKDITANLRHMLNGEPLEIMTPWYRGFRGSITKVAPDR- 936
Query: 915 GVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESII---DQNDSFIRGFRQYSDDT 971
Y ++GII ++ E + I ELPIR WTQD +E+LE+ + ++ FI + + +
Sbjct: 937 ---YKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGEG 993
Query: 972 TVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFH 1031
V F V L+E M E L KFKL+ T +TSNM FD+ G IKKYD+ E IL EF+
Sbjct: 994 NVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYE 1053
Query: 1032 IRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTP 1091
+RL Y++RK+ RFI ++ GE+VV+ +K+ DL++EL++K F P
Sbjct: 1054 VRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQP 1113
Query: 1092 FPKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADR 1151
K K V + V S Y+YLLSM + +LT E+ LL +
Sbjct: 1114 ISKPKKG-HLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKK 1172
Query: 1152 DKLNEEVDDLRKATPESLWVKDLDAL---------DMQLDELDKSDARAE---EERMKIK 1199
D++ E+D L K TP+ LW+ DLDA D+Q + L++ + + + K +
Sbjct: 1173 DEVMAELDALIKKTPKELWLHDLDAFEHAWNKVMDDIQREMLEEEQSSRDFVNRTKKKPR 1232
Query: 1200 GNGNGDAGPKIVAKRAPKNARKNDKKSNNARAT 1232
G G P+ +A + A K + S + +T
Sbjct: 1233 GKSTGTRKPRAIAGSSSSTAVKKEASSESKPST 1265
Score = 1496 (531.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 290/538 (53%), Positives = 386/538 (71%)
Query: 1 MTVDKRLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWI 60
MT +++PL T NN N G N + YQ+ + EH+L RPDTYIGSIE T +W+
Sbjct: 55 MTASEQIPLVT-NNGN--G----NSNVSTQYQRLTPREHVLRRPDTYIGSIEPTTSEMWV 107
Query: 61 YEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSG 120
++ E + ++ ++YVPGLYKIFDEI+VNAADNK RDP M+ +KV +D E ++IS++N+G
Sbjct: 108 FDSEKNKLDYKAVTYVPGLYKIFDEIIVNAADNKVRDPNMNTLKVTLDPEANVISIYNNG 167
Query: 121 DGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA 180
G+P+EIH +E +Y+PELIFG+LLTSSNYDDN KK TGGRNGYGAKL NIFSTEF++ETA
Sbjct: 168 KGIPIEIHDKEKIYIPELIFGNLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTEFVVETA 227
Query: 181 DGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKK 240
D +R+KKYKQ + +NM +KSEP I+ K+ D +TK++FKPDLAKF M ++DD+V+++K+
Sbjct: 228 DKERMKKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKIDDDMVSIIKR 287
Query: 241 RVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTR--------FHERVNERWEIC 292
R+ D+AG + + KV LN R+ + F +YV+MY S T+ +E VN+RW++
Sbjct: 288 RIYDMAGTV-RETKVYLNNERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVA 346
Query: 293 VTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLW 352
+S+GQF+QVSFVN I+TI+GGTHV+YVAN+ +
Sbjct: 347 FAVSDGQFKQVSFVNNISTIRGGTHVNYVANKIVDAIDEVVKKENKKAPVKAFQIKNYVQ 406
Query: 353 VFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQS 412
VFVN I+NP+FDSQTKETLT + S+FGS+C LS++FLK + KS +VE +L +A K
Sbjct: 407 VFVNCQIENPSFDSQTKETLTTKVSAFGSQCTLSDKFLKAIK-KSSVVEEVLKFATAKAD 465
Query: 413 KDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRF 472
+ L K DG + G++KLEDAN AG + S +C LILTEGDSAK+LA++GLSVVGRD +
Sbjct: 466 QQLSKGDGGLRSRITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYY 525
Query: 473 GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQ 530
GVFPLRGKLLNVREAS +Q+LNN EI IKKI+G Y +VK LRYGHLMIMTDQ
Sbjct: 526 GVFPLRGKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQ 583
Score = 49 (22.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 1184 LDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMD 1239
LD SD+ + R + + + DAG K K+ +A +K+N AT D
Sbjct: 1313 LDSSDSG--KSRKRSQSVDSEDAGSKKPVKKIAASASGRGRKTNKPVATTIFSSDD 1366
Score = 37 (18.1 bits), Expect = 5.2e-165, Sum P(3) = 5.2e-165
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 587 LVEFITPIVKATNKNGKVLSF 607
+V+ I +VK NK V +F
Sbjct: 379 IVDAIDEVVKKENKKAPVKAF 399
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 1557 (553.2 bits), Expect = 2.0e-307, Sum P(5) = 2.0e-307
Identities = 319/694 (45%), Positives = 444/694 (63%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M QD+DGSHIKGLLIN IH FWPSLLK FL EF+TPIVK K + LSF+++ +YE
Sbjct: 581 MTDQDYDGSHIKGLLINMIHKFWPSLLKHKGFLCEFVTPIVKV-QKGNQELSFFTIAEYE 639
Query: 615 AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK 674
WKE+ N W IKYYKGLGTST KE K+YF +I HK F+W D+DG++I++AFSK
Sbjct: 640 QWKENT--NLVGWKIKYYKGLGTSTDKEFKQYFSDIQSHKIFFLWTGDRDGDSIDMAFSK 697
Query: 675 KKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQR 734
K+IE RK WL F G+++D KEK + Y DFVNKELI +S D +RSIP+++DG KPGQR
Sbjct: 698 KRIEDRKLWLQNFILGSYVDHKEKDLSYYDFVNKELIYYSRYDTERSIPNIMDGWKPGQR 757
Query: 735 KILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPN 794
K+L+ FKRN E KVAQ GY++EHSAYHHGE SL TI+ MAQ FVGSNNIN L+P
Sbjct: 758 KVLYGCFKRNLKNECKVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPC 817
Query: 795 GQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPT 854
GQFG+R +GGKDA++ARYIFT+L+ TR +F YLNE+GQ+IEP +Y+P+IPT
Sbjct: 818 GQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKYLNEEGQKIEPQYYIPVIPT 877
Query: 855 VLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEA 914
+LVNG EGIGTG+SS+IPNYN +DI+ N+++ ++ E + PM PWY+ F G IE ++
Sbjct: 878 ILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEPLVPMVPWYKDFKGRIEPNG--KS 935
Query: 915 GVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESII-DQNDSFIRGFRQYSDDTTV 973
G Y GII ++++ TL I ELPI+RWTQDY+EFLE ++ D+ + I + S V
Sbjct: 936 G--YETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNSSHEDV 993
Query: 974 DFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEF-FHI 1032
F + + + R ++EGL K FKL +T++T+NM LFD K +++Y + IL++F FH
Sbjct: 994 CFTIKMDPIKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPKLKLQRYASELDILKDFCFH- 1052
Query: 1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
RL Y RK +FIL ++NGE+VVN +K+ L+ EL +KG+ P+
Sbjct: 1053 RLNAYTDRKNYLISKLEKEKRIISNKTKFILAIINGELVVNKKKKKILVEELYRKGYDPY 1112
Query: 1093 PK--NSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLAD 1150
K E D ++ GV DY+YLL+M I +LTLEKV+ LL+
Sbjct: 1113 KDIHKLKKEEIFEQELLDAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLEKVEELLSQ 1172
Query: 1151 RDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKI 1210
+ +E++ L+ T E++W+KD++ ++ ++ + EE K K G
Sbjct: 1173 LKEKEQELEILKSITVETMWLKDIEKVEEAIEFQRNVELANREESNKFKV-ARKKIGAGF 1231
Query: 1211 VAKRAPKNARKNDK-KSNNARATEAMGEMDNVTK 1243
K+ K +D+ + + + ++E M N+ K
Sbjct: 1232 KKKKKKKKLTSDDESEGDTSDSSEFMINSLNIKK 1265
Score = 761 (272.9 bits), Expect = 2.0e-307, Sum P(5) = 2.0e-307
Identities = 147/256 (57%), Positives = 188/256 (73%)
Query: 24 NKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIF 83
NKTIEE YQKKSQ+EHILLRPDTYIGS+E HTQ LWI+ +E M+ + I+YVPGLYKIF
Sbjct: 4 NKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKEKSRMVQKNITYVPGLYKIF 63
Query: 84 DEILVNAADNKQRDPK-----MDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPEL 138
DEI+VNAAD K R+ + M +K+ I++E ISV+N G+G+PV+IH+E +YVP +
Sbjct: 64 DEIIVNAADVKAREKEKSENPMTCIKIEINREQKKISVYNDGEGIPVDIHKEMNIYVPHM 123
Query: 139 IFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGK 198
IFG LLTS NYDD + TGGRNG+GAKLTNIFS EF ++ D R K++K + NM K
Sbjct: 124 IFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFTVQCGDSSRKKEFKMTWFQNMSK 183
Query: 199 KSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELN 258
S+P+I K G ++ KV+FKPDL KF M+ L+DD+ L+ KRV DLAG +V+V LN
Sbjct: 184 FSDPHI-KNYNGKDYVKVTFKPDLDKFGMSELDDDIECLLHKRVYDLAGTC--NVRVYLN 240
Query: 259 GHRVPVKSFAEYVDMY 274
G R+PVK F YVD+Y
Sbjct: 241 GTRLPVKDFKSYVDLY 256
Score = 623 (224.4 bits), Expect = 2.0e-307, Sum P(5) = 2.0e-307
Identities = 134/264 (50%), Positives = 170/264 (64%)
Query: 274 YPKSVTRFHERVNERWEICVTLSEG-QFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXX 332
Y + + + HE+ RWEI ++ ++G QFQQVSFVN I T KGGTHV Y+ +Q
Sbjct: 323 YEEEIVKIHEK-QHRWEIVISKTDGSQFQQVSFVNSICTTKGGTHVSYIVDQLLNSLSKK 381
Query: 333 XXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLK 391
LWVFVN LI NP FDSQTKETLT +Q+ FGSKC L+++ +
Sbjct: 382 ANAKNKGGMEIKAGHIRNHLWVFVNCLIVNPTFDSQTKETLTTKQAKFGSKCTLTDKTIN 441
Query: 392 KVTAKSGIVETLLSWANFKQSKDLKKN---DGTKT-EDVRGISKLEDANLAGGRNSEQCT 447
V KS I+ +L WA K +L+K +K E + GI KLEDAN AG + S++CT
Sbjct: 442 NVL-KSSILSNILLWAQAKAQVELRKKMKAGSSKARERIIGIPKLEDANDAGSKYSQECT 500
Query: 448 LILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGL 507
LILTEGDSAK +AGLS+VGRDR+GVFPL+GKLLNVR+AS Q+++N EI NI KI+GL
Sbjct: 501 LILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGKLLNVRDASFKQLMDNKEIQNIFKIMGL 560
Query: 508 K-QGVEYNNVKSLRYGHLMIMTDQ 530
++K LRYG LMIMTDQ
Sbjct: 561 DITDKNKQDIKGLRYGSLMIMTDQ 584
Score = 43 (20.2 bits), Expect = 4.1e-305, Sum P(4) = 4.1e-305
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 1194 ERMKIKGNGNGDAGPKIVAK--RAPKNARKNDKKSNNARATEAMGEMDNVTKV 1244
E +K+K GD G K A+ PK R ++ ++ G+ D+ V
Sbjct: 1425 ETIKMKNMEKGDNGAKETARSRNTPKRKRSTLLDTSKSKDDFDFGDDDSSKNV 1477
Score = 39 (18.8 bits), Expect = 2.0e-307, Sum P(5) = 2.0e-307
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 1217 KNARKNDKKSNNARATEAMGEMDN 1240
KN++K K NN + + ++D+
Sbjct: 1265 KNSKKTPNKKNNNSVRKKIRKIDS 1288
Score = 38 (18.4 bits), Expect = 2.9e-231, Sum P(5) = 2.9e-231
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 TVDKRLPLTTSN-NANVVGPTAPNKTIEE 29
T+D L ++ S+ N G P KT EE
Sbjct: 285 TIDN-LDVSISHENGGGAGDITPTKTTEE 312
Score = 38 (18.4 bits), Expect = 5.2e-69, Sum P(4) = 5.2e-69
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 618 ESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWE 660
E+ GG K + G S K + + +H+K WE
Sbjct: 296 ENGGGAGDITPTKTTEENGNSNFNNNKYEEEIVKIHEKQHRWE 338
Score = 37 (18.1 bits), Expect = 2.0e-307, Sum P(5) = 2.0e-307
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1301 EKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
EK AK+ S+ T +K+ ++TS S
Sbjct: 1433 EKGDNGAKETARSRNTPKRKRSTLLDTSKS 1462
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 1774 (629.5 bits), Expect = 7.4e-306, Sum P(2) = 7.4e-306
Identities = 345/635 (54%), Positives = 434/635 (68%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATN-KNGKVLSFYSMPDY 613
M QDHDGSHIKGL++NF+HSF+PSLL+IP FL+EFITPIVKA ++ KV FY+MP+Y
Sbjct: 535 MTDQDHDGSHIKGLIMNFLHSFFPSLLRIPGFLLEFITPIVKARRGRDTKV--FYTMPEY 592
Query: 614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFS 673
EAWKESLG ++W IKYYKGLGTST +E +EYF + LH+K+FVWE D+DG++IELAFS
Sbjct: 593 EAWKESLGNATTAWDIKYYKGLGTSTKEEAQEYFSRLDLHRKEFVWEGDEDGDSIELAFS 652
Query: 674 KKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQ 733
KK+++ RK+WL F PG LDQ I YSDF+N+ELILFS ADL RSIPSM+DGLKPGQ
Sbjct: 653 KKRVDDRKEWLSNFVPGTFLDQSADRISYSDFINRELILFSRADLDRSIPSMLDGLKPGQ 712
Query: 734 RKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQP 793
RKIL+ FKRN K+ KVAQ S YV+EHSAYHHGE SLASTI+ +AQDFVGSNN+NLL P
Sbjct: 713 RKILYACFKRNLKKDIKVAQLSAYVAEHSAYHHGEGSLASTIVNLAQDFVGSNNVNLLHP 772
Query: 794 NGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIP 853
+GQFGTR QGGKDAASARYI+TRL+ +TR LF YLNE+GQ IEP WYMPI+P
Sbjct: 773 SGQFGTRLQGGKDAASARYIYTRLAALTRHLFNENDDQLLTYLNEEGQSIEPEWYMPILP 832
Query: 854 TVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKE 913
TVL+NG++GIGTGWS+ IPNYNPRDI+AN+RRLL GE E MHPWYRGF G I + A+ +
Sbjct: 833 TVLINGADGIGTGWSTTIPNYNPRDIMANLRRLLEGEAQEAMHPWYRGFNGNIAEAATHK 892
Query: 914 AGV-TYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDS-------FIRGFR 965
+G +Y V+G + + T+ I ELPIR+WTQDY+EFLE+++ + I +
Sbjct: 893 SGSRSYVVSGTVTQTGPNTIEITELPIRKWTQDYKEFLETLLRPTEKVRRDEAPIIADYS 952
Query: 966 QYSDDTTVDFEVFLSEESM--MRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPE 1023
++ D+ V F V L M + GL KFKLTT I+TSNM LFD G+IK Y +PE
Sbjct: 953 EHHSDSNVHFVVELLPGKMEELLASPGGLDGKFKLTTKIATSNMMLFDHSGMIKHYSSPE 1012
Query: 1024 QILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLE 1083
I+ EF+ +RL++YEKR+ +RFIL VV G + V RKR DL +
Sbjct: 1013 MIVAEFYELRLDYYEKRRIAMLKVASLDQKRADNRIRFILAVVEGRLEVRGRKRADLERD 1072
Query: 1084 LRQKGFTPFPKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTLTLEK 1143
L +GF K ++ + + V YDYLLSM+I LT EK
Sbjct: 1073 LEAQGFDRLGKAGAKVKVRITEVAEDGEEGEGGEAAVTASNGASYDYLLSMSIYNLTREK 1132
Query: 1144 VQGLLADRDKLNEEVDDLRKATPESLWVKDLDALD 1178
+ L + K E V+ L T +W +DLDA +
Sbjct: 1133 IAKLQEEAAKAKERVEYLCSITGRDMWAQDLDAFE 1167
Score = 1185 (422.2 bits), Expect = 7.4e-306, Sum P(2) = 7.4e-306
Identities = 229/378 (60%), Positives = 280/378 (74%)
Query: 157 TGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKV 216
TGGRNGYGAKL NIFSTEFIIET DG RLK+YKQ FT NM K P I+ CK DNWT +
Sbjct: 162 TGGRNGYGAKLANIFSTEFIIETCDGSRLKRYKQTFTKNMQVKGTPKITDCKASDNWTSI 221
Query: 217 SFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMY-- 274
+FKPDLA+F M L++DVV+L+++RV D+AG LGK KV NG R+ +KSF EYVDMY
Sbjct: 222 TFKPDLARFGMEALDEDVVSLLRRRVYDMAGVLGKGAKVYYNGERLSIKSFQEYVDMYLG 281
Query: 275 PKS-VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXX 333
PK+ V RF ER+N+RWE+C+++++G FQQVSFVN I+T KGGTHVDY+ NQ
Sbjct: 282 PKNGVPRFCERINDRWEVCISITDGSFQQVSFVNSISTQKGGTHVDYIVNQVVKHATEKL 341
Query: 334 XXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKK 392
LWVF+N ++NPAFDSQTKETLTLR ++FGSKCEL L K
Sbjct: 342 SKKTTKTAAIKPAMVKNHLWVFLNCYVENPAFDSQTKETLTLRATAFGSKCELPVPLLDK 401
Query: 393 VTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTE 452
V K+G+ ++++ +A FK K+LKK DGTK + GI+KL+DAN AGG S +CTLILTE
Sbjct: 402 VL-KAGLSDSIIRFAEFKSQKELKKGDGTKRSRLHGITKLDDANDAGGPRSRECTLILTE 460
Query: 453 GDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVE 512
GDSAKALA++GL VVGRD +GVFPLRGKLLNVREAS+ Q+ N+EI NIK+I+GL+ G
Sbjct: 461 GDSAKALAISGLGVVGRDHYGVFPLRGKLLNVREASAAQIAANAEIQNIKQIMGLQHGKV 520
Query: 513 YNNVKSLRYGHLMIMTDQ 530
Y N SLRYGHLMIMTDQ
Sbjct: 521 YENTTSLRYGHLMIMTDQ 538
Score = 851 (304.6 bits), Expect = 1.6e-270, Sum P(2) = 1.6e-270
Identities = 166/275 (60%), Positives = 201/275 (73%)
Query: 15 ANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTIS 74
+N P A K+IEEMYQKK+QLEHI+LRPDTYIGS E+ +W++ + M ++ +S
Sbjct: 7 SNAAAPAAGGKSIEEMYQKKTQLEHIILRPDTYIGSTERQPNHVWVHTGQK--MEYKQVS 64
Query: 75 YVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVY 134
Y PGLYKIFDEILVNAADNK RD MD +KV ID + I V N+G G+PV++H+EEGVY
Sbjct: 65 YPPGLYKIFDEILVNAADNKVRDATMDTIKVDIDAATNSIRVWNNGKGIPVDVHKEEGVY 124
Query: 135 VPELIFGHLLTSSNYDDNVKKT---------------TGGRNGYGAKLTNIFSTEFIIET 179
VPELIFGHLLTSSNY+D+ KK TGGRNGYGAKL NIFSTEFIIET
Sbjct: 125 VPELIFGHLLTSSNYNDSEKKALTVHTNIPYAPPPQITGGRNGYGAKLANIFSTEFIIET 184
Query: 180 ADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMK 239
DG RLK+YKQ FT NM K P I+ CK DNWT ++FKPDLA+F M L++DVV+L++
Sbjct: 185 CDGSRLKRYKQTFTKNMQVKGTPKITDCKASDNWTSITFKPDLARFGMEALDEDVVSLLR 244
Query: 240 KRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMY 274
+RV D+AG LGK KV NG R+ +KSF EYVDMY
Sbjct: 245 RRVYDMAGVLGKGAKVYYNGERLSIKSFQEYVDMY 279
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 2811 (994.6 bits), Expect = 1.6e-303, Sum P(3) = 1.6e-303
Identities = 599/1245 (48%), Positives = 803/1245 (64%)
Query: 1 MTVDKRLPLTTSNNANVVGPTAPNK---TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQA 57
M V P+ + N + K ++E +YQKK+QLEHILLRPDTYIGS+E TQ
Sbjct: 1 MEVSPLQPVNENMQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQ 60
Query: 58 LWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVH 117
+W+Y+E+ + +R +++VPGLYKIFDEILVNAADNKQRDPKM ++V ID E++LIS+
Sbjct: 61 MWVYDEDVG-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIW 119
Query: 118 NSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFII 177
N+G G+PV H+ E +YVP LIFG LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +
Sbjct: 120 NNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 179
Query: 178 ETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVAL 237
ETA + K +KQ + +NMG+ E + K G+++T ++F+PDL+KF M L+ D+VAL
Sbjct: 180 ETASREYKKMFKQTWMDNMGRAGEMEL-KPFNGEDYTCITFQPDLSKFKMQSLDKDIVAL 238
Query: 238 MKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPK--------SVTRFHERVNERW 289
M +R D+AG K VKV LNG+++PVK F YVDMY K S+ HE+VN RW
Sbjct: 239 MVRRAYDIAGST-KDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRW 297
Query: 290 EICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXX 349
E+C+T+SE FQQ+SFVN IAT KGG HVDYVA+Q
Sbjct: 298 EVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKGGVAVKAHQVK 357
Query: 350 X-LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWAN 408
+W+FVNALI+NP FDSQTKE +TL+ SFGS C+LSE+F+K GIVE++L+W
Sbjct: 358 NHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIG-CGIVESILNWVK 416
Query: 409 FKQSKDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVV 467
FK L KK K ++GI KL+DAN AGGRNS +CTLILTEGDSAK LA++GL VV
Sbjct: 417 FKAQVQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVV 476
Query: 468 GRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIM 527
GRD++GVFPLRGK+LNVREAS Q++ N+EI NI KI+GL+ Y + SL+ +
Sbjct: 477 GRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLK----TLR 532
Query: 528 TDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFL 587
++++ M QD DGSHIKGLLINFIH WPSLL+ FL
Sbjct: 533 YGKIMI---------------------MTDQDQDGSHIKGLLINFIHHNWPSLLR-HRFL 570
Query: 588 VEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYF 647
EFITPIVK + KN + ++FYS+P++E WK S N W +KYYKGLGTSTSKE KEYF
Sbjct: 571 EEFITPIVKVS-KNKQEMAFYSLPEFEEWKSSTP-NHKKWKVKYYKGLGTSTSKEAKEYF 628
Query: 648 QNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFE-----------PGNHL-DQ 695
++ H+ F + +D AI LAFSKK+I+ RK+WL F P ++L Q
Sbjct: 629 ADMKRHRIQFKYSGPEDDAAISLAFSKKQIDDRKEWLTNFMEDRRQRKLLGLPEDYLYGQ 688
Query: 696 KEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFS 755
Y+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+LF FKRN +E KVAQ +
Sbjct: 689 TTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLA 748
Query: 756 GYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFT 815
G V+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQFGTR GGKD+AS RYIFT
Sbjct: 749 GSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFT 808
Query: 816 RLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYN 875
LS + R LFP +L +D Q++EP WY+PIIP VL+NG+EGIGTGWS IPN++
Sbjct: 809 MLSSLARLLFPPKDDHTLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFD 868
Query: 876 PRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIK 935
R+IV N+RRL++GE PM P Y+ F GTIE+ A + Y ++G + +N TT+ I
Sbjct: 869 VREIVNNIRRLMDGEEPLPMLPSYKNFKGTIEELAPNQ----YVISGEVAILNSTTIEIS 924
Query: 936 ELPIRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEG 991
ELP+R WTQ Y+E LE +++ + I +R+Y DTTV F V ++EE + ++ G
Sbjct: 925 ELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVG 984
Query: 992 LLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXX 1051
L K FKL T+++ ++M LFD G +KKYDT IL +FF +RL++Y RK+
Sbjct: 985 LHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAE 1044
Query: 1052 XXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGA---- 1106
RFIL ++G+I++ N+ + +L+ L Q+G+ P K K + V
Sbjct: 1045 SAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENE 1104
Query: 1107 -TDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKAT 1165
+D V + + ++YLL M + LT EK L R++ +E+D L++ +
Sbjct: 1105 ESDNEKETEKSDSVTDSGPT--FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKS 1162
Query: 1166 PESLWVKDLDALDMQLDELDKSDARA-EEERMKIKGNGNGDAGPK 1209
P LW +DL ++EL+ +A+ ++E++ + G G G K
Sbjct: 1163 PSDLWKEDLATF---IEELEAVEAKEKQDEQVGLPGKGGKAKGKK 1204
Score = 102 (41.0 bits), Expect = 1.6e-303, Sum P(3) = 1.6e-303
Identities = 36/130 (27%), Positives = 60/130 (46%)
Query: 1128 YDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKS 1187
++YLL M + LT EK L R++ +E+D L++ +P LW +DL +L+ ++
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIEELEAVEAK 1184
Query: 1188 DARAEEERM-----KIKGNGNGDA-------G----PKIVAKRAPKNARKNDKKSNNARA 1231
+ + E+ + K KG A G P+I + + +KN KK N
Sbjct: 1185 EKQDEQVGLPGKGGKAKGKKTQMAEVLPSPRGQRVIPRITIEMKAEAEKKNKKKIKNEN- 1243
Query: 1232 TEAMGEMDNV 1241
TE + D V
Sbjct: 1244 TEGSPQEDGV 1253
Score = 50 (22.7 bits), Expect = 1.7e-295, Sum P(2) = 1.7e-295
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 1278 KLNEQLASTKLEPSPDQSGV-METEKVQVPAK-KKEPSKRTAAQ 1319
K +++ + E SP + GV +E K ++ K K+EP +T Q
Sbjct: 1234 KNKKKIKNENTEGSPQEDGVELEGLKQRLEKKQKREPGTKTKKQ 1277
Score = 42 (19.8 bits), Expect = 1.6e-303, Sum P(3) = 1.6e-303
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1285 STKLEPSPDQSGVMETEKVQVPAKKKEPS-KRTAAQKKVVTVET 1327
S L SP + + ++ P KK + K+TAA+ + T T
Sbjct: 1387 SVPLSSSPPATHFPDETEITNPVPKKNVTVKKTAAKSQSSTSTT 1430
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 2827 (1000.2 bits), Expect = 1.3e-301, Sum P(3) = 1.3e-301
Identities = 605/1236 (48%), Positives = 802/1236 (64%)
Query: 5 KRLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEE 64
K+ L TSN + ++ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+
Sbjct: 21 KKEELETSNKND----SSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDED 76
Query: 65 SKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVP 124
M R +++VPGLYKIFDEILVNAADNKQRD M +KV ID E ++IS+ N+G G+P
Sbjct: 77 VG-MNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIP 135
Query: 125 VEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 184
V H+ E VYVP LIFG LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA +
Sbjct: 136 VVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEY 195
Query: 185 LKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVD 244
+KQ + NNM K SE I K +G+++T ++F+PDLAKF M L+ D+VALM +R D
Sbjct: 196 KHSFKQTWMNNMMKTSEAKI-KHFDGEDYTCITFQPDLAKFKMEKLDKDIVALMTRRAYD 254
Query: 245 LAGCLGKSVKVELNGHRVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLS 296
LAG K VKV NG ++PV F YVD+Y K ++ HE NERW++C+TLS
Sbjct: 255 LAGSC-KGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLS 313
Query: 297 EGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFV 355
E FQQ+SFVN IAT KGG HVDYV +Q +WVF+
Sbjct: 314 EKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFI 373
Query: 356 NALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL 415
N LI+NP FDSQTKE +TL+ SFGSKC+LSE+F K + GIVE++L+W FK L
Sbjct: 374 NCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQL 432
Query: 416 -KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGV 474
KK K ++GI KL+DAN AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GV
Sbjct: 433 NKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGV 492
Query: 475 FPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLA 534
FPLRGK+LNVREAS Q++ N+EI NI KI+GL+ Y++ +SL+ + ++++
Sbjct: 493 FPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLK----TLRYGKIMI- 547
Query: 535 PLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPI 594
M QD DGSHIKGLLINFIH WPSLLK FL EFITPI
Sbjct: 548 --------------------MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPI 586
Query: 595 VKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHK 654
VKA+ KN + LSFYS+P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+
Sbjct: 587 VKAS-KNKQELSFYSIPEFDEWKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHR 644
Query: 655 KDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKY 702
F + +D AI LAFSKKKI+ RK+WL F H L ++ K++ Y
Sbjct: 645 ILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTY 704
Query: 703 SDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHS 762
+DF+NKELILFS +D +RSIPS+VDG KPGQRK+LF FKRN +E KVAQ +G V+E S
Sbjct: 705 NDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMS 764
Query: 763 AYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITR 822
AYHHGEQ+L TI+ +AQ+FVGSNNINLLQP GQFGTR GGKDAAS RYIFT LS + R
Sbjct: 765 AYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLAR 824
Query: 823 FLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVAN 882
LFP +L +D Q++EP WY+PIIP VL+NG+EGIGTGW+ +PNY+ R+IV N
Sbjct: 825 LLFPAVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNN 884
Query: 883 VRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRW 942
VRR+L+G PM P Y+ F GTI++ + Y V+G I V+ T+ I ELP+R W
Sbjct: 885 VRRMLDGLDPHPMLPNYKNFKGTIQELGQNQ----YAVSGEIFVVDRNTVEITELPVRTW 940
Query: 943 TQDYRE-FLESII---DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKL 998
TQ Y+E LE ++ D+ + I +++Y DTTV F V ++EE + + + GL K FKL
Sbjct: 941 TQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKL 1000
Query: 999 TTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXX 1058
TT++ ++M LFD G +KKY+T + IL+EFF +RL +Y RK+
Sbjct: 1001 QTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQ 1060
Query: 1059 VRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNS-KSIEAVVAGATDXXXXXXXXX 1117
RFIL + G+I + NR + DL+ L Q+G+ P + K + A D
Sbjct: 1061 ARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVRAWKEAQEKAAEEEDTQNQHDDSS 1120
Query: 1118 XVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDAL 1177
D++Y+L+M++ +LT EKV+ L+ RD EV+DL++ +P LW +DL A
Sbjct: 1121 SDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPSDLWKEDLAAF 1180
Query: 1178 DMQLDELDKSDARAEEERMK-IKGNG-NGDAG-PKI 1210
++ELDK +A+ E+ + + G G G PK+
Sbjct: 1181 ---VEELDKVEAQEREDILAGMSGKAIKGKVGKPKV 1213
Score = 60 (26.2 bits), Expect = 1.3e-301, Sum P(3) = 1.3e-301
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQ---VPAKK-KEPS------KRTAAQKKVVTVETSD 1329
NE+ ++ PS G+ +T+KV V AKK K PS KR QKKVV SD
Sbjct: 1454 NEEDTASVFTPS---FGLKQTDKVPSKTVAAKKGKPPSDTAPKAKRAPKQKKVVETVNSD 1510
Query: 1330 S 1330
S
Sbjct: 1511 S 1511
Score = 50 (22.7 bits), Expect = 1.3e-301, Sum P(3) = 1.3e-301
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 1198 IKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVK 1246
++G G P + PK R+ + R T N KV K
Sbjct: 1271 VEGTGEETLTPSAPVNKGPKPKREKKEPGTRVRKTPTSAGKPNAKKVKK 1319
Score = 44 (20.5 bits), Expect = 6.1e-300, Sum P(3) = 6.1e-300
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1289 EPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSD 1329
+ S +S + ETE V +P + +R AA++ T + S+
Sbjct: 1326 DESKSESDLEETEPVVIP--RDSLLRRAAAERPKYTFDFSE 1364
Score = 42 (19.8 bits), Expect = 2.5e-296, Sum P(2) = 2.5e-296
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 1186 KSDARAEEERMKIKGNGN-GDAGPKIVAKRAPKNARKNDKKSN 1227
K R ++R K G+ N GD P ++ K A K KK++
Sbjct: 1525 KGKGRGAKKR-KASGSENEGDYNP---GRKPSKTASKKPKKTS 1563
Score = 39 (18.8 bits), Expect = 2.1e-299, Sum P(3) = 2.1e-299
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 1285 STKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQK 1320
S K + + + + + T + K PSK AA+K
Sbjct: 1448 SAKFDSNEEDTASVFTPSFGLKQTDKVPSKTVAAKK 1483
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 2816 (996.3 bits), Expect = 8.8e-301, Sum P(3) = 8.8e-301
Identities = 603/1230 (49%), Positives = 800/1230 (65%)
Query: 12 SNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHR 71
S AN ++ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R
Sbjct: 37 SETANK-NDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCR 94
Query: 72 TISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEE 131
+++VPGLYKIFDEILVNAADNKQRD M +KV ID E ++IS+ N+G G+PV H+ E
Sbjct: 95 EVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVE 154
Query: 132 GVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQV 191
VYVP LIFG LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ
Sbjct: 155 KVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQT 214
Query: 192 FTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAG-CLG 250
+ NNM K SE I K +G+++T ++F+PDL+KF M L+ D+VALM +R DLAG C G
Sbjct: 215 WMNNMMKTSEAKI-KHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRG 273
Query: 251 KSVKVELNGHRVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQ 302
VKV NG ++PV F YVD+Y K ++ HE NERW++C+TLSE FQQ
Sbjct: 274 --VKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQ 331
Query: 303 VSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDN 361
+SFVN IAT KGG HVDYV +Q +WVF+N LI+N
Sbjct: 332 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIEN 391
Query: 362 PAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDG 420
P FDSQTKE +TL+ SFGSKC+LSE+F K + GIVE++L+W FK L KK
Sbjct: 392 PTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSS 450
Query: 421 TKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGK 480
K ++GI KL+DAN AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK
Sbjct: 451 VKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGK 510
Query: 481 LLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLL 540
+LNVREAS Q++ N+EI NI KI+GL+ Y++ +SL+ + ++++
Sbjct: 511 ILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLK----TLRYGKIMI------- 559
Query: 541 WFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK 600
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ K
Sbjct: 560 --------------MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-K 603
Query: 601 NGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWE 660
N + LSFYS+P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F +
Sbjct: 604 NKQELSFYSIPEFDEWKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYA 662
Query: 661 DDQDGEAIELAFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNK 708
+D AI LAFSKKKI+ RK+WL F H L ++ K++ Y+DF+NK
Sbjct: 663 GPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINK 722
Query: 709 ELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGE 768
ELILFS +D +RSIPS+VDG KPGQRK+LF FKRN +E KVAQ +G V+E SAYHHGE
Sbjct: 723 ELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGE 782
Query: 769 QSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXX 828
Q+L TI+ +AQ+FVGSNNINLLQP GQFGTR GGKDAAS RYIFT LS + R LFP
Sbjct: 783 QALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAV 842
Query: 829 XXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLN 888
+L +D Q++EP WY+PIIP VL+NG+EGIGTGW+ +PNY+ R+IV NVRR+L+
Sbjct: 843 DDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 902
Query: 889 GEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE 948
G PM P Y+ F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+E
Sbjct: 903 GLDPHPMLPNYKNFKGTIQELGQNQ----YAVSGEIFVVDRNTVEITELPVRTWTQVYKE 958
Query: 949 -FLESII---DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTIST 1004
LE ++ D+ + I +++Y DTTV F V ++EE + + + GL K FKL TT++
Sbjct: 959 QVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTC 1018
Query: 1005 SNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILG 1064
++M LFD G +KKY+T + IL+EFF +RL +Y RK+ RFIL
Sbjct: 1019 NSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILE 1078
Query: 1065 VVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQ 1124
+ G+I + NR + DL+ L Q+G+ P + A D +G
Sbjct: 1079 KIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTP 1138
Query: 1125 S-IDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDE 1183
S D++Y+L+M++ +LT EKV+ L+ RD EV+DL++ +P LW +DL A ++E
Sbjct: 1139 SGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAF---VEE 1195
Query: 1184 LDKSDARAEEERMK-IKGNG-NGDAG-PKI 1210
LDK +++ E+ + + G G G PK+
Sbjct: 1196 LDKVESQEREDVLAGMSGKAIKGKVGKPKV 1225
Score = 64 (27.6 bits), Expect = 8.8e-301, Sum P(3) = 8.8e-301
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQ---VPAKKKEPS-------KRTAAQKKVVTVETSD 1329
NE+ +++ PS G+ +T+KV V AKK +PS KR QKKVV SD
Sbjct: 1467 NEEDSASVFSPS---FGLKQTDKVPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSD 1523
Query: 1330 S 1330
S
Sbjct: 1524 S 1524
Score = 49 (22.3 bits), Expect = 8.8e-301, Sum P(3) = 8.8e-301
Identities = 22/93 (23%), Positives = 36/93 (38%)
Query: 1162 RKATPESLWVKDLDA----LDMQLDELDKSDARAE-EERMK---IKGNGNGDAGPKIVAK 1213
R+ PE +K DA L + +LD + + E +E ++G G P +
Sbjct: 1240 RRIIPEITAMK-ADASKKLLKKKKGDLDTAAVKVEFDEEFSGAPVEGAGEEALTPSVPIN 1298
Query: 1214 RAPKNARKNDKKSNNARATEAMGEMDNVTKVVK 1246
+ PK R+ + R T + KV K
Sbjct: 1299 KGPKPKREKKEPGTRVRKTPTSSGKPSAKKVKK 1331
Score = 44 (20.5 bits), Expect = 1.1e-298, Sum P(3) = 1.1e-298
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1289 EPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSD 1329
+ S +S + ETE V +P + +R AA++ T + S+
Sbjct: 1338 DESKSESDLEETEPVVIP--RDSLLRRAAAERPKYTFDFSE 1376
Score = 39 (18.8 bits), Expect = 7.4e-295, Sum P(2) = 7.4e-295
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1186 KSDARAEEERMKIKGNGN-GDAGPKIVAKRAPKNARKNDKKSN 1227
K R ++R K G+ N GD P ++ K K KK++
Sbjct: 1538 KGKGRGAKKR-KASGSENEGDYNP---GRKTSKTTSKKPKKTS 1576
Score = 38 (18.4 bits), Expect = 4.9e-298, Sum P(3) = 4.9e-298
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 1285 STKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQK 1320
S K + + + S + + + K PSK AA+K
Sbjct: 1461 SAKFDSNEEDSASVFSPSFGLKQTDKVPSKTVAAKK 1496
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 2821 (998.1 bits), Expect = 6.1e-300, Sum P(3) = 6.1e-300
Identities = 600/1215 (49%), Positives = 792/1215 (65%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R +++VPGLYKIFDE
Sbjct: 38 SVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYKIFDE 96
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRD M +KV ID E ++IS+ N+G G+PV H+ E VYVP LIFG LLT
Sbjct: 97 ILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLT 156
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ + NNM K SE I
Sbjct: 157 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKI- 215
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K +G+++T ++F+PDL+KF M L+ D+VALM +R DLAG K VKV NG ++PV
Sbjct: 216 KHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSC-KGVKVMFNGKKLPVN 274
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVD+Y K ++ HE NERW++C+TLSE FQQ+SFVN IAT KGG H
Sbjct: 275 GFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRH 334
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYV +Q +WVF+N LI+NP FDSQTKE +TL+
Sbjct: 335 VDYVVDQVVSKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQP 394
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGSKC+LSE+F K + GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 395 KSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDA 453
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK+LNVREAS Q++ N
Sbjct: 454 NDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMEN 513
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y++ +SL+ + ++++ M
Sbjct: 514 AEINNIIKIVGLQYKKSYDDAESLK----TLRYGKIMI---------------------M 548
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ KN + LSFYS+P+++
Sbjct: 549 TDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-KNKQELSFYSIPEFDE 606
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F + +D AI LAFSKK
Sbjct: 607 WKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKK 665
Query: 676 KIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNKELILFSMADLQRSIP 723
KI+ RK+WL F H L ++ K++ Y+DF+NKELILFS +D +RSIP
Sbjct: 666 KIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIP 725
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
S+VDG KPGQRK+LF FKRN +E KVAQ +G V+E SAYHHGEQ+L TI+ +AQ+FV
Sbjct: 726 SLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFV 785
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNNINLLQP GQFGTR GGKDAAS RYIFT LS + R LFP +L +D Q++
Sbjct: 786 GSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYDDNQRV 845
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGW+ +PNY+ R+IV NVRR+L G PM P Y+ F
Sbjct: 846 EPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKNFK 905
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESII---DQNDS 959
GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+E LE ++ D+ +
Sbjct: 906 GTIQELGQNQ----YAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPA 961
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +++Y DTTV F V ++EE + + + GL K FKL TT++ ++M LFD G +KKY
Sbjct: 962 LISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKY 1021
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
+T + IL+EFF +RL +Y RK+ RFIL + G+I + NR + D
Sbjct: 1022 ETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKD 1081
Query: 1080 LLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGT 1138
L+ L Q+G+ P K K + A D D++Y+L+M++ +
Sbjct: 1082 LIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLWS 1141
Query: 1139 LTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMK- 1197
LT EKV+ L+ RD EV+DL++ +P LW +DL A ++ELDK +A+ E+ +
Sbjct: 1142 LTKEKVEELIKQRDTKGREVNDLKRKSPSDLWKEDLAAF---VEELDKVEAQEREDILAG 1198
Query: 1198 IKGNG-NGDAG-PKI 1210
+ G G G PK+
Sbjct: 1199 MSGKAIKGKVGKPKV 1213
Score = 55 (24.4 bits), Expect = 6.1e-300, Sum P(3) = 6.1e-300
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQ---VPAKK-KEPS------KRTAAQKKVVTVETSD 1329
NE+ ++ PS G+ +T+K+ V AKK K PS KR QKK+V SD
Sbjct: 1454 NEEDTASVFAPS---FGLKQTDKLPSKTVAAKKGKPPSDTAPKAKRAPKQKKIVETINSD 1510
Query: 1330 S 1330
S
Sbjct: 1511 S 1511
Score = 45 (20.9 bits), Expect = 6.1e-300, Sum P(3) = 6.1e-300
Identities = 12/48 (25%), Positives = 16/48 (33%)
Query: 1199 KGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVK 1246
+G G P + PK R+ + R T N KV K
Sbjct: 1272 EGTGEETLTPSAPVNKGPKPKREKKEPGTRVRKTPTSTGKTNAKKVKK 1319
Score = 42 (19.8 bits), Expect = 1.1e-295, Sum P(2) = 1.1e-295
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 1186 KSDARAEEERMKIKGNGN-GDAGPKIVAKRAPKNARKNDKKSN 1227
K R ++R K G+ N GD P ++ K A K KK++
Sbjct: 1525 KGKGRGAKKR-KASGSENEGDYNP---GRKPSKTASKKPKKTS 1563
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 2807 (993.2 bits), Expect = 7.8e-300, Sum P(3) = 7.8e-300
Identities = 602/1231 (48%), Positives = 799/1231 (64%)
Query: 12 SNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHR 71
S AN ++ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R
Sbjct: 14 SETANK-NDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCR 71
Query: 72 TISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEE 131
+++VPGLYKIFDEILVNAADNKQRD M +KV ID E ++IS+ N+G G+PV H+ E
Sbjct: 72 EVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVE 131
Query: 132 GVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQV 191
VYVP LIFG LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ
Sbjct: 132 KVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQT 191
Query: 192 FTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGK 251
+ NNM K SE I K +G+++T ++F+PDL+KF M L+ D+VALM +R DLAG K
Sbjct: 192 WMNNMMKTSEAKI-KHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSC-K 249
Query: 252 SVKVELNGHRVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQV 303
VKV NG ++PV F YVD+Y K ++ HE NERW++C+TLSE FQQ+
Sbjct: 250 GVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI 309
Query: 304 SFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNP 362
SFVN IAT KGG HVDYV +Q +WVF+N LI+NP
Sbjct: 310 SFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENP 369
Query: 363 AFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGT 421
FDSQTKE +TL+ SFGSKC+LSE+F K + GIVE++L+W FK L KK
Sbjct: 370 TFDSQTKENMTLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSV 428
Query: 422 KTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKL 481
K ++GI KL+DAN AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK+
Sbjct: 429 KYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKI 488
Query: 482 LNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLW 541
LNVREAS Q++ N+EI NI KI+GL+ Y++ +SL+ + ++++
Sbjct: 489 LNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLK----TLRYGKIMI-------- 536
Query: 542 FILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKN 601
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ KN
Sbjct: 537 -------------MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-KN 581
Query: 602 GKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWED 661
+ LSFYS+P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F +
Sbjct: 582 KQELSFYSIPEFDEWKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAG 640
Query: 662 DQDGEAIELAFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNKE 709
+D AI LAFSKKKI+ RK+WL F H L ++ K++ Y+DF+NKE
Sbjct: 641 PEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKE 700
Query: 710 LILFSMADLQRSIPSMVD--GLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHG 767
LILFS +D +RSIPS+VD G KPGQRK+LF FKRN +E KVAQ +G V+E SAYHHG
Sbjct: 701 LILFSNSDNERSIPSLVDEIGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHG 760
Query: 768 EQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPX 827
EQ+L TI+ +AQ+FVGSNNINLLQP GQFGTR GGKDAAS RYIFT LS ++R LFP
Sbjct: 761 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPA 820
Query: 828 XXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL 887
+L +D Q++EP WY+PIIP VL+NG+EGIGTGW+ +PNY+ R+IV NVRR+L
Sbjct: 821 VDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 880
Query: 888 NGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYR 947
+G PM P Y+ F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+
Sbjct: 881 DGLDPHPMLPNYKNFKGTIQELGQNQ----YAVSGEIFVVDRNTVEITELPVRTWTQVYK 936
Query: 948 E-FLESII---DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTIS 1003
E LE ++ D+ + I +++Y DTTV F V ++EE + + + GL K FKL TT++
Sbjct: 937 EQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLT 996
Query: 1004 TSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFIL 1063
++M LFD G +KKY+T + IL+EFF +RL +Y RK+ RFIL
Sbjct: 997 CNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFIL 1056
Query: 1064 GVVNGEIVVNNRKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNG 1122
+ G+I + NR + DL+ L Q+G+ P K K + A +
Sbjct: 1057 EKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGT 1116
Query: 1123 VQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLD 1182
D++Y+L+M++ +LT EKV+ L+ RD EV+DL++ +P LW +DL A ++
Sbjct: 1117 PSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAF---VE 1173
Query: 1183 ELDKSDARAEEERMK-IKGNG-NGDAG-PKI 1210
ELDK +A+ E+ + + G G G PK+
Sbjct: 1174 ELDKVEAQEREDILAGMAGKAIKGKVGKPKV 1204
Score = 65 (27.9 bits), Expect = 7.8e-300, Sum P(3) = 7.8e-300
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQ---VPAKKKEPS-------KRTAAQKKVVTVET-S 1328
NE+ +++ PS G+ +T+KV + AKK +PS KRT QKKV T+ + S
Sbjct: 1445 NEEDSASVFSPS---FGLKQTDKVPSKTIAAKKGKPSSDTAAKPKRTPKQKKVETINSDS 1501
Query: 1329 DS 1330
DS
Sbjct: 1502 DS 1503
Score = 48 (22.0 bits), Expect = 7.8e-300, Sum P(3) = 7.8e-300
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 1162 RKATPESLWVKDLDA----LDMQLDELDKSDARAE-EERMK---IKGNGNGDAGPKIVAK 1213
R+ PE +K DA L + +LD + + E +E ++G G P
Sbjct: 1219 RRIVPEITAMK-ADASKKLLKKKKGDLDTTAVKVEFDEEFSGTPVEGTGEEALIPSAPVN 1277
Query: 1214 RAPKNARKNDKKSNNARATEAMGEMDNVTKVVK 1246
+ PK R+ + R T + KV K
Sbjct: 1278 KGPKPKREKKEPGTRVRKTPTSSGKSSAKKVKK 1310
Score = 44 (20.5 bits), Expect = 1.3e-297, Sum P(3) = 1.3e-297
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1289 EPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSD 1329
+ S +S + ETE V +P + +R AA++ T + S+
Sbjct: 1317 DESKSESDLEETEPVVIP--RDSLLRRAAAERPKYTFDFSE 1355
Score = 39 (18.8 bits), Expect = 6.7e-294, Sum P(2) = 6.7e-294
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1186 KSDARAEEERMKIKGNGN-GDAGPKIVAKRAPKNARKNDKKSN 1227
K R ++R K G+ N GD P ++ K K KK++
Sbjct: 1515 KGKGRGAKKR-KASGSENEGDYNP---GRKTSKTTSKKPKKTS 1553
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 2803 (991.8 bits), Expect = 3.4e-299, Sum P(3) = 3.4e-299
Identities = 599/1217 (49%), Positives = 792/1217 (65%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R +++VPGLYKIFDE
Sbjct: 27 SVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYKIFDE 85
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRD M +KV ID E ++IS+ N+G G+PV H+ E VYVP LIFG LLT
Sbjct: 86 ILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLT 145
Query: 146 SSNYDDNVKK--TTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPN 203
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ + NNM K SE
Sbjct: 146 SSNYDDDEKKKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAK 205
Query: 204 ISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP 263
I K +G+++T ++F+PDL+KF M L+ D+VALM +R DLAG K VKV NG ++P
Sbjct: 206 I-KHFDGEDYTCITFQPDLSKFKMEKLDRDIVALMTRRAYDLAGSC-KGVKVMFNGKKLP 263
Query: 264 VKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGG 315
V F YVD+Y K ++ HE NERW++C+TLSE FQQ+SFVN IAT KGG
Sbjct: 264 VNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGG 323
Query: 316 THVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKETLTL 374
HVDYV +Q +WVF+N LI+NP FDSQTKE +TL
Sbjct: 324 RHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTL 383
Query: 375 RQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLE 433
+ SFGSKC+LSE+F K + GIVE++L+W FK L KK K ++GI KL+
Sbjct: 384 QPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLD 442
Query: 434 DANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVL 493
DAN AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK+LNVREAS Q++
Sbjct: 443 DANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIM 502
Query: 494 NNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFC 553
N+EI NI KI+GL+ Y++ +SL+ + ++++
Sbjct: 503 ENAEINNIIKIVGLQYKKSYDDAESLK----TLRYGKIMI-------------------- 538
Query: 554 FMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDY 613
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ KN + LSFYS+P++
Sbjct: 539 -MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-KNKQELSFYSIPEF 595
Query: 614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFS 673
+ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F + +D AI LAFS
Sbjct: 596 DEWKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS 654
Query: 674 KKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNKELILFSMADLQRS 721
KKKI+ RK+WL F H L ++ K++ Y+DF+NKELILFS +D +RS
Sbjct: 655 KKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERS 714
Query: 722 IPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQD 781
IPS+VDG KPGQRK+LF FKRN +E KVAQ +G V+E SAYHHGEQ+L TI+ +AQ+
Sbjct: 715 IPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQN 774
Query: 782 FVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQ 841
FVGSNNINLLQP GQFGTR GGKDAAS RYIFT LS + R LFP +L +D Q
Sbjct: 775 FVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYDDNQ 834
Query: 842 QIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRG 901
++EP WY+PIIP VL+NG+EGIGTGW+ +PNY+ R+IV NVRR+L+G PM P Y+
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 894
Query: 902 FGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESII---DQN 957
F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+E LE ++ D+
Sbjct: 895 FKGTIQELGQNQ----YAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKT 950
Query: 958 DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIK 1017
+ I +++Y DTTV F V ++EE + + + GL K FKL TT++ ++M LFD G +K
Sbjct: 951 PALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLK 1010
Query: 1018 KYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKR 1077
KY+T + IL+EFF +RL +Y RK+ RFIL + G+I + NR +
Sbjct: 1011 KYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK 1070
Query: 1078 TDLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAI 1136
DL+ L Q+G+ P K K + A + D++Y+L+M++
Sbjct: 1071 KDLIQMLVQRGYESDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSL 1130
Query: 1137 GTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERM 1196
+LT EKV+ L+ RD EV DL++ +P LW +DL A ++ELDK +A+ E+ +
Sbjct: 1131 WSLTKEKVEELIKQRDAKGREVSDLKRKSPSDLWKEDLAAF---VEELDKVEAQEREDVL 1187
Query: 1197 K-IKGNG-NGDAG-PKI 1210
+ G G G PK+
Sbjct: 1188 AGMAGKAIKGKVGKPKV 1204
Score = 65 (27.9 bits), Expect = 3.4e-299, Sum P(3) = 3.4e-299
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQ---VPAKKKEPS-------KRTAAQKKVVTVET-S 1328
NE+ +++ PS G+ +TEKV V AKK +PS KR QKKV TV + S
Sbjct: 1444 NEEDSASVFSPS---FGLKQTEKVPSKTVAAKKGKPSLDTASKPKRAPKQKKVETVNSDS 1500
Query: 1329 DS 1330
DS
Sbjct: 1501 DS 1502
Score = 52 (23.4 bits), Expect = 7.4e-295, Sum P(2) = 7.4e-295
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 1181 LDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDN 1240
LD K RA +++ N + D+ + K APK + KK A +E G+ +
Sbjct: 1478 LDTASKPK-RAPKQKKVETVNSDSDSEFGVPKKTAPKGKGRGAKK-RKASGSENEGDYNP 1535
Query: 1241 VTKVVKPKGR 1250
K KP +
Sbjct: 1536 GRKTSKPPSK 1545
Score = 46 (21.3 bits), Expect = 3.4e-299, Sum P(3) = 3.4e-299
Identities = 24/92 (26%), Positives = 34/92 (36%)
Query: 1162 RKATPESLWVKDLDA----LDMQLDELDKSDARAE--EERMKIKGNGNGDAG-PKIVAKR 1214
R+ PE +K DA L + +LD + R + EE G +A P R
Sbjct: 1219 RRVVPEITAMK-ADASKKLLKKRKGDLDATAVRVDFDEELSGAAVEGGEEAPIPSAPVHR 1277
Query: 1215 APKNARKNDKKSNNARATEAMGEMDNVTKVVK 1246
PK R+ + R T + KV K
Sbjct: 1278 GPKPKREKKEPGTRVRKTPTSSGKPSAKKVKK 1309
Score = 44 (20.5 bits), Expect = 5.6e-297, Sum P(3) = 5.6e-297
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1289 EPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSD 1329
+ S +S + ETE V +P + +R AA++ T + S+
Sbjct: 1316 DESKSESDLEETEPVVIP--RDSLLRRAAAERPKYTFDFSE 1354
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 1421 (505.3 bits), Expect = 1.9e-298, Sum P(3) = 1.9e-298
Identities = 286/524 (54%), Positives = 370/524 (70%)
Query: 16 NVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISY 75
N+ K+IEE+YQKK L+ ILLRPDTYIGS E+ + LW++E+ K M+HR +S+
Sbjct: 92 NIASSAKKGKSIEEIYQKKELLDQILLRPDTYIGSTERQEEELWVWED--KRMVHRKVSF 149
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYV 135
VPG+YKIFDEILVNAADNKQR+ M +KVVID+E ISV N G G+P+++H E +Y+
Sbjct: 150 VPGIYKIFDEILVNAADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYI 209
Query: 136 PELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNN 195
PELIFG+LLTSS+YDD+ K+ TGGRNG+GAKL NIFST+FI+E AD K K YKQ FTNN
Sbjct: 210 PELIFGNLLTSSHYDDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNN 269
Query: 196 MGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV 255
M K +P I+ + ++TK++F P+L +F M +DD+VAL+ KRV D+AGC ++KV
Sbjct: 270 MRSKEDPKITSYQNKTDYTKITFYPELDRFGMVEFDDDLVALLSKRVYDIAGC-NPTLKV 328
Query: 256 ELNGHRVPVKSFAEYVDMY-PKSVTR---FHERVNERWEICVTLS-EGQFQQVSFVNGIA 310
LN + ++SF +Y+++Y P ++E+V++RWE+ VTLS E QF QVSFVN I
Sbjct: 329 SLNDEELGIRSFEKYINLYFPDEENAPKVYYEKVSDRWELAVTLSKESQFNQVSFVNSIC 388
Query: 311 TIKGGTHVDY-VANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTK 369
T+KGGTHV + ++N L VFVN LI+NP FDSQTK
Sbjct: 389 TVKGGTHVTHALSNIVTAIQEQVNKKNKGSADIKPAFIKNHLSVFVNCLIENPHFDSQTK 448
Query: 370 ETLTLRQSSFGSKCELSEEFLKKVT-AKSGIVETLLSWANFKQSKDLKKN--DGTKTEDV 426
ETLT + SSFGS+CE SE+F+K+V +KSGIV ++L +A FK LK++ G K V
Sbjct: 449 ETLTSKISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSALKRSTSSGGKKGKV 508
Query: 427 RGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVRE 486
I KL+DANLAGG SE CTLILTEGDSAK+LA AG+SVVG+D +G FPL+GKLLNVR+
Sbjct: 509 -SIPKLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLNVRD 567
Query: 487 ASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQ 530
S+ +V+NN EI NI ILGLK G Y + LRYGHLMIMTDQ
Sbjct: 568 QST-KVINNDEINNIVTILGLKYGKVYETLSDLRYGHLMIMTDQ 610
Score = 1187 (422.9 bits), Expect = 1.9e-298, Sum P(3) = 1.9e-298
Identities = 225/401 (56%), Positives = 288/401 (71%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M QDHDGSHIKGL+IN +H FWP+LL++P FLVEFITPIVK N K +SFY+MP++
Sbjct: 607 MTDQDHDGSHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFL 666
Query: 615 AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK 674
W+E+ N W +KYYKGLGTST EGKEYF ++ HK DF W D+ + IELAFSK
Sbjct: 667 KWRET---NDKGWDVKYYKGLGTSTPGEGKEYFSDLERHKIDFEW-DEGANDNIELAFSK 722
Query: 675 KKIEARKKWLLQFEPGNHLDQ-KEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQ 733
+ + RKKW+ + G L+Q K + YSDF+NKEL+LFS+AD +RSIP++VDGLK
Sbjct: 723 SRADDRKKWMAEHIEGTFLEQFGVKKLTYSDFINKELVLFSIADCERSIPNIVDGLKTSH 782
Query: 734 RKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQP 793
RK L+ FKRN KE KVAQ GYVSEHSAYHHGE SL STI+GMAQ+FVGSNNINLL P
Sbjct: 783 RKTLYSCFKRNLKKEIKVAQLIGYVSEHSAYHHGEASLYSTIVGMAQEFVGSNNINLLNP 842
Query: 794 NGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIP 853
G +GTR GGKD +SARYI TRL+ I R ++ + +DG++++P +Y+P+IP
Sbjct: 843 AGSYGTRIAGGKDCSSARYIHTRLNDIARAVYHADDDPILSCVVDDGKKVQPKFYIPVIP 902
Query: 854 TVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKT-ASK 912
+LVNG GIGTGWSS IPNYNPRD++ N+R ++G+ ++P+ PWYRGF G+IE SK
Sbjct: 903 MILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAIDGKPLKPIKPWYRGFLGSIEANQGSK 962
Query: 913 EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESI 953
G Y GI +++++ I ELPI WTQDYRE L+ +
Sbjct: 963 VQGGQYLSKGIWKKLSDNRFEITELPIGFWTQDYRELLDEL 1003
Score = 299 (110.3 bits), Expect = 1.9e-298, Sum P(3) = 1.9e-298
Identities = 81/280 (28%), Positives = 140/280 (50%)
Query: 958 DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIK 1017
++ ++ + YS ++T+ F + +++ + + K FKL +TI+ +NM +FD +G I+
Sbjct: 1050 EATVKSYTNYSSESTIHFII----DTIQPVDEINIEKVFKLVSTINETNMVVFDEEGRIQ 1105
Query: 1018 KYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKR 1077
++ T + E FF +R++ Y+ RK RFIL VVN E+V++N K+
Sbjct: 1106 RFATTTALQEHFFPLRIKHYQMRKDFLSERLSEEYSRLSNKARFILAVVNKELVISNVKK 1165
Query: 1078 TDLLLELRQKGFTPF-PKNS-KSIEAVVA---GATDXXXXXXXXXXVVNGVQSID----- 1127
DL+ +L++ F KNS KS + A D +G Q
Sbjct: 1166 VDLINKLKEMKFDRIINKNSNKSARDKIKKKKNAFDEEDAAISSDEEKDGAQEEQDDDTK 1225
Query: 1128 -YDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDK 1186
YDYLLS+ + +LTLE+V+ L+ +RD +E D L + ++ +DLDAL+ LD+ D
Sbjct: 1226 GYDYLLSLPLWSLTLERVKKLIEERDSKKKEWDILLSTPIQEIYKRDLDALEKALDDQDA 1285
Query: 1187 SDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKS 1226
D + + +K A P+ AK+ K+ K++
Sbjct: 1286 YDESLKNQTESLKKRTKTKALPR--AKKISAKVVKDTKEA 1323
Score = 41 (19.5 bits), Expect = 1.9e-177, Sum P(3) = 1.9e-177
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 938 PIRRWTQDYREFLESIIDQNDSFIRGFRQY 967
PI+ W YR FL SI S ++G QY
Sbjct: 943 PIKPW---YRGFLGSIEANQGSKVQG-GQY 968
Score = 38 (18.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 181 DGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLA--KFNMTHL 230
DGK LK K + +G SK + G +K +K L+ +F +T L
Sbjct: 937 DGKPLKPIKPWYRGFLGSIEANQGSKVQGGQYLSKGIWKK-LSDNRFEITEL 987
Score = 37 (18.1 bits), Expect = 8.9e-271, Sum P(3) = 8.9e-271
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1299 ETEKVQVPAKKKEPSKRTAAQKK 1321
E E KKKE ++ AA +K
Sbjct: 1002 ELETPGTRKKKKEEKEKKAASRK 1024
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 2814 (995.6 bits), Expect = 1.3e-297, Sum P(2) = 1.3e-297
Identities = 598/1239 (48%), Positives = 798/1239 (64%)
Query: 8 PLTTSNNANVVGPTAPNK------TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIY 61
PL N V T N+ +IE +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y
Sbjct: 5 PLQPVNENMQVSKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVY 64
Query: 62 EEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGD 121
+E+ + +R ++YVPGLYKIFDEILVNAADNKQRDPKM +++ ID E++LIS+ N+G
Sbjct: 65 DEDIG-INYREVTYVPGLYKIFDEILVNAADNKQRDPKMSCIRITIDPENNLISIWNNGK 123
Query: 122 GVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETAD 181
G+PV H+ E +YVP LIFG LLTSSNYDD KK TGGRNGYGAKL NIFST+F +ETA
Sbjct: 124 GIPVVEHKVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETAS 183
Query: 182 GKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKR 241
+ K +KQ + +NMGK E + K G+++T ++F PDL+KF M L+ D+VALM +R
Sbjct: 184 REYKKMFKQTWMDNMGKAGEMEL-KPFSGEDYTCITFHPDLSKFKMQSLDKDIVALMVRR 242
Query: 242 VVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKS--------VTRFHERVNERWEICV 293
D+AG K VKV LNG+R+PVK F YVD+Y K + HE+VN RWE+C+
Sbjct: 243 AYDIAGST-KDVKVYLNGNRLPVKGFRSYVDLYLKDKVDETGNPLKVIHEQVNHRWEVCL 301
Query: 294 TLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LW 352
T+SE FQQ+SFVN IAT KGG HVDYVA+Q +W
Sbjct: 302 TMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKGGVAVKAHQVKNHMW 361
Query: 353 VFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQS 412
+FVNALI+NP FDSQTKE +TL+ SFGS C+LSE+F+K GIVE++L+W FK
Sbjct: 362 IFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQ 420
Query: 413 KDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR 471
L KK K ++GI KL+DAN AGGRNS +CTLILTEGDSAK LA++GL VVGRD+
Sbjct: 421 IQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK 480
Query: 472 FGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQV 531
+GVFPLRGK+LNVREAS Q++ N+EI NI KI+GL+ Y + SL+ + ++
Sbjct: 481 YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLK----TLRYGKI 536
Query: 532 LLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFI 591
++ M QD DGSHIKGLLINFIH WPSLL+ FL EFI
Sbjct: 537 MI---------------------MTDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFI 574
Query: 592 TPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNIT 651
TPIVK + KN + ++FYS+P++E WK S N W +KYYKGLGTSTSKE KEYF ++
Sbjct: 575 TPIVKVS-KNKQEMAFYSLPEFEEWKSSTP-NHKKWKVKYYKGLGTSTSKEAKEYFADMK 632
Query: 652 LHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFE-----------PGNHL-DQKEKY 699
H+ F + +D AI LAFSKK+ + RK+WL F P ++L Q Y
Sbjct: 633 RHRIQFKYSGPEDDAAISLAFSKKQTDDRKEWLTHFMEDRRQRKLLGLPDDYLYGQATTY 692
Query: 700 IKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVS 759
+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+LF FKRN +E KVAQ +G V+
Sbjct: 693 LTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVA 752
Query: 760 EHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSP 819
E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP
Sbjct: 753 EMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSP 812
Query: 820 ITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDI 879
+ R LFP +L +D Q++EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++
Sbjct: 813 LARLLFPAKDDHTLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREV 872
Query: 880 VANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPI 939
V N+RRL++GE PM P Y+ F GT+E+ A + Y ++G + +N TT+ I ELPI
Sbjct: 873 VNNIRRLMDGEEPLPMLPSYKNFKGTVEELAPNQ----YVISGEVAILNSTTIEISELPI 928
Query: 940 RRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKK 995
R WTQ Y+E LE +++ + I +R+Y DTTV F V ++EE + ++ GL K
Sbjct: 929 RTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERAGLHKV 988
Query: 996 FKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXX 1055
FKL T+++ ++M LFD G +KKYDT IL +FF +RL++Y RK+
Sbjct: 989 FKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKL 1048
Query: 1056 XXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXX 1114
RFIL ++G+I++ N+ + +L+ L Q+G+ P K K + V +
Sbjct: 1049 NNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDS 1108
Query: 1115 XXXXVVNGVQSID---YDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWV 1171
+ + ++YLL M + LT EK L R++ +E++ L++ +P LW
Sbjct: 1109 EKETEKSDSATDSGPTFNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWK 1168
Query: 1172 KDLDALDMQLDELDKSDARA-EEERMKIKGNGNGDAGPK 1209
+DL A ++EL+ +A+ ++E++ + G G G K
Sbjct: 1169 EDLAAF---VEELEVVEAKEKQDEQIGLPGKGGKAKGKK 1204
Score = 67 (28.6 bits), Expect = 1.3e-297, Sum P(2) = 1.3e-297
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 1278 KLNEQLASTKLEPSPDQSGV-METEKVQVPAK-KKEPSKRTAAQ 1319
K+ +++ S E SP + G+ ME++K+++ K K+EP +T Q
Sbjct: 1234 KIKKKIKSENTEGSPQEDGMEMESQKLRLEKKQKREPVTKTKKQ 1277
Score = 46 (21.3 bits), Expect = 2.2e-295, Sum P(2) = 2.2e-295
Identities = 37/174 (21%), Positives = 66/174 (37%)
Query: 1162 RKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARK 1221
R+A ++ + DLD+ DE D SD + + + N + PKI + +PK+ K
Sbjct: 1318 RRAAAKTKFTMDLDS-----DE-DFSDFDEDTQDDFVPSNASP---PKI--QTSPKHNNK 1366
Query: 1222 NDK--KSNNARATEAMGEMDNVTKVVKPKGRAGLXXXXXXXXXXXXXXXXXXXXQRLAKL 1279
K KS ++ TE + D+ P + ++ A
Sbjct: 1367 ELKPLKSASSEVTEL--DADDAEDNAPPPPSSPAADFPAVTETINPVPKKNVTAKKTAAK 1424
Query: 1280 NEQLAST---KLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
++ ST K +P ++ V K P +T ++K + + SDS
Sbjct: 1425 SQSSTSTTGTKKRAAPKKTKKDPDLDSDVSKKPNAPKTKTRRKRKASSSDDSDS 1478
Score = 40 (19.1 bits), Expect = 9.5e-295, Sum P(2) = 9.5e-295
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 1381 PEASLGQRLLTEMLKPAESSPEKKVRK 1407
P S G+R++ + + ++ EKK++K
Sbjct: 1212 PSPS-GKRVIPRVTEEMKAEAEKKIKK 1237
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 2834 (1002.7 bits), Expect = 2.1e-297, Sum P(2) = 2.1e-297
Identities = 599/1201 (49%), Positives = 790/1201 (65%)
Query: 21 TAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLY 80
T+ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R +++VPGLY
Sbjct: 50 TSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLY 108
Query: 81 KIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIF 140
KIFDEILVNAADNKQRD M +K+ ID E ++IS+ N+G G+PV H+ E VYVP LIF
Sbjct: 109 KIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF 168
Query: 141 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKS 200
G LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ + NNM K S
Sbjct: 169 GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTS 228
Query: 201 EPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGH 260
EP I K EGD++T ++F+PDL+KF M +L+ D+V+LM +R DLAG K VKV LNG
Sbjct: 229 EPKI-KHFEGDDYTCITFQPDLSKFKMENLDKDIVSLMTRRAYDLAGSC-KGVKVMLNGK 286
Query: 261 RVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATI 312
++PV F YVD+Y K ++ HE VNERW++C+TLSE FQQ+SFVN IAT
Sbjct: 287 KLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGFQQISFVNSIATT 346
Query: 313 KGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKET 371
KGG HVDYV +Q +WVFVN LI+NP+FDSQTKE
Sbjct: 347 KGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKEN 406
Query: 372 LTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGIS 430
+TL+ SFGSKC+LSE+F K + GI+E++L+W FK L KK K ++GI
Sbjct: 407 MTLQPKSFGSKCQLSEKFFK-AASNCGIIESILNWVKFKAQTQLNKKCSSVKHSKIKGIP 465
Query: 431 KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSN 490
KL+DAN AGG++S CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK+LNVREAS
Sbjct: 466 KLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 525
Query: 491 QVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWIT 550
Q++ N+EI NI KI+GL+ Y + +SL+ S I+I
Sbjct: 526 QIMENAEINNIIKIVGLQYKKSYEDPESLK----------------SLRYGKIMI----- 564
Query: 551 TFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSM 610
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ KN + LSFYS+
Sbjct: 565 ----MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-KNKQELSFYSI 618
Query: 611 PDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIEL 670
P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F + +D AI L
Sbjct: 619 PEFDEWKKHME-NHKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITL 677
Query: 671 AFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNKELILFSMADL 718
AFSKKKI+ RK+WL F H L ++ K++ Y+DF+NKELILFS +D
Sbjct: 678 AFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDN 737
Query: 719 QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGM 778
+RSIPS+VDGLKPGQRK+LF FKRN +E KVAQ +G V+E SAYHHGEQ+L TI+ +
Sbjct: 738 ERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNL 797
Query: 779 AQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNE 838
AQ+FVGSNN+NLLQP GQFGTR GGKDAAS RYIFT LSP+ R LFP +L +
Sbjct: 798 AQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFLYD 857
Query: 839 DGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPW 898
D Q++EP WY+PIIP VLVNG+EGIGTGW+ +PNY+ R+IV NVRR+L+G PM P
Sbjct: 858 DNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPN 917
Query: 899 YRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESII--- 954
Y+ F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+E LE ++
Sbjct: 918 YKNFRGTIQELGQNQ----YVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGT 973
Query: 955 DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKG 1014
++ + I +++Y DTTV F V ++EE + + + GL K FKL T+++ ++M LFD G
Sbjct: 974 EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMG 1033
Query: 1015 VIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNN 1074
+KKY+T + IL+EFF +RL +Y RK+ RFIL + G+I + N
Sbjct: 1034 CLKKYETVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIEN 1093
Query: 1075 RKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLS 1133
R + DL+ L Q+G+ P K K + A D D++Y+L+
Sbjct: 1094 RSKRDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDPQNANDDASSASGSTSGPDFNYILN 1153
Query: 1134 MAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEE 1193
M++ +LT EKV+ L+ RD E++DL++ + LW +DL A ++EL+K +A+ E
Sbjct: 1154 MSLWSLTKEKVEELIKHRDSKERELNDLKRKSASDLWKEDLAAF---VEELEKVEAQERE 1210
Query: 1194 E 1194
+
Sbjct: 1211 D 1211
Score = 45 (20.9 bits), Expect = 2.1e-297, Sum P(2) = 2.1e-297
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 1192 EEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPK 1248
+EE ++ G GD A K +KK R A + K VK +
Sbjct: 1281 DEEFGGVQAEGGGDDTVNTAASGTKTPKLKREKKEPGTRVRRAPSSTKSSAKKVKKR 1337
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 2832 (1002.0 bits), Expect = 3.5e-297, Sum P(2) = 3.5e-297
Identities = 599/1201 (49%), Positives = 789/1201 (65%)
Query: 21 TAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLY 80
T+ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R +++VPGLY
Sbjct: 50 TSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLY 108
Query: 81 KIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIF 140
KIFDEILVNAADNKQRD M +K+ ID E ++IS+ N+G G+PV H+ E VYVP LIF
Sbjct: 109 KIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF 168
Query: 141 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKS 200
G LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ + NNM K S
Sbjct: 169 GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTS 228
Query: 201 EPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGH 260
EP I K EGD++T ++F+PDL+KF M L+ D+V+LM +R DLAG K VKV LNG
Sbjct: 229 EPKI-KHFEGDDYTCITFQPDLSKFKMEKLDKDIVSLMTRRAYDLAGSC-KGVKVMLNGK 286
Query: 261 RVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATI 312
++PV F YVD+Y K ++ HE VNERW++C+TLSE FQQ+SFVN IAT
Sbjct: 287 KLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGFQQISFVNSIATT 346
Query: 313 KGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKET 371
KGG HVDYV +Q +WVFVN LI+NP+FDSQTKE
Sbjct: 347 KGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKEN 406
Query: 372 LTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGIS 430
+TL+ SFGSKC+LSE+F K + GI+E++L+W FK L KK K ++GI
Sbjct: 407 MTLQPKSFGSKCQLSEKFFK-AASNCGIIESILNWVKFKAQTQLNKKCSSVKHSKIKGIP 465
Query: 431 KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSN 490
KL+DAN AGG++S CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK+LNVREAS
Sbjct: 466 KLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 525
Query: 491 QVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWIT 550
Q++ N+EI NI KI+GL+ Y + +SL+ S I+I
Sbjct: 526 QIMENAEINNIIKIVGLQYKKSYEDPESLK----------------SLRYGKIMI----- 564
Query: 551 TFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSM 610
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ KN + LSFYS+
Sbjct: 565 ----MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-KNKQELSFYSI 618
Query: 611 PDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIEL 670
P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F + +D AI L
Sbjct: 619 PEFDEWKKHME-NHKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITL 677
Query: 671 AFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNKELILFSMADL 718
AFSKKKI+ RK+WL F H L ++ K++ Y+DF+NKELILFS +D
Sbjct: 678 AFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDN 737
Query: 719 QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGM 778
+RSIPS+VDGLKPGQRK+LF FKRN +E KVAQ +G V+E SAYHHGEQ+L TI+ +
Sbjct: 738 ERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNL 797
Query: 779 AQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNE 838
AQ+FVGSNN+NLLQP GQFGTR GGKDAAS RYIFT LSP+ R LFP +L +
Sbjct: 798 AQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFLYD 857
Query: 839 DGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPW 898
D Q++EP WY+PIIP VLVNG+EGIGTGW+ +PNY+ R+IV NVRR+L+G PM P
Sbjct: 858 DNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPN 917
Query: 899 YRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESII--- 954
Y+ F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+E LE ++
Sbjct: 918 YKNFRGTIQELGQNQ----YVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGT 973
Query: 955 DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKG 1014
++ + I +++Y DTTV F V ++EE + + + GL K FKL T+++ ++M LFD G
Sbjct: 974 EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMG 1033
Query: 1015 VIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNN 1074
+KKY+T + IL+EFF +RL +Y RK+ RFIL + G+I + N
Sbjct: 1034 CLKKYETVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIEN 1093
Query: 1075 RKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLS 1133
R + DL+ L Q+G+ P K K + A D D++Y+L+
Sbjct: 1094 RSKRDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDPQNANDDASSASGSTSGPDFNYILN 1153
Query: 1134 MAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEE 1193
M++ +LT EKV+ L+ RD E++DL++ + LW +DL A ++EL+K +A+ E
Sbjct: 1154 MSLWSLTKEKVEELIKHRDSKERELNDLKRKSASDLWKEDLAAF---VEELEKVEAQERE 1210
Query: 1194 E 1194
+
Sbjct: 1211 D 1211
Score = 45 (20.9 bits), Expect = 3.5e-297, Sum P(2) = 3.5e-297
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 1192 EEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPK 1248
+EE ++ G GD A K +KK R A + K VK +
Sbjct: 1281 DEEFGGVQAEGGGDDTVNTAASGTKTPKLKREKKEPGTRVRRAPSSTKSSAKKVKKR 1337
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 2803 (991.8 bits), Expect = 4.4e-297, Sum P(3) = 4.4e-297
Identities = 588/1213 (48%), Positives = 793/1213 (65%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
+IE +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ + +R +++VPGLYKIFDE
Sbjct: 28 SIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDE 86
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V ID E+++IS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 87 ILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIFGQLLT 146
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ + +NMG+ + +
Sbjct: 147 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMEL- 205
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K G+++T ++F+PDL+KF M L+ D+VALM +R D+AG K VKV LNG+ +PVK
Sbjct: 206 KPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST-KDVKVFLNGNSLPVK 264
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVD+Y K S+ HE+VN RWE+C+T+SE FQQ+SFVN IAT KGG H
Sbjct: 265 GFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVCLTMSERGFQQISFVNSIATSKGGRH 324
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYVA+Q +W+FVNALI+NP FDSQTKE +TL+
Sbjct: 325 VDYVADQIVSKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 384
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGS C+LSE+F+K GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 385 KSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQIQLNKKCSAVKHTKIKGIPKLDDA 443
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AG RNS +CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 444 NDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 503
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y + SL+ + ++++ M
Sbjct: 504 AEINNIIKIVGLQYKKNYEDEDSLK----TLRYGKIMI---------------------M 538
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ FL EFITPIVK + KN + ++FYS+P++E
Sbjct: 539 TDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFITPIVKVS-KNKQEIAFYSLPEFEE 596
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N W +KYYKGLGTSTSKE KEYF ++ H+ F + +D AI LAFSKK
Sbjct: 597 WKSSTP-NHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKK 655
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
+++ RK+WL F P ++L Q Y+ Y+DF+NKELILFS +D +RSIP
Sbjct: 656 QVDDRKEWLTNFMEDRRQRKLLGLPEDYLYGQSTSYLTYNDFINKELILFSNSDNERSIP 715
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
SMVDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 716 SMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFV 775
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 776 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLRFLYDDNQRV 835
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ F
Sbjct: 836 EPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKNFK 895
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESII---DQNDS 959
GTIE+ AS + Y + G + ++ TT+ I ELPIR WTQ Y+E LE ++ ++ S
Sbjct: 896 GTIEELASNQ----YVINGEVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPS 951
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +R+Y DTTV F + ++EE + ++ GL K FKL ++++ ++M LFD G +KKY
Sbjct: 952 LITDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKY 1011
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
DT IL +FF +RL++Y RK+ RFIL ++G+IV+ N+ + +
Sbjct: 1012 DTVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKE 1071
Query: 1080 LLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQS-IDYDYLLSMAIG 1137
L+ L Q+G+ P K K + V + + ++ ++YLL M +
Sbjct: 1072 LIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLW 1131
Query: 1138 TLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEERM 1196
LT EK L R++ +E++ L++ +P LW +DL ++EL+ +A+ ++E++
Sbjct: 1132 YLTKEKKDELCKQRNEKEQELNTLKQKSPSDLWKEDLAVF---IEELEVVEAKEKQDEQV 1188
Query: 1197 KIKGNGNGDAGPK 1209
+ G G K
Sbjct: 1189 GLPGKAGKAKGKK 1201
Score = 50 (22.7 bits), Expect = 4.4e-297, Sum P(3) = 4.4e-297
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 1287 KLEP-SPDQSGVMETEK-VQVPAKKKEPSKRTAAQKKVVTVE 1326
K P S +S V E V VP ++KE +R+AA K TV+
Sbjct: 1286 KKNPWSDSESDVSSNESNVDVPPRQKE--QRSAAAKAKFTVD 1325
Score = 42 (19.8 bits), Expect = 8.5e-294, Sum P(2) = 8.5e-294
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 1283 LASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETS 1328
L S + P GV + ++ +PSK+T KK T S
Sbjct: 1377 LESDVKDSVPASPGVPAAD-FPAETEQSKPSKKTVGVKKTATKSQS 1421
Score = 41 (19.5 bits), Expect = 4.4e-297, Sum P(3) = 4.4e-297
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 1375 PAKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGSML 1421
PA+ +Q + S + + ++SS K RA+P KS S L
Sbjct: 1397 PAETEQSKPSKKTVGVKKTATKSQSSVSTAGTKKRAAPKGTKSDSAL 1443
Score = 41 (19.5 bits), Expect = 1.1e-293, Sum P(2) = 1.1e-293
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 1386 GQRLLTEMLKPAESSPEKKVRK 1407
G+R++ ++ ++ EKK+RK
Sbjct: 1214 GKRVIPQVTVEMKAEAEKKIRK 1235
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 2805 (992.5 bits), Expect = 7.3e-297, Sum P(2) = 7.3e-297
Identities = 602/1231 (48%), Positives = 798/1231 (64%)
Query: 12 SNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHR 71
S AN ++ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R
Sbjct: 29 SETANK-NDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCR 86
Query: 72 TISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEE 131
+++VPGLYKIFDEILVNAADNKQRD M +KV ID E ++IS+ N+G G+PV H+ E
Sbjct: 87 EVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVE 146
Query: 132 GVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQV 191
VYVP LIFG LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ
Sbjct: 147 KVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQT 206
Query: 192 FTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGK 251
+ NNM K SE I K +G+++T ++F+PDLAKF M L+ D+VALM +R DLAG K
Sbjct: 207 WMNNMMKTSEAKI-KHFDGEDYTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSC-K 264
Query: 252 SVKVELNGHRVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQV 303
VKV NG ++PV F YVD+Y K ++ HE NERW++C+TLSE FQQ+
Sbjct: 265 GVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI 324
Query: 304 SFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNP 362
SFVN IAT KGG HVDYV +Q +WVF+N LI+NP
Sbjct: 325 SFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENP 384
Query: 363 AFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGT 421
FDSQTKE +TL+ SFGSKC+LSE+F K + GIVE++L+W FK L KK
Sbjct: 385 TFDSQTKENMTLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSV 443
Query: 422 KTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKL 481
K ++GI KL+DAN AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK+
Sbjct: 444 KYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKI 503
Query: 482 LNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLW 541
LNVREAS Q++ N+EI NI KI+GL+ Y++ +SL+ + ++++
Sbjct: 504 LNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLK----TLRYGKIMI-------- 551
Query: 542 FILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKN 601
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ KN
Sbjct: 552 -------------MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-KN 596
Query: 602 GKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWED 661
+ L+FYS+P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F +
Sbjct: 597 KQELAFYSIPEFDEWKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAG 655
Query: 662 DQDGEAIELAFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNKE 709
+D AI LAFSKKKI+ RK+WL F H L ++ K++ Y+DF+NKE
Sbjct: 656 PEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKE 715
Query: 710 LILFSMADLQRSIPSMVD--GLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHG 767
LILFS +D +RSIPS+VD G KPGQRK+LF FKRN +E KVAQ +G V+E SAYHHG
Sbjct: 716 LILFSNSDNERSIPSLVDETGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHG 775
Query: 768 EQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPX 827
EQ+L TI+ +AQ+FVGSNNINLLQP GQFGTR GGKDAAS RYIFT LS + R LFP
Sbjct: 776 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 835
Query: 828 XXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL 887
+L +D Q++EP WY+PIIP VL+NG+EGIGTGW+ +PNY+ R+IV NVRR+L
Sbjct: 836 VDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 895
Query: 888 NGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYR 947
+G PM P Y+ F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+
Sbjct: 896 DGLDPHPMLPNYKNFKGTIQELGQNQ----YAVSGEIFVVDRNTVEITELPVRTWTQVYK 951
Query: 948 E-FLESII---DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTIS 1003
E LE ++ D+ + I +++Y DTTV F V ++EE + + + GL K FKL TT++
Sbjct: 952 EQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLT 1011
Query: 1004 TSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFIL 1063
++M LFD G +KKY+T + IL+EFF +RL +Y RK+ RFIL
Sbjct: 1012 CNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFIL 1071
Query: 1064 GVVNGEIVVNNRKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNG 1122
+ G+I + NR + DL+ L Q+G+ P K K + A +
Sbjct: 1072 EKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGT 1131
Query: 1123 VQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLD 1182
D++Y+L+M++ +LT EKV+ L+ RD EV+DL++ +P LW +DL A ++
Sbjct: 1132 PSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAF---VE 1188
Query: 1183 ELDKSDARAEEERMK-IKGNG-NGDAG-PKI 1210
ELDK +A+ E+ + + G G G PK+
Sbjct: 1189 ELDKVEAQEREDVLAGMAGKAIKGKIGKPKV 1219
Score = 69 (29.3 bits), Expect = 7.3e-297, Sum P(2) = 7.3e-297
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQ---VPAKKKEPS-------KRTAAQKKVVTVET-S 1328
NE+ +++ PS G+ +TEKV V AKK +PS KRT QKKV T+ + S
Sbjct: 1459 NEEDSASVFSPS---FGLKQTEKVPSKTVAAKKGKPSLDTTPKPKRTPKQKKVETINSDS 1515
Query: 1329 DS 1330
DS
Sbjct: 1516 DS 1517
Score = 46 (21.3 bits), Expect = 2.0e-294, Sum P(2) = 2.0e-294
Identities = 24/102 (23%), Positives = 44/102 (43%)
Query: 1131 LLSMAIGTLTLEKVQG--LLADRDKLNEEVDDLRKATPESLWVKDLDA-LDMQLDELDKS 1187
+ S + G EKV + A + K + + K TP+ V+ +++ D + + K
Sbjct: 1466 VFSPSFGLKQTEKVPSKTVAAKKGKPSLDTTPKPKRTPKQKKVETINSDSDSEFG-IPKK 1524
Query: 1188 DARAEEER--MKIKGNGNGDAGPKIVAKRAPKNARKNDKKSN 1227
A + R K K +G+ + G +R K K KK++
Sbjct: 1525 TAPKGKGRGAKKRKASGSENEGDYNPGRRTSKTTSKKPKKTS 1566
Score = 44 (20.5 bits), Expect = 3.2e-294, Sum P(2) = 3.2e-294
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 1285 STKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETS 1328
S K + + + S + + + +K PSK AA+K +++T+
Sbjct: 1453 SAKFDSNEEDSASVFSPSFGLKQTEKVPSKTVAAKKGKPSLDTT 1496
Score = 38 (18.4 bits), Expect = 1.4e-293, Sum P(2) = 1.4e-293
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 1289 EPSPDQSGVMETEKVQVPAKKKEPSKRTAAQK 1320
+ S +S + ETE V +P + +R AA++
Sbjct: 1332 DESKSESDLEETEPVVIP--RDSLLRRAAAER 1361
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 2795 (988.9 bits), Expect = 9.1e-297, Sum P(3) = 9.1e-297
Identities = 597/1219 (48%), Positives = 790/1219 (64%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+++E+ R +++VPGLYKIFDE
Sbjct: 30 SVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVGLNC-RDVTFVPGLYKIFDE 88
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRD M +KV ID E++ ISV N+G G+PV H+ E VYVP LIFG LLT
Sbjct: 89 ILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLT 148
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ +T+NMGK E +
Sbjct: 149 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTL- 207
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K +G+++T V+F+PDL+KF MT L+ D+VALM +R D+AG K VKV LNG R+PVK
Sbjct: 208 KHFDGEDYTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAGST-KDVKVFLNGKRLPVK 266
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVD+Y K ++ HE VN RWE+C+TLSE FQQVSFVN IAT KGG H
Sbjct: 267 GFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGFQQVSFVNSIATTKGGRH 326
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYVA+Q +W+FVN+LI+NP FDSQTKE +TL+
Sbjct: 327 VDYVADQIVTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQA 386
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGS C+LSE+F+K GIVE++L+W FK L KK K ++G+ KL+DA
Sbjct: 387 KSFGSTCKLSEKFIKGAVG-CGIVESILNWVKFKAQTQLNKKCSAVKHTKIKGVPKLDDA 445
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AG +NS CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 446 NDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMEN 505
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y + +SL+ S I+I M
Sbjct: 506 AEINNIIKIVGLQYKKNYEDRESLK----------------SLRYGKIMI---------M 540
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ +FL EFITPI+K + KN + + FYS+P++E
Sbjct: 541 TDQDQDGSHIKGLLINFIHHNWPSLLR-HNFLEEFITPIIKVS-KNKEEIPFYSIPEFEE 598
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N +SW IKYYKGLGTSTSKE KEYF ++ H+ F + +D AI LAFSKK
Sbjct: 599 WKSSTQ-NYNSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLAFSKK 657
Query: 676 KIEARKKWLLQFE-----------PGNHLDQKE-KYIKYSDFVNKELILFSMADLQRSIP 723
K+E RK+WL F P ++L K+ Y+ Y+DF+NKEL+LFS +D +RSIP
Sbjct: 658 KVEERKEWLTNFMEDRRQRKLHGLPEDYLYGKDTNYLTYNDFINKELVLFSNSDNERSIP 717
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
S+VDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 718 SLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEASLMMTIINLAQNFV 777
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 778 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRFLYDDNQRV 837
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WYMPIIP VL+NG+EGIGTGWS IPN++ R+ V N+R LL+G+ PM P Y+ F
Sbjct: 838 EPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKNFK 897
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTI++ + Y ++G + ++ TT+ I ELP+R WTQ Y+E LE +++ +
Sbjct: 898 GTIDELGPNQ----YVISGEVSILDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPP 953
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +++Y DTTV F V +SEE + + GL K FKL T ++ ++M LFD G +KKY
Sbjct: 954 LITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKY 1013
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
++P+ IL+EFF +RL +Y RK+ RFIL ++G+IV+ N+ + +
Sbjct: 1014 ESPQDILKEFFELRLRYYGLRKEWLIGMLGAESAKLNNQARFILEKIDGKIVIENKPKKE 1073
Query: 1080 LLLELRQKGFTPFPKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTL 1139
L+ L Q+G+ P K+ + + + G D++YLL+M + L
Sbjct: 1074 LIQVLIQRGYESDPV--KAWKELQNKEEEEGDESGEESAAATGP---DFNYLLNMPLWYL 1128
Query: 1140 TLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEE-----E 1194
T EK L RD ++E++DL+ +P LW +DL A +LD ++ + E +
Sbjct: 1129 TKEKKDELCKQRDNKDKELEDLKHKSPSDLWKEDLAAFVEELDAVEAKQMQDEMAGITGK 1188
Query: 1195 RMKIKGNGNGDAGPKIVAK 1213
+K+KG G G + V K
Sbjct: 1189 PLKVKGGKQG--GKQKVTK 1205
Score = 52 (23.4 bits), Expect = 9.1e-297, Sum P(3) = 9.1e-297
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 1287 KLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
K P D E++ +VP+K++ ++ AA+ K + SD+
Sbjct: 1293 KRNPWSDSESDSESDDFEVPSKRERVVRQAAAKIKPMVNSDSDA 1336
Score = 45 (20.9 bits), Expect = 2.9e-293, Sum P(2) = 2.9e-293
Identities = 31/160 (19%), Positives = 52/160 (32%)
Query: 1173 DLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNAR-- 1230
DL + D + + S+ + + K A PK +APK D +
Sbjct: 1337 DLTSSDEDSEYQENSEGNTDSDTTSKKKPPKAKAVPKEKKGKAPKEKPLPDAVPVRVQDV 1396
Query: 1231 ATEAMGEMDNVTKVVKPKGRAGLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQLASTKLEP 1290
A E+ + V P+ +A L K + A+ K
Sbjct: 1397 AAESASQDPAAPPVSVPRAQAVPKKPAAAKKGSTAKDNQPSIMDILTK---KKAAPKAPR 1453
Query: 1291 SPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
+ + +E AKK P + A K++ + SDS
Sbjct: 1454 AAQREESPPSEATAAVAKKPGPPRGRKATKRLTSSSDSDS 1493
Score = 44 (20.5 bits), Expect = 9.1e-297, Sum P(3) = 9.1e-297
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 1186 KSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARAT 1232
KS+ +E+ + GN +GD P + +R A+K + R T
Sbjct: 1241 KSEKNESDEKQE--GNSSGDKEPSSLKQRL---AQKRKAEQGTKRQT 1282
Score = 44 (20.5 bits), Expect = 3.7e-293, Sum P(2) = 3.7e-293
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 1369 ETKKRGPAKKQQPEASLGQRLLTEM-----LKPAESSPEKKVRKMRASPFN 1414
+ K+ G + + +SL QRL + K + P K ++KM+ +P++
Sbjct: 1248 DEKQEGNSSGDKEPSSLKQRLAQKRKAEQGTKRQTTLPFKPIKKMKRNPWS 1298
Score = 42 (19.8 bits), Expect = 6.0e-293, Sum P(2) = 6.0e-293
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1388 RLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLG 1422
R+ EM AE +KK++ + K+ G+ G
Sbjct: 1223 RVTAEMKAEAEKRIKKKIKSEKNESDEKQEGNSSG 1257
Score = 40 (19.1 bits), Expect = 9.7e-293, Sum P(2) = 9.7e-293
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1278 KLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQ 1319
++ +++ S K E Q G +K K++ KR A Q
Sbjct: 1235 RIKKKIKSEKNESDEKQEGNSSGDKEPSSLKQRLAQKRKAEQ 1276
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 2824 (999.2 bits), Expect = 2.5e-296, Sum P(2) = 2.5e-296
Identities = 598/1203 (49%), Positives = 788/1203 (65%)
Query: 21 TAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLY 80
T+ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R +++VPGLY
Sbjct: 50 TSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLY 108
Query: 81 KIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIF 140
KIFDEILVNAADNKQRD M +K+ ID E ++IS+ N+G G+PV H+ E VYVP LIF
Sbjct: 109 KIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF 168
Query: 141 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKS 200
G LLTSSNYDD+ KK GGRNGYGAKL NIFST+F +ETA + +KQ + NNM K S
Sbjct: 169 GQLLTSSNYDDDEKKIVGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTS 228
Query: 201 EPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGH 260
EP I K EGD++T ++F+PDL+KF M L+ D+V+LM +R DLAG K VKV LNG
Sbjct: 229 EPKI-KHFEGDDYTCITFQPDLSKFKMEKLDKDIVSLMTRRAYDLAGSC-KGVKVMLNGK 286
Query: 261 RVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATI 312
++PV F YVD+Y K ++ HE VNERW++C+TLSE FQQ+SFVN IAT
Sbjct: 287 KLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGFQQISFVNSIATT 346
Query: 313 KGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX---XXXXXXLWVFVNALIDNPAFDSQTK 369
KGG HVDYV +Q +WVFVN LI+NP+FDSQTK
Sbjct: 347 KGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQASNFNHIWVFVNCLIENPSFDSQTK 406
Query: 370 ETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRG 428
E +TL+ SFGSKC+LSE+F K + GI+E++L+W FK L KK K ++G
Sbjct: 407 ENMTLQPKSFGSKCQLSEKFFK-AASNCGIIESILNWVKFKAQTQLNKKCSSVKHSKIKG 465
Query: 429 ISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREAS 488
I KL+DAN AGG++S CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK+LNVREAS
Sbjct: 466 IPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREAS 525
Query: 489 SNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAW 548
Q++ N+EI NI KI+GL+ Y + +SL+ S I+I
Sbjct: 526 HKQIMENAEINNIIKIVGLQYKKSYEDPESLK----------------SLRYGKIMI--- 566
Query: 549 ITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFY 608
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ KN + LSFY
Sbjct: 567 ------MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-KNKQELSFY 618
Query: 609 SMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAI 668
S+P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F + +D AI
Sbjct: 619 SIPEFDEWKKHME-NHKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAI 677
Query: 669 ELAFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNKELILFSMA 716
LAFSKKKI+ RK+WL F H L ++ K++ Y+DF+NKELILFS +
Sbjct: 678 TLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNS 737
Query: 717 DLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTIL 776
D +RSIPS+VDGLKPGQRK+LF FKRN +E KVAQ +G V+E SAYHHGEQ+L TI+
Sbjct: 738 DNERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIV 797
Query: 777 GMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYL 836
+AQ+FVGSNN+NLLQP GQFGTR GGKDAAS RYIFT LSP+ R LFP +L
Sbjct: 798 NLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFL 857
Query: 837 NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMH 896
+D Q++EP WY+PIIP VLVNG+EGIGTGW+ +PNY+ R+IV NVRR+L+G PM
Sbjct: 858 YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPML 917
Query: 897 PWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESII- 954
P Y+ F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+E LE ++
Sbjct: 918 PNYKNFRGTIQELGQNQ----YVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN 973
Query: 955 --DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDS 1012
++ + I +++Y DTTV F V ++EE + + + GL K FKL T+++ ++M LFD
Sbjct: 974 GTEKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDH 1033
Query: 1013 KGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVV 1072
G +KKY+T + IL+EFF +RL +Y RK+ RFIL + G+I +
Sbjct: 1034 MGCLKKYETVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITI 1093
Query: 1073 NNRKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYL 1131
NR + DL+ L Q+G+ P K K + A D D++Y+
Sbjct: 1094 ENRSKRDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDPQNANDDASSASGSTSGPDFNYI 1153
Query: 1132 LSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA 1191
L+M++ +LT EKV+ L+ RD E++DL++ + LW +DL A ++EL+K +A+
Sbjct: 1154 LNMSLWSLTKEKVEELIKHRDSKERELNDLKRKSASDLWKEDLAAF---VEELEKVEAQE 1210
Query: 1192 EEE 1194
E+
Sbjct: 1211 RED 1213
Score = 45 (20.9 bits), Expect = 2.5e-296, Sum P(2) = 2.5e-296
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 1192 EEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPK 1248
+EE ++ G GD A K +KK R A + K VK +
Sbjct: 1283 DEEFGGVQAEGGGDDTVNTAASGTKTPKLKREKKEPGTRVRRAPSSTKSSAKKVKKR 1339
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 2788 (986.5 bits), Expect = 5.0e-296, Sum P(3) = 5.0e-296
Identities = 596/1219 (48%), Positives = 789/1219 (64%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+++E+ R +++VPGLYKIFDE
Sbjct: 30 SVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVGLNC-RDVTFVPGLYKIFDE 88
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRD M +KV ID E++ ISV N+G G+PV H+ E VYVP LIFG LLT
Sbjct: 89 ILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLT 148
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ +T+NMGK E +
Sbjct: 149 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTL- 207
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K +G+++T V+F+PDL+KF MT L+ D+VALM +R D+AG K VKV LNG R+PVK
Sbjct: 208 KHFDGEDYTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAGST-KDVKVFLNGKRLPVK 266
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVD+Y K ++ HE VN RWE+C+TLSE FQQVSFVN IAT KGG H
Sbjct: 267 GFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGFQQVSFVNSIATTKGGRH 326
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYVA+Q +W+FVN+LI+NP FDSQTKE +TL+
Sbjct: 327 VDYVADQIVTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQA 386
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGS C+LSE+F+K GIVE++L+W FK L KK K ++G+ KL+DA
Sbjct: 387 KSFGSTCKLSEKFIKGAVG-CGIVESILNWVKFKAQTQLNKKCSAVKHTKIKGVPKLDDA 445
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AG +NS CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 446 NDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMEN 505
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y + +SL+ S I+I M
Sbjct: 506 AEINNIIKIVGLQYKKNYEDRESLK----------------SLRYGKIMI---------M 540
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ +FL EFITPI+K + KN + + FYS+P++E
Sbjct: 541 TDQDQDGSHIKGLLINFIHHNWPSLLR-HNFLEEFITPIIKVS-KNKEEIPFYSIPEFEE 598
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N +SW IKYYKGLGTSTSKE KEYF ++ H+ F + +D AI LAFSKK
Sbjct: 599 WKSSTQ-NYNSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLAFSKK 657
Query: 676 KIEARKKWLLQFE-----------PGNHLDQKE-KYIKYSDFVNKELILFSMADLQRSIP 723
K+E RK+WL F P ++L K+ Y+ Y+DF+NKEL+LFS +D +RSIP
Sbjct: 658 KVEERKEWLTNFMEDRRQRNVHGLPEDYLYGKDTNYLTYNDFINKELVLFSNSDNERSIP 717
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
S+VDGLKPGQRK+LF FKRN +E K AQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 718 SLVDGLKPGQRKVLFTCFKRNDKREVKGAQLAGSVAEMSSYHHGEASLMMTIINLAQNFV 777
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 778 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRFLYDDNQRV 837
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WYMPIIP VL+NG+EGIGTGWS IPN++ R+ V N+R LL+G+ PM P Y+ F
Sbjct: 838 EPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKNFK 897
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTI++ + Y ++G + ++ TT+ I ELP+R WTQ Y+E LE +++ +
Sbjct: 898 GTIDELGPNQ----YVISGEVSILDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPP 953
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +++Y DTTV F V +SEE + + GL K FKL T ++ ++M LFD G +KKY
Sbjct: 954 LITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKY 1013
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
++P+ IL+EFF +RL +Y RK+ RFIL ++G+IV+ N+ + +
Sbjct: 1014 ESPQDILKEFFELRLRYYGLRKEWLIGMLGAESAKLNNQARFILEKIDGKIVIENKPKKE 1073
Query: 1080 LLLELRQKGFTPFPKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTL 1139
L+ L Q+G+ P K+ + + + G D++YLL+M + L
Sbjct: 1074 LIQVLIQRGYESDPV--KAWKELQNKEEEEGDESGEESAAATGP---DFNYLLNMPLWYL 1128
Query: 1140 TLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEE-----E 1194
T EK L RD ++E++DL+ +P LW +DL A +LD ++ + E +
Sbjct: 1129 TKEKKDELCKQRDNKDKELEDLKHKSPSDLWKEDLAAFVEELDAVEAKQMQDEMAGITGK 1188
Query: 1195 RMKIKGNGNGDAGPKIVAK 1213
+K+KG G G + V K
Sbjct: 1189 PLKVKGGKQG--GKQKVTK 1205
Score = 52 (23.4 bits), Expect = 5.0e-296, Sum P(3) = 5.0e-296
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 1287 KLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
K P D E++ +VP+K++ ++ AA+ K + SD+
Sbjct: 1293 KRNPWSDSESDSESDDFEVPSKRERVVRQAAAKIKPMVNSDSDA 1336
Score = 44 (20.5 bits), Expect = 5.0e-296, Sum P(3) = 5.0e-296
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 1186 KSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARAT 1232
KS+ +E+ + GN +GD P + +R A+K + R T
Sbjct: 1241 KSEKNESDEKQE--GNSSGDKEPSSLKQRL---AQKRKAEQGTKRQT 1282
Score = 44 (20.5 bits), Expect = 2.0e-292, Sum P(2) = 2.0e-292
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 1369 ETKKRGPAKKQQPEASLGQRLLTEM-----LKPAESSPEKKVRKMRASPFN 1414
+ K+ G + + +SL QRL + K + P K ++KM+ +P++
Sbjct: 1248 DEKQEGNSSGDKEPSSLKQRLAQKRKAEQGTKRQTTLPFKPIKKMKRNPWS 1298
Score = 43 (20.2 bits), Expect = 2.6e-292, Sum P(2) = 2.6e-292
Identities = 31/160 (19%), Positives = 51/160 (31%)
Query: 1173 DLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNAR-- 1230
DL + D + + S+ + + K A PK +APK D +
Sbjct: 1337 DLTSSDEDSEYQENSEGNTDSDTTSKKKPPKAKAVPKEKKGKAPKEKPLPDAVPVRVQNV 1396
Query: 1231 ATEAMGEMDNVTKVVKPKGRAGLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQLASTKLEP 1290
A E+ + V P+ +A L K + A+ K
Sbjct: 1397 AAESASQDPAAPPVSVPRAQAVPKKPAAAKKGSTAKDNQPSIMDILTK---KKAAPKAPR 1453
Query: 1291 SPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
+ +E AKK P + A K++ + SDS
Sbjct: 1454 RAQREESPPSEATAAVAKKPGPPRGRKATKRLTSSSDSDS 1493
Score = 42 (19.8 bits), Expect = 3.3e-292, Sum P(2) = 3.3e-292
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1388 RLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLG 1422
R+ EM AE +KK++ + K+ G+ G
Sbjct: 1223 RVTAEMKAEAEKRIKKKIKSEKNESDEKQEGNSSG 1257
Score = 40 (19.1 bits), Expect = 5.4e-292, Sum P(2) = 5.4e-292
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1278 KLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQ 1319
++ +++ S K E Q G +K K++ KR A Q
Sbjct: 1235 RIKKKIKSEKNESDEKQEGNSSGDKEPSSLKQRLAQKRKAEQ 1276
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 2817 (996.7 bits), Expect = 2.8e-295, Sum P(2) = 2.8e-295
Identities = 592/1214 (48%), Positives = 793/1214 (65%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
+IE +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M +R +++VPGLYKIFDE
Sbjct: 38 SIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIG-MNYREVTFVPGLYKIFDE 96
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V ID E++LIS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 97 ILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 156
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ + +NMG+ E +
Sbjct: 157 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELR 216
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
G+++T ++F+PDL+KF M L+ D+VALM +R D+AG K VKV LNG+++PVK
Sbjct: 217 PFN-GEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST-KDVKVFLNGNKLPVK 274
Query: 266 SFAEYVDMYPKS--------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVDMY K + HE+VN RWE+C+T+SE FQQ+SFVN IAT KGG H
Sbjct: 275 GFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRH 334
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLRQ 376
VDY+A+Q +W+FVNALI+NP FDSQTKE +TL+
Sbjct: 335 VDYIADQIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 394
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGS C+LSE+F+K T GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 395 KSFGSTCQLSEKFIKAATG-CGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDA 453
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AGGRNS +CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 454 NDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 513
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y++ SL+ + ++++ M
Sbjct: 514 AEINNIIKIVGLQYKKNYDDEDSLK----TLRYGKIMI---------------------M 548
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ FL EFITPIVK + KN + ++FYS+P++E
Sbjct: 549 TDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFITPIVKVS-KNKQEMAFYSLPEFEE 606
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N W +KYYKGLGTSTSKE KEYF N+ H+ F + +D AI LAFSKK
Sbjct: 607 WKSSTP-NHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKK 665
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
+I+ RK+WL F P ++L Q Y+ Y+DF+NKELILFS +D +RSIP
Sbjct: 666 QIDDRKEWLTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIP 725
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
SMVDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 726 SMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFV 785
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 786 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLKFLYDDNQRV 845
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++V N+RRL++GE PM P Y+ F
Sbjct: 846 EPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKNFR 905
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTIE+ A + Y ++G + +N TT+ I ELP+R WTQ Y+E LE +++ +
Sbjct: 906 GTIEELAPNQ----YVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPP 961
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +R+Y DTTV F V ++EE + ++ GL K FKL T+++ ++M LFD G +KKY
Sbjct: 962 LITDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKY 1021
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
DT IL +FF +RL++Y RK+ RFIL ++G+I++ N+ + +
Sbjct: 1022 DTVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKE 1081
Query: 1080 LLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQSID--YDYLLSMA 1135
L+ L Q+G+ P K K + V + + V+ ++YLL M
Sbjct: 1082 LIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMP 1141
Query: 1136 IGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEER 1195
+ LT EK L R++ +E++ L++ +P LW +DL +L+ ++ + +EE+
Sbjct: 1142 LWYLTKEKKDELCKLRNEKEQELETLKRKSPTDLWKEDLATFVEELEAVETKEK--QEEQ 1199
Query: 1196 MKIKGNGNGDAGPK 1209
+ + G G G K
Sbjct: 1200 IGLPGKGGKGKGKK 1213
Score = 1090 (388.8 bits), Expect = 4.0e-112, Sum P(2) = 4.0e-112
Identities = 255/673 (37%), Positives = 371/673 (55%)
Query: 678 EARKKWLLQFEPGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ R++ LL P ++L Q Y+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+
Sbjct: 680 DRRQRKLLGL-PEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKV 738
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQ
Sbjct: 739 LFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQ 798
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++EP WY+PIIP VL
Sbjct: 799 FGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLKFLYDDNQRVEPEWYIPIIPMVL 858
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGV 916
+NG+EGIGTGWS IPN++ R++V N+RRL++GE PM P Y+ F GTIE+ A +
Sbjct: 859 INGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKNFRGTIEELAPNQ--- 915
Query: 917 TYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTT 972
Y ++G + +N TT+ I ELP+R WTQ Y+E LE +++ + I +R+Y DTT
Sbjct: 916 -YVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTT 974
Query: 973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHI 1032
V F V ++EE + ++ GL K FKL T+++ ++M LFD G +KKYDT IL +FF +
Sbjct: 975 VKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFEL 1034
Query: 1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
RL++Y RK+ RFIL ++G+I++ N+ + +L+ L Q+G+
Sbjct: 1035 RLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSD 1094
Query: 1093 P-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQSID--YDYLLSMAIGTLTLEKVQGLL 1148
P K K + V + + V+ ++YLL M + LT EK L
Sbjct: 1095 PVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMPLWYLTKEKKDELC 1154
Query: 1149 ADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGP 1208
R++ +E++ L++ +P LW +DL +L+ ++ + +EE++ + G G G
Sbjct: 1155 KLRNEKEQELETLKRKSPTDLWKEDLATFVEELEAVETKEK--QEEQIGLPGKGGKGKGK 1212
Query: 1209 KI-VAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLXXXXXXXXXXXXXX 1267
K +A+ P K +A E N K+
Sbjct: 1213 KTQMAEVLPSPCGKRVIPRVTIEM-KAEAEKKNKKKIKNENTEGSPQEESIEIEGLKQRL 1271
Query: 1268 XXXXXXQRLAKLNEQLA--------STKLEPSPDQSGVMETEK--VQVPAKKKEPSKRTA 1317
+ K +Q K P D M + + VP ++ EP +
Sbjct: 1272 EKKQKREPGTKTKKQTTLPFKPIKKGKKRNPWSDSESDMSSNESNFDVPPREVEPRRAAT 1331
Query: 1318 AQKKVVTVETSDS 1330
K V ++ DS
Sbjct: 1332 KTKFTVDLDLDDS 1344
Score = 42 (19.8 bits), Expect = 2.8e-295, Sum P(2) = 2.8e-295
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 1285 STKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVET 1327
S L P + ETE V KKK K+ A + + T T
Sbjct: 1398 SVPLSPGSTADFLAETEIVNPLPKKKVDVKKIAPKSQSSTSTT 1440
Score = 40 (19.1 bits), Expect = 4.6e-295, Sum P(2) = 4.6e-295
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1391 TEMLKPAESSPEKKVRKMRASPFNKKSGSMLG 1422
TE++ P P+KKV + +P ++ S S G
Sbjct: 1413 TEIVNPL---PKKKVDVKKIAPKSQSSTSTTG 1441
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 2816 (996.3 bits), Expect = 3.6e-295, Sum P(2) = 3.6e-295
Identities = 593/1212 (48%), Positives = 792/1212 (65%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
+IE +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ + +R +++VPGLYKIFDE
Sbjct: 28 SIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDE 86
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V ID E++LIS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 87 ILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 146
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST F +ETA + K +KQ + +NMG+ + +
Sbjct: 147 SSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDMEL- 205
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K G+++T ++F+PDL+KF M L+ D+VALM +R D+AG K VKV LNG+++PVK
Sbjct: 206 KPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST-KDVKVFLNGNKLPVK 264
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVDMY K ++ HE+VN RWE+C+T+SE FQQ+SFVN IAT KGG H
Sbjct: 265 GFRSYVDMYLKDKLDETGNALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRH 324
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYVA+Q +W+FVNALI+NP FDSQTKE +TL+
Sbjct: 325 VDYVADQIVSKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 384
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGS C+LSE+F+K GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 385 KSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDA 443
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AG RNS +CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 444 NDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 503
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y + SL+ + ++++ M
Sbjct: 504 AEINNIIKIVGLQYKKNYEDEDSLK----TLRYGKIMI---------------------M 538
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ FL EFITPIVK + KN + L+FYS+P++E
Sbjct: 539 TDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFITPIVKVS-KNKQELAFYSLPEFEE 596
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N W +KYYKGLGTSTSKE KEYF ++ H+ F + +D AI LAFSKK
Sbjct: 597 WKSSTP-NHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKK 655
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
+++ RK+WL F P ++L Q Y+ Y+DF+NKELILFS +D +RSIP
Sbjct: 656 QVDDRKEWLTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIP 715
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
SMVDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 716 SMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFV 775
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+TR LFP +L +D Q++
Sbjct: 776 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPPKDDHTLKFLYDDNQRV 835
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ F
Sbjct: 836 EPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEEPLPMLPSYKNFK 895
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTIE+ AS + Y + G + +N TT+ I ELPIR WTQ Y+E LE +++ +
Sbjct: 896 GTIEELASNQ----YVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPP 951
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +R+Y DTTV F + ++EE + ++ GL K FKL T+++ ++M LFD G +KKY
Sbjct: 952 LITDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKY 1011
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
DT IL++FF +RL++Y RK+ RFIL ++G+I++ N+ + +
Sbjct: 1012 DTVLDILKDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKE 1071
Query: 1080 LLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGT 1138
L+ L Q+G+ P K K + V + V ++YLL M +
Sbjct: 1072 LIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSV-AESGPTFNYLLDMPLWY 1130
Query: 1139 LTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEERMK 1197
LT EK L R++ +E++ L+ +P LW +DL ++EL+ +A+ ++E++
Sbjct: 1131 LTKEKKDELCKQRNEKEQELNTLKNKSPSDLWKEDLAVF---IEELEVVEAKEKQDEQVG 1187
Query: 1198 IKGNGNGDAGPK 1209
+ G G G K
Sbjct: 1188 LPGKGGKAKGKK 1199
Score = 1118 (398.6 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 262/668 (39%), Positives = 379/668 (56%)
Query: 678 EARKKWLLQFEPGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ R++ LL P ++L Q Y+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+
Sbjct: 670 DRRQRKLLGL-PEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKV 728
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQ
Sbjct: 729 LFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQ 788
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FGTR GGKD+AS RYIFT LSP+TR LFP +L +D Q++EP WY+PIIP VL
Sbjct: 789 FGTRLHGGKDSASPRYIFTMLSPLTRLLFPPKDDHTLKFLYDDNQRVEPEWYIPIIPMVL 848
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGV 916
+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ F GTIE+ AS +
Sbjct: 849 INGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEEPLPMLPSYKNFKGTIEELASNQ--- 905
Query: 917 TYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTT 972
Y + G + +N TT+ I ELPIR WTQ Y+E LE +++ + I +R+Y DTT
Sbjct: 906 -YVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTT 964
Query: 973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHI 1032
V F + ++EE + ++ GL K FKL T+++ ++M LFD G +KKYDT IL++FF +
Sbjct: 965 VKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFEL 1024
Query: 1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
RL++Y RK+ RFIL ++G+I++ N+ + +L+ L Q+G+
Sbjct: 1025 RLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSD 1084
Query: 1093 P-KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADR 1151
P K K + V + V ++YLL M + LT EK L R
Sbjct: 1085 PVKAWKEAQQKVPDEEENEESDNENSDSV-AESGPTFNYLLDMPLWYLTKEKKDELCKQR 1143
Query: 1152 DKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEERMKIKGNGNGDAGPKI 1210
++ +E++ L+ +P LW +DL ++EL+ +A+ ++E++ + G G G K
Sbjct: 1144 NEKEQELNTLKNKSPSDLWKEDLAVF---IEELEVVEAKEKQDEQVGLPGKGGKAKGKK- 1199
Query: 1211 VAKRAPKNARKNDKKSNNARATEAMGEMDN-VTKVVKPKGRAGLXXXXXXXXXXXXXXXX 1269
A+ + + K+ E E + + K +K + G
Sbjct: 1200 -AQMSEVLPSPHGKRVIPQVTMEMKAEAEKKIRKKIKSENVEGTPTENGLELGSLKQRIE 1258
Query: 1270 XXXXQR---LAKLNEQLA------STKLEPSPDQSGVMETEK--VQVPAKKKEPSKRTAA 1318
+ + K LA K P D M + + V VP ++K+P R AA
Sbjct: 1259 KKQKKEPGAMTKKQTTLAFKPIKKGKKRNPWSDSESDMSSNESNVDVPPREKDP--RRAA 1316
Query: 1319 QKKVVTVE 1326
K T++
Sbjct: 1317 TKAKFTMD 1324
Score = 42 (19.8 bits), Expect = 3.6e-295, Sum P(2) = 3.6e-295
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 1386 GQRLLTEMLKPAESSPEKKVRK 1407
G+R++ ++ ++ EKK+RK
Sbjct: 1211 GKRVIPQVTMEMKAEAEKKIRK 1232
Score = 42 (19.8 bits), Expect = 3.6e-295, Sum P(2) = 3.6e-295
Identities = 20/96 (20%), Positives = 38/96 (39%)
Query: 1154 LNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAK 1213
L + + L+ ++ +++ VK + RA + K N K V
Sbjct: 1394 LPADTEQLKPSSKQTVAVKKTATKSQSSTSTAGTKKRAVPKGSKSDSALNAHGPEKPVPA 1453
Query: 1214 RAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKG 1249
+A KN+RK + S++ ++ + V K KG
Sbjct: 1454 KA-KNSRKRKQSSSDDSDSDFEKVVSKVAASKKSKG 1488
Score = 38 (18.4 bits), Expect = 9.5e-295, Sum P(2) = 9.5e-295
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 1280 NEQLASTKLEPSPDQSGV-METEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
+++ S P P + + +TE++ K SK+T A KK T S +
Sbjct: 1377 SDEKDSVPASPGPPAADLPADTEQL------KPSSKQTVAVKKTATKSQSST 1422
Score = 37 (18.1 bits), Expect = 1.2e-294, Sum P(2) = 1.2e-294
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1278 KLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSD 1329
K+ ++A++K +Q ++ ++ VP K S R A+K + +E SD
Sbjct: 1475 KVVSKVAASKKSKGENQDFRVDLDETMVPRAK---SGR--AKKPIKYLEESD 1521
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 2809 (993.9 bits), Expect = 2.0e-294, Sum P(2) = 2.0e-294
Identities = 593/1215 (48%), Positives = 793/1215 (65%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
+IE +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M +R +++VPGLYKIFDE
Sbjct: 29 SIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIG-MNYREVTFVPGLYKIFDE 87
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V ID E++LIS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 88 ILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 147
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ + +NMG+ E +
Sbjct: 148 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELR 207
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
G+++T ++F+PDL+KF M L+ D+VALM +R D+AG K VKV LNG+++PVK
Sbjct: 208 PFN-GEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST-KDVKVFLNGNKLPVK 265
Query: 266 SFAEYVDMYPKS--------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVDMY K + HE+VN RWE+C+T+SE FQQ+SFVN IAT KGG H
Sbjct: 266 GFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRH 325
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLRQ 376
VDY+A+Q +W+FVNALI+NP FDSQTKE +TL+
Sbjct: 326 VDYIADQIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 385
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGS C+LSE+F+K T GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 386 KSFGSTCQLSEKFIKAATG-CGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDA 444
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AGGRNS +CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 445 NDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 504
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y++ SL+ + ++++ M
Sbjct: 505 AEINNIIKIVGLQYKKNYDDEDSLK----TLRYGKIMI---------------------M 539
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ FL EFITPIVK + KN + ++FYS+P++E
Sbjct: 540 TDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFITPIVKVS-KNKQEMAFYSLPEFEE 597
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N W +KYYKGLGTSTSKE KEYF N+ H+ F + +D AI LAFSKK
Sbjct: 598 WKSSTP-NHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKK 656
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
+I+ RK+WL F P ++L Q Y+ Y+DF+NKELILFS +D +RSIP
Sbjct: 657 QIDDRKEWLTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIP 716
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
SMVDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 717 SMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFV 776
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 777 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLKFLYDDNQRV 836
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++V N+RRL++GE PM P Y+ F
Sbjct: 837 EPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKNFR 896
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTIE+ A + Y ++G + +N TT+ I ELP+R WTQ Y+E LE +++ +
Sbjct: 897 GTIEELAPNQ----YVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPP 952
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +R+Y DTTV F V ++EE + ++ GL K FKL T+++ ++M LFD G +KKY
Sbjct: 953 LITDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKY 1012
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIV-VNNRKRT 1078
DT IL +FF +RL++Y RK+ RFIL ++G+I+ V N+ +
Sbjct: 1013 DTVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIVENKPKK 1072
Query: 1079 DLLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQSID--YDYLLSM 1134
+L+ L Q+G+ P K K + V + + V+ ++YLL M
Sbjct: 1073 ELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDM 1132
Query: 1135 AIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE 1194
+ LT EK L R++ +E++ L++ +P LW +DL +L+ ++ + +EE
Sbjct: 1133 PLWYLTKEKKDELCKLRNEKEQELETLKRKSPTDLWKEDLATFVEELEAVETKEK--QEE 1190
Query: 1195 RMKIKGNGNGDAGPK 1209
++ + G G G K
Sbjct: 1191 QIGLPGKGGKGKGKK 1205
Score = 1002 (357.8 bits), Expect = 5.9e-102, Sum P(2) = 5.9e-102
Identities = 242/672 (36%), Positives = 363/672 (54%)
Query: 678 EARKKWLLQFEPGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ R++ LL P ++L Q Y+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+
Sbjct: 671 DRRQRKLLGL-PEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKV 729
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQ
Sbjct: 730 LFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQ 789
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++EP WY+PIIP VL
Sbjct: 790 FGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLKFLYDDNQRVEPEWYIPIIPMVL 849
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKE--- 913
+NG+EGIGTGWS IPN++ R++V N+RRL++GE PM P Y+ F GTIE+ A +
Sbjct: 850 INGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKNFRGTIEELAPNQYVI 909
Query: 914 AGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTV 973
+G + E++E +R + + + E + + ++ I +R+Y DTTV
Sbjct: 910 SGEVAILNSTTIEISELPVRTWT---QTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTV 966
Query: 974 DFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIR 1033
F V ++EE + ++ GL K FKL T+++ ++M LFD G +KKYDT IL +FF +R
Sbjct: 967 KFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELR 1026
Query: 1034 LEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIV-VNNRKRTDLLLELRQKGFTPF 1092
L++Y RK+ RFIL ++G+I+ V N+ + +L+ L Q+G+
Sbjct: 1027 LKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIVENKPKKELIKVLIQRGYDSD 1086
Query: 1093 P-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQSID--YDYLLSMAIGTLTLEKVQGLL 1148
P K K + V + + V+ ++YLL M + LT EK L
Sbjct: 1087 PVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMPLWYLTKEKKDELC 1146
Query: 1149 ADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGP 1208
R++ +E++ L++ +P LW +DL +L+ ++ + +EE++ + G G G
Sbjct: 1147 KLRNEKEQELETLKRKSPTDLWKEDLATFVEELEAVETKEK--QEEQIGLPGKGGKGKGK 1204
Query: 1209 KI-VAKRAPKNARKN-------DKKSNNARATEAMGEMDNVTKVVKPKGRAGLXXXXXXX 1260
K +A+ P K + K+ + + +G+ +N + +
Sbjct: 1205 KTQMAEVLPSPCGKRVIPRVTIEMKAEAEKKIKYLGKNENTEGSPQEESIEIEGLKQRLE 1264
Query: 1261 XXXXXXXXXXXXXQRLAKLNEQLASTKLEPSPDQSGVMETEK--VQVPAKKKEPSKRTAA 1318
Q K P D M + + VP ++ EP +
Sbjct: 1265 KKQKREPGTKTKKQTTLPFKPIKKGKKRNPWSDSESDMSSNESNFDVPPREVEPRRAATK 1324
Query: 1319 QKKVVTVETSDS 1330
K V ++ DS
Sbjct: 1325 TKFTVDLDLDDS 1336
Score = 42 (19.8 bits), Expect = 2.0e-294, Sum P(2) = 2.0e-294
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 1285 STKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVET 1327
S L P + ETE V KKK K+ A + + T T
Sbjct: 1390 SVPLSPGSTADFLAETEIVNPLPKKKVDVKKIAPKSQSSTSTT 1432
Score = 40 (19.1 bits), Expect = 3.2e-294, Sum P(2) = 3.2e-294
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1391 TEMLKPAESSPEKKVRKMRASPFNKKSGSMLG 1422
TE++ P P+KKV + +P ++ S S G
Sbjct: 1405 TEIVNPL---PKKKVDVKKIAPKSQSSTSTTG 1433
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 2804 (992.1 bits), Expect = 4.1e-294, Sum P(2) = 4.1e-294
Identities = 599/1241 (48%), Positives = 800/1241 (64%)
Query: 8 PLTTSNNANVVGPTAPNK------TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIY 61
PL N V T N+ +IE +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y
Sbjct: 5 PLQPVNENMQVNKTKKNEEAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVY 64
Query: 62 EEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGD 121
+E+ + +R +++VPGLYKIFDEILVNAADNKQRDPKM ++V ID E++LIS+ N+G
Sbjct: 65 DEDIG-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGK 123
Query: 122 GVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETAD 181
G+PV H+ E +YVP LIFG LLTSSNYDD KK TGGRNGYGAKL NIFST+F +ETA
Sbjct: 124 GIPVVEHKVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETAS 183
Query: 182 GKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKR 241
+ K +KQ + +NMG+ E + K G+++T ++F PDL+KF M L+ D+VALM +R
Sbjct: 184 REYKKMFKQTWMDNMGRAGEMEL-KPFNGEDYTCITFHPDLSKFKMQSLDKDIVALMVRR 242
Query: 242 VVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKS--------VTRFHERVNERWEICV 293
D+AG K VKV LNG+++PVK F YVD+Y K + HE+VN RWE+C+
Sbjct: 243 AYDIAGST-KDVKVFLNGNKLPVKGFRSYVDLYLKDKVDETGNPLKIIHEQVNHRWEVCL 301
Query: 294 TLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LW 352
T+SE FQQ+SFVN IAT KGG HVDYVA+Q +W
Sbjct: 302 TMSEKGFQQISFVNSIATSKGGRHVDYVADQIVAKLVDVVKKKNKGGVAVKAHQVKNHMW 361
Query: 353 VFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQS 412
+FVNALI+NP FDSQTKE +TL+ SFGS C+LSE+F+K GIVE++L+W FK
Sbjct: 362 IFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQ 420
Query: 413 KDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR 471
L KK K ++GI KL+DAN AGGRNS +CTLILTEGDSAK LA++GL VVGRD+
Sbjct: 421 VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK 480
Query: 472 FGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQV 531
+GVFPLRGK+LNVREAS Q++ N+EI NI KI+GL+ Y + SL+ + ++
Sbjct: 481 YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLK----TLRYGKI 536
Query: 532 LLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFI 591
++ M QD DGSHIKGLLINFIH WPSLL+ FL EFI
Sbjct: 537 MI---------------------MTDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFI 574
Query: 592 TPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNIT 651
TPIVK + KN + ++FYS+P++E WK S N W +KYYKGLGTSTSKE KEYF ++
Sbjct: 575 TPIVKVS-KNKQEMAFYSLPEFEEWKSSTP-NHKKWKVKYYKGLGTSTSKEAKEYFADMK 632
Query: 652 LHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFE-----------PGNHL-DQKEKY 699
H+ F + +D AI LAFSKK+I+ RK+WL F P ++L Q Y
Sbjct: 633 RHRIQFKYSGPEDDAAISLAFSKKQIDDRKEWLTHFMEDRRQRKLLGLPEDYLYGQTTTY 692
Query: 700 IKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVS 759
+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+LF FKRN +E KVAQ +G V+
Sbjct: 693 LTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVA 752
Query: 760 EHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSP 819
E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP
Sbjct: 753 EMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSP 812
Query: 820 ITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDI 879
+ R LFP +L +D Q++EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++
Sbjct: 813 LARLLFPPKDDHTLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREV 872
Query: 880 VANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPI 939
V N+R L++GE PM P Y+ F GTIE+ A + Y ++G + +N TT+ I ELPI
Sbjct: 873 VNNIRLLMDGEEPLPMLPSYKNFKGTIEELAPNQ----YVISGEVAILNSTTIEISELPI 928
Query: 940 RRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKK 995
R WTQ Y+E LE +++ + I +R+Y DTTV F V ++EE + ++ GL K
Sbjct: 929 RTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKV 988
Query: 996 FKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXX 1055
FKL T+++ ++M LFD G +KKYDT IL +FF +RL++Y RK+
Sbjct: 989 FKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKL 1048
Query: 1056 XXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP-KNSKSIEAVVAGA-----TDX 1109
RFIL ++G+I++ N+ + +L+ L Q+G+ P K K + V +D
Sbjct: 1049 NNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDN 1108
Query: 1110 XXXXXXXXXVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESL 1169
V + + ++YLL M + LT EK L R++ +E++ L++ +P L
Sbjct: 1109 EKEADKSDSVADSGPT--FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDL 1166
Query: 1170 WVKDLDALDMQLDELDKSDARA-EEERMKIKGNGNGDAGPK 1209
W +DL A ++EL+ +A+ ++E++ + G G G K
Sbjct: 1167 WKEDLAAF---IEELEAVEAKEKQDEQIGLPGKGGKAKGKK 1204
Score = 1101 (392.6 bits), Expect = 6.9e-114, Sum P(2) = 6.9e-114
Identities = 266/681 (39%), Positives = 384/681 (56%)
Query: 678 EARKKWLLQFEPGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ R++ LL P ++L Q Y+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+
Sbjct: 671 DRRQRKLLGL-PEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKV 729
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQ
Sbjct: 730 LFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQ 789
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++EP WY+PIIP VL
Sbjct: 790 FGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLKFLYDDNQRVEPEWYIPIIPMVL 849
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGV 916
+NG+EGIGTGWS IPN++ R++V N+R L++GE PM P Y+ F GTIE+ A +
Sbjct: 850 INGAEGIGTGWSCKIPNFDVREVVNNIRLLMDGEEPLPMLPSYKNFKGTIEELAPNQ--- 906
Query: 917 TYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTT 972
Y ++G + +N TT+ I ELPIR WTQ Y+E LE +++ + I +R+Y DTT
Sbjct: 907 -YVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTT 965
Query: 973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHI 1032
V F V ++EE + ++ GL K FKL T+++ ++M LFD G +KKYDT IL +FF +
Sbjct: 966 VKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFEL 1025
Query: 1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
RL++Y RK+ RFIL ++G+I++ N+ + +L+ L Q+G+
Sbjct: 1026 RLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSD 1085
Query: 1093 P-KNSKSIEAVVAGA-----TDXXXXXXXXXXVVNGVQSIDYDYLLSMAIGTLTLEKVQG 1146
P K K + V +D V + + ++YLL M + LT EK
Sbjct: 1086 PVKAWKEAQQKVPDEEENEESDNEKEADKSDSVADSGPT--FNYLLDMPLWYLTKEKKDE 1143
Query: 1147 LLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEERMKIKGNGNGD 1205
L R++ +E++ L++ +P LW +DL A ++EL+ +A+ ++E++ + G G
Sbjct: 1144 LCKLRNEKEQELETLKRKSPSDLWKEDLAAF---IEELEAVEAKEKQDEQIGLPGKGGKA 1200
Query: 1206 AG---------PKIVAKRA-PK-------NARKNDKKSNNARATEAMGEMDNVTKVVKPK 1248
G P KR P+ A K KK + TE + D + +V K
Sbjct: 1201 KGKKTQMAEVLPSPCGKRVIPRVTVEMKAEAEKKIKKKIKSENTEGSPQEDGM-EVEGLK 1259
Query: 1249 GRAGLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQLASTKLEPSPDQSGVMETEKVQVPAK 1308
R + AK + ++ + S D+S VP +
Sbjct: 1260 QRLEKKQKREPGTKTKKQTTLPFKPIKKAKKRNPWSDSESDISSDESNF------NVPPR 1313
Query: 1309 KKEPSKRTAAQKKVVTVETSD 1329
+KEP +R AA+ K SD
Sbjct: 1314 EKEP-RRAAAKTKFTVDLDSD 1333
Score = 44 (20.5 bits), Expect = 4.1e-294, Sum P(2) = 4.1e-294
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 1284 ASTKLEPSPDQSGVME----TEKVQVPAKKKEPSKRTAAQKKVVTVET 1327
A + PSP S V + TE ++ +KK K+TAA+ + T T
Sbjct: 1386 AKDNVPPSPS-SPVADFPAVTETIKPVSKKNVTVKKTAAKSQSSTSTT 1432
Score = 37 (18.1 bits), Expect = 2.3e-293, Sum P(2) = 2.3e-293
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 1371 KKRGPAKKQQPE---ASLGQRLLTEMLKPAESSPEKKVRK 1407
K +G K Q E + G+R++ + ++ EKK++K
Sbjct: 1199 KAKGK-KTQMAEVLPSPCGKRVIPRVTVEMKAEAEKKIKK 1237
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 2796 (989.3 bits), Expect = 6.0e-293, Sum P(2) = 6.0e-293
Identities = 602/1272 (47%), Positives = 812/1272 (63%)
Query: 12 SNNANVVGPTAPNK-TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIH 70
+ + VV + K ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+++EE +
Sbjct: 34 AGKSEVVKKESSKKMSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEEIGMNL- 92
Query: 71 RTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQE 130
R IS+VPGLYKIFDEILVNAADNKQRD M +K+ ID E + ISV N+G G+PV H++
Sbjct: 93 REISFVPGLYKIFDEILVNAADNKQRDKNMTTIKITIDPESNTISVWNNGKGIPVVEHKD 152
Query: 131 EGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQ 190
E +YVP LIFGHLLTSSNYDDN KK TGGRNGYGAKL NIFS +F +ETA + + +KQ
Sbjct: 153 EKMYVPALIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSLKFTVETACKEYKRSFKQ 212
Query: 191 VFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAG-CL 249
+T NMGK +E I K +G+++T V+F+PDLAKFNM L+ D+VAL+ +R D+AG C
Sbjct: 213 TWTENMGKSNEAKI-KYFDGEDFTCVTFQPDLAKFNMEKLDKDIVALLTRRAYDVAGSCR 271
Query: 250 GKSVKVELNGHRVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQ 301
G VKV LNG ++PV SF YVD Y K ++ +E VNERWE+C+T+SE FQ
Sbjct: 272 G--VKVILNGKKLPVNSFRSYVDFYVKDKLDETGVALKVVNETVNERWEVCLTMSEKGFQ 329
Query: 302 QVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALID 360
Q+SFVN IAT KGG H+DY+ +Q LWVFVNALI+
Sbjct: 330 QISFVNSIATTKGGRHIDYIVDQIVGKLIEVVKKKNKAGVSVKPFQVKNHLWVFVNALIE 389
Query: 361 NPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKND 419
NP FDSQTKE +TL+ SFGSKC LSE+F++ T GIVE++L+W FK L KK
Sbjct: 390 NPTFDSQTKENMTLQTKSFGSKCALSEKFIRAAT-NCGIVESILNWVKFKAQTQLNKKCS 448
Query: 420 GTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRG 479
K ++GI KL+DAN AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRG
Sbjct: 449 SVKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRG 508
Query: 480 KLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFL 539
K+LNVREA+ Q++ N+EI NI KILGL+ Y++ +SL+ S
Sbjct: 509 KILNVREATHKQIMENAEINNIIKILGLQYKKSYDDPESLK----------------SLR 552
Query: 540 LWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATN 599
I+I M QD DGSHIKGLLINF H WPSLLK +FL EFITPIVKA+
Sbjct: 553 YGRIMI---------MTDQDQDGSHIKGLLINFFHHNWPSLLK-HTFLEEFITPIVKAS- 601
Query: 600 KNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVW 659
KN + +SFYS+P++E WK+ + +W IKYYKGLGTSTSKE KEYF ++ H+ F +
Sbjct: 602 KNKQEVSFYSIPEFEEWKKHTE-SYKTWHIKYYKGLGTSTSKEAKEYFSDMERHRIMFKY 660
Query: 660 EDDQDGEAIELAFSKKKIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVN 707
+D AI LAFSKKK + RK+WL F P +L +++ Y+DF+N
Sbjct: 661 NGTEDDAAITLAFSKKKTDDRKEWLTNFMEDRRQRRMHGLPEQYLYGTSTRHLSYNDFIN 720
Query: 708 KELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHG 767
KELILFS +D +RSIPS+VDGLKPGQRK+LF KRN +E KVAQ +G V+E SAYHHG
Sbjct: 721 KELILFSNSDNERSIPSLVDGLKPGQRKVLFTCVKRNDKREVKVAQLAGSVAEMSAYHHG 780
Query: 768 EQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPX 827
EQ+L TI+ +AQ+FVGSNN+N+LQP GQFGTR GGKDAAS RYIFT LSP+ + LFP
Sbjct: 781 EQALMMTIVNLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPA 840
Query: 828 XXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL 887
+L +D Q++EP WY+PIIP VLVNG+EGIGTGW+ IPNY+PR+IV N+ R+L
Sbjct: 841 VDSSLLKFLYDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRML 900
Query: 888 NGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYR 947
N + PM P Y+ F GTI + + Y V+G + +++ T+ I ELP+R WTQ Y+
Sbjct: 901 NHQDPLPMLPSYKNFKGTIHELGQNQ----YLVSGEVSVLDKNTIEISELPVRTWTQAYK 956
Query: 948 E-FLESII---DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTIS 1003
E LE ++ D+ I +++Y DTTV F V ++EE + + + GL K FKL ++++
Sbjct: 957 ESVLEPMLQGTDKTPPLISDYKEYHTDTTVKFVVRMTEEKLAQAEAAGLHKVFKLQSSLT 1016
Query: 1004 TSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFIL 1063
++M LFD G +K+Y++ ++IL+EFF +RL +Y+ RK RF+L
Sbjct: 1017 CNSMVLFDHMGCMKRYESVQEILKEFFELRLHYYKLRKDWLVGSLGAESAKLSNQARFVL 1076
Query: 1064 GVVNGEIVVNNRKRTDLLLELRQKGFTPFP------KNSKSIEAVVAGATDXXXXXXXXX 1117
+ G++ + N+ + DL+ L Q+G+ P KS+E G D
Sbjct: 1077 EKIEGKLSIENKSKRDLIRMLVQRGYESDPVAAWNKAQEKSLEEEDGGGNDSDSSVDSGS 1136
Query: 1118 XVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDAL 1177
+G +++Y+L+M + LT EKV+ LL RD E+++L+ T E+LW +DL
Sbjct: 1137 F--SGP---NFNYILNMPLWCLTKEKVEELLKQRDLKKAELNELQSKTSENLWREDLAVF 1191
Query: 1178 DMQLDELDKSDARAEEERMKIKGNGNGDAG-PKIVAKRAPKNARKNDKKSNNARATEAMG 1236
+LD +++ + + +K G G PK+ + + + + T AM
Sbjct: 1192 IEELDRVEEQEKESVNLGKAVK-LVKGKVGKPKVKKMQLEETLPSPFGRRVEPQITLAM- 1249
Query: 1237 EMDNVTKVVKPK 1248
+ D K+ K K
Sbjct: 1250 KADASKKLTKKK 1261
Score = 41 (19.5 bits), Expect = 6.0e-293, Sum P(2) = 6.0e-293
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 1372 KRGPAKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGS 1419
K+ PA K + +R + L+ E SP KK K S KK+ S
Sbjct: 1523 KKPPASKGSGKGRSKKRKQSS-LEEDEYSPMKKHGKSATSRKPKKAAS 1569
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 2793 (988.2 bits), Expect = 2.0e-292, Sum P(2) = 2.0e-292
Identities = 591/1214 (48%), Positives = 792/1214 (65%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ + +R +++VPGLYKIFDE
Sbjct: 28 SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDE 86
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V + ++LIS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 87 ILVNAADNKQRDPKMSCIRVTM-MRNNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 145
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ + +NMG+ + +
Sbjct: 146 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMEL- 204
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K G+++T ++F+PDL+KF M L+ D+VALM +R D+AG K VKV LNG+R+PVK
Sbjct: 205 KPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST-KDVKVFLNGNRLPVK 263
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVDMY K ++ HE+VN RWE+C+T+SE FQQ+SFVN IAT KGG H
Sbjct: 264 GFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRH 323
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYVA+Q +W+F NA+I+NP FDSQTKE +TL+
Sbjct: 324 VDYVADQIVSKLVDVVKKKNKGGVAVKADQVKNHMWIFGNAVIENPTFDSQTKENMTLQA 383
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
SFGS C+LSE+F+K GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 384 KSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDA 442
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AG RNS +CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 443 NDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 502
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y + SL+ + ++++ M
Sbjct: 503 AEINNIIKIVGLQYKKNYEDEDSLK----TLRYGKIMI---------------------M 537
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ FL EFITPIVK + KN + ++FYS+P++E
Sbjct: 538 TDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFITPIVKVS-KNKQEIAFYSLPEFEE 595
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N W +KYYKGLGTSTSKE KEYF N+ H+ F + +D AI LAFSKK
Sbjct: 596 WK-STNPNHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKK 654
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
+++ RK+WL F P ++L Q Y+ Y+DF+NKELILFS +D +RSIP
Sbjct: 655 QVDDRKEWLTNFMEDRRQRKLLGLPEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIP 714
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
SMVDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 715 SMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFV 774
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 775 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYDDNQRV 834
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ +
Sbjct: 835 EPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKNYK 894
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTIE+ AS + Y + G + +N TT+ I ELPIR WTQ Y+E LE +++ +
Sbjct: 895 GTIEELASNQ----YVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPP 950
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +R+Y DTTV F + ++EE + ++ GL K FKL T+++ ++M LFD G +KKY
Sbjct: 951 LITDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKY 1010
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
DT IL +FF +RL++Y RK+ RFIL ++G+IV+ N+ + +
Sbjct: 1011 DTVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKE 1070
Query: 1080 LLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQS-IDYDYLLSMAI 1136
L+ L Q+G+ P K K + V + + +S ++YLL M +
Sbjct: 1071 LIKVLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESTSPAAESGPTFNYLLDMPL 1130
Query: 1137 GTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEER 1195
LT EK L RD+ +E++ L+K TP LW +DL A ++EL+ +A+ ++E+
Sbjct: 1131 WYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAF---VEELEVVEAKEKQDEQ 1187
Query: 1196 MKIKGNGNGDAGPK 1209
+ + G G G K
Sbjct: 1188 VGLPGKGVKAKGKK 1201
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 267/669 (39%), Positives = 378/669 (56%)
Query: 678 EARKKWLLQFEPGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ R++ LL P ++L Q Y+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+
Sbjct: 669 DRRQRKLLGL-PEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKV 727
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQ
Sbjct: 728 LFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQ 787
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++EP WY+PIIP VL
Sbjct: 788 FGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYDDNQRVEPEWYIPIIPMVL 847
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGV 916
+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ + GTIE+ AS +
Sbjct: 848 INGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKNYKGTIEELASNQ--- 904
Query: 917 TYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTT 972
Y + G + +N TT+ I ELPIR WTQ Y+E LE +++ + I +R+Y DTT
Sbjct: 905 -YVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTT 963
Query: 973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHI 1032
V F + ++EE + ++ GL K FKL T+++ ++M LFD G +KKYDT IL +FF +
Sbjct: 964 VKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFEL 1023
Query: 1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
RL++Y RK+ RFIL ++G+IV+ N+ + +L+ L Q+G+
Sbjct: 1024 RLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSD 1083
Query: 1093 P-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQS-IDYDYLLSMAIGTLTLEKVQGLLA 1149
P K K + V + + +S ++YLL M + LT EK L
Sbjct: 1084 PVKAWKEAQQKVPEEEENEENEESESESTSPAAESGPTFNYLLDMPLWYLTKEKKDELCK 1143
Query: 1150 DRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEERMKIKGNGNGDAGP 1208
RD+ +E++ L+K TP LW +DL A ++EL+ +A+ ++E++ + G G G
Sbjct: 1144 QRDEKEQELNTLKKKTPSDLWKEDLAAF---VEELEVVEAKEKQDEQVGLPGKGVKAKGK 1200
Query: 1209 KIVAKR---APKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLXXXXXXXXXXXX 1265
K +P R + + RA EA ++ K +G
Sbjct: 1201 KAQISEVLPSPVGKRVIPQVTMEMRA-EAEKKIRRKIKSENVEGTPAEDGAEPGLRQRLE 1259
Query: 1266 XXXXXXXXQRLAKLNEQLA------STKLEPSPDQSGVMETEK--VQVPAKKKEPSKRTA 1317
R AK L + K P D M + + VP ++KEP R A
Sbjct: 1260 KRQKREPGTR-AKKQTTLPFKPIKKAQKQNPWSDSESDMSSNESNFDVPPREKEP--RIA 1316
Query: 1318 AQKKVVTVE 1326
A K T +
Sbjct: 1317 ATKAKFTAD 1325
Score = 39 (18.8 bits), Expect = 2.0e-292, Sum P(2) = 2.0e-292
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 1385 LGQRLLTEMLKPAESSPEKKVRK 1407
+G+R++ ++ + EKK+R+
Sbjct: 1212 VGKRVIPQVTMEMRAEAEKKIRR 1234
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 1438 (511.3 bits), Expect = 1.0e-291, Sum P(4) = 1.0e-291
Identities = 313/704 (44%), Positives = 432/704 (61%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKA-----TNKNGKVLSFYS 609
M QD DGSHIKGLLINF +PSLL+IP+F EFITP+VK K ++ F++
Sbjct: 629 MADQDLDGSHIKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPKKPQRLQGFFT 688
Query: 610 MPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIE 669
+P YE WKE+ W KY KGLG+ST+ + + YF N+ H K+F ++ E E
Sbjct: 689 LPQYEEWKEAHRNELRRWKYKYLKGLGSSTTDDAQLYFTNLNKHLKEFDVMTREESEMFE 748
Query: 670 LAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGL 729
LAFSKKK +ARK+WL + EPG +LD + I Y+DFVN+ELILFSMAD RSIPSMVDGL
Sbjct: 749 LAFSKKKADARKEWLAKCEPGTYLDHSTEKISYTDFVNRELILFSMADNIRSIPSMVDGL 808
Query: 730 KPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNIN 789
KPGQRK+LF FK+N I + KV + +GYVS+ +AYHHGEQSL TI+G+AQ+FVGSNNIN
Sbjct: 809 KPGQRKVLFGCFKQNLIHDQKVVELAGYVSKEAAYHHGEQSLQQTIIGLAQNFVGSNNIN 868
Query: 790 LLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYM 849
L+P+G FG+R GG DAASARYI TRLSP+ R +F + +DG+ IEP Y
Sbjct: 869 CLEPSGNFGSRLSGGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQFDDGKLIEPKVYA 928
Query: 850 PIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL------NGEM--MEPMHPWYRG 901
PIIP VLVNG++GIGTGWS+ IPNY+P DIV N++R + +GE EPM PW+RG
Sbjct: 929 PIIPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEPMTPWFRG 988
Query: 902 FGGTIEKTASKEAGVTYTVTGIIE--EVNETTLRIKELPIRRWTQDYREFLESII--DQN 957
+ GT E + GI+E N + + ELPIR WT D++ LE II D++
Sbjct: 989 WKGTPEPDGPNR----FKFNGIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKS 1044
Query: 958 DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIK 1017
S+I+ +++Y+D TV F + L E+ M ++GL++KFKLT T++T+N+ FD++G I
Sbjct: 1045 PSWIKDYKEYNDHQTVHFIIALEEKHMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIH 1104
Query: 1018 KYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKR 1077
KY+ P++I+EE++H RL Y +RKK RFI ++ ++VV+ +K+
Sbjct: 1105 KYENPQEIMEEYYHYRLNLYGERKKHWLKVYHADYRKLQNQYRFISEIIENKLVVSKKKK 1164
Query: 1078 TDLLLELRQKGFTPFP-----KNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLL 1132
+ L+ ELR++ + FP +N KS + + GA D V G + DYDYLL
Sbjct: 1165 SVLVQELRERKYEAFPPKSDGRNVKSPDEEL-GAADNEDEEDA----VGGAR--DYDYLL 1217
Query: 1133 SMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDE-LDKSDARA 1191
SM I +LT E++ L E D+L + + LW +DLDA + +E L D
Sbjct: 1218 SMPIWSLTFERLDKLKQQIAAKKAEHDELDALSEKDLWCRDLDAFTAEWEEQLRLEDEVR 1277
Query: 1192 EEERMKIKG-NGNGDAGPKIVAKRAPKNARKNDKKSNNARATEA 1234
+E R K + + G A ++ R K+ D + A+A A
Sbjct: 1278 KEIRQKGRRVSYKGGAVSRLKKSRGAKDDEDFDPGAKKAKAKAA 1321
Score = 1311 (466.6 bits), Expect = 1.0e-291, Sum P(4) = 1.0e-291
Identities = 270/517 (52%), Positives = 349/517 (67%)
Query: 21 TAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLY 80
T KT EMYQK +QLEHIL RPDTYIGS+E+ Q +W++ + + M +R IS+VPGLY
Sbjct: 121 TGAAKTATEMYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLY 180
Query: 81 KIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIF 140
KIFDEILVNAADN QRD M +KV I++E ISV N+G G+PVEIH E YVPELIF
Sbjct: 181 KIFDEILVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIHGTEKCYVPELIF 240
Query: 141 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKS 200
GHLL SN+DDN KKT GGRNGYGAKLTNIFS EF +E D K+YKQ +T+NM K S
Sbjct: 241 GHLLAGSNFDDNEKKTVGGRNGYGAKLTNIFSREFTLECQDSVNGKRYKQTWTDNMSKMS 300
Query: 201 EPNISKCKEGDNWTKVSFKPDLAKFNMTH-LEDDVVALMKKRVVDLAGCLGKSVKVELNG 259
P I+ K D + +++F+PD +KF M ++DD+ AL+ +RV D+AG L L
Sbjct: 301 PPKITSNKAAD-FVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTLNFKTYCGLYA 359
Query: 260 HRVPVK--SFAEYVDMYPKSVTRFHERVNER-WEICVTLSEGQFQQVSFVNGIATIKGGT 316
+ + A+ D+ P +V +R + WE+ T+S+G FQQVSFVN IAT GG+
Sbjct: 360 KAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQQVSFVNNIATTSGGS 419
Query: 317 HVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLR 375
HV+Y+A+Q ++F+N LIDNPAF SQTKE LT +
Sbjct: 420 HVNYIADQIIEVLMKELQKKKGKGHGLKTANVKNQFFIFINCLIDNPAFSSQTKEQLTTK 479
Query: 376 QSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDA 435
+ FGSKC+L + FLKKV +S ++ LLS+A+ K+ KDL KNDG+K + + KL +A
Sbjct: 480 PAKFGSKCQLGDLFLKKVR-QSEAIDNLLSFADKKRDKDLAKNDGSKRKRISN-DKLIEA 537
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AGGR S++CTLILTEGDSA+ LA+AG +++ +R GVFPLRGK+LNVR+AS++Q+L N
Sbjct: 538 NYAGGRYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRDASADQILKN 597
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVL 532
E+ NIKK LGLK G Y + K LRYGHLMIM DQ L
Sbjct: 598 KEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDL 634
Score = 57 (25.1 bits), Expect = 8.7e-288, Sum P(3) = 8.7e-288
Identities = 34/160 (21%), Positives = 57/160 (35%)
Query: 1178 DMQLDELDKSDARAEEERMKI-KGNGNGDAGPKIVAKRAPKNARKNDKKS---NNARATE 1233
D + L KS R + + +G+ + G K+ A AP A+K + + N A +
Sbjct: 1721 DTNYEALAKSSPRKHSKTGEADEGSEDDSIGKKVNA--APVVAKKRGRPAGSKNKATDDD 1778
Query: 1234 AMGEMDNVTKVVKPKGRAGLXXXXXXX--XXXXXXXXXXXXXQRLAKLNEQLASTKLEPS 1291
A KV K A + AK N++ +
Sbjct: 1779 AAAPKPK-PKVTAKKAAAAAAGETASAVPAKLKTLVHLSPAAKAYAKKNQKATKLASDDE 1837
Query: 1292 PDQSG--VMETEKVQVPAKKKEPSKRTAAQKKVVTVETSD 1329
D G V+ + PA+ + P + AA+K +V S+
Sbjct: 1838 DDLDGDDVVMKDPAPAPARSR-PGRAAAARKPIVIDSASE 1876
Score = 56 (24.8 bits), Expect = 1.1e-287, Sum P(3) = 1.1e-287
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 1278 KLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSD 1329
K + L E D + E EK PA K +KR AA KK +E D
Sbjct: 1562 KKSPVLEDDDFESDADDKILSEAEK---PAPAKATAKRAAAAKKSPVLEDDD 1610
Score = 55 (24.4 bits), Expect = 1.0e-291, Sum P(4) = 1.0e-291
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 1370 TKKRGPAKKQQP-------EASLGQRLLTEMLKPAESSPEKKVRKMRASPF 1413
T KR A K+ P E+ ++++E KPA ++P K+ +A F
Sbjct: 1593 TAKRAAAAKKSPVLEDDDLESDGDDKMVSEAEKPAPANPRKRAAAAKAKSF 1643
Score = 53 (23.7 bits), Expect = 1.0e-291, Sum P(4) = 1.0e-291
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 1288 LEPSPDQSGVMETEKVQVPAKK-KEPSKRTAAQKKVVTVETSD 1329
+E S + + E EK PA K P+KR AA KK +E D
Sbjct: 1532 VEDSDEDMMLSEAEK---PAHAAKPPTKRAAAVKKSPVLEDDD 1571
Score = 53 (23.7 bits), Expect = 2.3e-287, Sum P(3) = 2.3e-287
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 1184 LDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTK 1243
L K +RA + + + D + +AK +P+ K + + +++G+ N
Sbjct: 1700 LPKVKSRAFHTKAFLDNDSQDDTNYEALAKSSPRKHSKTGEADEGSE-DDSIGKKVNAAP 1758
Query: 1244 VV-KPKGR-AG 1252
VV K +GR AG
Sbjct: 1759 VVAKKRGRPAG 1769
Score = 52 (23.4 bits), Expect = 1.3e-291, Sum P(4) = 1.3e-291
Identities = 40/177 (22%), Positives = 64/177 (36%)
Query: 1156 EEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGP--KIVAK 1213
E+ + K P+S D A D+ D+ D + +A K + DA P I +
Sbjct: 1335 EKFSGMAKPKPKSTAFTD-GADDLSDDDFDLLNKKAPAAAKK----KDEDAEPVTTIASV 1389
Query: 1214 RAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLXXXXXXXXXXXXXXXXXXXX 1273
RA K A K+ ++ E ++ KV +
Sbjct: 1390 RA-KRATVAKPKTYALSDEDSDDEFLDIAKVTTTSEKTTTSASASVSAAEQSEQPVAKPA 1448
Query: 1274 QRLAKLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKR-TAAQKKVVTVETSD 1329
+R A + + E D E+E+ +P K +KR TAA+K + E SD
Sbjct: 1449 RRAAGAKKPIVDEDSESDLDDFIDDESEEEVIP---KPTTKRATAAKKPALEDEDSD 1502
Score = 40 (19.1 bits), Expect = 4.5e-142, Sum P(4) = 4.5e-142
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1274 QRLAKLNEQLASTKLE 1289
+RL KL +Q+A+ K E
Sbjct: 1227 ERLDKLKQQIAAKKAE 1242
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 1364 (485.2 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 263/554 (47%), Positives = 376/554 (67%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK----NGK-VLSFYS 609
M QD DGSHIKGL+INF+ + +P LL IP FL+EFITPIVK T K GK V+ FY+
Sbjct: 581 MTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIPFYT 640
Query: 610 MPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIE 669
MP++E W+++ G W+ KYYKGLGTST E +EYF + H K F +D + I+
Sbjct: 641 MPEFEHWRDT-EGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHALQGEDKDYID 699
Query: 670 LAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGL 729
LAFSKKK + RK+WL F PG HLD + I SDF+NKELILFSM+D RSIPS++DG
Sbjct: 700 LAFSKKKADERKEWLQGFLPGTHLDPEITEIPISDFINKELILFSMSDNVRSIPSVLDGF 759
Query: 730 KPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNIN 789
KPGQRK+L+ FK+ E KVAQ +GYVSE++ YHHGEQSL TI+G+AQ+FVGSNNIN
Sbjct: 760 KPGQRKVLYGCFKKKLRSEIKVAQLAGYVSENTGYHHGEQSLVQTIIGLAQNFVGSNNIN 819
Query: 790 LLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYM 849
+L+PNG FG+R GGKD ++ARYIFT LS ITR +F Y+ +D Q +EP WY+
Sbjct: 820 VLKPNGSFGSRAAGGKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQDDEQTVEPEWYL 879
Query: 850 PIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKT 909
P++P +LVNG+EGIGTGWS+ IP+YNP+D+V N+RRL+NGE ++ M PWY+G+GG +E
Sbjct: 880 PVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQEMTPWYKGWGGDLEPM 939
Query: 910 ASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESII--DQNDSFIRGFRQY 967
++ + V+G IE+++ T+ I E+P++ WT + +EFL S ++ +I+ ++
Sbjct: 940 GPQK----FKVSGRIEQIDSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH 995
Query: 968 SDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1027
T++ F + L++ M ++ + GLL++FKL +++S +NM FD G IKKY+ +I++
Sbjct: 996 HT-TSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIK 1054
Query: 1028 EFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQK 1087
+F+++RLE+Y+KRK RFI ++ ++ V N+K+ L+ L +
Sbjct: 1055 DFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEEH 1114
Query: 1088 GFTPFPKNSKSIEA 1101
FT F K+ K I++
Sbjct: 1115 NFTKFSKDGKPIKS 1128
Score = 743 (266.6 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 142/274 (51%), Positives = 199/274 (72%)
Query: 8 PLTTSNNANVVGP--TAPNKT-IEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEE 64
PL + N+ V + P T E YQK SQLEHIL RPDTYIGS+EK +W ++ E
Sbjct: 36 PLGDATNSTVSSSRSSTPKPTNASETYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAE 95
Query: 65 SKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVP 124
+++M+ + ++ VPGLYKIFDEILVNAADNK RDP M ++V ID E+++I V N G G+P
Sbjct: 96 TESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIP 155
Query: 125 VEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 184
+E+H +E +Y+PELIFG+LLTSSNYDD+ KK TGGRNG+GAKL NIFST+F +ETAD
Sbjct: 156 IEMHTKENMYIPELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNM 215
Query: 185 LKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVD 244
K YKQ +TNNM S+P I+ + +TK++F+PDL+KF+M L++D+++++++RV D
Sbjct: 216 GKLYKQSWTNNMSNVSKPKITTLRPKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYD 275
Query: 245 LAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSV 278
L G + K+ + LN R+ + SF YV+MY K++
Sbjct: 276 LCGTV-KNCNIYLNDKRLNISSFKGYVEMYVKAI 308
Score = 569 (205.4 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 122/259 (47%), Positives = 165/259 (63%)
Query: 279 TRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXX 338
T HE N+RWE+ +S+G F QVSFVN IAT GGTHV YV++Q
Sbjct: 327 TIVHEVFNDRWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEK 386
Query: 339 XXXXXXXX---XXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCEL--SEEFLKKV 393
+++F+N LI+NPAF SQTKE LT + S FG K + ++ + ++
Sbjct: 387 GKKKLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFGGKDKFVANDNLINRI 446
Query: 394 TAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEG 453
K+ IV+ + + AN + K L+K DG++ ++G L DAN AG ++ CTLILTEG
Sbjct: 447 L-KTSIVDKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEG 505
Query: 454 DSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEY 513
SA LA+AGLSVVGRD +G FPLRGKLLNVREAS++Q+ N+EI ++K+I+GL+ Y
Sbjct: 506 LSAMNLAVAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVY 565
Query: 514 N--NVKSLRYGHLMIMTDQ 530
N+KSLRYGH+MIMTDQ
Sbjct: 566 TAENIKSLRYGHIMIMTDQ 584
Score = 136 (52.9 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 35/98 (35%), Positives = 52/98 (53%)
Query: 1128 YDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKS 1187
YDYLL MAI +LT E+ ++ RD+ E++ L + + LW +DLD L E DK
Sbjct: 1180 YDYLLGMAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKDLWNQDLDEF---LAEFDKF 1236
Query: 1188 DARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKK 1225
R E+ER + NG + + A K+ + N+KK
Sbjct: 1237 LLRDEQERESLASNGKKKSTKRRAKATATKD-QPNNKK 1273
Score = 55 (24.4 bits), Expect = 4.4e-125, Sum P(3) = 4.4e-125
Identities = 42/144 (29%), Positives = 62/144 (43%)
Query: 593 PIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITL 652
P+VK N S S P + S ++SS + K K G +TS KE + ITL
Sbjct: 1288 PVVKKEASNEPQASSSSKPKEKDDILSFFSSSSSSAKKTTKPSGRATSN--KE-IETITL 1344
Query: 653 HKKDFVWEDDQDGEAIELAFSKK-KIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELI 711
D +DD+D + + S K K E + + P +K K K S K+ I
Sbjct: 1345 FSDD---DDDEDIFNLNSSSSTKVKKETKSR---SATPAA---EKSKKPKSS---GKQSI 1392
Query: 712 LFSMADLQRSIPSMVDGLKPGQRK 735
L + DL+ I D +P +R+
Sbjct: 1393 LDELEDLE--ILGNFDKPEPKERR 1414
Score = 49 (22.3 bits), Expect = 3.8e-124, Sum P(4) = 3.8e-124
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 613 YEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHK--KDFVWEDDQD 664
Y ++ LG + WS+ Y + + ++ KE N L K KD +W D D
Sbjct: 1177 YSSYDYLLG--MAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKD-LWNQDLD 1227
Score = 43 (20.2 bits), Expect = 1.6e-123, Sum P(4) = 1.6e-123
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 635 LGTSTSKEGKEYF-QNIT--LHKKD-FVWEDDQDGEAIELAFSKKKIEARKK-WLLQFEP 689
L SK K+ + Q++ L + D F+ D+Q+ E++ KK + R K + +P
Sbjct: 1210 LNALLSKSAKDLWNQDLDEFLAEFDKFLLRDEQERESLASNGKKKSTKRRAKATATKDQP 1269
Query: 690 GNH---LDQKEKY-IKYSDFVNKE 709
N ++ KEK I V KE
Sbjct: 1270 NNKKVKVEPKEKKSISAKPVVKKE 1293
Score = 42 (19.8 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQVPAKKK-EPSKRTAAQKKVVTV 1325
NE AS+ +P + AKK +PS R + K++ T+
Sbjct: 1296 NEPQASSSSKPKEKDDILSFFSSSSSSAKKTTKPSGRATSNKEIETI 1342
Score = 41 (19.5 bits), Expect = 1.8e-157, Sum P(4) = 1.8e-157
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 10 TTSNNANV--VGPTAPNKTIEEMYQKKSQLEHILLRP 44
TTS +V V NK +E + +K+ + ++++P
Sbjct: 359 TTSGGTHVKYVSDQIINKLVETLSKKEKGKKKLMIKP 395
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 1364 (485.2 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 263/554 (47%), Positives = 376/554 (67%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK----NGK-VLSFYS 609
M QD DGSHIKGL+INF+ + +P LL IP FL+EFITPIVK T K GK V+ FY+
Sbjct: 581 MTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIPFYT 640
Query: 610 MPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIE 669
MP++E W+++ G W+ KYYKGLGTST E +EYF + H K F +D + I+
Sbjct: 641 MPEFEHWRDT-EGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHALQGEDKDYID 699
Query: 670 LAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGL 729
LAFSKKK + RK+WL F PG HLD + I SDF+NKELILFSM+D RSIPS++DG
Sbjct: 700 LAFSKKKADERKEWLQGFLPGTHLDPEITEIPISDFINKELILFSMSDNVRSIPSVLDGF 759
Query: 730 KPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNIN 789
KPGQRK+L+ FK+ E KVAQ +GYVSE++ YHHGEQSL TI+G+AQ+FVGSNNIN
Sbjct: 760 KPGQRKVLYGCFKKKLRSEIKVAQLAGYVSENTGYHHGEQSLVQTIIGLAQNFVGSNNIN 819
Query: 790 LLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYM 849
+L+PNG FG+R GGKD ++ARYIFT LS ITR +F Y+ +D Q +EP WY+
Sbjct: 820 VLKPNGSFGSRAAGGKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQDDEQTVEPEWYL 879
Query: 850 PIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKT 909
P++P +LVNG+EGIGTGWS+ IP+YNP+D+V N+RRL+NGE ++ M PWY+G+GG +E
Sbjct: 880 PVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQEMTPWYKGWGGDLEPM 939
Query: 910 ASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESII--DQNDSFIRGFRQY 967
++ + V+G IE+++ T+ I E+P++ WT + +EFL S ++ +I+ ++
Sbjct: 940 GPQK----FKVSGRIEQIDSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH 995
Query: 968 SDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1027
T++ F + L++ M ++ + GLL++FKL +++S +NM FD G IKKY+ +I++
Sbjct: 996 HT-TSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIK 1054
Query: 1028 EFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQK 1087
+F+++RLE+Y+KRK RFI ++ ++ V N+K+ L+ L +
Sbjct: 1055 DFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEEH 1114
Query: 1088 GFTPFPKNSKSIEA 1101
FT F K+ K I++
Sbjct: 1115 NFTKFSKDGKPIKS 1128
Score = 743 (266.6 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 142/274 (51%), Positives = 199/274 (72%)
Query: 8 PLTTSNNANVVGP--TAPNKT-IEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEE 64
PL + N+ V + P T E YQK SQLEHIL RPDTYIGS+EK +W ++ E
Sbjct: 36 PLGDATNSTVSSSRSSTPKPTNASETYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAE 95
Query: 65 SKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVP 124
+++M+ + ++ VPGLYKIFDEILVNAADNK RDP M ++V ID E+++I V N G G+P
Sbjct: 96 TESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIP 155
Query: 125 VEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 184
+E+H +E +Y+PELIFG+LLTSSNYDD+ KK TGGRNG+GAKL NIFST+F +ETAD
Sbjct: 156 IEMHTKENMYIPELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNM 215
Query: 185 LKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVD 244
K YKQ +TNNM S+P I+ + +TK++F+PDL+KF+M L++D+++++++RV D
Sbjct: 216 GKLYKQSWTNNMSNVSKPKITTLRPKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYD 275
Query: 245 LAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSV 278
L G + K+ + LN R+ + SF YV+MY K++
Sbjct: 276 LCGTV-KNCNIYLNDKRLNISSFKGYVEMYVKAI 308
Score = 569 (205.4 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 122/259 (47%), Positives = 165/259 (63%)
Query: 279 TRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXX 338
T HE N+RWE+ +S+G F QVSFVN IAT GGTHV YV++Q
Sbjct: 327 TIVHEVFNDRWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEK 386
Query: 339 XXXXXXXX---XXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCEL--SEEFLKKV 393
+++F+N LI+NPAF SQTKE LT + S FG K + ++ + ++
Sbjct: 387 GKKKLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFGGKDKFVANDNLINRI 446
Query: 394 TAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEG 453
K+ IV+ + + AN + K L+K DG++ ++G L DAN AG ++ CTLILTEG
Sbjct: 447 L-KTSIVDKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEG 505
Query: 454 DSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEY 513
SA LA+AGLSVVGRD +G FPLRGKLLNVREAS++Q+ N+EI ++K+I+GL+ Y
Sbjct: 506 LSAMNLAVAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVY 565
Query: 514 N--NVKSLRYGHLMIMTDQ 530
N+KSLRYGH+MIMTDQ
Sbjct: 566 TAENIKSLRYGHIMIMTDQ 584
Score = 136 (52.9 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 35/98 (35%), Positives = 52/98 (53%)
Query: 1128 YDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKS 1187
YDYLL MAI +LT E+ ++ RD+ E++ L + + LW +DLD L E DK
Sbjct: 1180 YDYLLGMAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKDLWNQDLDEF---LAEFDKF 1236
Query: 1188 DARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKK 1225
R E+ER + NG + + A K+ + N+KK
Sbjct: 1237 LLRDEQERESLASNGKKKSTKRRAKATATKD-QPNNKK 1273
Score = 55 (24.4 bits), Expect = 4.4e-125, Sum P(3) = 4.4e-125
Identities = 42/144 (29%), Positives = 62/144 (43%)
Query: 593 PIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITL 652
P+VK N S S P + S ++SS + K K G +TS KE + ITL
Sbjct: 1288 PVVKKEASNEPQASSSSKPKEKDDILSFFSSSSSSAKKTTKPSGRATSN--KE-IETITL 1344
Query: 653 HKKDFVWEDDQDGEAIELAFSKK-KIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELI 711
D +DD+D + + S K K E + + P +K K K S K+ I
Sbjct: 1345 FSDD---DDDEDIFNLNSSSSTKVKKETKSR---SATPAA---EKSKKPKSS---GKQSI 1392
Query: 712 LFSMADLQRSIPSMVDGLKPGQRK 735
L + DL+ I D +P +R+
Sbjct: 1393 LDELEDLE--ILGNFDKPEPKERR 1414
Score = 49 (22.3 bits), Expect = 3.8e-124, Sum P(4) = 3.8e-124
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 613 YEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHK--KDFVWEDDQD 664
Y ++ LG + WS+ Y + + ++ KE N L K KD +W D D
Sbjct: 1177 YSSYDYLLG--MAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKD-LWNQDLD 1227
Score = 43 (20.2 bits), Expect = 1.6e-123, Sum P(4) = 1.6e-123
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 635 LGTSTSKEGKEYF-QNIT--LHKKD-FVWEDDQDGEAIELAFSKKKIEARKK-WLLQFEP 689
L SK K+ + Q++ L + D F+ D+Q+ E++ KK + R K + +P
Sbjct: 1210 LNALLSKSAKDLWNQDLDEFLAEFDKFLLRDEQERESLASNGKKKSTKRRAKATATKDQP 1269
Query: 690 GNH---LDQKEKY-IKYSDFVNKE 709
N ++ KEK I V KE
Sbjct: 1270 NNKKVKVEPKEKKSISAKPVVKKE 1293
Score = 42 (19.8 bits), Expect = 3.1e-290, Sum P(5) = 3.1e-290
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQVPAKKK-EPSKRTAAQKKVVTV 1325
NE AS+ +P + AKK +PS R + K++ T+
Sbjct: 1296 NEPQASSSSKPKEKDDILSFFSSSSSSAKKTTKPSGRATSNKEIETI 1342
Score = 41 (19.5 bits), Expect = 1.8e-157, Sum P(4) = 1.8e-157
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 10 TTSNNANV--VGPTAPNKTIEEMYQKKSQLEHILLRP 44
TTS +V V NK +E + +K+ + ++++P
Sbjct: 359 TTSGGTHVKYVSDQIINKLVETLSKKEKGKKKLMIKP 395
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 2714 (960.4 bits), Expect = 8.7e-288, Sum P(3) = 8.7e-288
Identities = 585/1216 (48%), Positives = 772/1216 (63%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+++E++ M R I++VPGLYKIFDE
Sbjct: 28 SVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTG-MNCRDITFVPGLYKIFDE 86
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRD M+ +KV ID E++ ISV N+G G+PV H+ E VYVP LIFG LLT
Sbjct: 87 ILVNAADNKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLT 146
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFS +F +ETA + + +KQ + +NM + E I
Sbjct: 147 SSNYDDDEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKRCFKQTWFDNMERAGESKI- 205
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K +GD++T ++F+PDLAKF M L+ D VAL+ +R D+AG K V+V LNG R+P+
Sbjct: 206 KPFDGDDYTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAGST-KGVRVLLNGKRLPIN 264
Query: 266 SFAEYVDMYPKS--------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
+F YVD+Y K +T HE VNERWE+C+TLSE FQQVSFVN I KGG H
Sbjct: 265 NFRTYVDLYVKDKVDETGSPLTVVHEMVNERWEVCLTLSEKGFQQVSFVNSIDKNKGGRH 324
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQ 376
DYVA+Q +W+FVN LI+NP+FDSQTKE +TL+Q
Sbjct: 325 TDYVADQIVSKLIEVVKKKNKAGVAVKPFQVKNHMWLFVNCLIENPSFDSQTKENMTLQQ 384
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
+FGS C LS++F+K+ GIVE++++W FK L KK K ++G+ KL+DA
Sbjct: 385 KNFGSACSLSDKFVKQANG-CGIVESIMNWVKFKAQAQLNKKCSAVKHTKIKGVPKLDDA 443
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AGG+NS CTLILTEGDSAK LA++GL VVGRDR+GVFPLRGK+LNVREAS Q++ N
Sbjct: 444 NDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNVREASHKQIMEN 503
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KILGL+ Y++ +SL+ S ++I M
Sbjct: 504 AEINNIIKILGLQYKKNYSDPESLK----------------SLRYGKLMI---------M 538
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ +FL EFITPI+KA+NK ++ SFYS+P++
Sbjct: 539 TDQDQDGSHIKGLLINFIHHNWPSLLR-HNFLEEFITPIIKASNKKQEI-SFYSIPEFTE 596
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WKE + SW IKYYKGLGTSTSKE KEYF ++T H+ F + D EAI LAFSKK
Sbjct: 597 WKEKQS-SIKSWKIKYYKGLGTSTSKEAKEYFSDMTRHRIPFKYSGPADDEAITLAFSKK 655
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
IE RK+WL F P +L Q+ K + Y DF+NKEL+LFS +D +RSIP
Sbjct: 656 MIEERKEWLTSFMINRRQRREHNLPEEYLYGQETKSLSYHDFINKELVLFSNSDNERSIP 715
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
MVDGLKPGQRK++FC FKRN +E KVAQ +G V+E SAYHHGE SL TI+G+AQ+FV
Sbjct: 716 CMVDGLKPGQRKVVFCCFKRNDKREVKVAQLAGSVAEMSAYHHGEVSLMMTIVGLAQNFV 775
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LS + R LFP Y +D ++
Sbjct: 776 GSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLKYNYDDYLRV 835
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMH--PWYRG 901
EP WYMPIIP VL NG EGIGTGW+S IP Y+ R+I+ N+ R++NGE PM P Y+G
Sbjct: 836 EPEWYMPIIPLVLANGGEGIGTGWASRIPKYDVREIINNIHRMINGEEPLPMVNLPSYKG 895
Query: 902 FGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQD--YRE-FLESIIDQND 958
F GTI++ A + Y G + ++ TT+ I ELP++ WT Y+E LE +++ +
Sbjct: 896 FKGTIDELAKNQ----YVNNGEVAIIDSTTIEITELPVKTWTPGLTYKENVLEVMLNGTE 951
Query: 959 ---SFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGV 1015
+ I +++Y DTTV F V ++EE + + GL K FKL ++ ++M LFD G
Sbjct: 952 KVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGLHKVFKLQNLLTCNSMVLFDHVGS 1011
Query: 1016 IKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNR 1075
+KKY++ + IL+EFF +R+++Y RK RFIL + G +V+ N+
Sbjct: 1012 LKKYESVQDILKEFFELRMKYYVLRKDWLVGMLGAESAKLSNQARFILEKIQGTLVIENK 1071
Query: 1076 KRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSIDYDYLLSMA 1135
+ +L+ L+Q G+ P + D +G DY+YLLSM
Sbjct: 1072 PKKELIRMLQQMGYDSDPVKAWKDAQEKEEEEDAEDDDEKEKEDTSGP---DYNYLLSMP 1128
Query: 1136 IGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEER 1195
+ LT EK L RD E++ L+ P LW +DL A +L+ +++ + A+
Sbjct: 1129 MWYLTKEKKDELCKQRDAKMTELNTLKMKAPADLWKEDLAAFTEELERVEQKEKEAQNAM 1188
Query: 1196 MKIKGNGNGDAGPKIV 1211
+KG PK+V
Sbjct: 1189 PLVKGKVGK---PKVV 1201
Score = 50 (22.7 bits), Expect = 8.7e-288, Sum P(3) = 8.7e-288
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 1162 RKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARK 1221
+K +S LD L + KS + +K + + AGP + K+A K RK
Sbjct: 1441 KKKAADSKQPSILDVLSKASPK--KSKVVKKPTAVKPLSSDSDSAGPAVAKKQAKK--RK 1496
Query: 1222 NDKKSNNARATEAMGEMDNVTKVVKPKGRAG 1252
+ S+ + ++++ + N+ +K K AG
Sbjct: 1497 SVLSSDQSDSSDS--DSGNLMSRLKGKSTAG 1525
Score = 45 (20.9 bits), Expect = 1.1e-284, Sum P(2) = 1.1e-284
Identities = 30/137 (21%), Positives = 52/137 (37%)
Query: 1189 ARAEEERMKIKGNGNGDAG----PKIVAKRAPKNARKNDKKSNNARATEAMGE------M 1238
A+AE+ K + + +A PK V K A A+K K +A + + + +
Sbjct: 1394 AKAEKPEASSKSSSHSEASQEPAPKPVKKSAEGAAKKPPAKKTSAVSKKKAADSKQPSIL 1453
Query: 1239 DNVTKVVKPKGRAGLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQ-LASTKLEPSPDQSG- 1296
D ++K K + ++ AK + L+S + + S SG
Sbjct: 1454 DVLSKASPKKSKVVKKPTAVKPLSSDSDSAGPAVAKKQAKKRKSVLSSDQSDSSDSDSGN 1513
Query: 1297 VMETEKVQVPAKKKEPS 1313
+M K + A KK S
Sbjct: 1514 LMSRLKGKSTAGKKAKS 1530
Score = 42 (19.8 bits), Expect = 8.7e-288, Sum P(3) = 8.7e-288
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1299 ETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
ETEKV V A + + RT K V SDS
Sbjct: 1541 ETEKVVVSAAPRSRAARTT--KPVTYALDSDS 1570
Score = 42 (19.8 bits), Expect = 2.2e-284, Sum P(2) = 2.2e-284
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 1277 AKLNEQLASTKLEPSPDQSGVMETEKVQVPAK---KKEPSKRTAAQKK 1321
AK + AS+K + S + V+ A+ KK P+K+T+A K
Sbjct: 1394 AKAEKPEASSKSSSHSEASQEPAPKPVKKSAEGAAKKPPAKKTSAVSK 1441
Score = 40 (19.1 bits), Expect = 3.6e-284, Sum P(2) = 3.6e-284
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 1372 KRGPAKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRAS-PFNKKSGSM 1420
K AK ++PEAS +E + P KK + A P KK+ ++
Sbjct: 1390 KVAKAKAEKPEASSKSSSHSEASQEPAPKPVKKSAEGAAKKPPAKKTSAV 1439
Score = 37 (18.1 bits), Expect = 7.5e-284, Sum P(2) = 7.5e-284
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 1290 PSPDQSGVMETEKVQVPAKKKEPSK--RTAAQKKVVTVETS 1328
P P + + + P KK P+K + A+K + ++S
Sbjct: 1366 PEPSAAPDSDVDSPPPPVVKKAPTKVAKAKAEKPEASSKSS 1406
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 1475 (524.3 bits), Expect = 1.7e-284, Sum P(2) = 1.7e-284
Identities = 312/713 (43%), Positives = 431/713 (60%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKA--TNKNGKVLSFYSMPD 612
M QDHDGSHIKGL+INF+ S +P LL I FL+EFITPI+K T ++FY+MPD
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583
Query: 613 YEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAF 672
YE W+E + +W KYYKGLGTS ++E +EYF N+ H K F D + I+LAF
Sbjct: 584 YEKWREE-ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAF 642
Query: 673 SKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPG 732
SKKK + RK+WL Q+EPG LD K I SDF+NKELILFS+AD RSIP+++DG KPG
Sbjct: 643 SKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPG 702
Query: 733 QRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQ 792
QRK+L+ FK+N E KVAQ + YVSE +AYHHGEQSLA TI+G+AQ+FVGSNNI LL
Sbjct: 703 QRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLL 762
Query: 793 PNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPII 852
PNG FGTR GGKDAA+ARYI+T L+ +TR +F Y+ ED + +EP WY+PI+
Sbjct: 763 PNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPIL 822
Query: 853 PTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASK 912
P +LVNG+EGIGTGWS+YIP +NP +I+ N+R L+N E +E MHPW+RG+ GTIE+
Sbjct: 823 PMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEP- 881
Query: 913 EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDS---FIRGFRQYSD 969
+ Y + G IE++ + L I ELP R WT +E+L + ND +I+ + D
Sbjct: 882 ---LRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD 938
Query: 970 DTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEF 1029
D + F + LS E M +T++ G ++FKL + IS NM FD G IKKY++ +IL EF
Sbjct: 939 DN-IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEF 997
Query: 1030 FHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGF 1089
+++RLE+Y+KRK V+FI ++ E+ V N+ R ++ EL GF
Sbjct: 998 YYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGF 1057
Query: 1090 TPFPK---------NSKSIEAV--VAGAT----DXXXXXXXXXXVVNGVQSI--DYDYLL 1132
F K N + E + V GAT D V+NG + + Y+YLL
Sbjct: 1058 PRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLL 1117
Query: 1133 SMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAE 1192
M I +LT E+ Q LL + + E+++L K + + +W DL A ++ E + DA A
Sbjct: 1118 GMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 1177
Query: 1193 EERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVV 1245
+ KG+ G + + + K +KKS + + E N +++
Sbjct: 1178 GGNVPNKGSKTKGKGKRKLVDDEDYDPSKKNKKSTARKGKKIKLEDKNFERIL 1230
Score = 1282 (456.3 bits), Expect = 1.7e-284, Sum P(2) = 1.7e-284
Identities = 263/520 (50%), Positives = 346/520 (66%)
Query: 29 EMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILV 88
+ YQK SQLEHIL RPDTYIGS+E Q WIY+EE+ MI + ++ VPGL+KIFDEILV
Sbjct: 10 DKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILV 69
Query: 89 NAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSN 148
NAADNK RDP M + V I E I V N G G+P+EIH +E +Y+PE+IFGHLLTSSN
Sbjct: 70 NAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSN 129
Query: 149 YDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCK 208
YDD+ KK TGGRNGYGAKL NIFSTEFI+ETAD +KY Q + NNM P I+ K
Sbjct: 130 YDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYK 189
Query: 209 EGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCL--------GKSVKVE--LN 258
+G ++TKV+FKPDL +F M L++D++ +M++RV D+ G + GKS+K+ N
Sbjct: 190 KGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGKSLKIRNFKN 249
Query: 259 GHRVPVKSFAEY------VDMYPKS--VTRFHERVNERWEICVTLSEGQFQQVSFVNGIA 310
+ +KS + D KS T +ER+N RWE+ +S+ FQQ+SFVN IA
Sbjct: 250 YVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQISFVNSIA 309
Query: 311 TIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTKE 370
T GGTHV+Y+ +Q +++F+N LI+NPAF SQTKE
Sbjct: 310 TTMGGTHVNYITDQIVKKISEILKKKKKKSVKSFQIKNN-MFIFINCLIENPAFTSQTKE 368
Query: 371 TLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGIS 430
LT R FGS+CE+ E++ K+ K+ + + A+ + LKK+DGT+ +
Sbjct: 369 QLTTRVKDFGSRCEIPLEYINKIM-KTDLATRMFEIADANEENALKKSDGTRKSRITNYP 427
Query: 431 KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSN 490
KLEDAN AG + +CTL+LTEGDSA +LA+AGL+VVGRD +G +PLRGK+LNVREAS++
Sbjct: 428 KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASAD 487
Query: 491 QVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQ 530
Q+L N+EI IKKI+GL+ +Y + KSLRYGHLMIMTDQ
Sbjct: 488 QILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQ 527
Score = 48 (22.0 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
Identities = 6/32 (18%), Positives = 20/32 (62%)
Query: 644 KEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
K Y + + L F+ +D+++ + +++F+++
Sbjct: 1396 KSYVETLELSDDSFIEDDEEENQGSDVSFNEE 1427
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 2690 (952.0 bits), Expect = 2.3e-282, Sum P(2) = 2.3e-282
Identities = 574/1214 (47%), Positives = 778/1214 (64%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ + +R +++VPGLYKIFDE
Sbjct: 28 SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDE 86
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V ID E++LIS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 87 ILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 146
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ + +NMG+ + +
Sbjct: 147 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMEL- 205
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K G+++T ++F+PDL+KF M L+ D+VALM +R D+AG K VKV LNG+R+PVK
Sbjct: 206 KPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST-KDVKVFLNGNRLPVK 264
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVDMY K ++ HE+VN RWE+C+T+SE FQQ+SFVN IAT KGG H
Sbjct: 265 GFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRH 324
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXXXXXX-XXLWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYVA+Q + + ++ + + +Q+ TL
Sbjct: 325 VDYVADQIVSKLVDVVKKKNKGGVAVKAHQLPGHIQITGSSFVAHDGLLTQSPPTLYPSS 384
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
+ + C+ +F+K GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 385 ARLSNTCQAQHKFIKNAIG-CGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDA 443
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AG RNS +CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 444 NDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 503
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y + SL+ + ++++ M
Sbjct: 504 AEINNIIKIVGLQYKKNYEDEDSLK----TLRYGKIMI---------------------M 538
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ FL EFITPIVK + KN + ++FYS+P++E
Sbjct: 539 TDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFITPIVKVS-KNKQEIAFYSLPEFEE 596
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N W +KYYKGLGTSTSKE KEYF N+ H+ F + +D AI LAFSKK
Sbjct: 597 WK-SANPNHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKK 655
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
+++ RK+WL F P ++L Q Y+ Y+DF+NKELILFS +D +RSIP
Sbjct: 656 QVDDRKEWLTNFMEDRRQRKLLGLPEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIP 715
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
SMVDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 716 SMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFV 775
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 776 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYDDNQRV 835
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ +
Sbjct: 836 EPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKNYK 895
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTIE+ AS + Y + G + +N TT+ I ELPIR WTQ Y+E LE +++ +
Sbjct: 896 GTIEELASNQ----YVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPP 951
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +R+Y DTTV F + ++EE + ++ GL K FKL T+++ ++M LFD G +KKY
Sbjct: 952 LITDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKY 1011
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
DT IL +FF +RL++Y RK+ RFIL ++G+IV+ N+ + +
Sbjct: 1012 DTVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKE 1071
Query: 1080 LLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQS-IDYDYLLSMAI 1136
L+ L Q+G+ P K K + V + + +S ++YLL M +
Sbjct: 1072 LIKVLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESSSPAAESGPTFNYLLDMPL 1131
Query: 1137 GTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEER 1195
LT EK L RD+ +E++ L+K TP LW +DL A ++EL+ +A+ ++E+
Sbjct: 1132 WYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAF---VEELEVVEAKEKQDEQ 1188
Query: 1196 MKIKGNGNGDAGPK 1209
+ + G G G K
Sbjct: 1189 VGLPGKGVKAKGKK 1202
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 266/669 (39%), Positives = 376/669 (56%)
Query: 678 EARKKWLLQFEPGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ R++ LL P ++L Q Y+ Y+DF+NKELILFS +D +RSIPSMVDGLKPGQRK+
Sbjct: 670 DRRQRKLLGL-PEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKV 728
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQ
Sbjct: 729 LFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQ 788
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++EP WY+PIIP VL
Sbjct: 789 FGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYDDNQRVEPEWYIPIIPMVL 848
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGV 916
+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ + GTIE+ AS +
Sbjct: 849 INGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKNYKGTIEELASNQ--- 905
Query: 917 TYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTT 972
Y + G + +N TT+ I ELPIR WTQ Y+E LE +++ + I +R+Y DTT
Sbjct: 906 -YVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTT 964
Query: 973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHI 1032
V F + ++EE + ++ GL K FKL T+++ ++M LFD G +KKYDT IL +FF +
Sbjct: 965 VKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFEL 1024
Query: 1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
RL++Y RK+ RFIL ++G+IV+ N+ + +L+ L Q+G+
Sbjct: 1025 RLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSD 1084
Query: 1093 P-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQS-IDYDYLLSMAIGTLTLEKVQGLLA 1149
P K K + V + + +S ++YLL M + LT EK L
Sbjct: 1085 PVKAWKEAQQKVPEEEENEENEESESESSSPAAESGPTFNYLLDMPLWYLTKEKKDELCK 1144
Query: 1150 DRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEERMKIKGNGNGDAGP 1208
RD+ +E++ L+K TP LW +DL A ++EL+ +A+ ++E++ + G G G
Sbjct: 1145 QRDEKEQELNTLKKKTPSDLWKEDLAAF---VEELEVVEAKEKQDEQVGLPGKGVKAKGK 1201
Query: 1209 KIVAKR---APKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLXXXXXXXXXXXX 1265
K +P R + + RA EA ++ K +G
Sbjct: 1202 KAQISEVLPSPVGKRVIPQVTMEMRA-EAEKKIRRKIKSENVEGTPAEDGAEPGGLRQRL 1260
Query: 1266 XXXXXXXXQRLAKLNEQLA------STKLEPSPDQSGVMETEK--VQVPAKKKEPSKRTA 1317
AK L K P D M + + VP ++KEP R A
Sbjct: 1261 EKRQKREPGTRAKKQTTLPFKPIKKGKKKNPWSDSESDMSSNESNFDVPPREKEP--RIA 1318
Query: 1318 AQKKVVTVE 1326
A K T +
Sbjct: 1319 ATKAKFTAD 1327
Score = 47 (21.6 bits), Expect = 2.3e-282, Sum P(2) = 2.3e-282
Identities = 20/93 (21%), Positives = 36/93 (38%)
Query: 1157 EVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAP 1216
E + + ++ +++ VK L + RA + K N K +A
Sbjct: 1400 ETEPSKPSSKQTVGVKRTITKGQSLTSTAGTKKRAVPKETKSDSALNAHVSKKPAPAKA- 1458
Query: 1217 KNARKNDKKSNNARATEAMGEMDNVTKVVKPKG 1249
KN+RK S+++ +E + KPKG
Sbjct: 1459 KNSRKRKPSSSDSSDSEFEKAISKGATSKKPKG 1491
Score = 39 (18.8 bits), Expect = 1.6e-281, Sum P(2) = 1.6e-281
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 1385 LGQRLLTEMLKPAESSPEKKVRK 1407
+G+R++ ++ + EKK+R+
Sbjct: 1213 VGKRVIPQVTMEMRAEAEKKIRR 1235
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 2712 (959.7 bits), Expect = 3.0e-282, P = 3.0e-282
Identities = 577/1157 (49%), Positives = 758/1157 (65%)
Query: 12 SNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHR 71
S AN ++ ++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ M R
Sbjct: 32 SETANK-NDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCR 89
Query: 72 TISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEE 131
+++VPGLYKIFDEILVNAADNKQRD M +KV ID E ++IS+ N+G G+PV H+ E
Sbjct: 90 EVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVE 149
Query: 132 GVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQV 191
VYVP LIFG LLTSSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + +KQ
Sbjct: 150 KVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQT 209
Query: 192 FTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAG-CLG 250
+ NNM K SE I K +G+++T ++F+PDL+KF M L+ D+VALM +R DLAG C G
Sbjct: 210 WMNNMMKTSEAKI-KHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRG 268
Query: 251 KSVKVELNGHRVPVKSFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQ 302
VKV NG ++PV F YVD+Y K ++ HE NERW++C+TLSE FQQ
Sbjct: 269 --VKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQ 326
Query: 303 VSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDN 361
+SFVN IAT KGG HVDYV +Q +WVF+N LI+N
Sbjct: 327 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIEN 386
Query: 362 PAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDG 420
P FDSQTKE +TL+ SFGSKC+LSE+F K + GIVE++L+W FK L KK
Sbjct: 387 PTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSS 445
Query: 421 TKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGK 480
K ++GI KL+DAN AGG++S +CTLILTEGDSAK+LA++GL V+GRDR+GVFPLRGK
Sbjct: 446 VKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGK 505
Query: 481 LLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLL 540
+LNVREAS Q++ N+EI NI KI+GL+ Y++ +SL+ + ++++
Sbjct: 506 ILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLK----TLRYGKIMI------- 554
Query: 541 WFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK 600
M QD DGSHIKGLLINFIH WPSLLK FL EFITPIVKA+ K
Sbjct: 555 --------------MTDQDQDGSHIKGLLINFIHHNWPSLLK-HGFLEEFITPIVKAS-K 598
Query: 601 NGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWE 660
N + LSFYS+P+++ WK+ + N +W IKYYKGLGTST+KE KEYF ++ H+ F +
Sbjct: 599 NKQELSFYSIPEFDEWKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYA 657
Query: 661 DDQDGEAIELAFSKKKIEARKKWLLQFEPGN-----H-LDQK------EKYIKYSDFVNK 708
+D AI LAFSKKKI+ RK+WL F H L ++ K++ Y+DF+NK
Sbjct: 658 GPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINK 717
Query: 709 ELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGE 768
ELILFS +D +RSIPS+VDG KPGQRK+LF FKRN +E KVAQ +G V+E SAYHHGE
Sbjct: 718 ELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGE 777
Query: 769 QSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXX 828
Q+L TI+ +AQ+FVGSNNINLLQP GQFGTR GGKDAAS RYIFT LS + R LFP
Sbjct: 778 QALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAV 837
Query: 829 XXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLN 888
+L +D Q++EP WY+PIIP VL+NG+EGIGTGW+ +PNY+ R+IV NVRR+L+
Sbjct: 838 DDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 897
Query: 889 GEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE 948
G PM P Y+ F GTI++ + Y V+G I V+ T+ I ELP+R WTQ Y+E
Sbjct: 898 GLDPHPMLPNYKNFKGTIQELGQNQ----YAVSGEIFVVDRNTVEITELPVRTWTQVYKE 953
Query: 949 -FLESII---DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTIST 1004
LE ++ D+ + I +++Y DTTV F V ++EE + + + GL K FKL TT++
Sbjct: 954 QVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTC 1013
Query: 1005 SNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILG 1064
++M LFD G +KKY+T + IL+EFF +RL +Y RK+ RFIL
Sbjct: 1014 NSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILE 1073
Query: 1065 VVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQ 1124
+ G+I + NR + DL+ L Q+G+ P + A D +G
Sbjct: 1074 KIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTP 1133
Query: 1125 S-IDYDYLLSMAIGTLT 1140
S D++Y+L+M++ +LT
Sbjct: 1134 SGPDFNYILNMSLWSLT 1150
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 2681 (948.8 bits), Expect = 2.0e-281, Sum P(2) = 2.0e-281
Identities = 576/1214 (47%), Positives = 774/1214 (63%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ + +R +++VPGLYKIFDE
Sbjct: 28 SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDE 86
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V ID E++LIS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 87 ILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 146
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ + +NMG+ + +
Sbjct: 147 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMEL- 205
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K G+++T ++F+PDL+KF M L+ D+VALM +R D+AG K VKV LNG+R+PVK
Sbjct: 206 KPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST-KDVKVFLNGNRLPVK 264
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
F YVDMY K ++ HE+VN RWE+C+T+SE FQQ+SFVN IAT KGG H
Sbjct: 265 GFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRH 324
Query: 318 VDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX-LWVFVNALIDNPAFDSQTKETLTLRQ 376
VDYVA+Q + VF++ I N + +T
Sbjct: 325 VDYVADQIVSKLVDVVKKKNKGGVAVKAHQVCMCICVFMHKFIKNTELKAPASLLITANM 384
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDA 435
S + F+ K GIVE++L+W FK L KK K ++GI KL+DA
Sbjct: 385 ERSRSSFPNANVFVLKAIG-CGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDA 443
Query: 436 NLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
N AG RNS +CTLILTEGDSAK LA++GL VVGRD++GVFPLRGK+LNVREAS Q++ N
Sbjct: 444 NDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 503
Query: 496 SEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFM 555
+EI NI KI+GL+ Y + SL+ + ++++ M
Sbjct: 504 AEINNIIKIVGLQYKKNYEDEDSLK----TLRYGKIMI---------------------M 538
Query: 556 LAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEA 615
QD DGSHIKGLLINFIH WPSLL+ FL EFITPIVK + KN + ++FYS+P++E
Sbjct: 539 TDQDQDGSHIKGLLINFIHHNWPSLLR-HRFLEEFITPIVKVS-KNKQEIAFYSLPEFEE 596
Query: 616 WKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKK 675
WK S N W +KYYKGLGTSTSKE KEYF N+ H+ F + +D AI LAFSKK
Sbjct: 597 WK-SANPNHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKK 655
Query: 676 KIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQRSIP 723
+++ RK+WL F P ++L Q Y+ Y+DF+NKELILFS +D +RSIP
Sbjct: 656 QVDDRKEWLTNFMEDRRQRKLLGLPEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIP 715
Query: 724 SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
SMVDGLKPGQRK+LF FKRN +E KVAQ +G V+E S+YHHGE SL TI+ +AQ+FV
Sbjct: 716 SMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFV 775
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
GSNN+NLLQP GQFGTR GGKD+AS RYIFT LSP+ R LFP +L +D Q++
Sbjct: 776 GSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYDDNQRV 835
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY+PIIP VL+NG+EGIGTGWS IPN++ R++V N+RRLL+GE PM P Y+ +
Sbjct: 836 EPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKNYK 895
Query: 904 GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS--- 959
GTIE+ AS + Y + G + +N TT+ I ELPIR WTQ Y+E LE +++ +
Sbjct: 896 GTIEELASNQ----YVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPP 951
Query: 960 FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY 1019
I +R+Y DTTV F + ++EE + ++ GL K FKL T+++ ++M LFD G +KKY
Sbjct: 952 LITDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKY 1011
Query: 1020 DTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTD 1079
DT IL +FF +RL++Y RK+ RFIL ++G+IV+ N+ + +
Sbjct: 1012 DTVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKE 1071
Query: 1080 LLLELRQKGFTPFP-KNSKSIEAVVAGATDXXXXXXXXXXVVN-GVQS-IDYDYLLSMAI 1136
L+ L Q+G+ P K K + V + + +S ++YLL M +
Sbjct: 1072 LIKVLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESSSPAAESGPTFNYLLDMPL 1131
Query: 1137 GTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA-EEER 1195
LT EK L RD+ +E++ L+K TP LW +DL A ++EL+ +A+ ++E+
Sbjct: 1132 WYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAF---VEELEVVEAKEKQDEQ 1188
Query: 1196 MKIKGNGNGDAGPK 1209
+ + G G G K
Sbjct: 1189 VGLPGKGVKAKGKK 1202
Score = 47 (21.6 bits), Expect = 2.0e-281, Sum P(2) = 2.0e-281
Identities = 20/93 (21%), Positives = 36/93 (38%)
Query: 1157 EVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAP 1216
E + + ++ +++ VK L + RA + K N K +A
Sbjct: 1398 ETEPSKPSSKQTVGVKRTITKGQSLTSTAGTKKRAVPKETKSDSALNAHVSKKPAPAKA- 1456
Query: 1217 KNARKNDKKSNNARATEAMGEMDNVTKVVKPKG 1249
KN+RK S+++ +E + KPKG
Sbjct: 1457 KNSRKRKPSSSDSSDSEFEKAISKGATSKKPKG 1489
Score = 42 (19.8 bits), Expect = 6.9e-281, Sum P(2) = 6.9e-281
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 1287 KLEPSPDQSGVMETEK--VQVPAKKKEPSKRTAAQKKVVTVE 1326
K P D M + + VP ++KEP R AA K T +
Sbjct: 1286 KKNPWSDSESDMSSNESNFDVPPREKEP--RIAATKAKFTAD 1325
Score = 39 (18.8 bits), Expect = 1.4e-280, Sum P(2) = 1.4e-280
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 1385 LGQRLLTEMLKPAESSPEKKVRK 1407
+G+R++ ++ + EKK+R+
Sbjct: 1213 VGKRVIPQVTMEMRAEAEKKIRR 1235
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 1373 (488.4 bits), Expect = 1.1e-278, Sum P(3) = 1.1e-278
Identities = 316/782 (40%), Positives = 444/782 (56%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGK--VLSFYSMPD 612
M QDHDGSHIKGLLINF S +P LL IP FL+EFITPI+K T K V+ FY++PD
Sbjct: 531 MTDQDHDGSHIKGLLINFFESTFPGLLDIPGFLIEFITPIMKVTILKPKKQVIPFYNLPD 590
Query: 613 YEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAF 672
YE W+++ + W KYYKGLGTS+ +E +EYF + +H K F + D I+LAF
Sbjct: 591 YEKWRDT-ESHKYVWKTKYYKGLGTSSFQEAREYFSALDVHIKKFHSLNPDDSSLIDLAF 649
Query: 673 SKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPG 732
SKKK + RK+WL Q+EPG LD I+ DF+NKELILFS+AD RSIP ++DGLKP
Sbjct: 650 SKKKADDRKEWLRQYEPGTVLDPHLTEIQIGDFINKELILFSLADNLRSIPHLLDGLKPS 709
Query: 733 QRKILFCSFKRNFIK-EAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLL 791
QRK++F SFKRN +K E KV + + YVS +AYHH EQSL TI+ +AQDFVG+NNI LL
Sbjct: 710 QRKVIFGSFKRNIMKTEIKVQELAAYVSGQTAYHHTEQSLVQTIVSLAQDFVGANNIYLL 769
Query: 792 QPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPI 851
P G FGTR GGKDAA+ARYIFT+L+ I++ +F Y+ +D + +EP WY+P
Sbjct: 770 MPRGAFGTRATGGKDAAAARYIFTQLNSISKHVFNPLDNPLLTYVQDDEKTVEPEWYVPA 829
Query: 852 IPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTAS 911
+P VLVNG+EGIGTGWS+ IP +NP DIV N+R+L+ G+ + M PW+RG+ GT++K +
Sbjct: 830 LPMVLVNGAEGIGTGWSTSIPPFNPIDIVNNLRKLMRGDEPDDMAPWFRGWNGTMQKIDA 889
Query: 912 KEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDS---FIRGFRQYS 968
+ Y + G IE+V E T+ I ELP R WT +E L + N+ +++ ++
Sbjct: 890 QR----YRIFGRIEQVGENTVEITELPARTWTTTIKEHLLLALSGNERTKPWVKDMQE-Q 944
Query: 969 DDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEE 1028
T+ F V L+ E M RT++ G ++FKL +T+S SNM LFD+ IKKY+ ++IL +
Sbjct: 945 HGATIKFVVTLTPEEMERTRKIGFYERFKLISTVSLSNMVLFDAHNKIKKYNDVKEILTD 1004
Query: 1029 FFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKG 1088
FF++RLEFY+KRK V+FI +++ E+ V + R+ L+ EL G
Sbjct: 1005 FFYVRLEFYQKRKDYMIERLQWQLEKLSFQVKFIKMIIDEELRVTKKARSVLMKELESLG 1064
Query: 1089 FT-------P-FPKNSKSIEAVVAG-------ATDXXXXXXXXXXVVNG-VQSID-YDYL 1131
F P F K + +E + A D VV G ++ Y+YL
Sbjct: 1065 FPRVDAEGKPHFEKIDEDLEEMDASDPEEFAEELDEQGGEVADENVVVGPLEKFGTYEYL 1124
Query: 1132 LSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA 1191
L M I +LT EK + LL ++ E+ +L + + LW DLD + +E K D
Sbjct: 1125 LGMKIWSLTKEKYERLLREKQNKEAELQELLGKSAKDLWNADLDMFVREYEEFIKYDTEV 1184
Query: 1192 EEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRA 1251
+ ++ G+ K+ K K A K+D N ++ A + + K +P R
Sbjct: 1185 RDGTIRAVGS-------KVKGK---KRAHKDDDDYNPSKKKPAKSSVKKL-KTEQPVERI 1233
Query: 1252 GLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQLASTKLEPSP-DQSGVMETEKVQVPAKKK 1310
L K ++ K P+P +S + KV P K+
Sbjct: 1234 LLEPPTQEQVKKPAK----------VKTETNVSIPKQTPTPKSKSASASSSKVPTPLSKQ 1283
Query: 1311 EP 1312
EP
Sbjct: 1284 EP 1285
Score = 753 (270.1 bits), Expect = 1.1e-278, Sum P(3) = 1.1e-278
Identities = 136/256 (53%), Positives = 191/256 (74%)
Query: 25 KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFD 84
K E YQK +QLEHIL RPDTYIGS+E +W+++ E M+ + ++ VPGL+KIFD
Sbjct: 9 KNASETYQKITQLEHILKRPDTYIGSVEMQDFHMWVHDAEMDCMVEKQVNIVPGLFKIFD 68
Query: 85 EILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLL 144
EI+VNAADNK RDP M ++VVI++E + I V N G+G+P+E+H +EG+Y+PELIFGHLL
Sbjct: 69 EIIVNAADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAKEGIYIPELIFGHLL 128
Query: 145 TSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNI 204
TSSNYDDN KK TGGRNGYGAKL NIFSTEFI+ET+D K +KY Q + +NM P I
Sbjct: 129 TSSNYDDNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSGQKYVQKWESNMNVCHPPKI 188
Query: 205 SKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPV 264
+ K+G ++TK++FKPDL +F M L+DD++ +M++RV D+ G + + V V LNG + +
Sbjct: 189 TSYKKGPSYTKITFKPDLQRFGMEVLDDDILGVMRRRVYDINGSV-RDVNVSLNGKSLKI 247
Query: 265 KSFAEYVDMYPKSVTR 280
++F Y+++Y +S+ +
Sbjct: 248 RNFKSYMELYMRSLEK 263
Score = 594 (214.2 bits), Expect = 1.1e-278, Sum P(3) = 1.1e-278
Identities = 122/254 (48%), Positives = 167/254 (65%)
Query: 279 TRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXX 338
T +E+VN+RWE+ +S+ FQQ+SFVN IAT GGTHV+Y+ +Q
Sbjct: 284 TILYEKVNDRWELGFAVSDISFQQISFVNSIATTSGGTHVNYLTDQIVKKVSELLSKKKK 343
Query: 339 XXXXXXXXXXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSG 398
+++F+N LI+NPAF SQTKE LT R FGSKCE+S +F+ K+ K+
Sbjct: 344 TVKPFQIRNN--IFIFINCLIENPAFTSQTKEQLTTRVRDFGSKCEVSSDFINKIM-KTE 400
Query: 399 IVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKA 458
+ + A+ +K LK+ DGT+ + KLEDAN AG + +CTL+LTEGDSA +
Sbjct: 401 LATKIFEIADENAAKLLKQTDGTRKNRITDYPKLEDANKAGTKEGHKCTLVLTEGDSALS 460
Query: 459 LAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYN--NV 516
LA+AGLSVVGRD +G FPL+GK+LNVR+AS Q+ N+EI IKKI+GL+ +Y ++
Sbjct: 461 LAVAGLSVVGRDYYGCFPLKGKILNVRDASVEQIRKNTEIQAIKKIMGLQHKKQYTIEDM 520
Query: 517 KSLRYGHLMIMTDQ 530
K+LRYGH+MIMTDQ
Sbjct: 521 KTLRYGHVMIMTDQ 534
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 2620 (927.3 bits), Expect = 6.5e-276, Sum P(2) = 6.5e-276
Identities = 585/1273 (45%), Positives = 784/1273 (61%)
Query: 19 GPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQA--LWIYEEESKTMIHRTISYV 76
G + IE++YQKKSQLEHILLRPDTYIGS+E HT+ +W+Y E + R ISYV
Sbjct: 55 GGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVE-HTEKTPMWVYNMEESKLEQRDISYV 113
Query: 77 PGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVP 136
PGLYKI+DEILVNAADNKQRDPKM+ +K+ I++E + ISV+N+G G+PV H+ E VYVP
Sbjct: 114 PGLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYVP 173
Query: 137 ELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNM 196
ELIFG LLTSSNY+D+ KK TGGRNGYGAKL NIFST+F +ET+ +KQ + NM
Sbjct: 174 ELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSRDYKSAFKQTWIKNM 233
Query: 197 GKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVE 256
+ EP I K + D +TK++F PDLAKF M L+DD+ LM +R D+AG K V V
Sbjct: 234 TRDEEPKIVKSTDED-FTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGS-SKGVAVF 291
Query: 257 LNGHRVPVKSFAEYVDMYPKSVTR-------FHERVNERWEICVTLSEGQFQQVSFVNGI 309
LNG R+P+K F +YV MY +E+V +RW++ + LSE FQQVSFVN I
Sbjct: 292 LNGKRIPIKGFEDYVQMYTSQFNNEGEPLKIAYEQVGDRWQVALALSEKGFQQVSFVNSI 351
Query: 310 ATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXX--XXXXXLWVFVNALIDNPAFDSQ 367
AT KGG HVDYVA+Q +WVFVN LI+NP FDSQ
Sbjct: 352 ATTKGGRHVDYVADQMVAKFIDSIKRKLTKTSMNIKPFQIKNHMWVFVNCLIENPTFDSQ 411
Query: 368 TKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDV 426
TKET+TL+Q FGS C LSE+F K + GI + ++SW FKQ DL KK TKT +
Sbjct: 412 TKETMTLQQKQFGSTCVLSEKF-SKAASSVGITDAVMSWVRFKQMDDLNKKCSKTKTSKL 470
Query: 427 RGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVRE 486
+GI KLEDAN AG +NS+QCTLILTEGDSAK LA++GLSVVGRD++GVFPLRGKLLNVRE
Sbjct: 471 KGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPLRGKLLNVRE 530
Query: 487 ASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIF 546
+ Q+ +N+E+ + KILGL+ +Y + + ++++
Sbjct: 531 GNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK----TLRYGKLMV------------- 573
Query: 547 AWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLS 606
M QD DGSHIKGL+INFIH FWPSL++ +F+ EFITPIVKAT K + +S
Sbjct: 574 --------MADQDQDGSHIKGLVINFIHHFWPSLIQ-RNFVEEFITPIVKAT-KGKEEVS 623
Query: 607 FYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGE 666
FYS+P+Y W+ + N S+ IKYYKGLGTSTSKE KEYF ++ H+ F + D
Sbjct: 624 FYSLPEYSEWRMNTD-NWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHRIRFKYNGADDDN 682
Query: 667 AIELAFSKKKIEARKKWLLQF--------EPG---NHLDQKE-KYIKYSDFVNKELILFS 714
A+++AFSKKKIE RK WL ++ + G +L K+ +++ + DFVN+EL+LFS
Sbjct: 683 AVDMAFSKKKIEERKDWLSKWMREKKDRKQQGLAEEYLYNKDTRFVTFKDFVNRELVLFS 742
Query: 715 MADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLAST 774
D +RSIP +VDG KPGQRK+LF FKR +E KVAQ +G V+E SAYHHGEQSL T
Sbjct: 743 NLDNERSIPCLVDGFKPGQRKVLFACFKRADKREVKVAQLAGAVAEISAYHHGEQSLMGT 802
Query: 775 ILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXX 834
I+ +AQD+VGSNNINLL P GQFGTR QGGKD+ASARYIFT+LSP+TR LFP
Sbjct: 803 IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRTLFPAHDDNVLR 862
Query: 835 YLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEP 894
+L E+ Q+IEP WY PIIP VLVNG++GIGTGWS+ IPNYNPR++V N++RL+ GE +
Sbjct: 863 FLYEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKA 922
Query: 895 MHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESI 953
+ PWY+ F G I + + G + +++ T+ I ELPI++WTQDY+E LE +
Sbjct: 923 LAPWYKNFRGKIIQIDPSR----FACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGL 978
Query: 954 IDQNDS---FIRGFRQYSDDTTVDFEVFLSEESMMRTKQ-EGLLKKFKLTTTISTSNMHL 1009
++ +D I +++Y DTTV F V LS + ++ + L + FKL I+T+ M L
Sbjct: 979 MESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVL 1038
Query: 1010 FDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGE 1069
FD+ G ++ Y +PE I +EF+ R E Y +RK+ RFIL +N E
Sbjct: 1039 FDAAGCLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTNQARFILAKINNE 1098
Query: 1070 IVVNNRKRT---DLLLELRQKGFTPFPK---NSKSIEAVVAGATDXXXXXXXXXXV---- 1119
IV+ N+K+ D+L++++ P K K E +G + V
Sbjct: 1099 IVLENKKKAAIVDVLIKMKFDA-DPVKKWKEEQKLKELRESGEIELDEDDLAAVAVEEDE 1157
Query: 1120 -----VNGVQSIDYDYLLSMAIGTLTL-EKVQGLLADRDKLNEEVDDLRKATPESLWVKD 1173
V++ DY + + + L E+ + L + E++ ++R + W +D
Sbjct: 1158 AISSAAKAVETKLSDYDYLVGMALIKLSEEEKNKLIKESE--EKMAEVR-VIEKKTW-QD 1213
Query: 1174 L--DALDMQLDELDKSDARAEEER-MKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNAR 1230
L + LD + ELDK +AR + ++ IK A + KN S + +
Sbjct: 1214 LWHEDLDNFVSELDKQEAREKADQDASIKNAAKKLAADAKTGRGPKKNVCTEVLPSKDGQ 1273
Query: 1231 ATEAMGEMDNVTK 1243
E M +D TK
Sbjct: 1274 RIEPM--LDAATK 1284
Score = 56 (24.8 bits), Expect = 6.5e-276, Sum P(2) = 6.5e-276
Identities = 36/149 (24%), Positives = 52/149 (34%)
Query: 1186 KSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAM---------- 1235
K + + +E K+K G D K ++ APK A+K N+ +E
Sbjct: 1299 KKEPKEPKEPKKVKKEGQ-DI-KKFMSPAAPKTAKKEKSDGFNSDMSEESDVEFDEGIDF 1356
Query: 1236 -GEMDNVTK---VVKPKGRAGLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQLASTKLEPS 1291
+ D V + V KPK R G AK K E S
Sbjct: 1357 DSDDDGVEREDVVSKPKPRTGKGAAKAEVIDLSDDDEVPAKKPAPAK-KAAPKKKKSEFS 1415
Query: 1292 PDQSGVMETEKVQVPAKKKEPSKRTAAQK 1320
G + E + P+ K+PS + AA K
Sbjct: 1416 DLSGGDSDEEAEKKPSTSKKPSPKKAAPK 1444
Score = 54 (24.1 bits), Expect = 1.1e-275, Sum P(2) = 1.1e-275
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 1304 QVPAKKKEPSKRTAAQKK 1321
+VPAKK P+K+ A +KK
Sbjct: 1393 EVPAKKPAPAKKAAPKKK 1410
Score = 46 (21.3 bits), Expect = 7.4e-275, Sum P(2) = 7.4e-275
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 1185 DKSDARAEEERMKIKGNGNGDAGPKIVAKRA-PKNARKND----KKSNNARATEAMGEMD 1239
D S ++EE K + K K A PK+ D K N +A + E D
Sbjct: 1416 DLSGGDSDEEAEKKPSTSKKPSPKKAAPKTAEPKSKAVTDFFGASKKNGKKAAGSDDE-D 1474
Query: 1240 NVTKVVKPKGRAG 1252
+ + VV P+ ++G
Sbjct: 1475 DESFVVAPREKSG 1487
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 2620 (927.3 bits), Expect = 6.5e-276, Sum P(2) = 6.5e-276
Identities = 585/1273 (45%), Positives = 784/1273 (61%)
Query: 19 GPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQA--LWIYEEESKTMIHRTISYV 76
G + IE++YQKKSQLEHILLRPDTYIGS+E HT+ +W+Y E + R ISYV
Sbjct: 55 GGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVE-HTEKTPMWVYNMEESKLEQRDISYV 113
Query: 77 PGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVP 136
PGLYKI+DEILVNAADNKQRDPKM+ +K+ I++E + ISV+N+G G+PV H+ E VYVP
Sbjct: 114 PGLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYVP 173
Query: 137 ELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNM 196
ELIFG LLTSSNY+D+ KK TGGRNGYGAKL NIFST+F +ET+ +KQ + NM
Sbjct: 174 ELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSRDYKSAFKQTWIKNM 233
Query: 197 GKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVE 256
+ EP I K + D +TK++F PDLAKF M L+DD+ LM +R D+AG K V V
Sbjct: 234 TRDEEPKIVKSTDED-FTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGS-SKGVAVF 291
Query: 257 LNGHRVPVKSFAEYVDMYPKSVTR-------FHERVNERWEICVTLSEGQFQQVSFVNGI 309
LNG R+P+K F +YV MY +E+V +RW++ + LSE FQQVSFVN I
Sbjct: 292 LNGKRIPIKGFEDYVQMYTSQFNNEGEPLKIAYEQVGDRWQVALALSEKGFQQVSFVNSI 351
Query: 310 ATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXX--XXXXXLWVFVNALIDNPAFDSQ 367
AT KGG HVDYVA+Q +WVFVN LI+NP FDSQ
Sbjct: 352 ATTKGGRHVDYVADQMVAKFIDSIKRKLTKTSMNIKPFQIKNHMWVFVNCLIENPTFDSQ 411
Query: 368 TKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDV 426
TKET+TL+Q FGS C LSE+F K + GI + ++SW FKQ DL KK TKT +
Sbjct: 412 TKETMTLQQKQFGSTCVLSEKF-SKAASSVGITDAVMSWVRFKQMDDLNKKCSKTKTSKL 470
Query: 427 RGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVRE 486
+GI KLEDAN AG +NS+QCTLILTEGDSAK LA++GLSVVGRD++GVFPLRGKLLNVRE
Sbjct: 471 KGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPLRGKLLNVRE 530
Query: 487 ASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIF 546
+ Q+ +N+E+ + KILGL+ +Y + + ++++
Sbjct: 531 GNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK----TLRYGKLMV------------- 573
Query: 547 AWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLS 606
M QD DGSHIKGL+INFIH FWPSL++ +F+ EFITPIVKAT K + +S
Sbjct: 574 --------MADQDQDGSHIKGLVINFIHHFWPSLIQ-RNFVEEFITPIVKAT-KGKEEVS 623
Query: 607 FYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGE 666
FYS+P+Y W+ + N S+ IKYYKGLGTSTSKE KEYF ++ H+ F + D
Sbjct: 624 FYSLPEYSEWRMNTD-NWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHRIRFKYNGADDDN 682
Query: 667 AIELAFSKKKIEARKKWLLQF--------EPG---NHLDQKE-KYIKYSDFVNKELILFS 714
A+++AFSKKKIE RK WL ++ + G +L K+ +++ + DFVN+EL+LFS
Sbjct: 683 AVDMAFSKKKIEERKDWLSKWMREKKDRKQQGLAEEYLYNKDTRFVTFKDFVNRELVLFS 742
Query: 715 MADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLAST 774
D +RSIP +VDG KPGQRK+LF FKR +E KVAQ +G V+E SAYHHGEQSL T
Sbjct: 743 NLDNERSIPCLVDGFKPGQRKVLFACFKRADKREVKVAQLAGAVAEISAYHHGEQSLMGT 802
Query: 775 ILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXX 834
I+ +AQD+VGSNNINLL P GQFGTR QGGKD+ASARYIFT+LSP+TR LFP
Sbjct: 803 IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRTLFPAHDDNVLR 862
Query: 835 YLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEP 894
+L E+ Q+IEP WY PIIP VLVNG++GIGTGWS+ IPNYNPR++V N++RL+ GE +
Sbjct: 863 FLYEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKA 922
Query: 895 MHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESI 953
+ PWY+ F G I + + G + +++ T+ I ELPI++WTQDY+E LE +
Sbjct: 923 LAPWYKNFRGKIIQIDPSR----FACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGL 978
Query: 954 IDQNDS---FIRGFRQYSDDTTVDFEVFLSEESMMRTKQ-EGLLKKFKLTTTISTSNMHL 1009
++ +D I +++Y DTTV F V LS + ++ + L + FKL I+T+ M L
Sbjct: 979 MESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVL 1038
Query: 1010 FDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGE 1069
FD+ G ++ Y +PE I +EF+ R E Y +RK+ RFIL +N E
Sbjct: 1039 FDAAGCLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTNQARFILAKINNE 1098
Query: 1070 IVVNNRKRT---DLLLELRQKGFTPFPK---NSKSIEAVVAGATDXXXXXXXXXXV---- 1119
IV+ N+K+ D+L++++ P K K E +G + V
Sbjct: 1099 IVLENKKKAAIVDVLIKMKFDA-DPVKKWKEEQKLKELRESGEIELDEDDLAAVAVEEDE 1157
Query: 1120 -----VNGVQSIDYDYLLSMAIGTLTL-EKVQGLLADRDKLNEEVDDLRKATPESLWVKD 1173
V++ DY + + + L E+ + L + E++ ++R + W +D
Sbjct: 1158 AISSAAKAVETKLSDYDYLVGMALIKLSEEEKNKLIKESE--EKMAEVR-VIEKKTW-QD 1213
Query: 1174 L--DALDMQLDELDKSDARAEEER-MKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNAR 1230
L + LD + ELDK +AR + ++ IK A + KN S + +
Sbjct: 1214 LWHEDLDNFVSELDKQEAREKADQDASIKNAAKKLAADAKTGRGPKKNVCTEVLPSKDGQ 1273
Query: 1231 ATEAMGEMDNVTK 1243
E M +D TK
Sbjct: 1274 RIEPM--LDAATK 1284
Score = 56 (24.8 bits), Expect = 6.5e-276, Sum P(2) = 6.5e-276
Identities = 36/149 (24%), Positives = 52/149 (34%)
Query: 1186 KSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAM---------- 1235
K + + +E K+K G D K ++ APK A+K N+ +E
Sbjct: 1299 KKEPKEPKEPKKVKKEGQ-DI-KKFMSPAAPKTAKKEKSDGFNSDMSEESDVEFDEGIDF 1356
Query: 1236 -GEMDNVTK---VVKPKGRAGLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQLASTKLEPS 1291
+ D V + V KPK R G AK K E S
Sbjct: 1357 DSDDDGVEREDVVSKPKPRTGKGAAKAEVIDLSDDDEVPAKKPAPAK-KAAPKKKKSEFS 1415
Query: 1292 PDQSGVMETEKVQVPAKKKEPSKRTAAQK 1320
G + E + P+ K+PS + AA K
Sbjct: 1416 DLSGGDSDEEAEKKPSTSKKPSPKKAAPK 1444
Score = 54 (24.1 bits), Expect = 1.1e-275, Sum P(2) = 1.1e-275
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 1304 QVPAKKKEPSKRTAAQKK 1321
+VPAKK P+K+ A +KK
Sbjct: 1393 EVPAKKPAPAKKAAPKKK 1410
Score = 46 (21.3 bits), Expect = 7.4e-275, Sum P(2) = 7.4e-275
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 1185 DKSDARAEEERMKIKGNGNGDAGPKIVAKRA-PKNARKND----KKSNNARATEAMGEMD 1239
D S ++EE K + K K A PK+ D K N +A + E D
Sbjct: 1416 DLSGGDSDEEAEKKPSTSKKPSPKKAAPKTAEPKSKAVTDFFGASKKNGKKAAGSDDE-D 1474
Query: 1240 NVTKVVKPKGRAG 1252
+ + VV P+ ++G
Sbjct: 1475 DESFVVAPREKSG 1487
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 2547 (901.6 bits), Expect = 5.5e-271, Sum P(3) = 5.5e-271
Identities = 573/1249 (45%), Positives = 764/1249 (61%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+++E+ R +++VPGLYKIFDE
Sbjct: 26 SVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVGLNC-RDVTFVPGLYKIFDE 84
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRD M +KV ID E++ ISV N+G G+PV H+ E VYVP LIFG LLT
Sbjct: 85 ILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLT 144
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK TGGRNGYGAKL NIFST+F +ETA + K +KQ +T+NMGK E +
Sbjct: 145 SSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTLK 204
Query: 206 KCKEGDNWTKV------SFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCL-GKSVKVELN 258
D FK + ++ L + D+ L GK + V+
Sbjct: 205 HFDGEDYTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAGSTKDVKVFLNGKRLPVK-- 262
Query: 259 GHRVPVKSFA-EYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIK---- 313
G R V + + VD ++ HE VN RWE+C+TLSE FQQVSFVN IAT K
Sbjct: 263 GFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGFQQVSFVNSIATTKSHSL 322
Query: 314 ---------------------GGTHVDYVANQXXXXXXXXXXXXXXXXXXXX-XXXXXXL 351
GG HVDYVA+Q +
Sbjct: 323 HILCYWHCVLFHWKHLKLFGPGGRHVDYVADQIVTKLIDVVKKKNKNGVGVKPFQVKNHM 382
Query: 352 WVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQ 411
W+FVN+LI+NP FDSQTKE +TL+ SFGS C+LSE+F+K GIVE++L+W FK
Sbjct: 383 WIFVNSLIENPTFDSQTKENMTLQAKSFGSTCKLSEKFIKGAVG-CGIVESILNWVKFKA 441
Query: 412 SKDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRD 470
L KK K ++G+ KL+DAN AG +NS CTLILTEGDSAK LA++GL VVGRD
Sbjct: 442 QTQLNKKCSAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRD 501
Query: 471 RFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQ 530
++GVFPLRGK+LNVREAS Q++ N+EI NI KI+GL+ Y + +SL+
Sbjct: 502 KYGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLK---------- 551
Query: 531 VLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEF 590
S I+I M QD DGSHIKGLLINFIH WPSLL+ +FL EF
Sbjct: 552 ------SLRYGKIMI---------MTDQDQDGSHIKGLLINFIHHNWPSLLR-HNFLEEF 595
Query: 591 ITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNI 650
ITPI+K + KN + + FYS+P++E WK S N +SW IKYYKGLGTSTSKE KEYF ++
Sbjct: 596 ITPIIKVS-KNKEEIPFYSIPEFEEWKSSTQ-NYNSWKIKYYKGLGTSTSKEAKEYFADM 653
Query: 651 TLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFE-----------PGNHLDQKE-K 698
H+ F + +D AI LAFSKKK+E RK+WL F P ++L K+
Sbjct: 654 ARHRIGFKYSGPEDDAAITLAFSKKKVEERKEWLTNFMEDRRQRKLHGLPEDYLYGKDTN 713
Query: 699 YIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 758
Y+ Y+DF+NKEL+LFS +D +RSIPS+VDGLKPGQRK+LF FKRN +E KVAQ +G V
Sbjct: 714 YLTYNDFINKELVLFSNSDNERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSV 773
Query: 759 SEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLS 818
+E S+YHHGE SL TI+ +AQ+FVGSNN+NLLQP GQFGTR GGKD+AS RYIFT LS
Sbjct: 774 AEMSSYHHGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLS 833
Query: 819 PITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRD 878
P+ R LFP +L +D Q++EP WYMPIIP VL+NG+EGIGTGWS IPN++ R+
Sbjct: 834 PLARLLFPPVDDNVLRFLYDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRE 893
Query: 879 IVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELP 938
V N+R LL+G+ PM P Y+ F GTI++ + Y ++G + ++ TT+ I ELP
Sbjct: 894 TVNNIRCLLDGKEPLPMLPSYKNFKGTIDELGPNQ----YVISGEVSILDSTTIEITELP 949
Query: 939 IRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLK 994
+R WTQ Y+E LE +++ + I +++Y DTTV F V +SEE + + GL K
Sbjct: 950 VRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHK 1009
Query: 995 KFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXX 1054
FKL T ++ ++M LFD G +KKY++P+ IL+EFF +RL +Y RK+
Sbjct: 1010 VFKLQTNLTCNSMVLFDHVGFLKKYESPQDILKEFFELRLRYYGLRKEWLIGMLGAESAK 1069
Query: 1055 XXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP-KNSKSIE--AVVAGATDXXX 1111
RFIL ++G+IV+ N+ + +L+ L Q+G+ P K K ++ A++ +
Sbjct: 1070 LNNQARFILEKIDGKIVIENKPKKELIQVLIQRGYESDPVKAWKELQNKAIIPSVSISEE 1129
Query: 1112 XXXXXXXVVNGVQSI--DYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESL 1169
+ D++YLL+M + LT EK L RD ++E++DL+ +P L
Sbjct: 1130 EEEGDESGEESAAATGPDFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLKHKSPSDL 1189
Query: 1170 WVKDLDALDMQLDELDKSDARAEE-----ERMKIKGNGNGDAGPKIVAK 1213
W +DL A +LD ++ + E + +K+KG G G + V K
Sbjct: 1190 WKEDLAAFVEELDAVEAKQMQDEMAGITGKPLKVKGGKQG--GKQKVTK 1236
Score = 52 (23.4 bits), Expect = 5.5e-271, Sum P(3) = 5.5e-271
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 1287 KLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
K P D E++ +VP+K++ ++ AA+ K + SD+
Sbjct: 1326 KRNPWSDSESDSESDDFEVPSKRERVVRQAAAKIKPMVNSDSDA 1369
Score = 48 (22.0 bits), Expect = 5.5e-271, Sum P(3) = 5.5e-271
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1186 KSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARAT 1232
KS+ +E+ + GN +GD P + +R + RK ++ R T
Sbjct: 1272 KSEKNESDEKQE--GNSSGDKEPSSLKQRLAQK-RKAEQGKRTKRQT 1315
Score = 44 (20.5 bits), Expect = 6.4e-267, Sum P(2) = 6.4e-267
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 1278 KLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETS 1328
++ +++ S K E Q G +K K++ KR A Q K +T+
Sbjct: 1266 RIKKKIKSEKNESDEKQEGNSSGDKEPSSLKQRLAQKRKAEQGKRTKRQTT 1316
Score = 43 (20.2 bits), Expect = 4.9e-270, Sum P(3) = 4.9e-270
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 1279 LNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
L ++ A+ K + + +E AKK P + A K++ + SDS
Sbjct: 1475 LTKKKAAPKAPRAAQREESPPSEATAAVAKKPGPPRGRKATKRLTSSSDSDS 1526
Score = 42 (19.8 bits), Expect = 1.0e-266, Sum P(2) = 1.0e-266
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1388 RLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLG 1422
R+ EM AE +KK++ + K+ G+ G
Sbjct: 1254 RVTAEMKAEAEKRIKKKIKSEKNESDEKQEGNSSG 1288
Score = 40 (19.1 bits), Expect = 1.7e-266, Sum P(2) = 1.7e-266
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 1369 ETKKRGPAKKQQPEASLGQRLLTEM-------LKPAESSPEKKVRKMRASPFN 1414
+ K+ G + + +SL QRL + K + P K ++KM+ +P++
Sbjct: 1279 DEKQEGNSSGDKEPSSLKQRLAQKRKAEQGKRTKRQTTLPFKPIKKMKRNPWS 1331
Score = 37 (18.1 bits), Expect = 7.1e-269, Sum P(3) = 7.1e-269
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 1178 DMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGE 1237
D + D + D +R ++ P +V + + +D+ S +E +
Sbjct: 1332 DSESDS-ESDDFEVPSKRERVVRQAAAKIKP-MVNSDSDADLTSSDEDSEYQENSEGNTD 1389
Query: 1238 MDNVTKVVKPKGRA 1251
D +K PK +A
Sbjct: 1390 SDTTSKKKPPKAKA 1403
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 1249 (444.7 bits), Expect = 4.2e-251, Sum P(4) = 4.2e-251
Identities = 250/537 (46%), Positives = 352/537 (65%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M QDHDGSHIKGL++NFIH FWP+LLK FLVEF+TPI+KAT + + SF+++ DYE
Sbjct: 644 MADQDHDGSHIKGLVMNFIHYFWPNLLK-RGFLVEFVTPIIKATKSSTQKKSFFTIKDYE 702
Query: 615 AWKESLGGNA-SSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFS 673
W+E++ + ++IKYYKGLGTSTS E KEYF N+ H F+W D+ D + I++AF+
Sbjct: 703 KWRETISSDQLKQYTIKYYKGLGTSTSAEAKEYFSNLDKHVIKFIWGDEAD-DLIKMAFA 761
Query: 674 KKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQ 733
K R++W+ + + +D K I Y DF+NKELI +S A RSIPS++DGLKPGQ
Sbjct: 762 KDLSSLRQRWIKETDMSQGIDHSIKEITYPDFINKELIHYSWAANLRSIPSLIDGLKPGQ 821
Query: 734 RKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQP 793
RKILF SFKR E KV+Q SGYV+E ++YHHGEQSL STI+ MA +FVGSNN+ LL P
Sbjct: 822 RKILFASFKRRLTNEIKVSQLSGYVAEQTSYHHGEQSLNSTIVKMAHNFVGSNNLPLLTP 881
Query: 794 NGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIP 853
+GQFGTR QGG D+ASARYIFT+L P+ R+LF YL E+G+ I+P +Y+PIIP
Sbjct: 882 SGQFGTRLQGGSDSASARYIFTKLEPVARYLFNELDDPLLNYLEEEGESIQPDYYIPIIP 941
Query: 854 TVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEM-MEPMHPWYRGFGGTIEKTASK 912
+LVNGSEGIG G S+ IP ++P DI+ + LN ++ ++ + PWYRGF GTI
Sbjct: 942 MLLVNGSEGIGVGMSTSIPLFSPIDIIDQLMLRLNNQVALKKLIPWYRGFKGTISPDRH- 1000
Query: 913 EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTT 972
TY G+I+ V L I ELPI RWT DY+E L +ID++ I+ F++ + + +
Sbjct: 1001 ----TYRTNGVIKLVGRN-LEITELPIGRWTSDYKEVLNDLIDKD--VIKSFQESNTENS 1053
Query: 973 VDFEVFLSE---ESMMRTKQEGLLKKFKLTTTISTSNMHL--FDSKGVIKKYDTPEQILE 1027
V F + L+ E M + L+K FKL+ ++ N HL FD I+K ++ E+I++
Sbjct: 1054 VHFTILLNNNQLEQMEDLTENELIKLFKLSASL---NFHLTCFDENSKIQKLESVEEIID 1110
Query: 1028 EFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLEL 1084
+F+ +RL+FY KR++ ++F+ + +G++ + R + DL+ EL
Sbjct: 1111 QFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDLIKEL 1167
Score = 589 (212.4 bits), Expect = 4.2e-251, Sum P(4) = 4.2e-251
Identities = 129/266 (48%), Positives = 170/266 (63%)
Query: 272 DMYPKSVTRFHERVNERWEICVTLSE-GQFQQVSFVNGIATIKGGTHVDYVANQXXXXXX 330
+ Y + F E ++ RW+I + LSE GQF QVSFVN I T+KGGTHV+++A+Q
Sbjct: 383 EQYREESFEFGE-ISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVRYVG 441
Query: 331 XXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFL 390
L +FVN L+DNP+FDSQ+KETLT + FGS E+ E L
Sbjct: 442 EKLKKKHSDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLL 501
Query: 391 KKVTAKSGIVETLLSWANFKQSKDL-KKNDG--TKTEDVRGISKLEDANLAGGRNSEQCT 447
+ S I+E + WA KQ DL G +KT ++ ISKL+DAN AGG S++CT
Sbjct: 502 AQFVKNSKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECT 561
Query: 448 LILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGL 507
LI+TEGDSAK+LA+AGLSVVGR+ +GVFPLRGKLLNVR+ +S Q+L+N EI N+ ILGL
Sbjct: 562 LIITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGL 621
Query: 508 KQGVEYN---NVKSLRYGHLMIMTDQ 530
Y+ +++ LRYG +MIM DQ
Sbjct: 622 SHKNSYDTDESMEDLRYGRVMIMADQ 647
Score = 534 (193.0 bits), Expect = 4.2e-251, Sum P(4) = 4.2e-251
Identities = 114/248 (45%), Positives = 161/248 (64%)
Query: 30 MYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRT-ISYVPGLYKIFDEILV 88
M+ K+ + I L D ++E T ++ T IH +Y+PGL KI+DEILV
Sbjct: 125 MFNKEKKT--IELNNDNNEKNVESTTTTTTKTNKKPLTYIHPIKATYIPGLLKIYDEILV 182
Query: 89 NAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSN 148
NAADNK+RD KM +KV I+ + IS+ N G G+PV +HQ E YV E++ G+L++ SN
Sbjct: 183 NAADNKKRDSKMSFIKVEINPNENSISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSN 242
Query: 149 YDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCK 208
++D+ K GGRNG+GAKLTNIFS EF +ET D KKY Q ++NNMG +SEP I+
Sbjct: 243 FNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIITPIG 302
Query: 209 EGDN-WTKVSFKPDLAKFNMTHLEDD-VVALMKKRVVDLAGCLGKSVKVELNGHRVPVKS 266
EG++ +TK++FKPDL KF + L DD ++ LM++R+ D+AGC + V LNG R+ +
Sbjct: 303 EGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIAGC-NTELMVTLNGKRLNY-N 360
Query: 267 FAEYVDMY 274
F YV +Y
Sbjct: 361 FQSYVKLY 368
Score = 126 (49.4 bits), Expect = 4.3e-208, Sum P(4) = 4.3e-208
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 10 TTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWI-----YEEE 64
T N + + IE++YQKK+ EH+LLRPD+YIG+IEK +W+ + +E
Sbjct: 70 TKLNKNEKISEKTTTRKIEDIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKE 129
Query: 65 SKTM 68
KT+
Sbjct: 130 KKTI 133
Score = 100 (40.3 bits), Expect = 4.2e-251, Sum P(4) = 4.2e-251
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 1128 YDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKS 1187
Y +L S++I +T E++ L K E + + P+SLW DL L + L+KS
Sbjct: 1186 YQHLFSLSILDITKERIDNLTNQLTKRKSEHQSISSSDPKSLWTADLQQLK---EYLEKS 1242
Query: 1188 DARAEEERMKIKGNGNGDAGPKIV-AKRAPKNARKNDK 1224
D +++ +K + + D AK + K DK
Sbjct: 1243 DKEFQKKPLKTSSSSSFDVSSSSESAKLSSTRKSKTDK 1280
Score = 41 (19.5 bits), Expect = 2.0e-150, Sum P(4) = 2.0e-150
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 92 DNKQRDPKMDAVKVVIDQEHD 112
D D + V ++ DQ+HD
Sbjct: 630 DESMEDLRYGRVMIMADQDHD 650
Score = 40 (19.1 bits), Expect = 3.1e-51, Sum P(3) = 3.1e-51
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 287 ERWEICVTLSEGQFQQ--VSFVNGIATIKGGTHVDYVAN 323
E+W T+S Q +Q + + G+ T +Y +N
Sbjct: 702 EKWR--ETISSDQLKQYTIKYYKGLGTSTSAEAKEYFSN 738
Score = 38 (18.4 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 1083 ELRQKGFTPFPKNSKSIEAVVAGA 1106
E+ + F KNSK IE V A
Sbjct: 495 EIPESLLAQFVKNSKIIERVAGWA 518
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 1179 (420.1 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 267/605 (44%), Positives = 361/605 (59%)
Query: 31 YQKKSQLEHILLRPDTYIGSIE-KHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVN 89
Y+KKS EH+LLRPDTYIG + + Q +W+ + E++ MI + ++Y PGL KIFDEILVN
Sbjct: 47 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 106
Query: 90 AADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNY 149
AADNK RD M+ ++V +D+E ISV N+G G+PVEIH EG+YVP L+FG+L TSSNY
Sbjct: 107 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNY 166
Query: 150 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKE 209
DD+ KT GGRNGYGAKL NIFS EFI+ET D + ++++Q + +NM K +E + + +
Sbjct: 167 DDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILD 226
Query: 210 GD--NWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSF 267
++TKV F PDL +F + L DDV+ L+ +RV ++A L + V V LNG + V F
Sbjct: 227 ETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGF 286
Query: 268 AEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQ--------VSFVNGIATIKGGTHVD 319
+YV M+ S + RW + V F + VSFVN I T KGG+HVD
Sbjct: 287 EDYVKMFNDSSSLLFLHPTPRWHVGVAKRNNFFGESHVVLPKIVSFVNNINTEKGGSHVD 346
Query: 320 YVANQXXXXXXXXXXXXXXXXXXXX--XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQS 377
YV ++ L +F+N LI+NP+F+SQTKETLT +
Sbjct: 347 YVMDKIVNIIKPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAK 406
Query: 378 SFGSKCELSEEFLKKVTAKSGIVETLLSWA-NFKQSKDLKKNDGTKTEDVRGISKLEDAN 436
+FGS E + + +SG++E ++ N K+ K K VR I KLEDA
Sbjct: 407 NFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKR--VSVSSVRDIVKLEDAE 464
Query: 437 LAG-GRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
AG +E+CTLILTEGDSAKALA+AGL V+GR+ +GVFPL+GKLLNV + N
Sbjct: 465 WAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKN 524
Query: 496 SEIGNIKKILGLKQGVEYNNV--KSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFC 553
EI N+ +ILGLK + N++ +SLRYG L+I+ DQ
Sbjct: 525 EEISNLLRILGLKFE-DSNSITRESLRYGRLLILADQ----------------------- 560
Query: 554 FMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDY 613
D DGSHIKGL++NFIH FWPSL+ F+ F TP++KA K KV SF+SM +Y
Sbjct: 561 -----DEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLLKA-KKGDKVRSFFSMNEY 614
Query: 614 EAWKE 618
W +
Sbjct: 615 RKWAD 619
Score = 1059 (377.8 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 233/554 (42%), Positives = 321/554 (57%)
Query: 558 QDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWK 617
QD DGSHIKGL++NFIH FWPSL+ F+ F TP++KA K KV SF+SM +Y W
Sbjct: 560 QDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLLKA-KKGDKVRSFFSMNEYRKWA 618
Query: 618 ESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKI 677
+ G W IKYYKGLGTSTS E +EYF ++ H +F + D +AI +AF + K
Sbjct: 619 DVEEGG--KWKIKYYKGLGTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKS 676
Query: 678 EARKKWLLQFEPG-NHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ RK+W+ + E + D + I Y +FV+ +L+ F M DL+RSIPS++DGLKP QRKI
Sbjct: 677 DERKEWIRRSENEITNEDDGKTEISYQEFVDGQLMQFGMVDLKRSIPSLIDGLKPSQRKI 736
Query: 737 LFCSFKR-NFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNG 795
L+ + E KV+Q +G V+ +YHHGE+SL TI+ M Q F GS+N+ LLQP G
Sbjct: 737 LWTLLNNMDESTEIKVSQLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIG 796
Query: 796 QFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTV 855
QFGTR++GG DAASARYIFT L+P TR LFP E+G +EPTW PI+P +
Sbjct: 797 QFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQKNVEEGMVVEPTWLCPIVPLI 856
Query: 856 LVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME-PMHPWYRGFGGTIEK-TASK- 912
L+NG+EGIGTGWS+ I N NP DI+ +RR ++ E + P+Y F G +E T +K
Sbjct: 857 LINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIPPFYEEFRGKLEVVTPTKF 916
Query: 913 -EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDT 971
+G + + + ++ I ELPI WT Y+E L I++ + F + +
Sbjct: 917 ISSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLP--VLEFSERHTEK 974
Query: 972 TVDFEVFLSEESMMRTKQEG---LLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEE 1028
V F + L + R Q+ LL FKL T++ T N LFD G +K++ +I E
Sbjct: 975 RVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSL-TENRVLFDRNGELKEFGNISEIAAE 1033
Query: 1029 FFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKG 1088
FF +R + YEKR K+Q + FI V NG I + + R L +L++ G
Sbjct: 1034 FFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQEMG 1093
Query: 1089 FTPFP-----KNSK 1097
F P KNSK
Sbjct: 1094 FRVDPMATIAKNSK 1107
Score = 71 (30.1 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 1119 VVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDAL 1177
+ + +Y YLL M + LT ++++ L + + E++ A +S+W +LD L
Sbjct: 1102 IAKNSKKANYGYLLEMPVSRLTSDEMKRLEERKSRRRTELEAAESADWKSVWRSELDKL 1160
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 1179 (420.1 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 267/605 (44%), Positives = 361/605 (59%)
Query: 31 YQKKSQLEHILLRPDTYIGSIE-KHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVN 89
Y+KKS EH+LLRPDTYIG + + Q +W+ + E++ MI + ++Y PGL KIFDEILVN
Sbjct: 47 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 106
Query: 90 AADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNY 149
AADNK RD M+ ++V +D+E ISV N+G G+PVEIH EG+YVP L+FG+L TSSNY
Sbjct: 107 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNY 166
Query: 150 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKE 209
DD+ KT GGRNGYGAKL NIFS EFI+ET D + ++++Q + +NM K +E + + +
Sbjct: 167 DDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILD 226
Query: 210 GD--NWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSF 267
++TKV F PDL +F + L DDV+ L+ +RV ++A L + V V LNG + V F
Sbjct: 227 ETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGF 286
Query: 268 AEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQ--------VSFVNGIATIKGGTHVD 319
+YV M+ S + RW + V F + VSFVN I T KGG+HVD
Sbjct: 287 EDYVKMFNDSSSLLFLHPTPRWHVGVAKRNNFFGESHVVLPKIVSFVNNINTEKGGSHVD 346
Query: 320 YVANQXXXXXXXXXXXXXXXXXXXX--XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQS 377
YV ++ L +F+N LI+NP+F+SQTKETLT +
Sbjct: 347 YVMDKIVNIIKPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAK 406
Query: 378 SFGSKCELSEEFLKKVTAKSGIVETLLSWA-NFKQSKDLKKNDGTKTEDVRGISKLEDAN 436
+FGS E + + +SG++E ++ N K+ K K VR I KLEDA
Sbjct: 407 NFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKR--VSVSSVRDIVKLEDAE 464
Query: 437 LAG-GRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495
AG +E+CTLILTEGDSAKALA+AGL V+GR+ +GVFPL+GKLLNV + N
Sbjct: 465 WAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKN 524
Query: 496 SEIGNIKKILGLKQGVEYNNV--KSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFC 553
EI N+ +ILGLK + N++ +SLRYG L+I+ DQ
Sbjct: 525 EEISNLLRILGLKFE-DSNSITRESLRYGRLLILADQ----------------------- 560
Query: 554 FMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDY 613
D DGSHIKGL++NFIH FWPSL+ F+ F TP++KA K KV SF+SM +Y
Sbjct: 561 -----DEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLLKA-KKGDKVRSFFSMNEY 614
Query: 614 EAWKE 618
W +
Sbjct: 615 RKWAD 619
Score = 1059 (377.8 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 233/554 (42%), Positives = 321/554 (57%)
Query: 558 QDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWK 617
QD DGSHIKGL++NFIH FWPSL+ F+ F TP++KA K KV SF+SM +Y W
Sbjct: 560 QDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLLKA-KKGDKVRSFFSMNEYRKWA 618
Query: 618 ESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKI 677
+ G W IKYYKGLGTSTS E +EYF ++ H +F + D +AI +AF + K
Sbjct: 619 DVEEGG--KWKIKYYKGLGTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKS 676
Query: 678 EARKKWLLQFEPG-NHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+ RK+W+ + E + D + I Y +FV+ +L+ F M DL+RSIPS++DGLKP QRKI
Sbjct: 677 DERKEWIRRSENEITNEDDGKTEISYQEFVDGQLMQFGMVDLKRSIPSLIDGLKPSQRKI 736
Query: 737 LFCSFKR-NFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNG 795
L+ + E KV+Q +G V+ +YHHGE+SL TI+ M Q F GS+N+ LLQP G
Sbjct: 737 LWTLLNNMDESTEIKVSQLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIG 796
Query: 796 QFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTV 855
QFGTR++GG DAASARYIFT L+P TR LFP E+G +EPTW PI+P +
Sbjct: 797 QFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQKNVEEGMVVEPTWLCPIVPLI 856
Query: 856 LVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME-PMHPWYRGFGGTIEK-TASK- 912
L+NG+EGIGTGWS+ I N NP DI+ +RR ++ E + P+Y F G +E T +K
Sbjct: 857 LINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIPPFYEEFRGKLEVVTPTKF 916
Query: 913 -EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDT 971
+G + + + ++ I ELPI WT Y+E L I++ + F + +
Sbjct: 917 ISSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLP--VLEFSERHTEK 974
Query: 972 TVDFEVFLSEESMMRTKQEG---LLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEE 1028
V F + L + R Q+ LL FKL T++ T N LFD G +K++ +I E
Sbjct: 975 RVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSL-TENRVLFDRNGELKEFGNISEIAAE 1033
Query: 1029 FFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKG 1088
FF +R + YEKR K+Q + FI V NG I + + R L +L++ G
Sbjct: 1034 FFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQEMG 1093
Query: 1089 FTPFP-----KNSK 1097
F P KNSK
Sbjct: 1094 FRVDPMATIAKNSK 1107
Score = 71 (30.1 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 1119 VVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDAL 1177
+ + +Y YLL M + LT ++++ L + + E++ A +S+W +LD L
Sbjct: 1102 IAKNSKKANYGYLLEMPVSRLTSDEMKRLEERKSRRRTELEAAESADWKSVWRSELDKL 1160
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 2126 (753.4 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 445/920 (48%), Positives = 603/920 (65%)
Query: 31 YQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNA 90
YQK + EHI +RPD+YIGS+E+ TQ +W+Y E M R +SYVPGLYKIFDEI+VNA
Sbjct: 120 YQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNA 179
Query: 91 ADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYD 150
ADNKQ D MD ++V +E + ISV N+G G+PVE+H+E G+Y+P+LIFG+LLTSSNYD
Sbjct: 180 ADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSSNYD 239
Query: 151 DNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEG 210
D +K TGGRNG+GAKL N+FSTEF +ET D K+ K+Y Q +T+NM +P I+ K G
Sbjct: 240 DAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTDNMQTVGKPKITAAK-G 298
Query: 211 DNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEY 270
++T+V+FK D +F M ++DD AL+K+RV DLAG G +VK LNG R+PV++F +Y
Sbjct: 299 SDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGTTGVTVK--LNGTRLPVRNFKKY 356
Query: 271 VDMYPKSVTRFHERVNER------------WEICVTLSEGQFQQVSFVNGIATIKGGTHV 318
++MY K++ R + + WEI +S+G F+QVSFVN IAT GGTHV
Sbjct: 357 MEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAVSDGSFKQVSFVNSIATTSGGTHV 416
Query: 319 DYVANQXXXXXXXXXXXXXXXXXXXX--XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQ 376
+Y+A+Q ++FVNA I NPAF SQTKE LT +Q
Sbjct: 417 NYIADQIAGKLSESLKKNKKGTGSILKPAQIRNYCFLFVNAKIVNPAFSSQTKEQLTTKQ 476
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDAN 436
+ FGSK L E FLKKV A SG++++L +A+ K LKK+DG + + KL DAN
Sbjct: 477 TQFGSKPILDESFLKKV-ANSGVLDSLKRFADHKADLMLKKSDGGRRSRMNN-PKLTDAN 534
Query: 437 LAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNS 496
AG ++ +CTLILTEG+SAK LAMAG +VVG D FGV+PLRGK+LNVR+AS +Q+ N
Sbjct: 535 RAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFDQISKNE 594
Query: 497 EIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFML 556
EI +IK +GL+ EY + K LRYGHLMIMTDQ S + ++ F +
Sbjct: 595 EIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDG--SHIKGLLINF--------LE 644
Query: 557 AQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAW 616
AQ I LI FI P ++K+ + I T ++ SF+++ +Y AW
Sbjct: 645 AQFPSLLKIPEFLIEFIT---P-IVKV------WKGDIKDPTKQH----SFFTIQEYNAW 690
Query: 617 KESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKK 676
KE G+ W KYYKGLGTS+++E +EYF+++ H K+F D++ E IELAFSKKK
Sbjct: 691 KEK-HGHERGWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEHELIELAFSKKK 749
Query: 677 IEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+E RK+WL Q+ P +D I Y+DF+N ELI FSMAD RSIPSMVDG+KPGQRK+
Sbjct: 750 VEERKEWLRQYNPDTFMDHSVAKISYTDFINNELIQFSMADNLRSIPSMVDGMKPGQRKV 809
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
++ KRN K+ KV +G V +AYHHG+ S+ TI+G+AQDFVGSNN+N L+P+G
Sbjct: 810 MYTVMKRNIKKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGN 869
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FG+R +GG DA+SARYI TRLSP R +F YL +DG++IEP Y+P++P +L
Sbjct: 870 FGSRLKGGADASSARYIHTRLSPFARKIFHPHDDPILKYLEDDGKEIEPWVYVPVVPMIL 929
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTAS---KE 913
+NG++GIGTGWS+ IPNYNP DIV N++R++ GE ++PM PW++GF G + + K
Sbjct: 930 INGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLGPDKYKF 989
Query: 914 AGVTYTVTGIIEEVNETTLR 933
+G+ V+ EV E +R
Sbjct: 990 SGLIKQVSDKELEVTELPIR 1009
Score = 1443 (513.0 bits), Expect = 1.8e-154, Sum P(3) = 1.8e-154
Identities = 307/721 (42%), Positives = 445/721 (61%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKN----GKVLSFYSM 610
M QDHDGSHIKGLLINF+ + +PSLLKIP FL+EFITPIVK + K SF+++
Sbjct: 625 MTDQDHDGSHIKGLLINFLEAQFPSLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSFFTI 684
Query: 611 PDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIEL 670
+Y AWKE G+ W KYYKGLGTS+++E +EYF+++ H K+F D++ E IEL
Sbjct: 685 QEYNAWKEK-HGHERGWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEHELIEL 743
Query: 671 AFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLK 730
AFSKKK+E RK+WL Q+ P +D I Y+DF+N ELI FSMAD RSIPSMVDG+K
Sbjct: 744 AFSKKKVEERKEWLRQYNPDTFMDHSVAKISYTDFINNELIQFSMADNLRSIPSMVDGMK 803
Query: 731 PGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINL 790
PGQRK+++ KRN K+ KV +G V +AYHHG+ S+ TI+G+AQDFVGSNN+N
Sbjct: 804 PGQRKVMYTVMKRNIKKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNT 863
Query: 791 LQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMP 850
L+P+G FG+R +GG DA+SARYI TRLSP R +F YL +DG++IEP Y+P
Sbjct: 864 LEPSGNFGSRLKGGADASSARYIHTRLSPFARKIFHPHDDPILKYLEDDGKEIEPWVYVP 923
Query: 851 IIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTA 910
++P +L+NG++GIGTGWS+ IPNYNP DIV N++R++ GE ++PM PW++GF G + +
Sbjct: 924 VVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLG 983
Query: 911 SKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESII--DQNDSFIRGFRQYS 968
+ Y +G+I++V++ L + ELPIR WTQD+ LE +I D+ S I+ ++ Y+
Sbjct: 984 PDK----YKFSGLIKQVSDKELEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYKDYN 1039
Query: 969 DDTTVDFEVFLSEESMMRT-KQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1027
++ V + L E+++ QE L +KFKL+ TI+T+N+ F+++G + KY E ILE
Sbjct: 1040 TNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILE 1099
Query: 1028 EFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQK 1087
EF+ +RL+FY KRK+ Q RF+ +++G++VV+ +K++ L+ EL
Sbjct: 1100 EFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVQMIIDGDLVVSKKKKSVLVKELDSL 1159
Query: 1088 GFTPFPKNSKSIEAVVAGATDXXXXXXXX--XXVVNGVQSID--YDYLLSMAIGTLTLEK 1143
GF F +K+ +A AG T+ + Q + +DYLL MAI +LT E+
Sbjct: 1160 GFKRF---NKTADAAKAGETEKVIEASEDEDTEAQDDTQDLAHAFDYLLGMAIWSLTQER 1216
Query: 1144 VQGLLADRDKLNEEVDDLRKATPESLWVKDLDAL----DMQLDELDKSDARAEEERMKIK 1199
V+ L + E+D+L K + E +W++DLD QL E D+ R ++++ +
Sbjct: 1217 VEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRR-RRGQQKKGRRV 1275
Query: 1200 GNGNGDAGPKIVAKRAPKNARKND--------KKSNNARATE-AMGEMDNVTKVVKPKGR 1250
A + K+ +D KK A TE A G M + K KP+
Sbjct: 1276 STKLATAARAVGGKKRKAAGDDSDDDFVVSKSKKKAAANKTEPAGGIMSFLKKTPKPEPA 1335
Query: 1251 A 1251
A
Sbjct: 1336 A 1336
Score = 57 (25.1 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 1185 DKSDARAEEERMKI-KGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTK 1243
D SD ++E M+I K A P+ K APK +D S+N + +G+ V+K
Sbjct: 1431 DDSDGLDDDEFMEIAKAEAAKTAPPRAGRKAAPKYTL-DDSDSDNG--DDLLGD---VSK 1484
Query: 1244 VVKPKGRA 1251
+VK G A
Sbjct: 1485 MVKGIGGA 1492
Score = 43 (20.2 bits), Expect = 1.8e-154, Sum P(3) = 1.8e-154
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 14 NANVVGPTAPNKTIEEMYQKKSQ 36
NA +V P ++T E++ K++Q
Sbjct: 456 NAKIVNPAFSSQTKEQLTTKQTQ 478
Score = 41 (19.5 bits), Expect = 3.3e-224, Sum P(3) = 3.3e-224
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 1163 KATPESLWVKDLDA-LDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARK 1221
KA+P+ +KD D LDM+ E++ + K G A PK AK ++ +
Sbjct: 1362 KASPQ---LKDEDGDLDMEASEVEVAPK---------KSRGPPKAAPKAAAKLKDEDKDE 1409
Query: 1222 NDKK 1225
++ K
Sbjct: 1410 DEPK 1413
Score = 37 (18.1 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 25 KTIEEMYQKKSQLEHILLRPDTYIGSIEK 53
+T +EM+ S+++ + R +Y+ + K
Sbjct: 142 RTTQEMWVYNSEIDGMEFREVSYVPGLYK 170
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 2126 (753.4 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 445/920 (48%), Positives = 603/920 (65%)
Query: 31 YQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNA 90
YQK + EHI +RPD+YIGS+E+ TQ +W+Y E M R +SYVPGLYKIFDEI+VNA
Sbjct: 120 YQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNA 179
Query: 91 ADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYD 150
ADNKQ D MD ++V +E + ISV N+G G+PVE+H+E G+Y+P+LIFG+LLTSSNYD
Sbjct: 180 ADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSSNYD 239
Query: 151 DNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEG 210
D +K TGGRNG+GAKL N+FSTEF +ET D K+ K+Y Q +T+NM +P I+ K G
Sbjct: 240 DAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTDNMQTVGKPKITAAK-G 298
Query: 211 DNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEY 270
++T+V+FK D +F M ++DD AL+K+RV DLAG G +VK LNG R+PV++F +Y
Sbjct: 299 SDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGTTGVTVK--LNGTRLPVRNFKKY 356
Query: 271 VDMYPKSVTRFHERVNER------------WEICVTLSEGQFQQVSFVNGIATIKGGTHV 318
++MY K++ R + + WEI +S+G F+QVSFVN IAT GGTHV
Sbjct: 357 MEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAVSDGSFKQVSFVNSIATTSGGTHV 416
Query: 319 DYVANQXXXXXXXXXXXXXXXXXXXX--XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQ 376
+Y+A+Q ++FVNA I NPAF SQTKE LT +Q
Sbjct: 417 NYIADQIAGKLSESLKKNKKGTGSILKPAQIRNYCFLFVNAKIVNPAFSSQTKEQLTTKQ 476
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDAN 436
+ FGSK L E FLKKV A SG++++L +A+ K LKK+DG + + KL DAN
Sbjct: 477 TQFGSKPILDESFLKKV-ANSGVLDSLKRFADHKADLMLKKSDGGRRSRMNN-PKLTDAN 534
Query: 437 LAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNS 496
AG ++ +CTLILTEG+SAK LAMAG +VVG D FGV+PLRGK+LNVR+AS +Q+ N
Sbjct: 535 RAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFDQISKNE 594
Query: 497 EIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFML 556
EI +IK +GL+ EY + K LRYGHLMIMTDQ S + ++ F +
Sbjct: 595 EIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDG--SHIKGLLINF--------LE 644
Query: 557 AQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAW 616
AQ I LI FI P ++K+ + I T ++ SF+++ +Y AW
Sbjct: 645 AQFPSLLKIPEFLIEFIT---P-IVKV------WKGDIKDPTKQH----SFFTIQEYNAW 690
Query: 617 KESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKK 676
KE G+ W KYYKGLGTS+++E +EYF+++ H K+F D++ E IELAFSKKK
Sbjct: 691 KEK-HGHERGWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEHELIELAFSKKK 749
Query: 677 IEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736
+E RK+WL Q+ P +D I Y+DF+N ELI FSMAD RSIPSMVDG+KPGQRK+
Sbjct: 750 VEERKEWLRQYNPDTFMDHSVAKISYTDFINNELIQFSMADNLRSIPSMVDGMKPGQRKV 809
Query: 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796
++ KRN K+ KV +G V +AYHHG+ S+ TI+G+AQDFVGSNN+N L+P+G
Sbjct: 810 MYTVMKRNIKKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGN 869
Query: 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVL 856
FG+R +GG DA+SARYI TRLSP R +F YL +DG++IEP Y+P++P +L
Sbjct: 870 FGSRLKGGADASSARYIHTRLSPFARKIFHPHDDPILKYLEDDGKEIEPWVYVPVVPMIL 929
Query: 857 VNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTAS---KE 913
+NG++GIGTGWS+ IPNYNP DIV N++R++ GE ++PM PW++GF G + + K
Sbjct: 930 INGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLGPDKYKF 989
Query: 914 AGVTYTVTGIIEEVNETTLR 933
+G+ V+ EV E +R
Sbjct: 990 SGLIKQVSDKELEVTELPIR 1009
Score = 1443 (513.0 bits), Expect = 1.8e-154, Sum P(3) = 1.8e-154
Identities = 307/721 (42%), Positives = 445/721 (61%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKN----GKVLSFYSM 610
M QDHDGSHIKGLLINF+ + +PSLLKIP FL+EFITPIVK + K SF+++
Sbjct: 625 MTDQDHDGSHIKGLLINFLEAQFPSLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSFFTI 684
Query: 611 PDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIEL 670
+Y AWKE G+ W KYYKGLGTS+++E +EYF+++ H K+F D++ E IEL
Sbjct: 685 QEYNAWKEK-HGHERGWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEHELIEL 743
Query: 671 AFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLK 730
AFSKKK+E RK+WL Q+ P +D I Y+DF+N ELI FSMAD RSIPSMVDG+K
Sbjct: 744 AFSKKKVEERKEWLRQYNPDTFMDHSVAKISYTDFINNELIQFSMADNLRSIPSMVDGMK 803
Query: 731 PGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINL 790
PGQRK+++ KRN K+ KV +G V +AYHHG+ S+ TI+G+AQDFVGSNN+N
Sbjct: 804 PGQRKVMYTVMKRNIKKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNT 863
Query: 791 LQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMP 850
L+P+G FG+R +GG DA+SARYI TRLSP R +F YL +DG++IEP Y+P
Sbjct: 864 LEPSGNFGSRLKGGADASSARYIHTRLSPFARKIFHPHDDPILKYLEDDGKEIEPWVYVP 923
Query: 851 IIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTA 910
++P +L+NG++GIGTGWS+ IPNYNP DIV N++R++ GE ++PM PW++GF G + +
Sbjct: 924 VVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLG 983
Query: 911 SKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESII--DQNDSFIRGFRQYS 968
+ Y +G+I++V++ L + ELPIR WTQD+ LE +I D+ S I+ ++ Y+
Sbjct: 984 PDK----YKFSGLIKQVSDKELEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYKDYN 1039
Query: 969 DDTTVDFEVFLSEESMMRT-KQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1027
++ V + L E+++ QE L +KFKL+ TI+T+N+ F+++G + KY E ILE
Sbjct: 1040 TNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILE 1099
Query: 1028 EFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQK 1087
EF+ +RL+FY KRK+ Q RF+ +++G++VV+ +K++ L+ EL
Sbjct: 1100 EFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVQMIIDGDLVVSKKKKSVLVKELDSL 1159
Query: 1088 GFTPFPKNSKSIEAVVAGATDXXXXXXXX--XXVVNGVQSID--YDYLLSMAIGTLTLEK 1143
GF F +K+ +A AG T+ + Q + +DYLL MAI +LT E+
Sbjct: 1160 GFKRF---NKTADAAKAGETEKVIEASEDEDTEAQDDTQDLAHAFDYLLGMAIWSLTQER 1216
Query: 1144 VQGLLADRDKLNEEVDDLRKATPESLWVKDLDAL----DMQLDELDKSDARAEEERMKIK 1199
V+ L + E+D+L K + E +W++DLD QL E D+ R ++++ +
Sbjct: 1217 VEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRR-RRGQQKKGRRV 1275
Query: 1200 GNGNGDAGPKIVAKRAPKNARKND--------KKSNNARATE-AMGEMDNVTKVVKPKGR 1250
A + K+ +D KK A TE A G M + K KP+
Sbjct: 1276 STKLATAARAVGGKKRKAAGDDSDDDFVVSKSKKKAAANKTEPAGGIMSFLKKTPKPEPA 1335
Query: 1251 A 1251
A
Sbjct: 1336 A 1336
Score = 57 (25.1 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 1185 DKSDARAEEERMKI-KGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTK 1243
D SD ++E M+I K A P+ K APK +D S+N + +G+ V+K
Sbjct: 1431 DDSDGLDDDEFMEIAKAEAAKTAPPRAGRKAAPKYTL-DDSDSDNG--DDLLGD---VSK 1484
Query: 1244 VVKPKGRA 1251
+VK G A
Sbjct: 1485 MVKGIGGA 1492
Score = 43 (20.2 bits), Expect = 1.8e-154, Sum P(3) = 1.8e-154
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 14 NANVVGPTAPNKTIEEMYQKKSQ 36
NA +V P ++T E++ K++Q
Sbjct: 456 NAKIVNPAFSSQTKEQLTTKQTQ 478
Score = 41 (19.5 bits), Expect = 3.3e-224, Sum P(3) = 3.3e-224
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 1163 KATPESLWVKDLDA-LDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARK 1221
KA+P+ +KD D LDM+ E++ + K G A PK AK ++ +
Sbjct: 1362 KASPQ---LKDEDGDLDMEASEVEVAPK---------KSRGPPKAAPKAAAKLKDEDKDE 1409
Query: 1222 NDKK 1225
++ K
Sbjct: 1410 DEPK 1413
Score = 37 (18.1 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 25 KTIEEMYQKKSQLEHILLRPDTYIGSIEK 53
+T +EM+ S+++ + R +Y+ + K
Sbjct: 142 RTTQEMWVYNSEIDGMEFREVSYVPGLYK 170
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 1656 (588.0 bits), Expect = 4.1e-173, Sum P(2) = 4.1e-173
Identities = 376/874 (43%), Positives = 520/874 (59%)
Query: 395 AKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGD 454
+KSGIVE++L+WA FK D+ K G K+ ++GI KLEDAN AGG+NS +CTLILTEGD
Sbjct: 384 SKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSIKCTLILTEGD 443
Query: 455 SAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYN 514
SAK+LA++GL V+GRD +GVFPLRGKLLNVREA+ Q+ N+EI N+ KI+GL+ +Y
Sbjct: 444 SAKSLAVSGLGVIGRDLYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYL 503
Query: 515 NVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIH 574
L+ + +V++ M QD DGSHIKGLLINFIH
Sbjct: 504 TEDDLK----TLRYGKVMI---------------------MTDQDQDGSHIKGLLINFIH 538
Query: 575 SFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKG 634
+ WP LL++P FL EFITPIVKAT KN + LSFYS+P++E WK N +++IKYYKG
Sbjct: 539 TNWPELLRLP-FLEEFITPIVKATKKNEE-LSFYSLPEFEEWKNDTA-NHHTYNIKYYKG 595
Query: 635 LGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLL----QFEPG 690
LGTSTSKE KEYFQ++ H+ F ++ D E+I +AFSKK IE+RK WL + +
Sbjct: 596 LGTSTSKEAKEYFQDMDRHRILFKYDGSVDDESIVMAFSKKHIESRKVWLTNHMDEVKRR 655
Query: 691 NHLDQKEKY--------IKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFK 742
L E+Y I Y+DF+N EL+LFS AD +RSIPS+VDGLKPGQRK++F FK
Sbjct: 656 KELGLPERYLYTKGTKSITYADFINLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFK 715
Query: 743 RNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQ 802
RN +E KVAQ SG V+E SAYHHGE SL TI+ +AQ+FVG+NNINLL+P GQFGTR
Sbjct: 716 RNDKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLS 775
Query: 803 GGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEG 862
GGKD ASARYIFT +SP+TR ++ Y +DGQ+IEP WY+PIIP VLVNG+EG
Sbjct: 776 GGKDCASARYIFTIMSPLTRLIYHPLDDPLLDYQVDDGQKIEPLWYLPIIPMVLVNGAEG 835
Query: 863 IGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTG 922
IGTGWS+ I NYNPR+I+ N+R+++NG+ MHPWY+ F G +E + Y TG
Sbjct: 836 IGTGWSTKISNYNPREIMKNLRKMINGQEPSVMHPWYKNFLGRMEYVSDGR----YIQTG 891
Query: 923 IIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS---FIRGFRQYSDDTTVDFEVF 978
I+ ++ L I ELP+ WTQ+Y+E LE + + + I +R+Y DTTV F +
Sbjct: 892 NIQILSGNRLEISELPVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHTDTTVRFVIS 951
Query: 979 LS--EESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEF 1036
+ E + ++ G + FKLTTT+ST+ MH FD ++++ T IL+E++ +R E+
Sbjct: 952 FAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYKLRREY 1011
Query: 1037 YEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP--- 1093
Y +R+ RFIL ++VV N++R + EL ++G+ P P
Sbjct: 1012 YARRRDFLVGQLTAQADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRPDPVKE 1071
Query: 1094 --KNSKSIEAVVAGATDXXXXXXX--XXXVVNGVQSIDYDYLLSMAIGTLTLEKVQGL-- 1147
+ K +A A D + +D + + + G+
Sbjct: 1072 WQRRIKMEDAEQADEEDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTDVKKFDYLLGMSM 1131
Query: 1148 -LADRDKLNEEVD--DLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNG 1204
+ +K NE + D + + ESL K + L LD+LD +++ E K + G
Sbjct: 1132 WMLTEEKKNELLKQRDTKLSELESLRKKTPEML--WLDDLDALESKLNEVEEKERAEEQG 1189
Query: 1205 DAGPKIVAKRAPKNARKNDKKSNNARATEAMGEM 1238
A + K+A +K + G++
Sbjct: 1190 INLKTAKALKGQKSASAKGRKVKSMGGGAGAGDV 1223
Score = 1425 (506.7 bits), Expect = 7.6e-161, Sum P(2) = 7.6e-161
Identities = 282/517 (54%), Positives = 370/517 (71%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
+IE+MYQKKSQLEHILLRPD+YIGS+E + +W+Y+ M+ + IS+VPGLYKIFDE
Sbjct: 9 SIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFDE 68
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRD M+ +K+ ID E +++SV N+G G+PV +H+E+ +YVP +IFGHLLT
Sbjct: 69 ILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKEQKMYVPTMIFGHLLT 128
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNY+D+ KK TGGRNGYGAKL NIFST F +ETA + K +KQ + NNMGK S+ I
Sbjct: 129 SSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGNNMGKASDVQI- 187
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K G ++T+++F PDLAKF M L++D+VALM +R D+A K V V LNG+++ V+
Sbjct: 188 KDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAAS-SKGVSVFLNGNKLGVR 246
Query: 266 SFAEYVDMYPKS--------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTH 317
+F +Y+D++ K+ + HE NERWE+ S+ FQQVSFVN IAT KGG H
Sbjct: 247 NFKDYIDLHIKNTDDDSGPPIKIVHEVANERWEVACCPSDRGFQQVSFVNSIATYKGGRH 306
Query: 318 VDYVA-NQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTKETLTLRQ 376
VD+V N LWVFVN LI+NP FDSQTKE +TL+Q
Sbjct: 307 VDHVVDNLIKQLLEVLKKKNKGGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQ 366
Query: 377 SSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDAN 436
FGSKC LSE+F+ ++ KSGIVE++L+WA FK D+ K G K+ ++GI KLEDAN
Sbjct: 367 KGFGSKCTLSEKFINNMS-KSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDAN 425
Query: 437 LAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNS 496
AGG+NS +CTLILTEGDSAK+LA++GL V+GRD +GVFPLRGKLLNVREA+ Q+ N+
Sbjct: 426 EAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKLLNVREANFKQLSENA 485
Query: 497 EIGNIKKILGLKQGVEY---NNVKSLRYGHLMIMTDQ 530
EI N+ KI+GL+ +Y +++K+LRYG +MIMTDQ
Sbjct: 486 EINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQ 522
Score = 163 (62.4 bits), Expect = 7.6e-161, Sum P(2) = 7.6e-161
Identities = 60/207 (28%), Positives = 88/207 (42%)
Query: 1128 YDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKS 1187
+DYLL M++ LT EK LL RD E++ LRK TPE LW+ DLDAL+ +L+E+++
Sbjct: 1123 FDYLLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTPEMLWLDDLDALESKLNEVEEK 1182
Query: 1188 DARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKP 1247
+ RAEE+ + +K G K A RK A A + + D K
Sbjct: 1183 E-RAEEQGINLK-TAKALKGQK----SASAKGRKVKSMGGGAGAGDVFPDPDGEPVEFKI 1236
Query: 1248 KGRAGLXXXXXXXXXXXXXXXXXXXXQRLAKLNEQLASTKLEPSPDQSG--VMETE---- 1301
+ K+ ++ +++ PD SG V E +
Sbjct: 1237 TEEIIKKMAAAAKVAQAAKEPKKPKEPKEPKVKKEPKGKQIKAEPDASGDEVDEFDAMVE 1296
Query: 1302 ---KVQVPAKK----KEPSKRTAAQKK 1321
K AKK KEP ++ QKK
Sbjct: 1297 GGSKTSPKAKKAVVKKEPGEKKPRQKK 1323
Score = 48 (22.0 bits), Expect = 4.1e-173, Sum P(2) = 4.1e-173
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 1178 DMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSN 1227
D DE+D+ DA E G+ K V K+ P + KK N
Sbjct: 1282 DASGDEVDEFDAMVEG------GSKTSPKAKKAVVKKEPGEKKPRQKKEN 1325
Score = 45 (20.9 bits), Expect = 2.2e-148, Sum P(2) = 2.2e-148
Identities = 26/109 (23%), Positives = 46/109 (42%)
Query: 1137 GTLTLEKVQGLLADRDKLNEEVDDL--RKATPESLWV-KDLDALDMQLDEL-DKSDARAE 1192
G L K+ A K +++V+++ R P K +D + DE D + ++
Sbjct: 1327 GGLKQSKIDFSKAKAKKSDDDVEEVTPRAERPGRRQASKKIDYSSLFSDEEEDGGNVGSD 1386
Query: 1193 EERMKIKGNGNGDAGPKIVAKRAPKNARKND-KKSNNARATEAMGEMDN 1240
++ GN + D PK AKR ++ KK + A+ E D+
Sbjct: 1387 DD-----GNASDDDSPKRPAKRGREDESSGGAKKKAPPKKRRAVIESDD 1430
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 1216 (433.1 bits), Expect = 9.0e-156, Sum P(2) = 9.0e-156
Identities = 277/655 (42%), Positives = 389/655 (59%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGS KGLL+NF H FWP+L K F+ +FITPI KAT +V SFYS+P+Y
Sbjct: 141 MANHDSDGSQFKGLLLNFFHRFWPALFK-RDFVEDFITPIAKATEGKEEV-SFYSLPEYS 198
Query: 615 AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK 674
W+ + N S++IKYY GLGT TSKE K+ F ++ H+ F + D +A+ +AFSK
Sbjct: 199 EWRMNTD-NWKSYTIKYYNGLGTLTSKEAKKCFSDMVRHRIRFKYNGADDDKAVNMAFSK 257
Query: 675 KKIEARKKWLLQF-EPGNHLDQ----------KE-KYIKYSDFVNKELILFSMADLQRSI 722
KKIEAR +L++ + N Q KE +++ DF N E++ +L SI
Sbjct: 258 KKIEARTDYLMKLMQDKNQRKQQGLAEECLYNKETRFVTLKDFFNYEIVC--SWNLH-SI 314
Query: 723 PSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDF 782
P +VDGLKPGQRK+LF FKR +E KVAQ +G V+E SAYHHGEQSL TI+ +AQD+
Sbjct: 315 PCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAEISAYHHGEQSLMGTIVNLAQDY 374
Query: 783 VGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQ 842
VGS+NINLL P GQFGTR QGGKD+ASAR IF +LS +TR LFP +L E+ Q+
Sbjct: 375 VGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFLYEENQR 434
Query: 843 IEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGF 902
IEP WY PIIP VLVNG++G GTGWS+ IPNYNPR++V N++RL+ GE + + PWY+ F
Sbjct: 435 IEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKNF 494
Query: 903 GGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS-- 959
G I + + G + +++ T+ I ELPI++WTQDY+E LE +++ +D
Sbjct: 495 RGKIIQIDPSR----FACYGEVSVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDKKS 550
Query: 960 -FIRGFRQYSDDTTVDFEVFLSEESMMRTKQ-EGLLKKFKLTTTISTSNMHLFDSKGVIK 1017
I +++Y DTTV F V LS + ++ + L + FKL I+T+ M LFD+ G ++
Sbjct: 551 PVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVLFDAAGWLR 610
Query: 1018 KYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKR 1077
Y +PE I +EF+ R E Y +RK+ RFIL +N +IV+ N+K+
Sbjct: 611 TYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTNQARFILATINNKIVLENKKK 670
Query: 1078 T---DLLLELRQKGFTPFPK---NSKSIEAVVAGATDXXXXXXXXXXVVNG--VQSI--- 1126
T D+L++++ P K + K E +G + V G + S
Sbjct: 671 TAIVDVLIKMKFDA-DPVKKWKEDQKLKELRESGEIELDEDDLAAVAVEEGEDISSAAKA 729
Query: 1127 ------DYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLD 1175
DYDYL+ +A+ L+ E+ L+ + ++ EV L K T + LW+ DLD
Sbjct: 730 VETKLSDYDYLVGLALIKLSEEEKNKLIKESEEKMAEVRVLEKKTWQDLWITDLD 784
Score = 324 (119.1 bits), Expect = 9.0e-156, Sum P(2) = 9.0e-156
Identities = 70/124 (56%), Positives = 93/124 (75%)
Query: 410 KQSKDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVG 468
KQ DL +K KT ++GI KLEDAN AG +NS+QCTLILTEGDSAK LA++GLSVVG
Sbjct: 20 KQMDDLNQKCPKRKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVG 79
Query: 469 RDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEY---NNVKSLRYGHLM 525
RD++GVFP R KLLNV + + NQ+ +++E+ I KILGL+ +Y ++ K+LRYG L+
Sbjct: 80 RDKYGVFPFRRKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLL 139
Query: 526 IMTD 529
IM +
Sbjct: 140 IMAN 143
Score = 41 (19.5 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 1153 KLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVA 1212
K ++++ +LR++ L DL A+ ++ E S A+A E ++ G A K+
Sbjct: 691 KEDQKLKELRESGEIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKLSE 750
Query: 1213 KRAPKNARKNDKKSNNARATE 1233
+ K +++++K R E
Sbjct: 751 EEKNKLIKESEEKMAEVRVLE 771
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 1216 (433.1 bits), Expect = 9.0e-156, Sum P(2) = 9.0e-156
Identities = 277/655 (42%), Positives = 389/655 (59%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGS KGLL+NF H FWP+L K F+ +FITPI KAT +V SFYS+P+Y
Sbjct: 141 MANHDSDGSQFKGLLLNFFHRFWPALFK-RDFVEDFITPIAKATEGKEEV-SFYSLPEYS 198
Query: 615 AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK 674
W+ + N S++IKYY GLGT TSKE K+ F ++ H+ F + D +A+ +AFSK
Sbjct: 199 EWRMNTD-NWKSYTIKYYNGLGTLTSKEAKKCFSDMVRHRIRFKYNGADDDKAVNMAFSK 257
Query: 675 KKIEARKKWLLQF-EPGNHLDQ----------KE-KYIKYSDFVNKELILFSMADLQRSI 722
KKIEAR +L++ + N Q KE +++ DF N E++ +L SI
Sbjct: 258 KKIEARTDYLMKLMQDKNQRKQQGLAEECLYNKETRFVTLKDFFNYEIVC--SWNLH-SI 314
Query: 723 PSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDF 782
P +VDGLKPGQRK+LF FKR +E KVAQ +G V+E SAYHHGEQSL TI+ +AQD+
Sbjct: 315 PCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAEISAYHHGEQSLMGTIVNLAQDY 374
Query: 783 VGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQ 842
VGS+NINLL P GQFGTR QGGKD+ASAR IF +LS +TR LFP +L E+ Q+
Sbjct: 375 VGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFLYEENQR 434
Query: 843 IEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGF 902
IEP WY PIIP VLVNG++G GTGWS+ IPNYNPR++V N++RL+ GE + + PWY+ F
Sbjct: 435 IEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKNF 494
Query: 903 GGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYRE-FLESIIDQNDS-- 959
G I + + G + +++ T+ I ELPI++WTQDY+E LE +++ +D
Sbjct: 495 RGKIIQIDPSR----FACYGEVSVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDKKS 550
Query: 960 -FIRGFRQYSDDTTVDFEVFLSEESMMRTKQ-EGLLKKFKLTTTISTSNMHLFDSKGVIK 1017
I +++Y DTTV F V LS + ++ + L + FKL I+T+ M LFD+ G ++
Sbjct: 551 PVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVLFDAAGWLR 610
Query: 1018 KYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKR 1077
Y +PE I +EF+ R E Y +RK+ RFIL +N +IV+ N+K+
Sbjct: 611 TYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTNQARFILATINNKIVLENKKK 670
Query: 1078 T---DLLLELRQKGFTPFPK---NSKSIEAVVAGATDXXXXXXXXXXVVNG--VQSI--- 1126
T D+L++++ P K + K E +G + V G + S
Sbjct: 671 TAIVDVLIKMKFDA-DPVKKWKEDQKLKELRESGEIELDEDDLAAVAVEEGEDISSAAKA 729
Query: 1127 ------DYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLD 1175
DYDYL+ +A+ L+ E+ L+ + ++ EV L K T + LW+ DLD
Sbjct: 730 VETKLSDYDYLVGLALIKLSEEEKNKLIKESEEKMAEVRVLEKKTWQDLWITDLD 784
Score = 324 (119.1 bits), Expect = 9.0e-156, Sum P(2) = 9.0e-156
Identities = 70/124 (56%), Positives = 93/124 (75%)
Query: 410 KQSKDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVG 468
KQ DL +K KT ++GI KLEDAN AG +NS+QCTLILTEGDSAK LA++GLSVVG
Sbjct: 20 KQMDDLNQKCPKRKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVG 79
Query: 469 RDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEY---NNVKSLRYGHLM 525
RD++GVFP R KLLNV + + NQ+ +++E+ I KILGL+ +Y ++ K+LRYG L+
Sbjct: 80 RDKYGVFPFRRKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLL 139
Query: 526 IMTD 529
IM +
Sbjct: 140 IMAN 143
Score = 41 (19.5 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 1153 KLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVA 1212
K ++++ +LR++ L DL A+ ++ E S A+A E ++ G A K+
Sbjct: 691 KEDQKLKELRESGEIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKLSE 750
Query: 1213 KRAPKNARKNDKKSNNARATE 1233
+ K +++++K R E
Sbjct: 751 EEKNKLIKESEEKMAEVRVLE 771
>UNIPROTKB|F1NWD7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR003594 InterPro:IPR013506 Pfam:PF00204 Pfam:PF02518
PRINTS:PR00418 SMART:SM00387 SMART:SM00433 GO:GO:0005524
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 GeneTree:ENSGT00390000016222 EMBL:AADN02001127
IPI:IPI00586348 Ensembl:ENSGALT00000018433 ArrayExpress:F1NWD7
Uniprot:F1NWD7
Length = 261
Score = 639 (230.0 bits), Expect = 2.0e-61, P = 2.0e-61
Identities = 131/236 (55%), Positives = 166/236 (70%)
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
+ +NAADNKQRD M +K+ ID E ++IS+ N+G G+PV H+ E VYVP LIFG LLT
Sbjct: 28 VSLNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLT 87
Query: 146 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNIS 205
SSNYDD+ KK GGRNGYGAKL NIFST+F +ETA + +KQ + NNM K SEP I
Sbjct: 88 SSNYDDDEKKIVGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKI- 146
Query: 206 KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVK 265
K EGD++T ++F+PDL+KF M L+ D+V+LM +R DLAG K VKV LNG ++PV
Sbjct: 147 KHFEGDDYTCITFQPDLSKFKMEKLDKDIVSLMTRRAYDLAGSC-KGVKVMLNGKKLPVN 205
Query: 266 SFAEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIK 313
F YVD+Y K ++ HE VNERW++C+TLSE FQQ+SFVN IAT K
Sbjct: 206 GFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGFQQISFVNSIATTK 261
>RGD|1586156 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10116 "Rattus
norvegicus" [GO:0001764 "neuron migration" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISO]
[GO:0005080 "protein kinase C binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006265 "DNA topological
change" evidence=ISO] [GO:0007409 "axonogenesis" evidence=ISO]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030900 "forebrain development"
evidence=ISO] [GO:0042826 "histone deacetylase binding"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO] [GO:0005694
"chromosome" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0000792 "heterochromatin" evidence=ISO] InterPro:IPR002205
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 SMART:SM00434
RGD:1586156 GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0042826 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819
GO:GO:0006312 GO:GO:0071778 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 HSSP:P06786 EMBL:D14046 IPI:IPI00763824 PIR:B48536
UniGene:Rn.104585 UniGene:Rn.226280 ProteinModelPortal:Q63177
ChEMBL:CHEMBL4672 Genevestigator:Q63177 Uniprot:Q63177
Length = 214
Score = 577 (208.2 bits), Expect = 8.6e-55, P = 8.6e-55
Identities = 114/208 (54%), Positives = 145/208 (69%)
Query: 752 AQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASAR 811
AQ +G V+E SAYHHGEQ+L TI+ +AQ+FVGSNNINLLQP GQFGTR GGKDAAS R
Sbjct: 1 AQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPR 60
Query: 812 YIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYI 871
YIFT LS + R LFP +L +D Q++EP WY+PIIP VL+NG+EGIGTGW+ +
Sbjct: 61 YIFTMLSSLARLLFPAVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKL 120
Query: 872 PNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETT 931
PNY+ R+IV NVRR+L G PM P Y+ F GTI++ + Y V+G I V+ T
Sbjct: 121 PNYDAREIVDNVRRMLEGLDPHPMLPNYKNFKGTIQELGQNQ----YAVSGEIFVVDRNT 176
Query: 932 LRIKELPIRRWTQDYRE-FLESIIDQND 958
+ ELP+R WTQ Y+E LE +++ D
Sbjct: 177 VETTELPVRTWTQVYKEQVLEPMLNGTD 204
>WB|WBGene00021604 [details] [associations]
symbol:Y46H3C.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR002205
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0006261
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 eggNOG:COG0188 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K03164
GeneTree:ENSGT00390000016222 EMBL:FO081587 RefSeq:NP_503483.2
UniGene:Cel.28200 ProteinModelPortal:Q9N4W3 SMR:Q9N4W3 PaxDb:Q9N4W3
EnsemblMetazoa:Y46H3C.4 GeneID:189967 KEGG:cel:CELE_Y46H3C.4
UCSC:Y46H3C.4 CTD:189967 WormBase:Y46H3C.4 InParanoid:Q9N4W3
OMA:KDSASAQ NextBio:944220 Uniprot:Q9N4W3
Length = 616
Score = 364 (133.2 bits), Expect = 5.4e-46, Sum P(3) = 5.4e-46
Identities = 90/243 (37%), Positives = 131/243 (53%)
Query: 666 EAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSM 725
+AI++ FSKKK E RK WL ++ D+K++ + +K+ + D +
Sbjct: 14 DAIDMVFSKKKSEERKDWLSKWMREKK-DRKQQGLAEEYLYDKDTRFVTFKDFVNRELVL 72
Query: 726 VDGLKPGQRKI--LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
L +R I L FK + KV F+ + HG + +A G+A
Sbjct: 73 FSNLD-NERSIPCLVDGFKPG---QRKVL-FACFKRSDK---HGVK-VAQLAGGVADMSA 123
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
+ L ++ GGKD+ASA+YIFT+LSP+TR LFP +L E+ Q+I
Sbjct: 124 YHHGEQSLMTTIVHLAQDYGGKDSASAQYIFTQLSPVTRTLFPSHDDNVLRFLYEENQRI 183
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY PI P VLVNG++GI TGW + IPNYNPR++V N++RL+ GE + + PWY+ F
Sbjct: 184 EPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKNFR 243
Query: 904 GTI 906
G I
Sbjct: 244 GKI 246
Score = 200 (75.5 bits), Expect = 5.4e-46, Sum P(3) = 5.4e-46
Identities = 61/206 (29%), Positives = 95/206 (46%)
Query: 998 LTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXX 1057
L + I S+M LFD+ G ++ +PE I +EF+ R E Y +RK+
Sbjct: 262 LQSVICMSSMVLFDAAGCLRTSTSPEAITQEFYDSRQEKYLQRKEYLLEVLQAQSKRLTN 321
Query: 1058 XVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP----KNSKSIEAVVAGATDXXXXX 1113
RFIL +N EIV N+K+ ++ +L + GF P K + ++ +G D
Sbjct: 322 QARFILAKINKEIVFENKKKVAIVDDLIKMGFDADPVKKWKEEQKLKLRESGEMDEDDLA 381
Query: 1114 XXXXXVVNGVQSI---------DYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKA 1164
GV S Y+YL M I ++ E+ L+ + ++ E+ L+K
Sbjct: 382 TVAVEDDEGVSSAAKAVETKLSGYEYLFGMTILDVSEEETNKLINESEEKMTELRVLKKK 441
Query: 1165 TPESLWVKDLDALDMQLDELDKSDAR 1190
T + LW +DLD L ELDK +AR
Sbjct: 442 TWQDLWHEDLDNF---LSELDKQEAR 464
Score = 45 (20.9 bits), Expect = 5.4e-46, Sum P(3) = 5.4e-46
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1303 VQVPAKKKEPSKR 1315
V+ PAKK EP K+
Sbjct: 573 VEAPAKKAEPKKK 585
Score = 38 (18.4 bits), Expect = 3.7e-29, Sum P(3) = 3.7e-29
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 923 IIEEVNETTLRIKELPIRRWTQDYREFLESIIDQND 958
+I E E ++ L + W + E L++ + + D
Sbjct: 424 LINESEEKMTELRVLKKKTWQDLWHEDLDNFLSELD 459
>UNIPROTKB|Q9N4W3 [details] [associations]
symbol:Y46H3C.4 "Protein Y46H3C.4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR002205
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0006261
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 eggNOG:COG0188 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K03164
GeneTree:ENSGT00390000016222 EMBL:FO081587 RefSeq:NP_503483.2
UniGene:Cel.28200 ProteinModelPortal:Q9N4W3 SMR:Q9N4W3 PaxDb:Q9N4W3
EnsemblMetazoa:Y46H3C.4 GeneID:189967 KEGG:cel:CELE_Y46H3C.4
UCSC:Y46H3C.4 CTD:189967 WormBase:Y46H3C.4 InParanoid:Q9N4W3
OMA:KDSASAQ NextBio:944220 Uniprot:Q9N4W3
Length = 616
Score = 364 (133.2 bits), Expect = 5.4e-46, Sum P(3) = 5.4e-46
Identities = 90/243 (37%), Positives = 131/243 (53%)
Query: 666 EAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSM 725
+AI++ FSKKK E RK WL ++ D+K++ + +K+ + D +
Sbjct: 14 DAIDMVFSKKKSEERKDWLSKWMREKK-DRKQQGLAEEYLYDKDTRFVTFKDFVNRELVL 72
Query: 726 VDGLKPGQRKI--LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
L +R I L FK + KV F+ + HG + +A G+A
Sbjct: 73 FSNLD-NERSIPCLVDGFKPG---QRKVL-FACFKRSDK---HGVK-VAQLAGGVADMSA 123
Query: 784 GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQI 843
+ L ++ GGKD+ASA+YIFT+LSP+TR LFP +L E+ Q+I
Sbjct: 124 YHHGEQSLMTTIVHLAQDYGGKDSASAQYIFTQLSPVTRTLFPSHDDNVLRFLYEENQRI 183
Query: 844 EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
EP WY PI P VLVNG++GI TGW + IPNYNPR++V N++RL+ GE + + PWY+ F
Sbjct: 184 EPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKNFR 243
Query: 904 GTI 906
G I
Sbjct: 244 GKI 246
Score = 200 (75.5 bits), Expect = 5.4e-46, Sum P(3) = 5.4e-46
Identities = 61/206 (29%), Positives = 95/206 (46%)
Query: 998 LTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXX 1057
L + I S+M LFD+ G ++ +PE I +EF+ R E Y +RK+
Sbjct: 262 LQSVICMSSMVLFDAAGCLRTSTSPEAITQEFYDSRQEKYLQRKEYLLEVLQAQSKRLTN 321
Query: 1058 XVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP----KNSKSIEAVVAGATDXXXXX 1113
RFIL +N EIV N+K+ ++ +L + GF P K + ++ +G D
Sbjct: 322 QARFILAKINKEIVFENKKKVAIVDDLIKMGFDADPVKKWKEEQKLKLRESGEMDEDDLA 381
Query: 1114 XXXXXVVNGVQSI---------DYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKA 1164
GV S Y+YL M I ++ E+ L+ + ++ E+ L+K
Sbjct: 382 TVAVEDDEGVSSAAKAVETKLSGYEYLFGMTILDVSEEETNKLINESEEKMTELRVLKKK 441
Query: 1165 TPESLWVKDLDALDMQLDELDKSDAR 1190
T + LW +DLD L ELDK +AR
Sbjct: 442 TWQDLWHEDLDNF---LSELDKQEAR 464
Score = 45 (20.9 bits), Expect = 5.4e-46, Sum P(3) = 5.4e-46
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1303 VQVPAKKKEPSKR 1315
V+ PAKK EP K+
Sbjct: 573 VEAPAKKAEPKKK 585
Score = 38 (18.4 bits), Expect = 3.7e-29, Sum P(3) = 3.7e-29
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 923 IIEEVNETTLRIKELPIRRWTQDYREFLESIIDQND 958
+I E E ++ L + W + E L++ + + D
Sbjct: 424 LINESEEKMTELRVLKKKTWQDLWHEDLDNFLSELD 459
>UNIPROTKB|J3KTB7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001241 InterPro:IPR003594 Pfam:PF02518 PRINTS:PR00418
GO:GO:0005524 GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0006265 GO:GO:0003918 EMBL:AC080112 HGNC:HGNC:11989
Ensembl:ENST00000581055 Uniprot:J3KTB7
Length = 147
Score = 456 (165.6 bits), Expect = 7.5e-42, P = 7.5e-42
Identities = 85/132 (64%), Positives = 109/132 (82%)
Query: 26 TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE 85
++E +YQKK+QLEHILLRPDTYIGS+E TQ +W+Y+E+ + +R +++VPGLYKIFDE
Sbjct: 17 SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDE 75
Query: 86 ILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145
ILVNAADNKQRDPKM ++V ID E++LIS+ N+G G+PV H+ E +YVP LIFG LLT
Sbjct: 76 ILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 135
Query: 146 SSNYDDNVKKTT 157
SSNYDD+ KK T
Sbjct: 136 SSNYDDDEKKVT 147
>UNIPROTKB|Q4G402 [details] [associations]
symbol:TOP2B "DNA topoisomerase II beta" species:9544
"Macaca mulatta" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0005080 "protein kinase C binding" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0042826 "histone deacetylase
binding" evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] InterPro:IPR001241
InterPro:IPR013506 Pfam:PF00204 SMART:SM00433 GO:GO:0005829
GO:GO:0005524 GO:GO:0001764 GO:GO:0005080 GO:GO:0005654
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
GO:GO:0042826 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0000819 GO:GO:0006312
GO:GO:0000792 GO:GO:0071778 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 eggNOG:COG0187
HOGENOM:HOG000216693 OrthoDB:EOG4640B2 EMBL:AY680449
UniGene:Mmu.9538 STRING:Q4G402 InParanoid:Q4G402 BindingDB:Q4G402
Uniprot:Q4G402
Length = 185
Score = 405 (147.6 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 86/184 (46%), Positives = 110/184 (59%)
Query: 270 YVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYV 321
YVD+Y K ++ HE NERW++C+TLSE FQQ+SFVN IAT KGG HVDYV
Sbjct: 1 YVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYV 60
Query: 322 ANQXXXXXXXXXXXXXXXXXXXX-XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFG 380
+Q +WVF+N LI+NP FDSQTKE +TL+ SFG
Sbjct: 61 VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFG 120
Query: 381 SKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDANLAG 439
SKC+LSE+F K + GIVE++L+W FK L KK K ++GI KL+DAN AG
Sbjct: 121 SKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAG 179
Query: 440 GRNS 443
G++S
Sbjct: 180 GKHS 183
>UNIPROTKB|Q23CP4 [details] [associations]
symbol:TTHERM_01335310 "DNA topoisomerase 2" species:312017
"Tetrahymena thermophila SB210" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR003594 InterPro:IPR013759
InterPro:IPR013760 PRINTS:PR00418 SMART:SM00433 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR014721 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164 EMBL:GG662714
RefSeq:XP_001014550.2 ProteinModelPortal:Q23CP4
EnsemblProtists:EAR94305 GeneID:7832067 KEGG:tet:TTHERM_01335310
ProtClustDB:CLSZ2498776 Uniprot:Q23CP4
Length = 784
Score = 246 (91.7 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 66/185 (35%), Positives = 99/185 (53%)
Query: 27 IEEMY-QKKSQLEHILLRPDTYIGSIEKHTQALWIY---EEESKTMIHRTISYVPGLYKI 82
++ Y Q K +L H+ D YIGSI+ IY +E T+ ++ + +PGL +
Sbjct: 1 MQNQYKQMKFEL-HVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTV 59
Query: 83 FDEILVNAADN--KQRDPKMDA-VKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELI 139
EIL NA D +QR K + + D+ I + G G+P+E +++ +++PELI
Sbjct: 60 IGEILTNARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPIE--KQDNIFIPELI 117
Query: 140 FGHLLTSSNYDD---NVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNM 196
F H TSSNY + N K TGG+NGYGAKLTN+ S F +ET + +KQ+
Sbjct: 118 FSHERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLI--FKQLHYEGN 175
Query: 197 GKKSE 201
K S+
Sbjct: 176 TKHSQ 180
Score = 206 (77.6 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 54/210 (25%), Positives = 103/210 (49%)
Query: 303 VSFVNGIATIKGGTHVDYV-----ANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNA 357
+SFVNG+ GGTHV+++ +Q +++ +
Sbjct: 187 ISFVNGLPQ-NGGTHVNFINQIIKQDQLIKNLNVQDQDELEVMKQLGKQYRQNVFIIFSL 245
Query: 358 LIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLS--WANFKQSKDL 415
L+ P++ SQ+K+ L + + EL E+++++ +S +++ L K+ + L
Sbjct: 246 LVHQPSYTSQSKDQLKTNKKDWFDTIEL-EKYIQQQIQQSSLLQELKIEIQQQTKKQQVL 304
Query: 416 KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVF 475
K+ D K ++ + KL+DA R +E C+L+ EGDSA + +GL+ + +G F
Sbjct: 305 KQKDQIKKMNINSVKKLQDAIKIRDRRTE-CSLLCAEGDSAMSFIRSGLTEQQKQIYGRF 363
Query: 476 PLRGKLLNVREASSNQVLNNSEIGNIKKIL 505
PL+GKL+NV + Q+ N + +++ L
Sbjct: 364 PLKGKLMNVNSKTDRQIGENEILSQLQRSL 393
Score = 44 (20.5 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 972 TVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKK 1018
T++ E ++ ++ +Q LL++ K+ T + K IKK
Sbjct: 270 TIELEKYIQQQ----IQQSSLLQELKIEIQQQTKKQQVLKQKDQIKK 312
Score = 38 (18.4 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 980 SEESMMRTKQEGLLKKFKLTTTISTSNMHLF 1010
+ E ++ +Q+ LLK+FK+ S N +F
Sbjct: 489 NNEIKIKKQQKQLLKQFKIDE--SKLNRRIF 517
>UNIPROTKB|Q8EYM0 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 SMART:SM00434 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GO:GO:0009295
GO:GO:0006265 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 EMBL:AE010300 GenomeReviews:AE010300_GR HSSP:P09097
RefSeq:NP_714373.1 ProteinModelPortal:Q8EYM0 GeneID:1153535
KEGG:lil:LA_4193 PATRIC:22389225 HOGENOM:HOG000040410 OMA:TINVITH
ProtClustDB:CLSK575165 BioCyc:LINT189518:GJBB-3319-MONOMER
Uniprot:Q8EYM0
Length = 462
Score = 344 (126.2 bits), Expect = 9.0e-31, Sum P(2) = 9.0e-31
Identities = 113/408 (27%), Positives = 188/408 (46%)
Query: 696 KEKYIK--YSDFVNKELILFS--MADLQRSIPSMVDGLKPGQRKILFCSFK---RN-FIK 747
KE + K + D VN + +S + D R+IP +DGLKP QR+IL+ + RN + K
Sbjct: 10 KESFPKRPFEDQVNDDQRKYSRYVCD-SRAIPHEIDGLKPVQRRILWAMWNSDARNRYTK 68
Query: 748 EAKVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKD 806
KVA + YH HG++S+ + MAQDF +NNI L+ G FG
Sbjct: 69 TVKVAGLA------MGYHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSA- 121
Query: 807 AASARYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGT 865
AS RY +LS + L Y+ N D + EP ++ +P VL+N +GI T
Sbjct: 122 IASPRYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIAT 181
Query: 866 GWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIE 925
G+ +IP + DIV + L + + PWY+ F G ++ ++ +T + T +
Sbjct: 182 GFRCFIPGHRLADIVKSQINYLKSKKPLSLKPWYKDFNGEVKMAETETGNITMSTTFAFK 241
Query: 926 EVNETTLRIKELPIRRWTQD-YREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESM 984
+T L + + P+ W ++ L+ I+++ DS+++ + YS T F V L +
Sbjct: 242 WEGDT-LYLTDSPMN-WNREKVISLLDDILERKDSWLKDYVDYSSQT---FRVELQYKKG 296
Query: 985 MRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQ 1044
+ Q+ ++ F + T M++ G +K + PE+I++ F R +R K
Sbjct: 297 EKPSQKEIMALFN-KEDVQTLAMNVITYDGKLKNFK-PEEIIKRFCDFRKTHLIRRFKRL 354
Query: 1045 XXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
+RFI N E V+ + + D +L+ F F
Sbjct: 355 SGLEEEKIERNSELIRFIKEKWN-EKVIGIKSKKDFEEKLKTSKFKYF 401
Score = 37 (18.1 bits), Expect = 9.0e-31, Sum P(2) = 9.0e-31
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 1140 TLEKVQGLLADRDKLNE 1156
TL + QGL+ + KL E
Sbjct: 430 TLARYQGLVKEDKKLTE 446
>UNIPROTKB|P77993 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243274
"Thermotoga maritima MSB8" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE000512 GenomeReviews:AE000512_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:U49692
PIR:JC4960 RefSeq:NP_228642.1 ProteinModelPortal:P77993 SMR:P77993
DNASU:898504 GeneID:898504 KEGG:tma:TM0833 PATRIC:23936592
Uniprot:P77993
Length = 636
Score = 206 (77.6 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 72/239 (30%), Positives = 110/239 (46%)
Query: 303 VSFVNGIATIKGGTHVDYVAN---QXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALI 359
VSF N I T+ GGTHV + + L ++ +
Sbjct: 271 VSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYV 330
Query: 360 DNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWA-NFKQSKDLKKN 418
NP F+ QTK L + + EE K A +V+T+LS + KQ+++ K
Sbjct: 331 KNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKR 390
Query: 419 DGTKTEDVRGISKLEDANLAG------GRNSEQCTLILTEGDSAKALAMAGLSVVGRDR- 471
E VR + L++ L G + E+ L + EGDSA G + RDR
Sbjct: 391 ---AREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVEGDSA-----GGSAKQARDRE 442
Query: 472 F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
F V P+RGK+LNV ++S +++L N +I +I +G G +++ K LRYG ++IMTD
Sbjct: 443 FQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESK-LRYGRIIIMTD 500
Score = 188 (71.2 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 72/262 (27%), Positives = 115/262 (43%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D D ++V + ++ + V ++G G+PV+IH EEG E
Sbjct: 33 GLHHLVYEVVDNSVDEALAG-YCDWIRVTLHEDGS-VEVEDNGRGIPVDIHPEEGRSALE 90
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGKRLKKYKQVFTNNM 196
++F L + + K +GG +G G + N S + DGK Y+Q +
Sbjct: 91 VVFTVLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKI---YRQRYER-- 145
Query: 197 GKKSEPNISKCKEGD-NWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV 255
GK P + E D + T V FKPD F+ T + D++ + + L L +
Sbjct: 146 GKPVTP-VEVIGETDKHGTIVRFKPDPLIFSETEFDPDILEHRLREIAFLVPGLKIEFED 204
Query: 256 ELNGHRVPVK---SFAEYVDMYPKSVTRFHERVN-ERWEICVT-------LSEGQFQQ-- 302
+NG + K EYV + H+ ++ +R E T + E FQ
Sbjct: 205 RINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTD 264
Query: 303 ------VSFVNGIATIKGGTHV 318
VSF N I T+ GGTHV
Sbjct: 265 SYSEDIVSFANTIKTVDGGTHV 286
Score = 74 (31.1 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DG+HI+ LL+ + + L++ + + P+ + K G+ FY D E
Sbjct: 498 MTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIA-LPPLYRI--KAGRE-EFYVYSDQE 553
Query: 615 A--WKESLGGNASSWSIKYYKGLG 636
+KE L G I+ YKGLG
Sbjct: 554 LAEYKEKLQGKRIE--IQRYKGLG 575
Score = 48 (22.0 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 37 LEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGL-YKIFDEILVNAADNKQ 95
LE + +RP YIGS K +YE ++ Y + + ++ V DN +
Sbjct: 15 LEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGR 74
Query: 96 RDP 98
P
Sbjct: 75 GIP 77
Score = 37 (18.1 bits), Expect = 7.6e-26, Sum P(3) = 7.6e-26
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 1142 EKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKI-KG 1200
EK+QG R ++ + L + PE LW ++ ++ + DA + +I G
Sbjct: 559 EKLQG---KRIEI-QRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMG 614
Query: 1201 N 1201
N
Sbjct: 615 N 615
>UNIPROTKB|O67137 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 PIR:F70388
RefSeq:NP_213700.1 ProteinModelPortal:O67137 SMR:O67137
PRIDE:O67137 GeneID:1193771 KEGG:aae:aq_1026 PATRIC:20959360
OMA:IFETTEF ProtClustDB:PRK14939 BioCyc:AAEO224324:GJBH-733-MONOMER
Uniprot:O67137
Length = 792
Score = 348 (127.6 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 154/538 (28%), Positives = 232/538 (43%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EIL NA D + + V I +++ ++V + G G+PV+IH E G E
Sbjct: 41 GLHHLIWEILDNAVDEAVAGYARN-ISVTIHRDNS-VTVEDDGRGIPVDIHPETGKPAVE 98
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGKRLKKYKQVFTNNM 196
++F L ++ V +GG +G GA + N S I+E DGK Y+ F
Sbjct: 99 MVFTMLGAGGKFEKKVYTYSGGLHGVGASVVNALSEWLIVEVYRDGKI---YRMAFKR-- 153
Query: 197 GKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVE 256
G+ EP + TKVSFKPD F T ++ D+V +KRV +LA L VK E
Sbjct: 154 GEVVEPLHVVGETKKRGTKVSFKPDPEIFETTEIKFDIV---EKRVRELA-YLNPEVKFE 209
Query: 257 LNGHRVP----------VKSFAEYVD--MYP--KSVTRFH-ERVNERWEICVTLSEGQFQ 301
L R+ ++ +Y++ P K + R E+ +I + +
Sbjct: 210 LTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIRIQGEKEGVIVDIAFQYVKDYKE 269
Query: 302 QV-SFVNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVN 356
++ SFVN I T++GGTHV ++ L V
Sbjct: 270 RIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVA 329
Query: 357 ALIDNPAFDSQTKETL---TLRQSSFGSKCE-LSEEFLKKVTAKSGIVETLLSWANFKQS 412
+ NP F+ QTK L ++Q + L+ F KK IVE + A +++
Sbjct: 330 CKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREA 389
Query: 413 KDLKKNDGTKTEDVRGISKLEDANLAGG------RNSEQCTLILTEGDSAKALAMAGLSV 466
K E VR S LE+ L G + +C + L EGDSA G +
Sbjct: 390 AKKAK------ELVRRKSPLEEGVLPGKLADCSETDPSKCEIFLVEGDSA-----GGSAK 438
Query: 467 VGRDRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHL 524
RDR + PLRGK++NV +A ++VL+N EI I LG G + + +K LRY +
Sbjct: 439 QARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGEDLD-LKKLRYHKI 497
Query: 525 MIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLK 582
++MTD D DGSHI+ LL+ F + F P L++
Sbjct: 498 ILMTDA----------------------------DVDGSHIRTLLLTFFYRFMPKLVE 527
Score = 59 (25.8 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 23 PNKTIEEMYQKKSQLEHILLRPDTYIGSI 51
P + E + S LEH+ LRP YIG I
Sbjct: 9 PQEYTAEAIKAVSGLEHVRLRPAMYIGDI 37
Score = 42 (19.8 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 1161 LRKATPESLWVKDLDALDMQLDELDKSDARAEEERM 1196
L + PE LW ++ +L ++ DA AE +R+
Sbjct: 730 LGEMNPEQLWETTMNPKTRRLKKVKIEDA-AEADRI 764
>UNIPROTKB|O08399 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE000520
GenomeReviews:AE000520_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
EMBL:U78094 PIR:H71254 RefSeq:NP_219443.1 ProteinModelPortal:O08399
IntAct:O08399 GeneID:2610807 KEGG:tpa:TP1006 PATRIC:20532137
Uniprot:O08399
Length = 637
Score = 167 (63.8 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 67/260 (25%), Positives = 114/260 (43%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N D D + VV++Q + ++ V ++G G+PV++H EGV E
Sbjct: 34 GLHHLVYEVVDNCIDEAMAG-YCDRITVVLEQGN-VVRVEDNGRGIPVDVHPHEGVSALE 91
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
++ L +D K +GG +G G + N S +E + +Y Q F N+G
Sbjct: 92 VVLTKLHAGGKFDKKSYKVSGGLHGVGVSVVNALS--LWVEVTVYRDGAEYYQKF--NVG 147
Query: 198 KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVEL 257
P + T + ++ D + F T D V L + R +LA L +V ++L
Sbjct: 148 MPLAPVEKRGVSEKRGTIIRWQADPSIFKETVAYDFDVLLTRLR--ELA-FLNSTVVIQL 204
Query: 258 NGHRVPVKSFAEY-----VDMYPKSVTRFHERVNER------------WEICVTLSEGQF 300
R+ E+ + + + R V ER E+ + +G
Sbjct: 205 RDERLATAKQVEFAFEGGIRHFVSYLNRGKSVVPERPLYIEGSKSDVLVEVALQYHDGYT 264
Query: 301 QQV-SFVNGIATIKGGTHVD 319
+ V SFVN I T +GGTH++
Sbjct: 265 ENVQSFVNDINTREGGTHLE 284
Score = 162 (62.1 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 72/260 (27%), Positives = 113/260 (43%)
Query: 290 EICVTLSEGQFQQV-SFVNGIATIKGGTHVD-------YVANQXXXXXXXXXXXXXXXXX 341
E+ + +G + V SFVN I T +GGTH++ VAN
Sbjct: 254 EVALQYHDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKSPKLAKKIEREEK 313
Query: 342 XXXXXXXXXLWVFVNALIDNPAFDSQTKETL---TLR---QSSFGSKCELSEE----FLK 391
L V ++ I P F+ QTK L +R S G + L E L
Sbjct: 314 LVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERLTLYFEQNPGVLT 373
Query: 392 KVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILT 451
K+ KS I E A + + ++ G + + G KL D +L ++ +C + +
Sbjct: 374 KILEKS-IAEAQARLAARRAKEAARRKSGMDSFGLPG--KLADCSL---KDPAKCEVYIV 427
Query: 452 EGDSAKALAMAGLSVVGRDRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQ 509
EGDSA G + GRD + PL GK+LNV + ++VL+N ++ I LG
Sbjct: 428 EGDSA-----GGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTGV 482
Query: 510 GVEYNNVKSLRYGHLMIMTD 529
G +++ + +RY ++IM D
Sbjct: 483 GKDFDLTR-IRYHKVIIMAD 501
Score = 102 (41.0 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 35/132 (26%), Positives = 62/132 (46%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVK-ATNKNGKVLSFYSMPDY 613
M D DGSHI+ LL+ F + P +++ ++ + P+ + A +K K L YS +
Sbjct: 499 MADADVDGSHIRTLLLTFFFRYLPQIIEA-GYVYLAMPPLYRIAWSK--KELYVYSDTER 555
Query: 614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKK-DFVWEDDQDGEAIELAF 672
+ ES+G S +++ YKGLG + E N K V D + + +
Sbjct: 556 DEALESIG-KKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVLSDAVEADRVFSTL 614
Query: 673 SKKKIEARKKWL 684
+ +E R+K++
Sbjct: 615 MGEDVEPRRKFI 626
Score = 41 (19.5 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 37 LEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDE-ILVNAADNKQ 95
LE + RP YIGS + +YE + Y + + ++ +V DN +
Sbjct: 16 LEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQGNVVRVEDNGR 75
Query: 96 RDP 98
P
Sbjct: 76 GIP 78
>TIGR_CMR|BA_3657 [details] [associations]
symbol:BA_3657 "DNA topoisomerase IV, B subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
HOGENOM:HOG000075154 KO:K02622 OMA:TDGTGLH ProtClustDB:PRK05559
TIGRFAMs:TIGR01058 HSSP:P06982 RefSeq:NP_845922.1
RefSeq:YP_020292.2 RefSeq:YP_029649.1 ProteinModelPortal:Q81Y98
IntAct:Q81Y98 DNASU:1085976 EnsemblBacteria:EBBACT00000013021
EnsemblBacteria:EBBACT00000015630 EnsemblBacteria:EBBACT00000022573
GeneID:1085976 GeneID:2818281 GeneID:2850873 KEGG:ban:BA_3657
KEGG:bar:GBAA_3657 KEGG:bat:BAS3392
BioCyc:BANT260799:GJAJ-3454-MONOMER
BioCyc:BANT261594:GJ7F-3563-MONOMER Uniprot:Q81Y98
Length = 654
Score = 178 (67.7 bits), Expect = 4.4e-25, Sum P(4) = 4.4e-25
Identities = 72/254 (28%), Positives = 115/254 (45%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EI+ N+ D D + VVI +++ ISV + G G+P +H+ G PE
Sbjct: 37 GLHHLVYEIVDNSVDEALAGFG-DEISVVIHKDNS-ISVIDKGRGMPTGMHKL-GKPTPE 93
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA--DGKRLKKYKQVFTNN 195
+I L + KT+GG +G GA + N S E+++ T DG Y+Q F N
Sbjct: 94 VILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALS-EWLVVTIKRDGNI---YEQRFENG 149
Query: 196 -MGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVK 254
+ + I K KE T + FKPD F+ T+ + + + L + S+K
Sbjct: 150 GVPVTTLEKIGKTKESG--TTMHFKPDTTIFSTTNYNYETLCERLRESAFLLKGMKISIK 207
Query: 255 VELNG------HRVPVKSFAEYVDMYPKS---VTRFHERVNE-RWEICVTLSEGQFQQV- 303
E N + +++F Y++ S V F N E+ ++G + +
Sbjct: 208 DERNDLEDVFHYETGIEAFVSYLNEEKDSIHPVVYFTGEQNGIEAELAFQFNDGYSENIL 267
Query: 304 SFVNGIATIKGGTH 317
SFVN + T GGTH
Sbjct: 268 SFVNNVRTKDGGTH 281
Score = 144 (55.7 bits), Expect = 4.4e-25, Sum P(4) = 4.4e-25
Identities = 69/257 (26%), Positives = 106/257 (41%)
Query: 290 EICVTLSEGQFQQV-SFVNGIATIKGGTH-------VDYVANQXXXXXXXXXXXXXXXXX 341
E+ ++G + + SFVN + T GGTH + V N+
Sbjct: 253 ELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALLKEKDKNLEG 312
Query: 342 XXXXXXXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVE 401
+ V V + F+ QTK L ++ +SE L ++ V
Sbjct: 313 TDIREGVAAI-VSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEH-LAYFLEENPDVA 370
Query: 402 TLLSWANFKQSKDLKKNDGTKTEDVRGISKLE-DANLAG------GRNSEQCTLILTEGD 454
TLL K ++ + + E G K + + L+G RN ++ L L EGD
Sbjct: 371 TLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNELYLVEGD 430
Query: 455 SAKALAMAGLSVVGRDR-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVE 512
SA G + GRDR F V PLRGK++N +A + N EI I +G G E
Sbjct: 431 SA-----GGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVGNE 485
Query: 513 YNNVKSLRYGHLMIMTD 529
++ V+ + Y ++IMTD
Sbjct: 486 FD-VEDINYDKVVIMTD 501
Score = 102 (41.0 bits), Expect = 4.4e-25, Sum P(4) = 4.4e-25
Identities = 39/152 (25%), Positives = 69/152 (45%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGK--VLSF-YSMP 611
M D DG+HI+ LL+ F + + L++ + + P+ K + GK V+ + +S
Sbjct: 499 MTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIA-LPPLYKVSKGKGKSEVIEYAWSDE 557
Query: 612 DYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQD-GEAIEL 670
+ ++ + +G + ++ YKGLG + + E N V DD E
Sbjct: 558 ELDSVTKKVG---KGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVT 614
Query: 671 AFSKKKIEARKKWL---LQF---EPGNHLDQK 696
K+E R+KW+ +QF E GN L+ +
Sbjct: 615 TLMGDKVEPRRKWIERNVQFGMQEEGNILENE 646
Score = 46 (21.3 bits), Expect = 4.4e-25, Sum P(4) = 4.4e-25
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYE 62
E+ Q LE + RP YIGS + +YE
Sbjct: 10 EDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYE 44
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 748 EAKVAQFSGYVSEHSAYHHGEQSLASTIL 776
EA+ + VSEH AY E +T+L
Sbjct: 346 EAR-SSIDAIVSEHLAYFLEENPDVATLL 373
>UNIPROTKB|A6UX65 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_001345400.1 ProteinModelPortal:A6UX65 SMR:A6UX65
STRING:A6UX65 GeneID:5358744 KEGG:pap:PSPA7_0004 PATRIC:19821910
BioCyc:PAER381754:GHMY-79-MONOMER Uniprot:A6UX65
Length = 806
Score = 309 (113.8 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 116/474 (24%), Positives = 209/474 (44%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D + + I + I+V ++G G+PV+IH+EEGV E
Sbjct: 37 GLHHMVFEVVDNSIDEALAG-YCSEISITIHTDES-ITVRDNGRGIPVDIHKEEGVSAAE 94
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L +DDN K +GG +G G + N S E + + K ++QV+ + G
Sbjct: 95 VIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIR--RHNKVWEQVYHH--G 150
Query: 198 KKSEPNISKCKEGD-NWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLG------ 250
P + + E D + T+V FKP F+ H D++A + + L +G
Sbjct: 151 VPQFP-LREVGETDGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDE 209
Query: 251 KSVKVELNGHRVPVKSFAEYVDMYPKSVTR-FHERVNERWE---ICVTLS-EGQFQQ--V 303
++ K EL + +K+F EY++ +V + FH V + + V L F + +
Sbjct: 210 RTGKEELFKYEGGLKAFVEYLNTNKSAVNQVFHFNVQREEDGVGVEVALQWNDSFNENIL 269
Query: 304 SFVNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALI 359
F N I GGTH+ + L ++ +
Sbjct: 270 CFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKV 329
Query: 360 DNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLS-WANFKQSKDLKKN 418
+P F SQTK+ L + + E+ + F + + ++ + ++++ +
Sbjct: 330 PDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARK 389
Query: 419 DGTKTEDVRGISKLEDANLAGG-RNSEQCTLILTEGDSAKALAMAGLSVVGRDRF--GVF 475
E R L+ A L G + ++ L+E + + G + GR+R +
Sbjct: 390 ---AREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAIL 446
Query: 476 PLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
PL+GK+LNV +A +++L++ E+G + LG G E N+ LRY +++IMTD
Sbjct: 447 PLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD 500
Score = 60 (26.2 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGSHI+ LL+ F P L++ ++ P+ K K GK + + D +
Sbjct: 498 MTDADVDGSHIRTLLLTFFFRQMPELIE-RGYVYIAQPPLYKV--KRGKQEQY--IKDDQ 552
Query: 615 AWKESLGGNA---SSWSI-KYYKGL-GTSTSKEGKEY 646
A +E + +A +S + ++ GL G + K EY
Sbjct: 553 AMEEYMTQSALEDASLHVNEHAPGLAGAALEKLVNEY 589
Score = 37 (18.1 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 1147 LLADRDKLN--EEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE 1194
L+A+ K + + L + PE LW +D ++ ++ DA A ++
Sbjct: 728 LMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQ 777
>TIGR_CMR|CBU_0004 [details] [associations]
symbol:CBU_0004 "DNA gyrase, B subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:NP_819060.2 ProteinModelPortal:Q83FD5
PRIDE:Q83FD5 GeneID:1207924 KEGG:cbu:CBU_0004 PATRIC:17928685
BioCyc:CBUR227377:GJ7S-5-MONOMER Uniprot:Q83FD5
Length = 810
Score = 313 (115.2 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 127/480 (26%), Positives = 204/480 (42%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D + V I + +SV ++G G+P +IH EEG E
Sbjct: 41 GLHHMVFEVVDNSIDEALAG-FCSHIWVTIHADGS-VSVRDNGRGIPTDIHPEEGRSAAE 98
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L +D N K +GG +G G + N S E + + Y Q + MG
Sbjct: 99 VIMTVLHAGGKFDKNAYKVSGGLHGVGISVVNALSEELYMTIRQNGNV--YTQTY--KMG 154
Query: 198 KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVEL 257
P K T++ FKP A F+ T D++A KR+ +LA L V++EL
Sbjct: 155 VPQAPLAVTGKSDKTGTEIRFKPSNAIFSNTEFHYDILA---KRLRELA-FLNLGVRIEL 210
Query: 258 NGHRVPVKSFAEY-------VDMYPKSVTRFHERV----NERWEICVTLS----EGQFQQ 302
R EY V+ K T H V E+ +I V ++ +G FQ+
Sbjct: 211 TDERSGRGDIFEYEGGIKAFVEHLNKKKTPIHSDVFHFSTEKNDIVVEVAMQWNDG-FQE 269
Query: 303 V--SFVNGIATIKGGTHVD----YVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVN 356
F N I GGTH+ + L V ++
Sbjct: 270 TIFCFTNNIPQNDGGTHLAGFRAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLS 329
Query: 357 ALIDNPAFDSQTKETLT---LRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSK 413
+ +P F SQTK+ L ++ + + ++L + ++ I+ + A +
Sbjct: 330 VKVPDPKFSSQTKDKLVSSEVKPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREA 389
Query: 414 DLKKNDGTKTEDVRGISKLEDANLAGGRNSEQ--CTLILTEGDSAKALAMAGLSVVGRDR 471
K D T+ ++V + L LA + + C L L EGDSA G + RDR
Sbjct: 390 ARKARDMTRRKNVLDLGGLP-GKLADCQEKDPALCELFLVEGDSA-----GGSAKQARDR 443
Query: 472 F--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+ PL+GK+LNV +A +++L+++E+G + LG G E N LRY +++MTD
Sbjct: 444 RYQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKEEYNPDKLRYHRIILMTD 503
Score = 59 (25.8 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLK 582
M D DGSHI+ LL+ F + P L++
Sbjct: 501 MTDADVDGSHIRTLLLTFFYRQMPELIE 528
Score = 38 (18.4 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 17 VVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIE 52
++ +AP K + L+ + RP YIG +
Sbjct: 2 IMSVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTD 37
Score = 37 (18.1 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 1142 EKVQGLLADRDK-LN-EEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE 1194
E ++ + + K LN + L + P+ LW +D +L + DA +E
Sbjct: 727 EALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVMADE 781
>UNIPROTKB|Q9KPD9 [details] [associations]
symbol:VC_2431 "Topoisomerase IV, subunit B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR
PIR:G82078 RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 162 (62.1 bits), Expect = 8.5e-22, Sum P(3) = 8.5e-22
Identities = 59/177 (33%), Positives = 88/177 (49%)
Query: 359 IDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETL--LSWAN-FKQSKDL 415
+ +P F QTKE L+ RQS+ + + F + K + E L + AN + +
Sbjct: 324 MQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRAS 383
Query: 416 KKNDGTKTEDVRGI-SKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F- 472
KK K + KL D + +E L L EGDSA G + RDR F
Sbjct: 384 KKVVRKKIASGPALPGKLTDCTVQDLNRTE---LFLVEGDSA-----GGSAKQARDREFQ 435
Query: 473 GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
V PLRGK+LN E S++QVL + E+ +I LG+ + +N+++LRYG + I+ D
Sbjct: 436 AVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDP--DSDNLEALRYGKVCILAD 490
Score = 143 (55.4 bits), Expect = 8.5e-22, Sum P(3) = 8.5e-22
Identities = 68/252 (26%), Positives = 108/252 (42%)
Query: 85 EILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLL 144
E++ N+ D ++V++ + L V + G G+PV+IH EE V ELI L
Sbjct: 38 EVIDNSVDEALAG-YASKIQVILHADQSL-EVIDDGRGMPVDIHPEEKVSGVELILCKLH 95
Query: 145 TSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNI 204
+ + + +GG +G G + N S +E A + + Y+ F + K +E +
Sbjct: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVAVRRDGQVYEIAFEHG-DKVTELTV 152
Query: 205 S-KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSV----KVELNG 259
+ C + T V F PD F+ + V L+ C G + KV N
Sbjct: 153 TGTCGRRNTGTSVHFWPDTKYFDSPNFS--VSRLINNLRAKAVLCPGLEIIFTDKVNNNE 210
Query: 260 HRV----PVKSF-AEYVDMY---PKS--VTRFHERVNER-WEICVTLSEG-QFQQVSFVN 307
HR +K + AE V Y P+ F + W + + L EG + S+VN
Sbjct: 211 HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAV-IWLPEGGELITESYVN 269
Query: 308 GIATIKGGTHVD 319
I T +GGTHV+
Sbjct: 270 LIPTAQGGTHVN 281
Score = 89 (36.4 bits), Expect = 8.5e-22, Sum P(3) = 8.5e-22
Identities = 33/136 (24%), Positives = 60/136 (44%)
Query: 553 CFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPD 612
C + D DG HI LL + +L+K V + P+ + GK + FY++ D
Sbjct: 486 CILADADSDGLHIATLLCALFTRHFRALVKAGHVYVA-MPPLYRIDC--GKEV-FYALDD 541
Query: 613 YE--AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDG--EAI 668
E E L + +++ +KGLG + +E + + + DD + E +
Sbjct: 542 QEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMM 601
Query: 669 ELAFSKKKIEARKKWL 684
++ KK+ + R+ WL
Sbjct: 602 DMLLGKKRADDRRAWL 617
>TIGR_CMR|VC_2431 [details] [associations]
symbol:VC_2431 "topoisomerase IV, subunit B" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:3.40.50.670 KO:K02622 ProtClustDB:PRK05559
TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR PIR:G82078
RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 162 (62.1 bits), Expect = 8.5e-22, Sum P(3) = 8.5e-22
Identities = 59/177 (33%), Positives = 88/177 (49%)
Query: 359 IDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETL--LSWAN-FKQSKDL 415
+ +P F QTKE L+ RQS+ + + F + K + E L + AN + +
Sbjct: 324 MQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRAS 383
Query: 416 KKNDGTKTEDVRGI-SKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F- 472
KK K + KL D + +E L L EGDSA G + RDR F
Sbjct: 384 KKVVRKKIASGPALPGKLTDCTVQDLNRTE---LFLVEGDSA-----GGSAKQARDREFQ 435
Query: 473 GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
V PLRGK+LN E S++QVL + E+ +I LG+ + +N+++LRYG + I+ D
Sbjct: 436 AVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDP--DSDNLEALRYGKVCILAD 490
Score = 143 (55.4 bits), Expect = 8.5e-22, Sum P(3) = 8.5e-22
Identities = 68/252 (26%), Positives = 108/252 (42%)
Query: 85 EILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLL 144
E++ N+ D ++V++ + L V + G G+PV+IH EE V ELI L
Sbjct: 38 EVIDNSVDEALAG-YASKIQVILHADQSL-EVIDDGRGMPVDIHPEEKVSGVELILCKLH 95
Query: 145 TSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNI 204
+ + + +GG +G G + N S +E A + + Y+ F + K +E +
Sbjct: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVAVRRDGQVYEIAFEHG-DKVTELTV 152
Query: 205 S-KCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSV----KVELNG 259
+ C + T V F PD F+ + V L+ C G + KV N
Sbjct: 153 TGTCGRRNTGTSVHFWPDTKYFDSPNFS--VSRLINNLRAKAVLCPGLEIIFTDKVNNNE 210
Query: 260 HRV----PVKSF-AEYVDMY---PKS--VTRFHERVNER-WEICVTLSEG-QFQQVSFVN 307
HR +K + AE V Y P+ F + W + + L EG + S+VN
Sbjct: 211 HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAV-IWLPEGGELITESYVN 269
Query: 308 GIATIKGGTHVD 319
I T +GGTHV+
Sbjct: 270 LIPTAQGGTHVN 281
Score = 89 (36.4 bits), Expect = 8.5e-22, Sum P(3) = 8.5e-22
Identities = 33/136 (24%), Positives = 60/136 (44%)
Query: 553 CFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPD 612
C + D DG HI LL + +L+K V + P+ + GK + FY++ D
Sbjct: 486 CILADADSDGLHIATLLCALFTRHFRALVKAGHVYVA-MPPLYRIDC--GKEV-FYALDD 541
Query: 613 YE--AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDG--EAI 668
E E L + +++ +KGLG + +E + + + DD + E +
Sbjct: 542 QEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMM 601
Query: 669 ELAFSKKKIEARKKWL 684
++ KK+ + R+ WL
Sbjct: 602 DMLLGKKRADDRRAWL 617
>UNIPROTKB|Q8A277 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982
RefSeq:NP_812341.1 ProteinModelPortal:Q8A277 GeneID:1074051
KEGG:bth:BT_3429 PATRIC:21061865
BioCyc:BTHE226186:GJXV-3494-MONOMER Uniprot:Q8A277
Length = 653
Score = 170 (64.9 bits), Expect = 2.3e-21, Sum P(4) = 2.3e-21
Identities = 71/260 (27%), Positives = 114/260 (43%)
Query: 290 EICVTLSEGQFQQV-SFVNGIATIKGGTHVD----YVANQXXXXXXXXXXXXXXXXXXXX 344
EI + + G + V S+VN I TI+GGTH+ +
Sbjct: 266 EIAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVEISG 325
Query: 345 XXXXXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEE----FLKK--VTAKSG 398
L ++ + P F+ QTK L G+ + E +L++ AK+
Sbjct: 326 DDFREGLTAVISVKVAEPQFEGQTKTKLG-NNEVMGAVDQAVGEVLAYYLEEHPKEAKT- 383
Query: 399 IVETLLSWANFKQSKDLKKNDGTKTEDVRG---ISKLEDANLAGGRNSEQCTLILTEGDS 455
IV+ ++ A + + + + + G KL D + ++ +C L L EGDS
Sbjct: 384 IVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCS---DKDPSKCELFLVEGDS 440
Query: 456 AKALAMAGLSVVGRDRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEY 513
A G + GR+R + PLRGK+LNV +A ++ L + EI NI LG+ G E
Sbjct: 441 A-----GGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTED 495
Query: 514 N----NVKSLRYGHLMIMTD 529
+ N++ LRY ++IMTD
Sbjct: 496 DSKEANIEKLRYHKIIIMTD 515
Score = 151 (58.2 bits), Expect = 2.3e-21, Sum P(4) = 2.3e-21
Identities = 68/267 (25%), Positives = 116/267 (43%)
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYV 135
+ GL+ + EI+ N+ D D ++V I++++ I+V ++G G+PV+ H++E
Sbjct: 40 IKGLHHLVYEIVDNSIDEALAG-YCDHIEVTINEDNS-ITVQDNGRGIPVDYHEKEKKSA 97
Query: 136 PELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNN 195
E+ L +D K +GG +G G N ST + ++ Y+Q +
Sbjct: 98 LEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCVNALSTHMTTQVFRNGKI--YQQEY--E 153
Query: 196 MGKKSEPNISKCKEGD-NWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVK 254
+GK ++ + D T+ F PD F T + ++A R+ +LA L ++
Sbjct: 154 IGKPLY-SVKEVGVSDITGTRQQFWPDDTIFTETVYDYKILA---SRLRELA-YLNAGLR 208
Query: 255 VELNGHRV------PVKSFAEYVDMYPKSVTRFHERVNERW----------------EIC 292
+ L RV KS Y + + RF E E EI
Sbjct: 209 ISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESSREHLINDVIYLNSEKQGIPIEIA 268
Query: 293 VTLSEGQFQQV-SFVNGIATIKGGTHV 318
+ + G + V S+VN I TI+GGTH+
Sbjct: 269 IMYNTGFSENVHSYVNNINTIEGGTHL 295
Score = 76 (31.8 bits), Expect = 2.3e-21, Sum P(4) = 2.3e-21
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGSHI L++ F + P +++ +L P+ K GKV Y D +
Sbjct: 513 MTDADVDGSHIDTLIMTFFFRYMPQIIQ-NGYLYIATPPLYLC--KKGKVEE-YCWTDAQ 568
Query: 615 AWK--ESLGGNA-SSWSIKYYKGLGTSTSKE 642
K ++ GG ++ + YKGLG +++
Sbjct: 569 RQKFIDTYGGGLENAVHTQRYKGLGEMNAQQ 599
Score = 37 (18.1 bits), Expect = 2.3e-21, Sum P(4) = 2.3e-21
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 37 LEHILLRPDTYIGSIE-KHTQALWIYE 62
LE + RP YIG I K L +YE
Sbjct: 24 LEAVRKRPAMYIGDISIKGLHHL-VYE 49
>TIGR_CMR|SO_3899 [details] [associations]
symbol:SO_3899 "DNA topoisomerase IV, B subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:QARDKEF
RefSeq:NP_719430.1 ProteinModelPortal:Q8EAK3 SMR:Q8EAK3
GeneID:1171539 KEGG:son:SO_3899 PATRIC:23527480 Uniprot:Q8EAK3
Length = 628
Score = 277 (102.6 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 119/466 (25%), Positives = 195/466 (41%)
Query: 85 EILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLL 144
E++ N+ D ++VV+ ++ L V + G G+PV+IH EEG+ ELI L
Sbjct: 38 EVIDNSVDEALAG-HATKIEVVLHTDNSL-EVTDDGRGMPVDIHPEEGIPGVELILTKLH 95
Query: 145 TSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNI 204
+ + + +GG +G G + N S +E + + Y F N K E +
Sbjct: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSRR--VEVTVRRDGQVYDIAFENGF-KVEELKV 152
Query: 205 S-KCKEGDNWTKVSFKPDLAKFNMTHLEDD-VVALMKKRVVDLAGCLGKSVKVELNG-HR 261
+ C + T+V F PD + F+ + + ++ L++ + V G K N H
Sbjct: 153 TGTCGRRNTGTRVHFWPDTSYFDSPNFSNSKLIYLLRAKAVLCPGLRIKFTNKHTNEVHE 212
Query: 262 VPVKS-FAEYVD-------MYPKS--VTRFHERVNER-WEICVTLSEGQFQQVSFVNGIA 310
+S +Y+ M P+ + F ++ W I G+ S+VN I
Sbjct: 213 WYYESGLTDYLKAAVGDNIMLPEEPFIGSFKGQIEAADWAITWLPEGGESINESYVNLIP 272
Query: 311 TIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLW---VFVNAL-IDNPAFDS 366
T GGTHV+ Q +W F+ ++ + +P F
Sbjct: 273 TPLGGTHVNGF-RQGLLESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAG 331
Query: 367 QTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDV 426
QTKE L+ RQSS + + F + + + + E+L K LK + V
Sbjct: 332 QTKEKLSSRQSSAFVSGIVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAKKVARKKV 391
Query: 427 RGISKLEDANL-AGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F-GVFPLRGKLLN 483
L G++ + L L EGDSA G + RDR F + PLRGK+LN
Sbjct: 392 TSGPALPGKLTDCSGQDPMRGELFLVEGDSA-----GGSAKQARDREFQAIMPLRGKILN 446
Query: 484 VREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
E ++QVL + E+ +I +G + N++ LRYG + I+ D
Sbjct: 447 TWEVDASQVLASQEVHDISVAIGCDP--DSNDISELRYGKICILAD 490
Score = 58 (25.5 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 32/140 (22%), Positives = 61/140 (43%)
Query: 553 CFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPD 612
C + D DG HI LL + L++ + + P+ + GK + +Y++ D
Sbjct: 486 CILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIA-MPPLFRIDI--GKDV-YYALDD 541
Query: 613 YEAWKESLGG--NASSWSIKY----YKGLGTSTSKEGKEYFQNITLHKK-DFVWEDDQDG 665
E KE + NA + K +KGLG + +E + + +D ++
Sbjct: 542 AE--KEGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEET 599
Query: 666 EAI-ELAFSKKKIEARKKWL 684
+++ ++ +KK+ RK WL
Sbjct: 600 DSLMDMLLAKKRSPDRKNWL 619
Score = 37 (18.1 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 1276 LAKLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDS 1330
L ++N + K++ + + G+ E +Q+ +P+ R Q + E +DS
Sbjct: 548 LDRINAENKKGKVQVTRFK-GLGEMNPLQLRETTMDPNTRRLVQLTIDDAEETDS 601
>TIGR_CMR|CHY_2705 [details] [associations]
symbol:CHY_2705 "DNA gyrase, B subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075156 RefSeq:YP_361487.1
ProteinModelPortal:Q3A8P7 SMR:Q3A8P7 STRING:Q3A8P7 GeneID:3726578
KEGG:chy:CHY_2705 PATRIC:21278431
BioCyc:CHYD246194:GJCN-2703-MONOMER Uniprot:Q3A8P7
Length = 635
Score = 251 (93.4 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 116/478 (24%), Positives = 208/478 (43%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D + ++V+I ++ I+V ++G G+PV+IH E G E
Sbjct: 39 GLHHLVYEVVDNSIDEALAG-FCNRIEVIIHKDGS-ITVADNGRGIPVDIHPEVGKPAVE 96
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
++ L + K +GG +G G + N S E++ E + Y Q F+
Sbjct: 97 VVLTMLHAGGKFGGGGYKVSGGLHGVGVSVVNALS-EWL-EVRIKRDGNLYYQKFSRGEP 154
Query: 198 KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVA--LMKKRVVDL-AGCLGKSVK 254
I K K T ++FKPD F D +A L++ ++ + K +
Sbjct: 155 ITELKIIGKSKS--TGTIITFKPDAEIFETVEFNYDTLAKRLLELSYLNKNVKIILKDER 212
Query: 255 V---ELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSE---GQFQQ--VSFV 306
+ E+ H +K + +Y++ + + + E+ E+ V ++ F + +SF
Sbjct: 213 INKEEIFEHSGGIKDYLKYLNKNKEPLHKIIYFEKEKDEVVVEVALQYCNSFSENILSFT 272
Query: 307 NGIATIKGGTH-VDY---VANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNP 362
N I T +GGTH + + + L ++ + +P
Sbjct: 273 NNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDP 332
Query: 363 AFDSQTKETLT---LRQSSFGSKCELSEEFLKKVTAKSG-IVETLLSWANFKQS----KD 414
F+ QTK L +R + +L++ A ++E + A +++ ++
Sbjct: 333 QFEGQTKTKLVNTEVRSIVDSIVSDYLSTYLEENPAVGKKLIENAIRAARAREAARKARE 392
Query: 415 LKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F- 472
L + T E KL D + ++ C L L EGDSA G + GRDR F
Sbjct: 393 LARRK-TALESNTLPGKLADCS---EKDPSLCELYLVEGDSA-----GGSAKQGRDRRFQ 443
Query: 473 GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYN-NVKSLRYGHLMIMTD 529
+ PLRGK+LNV ++ +++L N EI + LG GV+ + +++ RY L+IMTD
Sbjct: 444 AILPLRGKILNVEKSRLDKILANEEIRAMITALGT--GVDKDFDIEKARYHRLIIMTD 499
Score = 86 (35.3 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 34/132 (25%), Positives = 59/132 (44%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF-YSMPDY 613
M D DG+HI+ LL+ F + + L++ ++ P+ K K GK+ + YS +
Sbjct: 497 MTDADVDGAHIRTLLLTFFYRYLRPLIE-NGYVYIAQPPLYKV--KKGKLEKYLYSDDEL 553
Query: 614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNI-TLHKKDFVWEDDQDGEAIELAF 672
E + +G + I+ YKGLG ++ E N T ED + I
Sbjct: 554 ERYLNEIGREGVT--IQRYKGLGEMDPEQLWETTMNPETRTILKVTLEDAAKADEIFTIL 611
Query: 673 SKKKIEARKKWL 684
K+E R++++
Sbjct: 612 MGDKVEPRREFI 623
Score = 43 (20.2 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 28 EEMYQKKSQLEHILLRPDTYIGSI-EKHTQALWIYE 62
EE+ K LE + RP YIGS EK L +YE
Sbjct: 13 EEIQVLKG-LEGVRKRPAMYIGSTNEKGLHHL-VYE 46
>UNIPROTKB|Q7NHM9 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P06982 RefSeq:NP_925452.1
ProteinModelPortal:Q7NHM9 GeneID:2600907 KEGG:gvi:gvip344
PATRIC:22044491 BioCyc:GVIO251221:GH9A-2555-MONOMER Uniprot:Q7NHM9
Length = 644
Score = 175 (66.7 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 69/240 (28%), Positives = 102/240 (42%)
Query: 303 VSFVNGIATIKGGTHVD----YVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNAL 358
+ F N I TI GGTH++ + L ++
Sbjct: 270 LGFANNIRTIDGGTHLEGLKAVLTRTFNSFARKANKLKDGDKNLTGEHVREGLTAVLSVK 329
Query: 359 IDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKN 418
+ NP F+ QTK L + +SE+ + + +V ++L A QS ++
Sbjct: 330 VPNPEFEGQTKTKLGNPEVRGIVDGVISEKLTEYLEFHPDVVASILEKA--LQSMQAEEA 387
Query: 419 DGTKTED-VRGISKLEDANLAG------GRNSEQCTLILTEGDSAKALAMAGLSVVGRDR 471
K D VR S LE + L G R+ + + L EGDSA G + GRDR
Sbjct: 388 -ARKARDLVRRKSALESSTLPGKLADCQSRDPAESEVFLVEGDSA-----GGSAKQGRDR 441
Query: 472 -F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
F + PLRGK+LN+ A ++ N+EI + LGL E +V LRY ++IMTD
Sbjct: 442 RFQAILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLKTEEFDVGRLRYHRIIIMTD 501
Score = 120 (47.3 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 65/262 (24%), Positives = 103/262 (39%)
Query: 78 GLYKIFDEILVNAADNKQRDP-KMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVP 136
GL+ + EI+ N+ D K A+ + D ++ + G G+P + H G
Sbjct: 34 GLHHLVYEIVDNSVDEALAGHCKHIAISLGADGS---ATITDDGRGIPTDTHPRTGKSTI 90
Query: 137 ELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNM 196
E + L + K +GG +G GA + N ST I+ + K+Y Q F +
Sbjct: 91 ETVLTVLGAGGKFGGGGYKVSGGLHGVGAAVVNALST--ILTATIWREGKQYIQRFHRGI 148
Query: 197 GKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV- 255
+ +S + T +SF PD F T ++ D L+ R +LA L V+
Sbjct: 149 PEGGLA-VSSDSQKRRGTMISFLPDPEIFT-TGVDFDFDTLLS-RFRELA-FLNAGVEFR 204
Query: 256 --ELNGHRVPVKSFA------EYVDMYPKSVTRFH--------ERVNERWEICVTLSEGQ 299
+L G +S+ EYV + H ER E + S
Sbjct: 205 FSDLRGETERTESYIYEGGIREYVKYMTREKAALHPDIIFINQERDGVSVECALQWSTDV 264
Query: 300 FQQ--VSFVNGIATIKGGTHVD 319
+ + F N I TI GGTH++
Sbjct: 265 YNDNVLGFANNIRTIDGGTHLE 286
Score = 83 (34.3 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 31/139 (22%), Positives = 62/139 (44%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF---YSMP 611
M D DG+HI+ LL+ F + + L++ ++ P+ K + G+ + YS
Sbjct: 499 MTDADVDGAHIRTLLLTFFYRYKRDLVE-QGYIYIAQPPLYKISIGGGRNIDVRYCYSEQ 557
Query: 612 DYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNI-TLHKKDFVWEDDQDGEAIEL 670
+ EA L N + ++ +KGLG + + E N T + ED + + +
Sbjct: 558 EKEAILRGLREN-QKYELQRFKGLGEMQADQLWETTMNPETRTLRQVTIEDAAEADRVFN 616
Query: 671 AFSKKKIEARKKWLLQFEP 689
++E R++++ + P
Sbjct: 617 ILMGDRVEPRREFIETYGP 635
Score = 50 (22.7 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 29 EMYQKKSQLEHILLRPDTYIGS 50
E Q LEH+ RP YIGS
Sbjct: 8 EQIQVLEGLEHVRKRPGMYIGS 29
>TIGR_CMR|CBU_0064 [details] [associations]
symbol:CBU_0064 "DNA topoisomerase IV, B subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:NP_819117.2
ProteinModelPortal:Q83F84 PRIDE:Q83F84 GeneID:1207934
KEGG:cbu:CBU_0064 PATRIC:17928803 OMA:GNVCVAR
BioCyc:CBUR227377:GJ7S-66-MONOMER Uniprot:Q83F84
Length = 641
Score = 254 (94.5 bits), Expect = 9.2e-21, Sum P(2) = 9.2e-21
Identities = 115/453 (25%), Positives = 186/453 (41%)
Query: 103 VKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNG 162
V+V++ ++ L V + G G+P+++H E + ELI L + + + +GG +G
Sbjct: 66 VEVILYKDGSL-EVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLHG 124
Query: 163 YGAKLTNIFSTEFIIETA-DGKRLKKYKQVFTNN-MGKKSEPNISKCKEGDNWTKVSFKP 220
G + N S + ++ DGK Y+ F + K P + C + ++ T + F P
Sbjct: 125 VGISVVNALSKKLTVQVKKDGKI---YQMDFAHGEKTSKLRP-VGSCNKSESGTSIHFWP 180
Query: 221 DLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV--ELNGHRVPVKSFAEYVDMYPKSV 278
D F+ V AL C G +V E G R+ +AE + Y
Sbjct: 181 DSHYFDSVKF--GVSALKHTMRAKAVLCPGLTVHFIDENTGQRLQWY-YAEGLKTYLADS 237
Query: 279 TRFHERVNER--------------WEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQ 324
R ER+ E W + + + + S+VN I T +GGTHV+ +
Sbjct: 238 LRDRERLPEEPWVGSFSGETEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNGLRT- 296
Query: 325 XXXXXXXXXXXXXXXXXXXXXXXXXXLW----VFVNALIDNPAFDSQTKETLTLRQSSFG 380
+W ++ + P F QTKE LT RQS+
Sbjct: 297 GLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVF 356
Query: 381 SKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGG 440
+ + F + I +TL K L+ + + + V L LA
Sbjct: 357 VSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKKIERKKVTTGPALP-GKLADC 415
Query: 441 RNSE--QCTLILTEGDSAKALAMAGLSVVGRDR-F-GVFPLRGKLLNVREASSNQVLNNS 496
S+ QC L L EGDSA G + RD+ F + PLRGK+LN E + QVL +
Sbjct: 416 ILSDPMQCELFLVEGDSA-----GGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQ 470
Query: 497 EIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+ +I +G+ + +N++ LRYG + I+ D
Sbjct: 471 TVHDIAIAIGVDP--DSSNLEGLRYGKICILAD 501
Score = 79 (32.9 bits), Expect = 9.2e-21, Sum P(2) = 9.2e-21
Identities = 36/141 (25%), Positives = 62/141 (43%)
Query: 553 CFMLAQDHDGSHIKGLLIN-FIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMP 611
C + D DG HI LL F+ F+P L + + + P+ + GK + FY++
Sbjct: 497 CILADADSDGYHIATLLCALFMKHFYP--LVVSGHVYVAMPPLYRIDV--GKDV-FYALD 551
Query: 612 DYEAWKESLGGNASSWSIK------YYKGLGTSTSKEGKEYFQNI-TLHKKDF-VWEDDQ 663
+ E KE + + +K +KGLG + +E N T H V D+
Sbjct: 552 EEE--KEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDK 609
Query: 664 DGEAIELAFSKKKIEARKKWL 684
+ +++ +KK+ R+ WL
Sbjct: 610 TEQLLDMLLAKKRAADRRDWL 630
>UNIPROTKB|A6VD80 [details] [associations]
symbol:parE "DNA topoisomerase IV, B subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:YP_001351015.1
ProteinModelPortal:A6VD80 SMR:A6VD80 STRING:A6VD80 GeneID:5355906
KEGG:pap:PSPA7_5696 PATRIC:19832877 OMA:QARDKEF
BioCyc:PAER381754:GHMY-5702-MONOMER Uniprot:A6VD80
Length = 629
Score = 263 (97.6 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 124/475 (26%), Positives = 200/475 (42%)
Query: 85 EILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLL 144
E++ N+ D +V+V++ Q++ L V + G G+PV+IH EEGV ELI L
Sbjct: 37 EVIDNSVDEALAG-HAKSVQVILHQDNSL-EVIDDGRGMPVDIHPEEGVPGVELILTKLH 94
Query: 145 TSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNI 204
+ + + +GG +G G + N ST +E + +Y+ F + I
Sbjct: 95 AGGKFSNKNYQFSGGLHGVGISVVNALSTR--VEVRVKRDANEYRMTFADGFKDTDLEVI 152
Query: 205 SKCKEGDNWTKVSFKPD-----LAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVE--L 257
+ T V F PD AKF+++ L+ L K V+ C G SV E
Sbjct: 153 GTVGRRNTGTSVHFWPDPKYFDSAKFSVSRLKH---VLKAKAVL----CPGLSVVFEDKN 205
Query: 258 NGHRVP------VKSF-AEYVDMYPK--------SVTRFHERVNERWEICVTLSEGQFQQ 302
G RV ++S+ + V P+ ++ E V+ W + G+ Q
Sbjct: 206 TGERVEWHFEDGLRSYLTDAVAELPRLPDEPFCGNLEGSKEAVS--WALLWLPEGGESVQ 263
Query: 303 VSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLW---VFVNAL- 358
S+VN I T +GGTHV+ + Q +W FV ++
Sbjct: 264 ESYVNLIPTAQGGTHVNGL-RQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMK 322
Query: 359 IDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKN 418
+ P F QTKE L+ R+++ + + F + + I L A + LK
Sbjct: 323 MQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNEHAEIGLQLAELAISNAGRRLKAG 382
Query: 419 DGTKTEDVRGISKLEDANLA--GGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F-GV 474
+ + + L LA G+ + L L EGDSA G + RD+ F +
Sbjct: 383 KKVERKKITQGPALP-GKLADCAGQEPMRAELFLVEGDSA-----GGSAKQARDKEFQAI 436
Query: 475 FPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
PLRGK+LN E +VL + E+ +I +G+ G +++ LRYG + I+ D
Sbjct: 437 MPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDPGA--SDLAQLRYGKICILAD 489
Score = 68 (29.0 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 34/139 (24%), Positives = 59/139 (42%)
Query: 553 CFMLAQDHDGSHIKGLLIN-FIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMP 611
C + D DG HI LL F+ F P L++ V + P+ + GK + +Y++
Sbjct: 485 CILADADSDGLHIATLLCALFVRHFRP-LVEAGHVYVA-MPPLYRIDL--GKDI-YYALD 539
Query: 612 DYE--AWKESLGGNASSWS--IKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDG-- 665
+ E E L + +KGLG + +E + + + +D G
Sbjct: 540 EAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTL 599
Query: 666 EAIELAFSKKKIEARKKWL 684
E +++ +KK+ RK WL
Sbjct: 600 EIMDMLLAKKRAGDRKSWL 618
>UNIPROTKB|Q3KMH2 [details] [associations]
symbol:gyrB_1 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_327998.1 ProteinModelPortal:Q3KMH2
STRING:Q3KMH2 GeneID:3687234 KEGG:cta:CTA_0208 PATRIC:32022282
BioCyc:CTRA315277:GI4C-250-MONOMER Uniprot:Q3KMH2
Length = 804
Score = 194 (73.4 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 79/291 (27%), Positives = 128/291 (43%)
Query: 264 VKSFAEYVD-----MYPKSVTRFHERVNE----RWEICVTLSEGQFQQV-SFVNGIATIK 313
++SF Y++ ++P + R + +E + + G + + S+ N I T +
Sbjct: 231 IQSFVSYLNQNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQ 290
Query: 314 GGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX----LWVFVNALIDNPAFDSQTK 369
GGTH+ + L V+ + NP F+ QTK
Sbjct: 291 GGTHLTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTK 350
Query: 370 ETLTLRQSSFGSKCE-LSEEFLKKVTAKSG-IVETLLSWANFK-QSKDLKKNDGTKTEDV 426
+ L S GS + +S E L ++ I +T++ Q+++ K T +
Sbjct: 351 QKLG--NSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELT--L 406
Query: 427 RGISKLEDANLAGG------RNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F-GVFPLR 478
R S L+ A L G ++ E+C + + EGDSA G + GRDR F + P+R
Sbjct: 407 RK-SALDSARLPGKLIDCLEKDPEKCEMYIVEGDSA-----GGSAKQGRDRRFQAILPIR 460
Query: 479 GKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
GK+LNV +A +V N EIG+I LG G + N+ LRY ++IMTD
Sbjct: 461 GKILNVEKARLQKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTD 511
Score = 135 (52.6 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 58/224 (25%), Positives = 100/224 (44%)
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEG--- 132
V GL+ + E++ N+ D + V ++ E IS+ ++G G+P++IH++E
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRIL--EDGGISISDNGRGIPIQIHEKESAKQ 92
Query: 133 ---VYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGKRLKKY 188
+ E++ L +D + K +GG +G G N S +FI + DG+ Y
Sbjct: 93 GREISALEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEKFIAKVFKDGQA---Y 149
Query: 189 KQVFTNNMGKKSEPNISKC-KEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAG 247
F+ + + K G T+V F PD A F+ T + D A++ KR+ +LA
Sbjct: 150 SMEFSRGAPLTTLQVLGPTDKRG---TEVLFYPDPAIFS-TCVFDR--AILMKRLRELA- 202
Query: 248 CLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEI 291
L + V + R F + V Y + F +N+ EI
Sbjct: 203 FLNRGVTIVFEDDRDT--GFDKVVFFYEGGIQSFVSYLNQNKEI 244
Score = 59 (25.8 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 26/104 (25%), Positives = 43/104 (41%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGSHI+ LL+ F + +L++ + V P + +K S + +
Sbjct: 509 MTDADVDGSHIRTLLLTFFYRHMSALIE--NECVYIAQPPLYRVSKKKDFRYILSEKEMD 566
Query: 615 AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFV 658
+ +LG S I + L E E F N+ L + F+
Sbjct: 567 GYLLNLGTKESQ--IVFDDTL-RDLRGEALETFVNLILEVESFI 607
Score = 37 (18.1 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 805 KDAASARYIFTRL 817
KDA A +IFT L
Sbjct: 766 KDAVEADHIFTML 778
>UNIPROTKB|P20083 [details] [associations]
symbol:parE species:83333 "Escherichia coli K-12"
[GO:0030541 "plasmid partitioning" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0007062 "sister
chromatid cohesion" evidence=IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046677 GO:GO:0006261 EMBL:U28377
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000075154 GO:GO:0030541 KO:K02622 ProtClustDB:PRK05559
EMBL:M58409 EMBL:L22026 PIR:D65090 RefSeq:NP_417502.1
RefSeq:YP_491222.1 PDB:1S14 PDB:1S16 PDB:3FV5 PDBsum:1S14
PDBsum:1S16 PDBsum:3FV5 ProteinModelPortal:P20083 SMR:P20083
DIP:DIP-10441N IntAct:P20083 MINT:MINT-1223307 PRIDE:P20083
EnsemblBacteria:EBESCT00000001166 EnsemblBacteria:EBESCT00000016957
GeneID:12933399 GeneID:947501 KEGG:ecj:Y75_p2956 KEGG:eco:b3030
PATRIC:32121470 EchoBASE:EB0681 EcoGene:EG10687 OMA:GFIQSYC
BioCyc:EcoCyc:EG10687-MONOMER BioCyc:ECOL316407:JW2998-MONOMER
BindingDB:P20083 EvolutionaryTrace:P20083 Genevestigator:P20083
HAMAP:MF_00938 TIGRFAMs:TIGR01055 Uniprot:P20083
Length = 630
Score = 241 (89.9 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 114/470 (24%), Positives = 194/470 (41%)
Query: 85 EILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLL 144
E++ N+ D V V++ + L V + G G+PV+IH EEGV ELI L
Sbjct: 38 EVIDNSVDEALAG-HAKRVDVILHADQSL-EVIDDGRGMPVDIHPEEGVPAVELILCRLH 95
Query: 145 TSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKKYKQVFTNNMGKKSEPN 203
+ + + +GG +G G + N S + DG+ Y F N +
Sbjct: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ---VYNIAFENGEKVQDLQV 152
Query: 204 ISKCKEGDNWTKVSFKPDLAKFNMTHLE-DDVVALMKKRVVDLAGCLGKSVKVELNG--- 259
+ C + + T V F PD F+ + ++K + V G + + K E+N
Sbjct: 153 VGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG-VEITFKDEINNTEQ 211
Query: 260 ---HRVPVKSF-AEYVDMYPKS-----VTRFH---ERVNERWEICVTLSEGQFQQVSFVN 307
++ + + AE V+ P + F E V+ W + G+ S+VN
Sbjct: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD--WALLWLPEGGELLTESYVN 269
Query: 308 GIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLW---VFVNAL-IDNPA 363
I T++GGTHV+ + Q +W +V ++ + +P
Sbjct: 270 LIPTMQGGTHVNGL-RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQ 328
Query: 364 FDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKT 423
F QTKE L+ RQ + + + F+ + E L A + ++
Sbjct: 329 FAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVR 388
Query: 424 EDVRGISKLEDANLAG--GRNSEQCTLILTEGDSAKALAMAGLSVVGRDRF--GVFPLRG 479
+ + L LA ++ + L L EGDSA G + RDR + PL+G
Sbjct: 389 KKLTSGPALP-GKLADCTAQDLNRTELFLVEGDSA-----GGSAKQARDREYQAIMPLKG 442
Query: 480 KLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
K+LN E SS++VL + E+ +I +G+ + +++ LRYG + I+ D
Sbjct: 443 KILNTWEVSSDEVLASQEVHDISVAIGIDP--DSDDLSQLRYGKICILAD 490
Score = 79 (32.9 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 32/138 (23%), Positives = 61/138 (44%)
Query: 553 CFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPD 612
C + D DG HI LL + +L+K V + P+ + GK + +Y++ +
Sbjct: 486 CILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA-LPPLYRIDL--GKEV-YYALTE 541
Query: 613 YE--AWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEA--- 667
E E L +++ +KGLG + +E + + + DD+D +
Sbjct: 542 EEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDA 601
Query: 668 -IELAFSKKKIEARKKWL 684
+++ +KK+ E R+ WL
Sbjct: 602 MMDMLLAKKRSEDRRNWL 619
>TIGR_CMR|SPO_1253 [details] [associations]
symbol:SPO_1253 "DNA topoisomerase IV, B subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055
RefSeq:YP_166498.1 ProteinModelPortal:Q5LU07 GeneID:3192730
KEGG:sil:SPO1253 PATRIC:23375809 Uniprot:Q5LU07
Length = 652
Score = 181 (68.8 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 78/273 (28%), Positives = 120/273 (43%)
Query: 267 FAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVD--YVANQ 324
FA VD K F+ W I T S F Q S+ N + T +GGTH + A
Sbjct: 254 FAGTVDFTEK----FNTPGKVEWAINWTPSRDGFIQ-SYCNTVPTPEGGTHEAGFWSAIL 308
Query: 325 XXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTKETL-TLRQSSF--GS 381
V+ I P F QTK+ L T+ G+
Sbjct: 309 KGIRAYGELISNKKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATVEAQRLVEGA 368
Query: 382 KCELSEEFLKKVTAKSG-IVETLLSWAN--FKQSKDLKKNDGTKTEDVRGISKLEDANLA 438
+ + +L T +G I++ L+ A ++ ++ + T T+ +R KL D +
Sbjct: 369 VRDHFDNWLAADTKSAGAILDFLVLRAEERIRRRQEKETQRKTATKKLRLPGKLVDCSAT 428
Query: 439 GGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRF--GVFPLRGKLLNVREASSNQVLNNS 496
+E L + EGDSA G + + RDR + PLRGK+LNV A+S+++ +N
Sbjct: 429 SREGTE---LFIVEGDSA-----GGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQ 480
Query: 497 EIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
EI ++ + LG+ G +N V LRY ++IMTD
Sbjct: 481 EISDLTQALGVGLGTRFN-VDDLRYDKIIIMTD 512
Score = 108 (43.1 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 31/119 (26%), Positives = 59/119 (49%)
Query: 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQE-EGVYVPE 137
L+ + E+L N+ D + ++V + ++ L +V ++G G+PV+ H + G E
Sbjct: 44 LHHMVAEVLDNSMDEAVAG-FANRIEVELHADYAL-TVRDNGRGIPVDPHPKFPGKSALE 101
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNM 196
+I L + +T+GG +G GA + N S +++ A K L Y+Q F+ +
Sbjct: 102 VILCTLHAGGKFSGKAYQTSGGLHGVGASVVNALSDSMVVQVARDKLL--YEQRFSRGL 158
Score = 81 (33.6 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DG+HI LL+ F + ++ L P+ + T + K + + +
Sbjct: 510 MTDADVDGAHIAALLMTFFFTQMRPMIDT-GHLYLACPPLYRLT-QGAKRVYCLDEAERD 567
Query: 615 AW-KESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVW-EDDQDGEAIELA- 671
W + LGG + +KGLG +K+ K+ N K V ++D+ GE +L
Sbjct: 568 EWLAKGLGGKGKI-DVSRFKGLGEMDAKDLKDTTMNPETRKLIRVTIDEDEPGETGDLVE 626
Query: 672 -FSKKKIEARKKWL 684
KK E R +++
Sbjct: 627 RLMGKKPELRFQYI 640
>TIGR_CMR|APH_0716 [details] [associations]
symbol:APH_0716 "DNA gyrase, B subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_505297.1 ProteinModelPortal:Q2GK04 SMR:Q2GK04
STRING:Q2GK04 GeneID:3930586 KEGG:aph:APH_0716 PATRIC:20950116
BioCyc:APHA212042:GHPM-734-MONOMER Uniprot:Q2GK04
Length = 793
Score = 166 (63.5 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 62/213 (29%), Positives = 100/213 (46%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ NA D + + +VI + ISV ++G G+P++IH+EEG+ E
Sbjct: 34 GLHHMAYEVIDNAIDEALAG-FCNKIDIVIAADGS-ISVTDNGRGIPIDIHEEEGISAAE 91
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L +D N K +GG +G G + N S+ +E K ++Y F G
Sbjct: 92 VIMTQLHAGGKFDHNSYKVSGGLHGVGVSVVNALSSW--LELVIYKEGREYFMRFEE--G 147
Query: 198 KKSEP--NISKC--KEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSV 253
K P + +C K+G T V F P F+ T D + ++ R+ +L+ L +V
Sbjct: 148 KAVAPLKMVGECGNKKG---TCVRFMPSSDVFSFT---DFSYSTLENRIRELS-FLNSNV 200
Query: 254 KVELNGHRV-PV--KSFAEYVDMYPKSVTRFHE 283
+ L R PV +F D K V+ F E
Sbjct: 201 SISLKDLRESPVLESNFGNVSDAATKGVSLFVE 233
Score = 144 (55.7 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 71/288 (24%), Positives = 120/288 (41%)
Query: 264 VKSFAEYVDMYPKSVTRFH--ERVNERWEICVTLS----EGQFQQV-SFVNGIATIKGGT 316
V F EY+D VT + +EI V +S + ++ + F N I +GGT
Sbjct: 228 VSLFVEYLDRNKTPVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGT 287
Query: 317 HV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTKETL 372
H+ + L ++ + +P F SQTK+ L
Sbjct: 288 HLAGFRSALTRCVNNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKL 347
Query: 373 TLRQSSFGSKC----ELSEEFLKKVTAKSGIVETLLSWANFKQS----KDLKKNDGTKTE 424
++ + +LS F +VE ++ A +++ +++ K+ GT
Sbjct: 348 VSSEARLVVESIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTL-- 405
Query: 425 DVRGI-SKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRF--GVFPLRGKL 481
D I KL D ++ E L + EG+SA G + GRDR V LRGK+
Sbjct: 406 DFTSIPGKLADCQ---EKSPELSELFIVEGNSA-----GGSAKQGRDRRCQAVLSLRGKI 457
Query: 482 LNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
LNV ++ L++SEI ++ +G G+ ++ +RY ++IMTD
Sbjct: 458 LNVERVGLDRTLSSSEITSLIMAIGSNIGIGSFDISKVRYHKIIIMTD 505
Score = 64 (27.6 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGSHI+ LL+ F + L+ +L P+ K T K+ K Y D E
Sbjct: 503 MTDADVDGSHIRTLLLTFFFRYMRELIDA-GYLYIAQPPLYKLT-KHKK--DTYIKND-E 557
Query: 615 AWKESLGGNAS 625
A + + GNA+
Sbjct: 558 ALSDYIVGNAT 568
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1137 GTLTLEKVQGLLADRDKLNEEVDDL 1161
GTL + G LAD + + E+ +L
Sbjct: 403 GTLDFTSIPGKLADCQEKSPELSEL 427
>UNIPROTKB|Q3KL33 [details] [associations]
symbol:gyrB_2 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
HOGENOM:HOG000075156 ProtClustDB:PRK05559 RefSeq:YP_328487.1
ProteinModelPortal:Q3KL33 STRING:Q3KL33 GeneID:3687725
KEGG:cta:CTA_0718 PATRIC:32023360 OMA:VFESQTK
BioCyc:CTRA315277:GI4C-739-MONOMER Uniprot:Q3KL33
Length = 605
Score = 212 (79.7 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 124/504 (24%), Positives = 214/504 (42%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQE-EGVYVP 136
G+Y +F E++ NA D + V+ H ++H +GD + I E G+ +
Sbjct: 41 GIYTLFKEVVDNAID-----------EFVMGYGH---TIHITGDAHELSIRDEGRGIPLG 86
Query: 137 ELI--FGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTN 194
++I + T + Y +V + G NG G K N S F + + K+ K F+
Sbjct: 87 KVIDCVSKINTGAKYTQDVFHFSVGLNGVGLKAVNALSQHFSVRSVRNKKFLKAS--FSK 144
Query: 195 NMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVK 254
+ +E ++ +G T+V F PD F + V +KK++ L +
Sbjct: 145 GILLHTEQGATQDPDG---TEVVFSPDHELFENFSFQ---VEFLKKKIRQYT-YLHPGLT 197
Query: 255 VELNGHRVP-----VKSFAEYVD---MYPKSVTRFHERVNERWEICVTLSEGQFQQVSFV 306
+ NG R+ + F E V +Y +T H + + T SE F SFV
Sbjct: 198 IIYNGERIVSTRGLLDLFEEEVQTPLLY-SPITFQHSDLAFLFSHTETSSEQYF---SFV 253
Query: 307 NGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDS 366
NG T GGTH+ VA + + I +P F+S
Sbjct: 254 NGQETTDGGTHL--VAFKEGIVKGVNEFFGKNFSSQDIREGLAGC---IAIKIASPIFES 308
Query: 367 QTKETL--TLRQSSFGSKC-ELSEEFLKK-VTAKSGIVETL-LSWANFKQSKDLKKNDGT 421
QTK L T ++ + E LKK ++ I E + L+ K ++ LK+
Sbjct: 309 QTKNKLGNTNIRAELAKRVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKD 368
Query: 422 KTEDVR-GISKLEDANLAGGRNS---EQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPL 477
K + + I KL D NS + ++ +TEG+SA A +A + + + VF L
Sbjct: 369 KQKKLHYKIPKLRDCKFHLTDNSLYGKNSSIFITEGESASASILASRNPLTQ---AVFSL 425
Query: 478 RGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLS 537
RGK +NV + + N E+ + LGL + +++++LRY +++ TD A +
Sbjct: 426 RGKPMNVFSSKEETIYKNDELFYLTTALGLHK----DSLQNLRYNQVILATD----ADVD 477
Query: 538 FL-LWFILIFAWITTFCFMLAQDH 560
+ + ++I ++ TF ++A +H
Sbjct: 478 GMHIRNLMITFFLKTFLPLVASNH 501
Score = 107 (42.7 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 559 DHDGSHIKGLLINF-IHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWK 617
D DG HI+ L+I F + +F P + F++E TP+ K +K+ +FY + E
Sbjct: 475 DVDGMHIRNLMITFFLKTFLPLVASNHLFILE--TPLFKVRHKDA---TFYCYSEEEKLS 529
Query: 618 --ESLGGNASSWSIKYYKGLGTSTSKEGKEY 646
E +G SS I +KGLG + KE K +
Sbjct: 530 TIEHIGKKESSLEITRFKGLGEISPKEFKSF 560
Score = 46 (21.3 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 35 SQLEHILLRPDTYIGSIEKHTQA 57
+ L+HI LR YIG + +QA
Sbjct: 16 ASLDHIRLRAGMYIGRLGDGSQA 38
>UNIPROTKB|P0AES6 [details] [associations]
symbol:gyrB species:83333 "Escherichia coli K-12"
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;IMP] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046677 "response to antibiotic"
evidence=IEA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 EMBL:L10328 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0009295 EMBL:X04341
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 PDB:3NUH PDBsum:3NUH
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK14939
EMBL:D87842 EMBL:M15548 PIR:D65172 RefSeq:YP_026241.1
RefSeq:YP_491736.1 PDB:1AJ6 PDB:1EI1 PDB:1KZN PDB:3G7E PDB:4DUH
PDBsum:1AJ6 PDBsum:1EI1 PDBsum:1KZN PDBsum:3G7E PDBsum:4DUH
ProteinModelPortal:P0AES6 SMR:P0AES6 DIP:DIP-48005N IntAct:P0AES6
PaxDb:P0AES6 PRIDE:P0AES6 EnsemblBacteria:EBESCT00000002623
EnsemblBacteria:EBESCT00000017095 GeneID:12930543 GeneID:948211
KEGG:ecj:Y75_p3474 KEGG:eco:b3699 PATRIC:32122895 EchoBASE:EB0419
EcoGene:EG10424 BioCyc:EcoCyc:EG10424-MONOMER
BioCyc:ECOL316407:JW5625-MONOMER BioCyc:MetaCyc:EG10424-MONOMER
BindingDB:P0AES6 ChEMBL:CHEMBL1826 DrugBank:DB00817
EvolutionaryTrace:P0AES6 Genevestigator:P0AES6 Uniprot:P0AES6
Length = 804
Score = 270 (100.1 bits), Expect = 8.7e-19, Sum P(4) = 8.7e-19
Identities = 119/482 (24%), Positives = 207/482 (42%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ NA D + + V I ++ +SV + G G+P IH EEGV E
Sbjct: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAE 92
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L +DDN K +GG +G G + N S + +E + K ++Q++ + G
Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK--LELVIQREGKIHRQIYEH--G 148
Query: 198 KKSEPNISKCKEGDNWTKVSFKPDLAKF-NMTHLEDDVVALMKKRVVDLAGCLGKSVKVE 256
P + T V F P L F N+T E +++A KR+ +L+ L V +
Sbjct: 149 VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILA---KRLRELS-FLNSGVSIR 204
Query: 257 LNGHRVP----------VKSFAEYVDMYPKSVTRFHERV----NER----WEICVTLSEG 298
L R +K+F EY++ K+ T H + E+ E+ + ++G
Sbjct: 205 LRDKRDGKEDHFHYEGGIKAFVEYLN---KNKTPIHPNIFYFSTEKDGIGVEVALQWNDG 261
Query: 299 QFQQ--VSFVNGIATIKGGTHVD----YVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLW 352
FQ+ F N I GGTH+ + L
Sbjct: 262 -FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 320
Query: 353 VFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSE---EFLKKVTAKSGIVETLLSWANF 409
V+ + +P F SQTK+ L + + +++E E+L + + IV + A
Sbjct: 321 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR 380
Query: 410 KQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGR 469
+ + + T+ + ++ L LA + + L+E + + G + GR
Sbjct: 381 AREAARRAREMTRRKGALDLAGLP-GKLADCQERDPA---LSELYLVEGDSAGGSAKQGR 436
Query: 470 DRFG--VFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIM 527
+R + PL+GK+LNV +A +++L++ E+ + LG G + N LRY ++IM
Sbjct: 437 NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 496
Query: 528 TD 529
TD
Sbjct: 497 TD 498
Score = 56 (24.8 bits), Expect = 8.7e-19, Sum P(4) = 8.7e-19
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLK 582
M D DGSHI+ LL+ F + P +++
Sbjct: 496 MTDADVDGSHIRTLLLTFFYRQMPEIVE 523
Score = 41 (19.5 bits), Expect = 8.7e-19, Sum P(4) = 8.7e-19
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 1135 AIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE 1194
A+ L E +GL R K L + PE LW +D ++ + DA A ++
Sbjct: 722 ALDWLVKESRRGLSIQRYK------GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQ 775
Score = 40 (19.1 bits), Expect = 8.7e-19, Sum P(4) = 8.7e-19
Identities = 30/129 (23%), Positives = 51/129 (39%)
Query: 903 GGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIR 962
G T+ AS A + ++ E N T I + RR+ + L+ +I Q +
Sbjct: 563 GATLHTNASAPALAGEALEKLVSEYNATQKMINRME-RRYP---KAMLKELIYQ-PTLTE 617
Query: 963 GFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKY--D 1020
SD+ TV V + +Q G KF + T + +LF+ ++ + D
Sbjct: 618 A--DLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTN---AEQNLFEPIVRVRTHGVD 672
Query: 1021 TPEQILEEF 1029
T + EF
Sbjct: 673 TDYPLDHEF 681
Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 604 VLSFYSMPDYEAWKESLGGNASSWSIKYYKGLG 636
V SF D+ KES G SI+ YKGLG
Sbjct: 716 VASFEQALDWLV-KESRRG----LSIQRYKGLG 743
>UNIPROTKB|Q8A3C1 [details] [associations]
symbol:BT_3033 "DNA topoisomerase IV subunit B"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE015928
GenomeReviews:AE015928_GR GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075156 KO:K02622
ProtClustDB:PRK05559 HSSP:P06982 OMA:VFESQTK RefSeq:NP_811945.1
ProteinModelPortal:Q8A3C1 GeneID:1074020 KEGG:bth:BT_3033
PATRIC:21061047 BioCyc:BTHE226186:GJXV-3097-MONOMER Uniprot:Q8A3C1
Length = 625
Score = 217 (81.4 bits), Expect = 9.4e-19, Sum P(3) = 9.4e-19
Identities = 124/480 (25%), Positives = 197/480 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDA-VKVVIDQEHDL-ISVHNSGDGVPVEIHQEEGVYV 135
G+Y + E++ N+ D + KM A K+ I E +L +SV + G G+P +G V
Sbjct: 51 GIYVLLKEVIDNSID----EFKMQAGKKIEITVEENLRVSVRDYGRGIP------QGKLV 100
Query: 136 PELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGKRLKKYKQVFTN 194
E + L T YD K + G NG G K N S+ F + + DGK ++ T
Sbjct: 101 -EAV-SVLNTGGKYDSKAFKKSVGLNGVGVKAVNALSSRFEVRSYRDGK-----VRIATF 153
Query: 195 NMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVK 254
+ G + ++++ E DN T + F+PD F + + + M + L +
Sbjct: 154 SKGNL-QTDVTQDTEEDNGTFIFFEPDNTLFVNYCFKPEFIETMLRNYT----YLNTGLA 208
Query: 255 VELNGHRVPVKSFAEYVDMYPKSVTR--FHERVN---ERWEICVTLSEGQF--QQVSFVN 307
+ NGHR+ ++ VD+ ++T + V+ E EI T + GQ+ + SFVN
Sbjct: 209 IIYNGHRILSRN--GLVDLLNDNMTATGLYPIVHLKGEDIEIAFTHT-GQYGEEYYSFVN 265
Query: 308 GIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQ 367
G T +GGTH + VN ++ P F+SQ
Sbjct: 266 GQHTTQGGTHQSAFKEHIARTIKEFFNKNMDYTDIRNGLVAA---IAVN--VEEPIFESQ 320
Query: 368 TKETLTLRQSSFGSKC--ELSEEFLK----KVTAKSGIVETLLSWANFKQSKDLKKNDG- 420
TK L + G + +F+K K+ V ++ + K+ K G
Sbjct: 321 TKTKLGSTNMTPGGVTVNKYVGDFIKLEVDNFLHKNADVAEVMQQKIQESEKERKAIAGV 380
Query: 421 TKTEDVRGIS------KLEDANL----AGGRNSEQCTLI-LTEGDSAKALAMAGLSVVGR 469
TK R KL D + G+ E+ + I +TEGDSA V
Sbjct: 381 TKLARERAKKANLHNRKLRDCRIHLNDPKGKGMEEDSCIFITEGDSASGSITKSRDV--- 437
Query: 470 DRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+ VF LRGK LN + V N E ++ L ++ G+E LRY +++ TD
Sbjct: 438 NTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEDGIE-----GLRYNKVIVATD 492
Score = 97 (39.2 bits), Expect = 9.4e-19, Sum P(3) = 9.4e-19
Identities = 35/108 (32%), Positives = 48/108 (44%)
Query: 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKE 618
D DG HI+ LLI F F+P L+K + TP+ + NK K + YS +
Sbjct: 494 DVDGMHIRLLLITFFLQFFPDLIKKGHVYI-LQTPLFRVRNKK-KTVYCYSEDERVNAIN 551
Query: 619 SLGGNASSWSIKYYKGLGTSTSKEGKEYF------QNITLHKKDFVWE 660
L N I +KGLG + E K + + +TL K D V E
Sbjct: 552 ELSPNPE---ITRFKGLGEISPDEFKHFIGKDMRLEQVTLRKTDAVKE 596
Score = 47 (21.6 bits), Expect = 9.4e-19, Sum P(3) = 9.4e-19
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 35 SQLEHILLRPDTYIGSI 51
S +EH+ RP YIG +
Sbjct: 26 SDMEHVRTRPGMYIGRL 42
>TIGR_CMR|SPO_0155 [details] [associations]
symbol:SPO_0155 "DNA gyrase, B subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_165427.1 ProteinModelPortal:Q5LWU8
SMR:Q5LWU8 GeneID:3194940 KEGG:sil:SPO0155 PATRIC:23373557
Uniprot:Q5LWU8
Length = 805
Score = 267 (99.0 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 124/482 (25%), Positives = 210/482 (43%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N D D V V I + +SV ++G G+PV+IH EEGV E
Sbjct: 41 GLHHMVYEVVDNGIDEALAG-HADHVTVKIHADSS-VSVADNGRGIPVDIHAEEGVSAAE 98
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFST--EFIIETADGKRLKKYKQVFTNN 195
+I L +D N K +GG +G G + N S E I + + ++++ T
Sbjct: 99 VIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRHGKEHVARFERGDTVE 158
Query: 196 ----MGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGK 251
+G+ + ++ + + T S + + L + R++ + +
Sbjct: 159 HLRVVGECGDRTGTEVRFLASTTTFSNLDYVFETLEKRLRELAFLNSGVRIILIDERPAE 218
Query: 252 SVKVELNGHRVPVKSFAEYVD-----MYPKSVTRFHERVNERWEICVTLSEGQFQQV-SF 305
++ EL + V+ F +Y+D + P + ER + EI + ++ + V F
Sbjct: 219 RIETELF-YEGGVREFVKYLDRSKSPVMPAPIYFKGERDDIGVEIAMWWNDSYHETVLPF 277
Query: 306 VNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDN 361
N I GGTHV + L ++ + +
Sbjct: 278 TNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPD 337
Query: 362 PAFDSQTKETLT---LR---QSSFGSK-CELSEE---FLKKVTAKSGIVETLLSWANFKQ 411
P F SQTK+ L +R ++ K E EE K++ K I+E L+ ++
Sbjct: 338 PKFSSQTKDKLVSSEVRPAVENLVNEKLAEWFEENPNVAKQIVGK--IIEAALAREAARK 395
Query: 412 SKDLKKNDGTKTE-DVRGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGR 469
+++L + KT DV ++ KL+D + ++ + + L EGDSA G + GR
Sbjct: 396 ARELTRR---KTAMDVNYLAGKLKDCS---EKDPSKTEVFLVEGDSA-----GGSAQTGR 444
Query: 470 DRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIM 527
DR V PLRGK+LNV A +++L + EIGN+ LG G + N+ LRY ++IM
Sbjct: 445 DRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNISKLRYHKIVIM 504
Query: 528 TD 529
TD
Sbjct: 505 TD 506
Score = 58 (25.5 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKV 604
M D DG+HI+ LL+ F + P L++ +L P+ K +V
Sbjct: 504 MTDADVDGAHIRTLLLTFFYRQMPELIE-GGYLYIAQPPLYKVARGKSEV 552
Score = 42 (19.8 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 1137 GTLTLEKVQGLLADRDK-LN-EEVDDLRKATPESLWVKDLDALDMQLDELDKSD-ARAEE 1193
G LTL K +L + +K L + L + PE LW LD L ++ +D A++
Sbjct: 719 GPLTLLKA--ILDEGEKGLTLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVNDMVEADD 776
Query: 1194 ERMKIKGN 1201
K+ G+
Sbjct: 777 IFTKLMGD 784
Score = 37 (18.1 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 899 YRGFGGTIEKTASKEAGVTYTVTGIIEEVNE 929
++G G + K + E V +T ++EE +
Sbjct: 566 HQGVEGAVLKLGNGEEIVGQDLTRVVEEARQ 596
>UNIPROTKB|Q23CY2 [details] [associations]
symbol:TTHERM_00052080 "DNA topoisomerase II (N-terminal
region) protein" species:312017 "Tetrahymena thermophila SB210"
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013759 InterPro:IPR013760 PRINTS:PR00418 SMART:SM00433
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR014721 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
ProtClustDB:CLSZ2498776 EMBL:GG662712 RefSeq:XP_001014904.1
ProteinModelPortal:Q23CY2 EnsemblProtists:EAR94448 GeneID:7827097
KEGG:tet:TTHERM_00052080 Uniprot:Q23CY2
Length = 523
Score = 261 (96.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 69/189 (36%), Positives = 102/189 (53%)
Query: 27 IEEMY-QKKSQLEHILLRPDTYIGSIEKHTQALWIY---EEESKTMIHRTISYVPGLYKI 82
++ Y Q K +L H+ D YIGSI+ IY +E T+ ++ + +PGL +
Sbjct: 1 MQNQYKQMKFEL-HVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTV 59
Query: 83 FDEILVNAADN--KQRDPKMDA-VKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELI 139
EIL NA D +QR K + + D+ I + G G+P+E +++ +++PELI
Sbjct: 60 IGEILTNARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPIE--KQDNIFIPELI 117
Query: 140 FGHLLTSSNYDD---NVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNM 196
F H TSSNY + N K TGG+NGYGAKLTN+ S F +ET + +KQ+
Sbjct: 118 FSHERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLI--FKQLHYEGN 175
Query: 197 GKKSEPNIS 205
K SEP I+
Sbjct: 176 TKHSEPQIT 184
Score = 207 (77.9 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 63/258 (24%), Positives = 123/258 (47%)
Query: 258 NGHRVPVKS-FAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQ--VSFVNGIATIKG 314
NG+ + + +EY ++ K ++++ +E SE Q +SFVNG+ G
Sbjct: 142 NGYGAKLTNVLSEYFEVETKYDNLIFKQLH--YEGNTKHSEPQITHDIISFVNGLPQ-NG 198
Query: 315 GTHVDYV-----ANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTK 369
GTHV+++ +Q +++ + L+ P++ SQ+K
Sbjct: 199 GTHVNFINQIIKQDQLIKNLNVQDQDELEVMKQLGKQYRQNVFIIFSLLVHQPSYTSQSK 258
Query: 370 ETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLS--WANFKQSKDLKKNDGTKTEDVR 427
+ L + + EL E+++++ +S +++ L K+ + LK+ D K ++
Sbjct: 259 DQLKTNKKDWFDTVEL-EKYIQQQIQQSSLLQELKIEIQQQTKKQQVLKQKDQIKKMNIN 317
Query: 428 GISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREA 487
+ KL+DA R +E C+L+ EGDSA + +GL+ + +G FPL+GKL+NV
Sbjct: 318 SVKKLQDAIKIRDRRTE-CSLLCAEGDSAMSFIRSGLTEQQKQIYGRFPLKGKLMNVNSK 376
Query: 488 SSNQVLNNSEIGNIKKIL 505
+ Q+ N + +++ L
Sbjct: 377 TDRQIGENEILSQLQRSL 394
Score = 45 (20.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 972 TVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKK 1018
TV+ E ++ ++ +Q LL++ K+ T + K IKK
Sbjct: 271 TVELEKYIQQQ----IQQSSLLQELKIEIQQQTKKQQVLKQKDQIKK 313
Score = 40 (19.1 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 980 SEESMMRTKQEGLLKKFKLTTTISTSNMHLF 1010
++E ++ +Q+ LLK+FK+ S N +F
Sbjct: 474 NDEIKIKKQQKQLLKQFKIDE--SKLNRRIF 502
>TIGR_CMR|NSE_0721 [details] [associations]
symbol:NSE_0721 "DNA gyrase, B subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_506597.1 ProteinModelPortal:Q2GD49
SMR:Q2GD49 STRING:Q2GD49 GeneID:3932056 KEGG:nse:NSE_0721
PATRIC:22681457 BioCyc:NSEN222891:GHFU-733-MONOMER Uniprot:Q2GD49
Length = 783
Score = 266 (98.7 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 126/490 (25%), Positives = 212/490 (43%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+++ E++ N+ D A++VVID + ISV ++G G+P ++H E GV E
Sbjct: 36 GLHQMVYEVVDNSVDESLAG-YCTAIEVVIDVDGS-ISVEDNGRGMPTDMHGE-GVSAAE 92
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGKRLKKYKQVFTNNM 196
+I L +D + K +GG +G G + N S + DGK + + F N
Sbjct: 93 VIMTQLHAGGKFDQSSYKVSGGLHGVGVSVVNALSDWLKLTIYRDGK--VHFAE-FENGE 149
Query: 197 GKKSEPNISKCKEGDNWTKVSFKPDLAKF-NMTH-----LEDDVVAL------MKKRVVD 244
+S +C + T V F P + F N T LE+ L ++ ++D
Sbjct: 150 TVRSLSVTGECGDKTG-TLVHFLPSRSTFKNTTEVSFSTLENRFRELSFLNPGLRISLLD 208
Query: 245 L--AGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERV-----NERWEICVTLSE 297
+ GK V G + F Y+D + + RV + ++ + ++
Sbjct: 209 MRKGSSTGKVVFFSSGG----TEEFVAYLDRSKQPIHSTPIRVVGGVDSIAIDVSMQWND 264
Query: 298 GQFQQV-SFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVN 356
++ V F N I GGTH+ + + + ++
Sbjct: 265 SYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHNYIVKENLIKKDKVVVSGEDVREGLS 324
Query: 357 ALID----NPAFDSQTKETLTLRQ----------SSFGSKCELSEEFLKKVTAKSGIVET 402
A++ +P F SQTKE L + + S E + + + K +VE+
Sbjct: 325 AILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSDALASWLEENPSSARVIARK--VVES 382
Query: 403 LLSWANFKQSKDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAM 461
L+ K+++DL ++ G + + G KL D ++ E L++ EGDSA
Sbjct: 383 ALAREAAKKARDLTRRKGGLEITTLPG--KLADCQ---EKSPELSELLIVEGDSA----- 432
Query: 462 AGLSVVGRDRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSL 519
G + GRDR V PLRGK+LNV + ++V+ ++EIGN+ LG G E N+ +
Sbjct: 433 GGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSIGEEEFNIDKI 492
Query: 520 RYGHLMIMTD 529
RY ++IMTD
Sbjct: 493 RYHKIIIMTD 502
Score = 53 (23.7 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKV 604
M D DG HI+ LL+ F + +++ +L TP+ K K V
Sbjct: 500 MTDADVDGLHIRTLLLTFFFRYARPIVE-RGYLYIAQTPLYKVMRKGADV 548
Score = 40 (19.1 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 1276 LAKLN-EQLASTKLEPS 1291
L ++N EQL ST L+PS
Sbjct: 721 LGEMNPEQLWSTTLDPS 737
Score = 40 (19.1 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 1161 LRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDA-GPK 1209
L + PE LW LD + + ++ +A ++ + GDA GP+
Sbjct: 721 LGEMNPEQLWSTTLDPSNRTIFKVTIEEAAVADQMCSML---MGDAVGPR 767
>UNIPROTKB|Q89M38 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055 HSSP:P06982
RefSeq:NP_770995.1 ProteinModelPortal:Q89M38 GeneID:1052126
KEGG:bja:bll4355 PATRIC:21192268
BioCyc:BJAP224911:GJEJ-4381-MONOMER Uniprot:Q89M38
Length = 681
Score = 158 (60.7 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 62/252 (24%), Positives = 103/252 (40%)
Query: 289 WEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXX 348
W + T F S+ N + T GGTH + +
Sbjct: 298 WAVAWTADADGFLS-SYTNTVPTPDGGTHESGLRSALLRGLKDHAERVGQGKRASSITSE 356
Query: 349 XXLW---VFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLS 405
+ V ++ + P F QTK+ L ++ + + + F ++ LL
Sbjct: 357 DVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAMKDPFDHWLSGNPNQANKLLD 416
Query: 406 WANFKQSKDLK----KNDGTKT--EDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKAL 459
+ + + L+ K KT + +R KL D + AG SE L + EGDSA
Sbjct: 417 FVIDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDAGTEGSE---LFIVEGDSA--- 470
Query: 460 AMAGLSVVGRDRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVK 517
G + RDR V PLRGK+LNV A +++ N+++ ++ + +G +Y +
Sbjct: 471 --GGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQAIGCGTLAQYRE-E 527
Query: 518 SLRYGHLMIMTD 529
LRY ++IMTD
Sbjct: 528 DLRYQRIIIMTD 539
Score = 122 (48.0 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 37/145 (25%), Positives = 68/145 (46%)
Query: 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD-LISVHNSGDGVPVEIHQE-EGVYVP 136
L+ +F E++ N+ D A + ++ D ++V ++G G+P++ H +
Sbjct: 68 LHHLFAEVIDNSMDEALAG---HATFIGVELSADGFLTVTDNGRGIPIDPHPKFPKKSAL 124
Query: 137 ELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNM 196
E+I L + +D V +T+GG +G G + N S+ +E A ++L Y+ F
Sbjct: 125 EVIMCTLHSGGKFDSKVYETSGGLHGVGISVVNALSSLLEVEVARSQKL--YRMTFERGH 182
Query: 197 GKKSEPNISKCKEGDNWTKVSFKPD 221
K ++ K T+V FKPD
Sbjct: 183 PKGKLEDLGKINNRRG-TRVRFKPD 206
Score = 81 (33.6 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 39/133 (29%), Positives = 56/133 (42%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDY- 613
M D DG+HI LLI F + P L+ L + P+ K T+ + V Y+ D
Sbjct: 537 MTDADVDGAHIASLLITFFYRQMPRLID-EGHLFLAVPPLYKLTHGSKSV---YARDDAH 592
Query: 614 -EAW-KESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHK--KDFVWEDDQD--GEA 667
EA K NA + +KGLG + KE + K + DD+D ++
Sbjct: 593 KEALIKSEFNANAKV-EVNRFKGLGEMMPAQLKETTMDPAKRTMLKVVLLADDRDTTADS 651
Query: 668 IELAFSKKKIEAR 680
+E K EAR
Sbjct: 652 VERLMGTKA-EAR 663
>UNIPROTKB|P05652 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
EMBL:D26185 EMBL:X02369 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 ProtClustDB:PRK05644 PIR:E22930 RefSeq:NP_387887.1
ProteinModelPortal:P05652 SMR:P05652 PRIDE:P05652
EnsemblBacteria:EBBACT00000000768 GeneID:939456 KEGG:bsu:BSU00060
PATRIC:18971459 GenoList:BSU00060 HOGENOM:HOG000075156 OMA:MDRILAN
BioCyc:BSUB:BSU00060-MONOMER BindingDB:P05652 ChEMBL:CHEMBL4324
Uniprot:P05652
Length = 638
Score = 239 (89.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 120/482 (24%), Positives = 215/482 (44%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EI+ N+ D D + + I++++ + V N G G+PV IH++ G E
Sbjct: 37 GLHHLVWEIVDNSIDEALAGYCTD-INIQIEKDNSITVVDN-GRGIPVGIHEKMGRPAVE 94
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGK-RLKKYKQ-VFTN 194
+I L +D + K +GG +G GA + N STE + DGK + YK+ V
Sbjct: 95 VIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVT 154
Query: 195 NMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDV--VALMKKRV-VDLAGCL-G 250
++ E + + F + +++ L + V +A + K V + + G
Sbjct: 155 DLEIIGETDHTGTTTHFVPDPEIFS-ETTEYDYDLLANRVRELAFLTKGVNITIEDKREG 213
Query: 251 KSVKVELNGHRVPVKSFAEYVD-----MYPKSVTRFHERVNERWEICVTLSEGQFQQV-S 304
+ K E + + +KS+ EY++ ++ + + E+ E+ + ++ + S
Sbjct: 214 QERKNEYH-YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYS 272
Query: 305 FVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALID---- 360
F N I T +GGTH + + A+I
Sbjct: 273 FTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHP 332
Query: 361 NPAFDSQTK------ETLTLRQSSFGSKCEL----SEEFLKKVTAKSGIVETLLSWANFK 410
+P F+ QTK E T+ + F + E + + KK+ K G++ A K
Sbjct: 333 DPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDK-GLMAARARMAA-K 390
Query: 411 QSKDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGR 469
++++L ++ + ++ G KL D + SE L + EGDSA G + GR
Sbjct: 391 KARELTRRKSALEISNLPG--KLADCSSKDPSISE---LYIVEGDSA-----GGSAKQGR 440
Query: 470 DRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIM 527
DR + PLRGK+LNV +A +++L+N+E+ ++ LG G ++N K+ RY ++IM
Sbjct: 441 DRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKA-RYHKVVIM 499
Query: 528 TD 529
TD
Sbjct: 500 TD 501
Score = 70 (29.7 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 30/133 (22%), Positives = 59/133 (44%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF-YSMPDY 613
M D DG+HI+ LL+ F + + +++ ++ P+ K + GK + + Y+ +
Sbjct: 499 MTDADVDGAHIRTLLLTFFYRYMRQIIE-NGYVYIAQPPLYKV--QQGKRVEYAYNDKEL 555
Query: 614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKK-DFVWEDDQDG-EAIELA 671
E ++L ++ YKGLG + + E + + ED D E E+
Sbjct: 556 EELLKTLPQTPKP-GLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEML 614
Query: 672 FSKKKIEARKKWL 684
K +E R+ ++
Sbjct: 615 MGDK-VEPRRNFI 626
Score = 45 (20.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 663 QDGEAIELAFSKKKIEARKKWLLQF-EPG 690
Q G+ +E A++ K++E K L Q +PG
Sbjct: 541 QQGKRVEYAYNDKELEELLKTLPQTPKPG 569
>UNIPROTKB|Q9KVX3 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 257 (95.5 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 111/478 (23%), Positives = 198/478 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D D V V I +++ +SV + G G+P E+H EE V E
Sbjct: 35 GLHHMVFEVVDNSIDEALAGYCKDIV-VTIHEDNS-VSVSDDGRGIPTEMHPEEKVSAAE 92
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L +DDN K +GG +G G + N S + ++ G ++ + Q + + +
Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKI--HSQTYHHGVP 150
Query: 198 KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVEL 257
+ + + + T V F P F D++A KR+ +L+ L V ++L
Sbjct: 151 QAPLAVVGETER--TGTTVRFWPSAQTFTNIEFHYDILA---KRLRELS-FLNSGVSIKL 204
Query: 258 NGHRVPVKS--------FAEYVDMYPKSVTRFHERV----NERW-----EICVTLSEGQF 300
R K +V ++ T HE+V ER E+ + ++G F
Sbjct: 205 TDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDG-F 263
Query: 301 QQ--VSFVNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVF 354
Q+ F N I GGTH+ + L
Sbjct: 264 QENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAV 323
Query: 355 VNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKD 414
V+ + +P F SQTK+ L + + ++E+ + + + S +
Sbjct: 324 VSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCS--KIIDAAR 381
Query: 415 LKKNDGTKTEDVRGISKLEDANLAGG-RNSEQCTLILTEGDSAKALAMAGLSVVGRDRFG 473
++ E R L+ A L G + ++ L+E + + G + GR+R
Sbjct: 382 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 441
Query: 474 --VFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+ PL+GK+LNV +A +++L++ E+ + LG G + N LRY +++IMTD
Sbjct: 442 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 499
Score = 62 (26.9 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGSHI+ LL+ F + P L++ ++ P+ K K GK + + D E
Sbjct: 497 MTDADVDGSHIRTLLLTFFYRQMPELIE-RGYIYIAQPPLYKV--KKGKQEQY--IKDEE 551
Query: 615 AWKE 618
A +
Sbjct: 552 AMNQ 555
Score = 37 (18.1 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 1135 AIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE 1194
A+ L E +GL R K L + P+ LW +D ++ ++ DA +E
Sbjct: 723 ALDWLIKESRRGLSIQRYK------GLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADE 776
>TIGR_CMR|VC_0015 [details] [associations]
symbol:VC_0015 "DNA gyrase, subunit B" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880
OMA:IFETTEF ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 257 (95.5 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 111/478 (23%), Positives = 198/478 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D D V V I +++ +SV + G G+P E+H EE V E
Sbjct: 35 GLHHMVFEVVDNSIDEALAGYCKDIV-VTIHEDNS-VSVSDDGRGIPTEMHPEEKVSAAE 92
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L +DDN K +GG +G G + N S + ++ G ++ + Q + + +
Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKI--HSQTYHHGVP 150
Query: 198 KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVEL 257
+ + + + T V F P F D++A KR+ +L+ L V ++L
Sbjct: 151 QAPLAVVGETER--TGTTVRFWPSAQTFTNIEFHYDILA---KRLRELS-FLNSGVSIKL 204
Query: 258 NGHRVPVKS--------FAEYVDMYPKSVTRFHERV----NERW-----EICVTLSEGQF 300
R K +V ++ T HE+V ER E+ + ++G F
Sbjct: 205 TDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDG-F 263
Query: 301 QQ--VSFVNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVF 354
Q+ F N I GGTH+ + L
Sbjct: 264 QENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAV 323
Query: 355 VNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKD 414
V+ + +P F SQTK+ L + + ++E+ + + + S +
Sbjct: 324 VSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCS--KIIDAAR 381
Query: 415 LKKNDGTKTEDVRGISKLEDANLAGG-RNSEQCTLILTEGDSAKALAMAGLSVVGRDRFG 473
++ E R L+ A L G + ++ L+E + + G + GR+R
Sbjct: 382 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 441
Query: 474 --VFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+ PL+GK+LNV +A +++L++ E+ + LG G + N LRY +++IMTD
Sbjct: 442 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 499
Score = 62 (26.9 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGSHI+ LL+ F + P L++ ++ P+ K K GK + + D E
Sbjct: 497 MTDADVDGSHIRTLLLTFFYRQMPELIE-RGYIYIAQPPLYKV--KKGKQEQY--IKDEE 551
Query: 615 AWKE 618
A +
Sbjct: 552 AMNQ 555
Score = 37 (18.1 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 1135 AIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE 1194
A+ L E +GL R K L + P+ LW +D ++ ++ DA +E
Sbjct: 723 ALDWLIKESRRGLSIQRYK------GLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADE 776
>TIGR_CMR|CJE_0003 [details] [associations]
symbol:CJE_0003 "DNA gyrase, B subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_178032.1 ProteinModelPortal:Q5HXF3 STRING:Q5HXF3
GeneID:3230659 KEGG:cjr:CJE0003 PATRIC:20041695
BioCyc:CJEJ195099:GJC0-3-MONOMER Uniprot:Q5HXF3
Length = 769
Score = 260 (96.6 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 118/480 (24%), Positives = 212/480 (44%)
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYV 135
+ GL+ + E++ N+ D D + V I E I V ++G G+PV++H E +
Sbjct: 32 IGGLHHMIYEVVDNSIDEAMAG-HCDTIDVEITTEGSCI-VSDNGRGIPVDMHPTENMPT 89
Query: 136 PELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNN 195
++ L +D + K +GG +G G + N S + ++ T + + + Y+Q F+
Sbjct: 90 LTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKK-LVATVE-RNGEIYRQEFSEG 147
Query: 196 MGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV 255
I K K+ T + F PD F +T + +++A KR +LA L + +
Sbjct: 148 KVISEFGVIGKSKK--TGTTIEFWPDDQIFEVTEFDYEILA---KRFRELA-YLNPKITI 201
Query: 256 ELNGHRVPV-KSF------AEYV-DMYPK-SVTR-FHERVNER---WEICVTLSEGQFQQ 302
+RV +SF +++V D+ K ++T+ V+E E+ + ++ +
Sbjct: 202 NFKDNRVGKHESFHFEGGISQFVIDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSEN 261
Query: 303 V-SFVNGIATIKGGTH-VDY---VANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNA 357
+ SFVN I T GGTH + + L V+
Sbjct: 262 LLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSV 321
Query: 358 LIDNPAFDSQTKETL-TLRQSSFGSKCE---LSEEFLKKVTAKSGIVETLLSWANFKQSK 413
+ P F+ QTK L + SK L++ F + I+ +L A +++
Sbjct: 322 KVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKVLMAARGREAA 381
Query: 414 DLKKNDGTKTEDVRGISKLEDANLAG--GRNSEQCTLILTEGDSAKALAMAGLSVVGRDR 471
K + T+ ++ + L LA ++ + + L EGDSA G + GR+R
Sbjct: 382 K-KARELTRKKESLSVGTLP-GKLADCQSKDPSESEIYLVEGDSA-----GGSAKQGRER 434
Query: 472 -F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
F + PLRGK+LNV +A +++L + +I N+ G G +++ + LRY ++IMTD
Sbjct: 435 SFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFD-LSKLRYHKIIIMTD 493
Score = 53 (23.7 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLL 581
M D DGSHI+ LL+ F F L+
Sbjct: 491 MTDADVDGSHIQTLLLTFFFRFMNELV 517
Score = 40 (19.1 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 1161 LRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKI 1198
L + PE LW +D +L ++ DA++ + +
Sbjct: 707 LGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNL 744
>TIGR_CMR|SO_0011 [details] [associations]
symbol:SO_0011 "DNA gyrase, B subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_715653.1
ProteinModelPortal:Q8EKS9 SMR:Q8EKS9 GeneID:1167909
KEGG:son:SO_0011 PATRIC:23519713 Uniprot:Q8EKS9
Length = 805
Score = 249 (92.7 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 111/477 (23%), Positives = 203/477 (42%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D D + + I + +SV + G G+PV IH+EEGV E
Sbjct: 36 GLHHMVFEVVDNSIDEALAGHCTD-ITITIHVDGS-VSVKDDGRGIPVSIHEEEGVSAAE 93
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKKYKQVFTNNM 196
+I L +DDN K +GG +G G + N S + + DGK ++Q +T+ +
Sbjct: 94 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGK---VHEQFYTHGV 150
Query: 197 GKKSEPNISKC-KEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLG----- 250
I K G T++ F P F+ +++A + + L +G
Sbjct: 151 PDAPIKEIGDATKTG---TEIRFWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVD 207
Query: 251 -KSVKVELNGHRVPVKSFAEYVDMYPKSVTR--FH---ERVNE-RWEICVTLSEGQFQQV 303
+ K E + + +F +Y++ V + FH ER + E+ + ++G + +
Sbjct: 208 ERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENI 267
Query: 304 -SFVNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNAL 358
F N I GGTH+ + L ++
Sbjct: 268 FCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVK 327
Query: 359 IDNPAFDSQTKETLTLRQSSFGSKCELSE---EFLKKVTAKSGIVETLLSWANFKQSKDL 415
+ +P F SQTK+ L + + + E ++L + A + ++ + A +
Sbjct: 328 VPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAAR 387
Query: 416 KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFG-- 473
K + T+ + + L LA + + L+E + + G + GR+R
Sbjct: 388 KAREMTRRKGALDLGGLP-GKLADCQEKDPG---LSEIYIVEGDSAGGSAKQGRNRKNQA 443
Query: 474 VFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGV-EYNNVKSLRYGHLMIMTD 529
+ PL+GK+LNV +A +++L++ E+ + LG G EYN K+ RY +++IMTD
Sbjct: 444 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKT-RYHNIIIMTD 499
Score = 57 (25.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGK 603
M D DGSHI+ LL+ F P L++ ++ P+ K K GK
Sbjct: 497 MTDADVDGSHIRTLLLTFFFRQMPELIE-RGYVYIAQPPLFKV--KKGK 542
>TIGR_CMR|BA_0005 [details] [associations]
symbol:BA_0005 "DNA gyrase, B subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF EMBL:AF090333
RefSeq:NP_842577.1 RefSeq:YP_016608.1 RefSeq:YP_026296.1
ProteinModelPortal:Q9X3Y6 PRIDE:Q9X3Y6 DNASU:1083919
EnsemblBacteria:EBBACT00000010328 EnsemblBacteria:EBBACT00000015641
EnsemblBacteria:EBBACT00000021045 GeneID:1083919 GeneID:2816408
GeneID:2848886 KEGG:ban:BA_0005 KEGG:bar:GBAA_0005 KEGG:bat:BAS0005
ProtClustDB:PRK05644 BioCyc:BANT260799:GJAJ-5-MONOMER
BioCyc:BANT261594:GJ7F-5-MONOMER Uniprot:Q9X3Y6
Length = 640
Score = 236 (88.1 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 115/477 (24%), Positives = 198/477 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EI+ N+ D D + V I++++ I V ++G G+PV I ++ G E
Sbjct: 40 GLHHLVWEIVDNSIDEALAG-YCDEINVSIEEDNS-IRVTDNGRGIPVGIQEKMGRPAVE 97
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L + K +GG +G GA + N STE +E + K + Q + +
Sbjct: 98 VIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTE--LEVFVHREGKIHYQKYERGIP 155
Query: 198 KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHL-EDDVVALMKKRVVDLAGCLGKSVKVE 256
I + T+ FKPD F T + E D +A R+ +LA L +++K+
Sbjct: 156 VADLKVIGDTDQTGTITR--FKPDPEIFQETTVYEFDTLAT---RMRELA-FLNRNIKLT 209
Query: 257 LNGHRV--PVKSF------AEYVDMYPKSVTRFHE--------RVNERWEICVTLSEGQF 300
+ R K F YV+ +S HE + + E+ + +EG
Sbjct: 210 IEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYT 269
Query: 301 QQV-SFVNGIATIKGGTH-VDY---VANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFV 355
+ SF N I T +GGTH V + + L V
Sbjct: 270 NNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIV 329
Query: 356 NALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDL 415
+ NP F+ QTK L ++ ++ SE F K + + ++ +
Sbjct: 330 SIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARV 389
Query: 416 KKNDGTKTEDVRGISKLEDANLAGG-RNSEQCTLILTEGDSAKALAMAGLSVVGRDRF-- 472
E R S LE ++L G + ++E + + G + GRDR
Sbjct: 390 AAKKAR--ELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQ 447
Query: 473 GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+ PL+GK++NV +A +++L+N E+ I +G G +++ ++ RY ++IMTD
Sbjct: 448 AILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFD-IEKARYHKVIIMTD 503
Score = 69 (29.3 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF-YSMPDY 613
M D DG+HI+ LL+ F + + +++ ++ P+ K + GK + + Y+ +
Sbjct: 501 MTDADVDGAHIRTLLLTFFYRYMRQIIE-HGYIYIAQPPLFKV--QQGKKIQYAYNEKEL 557
Query: 614 EAWKESLGGNASSWSIKYYKGLG 636
E L I+ YKGLG
Sbjct: 558 EKILAELPAQPKP-GIQRYKGLG 579
Score = 41 (19.5 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 24 NKTIEEMYQKKSQLEHILLRPDTYIGS 50
N E Q LE + RP YIGS
Sbjct: 9 NSYDESQIQVLEGLEAVRKRPGMYIGS 35
Score = 41 (19.5 bits), Expect = 4.2e-14, Sum P(4) = 4.2e-14
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 1141 LEKVQGLLADRDKLN-EEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKI 1198
LEK+ L + K + L + P LW +D L ++ DA +E +I
Sbjct: 557 LEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEI 615
Score = 38 (18.4 bits), Expect = 4.2e-14, Sum P(4) = 4.2e-14
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 663 QDGEAIELAFSKKKIE 678
Q G+ I+ A+++K++E
Sbjct: 543 QQGKKIQYAYNEKELE 558
>UNIPROTKB|Q9RVW5 [details] [associations]
symbol:DR_0906 "DNA gyrase, subunit B" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000513
GenomeReviews:AE000513_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982 PIR:A75461
RefSeq:NP_294630.1 ProteinModelPortal:Q9RVW5 SMR:Q9RVW5
GeneID:1799432 KEGG:dra:DR_0906 PATRIC:21629376
BioCyc:DRAD243230:GH46-1277-MONOMER Uniprot:Q9RVW5
Length = 663
Score = 157 (60.3 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 55/193 (28%), Positives = 99/193 (51%)
Query: 351 LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK 410
++ V+ + +P F+SQ K L ++ + E+F + + I +T++ K
Sbjct: 338 IYCVVSVKVGDPQFESQAKVKLLNSEAQTAVNAIVGEKFAQFLEENPKIGKTIVE----K 393
Query: 411 QSKDLKKNDGT-KTED-VRGISKLEDANLAG------GRNSEQCTLILTEGDSAKALAMA 462
++ + D K D VR + LE+ +L G ++ + L + EG+SA
Sbjct: 394 AAEAARARDAARKARDIVRRSNPLENDDLPGKLADCSSQDPAESELFIVEGNSA-----G 448
Query: 463 GLSVVGRDR-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLK---QGVEYN-NV 516
G + GR+R F + PLRGK+LNV +A N++L N+EI ++ +G +G E ++
Sbjct: 449 GSAKGGRERRFQAILPLRGKILNVEKAELNKILKNAEIRSLIGAIGAGFDGKGEEMRFDL 508
Query: 517 KSLRYGHLMIMTD 529
++LRY ++IMTD
Sbjct: 509 ENLRYHKIVIMTD 521
Score = 131 (51.2 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 47/200 (23%), Positives = 88/200 (44%)
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYV 135
+ G +++ EI+ N D + +++V+ + +V + G G+PV+I + +G
Sbjct: 41 IDGYHQLLTEIIDNGIDEGLAGFAGE-IQIVLHADGSA-TVTDDGRGIPVDIMKSKGRPA 98
Query: 136 PELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNN 195
E+IF L + K +GG +G G+ + N ST + K+L + F
Sbjct: 99 IEVIFSELHAGGKFGQGAYKVSGGLHGVGSTVVNALSTYLDVTVNKHKQLHHIR--FERG 156
Query: 196 MGKKSEPNISKCKEGDNW-TKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSV- 253
+ + + + W TKVSF PD F + D + + + R+ +LA G +
Sbjct: 157 VLVQPLEVLGATPKDVKWSTKVSFHPDPTIFKEFDNQFDYLRI-RNRLRELAYLTGLKIV 215
Query: 254 ----KVELNGHRVPVKSFAE 269
+ EL+G + + F E
Sbjct: 216 IRDERTELHGGEIKEEVFHE 235
Score = 63 (27.2 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 22/92 (23%), Positives = 38/92 (41%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKAT----NKNGKVLSFYSM 610
M D DG HI LL+ F F +++ L P+ K T KN K + ++
Sbjct: 519 MTDADMDGGHITTLLLTFFFRFMRPIVE-QGHLYIAQPPLYKITVGAQTKNNKGVYLFTN 577
Query: 611 PDYEAWKESLGGNASSWSIKYYKGLGTSTSKE 642
+ + + I+ +KGLG +++
Sbjct: 578 EELKEHVADAVKAGKKYEIQRFKGLGEMNAEQ 609
Score = 48 (22.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 1136 IGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEER 1195
IG +EK RD + D +R++ P + D L +L + D AE E
Sbjct: 386 IGKTIVEKAAEAARARDAARKARDIVRRSNP-----LENDDLPGKLADCSSQDP-AESEL 439
Query: 1196 MKIKGNGNG 1204
++GN G
Sbjct: 440 FIVEGNSAG 448
>UNIPROTKB|Q74H89 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_951065.1
ProteinModelPortal:Q74H89 SMR:Q74H89 GeneID:2686080
KEGG:gsu:GSU0003 PATRIC:22022743 BioCyc:GSUL243231:GH27-3-MONOMER
Uniprot:Q74H89
Length = 795
Score = 269 (99.8 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 125/483 (25%), Positives = 201/483 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EI+ N+ D + V V I + L V N G G+P +IH EG E
Sbjct: 38 GLHHLVYEIVDNSIDEALAG-YCNEVNVTIHLDGSLTVVDN-GRGIPTDIHPTEGKPAAE 95
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKK-YK----QV 191
+ L +D+ K +GG +G G + N S + +E DGK ++ Y Q
Sbjct: 96 VALTVLHAGGKFDNTSYKVSGGLHGVGVSVVNALSRKLELEIRRDGKVYRQSYACGDPQT 155
Query: 192 FTNNMG--KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCL 249
MG KK I+ + + F D+ + L + A ++ + D
Sbjct: 156 PLEVMGETKKRGTKITFLPDDTIFETTEFSFDVLSQRLRELAF-LNAGVRITITDERE-E 213
Query: 250 GKSVKVELNGHRVPVKSFAEYVD-----MYPKSVTRFHERVNERWEICVTLSEGQFQQV- 303
GK G V SF EY++ ++PK + E+ E+ + ++ ++V
Sbjct: 214 GKHHDFHYEGGIV---SFVEYLNRNRTALHPKPIYFKGEKAGVEMEVALQYNDSYDEKVF 270
Query: 304 SFVNGIATIKGGTH-VDYVA---NQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALI 359
SF N I T +GGTH V + A L ++ I
Sbjct: 271 SFANNINTHEGGTHLVGFRAALTRTMNTYAAANELLKKEKVAISGEDLREGLTAVISVKI 330
Query: 360 DNPAFDSQTKETL----------TLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANF 409
P F+ QTK L +L E + + K + KS +E +
Sbjct: 331 PQPQFEGQTKTKLGNSEVKGYVESLMNEKLAVFLEENPKIAKDIIGKS--IEAARAREAA 388
Query: 410 KQSKDLKKNDGTKTEDVRGI-SKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVG 468
+++++L + G D+ + KL D R+ C L L EGDSA G + G
Sbjct: 389 RKARELTRRKGAL--DISNLPGKLADCQ---ERDPALCELYLVEGDSA-----GGSAKQG 438
Query: 469 RDR-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMI 526
RDR F + PL+GK+LNV +A +++L++ EIG + LG G + ++ LRY +++
Sbjct: 439 RDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRYHRIIV 498
Query: 527 MTD 529
MTD
Sbjct: 499 MTD 501
Score = 48 (22.0 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLK 582
M D DGSHI LL+ F P +++
Sbjct: 499 MTDADVDGSHILTLLLTFFFRQMPEVVE 526
Score = 37 (18.1 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 37 LEHILLRPDTYIGSIEKHTQALWIYE 62
LE + RP YIGS +YE
Sbjct: 20 LEAVRKRPAMYIGSTAAQGLHHLVYE 45
Score = 37 (18.1 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1161 LRKATPESLWVKDLDALDMQLDELDKSDA 1189
L + PE LW ++ ++ L ++ DA
Sbjct: 733 LGEMNPEQLWETTMEPVNRTLLQVKIEDA 761
>TIGR_CMR|GSU_0003 [details] [associations]
symbol:GSU_0003 "DNA gyrase, B subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_951065.1 ProteinModelPortal:Q74H89 SMR:Q74H89
GeneID:2686080 KEGG:gsu:GSU0003 PATRIC:22022743
BioCyc:GSUL243231:GH27-3-MONOMER Uniprot:Q74H89
Length = 795
Score = 269 (99.8 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 125/483 (25%), Positives = 201/483 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EI+ N+ D + V V I + L V N G G+P +IH EG E
Sbjct: 38 GLHHLVYEIVDNSIDEALAG-YCNEVNVTIHLDGSLTVVDN-GRGIPTDIHPTEGKPAAE 95
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKK-YK----QV 191
+ L +D+ K +GG +G G + N S + +E DGK ++ Y Q
Sbjct: 96 VALTVLHAGGKFDNTSYKVSGGLHGVGVSVVNALSRKLELEIRRDGKVYRQSYACGDPQT 155
Query: 192 FTNNMG--KKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCL 249
MG KK I+ + + F D+ + L + A ++ + D
Sbjct: 156 PLEVMGETKKRGTKITFLPDDTIFETTEFSFDVLSQRLRELAF-LNAGVRITITDERE-E 213
Query: 250 GKSVKVELNGHRVPVKSFAEYVD-----MYPKSVTRFHERVNERWEICVTLSEGQFQQV- 303
GK G V SF EY++ ++PK + E+ E+ + ++ ++V
Sbjct: 214 GKHHDFHYEGGIV---SFVEYLNRNRTALHPKPIYFKGEKAGVEMEVALQYNDSYDEKVF 270
Query: 304 SFVNGIATIKGGTH-VDYVA---NQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALI 359
SF N I T +GGTH V + A L ++ I
Sbjct: 271 SFANNINTHEGGTHLVGFRAALTRTMNTYAAANELLKKEKVAISGEDLREGLTAVISVKI 330
Query: 360 DNPAFDSQTKETL----------TLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANF 409
P F+ QTK L +L E + + K + KS +E +
Sbjct: 331 PQPQFEGQTKTKLGNSEVKGYVESLMNEKLAVFLEENPKIAKDIIGKS--IEAARAREAA 388
Query: 410 KQSKDLKKNDGTKTEDVRGI-SKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVG 468
+++++L + G D+ + KL D R+ C L L EGDSA G + G
Sbjct: 389 RKARELTRRKGAL--DISNLPGKLADCQ---ERDPALCELYLVEGDSA-----GGSAKQG 438
Query: 469 RDR-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMI 526
RDR F + PL+GK+LNV +A +++L++ EIG + LG G + ++ LRY +++
Sbjct: 439 RDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRYHRIIV 498
Query: 527 MTD 529
MTD
Sbjct: 499 MTD 501
Score = 48 (22.0 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLK 582
M D DGSHI LL+ F P +++
Sbjct: 499 MTDADVDGSHILTLLLTFFFRQMPEVVE 526
Score = 37 (18.1 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 37 LEHILLRPDTYIGSIEKHTQALWIYE 62
LE + RP YIGS +YE
Sbjct: 20 LEAVRKRPAMYIGSTAAQGLHHLVYE 45
Score = 37 (18.1 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1161 LRKATPESLWVKDLDALDMQLDELDKSDA 1189
L + PE LW ++ ++ L ++ DA
Sbjct: 733 LGEMNPEQLWETTMEPVNRTLLQVKIEDA 761
>UNIPROTKB|Q8TQG0 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:188937
"Methanosarcina acetivorans C2A" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:NP_616517.1 HSSP:P06982 ProteinModelPortal:Q8TQG0
GeneID:1473472 KEGG:mac:MA1584 BioCyc:MACE188937:GI2O-1646-MONOMER
Uniprot:Q8TQG0
Length = 634
Score = 232 (86.7 bits), Expect = 9.0e-17, Sum P(3) = 9.0e-17
Identities = 117/481 (24%), Positives = 199/481 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D V V I+ + ++V ++G G+P++ H E
Sbjct: 36 GLHHLVYEVVDNSIDEALAG-FCTRVDVTINPDGS-VTVLDNGRGIPIDPHPVHKKSALE 93
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKKYKQVFTNNM 196
++ L +D N K +GG +G G + N S +E DGK KY Q +
Sbjct: 94 VVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVNALSEWLNVEVERDGK---KYFQRYIRG- 149
Query: 197 GKKSEPNISKCKEGD-NWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV 255
K E + + + TK +FKPD F T + D+++ R+ +LA L + + +
Sbjct: 150 --KPEAEVQETGTSEITGTKTTFKPDARIFETTDFQYDILS---NRLRELA-FLNRGLTI 203
Query: 256 ELNGHRVP---VKSF------AEYVDMYPKSVTRFHER--VNERW------EICVTLSEG 298
L R P ++F E+V+ K HE+ ER EI + +
Sbjct: 204 NLKDLRSPEGQAETFIYSGGIVEFVEYLNKKKQPLHEKPIYFERQRDDMVVEIAMQYTNS 263
Query: 299 QFQQV-SFVNGIATIKGGTHV---DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVF 354
+ V SF N I T +GGTH+ + L
Sbjct: 264 YTENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKANKLSKEDAKLTGDDVREGLTAI 323
Query: 355 VNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSG-IVETLLSWANFKQSK 413
++ + P F+ QTK L + G L + L + ++ + +L A Q
Sbjct: 324 ISVKLMEPQFEGQTKTRLGNSEVK-GIVDSLVTDGLAEYFEENPKVANVILEKALLAQ-- 380
Query: 414 DLKKNDGTKT--EDVRGISKLEDANLAGG-RNSEQCTLILTEGDSAKALAMAGLSVVGRD 470
K + K E R S LE + L G + + + E + + G + GRD
Sbjct: 381 --KAREAAKKARELTRRKSALEVSTLPGKLADCSEKDPSVCEIYIVEGNSAGGSAKQGRD 438
Query: 471 R-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMT 528
R F + PLRGK+LNV ++ ++L N+E+ ++ LG ++ ++S RY +++MT
Sbjct: 439 RGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITALGTGVSEDFA-LESARYHKVILMT 497
Query: 529 D 529
D
Sbjct: 498 D 498
Score = 66 (28.3 bits), Expect = 9.0e-17, Sum P(3) = 9.0e-17
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DG+HI+ LL+ + L I + V P + K +S + E
Sbjct: 496 MTDADVDGAHIRTLLLTLFFRYMRPL--IDAGYVYIAQPPLYRIKKGKSEYYIHSDRELE 553
Query: 615 AWKESLGGNASSWSIKYYKGLG 636
K+ LG +I+ YKGLG
Sbjct: 554 VKKKELG--EKGLAIQRYKGLG 573
Score = 43 (20.2 bits), Expect = 9.0e-17, Sum P(3) = 9.0e-17
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 37 LEHILLRPDTYIGSIEKHTQALWIYE 62
LE + RP YIGS + +YE
Sbjct: 18 LEAVRKRPSMYIGSTDSRGLHHLVYE 43
Score = 40 (19.1 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 1141 LEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDA-RAEE 1193
LE + L ++ + L + PE LW ++ L ++ DA RA+E
Sbjct: 552 LEVKKKELGEKGLAIQRYKGLGEMNPEQLWETTMNPESRTLLQVTLEDALRADE 605
>TIGR_CMR|ECH_0620 [details] [associations]
symbol:ECH_0620 "DNA gyrase, B subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_507430.1 ProteinModelPortal:Q2GGK3
STRING:Q2GGK3 GeneID:3927738 KEGG:ech:ECH_0620 PATRIC:20576692
BioCyc:ECHA205920:GJNR-622-MONOMER Uniprot:Q2GGK3
Length = 798
Score = 146 (56.5 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 52/182 (28%), Positives = 92/182 (50%)
Query: 359 IDNPAFDSQTKETLTLRQSSFGSKC----ELSEEFLKKVTAKSGIVETLLSWANFKQS-- 412
+ +P F SQTK+ L ++ + +L+ F + I+E ++ A +++
Sbjct: 339 LPDPKFSSQTKDKLVSSEARTAVENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAAR 398
Query: 413 --KDL-KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGR 469
+DL K +G + G KL D ++ E L + EG+SA G + GR
Sbjct: 399 RARDLIKSKNGFDFTILPG--KLADCQ---EKSPELSELFIVEGNSA-----GGSAKQGR 448
Query: 470 DRFG--VFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIM 527
DR V L+GK+LNV AS +++L+++EI ++ +G G E +++ +RY ++IM
Sbjct: 449 DRRSQAVLSLKGKILNVERASLDRILSSAEIASLITAIGSNIGTENFDIEKVRYHKVIIM 508
Query: 528 TD 529
TD
Sbjct: 509 TD 510
Score = 145 (56.1 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 47/186 (25%), Positives = 91/186 (48%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D + + +VI Q +SV ++G G+PV++H++EG+ E
Sbjct: 34 GLHHMVYEVIDNSIDEALAG-FCNKIDIVI-QSDGSVSVVDNGRGIPVDMHEDEGMSAAE 91
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L +D N K +GG +G G + N S+ +E + K+Y F + +
Sbjct: 92 VIMTQLHAGGKFDHNSYKVSGGLHGVGISVVNALSSW--LELTIWRNGKEYFMRFEDGIT 149
Query: 198 KKSEPNISK--CKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV 255
KS + + K+G TK++F P F+ + + ++ R+ +L+ L ++ +
Sbjct: 150 VKSLSVVGENTTKKG---TKITFLPSKNIFSSINFS---YSTLENRIRELS-FLNSNINM 202
Query: 256 ELNGHR 261
L R
Sbjct: 203 NLKDLR 208
Score = 58 (25.5 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPD 612
M D DGSHI+ LL+ F + +++ +L P+ K T K+ K FY D
Sbjct: 508 MTDADVDGSHIRTLLLTFFFRYMREVIE-KGYLYIAQPPLYKVT-KHKK--EFYIKND 561
Score = 46 (21.3 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 640 SKEGKEYF--QNITLHKKDFVWEDDQDGEAIE---LAF----SKKKIEARKKWLLQ---F 687
S G E F + + HK + + D DG I L F ++ IE ++ Q +
Sbjct: 488 SNIGTENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIEKGYLYIAQPPLY 547
Query: 688 EPGNHLDQKEKYIKYSDFVNKELILFSMADL 718
+ H +KE YIK D ++ +I ++ DL
Sbjct: 548 KVTKH--KKEFYIKNDDMLHDYIINNAVKDL 576
Score = 43 (20.2 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 266 SFAEYVDMYPKSVTRF-H-ERVNERWEICVTLS----EGQFQQV-SFVNGIATIKGGTHV 318
+F +Y+D +VT+ H E + I + LS + ++ + F N I GGTH+
Sbjct: 235 AFVKYLDRNKTAVTKVVHIEGIVLEHGISLELSMHWNDSYYENMLCFTNNIRQKDGGTHL 294
>UNIPROTKB|O69998 [details] [associations]
symbol:O69998 "Putative DNA gyrase subunit B"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075154 ProtClustDB:PRK05559
HSSP:P06982 EMBL:AL939125 PIR:T35196 RefSeq:NP_629945.1
ProteinModelPortal:O69998 GeneID:1101264 KEGG:sco:SCO5822
PATRIC:23741544 OMA:DSEMIIS Uniprot:O69998
Length = 707
Score = 170 (64.9 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 73/243 (30%), Positives = 107/243 (44%)
Query: 304 SFVNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALI 359
SFVN IAT KGGTHV VA L V +
Sbjct: 326 SFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDIVKDDALEGLTAVVTVRL 385
Query: 360 DNPAFDSQTKETLTLRQSSFGSKCELSEE---FL---KKVTAKSG--IVETLLSWANFK- 410
P F+ QTKE L + +S E FL K+ A+ ++E ++ A +
Sbjct: 386 AEPQFEGQTKEVLGTSAARRIVNNVISRELKAFLTSTKRDAAQQARVVMEKAVAAARTRI 445
Query: 411 ---QSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVV 467
Q KD ++ T E +KL D SE L + EGDSA L A L+
Sbjct: 446 AARQHKDAQRRK-TALESSSLPAKLADCRSDDVDRSE---LFIVEGDSA--LGTAKLA-- 497
Query: 468 GRDRF-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMI 526
F + P+RGK+LNV+++S +L N+E G I +++G G ++ + + RYG +++
Sbjct: 498 RNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRTFD-IDAARYGKIIM 556
Query: 527 MTD 529
MTD
Sbjct: 557 MTD 559
Score = 99 (39.9 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 25/101 (24%), Positives = 47/101 (46%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL EI+ N+ D + D ++V++ + + V ++G G+PV++ + G+ E
Sbjct: 52 GLMHCLWEIIDNSVD-EALGGYCDHIEVILHDDAS-VEVRDNGRGIPVDVEPKTGLSGVE 109
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIE 178
++ L + +GG +G GA + N S IE
Sbjct: 110 VVMTKLHAGGKFGGGAYAASGGLHGVGASVVNALSARLDIE 150
Score = 60 (26.2 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 23/89 (25%), Positives = 39/89 (43%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVK---ATNKNGKVLSFYSMP 611
M D DGSHI+ LL+ H + +++ + P+ + K G+ Y+
Sbjct: 557 MTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAA-VPPLHRIELVQPKKGQDKYVYTYS 615
Query: 612 DYEAWKESLGGNASSW----SIKYYKGLG 636
D E + + + + SI+ YKGLG
Sbjct: 616 DRELRDKLMEFQSKNIRYKDSIQRYKGLG 644
Score = 56 (24.8 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 1140 TLEKVQGL-LADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE 1194
++++ +GL D D+L E D R+ T + + DLD+ + D L +D +E
Sbjct: 636 SIQRYKGLGEMDADQLAETTMDPRRRTLRRINLTDLDSAEQVFDLLMGNDVAPRKE 691
Score = 44 (20.5 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 37 LEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIF-DEILVNAADNKQ 95
LE + RP YIGS + ++E ++ Y + I D+ V DN +
Sbjct: 34 LEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVILHDDASVEVRDNGR 93
Query: 96 R-----DPK--MDAVKVVIDQEH 111
+PK + V+VV+ + H
Sbjct: 94 GIPVDVEPKTGLSGVEVVMTKLH 116
>TIGR_CMR|DET_0004 [details] [associations]
symbol:DET_0004 "DNA gyrase, B subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:YP_180759.1 ProteinModelPortal:Q3ZAJ0 STRING:Q3ZAJ0
GeneID:3229139 KEGG:det:DET0004 PATRIC:21607113
BioCyc:DETH243164:GJNF-4-MONOMER Uniprot:Q3ZAJ0
Length = 642
Score = 227 (85.0 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 117/483 (24%), Positives = 203/483 (42%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EI+ N+ D D +KV+I ++ +SV ++G G+P++IH + E
Sbjct: 45 GLHHLVYEIVYNSVDEAMAGV-CDRIKVIIYKDGS-VSVEDNGRGIPIDIHPVTKISALE 102
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+ L + + + +GG +G GA + N + ++ ++ Y+Q + G
Sbjct: 103 TVMTVLHAGAKFGGKTYQVSGGLHGVGASVVNALAEWTTVKVRRNGKI--YQQSYQR--G 158
Query: 198 KKSEPNISKCKEGD-NWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVE 256
K S P + + D + T FK D F+ T + + + R+ ++A L K ++V
Sbjct: 159 KPSTP-LEEVGVSDGSGTTTIFKADSQIFSTTEYDFETLT---DRLREIA-YLNKGLEVY 213
Query: 257 LNGHRVPVKS---FAEYVDMYPKSVTRFHERVNERWEICVTL-SEGQFQQVS-------- 304
+ + + F + + + + R E V R I +T S+ +V+
Sbjct: 214 IYDEQSDQERTYYFEGGITGFVRHLNRNRE-VRHRQPIYITKKSDSTILEVAIQYNDGYS 272
Query: 305 -----FVNGIATIKGGTHV----DYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFV 355
F N + TI GGTH+ + + V
Sbjct: 273 DSTLTFANCVNTIDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIV 332
Query: 356 NALIDNPAFDSQTKETL-TLRQSSFGSKC---ELSEEFLKKVTAKSGIVETLLSWANFKQ 411
+ + P F+ QTK L + SF +LS + I+E ++ A ++
Sbjct: 333 SVKLPEPQFEGQTKGKLGNIEIKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKARE 392
Query: 412 SKDLKKNDGTKTEDVRGISKLEDANLA--GGRNSEQCTLILTEGDSAKALAMAGLSVVGR 469
+ K D + L LA R++ C L L EGDSA G + GR
Sbjct: 393 AAR-KARDLIIRKSALDTGTLP-GKLADCSERDASLCELFLVEGDSA-----GGSAKQGR 445
Query: 470 DR-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYN-NVKSLRYGHLMI 526
+R F + PLRGK+LNV +AS +++L + EI I I L G++ + + LRY L++
Sbjct: 446 NRRFQAILPLRGKILNVEKASPDKMLAHEEIRAI--ITALAAGIDNDFDPAKLRYNRLVL 503
Query: 527 MTD 529
MTD
Sbjct: 504 MTD 506
Score = 69 (29.3 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 29/90 (32%), Positives = 41/90 (45%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DGSHI+ LL+ F P L+ S L P+ K K+ S +
Sbjct: 504 MTDADVDGSHIRTLLLTFFFRHMPRLIT-ESHLFIAQPPLYKI-----KIGSNEHWVYND 557
Query: 615 AWKESLGGNASS--WSIKYYKGLGTSTSKE 642
A KE+L S I+ YKGLG ++++
Sbjct: 558 AEKETLLSQTKSNKVDIQRYKGLGEMSAEQ 587
Score = 41 (19.5 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 19 GPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYE 62
G A N ++ Q L + RP YIGS ++ +YE
Sbjct: 10 GANAENYNASDI-QVLEGLAAVRKRPGMYIGSTDQRGLHHLVYE 52
Score = 37 (18.1 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 1161 LRKATPESLWVKDLDALDMQLDELDKSDA-RAEEERMKIKGNGNGDAGPK 1209
L + + E LW +D L E+ DA +A++ + G G+ P+
Sbjct: 580 LGEMSAEQLWKTTMDPASRTLLEVKVEDAAKADQIFNLLMG---GEVAPR 626
>UNIPROTKB|P0C5C5 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842572 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27512 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK05644 PIR:S44198 RefSeq:NP_214519.1
RefSeq:NP_334414.1 RefSeq:YP_006513317.1 PDB:2ZJT PDB:3IG0 PDB:3M4I
PDBsum:2ZJT PDBsum:3IG0 PDBsum:3M4I ProteinModelPortal:P0C5C5
SMR:P0C5C5 PRIDE:P0C5C5 EnsemblBacteria:EBMYCT00000001058
EnsemblBacteria:EBMYCT00000070955 GeneID:13315978 GeneID:887081
GeneID:922435 KEGG:mtc:MT0005 KEGG:mtu:Rv0005 KEGG:mtv:RVBD_0005
PATRIC:18121734 TubercuList:Rv0005 HOGENOM:HOG000075154
BindingDB:P0C5C5 ChEMBL:CHEMBL3489 EvolutionaryTrace:P0C5C5
Uniprot:P0C5C5
Length = 675
Score = 156 (60.0 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 69/256 (26%), Positives = 108/256 (42%)
Query: 290 EICVTLSEGQFQQV-SFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXX----XX 344
EI + + G + V +F N I T +GGTH + +
Sbjct: 288 EIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTG 347
Query: 345 XXXXXXLWVFVNALIDNPAFDSQTKETL-TLRQSSFGSK-C--ELSEEFLKKVTAKSGIV 400
L ++ + P F+ QTK L SF K C +L+ F T +V
Sbjct: 348 DDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVV 407
Query: 401 ETLLSWANFK----QSKDLKKNDGTKTEDVRGI-SKLEDANLAGGRNSEQCTLILTEGDS 455
+S A + ++++L + D+ G+ KL D R SE L + EGDS
Sbjct: 408 NKAVSSAQARIAARKARELVRRKSAT--DIGGLPGKLADCRSTDPRKSE---LYVVEGDS 462
Query: 456 AKALAMAGLSVVGRDRF--GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEY 513
A G + GRD + PLRGK++NV +A ++VL N+E+ I LG E+
Sbjct: 463 A-----GGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEF 517
Query: 514 NNVKSLRYGHLMIMTD 529
+ + LRY +++M D
Sbjct: 518 D-IGKLRYHKIVLMAD 532
Score = 132 (51.5 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 58/216 (26%), Positives = 93/216 (43%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ NA D V VV+ ++ + V + G G+PV H G+ +
Sbjct: 41 GLHHLIWEVVDNAVDEAMAG-YATTVNVVLLEDGG-VEVADDGRGIPVATHAS-GIPTVD 97
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKKYKQVFTNNM 196
++ L +D + +GG +G G + N ST +E DG ++ QV+
Sbjct: 98 VVMTQLHAGGKFDSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGY---EWSQVY---- 150
Query: 197 GKKSEPNISKCKEGDNWTK----VSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKS 252
+KSEP K+G K V F D A F T + + VA +R+ ++A L K
Sbjct: 151 -EKSEP--LGLKQGAPTKKTGSTVRFWADPAVFETTEYDFETVA---RRLQEMA-FLNKG 203
Query: 253 VKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNER 288
+ + L RV E VD V + +ER
Sbjct: 204 LTINLTDERVTQD---EVVDEVVSDVAEAPKSASER 236
Score = 55 (24.4 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 26/93 (27%), Positives = 39/93 (41%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPS-FLVEFITPIVKATNKNGKVLSFYSMPDY 613
M D DG HI LL+ + F L++ FL + P+ K + YS +
Sbjct: 530 MADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQ--PPLYKLKWQRSDPEFAYSDRER 587
Query: 614 EAWKES---LGGNASSWS-IKYYKGLGTSTSKE 642
+ E+ G + I+ YKGLG +KE
Sbjct: 588 DGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKE 620
Score = 45 (20.9 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 1146 GLLADRDKLNEE-----VDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKG 1200
GL A + K+N+E L + + LW +D L ++ DA A +E I
Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILM 652
Query: 1201 NGNGDAGPKIVAKRAPKNAR 1220
+ DA + + A K+ R
Sbjct: 653 GEDVDARRSFITRNA-KDVR 671
Score = 37 (18.1 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 37 LEHILLRPDTYIGS 50
LE + RP YIGS
Sbjct: 23 LEAVRKRPGMYIGS 36
>TAIR|locus:2146698 [details] [associations]
symbol:GYRB2 "DNA GYRASE B2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AL391716
GO:GO:0009330 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
EMBL:AY039521 EMBL:AY142041 IPI:IPI00527008 IPI:IPI00537479
RefSeq:NP_568133.1 RefSeq:NP_850762.1 UniGene:At.10083
ProteinModelPortal:Q94BZ7 SMR:Q94BZ7 STRING:Q94BZ7 PaxDb:Q94BZ7
PRIDE:Q94BZ7 EnsemblPlants:AT5G04130.1 GeneID:830291
KEGG:ath:AT5G04130 GeneFarm:4066 TAIR:At5g04130 eggNOG:COG0187
HOGENOM:HOG000075155 InParanoid:Q94BZ7 KO:K02470 OMA:IGKNEYN
PhylomeDB:Q94BZ7 ProtClustDB:CLSN2689450 Genevestigator:Q94BZ7
GermOnline:AT5G04130 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 Uniprot:Q94BZ7
Length = 732
Score = 170 (64.9 bits), Expect = 2.5e-15, Sum P(4) = 2.5e-15
Identities = 73/246 (29%), Positives = 109/246 (44%)
Query: 303 VSFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXX----LWVFVNAL 358
+ + N I TI GGTH++ V L V+
Sbjct: 362 LGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVK 421
Query: 359 IDNPAFDSQTKETL---TLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWA-N-FKQSK 413
+ NP F+ QTK L +R+ S E EFL+ I+E+++S + N +K +
Sbjct: 422 VPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLE---LHPDILESIISKSLNAYKAAL 478
Query: 414 DLKKNDGTKTEDVRGISKLEDANLAG------GRNSEQCTLILTEGDSAKALAMAGLSVV 467
K+ E VR S L+ ++L G + E + + EGDSA G +
Sbjct: 479 AAKR----ARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSA-----GGSAKQ 529
Query: 468 GRDR-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVK--SLRYGH 523
GRDR F + PLRGK+LN+ + N EI N+ ILGL GV+ + K +LRY
Sbjct: 530 GRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNL--ILGLGLGVKGEDFKKENLRYHK 587
Query: 524 LMIMTD 529
++I+TD
Sbjct: 588 IIILTD 593
Score = 87 (35.7 bits), Expect = 2.5e-15, Sum P(4) = 2.5e-15
Identities = 54/202 (26%), Positives = 84/202 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EIL NA D Q V VV+ + +SV ++G G+P ++H E
Sbjct: 120 GLHHLVYEILDNAIDEAQAG-YASKVDVVLHADGS-VSVVDNGRGIPTDLHPATKKSSLE 177
Query: 138 LIFGHLLTSSNYDDNVK--KTTGGRNGYGAKLTNIFSTEFIIET-ADGKRLKK-Y---KQ 190
+ L + +GG +G G + N S + DG K+ Y K
Sbjct: 178 TVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKP 237
Query: 191 VFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLG 250
+ T + + P SK +G T + F PD F T +E D + R+ +LA L
Sbjct: 238 ITT--LTCRVLPLESKGTKG---TSIRFWPDKEVFT-TAIEFDHNTIAG-RIRELA-FLN 289
Query: 251 KSVKVELNGHRV-PVKS-FAEY 270
V + L P K+ ++EY
Sbjct: 290 PKVTISLKKEDDDPEKTQYSEY 311
Score = 82 (33.9 bits), Expect = 2.5e-15, Sum P(4) = 2.5e-15
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF-YSMPDYEAWK 617
D DG+HI+ LL+ F + +L V + P+ K + GK + Y D +
Sbjct: 595 DVDGAHIRTLLLTFFFRYQRALFDAGCIYVG-VPPLFKV--ERGKNAQYCYDDADLKKIT 651
Query: 618 ESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNI-TLHKKDFVWEDDQDGEAIELAFSKKK 676
+ NAS ++I+ +KGLG ++ E N T K V +D + + +
Sbjct: 652 SNFPANAS-YNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGAR 710
Query: 677 IEARKK 682
++ RK+
Sbjct: 711 VDVRKE 716
Score = 38 (18.4 bits), Expect = 2.5e-15, Sum P(4) = 2.5e-15
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 29 EMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYE 62
E Q L+ + RP YIGS +YE
Sbjct: 94 EQIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYE 127
>UNIPROTKB|Q89W70 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 EMBL:BA000040
GenomeReviews:BA000040_GR GO:GO:0003918 SUPFAM:SSF56719
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_767463.1 ProteinModelPortal:Q89W70 SMR:Q89W70
GeneID:1047796 KEGG:bja:bll0823 PATRIC:21185152
BioCyc:BJAP224911:GJEJ-831-MONOMER Uniprot:Q89W70
Length = 811
Score = 237 (88.5 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 116/481 (24%), Positives = 204/481 (42%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ NA D V VV++ ++ ++V + G G+PV+IH+ EG+ E
Sbjct: 50 GLHHMVYEVVDNAIDEALAG-HATRVDVVLNADNS-VTVRDDGRGIPVDIHKGEGISAAE 107
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGKRLKKYKQVFTNNM 196
+I L +D N K +GG +G G + N S++ + D K + Y + F +
Sbjct: 108 VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNK--EHYIE-FAH-- 162
Query: 197 GKKSEPNISKCKE-GDNWTKVSF--KPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSV 253
G P + G T+V+F PD K ++E D A ++ R+ +LA L V
Sbjct: 163 GDAVAPLVVVGDAPGKRGTEVTFLASPDTFK----NIEYDF-ATLEHRLRELA-FLNSGV 216
Query: 254 KVELNG--HRVP----------VKSFAEYVDMYPKSVTRFHERVNERW-----EICVTLS 296
+ L+ H V V+ F +Y+D K++ V E + +
Sbjct: 217 NIALSDMRHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWN 276
Query: 297 EGQFQQV-SFVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXXXXXXXX--XXLWV 353
+ + V F N I GGTH+ L
Sbjct: 277 DSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTA 336
Query: 354 FVNALIDNPAFDSQTKETLT---LRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK 410
++ + +P F SQTK+ L +R E + + ++ +++ ++ + A
Sbjct: 337 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQAAAA 396
Query: 411 QSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSE--QCTLILTEGDSAKALAMAGLSVVG 468
+ K + T+ + +S L LA + + + L + EGDSA A G +
Sbjct: 397 REAARKARELTRKSPL-SVSSLP-GKLADCQEKDPAKSELFIVEGDSAGGSAKQGRN--- 451
Query: 469 RDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMT 528
R+ V PLRGK+LNV +++L + +IG + LG E++ ++ LRY +++MT
Sbjct: 452 REFQAVLPLRGKILNVERVRPDKMLGSEQIGTLITALGTGISDEFS-IEKLRYHKIIVMT 510
Query: 529 D 529
D
Sbjct: 511 D 511
Score = 47 (21.6 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 555 MLAQDHDGSHIKGLLINFIH 574
M D DG+HI+ LL+ F +
Sbjct: 509 MTDADVDGAHIRTLLLTFFY 528
Score = 44 (20.5 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1161 LRKATPESLWVKDLDA-----LDMQLDELDKSD 1188
L + PE LW LD L +++ E+D++D
Sbjct: 750 LGEMNPEQLWETTLDTNARSLLQVKVKEVDEAD 782
>UNIPROTKB|A8ISW5 [details] [associations]
symbol:CHLREDRAFT_115934 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 GO:GO:0006265 eggNOG:COG0188 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 EMBL:DS496122
RefSeq:XP_001692279.1 ProteinModelPortal:A8ISW5 STRING:A8ISW5
EnsemblPlants:EDP04229 GeneID:5717863 KEGG:cre:CHLREDRAFT_115934
BioCyc:CHLAMY:CHLREDRAFT_115934-MONOMER Uniprot:A8ISW5
Length = 315
Score = 215 (80.7 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 60/190 (31%), Positives = 98/190 (51%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-SAYH-HGEQSLASTI 775
+ R++P + DGLKP R+IL+ + + + + V E +H HG+ ++ ++
Sbjct: 5 VSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAVYDSL 64
Query: 776 LGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXY 835
+ +AQDF S + L+Q +G FG+ + AA+ RY RL+P L
Sbjct: 65 VRLAQDF--SMRVPLVQGHGNFGSVD--ADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120
Query: 836 LNE--DGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL-NGEMM 892
+ D Q EP ++P +LVNGS+GI G +S IP +N ++VA +RRL+ N E+
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180
Query: 893 -EPMHPWYRG 901
E + RG
Sbjct: 181 TEELMECVRG 190
>UNIPROTKB|A9WGP2 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 HOGENOM:HOG000075154
RefSeq:YP_001636597.1 ProteinModelPortal:A9WGP2 STRING:A9WGP2
GeneID:5827483 KEGG:cau:Caur_3009 PATRIC:21417339
BioCyc:CAUR324602:GIXU-3058-MONOMER Uniprot:A9WGP2
Length = 636
Score = 171 (65.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 55/188 (29%), Positives = 93/188 (49%)
Query: 351 LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFL----KKVTAKSGIVETLLSW 406
L ++ + +P F SQTKE L +++ S+ F + T I+E +S
Sbjct: 322 LTAVISVKLKDPQFSSQTKEKLVSPEAASAVATVFSDAFSAWLDENPTEARRIIEKAISA 381
Query: 407 ANFKQSKDLKKNDGTKTEDVRGIS---KLEDANLAGGRNSEQCTLILTEGDSAKALAMAG 463
A + + K + + + G S KL D + N +C L + EGDSA G
Sbjct: 382 ARTRLAVQ-KVRETARKSAMEGFSLPGKLADCS---DPNPARCELYIVEGDSA-----GG 432
Query: 464 LSVVGRDR-F-GVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRY 521
+ GRDR F + PLRGK+LNV ++ +++L+N+E+ + +G G +++ + LRY
Sbjct: 433 TAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALITAIGTSIGDQFD-LSKLRY 491
Query: 522 GHLMIMTD 529
+ +MTD
Sbjct: 492 HRIFLMTD 499
Score = 105 (42.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 25/97 (25%), Positives = 45/97 (46%)
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYV 135
+ GL+ + E++ N+ D + +V V I ++ ++V + G G+PV IH +EG+
Sbjct: 36 INGLHTMVREVVDNSVDEVMAG-RATSVSVTIHRDGS-VTVSDDGSGIPVGIHPKEGIST 93
Query: 136 PELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFS 172
L+ L + K + G +G G N S
Sbjct: 94 LTLVMTRLHAGGKFGSGGYKVSSGLHGVGVSAVNALS 130
Score = 75 (31.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 45/195 (23%), Positives = 80/195 (41%)
Query: 454 DSAKALAMAGLSVVGR--DRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGV 511
++A+ AM G S+ G+ D P R +L V S+ + IL L+ +
Sbjct: 393 ETARKSAMEGFSLPGKLADCSDPNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKI 452
Query: 512 EYNNVKSLRYGHLMIMTD-QVLLAPLSFLLW--FILIFAWITTFCFMLAQDHDGSHIKGL 568
NV+ R ++ + + L+ + + F L M D DGSHI+ L
Sbjct: 453 L--NVEKSRLDRMLSNAEVRALITAIGTSIGDQFDLSKLRYHRIFLMTDADVDGSHIRTL 510
Query: 569 LINFIHSFW-PSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSW 627
L+ F P + F+ + P+ + + +V + YS + +A+ L
Sbjct: 511 LLTFFFRHMRPLITNGHLFIAQ--PPLYRIKHGREQVYT-YSDAERDAYLSKLPPGTKV- 566
Query: 628 SIKYYKGLGTSTSKE 642
I+ YKGLG +++
Sbjct: 567 EIQRYKGLGEMNAEQ 581
>UNIPROTKB|Q3KL34 [details] [associations]
symbol:gyrA_2 "DNA gyrase subunit A" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 EMBL:CP000051 GenomeReviews:CP000051_GR GO:GO:0006265
eggNOG:COG0188 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 RefSeq:YP_328486.1 ProteinModelPortal:Q3KL34
STRING:Q3KL34 GeneID:3687724 KEGG:cta:CTA_0717 PATRIC:32023358
HOGENOM:HOG000028598 OMA:ERAIPHI ProtClustDB:PRK09630
BioCyc:CTRA315277:GI4C-738-MONOMER Uniprot:Q3KL34
Length = 490
Score = 213 (80.0 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 71/254 (27%), Positives = 126/254 (49%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILG 777
L+R+IP ++DGLKP QR++L+ F+ + K KVA +G + + HG+ + ++
Sbjct: 21 LERAIPHVLDGLKPVQRRLLWTLFRMDDGKMHKVANIAGRTM--ALHPHGDAPIVEALVV 78
Query: 778 MAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITR-FLFPXXXXXXXXYL 836
+A N L++ G FG G AA ARYI RLSP+ + LF +
Sbjct: 79 LA------NKGFLIETQGNFGNPLTGDPHAA-ARYIEARLSPLAKEVLF--NTDLMTFHD 129
Query: 837 NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMH 896
+ DG++ EP IP +L++G +GI G ++ I +N D++ +LN + +
Sbjct: 130 SYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQIAILNDQPFSLL- 188
Query: 897 PWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQ 956
P + GGT++ + ++ + + I+ +N+ TL IKE+ T+ +E+ +
Sbjct: 189 PDFPP-GGTMDASDYQDGLGSIVLRATIDIINDKTLLIKEICPSTTTETLIRSIENAAKR 247
Query: 957 NDSFIRGFRQYSDD 970
I + +S D
Sbjct: 248 GIIKIDSIQDFSTD 261
>UNIPROTKB|A8IIG8 [details] [associations]
symbol:TOP3 "DNA gyrase subunit B-like protein"
species:3055 "Chlamydomonas reinhardtii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 EMBL:DS496117
RefSeq:XP_001690535.1 UniGene:Cre.5744 ProteinModelPortal:A8IIG8
STRING:A8IIG8 EnsemblPlants:EDP05794 GeneID:5716144
KEGG:cre:CHLREDRAFT_114600 BioCyc:CHLAMY:CHLREDRAFT_114600-MONOMER
Uniprot:A8IIG8
Length = 649
Score = 130 (50.8 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 65/244 (26%), Positives = 104/244 (42%)
Query: 305 FVNGIATIKGGTHVDYVANQXXXXXXXXXXXXXXXXXX----XXXXXXXXLWVFVNALID 360
F N I T+ GGTH++ + L V+ +
Sbjct: 273 FANSIHTVDGGTHMEGLRAGLTRAVTQLGRKAKQIKDSDPPLSGEHVREGLGAVVSVKVP 332
Query: 361 NPAFDSQTKETL---TLRQSSFGSKCELSEEFLKKVTAKSGIV--ETLLSWANFKQSKDL 415
NP F+ QTK L +R+ + E E+L+ A + + L S + ++
Sbjct: 333 NPEFEGQTKTRLGNPEVRKIVENAVYEAVGEWLEAHPAALAALCAKALTSARAAEAARKA 392
Query: 416 KKNDGTKTEDVRGISKLEDANLAG--GRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F 472
++ KT G S L LA N E+ + + EGDSA G + RDR F
Sbjct: 393 RELVRRKTSLFTGRSTLP-GKLADCTSTNREETEIYIVEGDSA-----GGSAKQARDRRF 446
Query: 473 -GVFPLRGKLLNV-REASSNQVL-NNSEIGNIKKILGLKQGVEYNN----VKSLRYGHLM 525
+ PL+GK+LNV R +N+++ N+EI N+ LG ++ V + K L YG ++
Sbjct: 447 QAILPLKGKILNVERLTDANELMYKNTEISNLIA-LGYERTVGVRSRCHAFKLLLYGKIV 505
Query: 526 IMTD 529
++TD
Sbjct: 506 VLTD 509
Score = 120 (47.3 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ NA D Q AV+V +D +SV ++G G+PV++H G E
Sbjct: 24 GLHHLIWEVVDNAVDEVQAG-HASAVEVDVDLSSGWVSVVDNGRGIPVDVHPVTGKSALE 82
Query: 138 LIFGHLLTSSNY--DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFT 193
+ L + D++ K +GG +G G + N S+E +E + +Y Q ++
Sbjct: 83 TVLTVLHAGGKFGGDNSGYKVSGGLHGVGISVVNALSSE--LEVTVWRAGSRYSQRYS 138
Score = 65 (27.9 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF-YSMPDYEAWK 617
D DG+HI+ LL+ F+ P L V + P+ K + GK + + +S + A
Sbjct: 511 DVDGAHIRTLLLTFLFRHRPQLFAAGRVYVA-VPPLYKV--ERGKSVWWAHSDAELAALV 567
Query: 618 ESLGGNASSWSIKYYKGLG 636
+S++ +KGLG
Sbjct: 568 SEQRLAPGGYSVQRFKGLG 586
>TIGR_CMR|APH_0899 [details] [associations]
symbol:APH_0899 "DNA gyrase, A subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:YP_505474.1 ProteinModelPortal:Q2GJH7
STRING:Q2GJH7 GeneID:3931204 KEGG:aph:APH_0899 PATRIC:20950506
BioCyc:APHA212042:GHPM-912-MONOMER Uniprot:Q2GJH7
Length = 906
Score = 211 (79.3 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 108/425 (25%), Positives = 183/425 (43%)
Query: 706 VNKEL----ILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSE 760
+ KEL + ++M+ + R+IP + DGLKP R+IL+ +K + + + + V +
Sbjct: 10 IEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPYKKAARVVGD 69
Query: 761 -HSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLS 818
YH H + ++ ++ MAQDF S + L+ G FG+ + G AS RY RL+
Sbjct: 70 VMGRYHPHADTAIYDALVRMAQDF--SLLVPLIDSQGNFGSVD--GDPPASMRYTEARLA 125
Query: 819 PITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPR 877
FL + N D + EP P VLVNG+ G+ G S+ IP++N
Sbjct: 126 QAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIPSHNLG 185
Query: 878 DIV-ANVRRLLNGEM-MEPMHPWYRG--F--GGTIEKTAS-KEAGVTYTVTGII------ 924
+I+ A+V + N E+ +E + G F GG I A K A T T II
Sbjct: 186 EIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIIIQGKTHI 245
Query: 925 EEV--NETTLRIKELPIRRWTQDYREFLESIIDQND-SFIRGFRQYSDDTTVDFEVFLSE 981
EE+ + I E+P + E + ++ + + R S+ + + + L +
Sbjct: 246 EELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRVAIELKK 305
Query: 982 ESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRK 1041
+ + LL L T+ S + + L +S+ + +I+E F R E +R
Sbjct: 306 QINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLI---EIIETFVAFRKEVLVRRT 362
Query: 1042 KVQXXXXXXXXXXXXXXVRFILGVVN-GEIVVNNRKRTDLL---LELRQKGFTPFPKNSK 1097
+ + + + V+N EIV R D LR++ ++P +
Sbjct: 363 RYRLKKVRERAHLF---IGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVRG 419
Query: 1098 SIEAV 1102
IE V
Sbjct: 420 MIELV 424
>UNIPROTKB|Q8EYL9 [details] [associations]
symbol:LA_4194 "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 EMBL:AE010300 GenomeReviews:AE010300_GR
HSSP:P06786 RefSeq:NP_714374.1 ProteinModelPortal:Q8EYL9
GeneID:1153536 KEGG:lil:LA_4194 PATRIC:22389227
HOGENOM:HOG000040411 OMA:EATIESK ProtClustDB:CLSK575166
BioCyc:LINT189518:GJBB-3320-MONOMER Uniprot:Q8EYL9
Length = 711
Score = 180 (68.4 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 68/255 (26%), Positives = 117/255 (45%)
Query: 28 EEMYQKKSQLEHILLRPDTYIGSIEKHT--QALWIYEEESK-TMIHRTISYVPGLYKIFD 84
E ++K S +EH+ +R ++G T Q + E K ++H + VP K D
Sbjct: 15 ERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHEELEDVPAKLKCLD 74
Query: 85 EILVNAADN---KQRD---PKMDAV-KVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYV 135
E +NA D Q+D P+ D + K+++ D +++ ++G G+P EGVY+
Sbjct: 75 EACMNAVDEYRKNQKDKSIPEKDKMSKLIVQLSSDRKCVTIADNGRGIPAT--NAEGVYL 132
Query: 136 PELIFGHLLTSSNYDDNVKKT-TGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTN 194
HL+ N+DD+VK+ G+NG G L + S F ++T + +K++FT
Sbjct: 133 ------HLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTVNNG--SSFKKLFTV 184
Query: 195 NMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLE-----DDVVALMKK----RVVDL 245
+ K + K + D + + KF +L D + L+KK +++
Sbjct: 185 HDDVKKQIRSYKLSKEDTERVFLYFDEHGKFTDCNLLTKDQIDKLSPLLKKTNMQELIEK 244
Query: 246 AGCL--GKSVKVELN 258
A G SV+ ELN
Sbjct: 245 ASKEDHGTSVEFELN 259
Score = 179 (68.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 86/341 (25%), Positives = 144/341 (42%)
Query: 204 ISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCL-GKSVKVELNGHRV 262
I K + D+ T V F+ + FN + +V LMK+ + D+A G V+ G +
Sbjct: 242 IEKASKEDHGTSVEFELNPKYFNNLDISFNV-DLMKQYLQDIAMTNPGLEVQFVFKGKKE 300
Query: 263 PVKSFAEYVD-MYPKSVTRFHER------VNERWEICVTLSEGQFQQVSFVNGIATIKGG 315
K F + +D ++ S +++ + + L GQ + +++VN I +GG
Sbjct: 301 KYK-FKKGLDEIFSHSDLVYYKMDYVAPGSASQLHLETYLVIGQNKNLTWVNSIFAPQGG 359
Query: 316 THVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXL----WVFVNALIDNPAFDSQTKET 371
+ ++Y+ N+ + ++VNA + NP F SQ K
Sbjct: 360 SAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRFKSQDKSY 419
Query: 372 LT--LRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGI 429
L L + + + ++F+KK I + K +D +K G K I
Sbjct: 420 LINDLNEDIRNAVDKHLDKFIKKTGLLEEIKLQMEKRTQLKAFEDAQK--GLKKASRMNI 477
Query: 430 SKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRF-GVFPLRGKLLNVREAS 488
KL G + L + EGDSA +AGL + G+FPLRGK LN + S
Sbjct: 478 PKLMPPT--GKQGDPGRVLFVAEGDSA----IAGLRPARNPKLHGLFPLRGKPLNCKGLS 531
Query: 489 SNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+ + N E+ NI I+GL + ++ L Y + I+TD
Sbjct: 532 IAKAIANEELKNIVAIVGLPLDQKVKSLDELNYEKVSIITD 572
Score = 82 (33.9 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPI----VKATNKNGKVLSFYSMPDYE 614
D DG I+ L+++F + +WP L ++ F+ P+ VK +K + + DYE
Sbjct: 574 DFDGYAIRSLMLSFFYEYWPELFEL-GFIHISSAPLYEVDVKFGDKKKETIFCIDDKDYE 632
Query: 615 AW-KESLGGNASSWSIKYYKGLGTSTSKEGKEY 646
K G K KGLG T KE ++
Sbjct: 633 DLIKRVEKGGGEITRKKRNKGLG-ETGKEAMKF 664
Score = 40 (19.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 992 LLKKFKLTTTISTSNMHL-FDSKGVIKKYDTPEQILEEFFHIRLEFYE 1038
L+K++ ++ + + F KG +KY + + E F H L +Y+
Sbjct: 274 LMKQYLQDIAMTNPGLEVQFVFKGKKEKYKFKKGLDEIFSHSDLVYYK 321
>UNIPROTKB|A9WK19 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 eggNOG:COG0188 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 HOGENOM:HOG000076279 RefSeq:YP_001634859.1
ProteinModelPortal:A9WK19 SMR:A9WK19 STRING:A9WK19 GeneID:5828345
KEGG:cau:Caur_1241 PATRIC:21413315
BioCyc:CAUR324602:GIXU-1260-MONOMER Uniprot:A9WK19
Length = 822
Score = 210 (79.0 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 84/342 (24%), Positives = 146/342 (42%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSE--HSAYHHGEQSLASTI 775
+ R++P DGLKP QR+IL+ + F + + V + + HG+ ++ +
Sbjct: 28 VSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSARIVGDVLGKMHPHGDSAVYDAL 87
Query: 776 LGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXY 835
MAQ + S L+ G FG+ + G A+ RY RL+PI L +
Sbjct: 88 ARMAQPW--SMRYPLIDGQGNFGSID--GDPPAAMRYTEARLAPIAEELLSEIEKDTVDF 143
Query: 836 L-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNG----- 889
N DG EP I+P +L+NG+ GI G ++ IP +N ++ + L+
Sbjct: 144 RDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNLGELCDAISYLIEHPEATV 203
Query: 890 -EMME----PMHPW---YRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRI--KELPI 939
E+M+ P P G G + ++ +T IEE I ELP
Sbjct: 204 EELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTHIEEAGRGAFMIVVTELPY 263
Query: 940 RRWTQDYREFLESII-DQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKL 998
+ +E + ++ D+ IR R SD T + + L +++ + L K ++
Sbjct: 264 QVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILLKQDAQPKKVLNALYKHTQM 323
Query: 999 TTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKR 1040
TT + + L + G + T +++L+E+ R E +R
Sbjct: 324 QTTFGINMLALVEH-GRQPRVLTLKRLLQEYITHRQEVIRRR 364
>UNIPROTKB|P05653 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AL009126
GenomeReviews:AL009126_GR Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 EMBL:D26185 EMBL:X02369 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 PIR:F22930
RefSeq:NP_387888.1 ProteinModelPortal:P05653 SMR:P05653
IntAct:P05653 EnsemblBacteria:EBBACT00000002843 GeneID:940002
KEGG:bsu:BSU00070 PATRIC:18971463 GenoList:BSU00070
ProtClustDB:PRK05560 BioCyc:BSUB:BSU00070-MONOMER BindingDB:P05653
ChEMBL:CHEMBL4216 Uniprot:P05653
Length = 821
Score = 205 (77.2 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 93/354 (26%), Positives = 152/354 (42%)
Query: 700 IKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 758
I S + + ++M+ + R++P + DGLKP R+IL+ + + + V
Sbjct: 12 INISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIV 71
Query: 759 SEH-SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTR 816
E YH HG+ ++ +++ MAQDF + L+ +G FG+ + G AA+ RY R
Sbjct: 72 GEVIGKYHPHGDSAVYESMVRMAQDF--NYRYMLVDGHGNFGSVD--GDSAAAMRYTEAR 127
Query: 817 LSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPI-IPTVLVNGSEGIGTGWSSYIPNY 874
+S I+ + Y N DG + EP MP P +LVNG+ GI G ++ IP +
Sbjct: 128 MSKISMEILRDITKDTIDYQDNYDGSEREPV-VMPSRFPNLLVNGAAGIAVGMATNIPPH 186
Query: 875 NPRDIVANVRRLLNG------EMME----PMHPW---YRGFGGTIEKTASKEAGVTYTVT 921
+I+ V + E+ME P P G G + S +T
Sbjct: 187 QLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAK 246
Query: 922 GIIEEVNETTLRI--KELPIRRWTQDYREFLESIIDQ-NDSFIRGF---RQYSDDTTVDF 975
IE+ + RI ELP + + + +E I D D I G R SD T +
Sbjct: 247 AEIEQTSSGKERIIVTELP---YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRI 303
Query: 976 EVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEF 1029
+ + ++ L K+ L T+ + + L D + K T +Q LE +
Sbjct: 304 VIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ---PKVLTLKQCLEHY 354
>UNIPROTKB|Q59192 [details] [associations]
symbol:parE "DNA topoisomerase 4 subunit B" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000075154 EMBL:Z73234
EMBL:AF024713 PIR:C69637 RefSeq:NP_389691.2
ProteinModelPortal:Q59192 SMR:Q59192
EnsemblBacteria:EBBACT00000000468 GeneID:936151 KEGG:bsu:BSU18090
PATRIC:18975449 GenoList:BSU18090 KO:K02622 OMA:TDGTGLH
ProtClustDB:PRK05559 BioCyc:BSUB:BSU18090-MONOMER BindingDB:Q59192
ChEMBL:CHEMBL3485 HAMAP:MF_00939 TIGRFAMs:TIGR01058 Uniprot:Q59192
Length = 655
Score = 159 (61.0 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 73/257 (28%), Positives = 118/257 (45%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + EI+ N+ D D + V I +++ ISV + G G+P +H+ G PE
Sbjct: 38 GLHHLVYEIVDNSVDEVLAGHG-DHIIVKIHKDNS-ISVQDRGRGMPTGMHKL-GKPTPE 94
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
+I L + KT+GG +G GA + N S E++ T + Y+Q F N G
Sbjct: 95 VILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALS-EWLTVTIERDGFV-YQQRFENG-G 151
Query: 198 KK--SEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV 255
K S I K K+ T FKPD F+ T + ++ +R+ + A L K +K+
Sbjct: 152 KPVTSLEKIGKTKK--TGTLTHFKPDPTMFSTTTYNFETLS---ERLRESAFLL-KGLKI 205
Query: 256 EL----NGHRVP------VKSFAEYV----DMYPKSVTRFHERVNERWEICVTLSEGQFQ 301
EL N R +++F Y+ D+ + V+ E + + ++G +
Sbjct: 206 ELIDERNDQREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSE 265
Query: 302 QV-SFVNGIATIKGGTH 317
+ SFVN + T GGTH
Sbjct: 266 NILSFVNNVRTKDGGTH 282
Score = 146 (56.5 bits), Expect = 6.7e-11, Sum P(3) = 6.7e-11
Identities = 74/288 (25%), Positives = 113/288 (39%)
Query: 258 NGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQV-SFVNGIATIKGGT 316
NG V E D+ + V+ E + + ++G + + SFVN + T GGT
Sbjct: 222 NGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGT 281
Query: 317 HVDYVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDN--PA----FDSQTKE 370
H + ++A+I P F+ QTK
Sbjct: 282 HESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKG 341
Query: 371 TLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGIS 430
L ++ +SE+ L ++ TLL K S+ + + E G
Sbjct: 342 KLGTSEARSAVDAIVSEQ-LAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKK 400
Query: 431 -KLEDANL------AGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F-GVFPLRGKL 481
K +A L AG RN + L L EGDSA G + GRDR F V PLRGK+
Sbjct: 401 RKKSEATLSGKLTPAGSRNPAKNELYLVEGDSA-----GGSAKQGRDRRFQAVLPLRGKV 455
Query: 482 LNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+N +A + N EI I +G G +++ + + Y ++IMTD
Sbjct: 456 INTEKAKLADIFKNEEINTIIHAIGGGVGADFS-IDDINYDKIIIMTD 502
Score = 98 (39.6 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 34/134 (25%), Positives = 60/134 (44%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKV-LSFYSMPDY 613
M D DG+HI+ LL+ F + + L++ + + P+ K + +GK + Y+ D
Sbjct: 500 MTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIA-LPPLYKVSKGSGKKEIIEYAWSD- 557
Query: 614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFS 673
E + L ++I+ YKGLG + + E N + V D +E +
Sbjct: 558 EEMGDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNP--ESRTLVRVKIDDAARVERRVT 615
Query: 674 K---KKIEARKKWL 684
K+E R+KW+
Sbjct: 616 TLMGDKVEPRRKWI 629
Score = 45 (20.9 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYE 62
E+ Q LE + RP YIGS + +YE
Sbjct: 11 EDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYE 45
>UNIPROTKB|Q8A1S9 [details] [associations]
symbol:BT_3579 "Topoisomerase IV subunit A" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 SMART:SM00434 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 KO:K02621 HSSP:P09097 HOGENOM:HOG000028598
RefSeq:NP_812491.1 ProteinModelPortal:Q8A1S9 GeneID:1072261
KEGG:bth:BT_3579 PATRIC:21062161 OMA:DTQGNWG ProtClustDB:PRK12758
BioCyc:BTHE226186:GJXV-3646-MONOMER Uniprot:Q8A1S9
Length = 850
Score = 204 (76.9 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 77/268 (28%), Positives = 126/268 (47%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYH-HGEQSLASTIL 776
L+R++P + DGLKP QR+IL S KR + + + + + V +H HG+ S+ ++
Sbjct: 15 LERAVPHINDGLKPVQRRILH-SMKR--LDDGRYNKVANIVGHTMQFHPHGDASIGDALV 71
Query: 777 GMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITR-FLF-PXXXXXXXX 834
+ Q + L+ G +G G AA+ RYI RLS +F P
Sbjct: 72 QLGQKDL------LIDCQGNWGNILTGD-GAAAPRYIEARLSKFALDIVFNPKTTEWKLS 124
Query: 835 YLNEDGQQIEPTWYMPI-IPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME 893
Y DG+ EP +P+ P +L G EGI G SS I +N ++ L+GE +
Sbjct: 125 Y---DGRNKEPVT-LPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHGESFQ 180
Query: 894 PMHPWYRGFGGTIE--KTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLE 951
++P ++ GG+I+ K E G V I +++ TL I E+P + T ++
Sbjct: 181 -LYPDFQT-GGSIDVAKYNDGERGGAVKVRAKINKLDNKTLAITEIPYGKTTSTV---ID 235
Query: 952 SIIDQNDSFIRGFRQYSDDTTVDFEVFL 979
SI+ D R+ D+T + E+ +
Sbjct: 236 SILKAVDKGKIKIRKVDDNTAANVEILV 263
>TAIR|locus:2040496 [details] [associations]
symbol:AT2G13720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR013760 GO:GO:0005524 GO:GO:0005694 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC006436 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 IPI:IPI00531706 PIR:A84510 RefSeq:NP_178993.1
UniGene:At.52729 ProteinModelPortal:Q9SKH1
EnsemblPlants:AT2G13720.1 GeneID:815856 KEGG:ath:AT2G13720
TAIR:At2g13720 eggNOG:NOG293675 ProtClustDB:CLSN2913044
Genevestigator:Q9SKH1 Uniprot:Q9SKH1
Length = 223
Score = 178 (67.7 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 627 WSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQ 686
W+IK+YKG+ +E K N+ +K+ F+W++ + A+E AF + + +KKW+ +
Sbjct: 92 WTIKFYKGVWVQVMRE-KNVLSNVDQNKRFFIWDEGSEA-ALENAFGTSE-DKQKKWIEK 148
Query: 687 FEPGNHLDQKEKYIKYSDFVNKELILFSMADLQR 720
+ PG LD K++ I YSDFV K+L L+ QR
Sbjct: 149 YVPGTFLDSKKQQIMYSDFVTKKLKLYFTTSNQR 182
>UNIPROTKB|Q07702 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0005618 GO:GO:0005694 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0046677 EMBL:BX842572
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
EMBL:L27512 EMBL:L11919 EMBL:X72872 PIR:D70698 RefSeq:NP_214520.1
RefSeq:NP_334415.1 RefSeq:YP_006513318.1 PDB:3IFZ PDB:3ILW PDB:3UC1
PDBsum:3IFZ PDBsum:3ILW PDBsum:3UC1 ProteinModelPortal:Q07702
SMR:Q07702 EnsemblBacteria:EBMYCT00000001336
EnsemblBacteria:EBMYCT00000068956 GeneID:13315979 GeneID:887105
GeneID:922437 KEGG:mtc:MT0006 KEGG:mtu:Rv0006 KEGG:mtv:RVBD_0006
PATRIC:18121736 TubercuList:Rv0006 BindingDB:Q07702
ChEMBL:CHEMBL4165 EvolutionaryTrace:Q07702 Uniprot:Q07702
Length = 838
Score = 203 (76.5 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 58/195 (29%), Positives = 98/195 (50%)
Query: 689 PGNHLDQKEKYIKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFCSFKRNFIK 747
P + LD+ E + + + I ++M+ + R++P + DGLKP R++L+ F F
Sbjct: 8 PDDSLDRIEP-VDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRP 66
Query: 748 EAKVAQFSGYVSEHSA-YH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGK 805
+ A+ + V+E YH HG+ S+ +++ MAQ + S L+ G FG+ G
Sbjct: 67 DRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPW--SLRYPLVDGQGNFGS--PGND 122
Query: 806 DAASARYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIG 864
A+ RY RL+P+ + ++ N DG+ EPT P +L NGS GI
Sbjct: 123 PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 182
Query: 865 TGWSSYIPNYNPRDI 879
G ++ IP +N R++
Sbjct: 183 VGMATNIPPHNLREL 197
>UNIPROTKB|Q3KMH3 [details] [associations]
symbol:gyrA_1 "DNA gyrase subunit A" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_327997.1 ProteinModelPortal:Q3KMH3 STRING:Q3KMH3
GeneID:3687233 KEGG:cta:CTA_0207 PATRIC:32022280
BioCyc:CTRA315277:GI4C-249-MONOMER Uniprot:Q3KMH3
Length = 836
Score = 200 (75.5 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 64/203 (31%), Positives = 98/203 (48%)
Query: 694 DQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAK 750
+ KE Y++YS +I+ R++P DGLKP QR+IL+ + N +K K
Sbjct: 16 EMKESYLRYS----MSVII------SRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRK 65
Query: 751 VAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAAS 809
A+ G S YH HGE + T++ MAQD+ + L+ G FG+ + G AA+
Sbjct: 66 CAKICGDTS--GDYHPHGESVIYPTLVRMAQDW--AMRYPLVDGQGNFGSID--GDPAAA 119
Query: 810 ARYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWS 868
RY RL+ FL + N D + EP + P +L NGS GI G +
Sbjct: 120 MRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMA 179
Query: 869 SYIPNYNPRDIV-ANVRRLLNGE 890
+ IP +N +++ A + L N +
Sbjct: 180 TNIPPHNLGELIEATLLVLANSQ 202
Score = 55 (24.4 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 1123 VQSIDYDYLLSMAIGTLTLEKVQGLLADR-----DKLNEEVDDLRKATPESLWVKDLDAL 1177
V+ + ++AI L L ++ GL AD+ +L E++ RK E VKD+
Sbjct: 411 VELFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIRE 470
Query: 1178 DMQ-LDELDKSDARAEEE 1194
++Q L ++ K+ R E
Sbjct: 471 ELQELHKVHKTPRRTRIE 488
>UNIPROTKB|P35885 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 EMBL:L27063 EMBL:AL939118 RefSeq:NP_628060.1
ProteinModelPortal:P35885 GeneID:1099309 KEGG:sco:SCO3873
PATRIC:23737530 Uniprot:P35885
Length = 857
Score = 202 (76.2 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 56/184 (30%), Positives = 93/184 (50%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEA---KVAQFSGYVSEHSAYH-HGEQSLAS 773
+ R++P + DGLKP R++L+ + + E K A+ G V + YH HG+ S+
Sbjct: 35 VSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCARVVGDVMGN--YHPHGDSSIYD 92
Query: 774 TILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXX 833
++ +AQ + S + L+ NG FG+ G AA+ RY +++P++ +
Sbjct: 93 ALVRLAQPW--SMRMPLVDSNGNFGS--PGNDPAAAMRYTECKMAPLSMEMVRDIDEETV 148
Query: 834 XYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMM 892
+ N DG+ EPT P +L+NGS GI G ++ IP +N R++ A + L E
Sbjct: 149 DFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYL--ENY 206
Query: 893 EPMH 896
E H
Sbjct: 207 EASH 210
>UNIPROTKB|P35886 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27063
EMBL:AL939118 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
HOGENOM:HOG000075154 RefSeq:NP_628061.1 ProteinModelPortal:P35886
GeneID:1099310 KEGG:sco:SCO3874 PATRIC:23737532 Uniprot:P35886
Length = 686
Score = 133 (51.9 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 59/254 (23%), Positives = 106/254 (41%)
Query: 290 EICVTLSEGQFQQV-SFVNGIATIKGGTHVD----YVANQXXXXXXXXXXXXXXXXXXXX 344
E+ + + G + V SF N I T +GGTH + + +
Sbjct: 300 EVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTG 359
Query: 345 XXXXXXLWVFVNALIDNPAFDSQTKETL-TLRQSSFGSKC---ELSEEFLKKVTAKSGIV 400
L ++ + P F+ QTK L +F K L++ + + I+
Sbjct: 360 DDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADII 419
Query: 401 ETLLSWANFK----QSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSA 456
+ A+ + +++DL + G E KL D + +C + + EGDSA
Sbjct: 420 RKGIQAAHARVAARKARDLTRRKGL-LESASLPGKLSDCQ---SNDPTKCEIFIVEGDSA 475
Query: 457 KALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYN-N 515
A +G + + + P+RGK+LNV +A +++L N EI + G GV + +
Sbjct: 476 GGSAKSGRNPQYQ---AILPIRGKILNVEKARIDRILQNQEIQAMISAFGT--GVHEDFD 530
Query: 516 VKSLRYGHLMIMTD 529
++ LRY +++M D
Sbjct: 531 IEKLRYHKIILMAD 544
Score = 111 (44.1 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 50/194 (25%), Positives = 80/194 (41%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+ + E++ N+ D D + V I + + V N G G+PV I EG E
Sbjct: 62 GLHHLVQEVVDNSVDEALAG-HADTIDVTILPDGGVRVVDN-GRGIPVGIVPSEGKPAVE 119
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET-ADGKR-LKKYKQ-VFTN 194
++ L + +GG +G G + N ST +E DG R ++YK V T
Sbjct: 120 VVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTA 179
Query: 195 NMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVK 254
++ + + T V+F D F T D + +R ++A L K +K
Sbjct: 180 SLARHEATE-------ETGTTVTFWADGDIFETT---DYSFETLSRRFQEMA-FLNKGLK 228
Query: 255 VELNGHRVPVKSFA 268
+ L R K+ A
Sbjct: 229 INLTDERESAKATA 242
Score = 57 (25.1 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYE 614
M D DG HI LL+ F+ F L++ + P+ K YS + +
Sbjct: 542 MADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSR-PPLYKIKWGRDDFEYAYSDRERD 600
Query: 615 AWKE---SLGGNASSWSIKYYKGLGTSTSKE 642
A E G S++ +KGLG ++E
Sbjct: 601 ALIEMGRQAGKRIREDSVQRFKGLGEMNAEE 631
>TIGR_CMR|BA_0006 [details] [associations]
symbol:BA_0006 "DNA gyrase, A subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006265 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 Gene3D:1.10.268.10 HOGENOM:HOG000076279
HSSP:P09097 RefSeq:NP_842578.1 RefSeq:YP_016609.1
RefSeq:YP_026297.1 ProteinModelPortal:Q81W30 SMR:Q81W30
DNASU:1083944 EnsemblBacteria:EBBACT00000012746
EnsemblBacteria:EBBACT00000018520 EnsemblBacteria:EBBACT00000022030
GeneID:1083944 GeneID:2816389 GeneID:2851434 KEGG:ban:BA_0006
KEGG:bar:GBAA_0006 KEGG:bat:BAS0006
BioCyc:BANT260799:GJAJ-6-MONOMER BioCyc:BANT261594:GJ7F-6-MONOMER
Uniprot:Q81W30
Length = 823
Score = 193 (73.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 57/200 (28%), Positives = 95/200 (47%)
Query: 691 NHLDQKEKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEA 749
N + + I S + + ++M+ + R++P + DGLKP R++L+ +
Sbjct: 4 NQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADK 63
Query: 750 KVAQFSGYVSEH-SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDA 807
+ + V E YH HG+ ++ T++ MAQDF S L+ +G FG+ + G A
Sbjct: 64 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDF--SQRYMLVDGHGNFGSVD--GDSA 119
Query: 808 ASARYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTG 866
A+ RY R+S I+ L Y N DG + EP P +LVNG+ GI G
Sbjct: 120 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 179
Query: 867 WSSYIPNYNPRDIVANVRRL 886
++ IP + +++ V L
Sbjct: 180 MATNIPPHQLGEVIDGVLAL 199
Score = 57 (25.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 1133 SMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPE--SLWVKDLDALDMQLDELDKSDAR 1190
+ AI + L+++ GL +R+K+ +E DL K E ++ + L++ +EL + R
Sbjct: 422 AQAILDMRLQRLTGL--EREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479
Query: 1191 AEEER 1195
++R
Sbjct: 480 FNDKR 484
>TIGR_CMR|NSE_0958 [details] [associations]
symbol:NSE_0958 "DNA gyrase, A subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006265 eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 RefSeq:YP_506822.1
ProteinModelPortal:Q2GCH4 STRING:Q2GCH4 GeneID:3932182
KEGG:nse:NSE_0958 PATRIC:22681889
BioCyc:NSEN222891:GHFU-960-MONOMER Uniprot:Q2GCH4
Length = 869
Score = 197 (74.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 82/314 (26%), Positives = 140/314 (44%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-SAYH-HGEQSLASTI 775
+ R+IP + DGLKP R+IL+ + +F + + + E YH HG+ ++ +
Sbjct: 26 INRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSARVIGEVIGKYHPHGDSAIYDAL 85
Query: 776 LGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXY 835
+ MAQ+F S + L+ G FG+ + G AA+ RY RL I++FL +
Sbjct: 86 VRMAQNF--SLLVPLIDGQGNFGSID--GDPAAAMRYTEVRLEYISKFLLDDLYENSVDF 141
Query: 836 L-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL--NGEMM 892
N D + EP P +LVNG+ G+ G ++ +P +N +++ + L N
Sbjct: 142 RSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNLSEVIEACKLYLENNNVTT 201
Query: 893 EPMHPWYRG--F--GGTI--EK--TASKEAG----VTYTVTGIIEEVNETTLRIKELPIR 940
+ + +G F GG I E+ AS E+G + + T E + + ELP +
Sbjct: 202 DELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKTHFEETEAGKAIIVDELPYQ 261
Query: 941 RWTQDYREFLESIIDQN--DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKL 998
E + ++ + DS I R S+ + + L + L + +L
Sbjct: 262 VNKAKLIENIALLVKEKRLDS-ISDLRDESNKEGIRVVIELKRGASFEVVLNQLFQMTQL 320
Query: 999 TTTISTSNMHLFDS 1012
T+ ST NM L D+
Sbjct: 321 QTSYST-NMVLLDN 333
>UNIPROTKB|O67108 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 PIR:A70385
RefSeq:NP_213671.1 PDB:3NO0 PDBsum:3NO0 ProteinModelPortal:O67108
GeneID:1193742 KEGG:aae:aq_980 PATRIC:20959298 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 OMA:HRLEVIL ProtClustDB:CLSK2299574
BioCyc:AAEO224324:GJBH-704-MONOMER EvolutionaryTrace:O67108
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Uniprot:O67108
Length = 744
Score = 203 (76.5 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 101/366 (27%), Positives = 163/366 (44%)
Query: 700 IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 758
I + V + I ++M+ + R+IP + DGLKP QR+IL+ ++ + + + + V
Sbjct: 10 IPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKKSARIV 69
Query: 759 SEH-SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTR 816
E YH HG+Q++ ++ MAQDF + L+ G FG+ + G AA RY +
Sbjct: 70 GETLGKYHPHGDQAVYEALVRMAQDF--TMRYPLIIGQGNFGSID--GDPAAQMRYTEAK 125
Query: 817 LSPIT-RFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYN 875
LSP+ L N D +EP P +L NG+ GI G ++ IP +N
Sbjct: 126 LSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPHN 185
Query: 876 PRDIV-ANVRRLLNGEM-MEPMHPWYRG--F--GGTIEKTAS-KEAGVT----YTVTGI- 923
++ A V+ N ++ ++ + +G F GG IE A KE T V G
Sbjct: 186 LTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKVKGKA 245
Query: 924 -IEEVNETTLRI--KELPIRRWTQDYREFLESIIDQ-NDSFIRGFRQYSDDTTVDFEVFL 979
+E+V RI E+P + + E ++ I D + I+ D+T + + +
Sbjct: 246 HVEKVQGGRERIVITEIP---YQVNKAELIKKIADNVRNGKIKEISDIRDETDKE-GIRI 301
Query: 980 SEESMMRTKQEGLLKKFKLTTTISTS---NMHLFDSKGVIKKYDTPEQILEEFFHIRLEF 1036
E K E +LKK T + N+ + K K D + +L EF RLE
Sbjct: 302 VVELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEP-KLVDI-KTLLREFIKHRLEV 359
Query: 1037 YEKRKK 1042
+R K
Sbjct: 360 ILRRSK 365
Score = 41 (19.5 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 1133 SMAIGTLTLEKVQGLLADRDKLNEEVDDLRK 1163
+ A+ L L+++ L +R+KL EE +LR+
Sbjct: 419 AQAVLDLRLQRLTSL--EREKLLEEEKELRE 447
>GENEDB_PFALCIPARUM|PFL1915w [details] [associations]
symbol:PFL1915w "dna gyrase subunit b, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE014188 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0020011 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 HOGENOM:HOG000075156
GenomeReviews:AE014188_GR HSSP:P06982 RefSeq:XP_001350789.1
ProteinModelPortal:Q8I528 IntAct:Q8I528 MINT:MINT-1670662
PRIDE:Q8I528 EnsemblProtists:PFL1915w:mRNA GeneID:811435
KEGG:pfa:PFL1915w EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN
ProtClustDB:PTZ00109 Uniprot:Q8I528
Length = 1006
Score = 149 (57.5 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 62/237 (26%), Positives = 103/237 (43%)
Query: 303 VSFVNGIATIKGGTHVD---YVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALI 359
+SFVN + T GGTHVD Y ++ L ++ +
Sbjct: 515 ISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNFVNIPGEYIREGLTAILSVKM 574
Query: 360 DNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK--QSKDLKK 417
+NP F+ QTK L S K L +K++ LLS FK Q+K L
Sbjct: 575 NNPEFEGQTKTKL----GSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAK-LSD 629
Query: 418 NDGTKTED-VRGISKLEDANLAGGRN----SEQCT---LILTEGDSAKALAMAGLSVVGR 469
+ D +R + + + G+ S+ + + + EGDSA A + R
Sbjct: 630 EEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARN---R 686
Query: 470 DRFGVFPLRGKLLNVREASSNQ-VLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLM 525
+ + PL+GK+LNV + +N+ + NSE+ ++ LGL V Y+N K+L+ +++
Sbjct: 687 EIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLN--VNYDN-KNLKNNNIL 740
Score = 90 (36.7 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 20/77 (25%), Positives = 46/77 (59%)
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYV 135
V GL++I EI+ N+ D + + + + +KVVI ++ D +++ ++G G+P ++H++
Sbjct: 150 VKGLHQILFEIIDNSVD-EYNNFECNTIKVVIHKD-DSVTIEDNGRGIPCDVHEKTKKSA 207
Query: 136 PELIFGHLLTSSNYDDN 152
E + L + + + D+
Sbjct: 208 LETVLTVLHSGAKFFDD 224
Score = 58 (25.5 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 25/107 (23%), Positives = 46/107 (42%)
Query: 145 TSSNYDDNVKKT--TGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKS-E 201
T N ++ +K + G +G G + N S+ ++ ++ + GK + E
Sbjct: 264 TKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSIEL----EKGKVTKE 319
Query: 202 PNISKCKEGDNWTKVSFKPDLAKFNMT--HLEDDVVALMKKRVVDLA 246
I+ C T++ +KPD + F + H D L+K R+ LA
Sbjct: 320 LTITNCPINKRGTQIHYKPDSSIFKSSTKHNSD----LIKNRIHQLA 362
Score = 38 (18.4 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 60 IYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRD 97
++E+ K+ + ++ + K FD+ + + DN +
Sbjct: 199 VHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNN 236
>UNIPROTKB|Q8I528 [details] [associations]
symbol:GyrB "Term=DNA gyrase subunit B;evidence=inferred
from direct assay" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0020011
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075156 GenomeReviews:AE014188_GR
HSSP:P06982 RefSeq:XP_001350789.1 ProteinModelPortal:Q8I528
IntAct:Q8I528 MINT:MINT-1670662 PRIDE:Q8I528
EnsemblProtists:PFL1915w:mRNA GeneID:811435 KEGG:pfa:PFL1915w
EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN ProtClustDB:PTZ00109
Uniprot:Q8I528
Length = 1006
Score = 149 (57.5 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 62/237 (26%), Positives = 103/237 (43%)
Query: 303 VSFVNGIATIKGGTHVD---YVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALI 359
+SFVN + T GGTHVD Y ++ L ++ +
Sbjct: 515 ISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNFVNIPGEYIREGLTAILSVKM 574
Query: 360 DNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK--QSKDLKK 417
+NP F+ QTK L S K L +K++ LLS FK Q+K L
Sbjct: 575 NNPEFEGQTKTKL----GSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAK-LSD 629
Query: 418 NDGTKTED-VRGISKLEDANLAGGRN----SEQCT---LILTEGDSAKALAMAGLSVVGR 469
+ D +R + + + G+ S+ + + + EGDSA A + R
Sbjct: 630 EEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARN---R 686
Query: 470 DRFGVFPLRGKLLNVREASSNQ-VLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLM 525
+ + PL+GK+LNV + +N+ + NSE+ ++ LGL V Y+N K+L+ +++
Sbjct: 687 EIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLN--VNYDN-KNLKNNNIL 740
Score = 90 (36.7 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 20/77 (25%), Positives = 46/77 (59%)
Query: 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYV 135
V GL++I EI+ N+ D + + + + +KVVI ++ D +++ ++G G+P ++H++
Sbjct: 150 VKGLHQILFEIIDNSVD-EYNNFECNTIKVVIHKD-DSVTIEDNGRGIPCDVHEKTKKSA 207
Query: 136 PELIFGHLLTSSNYDDN 152
E + L + + + D+
Sbjct: 208 LETVLTVLHSGAKFFDD 224
Score = 58 (25.5 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 25/107 (23%), Positives = 46/107 (42%)
Query: 145 TSSNYDDNVKKT--TGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKS-E 201
T N ++ +K + G +G G + N S+ ++ ++ + GK + E
Sbjct: 264 TKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSIEL----EKGKVTKE 319
Query: 202 PNISKCKEGDNWTKVSFKPDLAKFNMT--HLEDDVVALMKKRVVDLA 246
I+ C T++ +KPD + F + H D L+K R+ LA
Sbjct: 320 LTITNCPINKRGTQIHYKPDSSIFKSSTKHNSD----LIKNRIHQLA 362
Score = 38 (18.4 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 60 IYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRD 97
++E+ K+ + ++ + K FD+ + + DN +
Sbjct: 199 VHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNN 236
>UNIPROTKB|Q9RT53 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
EMBL:AE000513 GenomeReviews:AE000513_GR GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 PIR:E75338 RefSeq:NP_295636.1
ProteinModelPortal:Q9RT53 GeneID:1798351 KEGG:dra:DR_1913
PATRIC:21631472 BioCyc:DRAD243230:GH46-2282-MONOMER Uniprot:Q9RT53
Length = 812
Score = 195 (73.7 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 61/222 (27%), Positives = 103/222 (46%)
Query: 706 VNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSE-HSA 763
V I ++M + R++P + DG+KP QR+I++ + K A+ + V E
Sbjct: 13 VKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSASVVGEVMKR 72
Query: 764 YH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITR 822
YH HG+ S+ ++ + Q + + L+ P G FG+ + G AA+ RY R++ +
Sbjct: 73 YHPHGDSSIYDAMVRLGQWW--NMRYTLVDPQGNFGSMD--GDMAAAMRYTEARMTKVAE 128
Query: 823 -FLFPXXXXXXXXYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVA 881
L N D EPT +P +L+NG+ GI G ++ IP +N +I
Sbjct: 129 EILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNLTEISN 188
Query: 882 NVRRLLNGEM--MEPMHPWYRG--F--GGTIEKTASKEAGVT 917
+ L++ ++ M +G F GG I K +EA T
Sbjct: 189 GLLALIDNPAITLDEMMTHVQGPDFPTGGRIAKVGIREAYAT 230
Score = 49 (22.3 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 1133 SMAIGTLTLEKVQGLLADRDKLNEEVDDLRK 1163
+ AI + L+++ GL +R+KL E D+L+K
Sbjct: 418 AQAILDMRLQRLVGL--EREKLQGEYDELQK 446
>TIGR_CMR|SO_2411 [details] [associations]
symbol:SO_2411 "DNA gyrase, A subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_718001.1
ProteinModelPortal:Q8EEH1 SMR:Q8EEH1 GeneID:1170127
KEGG:son:SO_2411 PATRIC:23524439 Uniprot:Q8EEH1
Length = 919
Score = 192 (72.6 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 700 IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFC--SFKRNFIKE-AKVAQFS 755
I D + + ++M+ + R++P + DGLKP R++LF K ++ K K A+
Sbjct: 11 INIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVV 70
Query: 756 GYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIF 814
G V YH HG+ ++ TI+ MAQ F S L+ G FG+ + G AA+ RY
Sbjct: 71 GDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYTLVDGQGNFGSVD--GDSAAAMRYTE 124
Query: 815 TRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPN 873
R+ + L Y+ N DG + P +P +L+NGS GI G ++ IP
Sbjct: 125 IRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPP 184
Query: 874 YNPRDIVANVRRLL 887
+N ++V L+
Sbjct: 185 HNLTEVVKGCLALI 198
>UNIPROTKB|Q5NBJ3 [details] [associations]
symbol:GYRB "DNA gyrase subunit B,
chloroplastic/mitochondrial" species:39947 "Oryza sativa Japonica
Group" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF EMBL:AP001073 EMBL:AP000969
EMBL:AK102391 RefSeq:NP_001042691.1 UniGene:Os.37563
ProteinModelPortal:Q5NBJ3 STRING:Q5NBJ3 PRIDE:Q5NBJ3 GeneID:4326261
KEGG:dosa:Os01t0268300-01 KEGG:osa:4326261 Gramene:Q5NBJ3
Uniprot:Q5NBJ3
Length = 729
Score = 170 (64.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 100/396 (25%), Positives = 165/396 (41%)
Query: 160 RNGY--GAKLTNIFSTEFIIETAD--GKRLKKY--KQVFTNNMGKKSEPNISKCKEGDNW 213
R Y G +T + S E++ G R++ + K +FT M + +E
Sbjct: 227 RQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRE---- 282
Query: 214 TKVSF-KPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVD 272
++F P+L +T EDD+ ++ AG L + VK LN + KS + +
Sbjct: 283 --LAFLNPELT-IALTKEEDDLQ--VQHNEYCYAGGLVEYVKW-LNTDK---KSLHDPI- 332
Query: 273 MYPKSVTRFHERVNERWEICVTLSEGQFQQV-SFVNGIATIKGGTHVDYVANQXXXXXXX 331
+ K + V+ +W C S+ V + N I TI GGTH+D +
Sbjct: 333 AFRKEMDGITVDVSLQW--C---SDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINN 387
Query: 332 XXXXXXXXXXXXXXXXXXX----LWVFVNALIDNPAFDSQTKETL---TLR-------QS 377
+ + + NP F+ QTK L +R Q
Sbjct: 388 FAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQE 447
Query: 378 SFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGT-KTEDVRGISKLEDAN 436
+ EL + L + +KS + L + K++++L + K+ + G KL D
Sbjct: 448 NLTEYLELHPDVLDSILSKS--LNALKAALAAKRARELVRTKSVLKSSSLPG--KLADC- 502
Query: 437 LAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR-F-GVFPLRGKLLNVREASSNQVLN 494
+ E+ + + EGDSA G + GRDR F + PLRGK+LN+ +
Sbjct: 503 --ASSDPEESEIFIVEGDSA-----GGSAKQGRDRKFQAILPLRGKILNIERRDEAALYK 555
Query: 495 NSEIGNIKKILGLK-QGVEYNNVKSLRYGHLMIMTD 529
N EI N+ LGL +G ++N ++LRY ++I+TD
Sbjct: 556 NEEIQNLIVALGLGVKGEDFNK-EALRYHKIVILTD 590
Score = 73 (30.8 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 32/130 (24%), Positives = 56/130 (43%)
Query: 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF-YSMPDYEAWK 617
D DG+HI+ LL+ F + +L V + P+ K + GK + Y D +
Sbjct: 592 DVDGAHIRTLLLTFFFRYQKALFDEGCIYVG-VPPLYKV--ERGKQAHYCYDDADLKELV 648
Query: 618 ESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHK-KDFVWEDDQDGEAIELAFSKKK 676
+ NAS + I+ +KGLG + E + K ED + + + +
Sbjct: 649 NTFPTNAS-YHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTR 707
Query: 677 IEARKKWLLQ 686
++ RK+ L+Q
Sbjct: 708 VDVRKQ-LIQ 716
>TIGR_CMR|ECH_0858 [details] [associations]
symbol:ECH_0858 "DNA gyrase, A subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_507653.1 ProteinModelPortal:Q2GFY0 STRING:Q2GFY0
GeneID:3927477 KEGG:ech:ECH_0858 PATRIC:20577126
BioCyc:ECHA205920:GJNR-861-MONOMER Uniprot:Q2GFY0
Length = 898
Score = 200 (75.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 93/344 (27%), Positives = 155/344 (45%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFI--KE-AKVAQFSGYVSEHSAYH-HGEQSLAS 773
+ R+IP + DGLKP R+IL+ +K + K K A+ G V YH H + ++
Sbjct: 29 VSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAARVVGDVM--GKYHPHADAAIYD 86
Query: 774 TILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXX 833
+++ MAQDF S + L+ G FG+ + G AS RY RL+ FL
Sbjct: 87 SLVRMAQDF--SLLLPLIDSQGNFGSID--GDPPASMRYTEARLAKAAHFLLNDIDEDTV 142
Query: 834 XYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV-ANVRRLLNGEM 891
+ N D ++EP P +LVNG+ G+ G S+ IP++N +++ A + + N E+
Sbjct: 143 DFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNLGEVIDACIAYIDNPEI 202
Query: 892 -MEPMHPWYRG--F--GGTIEKTAS-KEAGVTYTVTGII------EEV--NETTLRIKEL 937
+ + RG F GGTI A + A +T T II E++ + + I E+
Sbjct: 203 TFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIIQGKTHLEDLPSGKQAIIIDEI 262
Query: 938 PIRRWTQDYREFLESIIDQND-SFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKF 996
P + E + +I + I R S+ + + L ++ + +L
Sbjct: 263 PYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIELKKQVSHQVILNQILGLT 322
Query: 997 KLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKR 1040
L T+ S + + L ++K K P+ I+ F R E +R
Sbjct: 323 PLRTSFSINTLVLDNNKP--KVMSLPD-IISTFVEYRKEVLTRR 363
Score = 43 (20.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 23/98 (23%), Positives = 40/98 (40%)
Query: 1147 LLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDA 1206
LL +++ L + + D K L V +D E D D +E+ M + +G
Sbjct: 481 LLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKED-MVVTVTMSG-- 537
Query: 1207 GPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKV 1244
KRA + + K+ R +A+ E D +T +
Sbjct: 538 ----YIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNL 571
>TIGR_CMR|SPO_2051 [details] [associations]
symbol:SPO_2051 "DNA gyrase, A subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:YP_167281.1 ProteinModelPortal:Q5LRS4
SMR:Q5LRS4 GeneID:3193149 KEGG:sil:SPO2051 PATRIC:23377441
Uniprot:Q5LRS4
Length = 891
Score = 190 (71.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/166 (31%), Positives = 83/166 (50%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSE-HSAYH-HGEQSLASTI 775
+ R+IP + DGLKP R+IL+ + + + + V + YH HG+ ++ +
Sbjct: 24 VSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPVGDVMGKYHPHGDSAIYDAL 83
Query: 776 LGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXY 835
+ MAQDF S ++ LL G FG+ + G + A+ RY R+ FL +
Sbjct: 84 VRMAQDF--SMSLPLLDGQGNFGSMD--GDNPAAMRYTEVRMDKPAAFLLSDIDKETVDF 139
Query: 836 L-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880
N DG+ EPT P +LVNG+ GI G ++ IP +N ++V
Sbjct: 140 QDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVV 185
>UNIPROTKB|Q45066 [details] [associations]
symbol:parC "DNA topoisomerase 4 subunit A" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR005741
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
TIGRFAMs:TIGR01063 EMBL:Z73234 EMBL:AF024713 PIR:B69637
RefSeq:NP_389692.2 ProteinModelPortal:Q45066 SMR:Q45066
PRIDE:Q45066 EnsemblBacteria:EBBACT00000001040 GeneID:937107
KEGG:bsu:BSU18100 PATRIC:18975451 GenoList:BSU18100
HOGENOM:HOG000076279 KO:K02621 ProtClustDB:PRK05561
BioCyc:BSUB:BSU18100-MONOMER ChEMBL:CHEMBL3487 HAMAP:MF_00937
TIGRFAMs:TIGR01061 Uniprot:Q45066
Length = 806
Score = 187 (70.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 58/176 (32%), Positives = 93/176 (52%)
Query: 720 RSIPSMVDGLKPGQRKILFC------SFKRNFIKEAKVAQFSGYVSEHSAYH-HGEQSLA 772
R++P DGLKP QR+IL+ +F +NF K AK G V + YH HG+ S+
Sbjct: 31 RALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTV---GNVIGN--YHPHGDSSVY 85
Query: 773 STILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXX 832
++ M+QD+ N+ L++ +G G+ + G A+ RY RLSPI L
Sbjct: 86 EAMVRMSQDWK-VRNV-LIEMHGNNGSID--GDPPAAMRYTEARLSPIASELLRDIDKNT 141
Query: 833 XXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV-ANVRRL 886
++ N D EP + P +LVNGS GI G+++ IP ++ +++ A ++R+
Sbjct: 142 VEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197
Score = 54 (24.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 952 SIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTS 1005
+++ + ++G DD V E+ +S++ Q G +K+ L+ TS
Sbjct: 674 NVVGARAAGVKGINLKEDDFVVSGEILQQSDSIVLFTQRGAVKRMSLSEFEKTS 727
>UNIPROTKB|Q8FA30 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P06982 RefSeq:NP_710186.1
ProteinModelPortal:Q8FA30 GeneID:1149348 KEGG:lil:LA_0005
PATRIC:22380849 BioCyc:LINT189518:GJBB-5-MONOMER Uniprot:Q8FA30
Length = 639
Score = 170 (64.9 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 81/289 (28%), Positives = 125/289 (43%)
Query: 264 VKSFAEYVD--MYPK-SVTRFHERVNERW-EICVTLSEGQFQQV-SFVNGIATIKGGTHV 318
+ SF E+++ +P V F ++ EI + SE + + F N I GGTH+
Sbjct: 227 IVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 286
Query: 319 D-----YVANQXXXXXXXXXXXXXXXXXXXXXXXXXXLWVFVNALIDNPAFDSQTKETLT 373
+ L ++ I P F+SQTKE L
Sbjct: 287 EGFRAALTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 346
Query: 374 LRQSSFGSKCELSEE----FLKK---VTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDV 426
+ G LS E F ++ +T K I+E + A +++ K D T+ + V
Sbjct: 347 NAEIK-GIMQTLSSEGLTLFFEENPNITKK--ILEKCILSAKAREAAR-KARDLTRRKTV 402
Query: 427 R---GI-SKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRF--GVFPLRGK 480
G+ KL D + +SE L L EGDSA G + GRDR + PL+GK
Sbjct: 403 LEGGGLPGKLADCSEKDPAHSE---LYLVEGDSA-----GGSAKQGRDRNTQAILPLKGK 454
Query: 481 LLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTD 529
+LNV +A +++L++ EI + LG G + N+ +RY +MIMTD
Sbjct: 455 ILNVEKARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIMIMTD 503
Score = 161 (61.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 75/322 (23%), Positives = 131/322 (40%)
Query: 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPE 137
GL+K+ E++ N+ D + +K+ I ++ ++ V ++G G+PV+IH ++ + E
Sbjct: 37 GLHKMVYEVVDNSVDEAMAGHCTE-IKISILPDN-IVEVKDNGRGIPVDIHPDKKISTIE 94
Query: 138 LIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMG 197
++ L ++++ K +GG +G G + N S E++ E ++ K Y Q +
Sbjct: 95 VVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALS-EYL-EVEVHQKGKVYTQKY----- 147
Query: 198 KKSEPNISKCKEGDN---WTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVK 254
+K P S +GD+ T V FKPD F + DV++ R +LA L K +
Sbjct: 148 EKGVPVSSVQIQGDSSERGTIVRFKPDATIFTTVDFQFDVLSA---RFRELA-FLNKGLV 203
Query: 255 VELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERW------------------EICVTLS 296
+ + HR ++ + + F E +NE EI + S
Sbjct: 204 LVVEDHRRGKENILRNEFQFSGGIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYS 263
Query: 297 EGQFQQV-SFVNGIATIKGGTHVD-----YVANQXXXXXXXXXXXXXXXXXXXXXXXXXX 350
E + + F N I GGTH++
Sbjct: 264 ETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLNDFLKKDSTLSKKHPTGLSGEDVKEG 323
Query: 351 LWVFVNALIDNPAFDSQTKETL 372
L ++ I P F+SQTKE L
Sbjct: 324 LTAVISIKIPQPQFNSQTKEKL 345
Score = 73 (30.8 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSF-YSMPDY 613
M D DGSHI+ LL+ F + +++ +L P+ K+GK ++ YS +
Sbjct: 501 MTDADIDGSHIRTLLLTFFFRYMRPVIE-RGYLYVAQPPLYLI--KHGKNSTYVYSDKEK 557
Query: 614 EAWKESLGGNASSWSIKYYKGLG 636
E +++G A I+ YKGLG
Sbjct: 558 EELLKNIG--AEKVVIQRYKGLG 578
Score = 40 (19.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 37 LEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGL-YKIFDEILVNAADNKQ 95
LE + RP YIG+ ++ +YE ++ + + I + +V DN +
Sbjct: 19 LEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKDNGR 78
Query: 96 RDP 98
P
Sbjct: 79 GIP 81
>TIGR_CMR|CJE_1171 [details] [associations]
symbol:CJE_1171 "DNA gyrase, A subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_179162.1 ProteinModelPortal:Q5HU73 SMR:Q5HU73
STRING:Q5HU73 GeneID:3231680 KEGG:cjr:CJE1171 PATRIC:20044135
BioCyc:CJEJ195099:GJC0-1198-MONOMER Uniprot:Q5HU73
Length = 862
Score = 199 (75.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 85/319 (26%), Positives = 146/319 (45%)
Query: 713 FSMADL-QRSIPSMVDGLKPGQRKILFC------SFKRNFIKEAKVAQFSGYVSEHSAYH 765
+SM+ + R++P DGLKP R+IL+ + +F+K A++ G V YH
Sbjct: 27 YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV---GAVI--GRYH 81
Query: 766 -HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFL 824
HG+ ++ ++ MAQDF S + G FG+ + G AA+ RY ++S ++ L
Sbjct: 82 PHGDTAVYDALVRMAQDF--SMRYPSITGQGNFGSID--GDSAAAMRYTEAKMSKLSHEL 137
Query: 825 FPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANV 883
++ N DG + EP +P +L+NGS GI G ++ IP ++ +++ +
Sbjct: 138 LKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGL 197
Query: 884 RRLLNGE--MMEPMHPWYRG---------FG--GTIEKTASKEAGVTYTV-TGIIEEVNE 929
LL+ + +E + + +G +G G IE + V T I ++ N+
Sbjct: 198 LYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNK 257
Query: 930 TTLRIKELPIRRWTQDYREFLESIIDQ-NDSFIRGFRQYSDDTT---VDFEVFLSEESMM 985
+ I ELP + T R +E I + + I G + D++ + + L E+M
Sbjct: 258 DVIVIDELPYQ--TNKAR-LIEQIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMS 314
Query: 986 RTKQEGLLKKFKLTTTIST 1004
L FK TT ST
Sbjct: 315 EIVLNNL---FKSTTMEST 330
Score = 41 (19.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 1304 QVPAKKKEPSKRTAAQKKVVTVETSD 1329
+VP+K+ E KR K VT D
Sbjct: 518 RVPSKQYEKQKRGGKGKLAVTTYDDD 543
>TIGR_CMR|CHY_2704 [details] [associations]
symbol:CHY_2704 "DNA gyrase, A subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
HOGENOM:HOG000076279 RefSeq:YP_361486.1 ProteinModelPortal:Q3A8P8
SMR:Q3A8P8 STRING:Q3A8P8 GeneID:3728127 KEGG:chy:CHY_2704
PATRIC:21278429 BioCyc:CHYD246194:GJCN-2702-MONOMER Uniprot:Q3A8P8
Length = 812
Score = 202 (76.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 80/334 (23%), Positives = 152/334 (45%)
Query: 700 IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 758
+K + + + ++M+ + R++P + DGLKP R+IL+ + + + V
Sbjct: 10 VKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKSAHIV 69
Query: 759 SEH-SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTR 816
E +H HG+ ++ ++ MAQDF S L+ +G FG+ + G AA+ RY R
Sbjct: 70 GEVLGKFHPHGDVAVYDAMVRMAQDF--STRYPLIDGHGNFGSVD--GDSAAAMRYTEAR 125
Query: 817 LSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYN 875
++ IT + ++ N D EP IP +LVNGS GI G ++ IP +N
Sbjct: 126 MAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185
Query: 876 PRDIVANVRRLLN------GEMMEPMH-PWYRGFGGTIEKTASKEAGVT----YTVTGI- 923
R+++ V ++++ GE+M+ + P + G + + ++A T V +
Sbjct: 186 LREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAVT 245
Query: 924 -IEEVN--ETTLRIKELPIR-RWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFL 979
E+++ +T + + ELP + + + E + D+ I R SD + + L
Sbjct: 246 TFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIEL 305
Query: 980 SEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSK 1013
++ + L K +L T + L D++
Sbjct: 306 KRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQ 339
Score = 37 (18.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 987 TKQEGLLKKFKLT 999
T +EGL+ +F LT
Sbjct: 403 TAREGLMSRFGLT 415
>TIGR_CMR|CBU_1866 [details] [associations]
symbol:CBU_1866 "DNA topoisomerase IV, A subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR005742 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 TIGRFAMs:TIGR01062 HSSP:P09097
RefSeq:NP_820843.1 ProteinModelPortal:Q83AL7 PRIDE:Q83AL7
GeneID:1209779 KEGG:cbu:CBU_1866 PATRIC:17932465 OMA:RIDFEAL
BioCyc:CBUR227377:GJ7S-1842-MONOMER Uniprot:Q83AL7
Length = 753
Score = 186 (70.5 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 57/193 (29%), Positives = 95/193 (49%)
Query: 691 NHLDQKEKYIKYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEA 749
N LD + + + S+FV K + +SM+ L R++P + DGLKP QR+I++ + A
Sbjct: 10 NALDVERQPL--SEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTA 67
Query: 750 KVAQFSGYVSEH-SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDA 807
K + + V + +H HG+ + ++ MAQ F S + G +G+ + K
Sbjct: 68 KYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPF--SFRYPFVDGQGNWGSADDP-KSF 124
Query: 808 ASARYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTG 866
A+ RY RLS + L ++ N DG EP +P VL+NG+ GI G
Sbjct: 125 AAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVG 184
Query: 867 WSSYIPNYNPRDI 879
++ IP +N ++
Sbjct: 185 MATDIPPHNLTEV 197
>UNIPROTKB|Q89L52 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 EMBL:BA000040 GenomeReviews:BA000040_GR
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_771336.2
ProteinModelPortal:Q89L52 GeneID:1052360 KEGG:bja:bll4696
PATRIC:21193036 BioCyc:BJAP224911:GJEJ-4729-MONOMER Uniprot:Q89L52
Length = 884
Score = 186 (70.5 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 52/179 (29%), Positives = 89/179 (49%)
Query: 706 VNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-SA 763
+ K + ++M+ + R++P DGLKP R+IL+ ++ + K + + V +
Sbjct: 1 MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60
Query: 764 YH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITR 822
YH HG+QS+ ++ MAQDF S + L+ G FG+ + G A+ RY RL+
Sbjct: 61 YHPHGDQSIYDAMVRMAQDF--SMRVPLIDGQGNFGSVD--GDPPAAYRYTEARLTKAAL 116
Query: 823 FLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880
L + N D + EP+ P +LVNG+ GI G ++ IP +N +++
Sbjct: 117 ALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVI 175
>UNIPROTKB|Q9KSJ8 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009330 GO:GO:0006265 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 Gene3D:1.10.268.10
HSSP:P09097 PIR:E82221 RefSeq:NP_230903.1 ProteinModelPortal:Q9KSJ8
SMR:Q9KSJ8 DNASU:2614695 GeneID:2614695 KEGG:vch:VC1258
PATRIC:20081596 Uniprot:Q9KSJ8
Length = 894
Score = 186 (70.5 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 59/197 (29%), Positives = 96/197 (48%)
Query: 700 IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFC-SFKRNFIKEA--KVAQFS 755
+ D + + ++M+ + R++P + DGLKP R++LF + N +A K A+
Sbjct: 11 VNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70
Query: 756 GYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIF 814
G V YH HG+ ++ TI+ MAQ F S L+ G FG+ + G AA+ RY
Sbjct: 71 GDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTE 124
Query: 815 TRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPN 873
R+S I L Y+ N DG + P IP +L+NG+ GI G ++ IP
Sbjct: 125 VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 184
Query: 874 YNPRDIVANVRRLLNGE 890
+N +++ ++ E
Sbjct: 185 HNLGEVIDGCLAYIDNE 201
>TIGR_CMR|VC_1258 [details] [associations]
symbol:VC_1258 "DNA gyrase, subunit A" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009330 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 PIR:E82221 RefSeq:NP_230903.1
ProteinModelPortal:Q9KSJ8 SMR:Q9KSJ8 DNASU:2614695 GeneID:2614695
KEGG:vch:VC1258 PATRIC:20081596 Uniprot:Q9KSJ8
Length = 894
Score = 186 (70.5 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 59/197 (29%), Positives = 96/197 (48%)
Query: 700 IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFC-SFKRNFIKEA--KVAQFS 755
+ D + + ++M+ + R++P + DGLKP R++LF + N +A K A+
Sbjct: 11 VNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70
Query: 756 GYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIF 814
G V YH HG+ ++ TI+ MAQ F S L+ G FG+ + G AA+ RY
Sbjct: 71 GDVI--GKYHPHGDSAVYDTIVRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTE 124
Query: 815 TRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPN 873
R+S I L Y+ N DG + P IP +L+NG+ GI G ++ IP
Sbjct: 125 VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 184
Query: 874 YNPRDIVANVRRLLNGE 890
+N +++ ++ E
Sbjct: 185 HNLGEVIDGCLAYIDNE 201
>TIGR_CMR|DET_1630 [details] [associations]
symbol:DET_1630 "DNA gyrase, A subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_182324.1 ProteinModelPortal:Q3Z625 SMR:Q3Z625
STRING:Q3Z625 GeneID:3229170 KEGG:det:DET1630 PATRIC:21610274
BioCyc:DETH243164:GJNF-1631-MONOMER Uniprot:Q3Z625
Length = 809
Score = 183 (69.5 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 87/348 (25%), Positives = 148/348 (42%)
Query: 718 LQRSIPSMVDGLKPGQRKILFC----SFKRNFIKEAKVAQFSGYVSEHSAYH-HGEQSLA 772
+ R++P + DGLKP QR+IL+ K N K A+ G V YH HG+ S+
Sbjct: 28 VSRALPDVRDGLKPVQRRILYAMNDLGMKHN-TPYKKSARIVGEVL--GKYHPHGDSSVY 84
Query: 773 STILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXX 832
++ MAQ F S L+ G FG+ + A+ RY RL+ I L
Sbjct: 85 DAMVRMAQPF--SYRYPLVDGQGNFGSVDND--PPAAMRYTEARLAQIAEQLLTDIDKNT 140
Query: 833 XXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL-NGE 890
++ N D EPT IP +L+NGS GI G ++ IP +N ++ + L+ N +
Sbjct: 141 VDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAELCQAICYLIDNPD 200
Query: 891 M-MEPMHPWYRG--F--GGTIEKT-------ASKEAGVTYTVTGIIEEV-NETTLRIKEL 937
++ + + G F GGTI T A+ + + I EV N + + E+
Sbjct: 201 CGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGEVDNRKAIFVTEI 260
Query: 938 PIR-RWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKF 996
P + + + E + D+ I R SD + + L ++ + L K
Sbjct: 261 PYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIELKRDAEPQQVLNSLYKHT 320
Query: 997 KLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQ 1044
+ T+ + + L D + + +++L+ F R +R + +
Sbjct: 321 NMRTSFFVNMLALVDGQPQVLSL---KEVLKNFIDFRHLIITRRSQFE 365
>UNIPROTKB|O50510 [details] [associations]
symbol:O50510 "DNA gyrase-like protein" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
GenomeReviews:AL645882_GR Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 GO:GO:0006265 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
ProtClustDB:PRK05561 HSSP:P09097 EMBL:AL939125 PIR:T35872
RefSeq:NP_629959.1 ProteinModelPortal:O50510 GeneID:1101278
KEGG:sco:SCO5836 PATRIC:23741572 OMA:YSRALPD Uniprot:O50510
Length = 818
Score = 182 (69.1 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 50/171 (29%), Positives = 81/171 (47%)
Query: 720 RSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSE-HSAYH-HGEQSLASTILG 777
R++P DGLKP R+I++ + E + + V E H HG+ S+ ++
Sbjct: 43 RALPDARDGLKPVHRRIVYQMNEMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVR 102
Query: 778 MAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYL- 836
MAQ F S + L+ +G FG+ AA RY R++ + +
Sbjct: 103 MAQSF--SMRVPLVDGHGNFGSLGNDDPPAAM-RYTECRMAEAAGLMTESIDEDTVDFAP 159
Query: 837 NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL 887
N DGQ+ EP P +LVNG+ GI G ++ +P +N R+++A R L+
Sbjct: 160 NYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMPPHNLREVIAAARHLI 210
Score = 51 (23.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 1123 VQSIDYDYLLSMAIGTLT-LEKVQGLLADRDKLNEEVDDLRK 1163
+ + Y+L + LT ++++ L +++D+LN E+++L +
Sbjct: 428 LSDVQTQYILDTPLRRLTKYDRIE-LESEKDRLNAEIEELTR 468
Score = 39 (18.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 931 TLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQE 990
T I + P+RR T+ R LES D+ ++ I + D + + +S E K+
Sbjct: 433 TQYILDTPLRRLTKYDRIELESEKDRLNAEIEELTRILD-SDAELRKLVSAELAAVAKKF 491
Query: 991 GLLKKFKLTTTISTS 1005
G ++ TT + +S
Sbjct: 492 GTDRR---TTLLESS 503
>UNIPROTKB|P0AFI2 [details] [associations]
symbol:parC species:83333 "Escherichia coli K-12"
[GO:0007059 "chromosome segregation" evidence=IDA;IMP] [GO:0003916
"DNA topoisomerase activity" evidence=IEA;IDA] [GO:0019897
"extrinsic to plasma membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IBA;IDA] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0030541 "plasmid partitioning"
evidence=IDA] [GO:0007062 "sister chromatid cohesion" evidence=IMP]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0016853 "isomerase activity"
evidence=IEA] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0019897 EMBL:U28377
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009330 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 EMBL:M63491 eggNOG:COG0188
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 DrugBank:DB00817
GO:GO:0030541 KO:K02621 ProtClustDB:PRK05561 EMBL:M58408
EMBL:L22025 PIR:A65089 RefSeq:NP_417491.1 RefSeq:YP_491211.1
PDB:1ZVT PDB:1ZVU PDBsum:1ZVT PDBsum:1ZVU ProteinModelPortal:P0AFI2
SMR:P0AFI2 DIP:DIP-36030N IntAct:P0AFI2 MINT:MINT-1227290
PaxDb:P0AFI2 PRIDE:P0AFI2 EnsemblBacteria:EBESCT00000000502
EnsemblBacteria:EBESCT00000015620 GeneID:12933371 GeneID:947499
KEGG:ecj:Y75_p2945 KEGG:eco:b3019 PATRIC:32121452 EchoBASE:EB0680
EcoGene:EG10686 HOGENOM:HOG000076277 OMA:YKAGDSY
BioCyc:EcoCyc:EG10686-MONOMER BioCyc:ECOL316407:JW2987-MONOMER
BindingDB:P0AFI2 ChEMBL:CHEMBL1895 EvolutionaryTrace:P0AFI2
Genevestigator:P0AFI2 HAMAP:MF_00936 TIGRFAMs:TIGR01062
Uniprot:P0AFI2
Length = 752
Score = 180 (68.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 54/190 (28%), Positives = 91/190 (47%)
Query: 694 DQKEKYIKYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVA 752
D E+ + +F + +SM + R++P + DGLKP QR+I++ + AK
Sbjct: 3 DMAER-LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61
Query: 753 QFSGYVSEH-SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASA 810
+ + V + YH HG+ + ++ MAQ F S L+ G +G + K A+
Sbjct: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDP-KSFAAM 118
Query: 811 RYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSS 869
RY +RLS + L ++ N DG EP +P +L+NG+ GI G ++
Sbjct: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178
Query: 870 YIPNYNPRDI 879
IP +N R++
Sbjct: 179 DIPPHNLREV 188
>UNIPROTKB|Q7NC97 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P09097 RefSeq:NP_926028.1
ProteinModelPortal:Q7NC97 SMR:Q7NC97 GeneID:2601483
KEGG:gvi:gvip425 PATRIC:22045635
BioCyc:GVIO251221:GH9A-3132-MONOMER Uniprot:Q7NC97
Length = 840
Score = 188 (71.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 55/172 (31%), Positives = 85/172 (49%)
Query: 720 RSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-SAYH-HGEQSLASTILG 777
R++P DGLKP R+ILF + + + + V + YH HG+ ++ ++
Sbjct: 28 RALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCARVVGDVLGKYHPHGDSAVYDALVR 87
Query: 778 MAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITR-FLFPXXXXXXXXYL 836
+AQDF S L+ +G FG+ + A+ RY RL+P+TR L +
Sbjct: 88 LAQDF--STRYLLIDGHGNFGSVDND--PPAAMRYTECRLTPLTRDTLLADLEAETVDFS 143
Query: 837 -NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL 887
N DG Q EPT +P +L+NGS GI G ++ IP + ++V V LL
Sbjct: 144 DNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQLGELVDGVTALL 195
Score = 43 (20.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 1148 LADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAG 1207
+A R + +EE LR + VK ++ + DEL D + E+R + + NG + G
Sbjct: 668 MAIRFRADEE--QLRPLGRTARGVKSMEL--RKGDELVSMDILSCEQRERAEANG--ECG 721
Query: 1208 PKIVAKRA 1215
P ++ A
Sbjct: 722 PWVLVVTA 729
>TIGR_CMR|BA_3656 [details] [associations]
symbol:BA_3656 "DNA topoisomerase IV, A subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR002205 InterPro:IPR005741
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 HOGENOM:HOG000076279 KO:K02621
ProtClustDB:PRK05561 TIGRFAMs:TIGR01061 HSSP:P09097
RefSeq:NP_845921.1 RefSeq:YP_020291.1 RefSeq:YP_029648.1
ProteinModelPortal:Q81Y99 SMR:Q81Y99 DNASU:1085874
EnsemblBacteria:EBBACT00000011931 EnsemblBacteria:EBBACT00000015898
EnsemblBacteria:EBBACT00000022636 GeneID:1085874 GeneID:2818280
GeneID:2851102 KEGG:ban:BA_3656 KEGG:bar:GBAA_3656 KEGG:bat:BAS3391
OMA:SYIAHRK BioCyc:BANT260799:GJAJ-3453-MONOMER
BioCyc:BANT261594:GJ7F-3562-MONOMER Uniprot:Q81Y99
Length = 807
Score = 177 (67.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 59/201 (29%), Positives = 100/201 (49%)
Query: 695 QKEKY--IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFCSFKRNFIKEA-- 749
Q EK+ + D + +S +Q R++P DGLKP QR+IL+ + + +
Sbjct: 2 QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61
Query: 750 -KVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDA 807
K A+ G V + YH HG+ S+ ++ ++Q + N+ L++ +G G+ + G A
Sbjct: 62 RKSAKTVGNVIGN--YHPHGDSSVYEAMVRLSQTWK-VRNV-LVEMHGNNGSVD--GDPA 115
Query: 808 ASARYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTG 866
A+ RY RLSPI L ++ N D EP P +LVNGS GI G
Sbjct: 116 AAMRYTEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAG 175
Query: 867 WSSYIPNYNPRDIV-ANVRRL 886
+++ IP ++ +++ A + R+
Sbjct: 176 YATEIPPHHLGEVIDATMMRI 196
Score = 50 (22.7 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 21/88 (23%), Positives = 44/88 (50%)
Query: 913 EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESII--DQNDSFIRGFRQYSDD 970
+ T TV + N L + E+P RW +D + + +I+ D++++ I + +
Sbjct: 543 DTNTTETVLLFTNKGNYIYLPVYEMPDIRW-KDLGQHVANIVSLDRDETIIWATVVPNFE 601
Query: 971 TTVDFEVFLSEESMMRTKQEGLLKKFKL 998
F VF+++ M++ K E L ++K+
Sbjct: 602 EEKRFIVFVTKNGMIK-KTE--LNQYKV 626
Score = 41 (19.5 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 1122 GVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLR 1162
G + ++S+ + LT + L + D+LN+++ +L+
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQ 452
Score = 37 (18.1 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1173 DLDALDMQLDELDK 1186
D+ AL + DEL+K
Sbjct: 433 DITALQQEADELNK 446
>UNIPROTKB|A6V2Q7 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 Gene3D:1.10.268.10 RefSeq:YP_001347342.1
ProteinModelPortal:A6V2Q7 SMR:A6V2Q7 STRING:A6V2Q7 GeneID:5355666
KEGG:pap:PSPA7_1961 PATRIC:19825727
BioCyc:PAER381754:GHMY-2022-MONOMER Uniprot:A6V2Q7
Length = 921
Score = 175 (66.7 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 58/196 (29%), Positives = 99/196 (50%)
Query: 700 IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFCSFK--RNFIKE-AKVAQFS 755
+ D + + + ++M+ + R++P DGLKP R++L+ + ++ K K A+
Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70
Query: 756 GYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIF 814
G V YH HG+ ++ TI+ MAQ F S L+ G FG+ + G +AA+ RY
Sbjct: 71 GDVI--GKYHPHGDIAVYDTIVRMAQPF--SLRYMLVDGQGNFGSVD--GDNAAAMRYTE 124
Query: 815 TRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPI-IPTVLVNGSEGIGTGWSSYIP 872
R++ + L ++ N DG + P MP IP +LVNGS GI G ++ IP
Sbjct: 125 VRMAKLAHELLADLEKETVDWVPNYDGTEQIPA-VMPTKIPNLLVNGSSGIAVGMATNIP 183
Query: 873 NYNPRDIVANVRRLLN 888
+N +++ L++
Sbjct: 184 PHNLGEVIDGCLALMD 199
>TAIR|locus:2075765 [details] [associations]
symbol:GYRA "DNA GYRASE A" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=ISS] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA;IGI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IBA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA;IBA]
[GO:0006265 "DNA topological change" evidence=IEA;IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=IBA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009295 "nucleoid" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005739 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0006355 GO:GO:0006351 EMBL:AC011560
EMBL:AC011708 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009330 GO:GO:0009295 GO:GO:0016592 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 IPI:IPI00544444
RefSeq:NP_187680.2 UniGene:At.39883 ProteinModelPortal:Q9CAF6
SMR:Q9CAF6 IntAct:Q9CAF6 STRING:Q9CAF6 PaxDb:Q9CAF6 PRIDE:Q9CAF6
EnsemblPlants:AT3G10690.1 GeneID:820238 KEGG:ath:AT3G10690
GeneFarm:2654 TAIR:At3g10690 InParanoid:Q9CAF6 OMA:IAQEDVV
PhylomeDB:Q9CAF6 ProtClustDB:CLSN2690844 Genevestigator:Q9CAF6
GermOnline:AT3G10690 TIGRFAMs:TIGR01063 Uniprot:Q9CAF6
Length = 950
Score = 171 (65.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 50/167 (29%), Positives = 82/167 (49%)
Query: 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-SAYH-HGEQSLASTI 775
L R++P + DGLKP R+ILF + + + + V E +H HG+ ++ ++
Sbjct: 123 LGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSL 182
Query: 776 LGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITR-FLFPXXXXXXXX 834
+ MAQ F S L+Q +G FG+ + A+ RY RL P+ L
Sbjct: 183 VRMAQSF--SLRCPLIQGHGNFGSID--ADPPAAMRYTECRLDPLAEAVLLSDLDQDTVD 238
Query: 835 YL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880
++ N D Q EP +P +L+NG+ GI G ++ IP +N ++V
Sbjct: 239 FVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELV 285
Score = 56 (24.8 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 947 REFLESIIDQNDSFIRGFRQYSDDTTV-DFEVFLSEESMMRTKQEGLLKKFKLTTTISTS 1005
+E +E + D+ S R + SD + D +V +EE +M ++G +K+ K T
Sbjct: 565 QEAIE-LKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQH 623
Query: 1006 NMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKR 1040
+ S G ++ D L H + F+ R
Sbjct: 624 RGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDR 658
Score = 37 (18.1 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 1144 VQGLLADRDKLNEEVDDLRKATPES 1168
++G++ D ++E ++ + KA+ S
Sbjct: 475 IEGIVVGLDNVDEVIELITKASSHS 499
Score = 37 (18.1 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 1392 EMLKPAESSPEKKVRKMRASPFNKKSGSMLGRA 1424
EML S + V++M+A FN + +G++
Sbjct: 600 EMLMAV--SEKGYVKRMKADTFNLQHRGTIGKS 630
>UNIPROTKB|Q74H88 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_951066.1
ProteinModelPortal:Q74H88 SMR:Q74H88 GeneID:2685711
KEGG:gsu:GSU0004 PATRIC:22022745 BioCyc:GSUL243231:GH27-4-MONOMER
Uniprot:Q74H88
Length = 857
Score = 170 (64.9 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 55/190 (28%), Positives = 89/190 (46%)
Query: 700 IKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFK--RNFIKE-AKVAQFS 755
+ D + + + ++M+ + R++P + DGLKP R+ L+ + ++ K K A+
Sbjct: 11 VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 70
Query: 756 GYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIF 814
G V YH HG+ + TI+ MAQDF S L+ G FG+ + G A+ RY
Sbjct: 71 GDVI--GKYHPHGDAAAYDTIVRMAQDF--SLRYPLVDGQGNFGSVD--GDSPAAMRYTE 124
Query: 815 TRLSPITRFLFPXXXXXXXXY-LNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPN 873
R+ + L N DG EP P +LVNGS GI G ++ IP
Sbjct: 125 IRMEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPP 184
Query: 874 YNPRDIVANV 883
+N +++ +
Sbjct: 185 HNLTEVINGI 194
Score = 55 (24.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 1139 LTLEKVQGLLADRDKLNEEVDDLRK--ATPESLWVKDLDALDMQLDELDKSDARAEEER 1195
L L ++ GL +RDK+ +E DD+ K A + + + + L + + EL + + +ER
Sbjct: 452 LRLHRLTGL--ERDKILQEYDDILKYIARLKEILASEAEILKIIVGELRELKEKFGDER 508
>TIGR_CMR|GSU_0004 [details] [associations]
symbol:GSU_0004 "DNA gyrase, A subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_951066.1
ProteinModelPortal:Q74H88 SMR:Q74H88 GeneID:2685711
KEGG:gsu:GSU0004 PATRIC:22022745 BioCyc:GSUL243231:GH27-4-MONOMER
Uniprot:Q74H88
Length = 857
Score = 170 (64.9 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 55/190 (28%), Positives = 89/190 (46%)
Query: 700 IKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFK--RNFIKE-AKVAQFS 755
+ D + + + ++M+ + R++P + DGLKP R+ L+ + ++ K K A+
Sbjct: 11 VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 70
Query: 756 GYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIF 814
G V YH HG+ + TI+ MAQDF S L+ G FG+ + G A+ RY
Sbjct: 71 GDVI--GKYHPHGDAAAYDTIVRMAQDF--SLRYPLVDGQGNFGSVD--GDSPAAMRYTE 124
Query: 815 TRLSPITRFLFPXXXXXXXXY-LNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPN 873
R+ + L N DG EP P +LVNGS GI G ++ IP
Sbjct: 125 IRMEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPP 184
Query: 874 YNPRDIVANV 883
+N +++ +
Sbjct: 185 HNLTEVINGI 194
Score = 55 (24.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 1139 LTLEKVQGLLADRDKLNEEVDDLRK--ATPESLWVKDLDALDMQLDELDKSDARAEEER 1195
L L ++ GL +RDK+ +E DD+ K A + + + + L + + EL + + +ER
Sbjct: 452 LRLHRLTGL--ERDKILQEYDDILKYIARLKEILASEAEILKIIVGELRELKEKFGDER 508
>UNIPROTKB|Q8CM44 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265 HOGENOM:HOG000076278
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P09097 RefSeq:NP_710187.1
ProteinModelPortal:Q8CM44 SMR:Q8CM44 GeneID:1149349
KEGG:lil:LA_0006 PATRIC:22380851 BioCyc:LINT189518:GJBB-6-MONOMER
Uniprot:Q8CM44
Length = 834
Score = 177 (67.4 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 55/200 (27%), Positives = 97/200 (48%)
Query: 700 IKYSDFVNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 758
++ D + + + ++M+ + R++P + DGLKP R+IL +R + + + + V
Sbjct: 35 VEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCAKIV 94
Query: 759 SEHSA-YH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTR 816
E YH HG+ S+ ++ M Q+F S + L+ G FG+ + G + A+ RY R
Sbjct: 95 GEVIGNYHPHGDASVYEALVRMVQEF--SLRVPLIDGQGNFGSID--GDNPAAYRYTEAR 150
Query: 817 LSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYN 875
L + L + N D + +P P +LVNGS GI G ++ IP +N
Sbjct: 151 LEKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 210
Query: 876 PRDIV-ANVRRLLNGEMMEP 894
R+ + A + + N E+ P
Sbjct: 211 LRETIDAVIAVIRNPEITIP 230
Score = 47 (21.6 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 11/58 (18%), Positives = 30/58 (51%)
Query: 1123 VQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQ 1180
+ + D +L M + LT +VQ ++ + +++ + + DL+ + V ++ ++Q
Sbjct: 439 LSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKPSRVNEIVCTELQ 496
Score = 39 (18.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 959 SFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKK 995
S + G R DD V + E + +EG K+
Sbjct: 711 SGVTGMRLAEDDAIVGLSKYKEGEDIFVVSEEGYGKR 747
>TIGR_CMR|SO_3897 [details] [associations]
symbol:SO_3897 "DNA topoisomerase IV, A subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR005742 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097
RefSeq:NP_719428.1 ProteinModelPortal:Q8EAK5 SMR:Q8EAK5
GeneID:1171537 KEGG:son:SO_3897 PATRIC:23527476 Uniprot:Q8EAK5
Length = 758
Score = 170 (64.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/180 (28%), Positives = 86/180 (47%)
Query: 705 FVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-S 762
F + + +SM + R++P + DGLKP QR+I++ + ++K + + V +
Sbjct: 20 FTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKSARTVGDVLG 79
Query: 763 AYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPIT 821
YH HG+ + ++ MAQ F S L+ G +G + K A+ RY RLS +
Sbjct: 80 KYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDP-KSFAAMRYTEARLSKFS 136
Query: 822 RFLFPXXXXXXXXY-LNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880
L + N DG EP +P +L+NG GI G ++ IP +N R++V
Sbjct: 137 EVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPPHNVRELV 196
>TIGR_CMR|SPO_0726 [details] [associations]
symbol:SPO_0726 "DNA topoisomerase IV, A subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K02621
ProtClustDB:PRK05561 HOGENOM:HOG000076277 RefSeq:YP_165980.1
ProteinModelPortal:Q5LVH5 GeneID:3193734 KEGG:sil:SPO0726
PATRIC:23374725 OMA:KYKDGGL Uniprot:Q5LVH5
Length = 782
Score = 169 (64.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 50/176 (28%), Positives = 83/176 (47%)
Query: 706 VNKELILFSMADLQ-RSIPSMVDGLKPGQRKILFCSFKRNFIKEA---KVAQFSGYVSEH 761
+ + + ++++ + R++P DGLKP R+IL+ + K A+ SG V +
Sbjct: 27 IGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKISGDVMGN 86
Query: 762 SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPI 820
YH HG+ ++ + +AQDF + L+ G FG N G + A++RY R++ +
Sbjct: 87 --YHPHGDAAIYDAMARLAQDF--NVRYPLVDGQGNFG--NIDGDNPAASRYTEARMTIV 140
Query: 821 TRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYN 875
L + N DG EP P +L NGS GI G ++ IP +N
Sbjct: 141 AEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHN 196
>UNIPROTKB|Q9KPE0 [details] [associations]
symbol:VC_2430 "Topoisomerase IV, subunit A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097 GO:GO:0009340 PIR:F82078
RefSeq:NP_232060.1 ProteinModelPortal:Q9KPE0 SMR:Q9KPE0
DNASU:2612972 GeneID:2612972 KEGG:vch:VC2430 PATRIC:20083879
Uniprot:Q9KPE0
Length = 761
Score = 167 (63.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 51/179 (28%), Positives = 82/179 (45%)
Query: 705 FVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-S 762
F + +SM + R++P + DGLKP QR+I++ + AK + + V +
Sbjct: 18 FTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLG 77
Query: 763 AYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPIT 821
YH HG+ + ++ MAQ F S L+ G +G + K A+ RY +LS
Sbjct: 78 KYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDP-KSFAAMRYTEAKLSKFA 134
Query: 822 RFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDI 879
L + N DG EP +P +L+NG GI G ++ IP +N R++
Sbjct: 135 EILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREV 193
>TIGR_CMR|VC_2430 [details] [associations]
symbol:VC_2430 "topoisomerase IV, subunit A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR002205 InterPro:IPR005742 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097 GO:GO:0009340 PIR:F82078
RefSeq:NP_232060.1 ProteinModelPortal:Q9KPE0 SMR:Q9KPE0
DNASU:2612972 GeneID:2612972 KEGG:vch:VC2430 PATRIC:20083879
Uniprot:Q9KPE0
Length = 761
Score = 167 (63.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 51/179 (28%), Positives = 82/179 (45%)
Query: 705 FVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-S 762
F + +SM + R++P + DGLKP QR+I++ + AK + + V +
Sbjct: 18 FTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLG 77
Query: 763 AYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPIT 821
YH HG+ + ++ MAQ F S L+ G +G + K A+ RY +LS
Sbjct: 78 KYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDP-KSFAAMRYTEAKLSKFA 134
Query: 822 RFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDI 879
L + N DG EP +P +L+NG GI G ++ IP +N R++
Sbjct: 135 EILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREV 193
>UNIPROTKB|P0AES4 [details] [associations]
symbol:gyrA species:83333 "Escherichia coli K-12"
[GO:0042493 "response to drug" evidence=IMP] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA;IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0016020 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:X06373 EMBL:X06744
EMBL:M15631 EMBL:Y00544 PIR:S02340 RefSeq:NP_416734.1
RefSeq:YP_490470.1 PDB:1AB4 PDB:1X75 PDB:1ZI0 PDB:2Y3P PDB:3NUH
PDB:4ELY PDBsum:1AB4 PDBsum:1X75 PDBsum:1ZI0 PDBsum:2Y3P
PDBsum:3NUH PDBsum:4ELY ProteinModelPortal:P0AES4 SMR:P0AES4
DIP:DIP-36179N IntAct:P0AES4 MINT:MINT-201682 SWISS-2DPAGE:P0AES4
PaxDb:P0AES4 PRIDE:P0AES4 EnsemblBacteria:EBESCT00000004656
EnsemblBacteria:EBESCT00000017137 GeneID:12933138 GeneID:946614
KEGG:ecj:Y75_p2193 KEGG:eco:b2231 PATRIC:32119821 EchoBASE:EB0418
EcoGene:EG10423 BioCyc:EcoCyc:EG10423-MONOMER
BioCyc:ECOL316407:JW2225-MONOMER BioCyc:MetaCyc:EG10423-MONOMER
BindingDB:P0AES4 ChEMBL:CHEMBL1858 EvolutionaryTrace:P0AES4
Genevestigator:P0AES4 Gene3D:1.10.268.10 Uniprot:P0AES4
Length = 875
Score = 181 (68.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 58/167 (34%), Positives = 86/167 (51%)
Query: 720 RSIPSMVDGLKPGQRKILFC-SFKRNFIKEA--KVAQFSGYVSEHSAYH-HGEQSLASTI 775
R++P + DGLKP R++L+ + N +A K A+ G V YH HG+ ++ TI
Sbjct: 32 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVYDTI 89
Query: 776 LGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXY 835
+ MAQ F S L+ G FG+ + G AA+ RY RL+ I L +
Sbjct: 90 VRMAQPF--SLRYMLVDGQGNFGSID--GDSAAAMRYTEIRLAKIAHELMADLEKETVDF 145
Query: 836 L-NEDGQQIEPTWYMPI-IPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880
+ N DG + P MP IP +LVNGS GI G ++ IP +N +++
Sbjct: 146 VDNYDGTEKIPD-VMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 191
Score = 37 (18.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1235 MGEMDNVTKVVKPKG 1249
+GE D V ++ P+G
Sbjct: 726 LGEGDKVVSLIVPRG 740
>UNIPROTKB|Q89K54 [details] [associations]
symbol:gyrA "Topoisomerase II" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR005742 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 TIGRFAMs:TIGR01062 HSSP:P09097 OMA:KYKDGGL
RefSeq:NP_771697.1 ProteinModelPortal:Q89K54 GeneID:1051823
KEGG:bja:bll5057 PATRIC:21193782
BioCyc:BJAP224911:GJEJ-5094-MONOMER Uniprot:Q89K54
Length = 751
Score = 178 (67.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 54/170 (31%), Positives = 84/170 (49%)
Query: 718 LQRSIPSMVDGLKPGQRKILF-CSFKR-----NFIKEAKVAQFSGYVSEHSAYH-HGEQS 770
+ R++P DGLKP R+IL+ R F K AK+ G V ++H HG+Q+
Sbjct: 35 MHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSAKIV---GDVM--GSFHPHGDQA 89
Query: 771 LASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXX 830
+ ++ +AQDF S+ L+ G FG N G + A+ RY R++ + R L
Sbjct: 90 IYDAMVRLAQDF--SSRYPLVDGQGNFG--NIDGDNPAAYRYTEARMTDVARLLLEGIDE 145
Query: 831 XXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDI 879
+ N DGQ EP P +L NG++GI G ++ IP +N ++
Sbjct: 146 DGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPPHNAAEL 195
Score = 38 (18.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 1178 DMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARA 1231
D L ++K DA+++ +KG G + +K+A A + S RA
Sbjct: 197 DAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVRA 250
>UNIPROTKB|A6VD77 [details] [associations]
symbol:parC "DNA topoisomerase IV, A subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
KO:K02621 ProtClustDB:PRK05561 HOGENOM:HOG000076277 OMA:YKAGDSY
TIGRFAMs:TIGR01062 RefSeq:YP_001351012.1 ProteinModelPortal:A6VD77
SMR:A6VD77 STRING:A6VD77 GeneID:5358846 KEGG:pap:PSPA7_5693
PATRIC:19832871 BioCyc:PAER381754:GHMY-5699-MONOMER Uniprot:A6VD77
Length = 754
Score = 173 (66.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 52/190 (27%), Positives = 94/190 (49%)
Query: 703 SDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH 761
++F + + +SM + R++P + DGLKP QR+I++ + ++K + + V +
Sbjct: 18 AEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKSARTVGDV 77
Query: 762 -SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSP 819
+H HG+ + ++ MAQ F S L+ G +G + K A+ RY RLS
Sbjct: 78 LGKFHPHGDLACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDP-KSFAAMRYTEARLSR 134
Query: 820 ITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRD 878
+ L ++ N DG EP +P +L+NG+ GI G ++ +P +N R+
Sbjct: 135 YSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPPHNLRE 194
Query: 879 IVANVRRLLN 888
+ + RLL+
Sbjct: 195 VASACVRLLD 204
Score = 42 (19.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 981 EESMMRTKQEGLLKKFKLTTTISTSNMHL 1009
EE +R +QE LLK+ K T+ S L
Sbjct: 436 EEMKIRGEQEELLKEQKRLQTLLGSEAKL 464
>UNIPROTKB|Q8A9B6 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 HSSP:P09097 RefSeq:NP_809812.1
ProteinModelPortal:Q8A9B6 SMR:Q8A9B6 GeneID:1076273
KEGG:bth:BT_0899 PATRIC:21056597 BioCyc:BTHE226186:GJXV-915-MONOMER
Uniprot:Q8A9B6
Length = 858
Score = 158 (60.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 79/340 (23%), Positives = 144/340 (42%)
Query: 695 QKEKYIKYS--DFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKV 751
++++ IK + + + I +SM+ + R++P + DG KP R+IL+ + +
Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62
Query: 752 AQFSGYVSEH-SAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAAS 809
+ + V E YH HG+ S+ ++ MAQ++ + L+ G FG+ + G A+
Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEW--AMRYPLVDGQGNFGSVD--GDSPAA 118
Query: 810 ARYIFTRLSPITRFLFPXXXXXXXXYL-NEDGQQIEPTWYMPI-IPTVLVNGSEGIGTGW 867
RY RL+ + + + N D EP MP IP +LVNG+ GI G
Sbjct: 119 MRYTEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPK-VMPTRIPNLLVNGASGIAVGM 177
Query: 868 SSYIPNYNPRDIVANVRRLLNG------EMME----PMHP---WYRGFGGTIEKTASKEA 914
++ +P +N +++ ++ E+M P P + G G E +
Sbjct: 178 ATNMPPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRG 237
Query: 915 GVTYTVTGIIEE-VNETTLRIKELPIRRWTQDYREFLESIIDQ-NDSFIRGFRQYSDDTT 972
V IE + + E+P + + E ++ I D ND I G +D++
Sbjct: 238 RVVMRAKAEIETGQTHDKIVVTEIP---YNVNKAELIKYIADLVNDKRIEGISNANDESD 294
Query: 973 VDFEVFLSEESMMRTKQEGLLKKFKLT---TTISTSNMHL 1009
D + + L K +K+T T+ +N+ L
Sbjct: 295 RDGMRIVIDVKRDANASVVLNKLYKMTALQTSFGVNNVAL 334
Score = 56 (24.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 1123 VQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRK--ATPESLWVKDLDALDMQ 1180
++ + + S AI + L ++ GL+ +D+L+ E +++ K A ES+ D +
Sbjct: 408 IERFNLTEIQSRAIVEMRLRQLTGLM--QDQLHAEYEEIMKQIAYLESILADDEVCRKVM 465
Query: 1181 LDELDKSDARAEEER 1195
DEL + A+ +ER
Sbjct: 466 KDELLEVKAKYGDER 480
>UNIPROTKB|Q7NIY2 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 TIGRFAMs:TIGR01063 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P09097 RefSeq:NP_924996.1
ProteinModelPortal:Q7NIY2 GeneID:2600452 KEGG:gvi:gvip274
PATRIC:22043559 OMA:PNYDGTR BioCyc:GVIO251221:GH9A-2101-MONOMER
Uniprot:Q7NIY2
Length = 825
Score = 170 (64.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 52/179 (29%), Positives = 87/179 (48%)
Query: 720 RSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEH-SAYH-HGEQSLASTILG 777
R++P + DGLKP R+ILF + + + + V + YH HG+ ++ ++
Sbjct: 40 RALPDVRDGLKPVHRRILFAMHELGLAPDRPFRKCARVVGDVLGKYHPHGDTAVYDALVR 99
Query: 778 MAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPI-TRFLFPXXXXXXXXYL 836
+ QDF S+ LL +G FG+ + A+ RY RL+ + L +
Sbjct: 100 LVQDF--SSRYPLLSGHGNFGSIDND--PPAAMRYTECRLAAVGVDALLAEIDDQTVEFT 155
Query: 837 -NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLL-NGEMME 893
N DG Q EP +P +L+NGS GI G ++ IP +N ++V + L+ N E+ +
Sbjct: 156 DNFDGSQREPEVLPARLPVLLLNGSAGIAVGMATNIPPHNLGELVDGLVALIDNPELAD 214
Score = 42 (19.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 922 GIIEEVNETTLRIKELPIRRWTQDYREFLES 952
G+ E +E L ++P+RR TQ RE L S
Sbjct: 426 GLSERQSEEIL---QMPLRRLTQLDRERLAS 453
Score = 42 (19.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 925 EEVNETTLR-IKELPIRRWTQDYREFLESIID 955
EE+ + LR + +L R ++RE E +I+
Sbjct: 433 EEILQMPLRRLTQLDRERLASEHRELREKVIE 464
>TIGR_CMR|CBU_0524 [details] [associations]
symbol:CBU_0524 "DNA gyrase, A subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:NP_819556.2 PRIDE:Q83E13 GeneID:1208409
KEGG:cbu:CBU_0524 PATRIC:17929749
BioCyc:CBUR227377:GJ7S-527-MONOMER Uniprot:Q83E13
Length = 850
Score = 164 (62.8 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 51/166 (30%), Positives = 81/166 (48%)
Query: 720 RSIPSMVDGLKPGQRKILFCSFK--RNFIK-EAKVAQFSGYVSEHSAYH-HGEQSLASTI 775
R++P + DGLKP R++L+ + ++ K K A+ G V YH HG+ ++ TI
Sbjct: 34 RALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVI--GKYHPHGDVAVYDTI 91
Query: 776 LGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXY 835
+ MAQ F S L+ G FG+ + G A+ RY RLS L +
Sbjct: 92 VRMAQPF--SLRYLLIDGQGNFGSVD--GDAPAAMRYTEIRLSRFAHALMADLDKETVDF 147
Query: 836 L-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880
N D ++ P +P +L+NG+ GI G ++ IP +N +I+
Sbjct: 148 APNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEII 193
Score = 41 (19.5 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 1141 LEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERM 1196
+E++ +++D DKL+E + + A E + + +L D EE R+
Sbjct: 486 IEELIAIVSDPDKLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRV 541
>UNIPROTKB|H7BZ82 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA] InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013760 Pfam:PF00521 GO:GO:0005524 GO:GO:0005694
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 Gene3D:1.10.268.10
HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
ProteinModelPortal:H7BZ82 Ensembl:ENST00000413971 Bgee:H7BZ82
Uniprot:H7BZ82
Length = 70
Score = 122 (48.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 1009 LFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNG 1068
LFD G +KKY+T + IL+EFF +RL +Y RK+ RFIL + G
Sbjct: 2 LFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQG 61
Query: 1069 EIVVNNRK 1076
+I + +R+
Sbjct: 62 KITIGSRR 69
>UNIPROTKB|Q7RHG3 [details] [associations]
symbol:PY04024 "DNA topoisomerase II, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 HSSP:P06982 EMBL:AABL01001206 RefSeq:XP_724272.1
ProteinModelPortal:Q7RHG3 STRING:Q7RHG3 GeneID:3789597
KEGG:pyo:PY04024 EuPathDB:PlasmoDB:PY04024 Uniprot:Q7RHG3
Length = 930
Score = 154 (59.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 115/504 (22%), Positives = 209/504 (41%)
Query: 114 ISVHNS-GDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFS 172
+SV N+ + V + ++ +Y EL G ++ N D K G + Y T IF
Sbjct: 283 LSVSNALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIKKRGTQIHYKPDNT-IFK 341
Query: 173 TEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLED 232
T I ++ + + ++ + N+ + +G N KVS ++ + T L++
Sbjct: 342 TN-IKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKG-NSDKVS--ENVENNSYTKLDN 397
Query: 233 DVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEIC 292
++K L + K K + N + K + + + K++ H + +W
Sbjct: 398 YEYEIIKHEG-GLDEYMEKLTKNKTNIFKTNNKVIS--ISCFQKNI---HVDLKLKW--- 448
Query: 293 VTLSEGQFQQ--VSFVNGIATIKGGTHVD---YVANQXXXXXXXXXXXXXXXXXXXXXXX 347
VT Q+ + +SFVN + TI GGTHVD Y ++
Sbjct: 449 VT---NQYNENILSFVNNVNTIDGGTHVDAMKYAISRSINYNVKKNETIKNFVNIPGEYI 505
Query: 348 XXXLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWA 407
L ++ ++NP F+ QTK L S+ K L +K++ LL+
Sbjct: 506 REGLTAILSIKMNNPEFEGQTKTKL----GSYYLKPILESIIFEKLSEIFDFEPNLLNTI 561
Query: 408 NFKQSKDLKKNDGTKT-ED-VRGISKLEDANLAGGRN----SEQCT---LILTEGDSAKA 458
K + K ++ K D +R + + + G+ S+ + + + EGDSA
Sbjct: 562 YLKALQAKKSDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAG 621
Query: 459 LAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQ-VLNNSEIGNIKKILGLKQGVEYNNVK 517
A + R+ + PL+GK+LNV + +N+ + N E+ ++ +GL V Y+N K
Sbjct: 622 SAKQARN---REIQAILPLKGKILNVEKIKNNKKIFENIELKSLITAIGLN--VNYDNSK 676
Query: 518 SLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFW 577
+ + + D + +F+ L + I M D DG HI LL+ F++ F
Sbjct: 677 TGK-SNTNKRNDNKDIKKNNFIDTS-LRYGKII---IMTDADVDGEHICILLLTFLYRFQ 731
Query: 578 PSLLKIPSFLVEFITPIVKAT-NK 600
+++ + V P+ K T NK
Sbjct: 732 KEIIENGNVYVA-CPPLYKVTYNK 754
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 989 QEGLLKKFKLTTTISTSNMHLF-DSK--GVIKKYDTPE-QILEEFFHIRLEFYEKRKK 1042
++ ++ KF +TT S +H + DS+ ++ D + QILE +KRKK
Sbjct: 761 KDSVISKFNVTTKASKYIIHTYSDSELNELLALLDMDKAQILEN-----KNILKKRKK 813
>UNIPROTKB|B4DLV2 [details] [associations]
symbol:TOP2B "cDNA FLJ50986, highly similar to DNA
topoisomerase 2-beta (EC 5.99.1.3)" species:9606 "Homo sapiens"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR012542
InterPro:IPR013757 InterPro:IPR013760 Pfam:PF08070 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:1.10.268.10 UniGene:Hs.475733 HGNC:HGNC:11990 ChiTaRS:TOP2B
EMBL:AC093416 EMBL:AK297171 IPI:IPI01014228 SMR:B4DLV2
STRING:B4DLV2 Ensembl:ENST00000540199 Ensembl:ENST00000542520
UCSC:uc011awm.1 HOVERGEN:HBG106521 Uniprot:B4DLV2
Length = 478
Score = 120 (47.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 1134 MAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEE 1193
M++ +LT EKV+ L+ RD EV+DL++ +P LW +DL A ++ELDK +++ E
Sbjct: 1 MSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAF---VEELDKVESQERE 57
Query: 1194 ERMK-IKGNG-NGDAG-PKI 1210
+ + + G G G PK+
Sbjct: 58 DVLAGMSGKAIKGKVGKPKV 77
Score = 64 (27.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 1280 NEQLASTKLEPSPDQSGVMETEKVQ---VPAKKKEPS-------KRTAAQKKVVTVETSD 1329
NE+ +++ PS G+ +T+KV V AKK +PS KR QKKVV SD
Sbjct: 319 NEEDSASVFSPS---FGLKQTDKVPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSD 375
Query: 1330 S 1330
S
Sbjct: 376 S 376
>GENEDB_PFALCIPARUM|PFL1120c [details] [associations]
symbol:PFL1120c "DNA GyrAse a-subunit, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR002205 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0020011 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
GenomeReviews:AE014188_GR RefSeq:XP_001350630.1 HSSP:P09097
ProteinModelPortal:Q8I0X3 EnsemblProtists:PFL1120c:mRNA
GeneID:811276 KEGG:pfa:PFL1120c EuPathDB:PlasmoDB:PF3D7_1223300
HOGENOM:HOG000281067 ProtClustDB:CLSZ2514562 Uniprot:Q8I0X3
Length = 1222
Score = 150 (57.9 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 66/215 (30%), Positives = 103/215 (47%)
Query: 691 NHLDQKEKYIK--YSDFVNKELI---LFSMAD---LQRSIPSMVDGLKPGQRKILFCSFK 742
N++++ K IK Y D E++ S A+ L R + DGLK QR+I++ ++
Sbjct: 159 NNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYE 218
Query: 743 RN--FIKEA--KVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQF 797
N K+ K A+ G V YH HG++S+ ++ +AQ +NN+ L++ G F
Sbjct: 219 INKGIDKKGYKKCARIVGEVI--GKYHPHGDKSVYDALVRLAQKH-HNNNL-LIKGYGNF 274
Query: 798 GTRNQGGKDAASARYIFTRLSPITR-FLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTV 855
G+ +AA+ RY ++S L Y+ N DG + EP IP +
Sbjct: 275 GSVEY---NAAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLL 331
Query: 856 LVNGSEGIGTGWSSYIPNYNPRDIVAN--VRRLLN 888
L+NG GI S IP +N D VAN + L+N
Sbjct: 332 LINGCSGIAVSILSSIPCHNLID-VANCCINFLIN 365
Score = 47 (21.6 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 872 PNYNPRDIVANVRRLLNGEMME 893
PN P +++ N+ LLN + E
Sbjct: 453 PNVKPNELIENIINLLNDKKNE 474
Score = 44 (20.5 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1222 NDKKSNNARATEAMGEMDNVTK 1243
ND N++ T + DNVTK
Sbjct: 719 NDNNINHSNYTHDLPNTDNVTK 740
Score = 41 (19.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 1209 KIVAKRAPKNARKNDKKSNNARA-TEAMGEMDNV 1241
KI+ K P N + N+ N + E DN+
Sbjct: 445 KIIIKNLPPNVKPNELIENIINLLNDKKNEHDNI 478
>UNIPROTKB|Q8I0X3 [details] [associations]
symbol:GyrA "DNA gyrase subunit A;evidence=inferred from
direct assay" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=IDA] InterPro:IPR002205 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0020011 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
GenomeReviews:AE014188_GR RefSeq:XP_001350630.1 HSSP:P09097
ProteinModelPortal:Q8I0X3 EnsemblProtists:PFL1120c:mRNA
GeneID:811276 KEGG:pfa:PFL1120c EuPathDB:PlasmoDB:PF3D7_1223300
HOGENOM:HOG000281067 ProtClustDB:CLSZ2514562 Uniprot:Q8I0X3
Length = 1222
Score = 150 (57.9 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 66/215 (30%), Positives = 103/215 (47%)
Query: 691 NHLDQKEKYIK--YSDFVNKELI---LFSMAD---LQRSIPSMVDGLKPGQRKILFCSFK 742
N++++ K IK Y D E++ S A+ L R + DGLK QR+I++ ++
Sbjct: 159 NNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYE 218
Query: 743 RN--FIKEA--KVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQF 797
N K+ K A+ G V YH HG++S+ ++ +AQ +NN+ L++ G F
Sbjct: 219 INKGIDKKGYKKCARIVGEVI--GKYHPHGDKSVYDALVRLAQKH-HNNNL-LIKGYGNF 274
Query: 798 GTRNQGGKDAASARYIFTRLSPITR-FLFPXXXXXXXXYL-NEDGQQIEPTWYMPIIPTV 855
G+ +AA+ RY ++S L Y+ N DG + EP IP +
Sbjct: 275 GSVEY---NAAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLL 331
Query: 856 LVNGSEGIGTGWSSYIPNYNPRDIVAN--VRRLLN 888
L+NG GI S IP +N D VAN + L+N
Sbjct: 332 LINGCSGIAVSILSSIPCHNLID-VANCCINFLIN 365
Score = 47 (21.6 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 872 PNYNPRDIVANVRRLLNGEMME 893
PN P +++ N+ LLN + E
Sbjct: 453 PNVKPNELIENIINLLNDKKNE 474
Score = 44 (20.5 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1222 NDKKSNNARATEAMGEMDNVTK 1243
ND N++ T + DNVTK
Sbjct: 719 NDNNINHSNYTHDLPNTDNVTK 740
Score = 41 (19.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 1209 KIVAKRAPKNARKNDKKSNNARA-TEAMGEMDNV 1241
KI+ K P N + N+ N + E DN+
Sbjct: 445 KIIIKNLPPNVKPNELIENIINLLNDKKNEHDNI 478
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1484 1325 0.00085 124 3 11 22 0.43 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 153
No. of states in DFA: 633 (67 KB)
Total size of DFA: 553 KB (2251 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 119.80u 0.16s 119.96t Elapsed: 00:00:05
Total cpu time: 119.87u 0.16s 120.03t Elapsed: 00:00:05
Start: Sat May 11 16:24:59 2013 End: Sat May 11 16:25:04 2013
WARNINGS ISSUED: 1