Query 000459
Match_columns 1484
No_of_seqs 373 out of 3272
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03237 DNA topoisomerase 2; 100.0 0E+00 0E+00 3448.6 119.6 1419 5-1482 3-1465(1465)
2 PTZ00108 DNA topoisomerase 2-l 100.0 9E-317 2E-321 3000.5 109.9 1137 23-1196 2-1156(1388)
3 PLN03128 DNA topoisomerase 2; 100.0 1E-313 2E-318 2960.4 95.9 1123 25-1182 1-1135(1135)
4 KOG0355 DNA topoisomerase type 100.0 2E-204 5E-209 1828.3 46.7 833 25-924 2-842 (842)
5 COG0187 GyrB Type IIA topoisom 100.0 4E-170 1E-174 1509.2 48.7 595 25-689 5-628 (635)
6 PHA02569 39 DNA topoisomerase 100.0 1E-158 2E-163 1462.9 52.5 591 29-686 2-602 (602)
7 TIGR01058 parE_Gpos DNA topois 100.0 1E-156 2E-161 1453.0 52.1 587 28-688 7-627 (637)
8 PTZ00109 DNA gyrase subunit b; 100.0 3E-154 6E-159 1428.4 47.8 591 28-690 102-901 (903)
9 PRK05559 DNA topoisomerase IV 100.0 7E-151 2E-155 1406.8 52.3 590 28-688 10-625 (631)
10 PRK05644 gyrB DNA gyrase subun 100.0 1E-150 2E-155 1404.8 50.0 588 28-688 10-630 (638)
11 TIGR01055 parE_Gneg DNA topois 100.0 1E-148 2E-153 1382.6 47.9 586 28-688 6-622 (625)
12 PRK14939 gyrB DNA gyrase subun 100.0 3E-146 7E-151 1366.1 45.2 574 28-672 9-616 (756)
13 TIGR01059 gyrB DNA gyrase, B s 100.0 1E-143 2E-148 1351.4 49.5 590 28-689 3-647 (654)
14 smart00433 TOP2c Topoisomerase 100.0 1E-139 2E-144 1301.9 44.2 566 78-689 1-594 (594)
15 PHA02592 52 DNA topisomerase I 100.0 9E-121 2E-125 1082.7 39.0 433 697-1179 3-439 (439)
16 smart00434 TOP4c DNA Topoisome 100.0 1E-114 3E-119 1041.4 39.8 431 700-1171 1-444 (445)
17 cd00187 TOP4c DNA Topoisomeras 100.0 1E-113 2E-118 1028.4 35.8 419 718-1177 1-445 (445)
18 PF00521 DNA_topoisoIV: DNA gy 100.0 4E-112 9E-117 1022.1 23.1 404 720-1175 1-426 (426)
19 PRK05561 DNA topoisomerase IV 100.0 4E-108 8E-113 1034.4 37.0 443 696-1182 9-482 (742)
20 TIGR01061 parC_Gpos DNA topois 100.0 6E-107 1E-111 1022.8 40.5 442 698-1181 2-471 (738)
21 PRK05560 DNA gyrase subunit A; 100.0 2E-106 5E-111 1031.5 38.9 444 696-1182 4-475 (805)
22 TIGR01063 gyrA DNA gyrase, A s 100.0 2E-104 4E-109 1011.9 38.7 441 698-1181 2-471 (800)
23 TIGR01062 parC_Gneg DNA topois 100.0 4E-104 9E-109 987.6 36.6 440 698-1181 2-468 (735)
24 PRK13979 DNA topoisomerase IV 100.0 5E-102 1E-106 991.7 37.6 446 694-1181 10-490 (957)
25 COG0188 GyrA Type IIA topoisom 100.0 4E-101 9E-106 958.7 35.0 443 697-1181 8-478 (804)
26 PRK09631 DNA topoisomerase IV 100.0 2.9E-98 6E-103 916.7 38.8 417 701-1164 3-426 (635)
27 PRK12758 DNA topoisomerase IV 100.0 4.4E-95 1E-99 896.2 40.1 439 699-1182 20-467 (869)
28 PRK09630 DNA topoisomerase IV 100.0 9.2E-95 2E-99 842.0 37.7 421 701-1162 3-431 (479)
29 cd03366 TOPRIM_TopoIIA_GyrB TO 100.0 2.5E-48 5.3E-53 379.9 9.9 114 446-592 1-114 (114)
30 cd01030 TOPRIM_TopoIIA_like TO 100.0 8.9E-48 1.9E-52 378.1 10.6 115 446-592 1-115 (115)
31 cd03365 TOPRIM_TopoIIA TOPRIM_ 100.0 2.1E-47 4.6E-52 377.5 8.9 119 446-592 1-120 (120)
32 cd03481 TopoIIA_Trans_ScTopoII 100.0 2.3E-31 4.9E-36 278.6 15.2 143 265-408 1-152 (153)
33 PF00204 DNA_gyraseB: DNA gyra 100.0 2.7E-28 5.7E-33 262.0 12.2 146 266-411 1-161 (173)
34 cd00822 TopoII_Trans_DNA_gyras 99.9 2.3E-26 5.1E-31 246.4 15.1 149 266-414 2-167 (172)
35 PRK00095 mutL DNA mismatch rep 99.6 5.3E-15 1.1E-19 187.3 17.5 248 76-365 20-295 (617)
36 TIGR01052 top6b DNA topoisomer 99.4 1.1E-12 2.3E-17 159.9 13.1 165 76-260 26-204 (488)
37 PF00986 DNA_gyraseB_C: DNA gy 99.4 7.9E-13 1.7E-17 118.5 5.4 59 625-685 4-65 (65)
38 PRK04184 DNA topoisomerase VI 99.4 4.2E-11 9.1E-16 147.5 22.4 187 29-258 10-211 (535)
39 PLN03237 DNA topoisomerase 2; 99.3 1.9E-11 4.2E-16 161.4 19.0 145 1024-1181 1013-1172(1465)
40 COG1389 DNA topoisomerase VI, 99.3 7.8E-12 1.7E-16 146.4 8.9 192 29-261 10-214 (538)
41 PRK14867 DNA topoisomerase VI 99.0 5.8E-10 1.3E-14 139.8 11.6 189 29-260 10-210 (659)
42 TIGR00585 mutl DNA mismatch re 99.0 3.9E-09 8.5E-14 124.2 12.7 162 76-260 20-192 (312)
43 PF01751 Toprim: Toprim domain 98.7 1.9E-08 4.1E-13 99.0 6.3 91 447-581 1-92 (100)
44 PRK14868 DNA topoisomerase VI 98.5 4.9E-07 1.1E-11 114.1 11.3 186 29-260 20-219 (795)
45 PF02518 HATPase_c: Histidine 98.4 1.3E-07 2.8E-12 93.7 2.4 87 77-179 4-92 (111)
46 PF13589 HATPase_c_3: Histidin 98.2 7.2E-07 1.6E-11 92.9 3.3 99 80-193 4-106 (137)
47 cd00329 TopoII_MutL_Trans MutL 97.9 2.6E-05 5.6E-10 76.5 6.4 73 287-372 27-106 (107)
48 KOG0355 DNA topoisomerase type 97.7 2E-06 4.4E-11 108.1 -4.3 146 719-876 99-250 (842)
49 PRK05218 heat shock protein 90 97.7 0.00012 2.7E-09 93.6 10.9 129 81-223 29-181 (613)
50 PRK14083 HSP90 family protein; 97.7 0.0001 2.2E-09 93.8 8.8 130 80-221 25-165 (601)
51 PRK14939 gyrB DNA gyrase subun 97.3 0.00018 3.9E-09 93.1 5.3 86 600-689 661-749 (756)
52 PTZ00272 heat shock protein 83 96.9 0.0024 5.3E-08 82.5 8.7 128 82-222 29-177 (701)
53 PTZ00108 DNA topoisomerase 2-l 96.9 0.013 2.8E-07 80.2 15.7 149 1024-1185 987-1152(1388)
54 smart00387 HATPase_c Histidine 96.9 0.0015 3.3E-08 62.4 5.3 85 78-178 5-91 (111)
55 cd00075 HATPase_c Histidine ki 96.8 0.0018 3.8E-08 60.9 5.2 80 79-174 1-82 (103)
56 COG0326 HtpG Molecular chapero 96.5 0.0038 8.2E-08 78.5 6.4 129 82-222 31-180 (623)
57 PTZ00130 heat shock protein 90 96.3 0.008 1.7E-07 78.2 8.2 128 83-222 93-242 (814)
58 COG0323 MutL DNA mismatch repa 96.2 0.012 2.6E-07 76.0 9.2 167 63-258 15-191 (638)
59 PF13581 HATPase_c_2: Histidin 96.2 0.018 3.8E-07 58.5 8.4 91 79-191 32-124 (125)
60 TIGR01925 spIIAB anti-sigma F 96.0 0.024 5.2E-07 58.6 8.5 83 78-178 39-123 (137)
61 PRK04069 serine-protein kinase 95.8 0.025 5.5E-07 60.7 7.9 96 78-190 42-139 (161)
62 TIGR01386 cztS_silS_copS heavy 95.7 0.015 3.3E-07 71.0 6.7 81 79-174 354-436 (457)
63 PRK10604 sensor protein RstB; 95.6 0.027 5.9E-07 69.5 8.2 80 79-175 320-401 (433)
64 COG2205 KdpD Osmosensitive K+ 95.5 0.016 3.4E-07 74.5 5.3 77 81-171 774-853 (890)
65 COG3920 Signal transduction hi 95.5 0.03 6.5E-07 63.4 7.1 87 78-194 122-215 (221)
66 PRK03660 anti-sigma F factor; 95.3 0.081 1.8E-06 55.2 9.1 84 78-179 39-124 (146)
67 TIGR01924 rsbW_low_gc serine-p 95.1 0.12 2.6E-06 55.5 10.2 97 78-191 42-140 (159)
68 PRK15053 dpiB sensor histidine 95.0 0.034 7.4E-07 70.3 6.6 81 78-173 432-515 (545)
69 TIGR02938 nifL_nitrog nitrogen 94.7 0.04 8.6E-07 67.6 5.8 81 79-174 388-471 (494)
70 PRK11006 phoR phosphate regulo 94.4 0.066 1.4E-06 65.8 6.7 81 78-173 317-399 (430)
71 COG3850 NarQ Signal transducti 94.4 0.065 1.4E-06 66.2 6.3 51 79-134 482-534 (574)
72 PRK11086 sensory histidine kin 94.3 0.055 1.2E-06 67.9 5.9 77 78-173 433-511 (542)
73 PRK10549 signal transduction h 93.7 0.061 1.3E-06 66.3 4.6 81 79-174 353-435 (466)
74 PRK10364 sensor protein ZraS; 93.7 0.059 1.3E-06 66.8 4.4 76 78-174 348-425 (457)
75 KOG1978 DNA mismatch repair pr 93.6 0.096 2.1E-06 66.3 6.0 123 76-218 18-145 (672)
76 PRK10337 sensor protein QseC; 93.6 0.093 2E-06 64.5 5.8 77 79-175 353-429 (449)
77 COG3290 CitA Signal transducti 93.5 0.081 1.8E-06 65.8 4.9 81 78-176 427-510 (537)
78 PRK11100 sensory histidine kin 93.4 0.099 2.1E-06 64.2 5.6 80 79-174 369-450 (475)
79 PRK09303 adaptive-response sen 93.4 0.089 1.9E-06 64.0 5.1 78 79-173 273-353 (380)
80 PRK09835 sensor kinase CusS; P 93.4 0.12 2.5E-06 64.0 6.2 81 78-173 375-457 (482)
81 TIGR03785 marine_sort_HK prote 93.3 0.11 2.4E-06 68.4 6.1 83 78-175 597-681 (703)
82 KOG1979 DNA mismatch repair pr 93.1 0.16 3.5E-06 63.1 6.6 161 65-258 21-195 (694)
83 PRK10755 sensor protein BasS/P 93.1 0.14 3E-06 61.2 6.0 77 79-174 248-326 (356)
84 TIGR02916 PEP_his_kin putative 92.9 0.17 3.6E-06 66.4 6.9 75 78-173 579-656 (679)
85 PRK09470 cpxA two-component se 92.5 0.23 4.9E-06 61.0 7.1 78 79-173 354-433 (461)
86 COG4585 Signal transduction hi 92.4 0.19 4.2E-06 60.7 6.0 48 77-128 278-327 (365)
87 PRK09467 envZ osmolarity senso 92.2 0.23 5E-06 60.7 6.4 77 79-174 332-410 (435)
88 PRK10600 nitrate/nitrite senso 92.2 0.4 8.7E-06 61.4 8.8 44 79-126 470-515 (569)
89 PRK11644 sensory histidine kin 92.1 0.19 4.2E-06 63.4 5.9 45 78-126 410-456 (495)
90 PRK10815 sensor protein PhoQ; 91.8 0.2 4.3E-06 63.1 5.4 75 79-174 379-455 (485)
91 PRK11073 glnL nitrogen regulat 91.8 0.29 6.4E-06 57.9 6.5 76 78-173 237-324 (348)
92 TIGR02966 phoR_proteo phosphat 91.7 0.41 8.9E-06 55.5 7.5 80 79-173 230-311 (333)
93 PRK11360 sensory histidine kin 91.3 0.27 5.9E-06 61.9 5.9 74 79-173 501-577 (607)
94 PRK13837 two-component VirA-li 91.2 0.25 5.4E-06 66.3 5.6 94 78-193 560-674 (828)
95 PRK15347 two component system 91.0 0.29 6.4E-06 65.9 6.1 77 79-175 514-592 (921)
96 PRK14900 valS valyl-tRNA synth 90.5 0.79 1.7E-05 63.0 9.5 22 1143-1164 843-864 (1052)
97 PRK10490 sensor protein KdpD; 89.8 0.34 7.3E-06 65.6 5.0 80 78-174 778-859 (895)
98 COG4191 Signal transduction hi 89.7 0.48 1E-05 59.7 5.8 77 39-128 470-548 (603)
99 PRK13560 hypothetical protein; 89.4 0.64 1.4E-05 61.3 7.1 48 79-126 712-762 (807)
100 TIGR02956 TMAO_torS TMAO reduc 89.0 0.3 6.6E-06 66.2 3.8 81 78-176 579-662 (968)
101 COG0642 BaeS Signal transducti 88.5 0.48 1E-05 54.0 4.5 46 78-127 228-275 (336)
102 PRK10547 chemotaxis protein Ch 88.2 0.82 1.8E-05 59.8 6.7 44 84-127 391-445 (670)
103 PRK11466 hybrid sensory histid 87.8 1 2.2E-05 60.9 7.6 94 79-192 562-660 (914)
104 PRK10618 phosphotransfer inter 87.2 0.82 1.8E-05 61.9 6.1 99 78-193 565-671 (894)
105 COG3851 UhpB Signal transducti 86.1 1.1 2.4E-05 53.4 5.4 45 78-126 410-456 (497)
106 COG2172 RsbW Anti-sigma regula 86.0 4.1 8.8E-05 43.5 9.3 82 79-180 41-127 (146)
107 PRK10841 hybrid sensory kinase 85.1 1.3 2.7E-05 60.5 6.3 81 79-175 563-645 (924)
108 PRK11107 hybrid sensory histid 84.6 1.1 2.3E-05 60.6 5.3 80 79-174 409-495 (919)
109 PRK11091 aerobic respiration c 83.8 1.4 3.1E-05 58.6 5.9 82 78-174 398-482 (779)
110 PRK14900 valS valyl-tRNA synth 82.6 3 6.6E-05 57.5 8.3 39 1138-1177 846-886 (1052)
111 PRK13557 histidine kinase; Pro 82.4 1.6 3.4E-05 54.7 5.2 96 78-193 277-393 (540)
112 PRK13559 hypothetical protein; 81.2 3.3 7E-05 49.5 7.1 49 78-126 267-319 (361)
113 KOG1977 DNA mismatch repair pr 81.2 0.92 2E-05 57.5 2.4 161 79-260 22-194 (1142)
114 PRK09959 hybrid sensory histid 80.8 2 4.3E-05 60.0 5.8 80 78-175 828-914 (1197)
115 cd00188 TOPRIM Topoisomerase-p 80.1 4.2 9E-05 36.9 5.9 72 447-575 2-73 (83)
116 PRK10935 nitrate/nitrite senso 80.0 3 6.5E-05 53.0 6.5 43 79-125 472-517 (565)
117 COG5002 VicK Signal transducti 75.6 1.8 3.8E-05 51.6 2.3 110 78-227 342-453 (459)
118 COG4564 Signal transduction hi 71.6 5.6 0.00012 47.1 5.1 47 77-127 358-406 (459)
119 PF14501 HATPase_c_5: GHKL dom 71.0 11 0.00024 37.1 6.4 72 79-174 6-79 (100)
120 COG5000 NtrY Signal transducti 60.6 12 0.00025 48.0 5.1 50 78-127 600-655 (712)
121 COG4192 Signal transduction hi 59.4 12 0.00027 46.1 4.9 49 79-129 565-616 (673)
122 PF08070 DTHCT: DTHCT (NUC029) 58.7 17 0.00036 36.3 4.9 16 1446-1462 80-95 (96)
123 COG3852 NtrB Signal transducti 55.8 9.8 0.00021 45.1 3.2 74 78-169 241-327 (363)
124 KOG0787 Dehydrogenase kinase [ 55.2 17 0.00036 44.2 5.0 51 77-127 259-316 (414)
125 KOG0019 Molecular chaperone (H 51.6 12 0.00026 47.7 3.3 126 82-219 61-203 (656)
126 PLN03128 DNA topoisomerase 2; 48.3 14 0.00031 51.2 3.5 138 1024-1175 986-1135(1135)
127 KOG0020 Endoplasmic reticulum 42.1 43 0.00093 41.8 5.8 148 82-236 99-264 (785)
128 COG0643 CheA Chemotaxis protei 40.2 26 0.00057 46.6 4.0 43 86-128 440-493 (716)
129 KOG2002 TPR-containing nuclear 39.2 2.1E+02 0.0045 39.1 11.6 23 486-508 362-385 (1018)
130 PF14812 PBP1_TM: Transmembran 37.1 11 0.00024 36.3 0.0 6 1449-1454 21-26 (81)
131 PF08317 Spc7: Spc7 kinetochor 33.9 5.4E+02 0.012 31.2 13.4 40 1024-1063 134-176 (325)
132 COG3275 LytS Putative regulato 33.5 66 0.0014 40.5 5.6 45 82-126 460-507 (557)
133 PRK13711 conjugal transfer pro 29.2 32 0.00068 33.2 1.6 19 854-872 27-47 (113)
134 PF11395 DUF2873: Protein of u 29.0 38 0.00081 27.9 1.7 22 533-556 11-32 (43)
135 PF00521 DNA_topoisoIV: DNA gy 27.4 5E+02 0.011 32.7 12.0 100 1031-1187 307-406 (426)
136 cd00187 TOP4c DNA Topoisomeras 26.6 2.4E+02 0.0051 35.8 9.0 105 1022-1158 324-428 (445)
137 smart00787 Spc7 Spc7 kinetocho 26.2 1.1E+03 0.023 28.7 13.9 41 1025-1065 130-173 (312)
138 COG4251 Bacteriophytochrome (l 25.8 82 0.0018 40.9 4.7 79 80-174 638-718 (750)
139 KOG3402 Predicted membrane pro 25.5 44 0.00096 32.7 1.8 21 533-553 59-79 (101)
140 PF13662 Toprim_4: Toprim doma 24.7 54 0.0012 31.1 2.3 9 521-529 46-54 (81)
141 COG2865 Predicted transcriptio 24.6 1E+02 0.0022 39.1 5.3 46 80-128 272-317 (467)
142 PF09239 Topo-VIb_trans: Topoi 24.1 6.4E+02 0.014 27.7 10.2 85 279-373 34-124 (160)
143 PRK12758 DNA topoisomerase IV 23.7 7.3E+02 0.016 34.1 12.8 26 1036-1061 337-362 (869)
144 PF01486 K-box: K-box region; 23.4 2.1E+02 0.0045 28.5 6.2 55 1123-1186 9-63 (100)
145 PF10168 Nup88: Nuclear pore c 21.7 1.4E+03 0.03 31.0 15.0 21 1166-1186 633-653 (717)
146 PRK04017 hypothetical protein; 21.2 23 0.00049 37.4 -1.0 28 520-575 64-91 (132)
147 PF10309 DUF2414: Protein of u 21.0 91 0.002 28.9 2.8 35 629-663 7-43 (62)
No 1
>PLN03237 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=0 Score=3448.55 Aligned_cols=1419 Identities=78% Similarity=1.180 Sum_probs=1281.3
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCcchhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHh
Q 000459 5 KRLPLTTSNNANVVGP---TAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYK 81 (1484)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~k 81 (1484)
.+.||++|+++|+++. ..++++++++||+|+||||||+|||||||||+..++.||||+ .++|++++|+|+|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~--~~~m~~~~v~~vpGL~k 80 (1465)
T PLN03237 3 EKLPLQESNSANVAAAPAASSGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYE--TDKMVQRSVTYVPGLYK 80 (1465)
T ss_pred cccccccCcccccccCcccccCCCcHHHhhhccccchHHhcCCCCEeCCCCcccceeeeec--cccceeeeccccchhhh
Confidence 5889999999998854 346799999999999999999999999999999999999995 47999999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCcc
Q 000459 82 IFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRN 161 (1484)
Q Consensus 82 i~dEIL~Na~De~~~~~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlh 161 (1484)
||||||+||+||++|+|+|+.|+|+||.++|+|||+||||||||++|+++|+|+||||||+||||||||+++|++|||||
T Consensus 81 ifdEIldNAvDe~~r~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlh 160 (1465)
T PLN03237 81 IFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRN 160 (1465)
T ss_pred hHHHHhhhhHhHHhhcCCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeecccc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHH
Q 000459 162 GYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKR 241 (1484)
Q Consensus 162 GvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~R 241 (1484)
|||+|||||||+||+|+|+|+++|++|+|+|++||+++..|+++.+...++||+|+||||++||+++.|++|+++++.+|
T Consensus 161 GVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~PD~eiF~~~~fd~D~l~~~~rR 240 (1465)
T PLN03237 161 GYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDLAKFNMTHLEDDVVALMKKR 240 (1465)
T ss_pred ccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEEEECHHHhCCceEcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887765457999999999999999999999999999999
Q ss_pred HHHhhcccCCceEEEeCCcccCcccHHHHHhhcCCC--------CcceeeeecceEEEEEEecCCceeEEEEecccccCC
Q 000459 242 VVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKS--------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIK 313 (1484)
Q Consensus 242 l~dlA~~Ln~glkI~lnder~~~kgf~dYv~~~~~~--------~~~i~~~~~~~~EVAl~~s~~~~~~~SFVN~I~T~~ 313 (1484)
++|||++||+||+|+|||+|...+||++||++|++. .+++|+..+.+|||||+|++++++++||||||+|++
T Consensus 241 lrdLAa~LnkGlkI~LndeR~~~~G~kdYV~~yl~~~~k~k~~~~~~i~e~~~~~~EVAl~~sd~~~~~~SFVNnI~T~~ 320 (1465)
T PLN03237 241 VVDIAGCLGKTVKVELNGKRIPVKSFSDYVDLYLESANKSRPENLPRIYEKVNDRWEVCVSLSEGQFQQVSFVNSIATIK 320 (1465)
T ss_pred HHHHHhccCCCcEEEEEecCCCCCCHHHHHHHHhhcccccCCCCCCccEecCCCeEEEEEEEeCCCceEEEEECcccCCC
Confidence 999996699999999999998888999999987642 234666668899999999998899999999999999
Q ss_pred CcchhHhHHHHHHHHHHHHHHhccCCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhH
Q 000459 314 GGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKV 393 (1484)
Q Consensus 314 GGTHv~gf~~aLt~~i~~~~~kk~K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~ 393 (1484)
|||||+||+++|+++|++++++|+|+.+++++|||+||++||||+|+||+|+||||++|+|+++.|+++|.+++.|++..
T Consensus 321 GGTHv~g~~~aIt~~l~~~~~kK~k~~~l~~~DIregL~a~IsvkI~nP~FesQTKekLtn~~~~f~s~l~l~~~flk~~ 400 (1465)
T PLN03237 321 GGTHVDYVTNQIANHVMEAVNKKNKNANIKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKV 400 (1465)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhCcEEEEEEeCCCCccCCcccCcccChHHHHHHHhccCHHHHhHH
Confidence 99999999999999999999887776789999999999999999999999999999999999999999999999999987
Q ss_pred HhhHHHHHHHHHHhhhchHHHhhcccCCCCCcCCCCCccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceee
Q 000459 394 TAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFG 473 (1484)
Q Consensus 394 ~~~~~Ive~il~~a~~r~~~~~kk~~~~kk~~l~gipKL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qa 473 (1484)
.++.|+++++.+|++|++++++|++++++.++.++|||+||+.||++++++|||||||||||||||+|||+|+||+|||
T Consensus 401 -~~~~Ivekil~~A~ak~arel~k~k~~k~~~~~~ipKL~Dc~~aG~kd~~~ceLfLvEGDSAgGsAk~GR~vvdR~~qa 479 (1465)
T PLN03237 401 -MKSGIVENLLSWADFKQSKELKKTDGAKTTRVTGIPKLEDANEAGGKNSEKCTLILTEGDSAKALAVAGLSVVGRNYYG 479 (1465)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCcccccccccccCCccccEEEEEecCcCCchhhhhhcccCcccee
Confidence 7889999999999998888887777777677888999999999999999999999999999999999999999999999
Q ss_pred ecccCccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhh
Q 000459 474 VFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFC 553 (1484)
Q Consensus 474 v~PLrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1484)
|||||||||||++|+.+||++|+||++|++||||++|.+|+|+++|||||||||||
T Consensus 480 IlPLRGKILNV~kAs~~kil~N~EI~~ii~aLGlgig~~y~d~~~LRYgkIiIMTD------------------------ 535 (1465)
T PLN03237 480 VFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQYESVKSLRYGHLMIMTD------------------------ 535 (1465)
T ss_pred eeccCCceehhccCcHHhhhcchHHHHHHHHhCCCcCcccCcccccccCcEEEEeC------------------------
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEcc-CCeEEEEcChhhHHHHHHHhCCCCCccceEEe
Q 000459 554 FMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK-NGKVLSFYSMPDYEAWKESLGGNASSWSIKYY 632 (1484)
Q Consensus 554 ~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~k-g~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~ 632 (1484)
||||||||+||||||||+|||+||+.+||||+|+||||||+ + |++++||||++||++|+++++++..+|+||||
T Consensus 536 ----ADvDGsHIrgLLLtFF~r~~P~Li~~~Gfl~~~~tPL~Kv~-~~gk~~~~fys~~E~e~w~~~~~~~~~~~~IkyY 610 (1465)
T PLN03237 536 ----QDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKAT-RRGKKVLSFYSMPEYEEWKESLGGNATGWSIKYY 610 (1465)
T ss_pred ----CCCCccHHHHHHHHHHHHhhHHhcccCCEEEEecCCeEEEE-ECCCeeEeecCHHHHHHHHHHhcccCCceeeEee
Confidence 99999999999999999999999997799999999999999 6 99999999999999999987643357999999
Q ss_pred cCCCCCChhhHHHHhhccCccccceEEcCchhHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccccchHHHHHHHHHH
Q 000459 633 KGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELIL 712 (1484)
Q Consensus 633 KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~RK~wi~~~~~~~~ld~~~~~~~~~dfi~~eli~ 712 (1484)
||||||+++|+||||+|++.|.+.|+|++++|.++|+|+|+++++++||+||.+|.|++|||++.+.++|+||||+|||+
T Consensus 611 KGLGe~~~~e~keyf~~~~~h~~~f~~~~~~~~~~i~laF~k~~~d~RK~Wl~~~~~~~~ld~~~~~i~~~dfinkeli~ 690 (1465)
T PLN03237 611 KGLGTSTAKEGKEYFKNLGKHKKDFVWEDEQDGDAIELAFSKKKIEARKNWLRQYEPGTHLDQTQKDVKYSDFVNKELIL 690 (1465)
T ss_pred ccCCCCCHHHHHHHHHhHHhceEEEEECCCCcHHHHHHHhCCccHHHHHHHHHhCCCCccccCCCCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCccccCCCCccceehhhhhcCCCCCCceeEEeeccccccccCCCCcccHHHHHHHhhcccccCCcccccc
Q 000459 713 FSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQ 792 (1484)
Q Consensus 713 ys~~~~~RaIP~~~DGLKP~QRkIL~~~~~~~l~~~~Kva~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~ 792 (1484)
|||+||.|||||++||||||||||||+||++|+++++|||||+|+||+|++|||||+|||+|||+|||+||||||||||+
T Consensus 691 ySm~~i~RAIP~v~DGLKPvQRkILya~~k~~~~~~~KvAqlvG~V~e~~~YHHGd~Sly~tiV~MAQdfvGsnnipLl~ 770 (1465)
T PLN03237 691 FSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVAQLSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLL 770 (1465)
T ss_pred HHHHHHhccCCchhcCCCchHhHHHHHHHhcCCccccchhhhHHHHhhhccCCCcHHHHHHHHHHHhhccccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCcccccCCCCCccCccccCCCCceeeecCCcceeeeeecCCC
Q 000459 793 PNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIP 872 (1484)
Q Consensus 793 ~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP 872 (1484)
|+||||||++||+|||||||||||||++++.||+++|+++|+|+||||+++||+||||+|||||||||+||||||||+||
T Consensus 771 p~GnFGSR~~gG~daAA~RYietrLs~ia~~lf~~~Dd~~l~~~n~Dg~~iEP~~y~piiP~lLVNGa~GIatG~sT~IP 850 (1465)
T PLN03237 771 PNGQFGTRLQGGKDHASARYIFTRLSPITRFLFPKDDDILLDYLNEDGQSIEPTWYMPIIPTVLVNGAEGIGTGWSTFIP 850 (1465)
T ss_pred cCCCCCCCCCCCCcccccccceechhHHHHHHhccCCccccCccCCCCcccCCceecCCCcceeecCCcceecccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCccccCCCcEEEEcccC-CCceEEEEEEEEEEEeCceEEEEecCCCCCHHHHHHHHH
Q 000459 873 NYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASK-EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLE 951 (1484)
Q Consensus 873 ~hNp~eVi~~i~~~L~~~~~~p~~P~~~Gf~G~I~~~~~~-g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~ 951 (1484)
||||+|||+||+++|+|+++.||+|||+||+|+|+..+.+ |+| +|+++|+|+++++++|+||||||++||++|+++|+
T Consensus 851 phNp~eVi~~i~~~i~~e~~~~~~P~~~gf~G~I~~~~~t~g~g-~~~~rG~~~~~~~~~i~ITElP~~~~t~~y~~~le 929 (1465)
T PLN03237 851 NYNPRDIVANIRRLLNGESMEPMHPWYRGFKGTIEKTASKEGGC-TYTITGLYEEVDETTLRITELPIRRWTDDYKEFLE 929 (1465)
T ss_pred CCCHHHHHHHHHHHhcCCCcCCCCCeecCCCceEeEhhhcCCCc-eEEEEEEEEEecCCeEEEEeCCCeecchHHHHHHH
Confidence 9999999999999999999999999999999999988766 777 99999999999999999999999999999999999
Q ss_pred HHHhcC----CccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCccccccCHHHHHH
Q 000459 952 SIIDQN----DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1027 (1484)
Q Consensus 952 ~l~~~~----~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~ 1027 (1484)
++++.. .++|+||+|+|++++|||+|+|+++.+++.++++|+|+|+|+++|+++||+|||++|++|+|+++++||+
T Consensus 930 ~i~~~~~~~k~~~I~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k~~kL~~s~~~~nm~l~d~~G~i~k~~~~~~Il~ 1009 (1465)
T PLN03237 930 SLKTDNNKNKDPFIKDVKAYNDDTTVHFEVILSEENMLAAKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1009 (1465)
T ss_pred HHHHHHhccCcCceeechhccCCceEEEEEEeccchhHHHHHHHHHHhhcCcceeceeEEEEEcCCCCcceeCCHHHHHH
Confidence 887532 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCC
Q 000459 1028 EFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGAT 1107 (1484)
Q Consensus 1028 eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~ 1107 (1484)
+||++|+++|++|+++++.+++.++.++++++|||++||+|+|+|+|++|++|+++|+++||+++++..+....+..+..
T Consensus 1010 ~F~~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~ 1089 (1465)
T PLN03237 1010 EFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLVEELRQKGFTPFPKKAKSVEAAVAGAT 1089 (1465)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHHHHHHHcCCCccchhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887665443332222
Q ss_pred ccccccccCcc--cccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHh
Q 000459 1108 DETEESEENPE--VVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELD 1185 (1484)
Q Consensus 1108 e~~e~~ee~~e--~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~~DLd~f~~~l~~~~ 1185 (1484)
++.++++++.+ ...+....+|||||+||||+||.|++++|++|++++++|++.|+++||++||++||++|+++|++++
T Consensus 1090 ~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~~l~~~t~~~lW~~DLd~f~~~~~~~~ 1169 (1465)
T PLN03237 1090 DDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLD 1169 (1465)
T ss_pred ccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 22111111100 0011223479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh--cCCCCCCCCccccccCCcc--ccccccCCCchhhccc-----cCCCcccccccCCCCcCC-CcC
Q 000459 1186 KSDARAEEERMKIK--GNGNGDAGPKIVAKRAPKN--ARKNDKKSNNARATEA-----MGEMDNVTKVVKPKGRAG-LKK 1255 (1484)
Q Consensus 1186 ~~~~~~~~~~~~~~--~~~~k~~~~k~~~~~~pkk--~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~pk~~~~-~~~ 1255 (1484)
.++++.++.+.+.. +.++..++.|+..+++||+ |+++++++...+.+++ ..++++++++++|+++.+ +++
T Consensus 1170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~v~p~~~~~~~~~ 1249 (1465)
T PLN03237 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKK 1249 (1465)
T ss_pred HHHHHHHHHHHHHHhhhhhcccccccccccccccCCCcccCccccccccchhhcccccccccCCCceeecCccccccccc
Confidence 88877776554332 2222223344466666676 6677777666555432 234468888999999866 567
Q ss_pred CCCCcCCCCCCCcccChHHHHhhhhhhhccccCCCCCCCCCcccccccCCccccCCCchhhhh-hccccc-ccCCCCccc
Q 000459 1256 APAEKLDDDEEDEVPDLKQRLAKLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAA-QKKVVT-VETSDSEDE 1333 (1484)
Q Consensus 1256 ~~~~~~~~~~~~~~~~~~~r~aa~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~r~aa-kk~~~~-~~~~~~~~~ 1333 (1484)
+|+++.+..++++++++++|+|+|+ ++|+|++++.|++.+++.|++ |+++ +++.++ ++.+++
T Consensus 1250 ~pa~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--- 1313 (1465)
T PLN03237 1250 APAAAKEKEEEDEILDLKDRLAAYN-------LDSAPAQSAKMEETVKAVPAR------RAAARKKPLASVSVISDS--- 1313 (1465)
T ss_pred CccccccCcccccHHHHHHHHHhcc-------ccCCCCcccccccccccchhh------hhccccccCCCccccCcc---
Confidence 7777655679999999999999999 999999999888888777763 3443 222232 444432
Q ss_pred ccCCCchhhhhcCcc-----ccccCCCCcccC-cccCCChhhhhcCCCCCCCCcchhhhhhhhhhccCCCCC---CcHHH
Q 000459 1334 IIIDDDEAFEIAAPE-----EGKKGGRKAAGN-SKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPAES---SPEKK 1404 (1484)
Q Consensus 1334 ~~~~~~~~~~~~~~~-----~~~~~~~k~a~~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---sp~~k 1404 (1484)
|||||+++++. .+++|||||||+ .++|+|||++|||+|++.+ .+|.++||||||+|. |||||
T Consensus 1314 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~kk 1384 (1465)
T PLN03237 1314 ----DDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQ-----SGQKLLTEMLKPAEAIGISPEKK 1384 (1465)
T ss_pred ----cccccccchhhcchHHHHHhcCCCcccccCcCCCCCccccCCCcccCC-----CcchhHHHHhchhhcCCCCCccc
Confidence 33355556554 278889999998 6777888888999998543 245599999999988 89999
Q ss_pred hhhhccCCCCcccCCccccCCCCCC----CCCCCCCCccccccCCCCCCCccccccccceeeecCCcccccCCCCCCCCC
Q 000459 1405 VRKMRASPFNKKSGSMLGRAGTIEE----PSGSSPSTSEEVAEVLPPKARPQRANRRQARYVLSDSESEKATDDSEFDED 1480 (1484)
Q Consensus 1405 ~~km~~sp~~kk~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~r~~r~~~~y~~s~s~~~~~~~~~~f~~~ 1480 (1484)
|||||+|||||||||||+|+++.++ .+.+.||++++.+-+.++++|||||||+++.||+||||||++ ||||||+|
T Consensus 1385 ~~~~~~~p~~kk~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~r~~~~~r~~~~~~~~~~e~~~~-d~~df~~~ 1463 (1465)
T PLN03237 1385 VRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESA-DDSDFDDD 1463 (1465)
T ss_pred chhhccCCccccCcchhhcccccccccCccccCCCCcccccccccccCCcchhhhcCCceEEecCcccccc-cccccccc
Confidence 9999999999999999999998764 233444444443445567999999999999999999999955 99999987
Q ss_pred CC
Q 000459 1481 ED 1482 (1484)
Q Consensus 1481 ~~ 1482 (1484)
+|
T Consensus 1464 ~d 1465 (1465)
T PLN03237 1464 ED 1465 (1465)
T ss_pred CC
Confidence 65
No 2
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=100.00 E-value=8.6e-317 Score=3000.45 Aligned_cols=1137 Identities=58% Similarity=0.964 Sum_probs=1054.7
Q ss_pred CCCCcchhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccC---CC
Q 000459 23 PNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRD---PK 99 (1484)
Q Consensus 23 ~~~~~~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~---~~ 99 (1484)
++++++++||+|+||||||+|||||||||+..+++|||||.++++|++++|+|+|||||||||||+||+||++|+ |+
T Consensus 2 ~~~~~~~~yq~L~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~ 81 (1388)
T PTZ00108 2 KNKTVEERYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHR 81 (1388)
T ss_pred CCCChHHhhhcccchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred CCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEE
Q 000459 100 MDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET 179 (1484)
Q Consensus 100 ~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev 179 (1484)
|+.|+|+||.|.|+|||+||||||||++|+++|+|+||||||+||||||||+++|++||||||||+|||||||++|+|+|
T Consensus 82 ~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f~Vev 161 (1388)
T PTZ00108 82 MTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKFTVEC 161 (1388)
T ss_pred ccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceEEEEE
Confidence 99999999998799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCC
Q 000459 180 ADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNG 259 (1484)
Q Consensus 180 ~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnd 259 (1484)
++.+.|+.|+|+|++||+++..|+++.++..++||+|+||||+++|++..|+++++++|++|++++|| ||+||+|+|||
T Consensus 162 ~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~-ln~GLkI~lnd 240 (1388)
T PTZ00108 162 VDSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAG-CFGKLKVYLNG 240 (1388)
T ss_pred EECCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeCHHHcCCCccChHHHHHHHHHHHHHhc-CCCCcEEEEeC
Confidence 95445999999999999888888887664326999999999999999999999999999999999999 78999999999
Q ss_pred cccCcccHHHHHhhcCCC-----Ccce---eeeecceEEEEEEecCCceeEEEEecccccCCCcchhHhHHHHHHHHHHH
Q 000459 260 HRVPVKSFAEYVDMYPKS-----VTRF---HERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMA 331 (1484)
Q Consensus 260 er~~~kgf~dYv~~~~~~-----~~~i---~~~~~~~~EVAl~~s~~~~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~ 331 (1484)
+|+++++|.+|+++|... .+++ ++..+.+|||||+|+++.++++||||+|+|++|||||+||+++|+++|++
T Consensus 241 er~gi~~F~~y~~ly~~~~~~~~~~~~~~~~~~~~~~~eVal~~s~~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~i~~ 320 (1388)
T PTZ00108 241 ERIAIKSFKDYVDLYLPDGEEGKKPPYPFVYTSVNGRWEVVVSLSDGQFQQVSFVNSICTTKGGTHVNYILDQLISKLQE 320 (1388)
T ss_pred ccccHHHHHHHHHhhccCCccCCCCceeeeccccCceEEEEEEEeCCCceEEEEEcccccCCCCCHHHHHHHHHHHHHHH
Confidence 999899999999988643 1222 23357899999999996689999999999999999999999999999999
Q ss_pred HHHhccC-CCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHHhhHHHHHHHHHHhhhc
Q 000459 332 VVNKKNK-NANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK 410 (1484)
Q Consensus 332 ~~~kk~K-~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~~~~~Ive~il~~a~~r 410 (1484)
|++++++ +..++++|||+||++||||+|+||+|+||||++|+|+++.+++.|.+++.|.+++ .++.|+++++.+|++|
T Consensus 321 ~~k~kkk~~~~i~~~dIregl~~~Vs~~i~nP~FdsQTKekL~~~~~~~~~~~~v~e~l~~~l-~~~~Ivekil~~a~aR 399 (1388)
T PTZ00108 321 KAKKKKKKGKEIKPNQIKNHLWVFVNCLIVNPSFDSQTKETLTTKPSKFGSTCELSEKLIKYV-LKSPILENIVEWAQAK 399 (1388)
T ss_pred HHHHhcccCCCCCHHHHHhCcEEEEEEecCCCccCCcccccccChhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 9976543 4689999999999999999999999999999999999999999999999999999 5679999999999999
Q ss_pred hHHHhhcc-cCCCCCcCCCCCccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCccchhhhccch
Q 000459 411 QSKDLKKN-DGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASS 489 (1484)
Q Consensus 411 ~~~~~kk~-~~~kk~~l~gipKL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~ 489 (1484)
++++++++ ..+|+.++.++|||+||+.||++++++|||||||||||||||+|||+|+||+||||||||||||||++|+.
T Consensus 400 ~aa~~ak~~~~~K~~~~~~ipKL~Dc~~aG~k~~~~ceL~lvEGDSAggsAk~Gl~vrdR~~qaVfPLRGKiLNV~kas~ 479 (1388)
T PTZ00108 400 LAAELNKKMKAGKKSRILGIPKLDDANDAGGKNSEECTLILTEGDSAKALALAGLSVVGRDYYGVFPLRGKLLNVRDASL 479 (1388)
T ss_pred HHHHHHHHHhhhhhhcccCchhhhhcccccCCChhhcEEEEEecCcccchhhhcccccCccceeeeccCCcccccccccH
Confidence 87766554 33345556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHH
Q 000459 490 NQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLL 569 (1484)
Q Consensus 490 ~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Ll 569 (1484)
+||++|+||++|++||||+++.+|+|+++||||||||||| ||||||||+|||
T Consensus 480 ~ki~~N~EI~~li~aLGlg~g~~y~d~~~LRYgkIiIMTD----------------------------ADvDGsHIr~LL 531 (1388)
T PTZ00108 480 KQLMNNKEIQNLFKILGLDIGKKYEDPKGLRYGSLMIMTD----------------------------QDHDGSHIKGLL 531 (1388)
T ss_pred hhhhccHHHHHHHHHhCCCcCccccccccCCCCeEEEEeC----------------------------CCCCccHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhhhhhhccCCEEEEeecceeEEEcc-CCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCCChhhHHHHhh
Q 000459 570 INFIHSFWPSLLKIPSFLVEFITPIVKATNK-NGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQ 648 (1484)
Q Consensus 570 l~ff~~~~p~Li~~~g~~~~~~tPl~kv~~k-g~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~ 648 (1484)
|||||+|||+||+.+||||+|+||||||+ + |++++||||++||++|++.++. ++|+||||||||||+++|+||||+
T Consensus 532 lnff~~~~p~Li~~~Gfl~~~~tPl~kv~-k~gk~~~~fys~~E~e~~~~~~~~--~~~~IkyyKGLGe~~~~e~~eyf~ 608 (1388)
T PTZ00108 532 INMIHHFWPSLLKNPGFLKEFITPIVKAT-KKGNQVISFFTIPDFEKWKQTVGL--KGWKIKYYKGLGTSTDKEGKEYFS 608 (1388)
T ss_pred HHHHHHhhHHhcccCCEEEEecCCEEEEE-ECCceeEEecCHHHHHHHHHHcCC--CCCccccccchhhcCHHHHHHHhc
Confidence 99999999999996799999999999999 6 9899999999999999998763 579999999999999999999999
Q ss_pred ccCccccceEEcCchhHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccccchHHHHHHHHHHHHHHhhccccCccccC
Q 000459 649 NITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDG 728 (1484)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~RK~wi~~~~~~~~ld~~~~~~~~~dfi~~eli~ys~~~~~RaIP~~~DG 728 (1484)
||++|.+.|.|.++.+.++++++|+++++++||+||.+|.|++|||++.+.|+|+||||+|||+|||||+.|||||++||
T Consensus 609 ~~~r~~i~~~~~~~~~~~~idl~fgk~~a~~RK~wi~~~~~~~~~d~~~~~i~~~dFvnkEli~FS~~d~~RaIP~v~DG 688 (1388)
T PTZ00108 609 NIDKHRIRFVYVDDSDDDSIDLAFSKKRVEDRKEWITNYKGGTYVDHSKKKLTYSDFVNKELILFSIADNERSIPSLVDG 688 (1388)
T ss_pred ccCceEEEEecCCccHHHHHHHHhCCCChHHHHHHHHhhCccccccccCceecHHHhhhHHHHHHhhhhcccCCCccccC
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceehhhhhcCCCCCCceeEEeeccccccccCCCCcccHHHHHHHhhcccccCCcccccccCCCCcCCCCCCCCcc
Q 000459 729 LKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAA 808 (1484)
Q Consensus 729 LKP~QRkIL~~~~~~~l~~~~Kva~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~A 808 (1484)
||||||||||+||++|+++++|||||+||||+|++|||||+|||+|||+|||+||||||+|||+|+||||||++||+|||
T Consensus 689 LKP~QRkILy~~~k~nl~~~~KvAql~G~V~e~~~YHHGe~Sl~~tiV~MAQ~fvGsnni~Ll~p~GnFGsr~~gG~daA 768 (1388)
T PTZ00108 689 LKPGQRKILFACFKRNLKNEIKVAQLSGYVSEHSAYHHGEQSLQQTIVGMAQNFVGSNNINLLYPCGQFGSRLQGGKDHA 768 (1388)
T ss_pred CCchhhHHHHHHHHcCCCccchHHHHHHHHHhhccCCCChhHHHHHHHHHhcccchhccceeEecCCCcCCCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccHHHhhhCCCCCcCcccccCCCCCccCccccCCCCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHc
Q 000459 809 SARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLN 888 (1484)
Q Consensus 809 a~RYi~~rls~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~ 888 (1484)
||||||||||++|+.||+++|+++|+|++|||+++||+||||+|||||||||+||||||||+||||||+|||+||+++|+
T Consensus 769 A~RYi~trLs~~ar~lf~~~Dd~~l~y~~~Dg~~~EP~~y~piiP~lLvNGa~GIatG~sT~IP~hNp~EVi~~i~~~l~ 848 (1388)
T PTZ00108 769 AARYIFTKLSKITRYIFPEEDDPILDYLEDDGQSVEPFYYVPIIPMVLVNGAEGIGTGFSTSIPNYNPLDIIDNLRRRLN 848 (1388)
T ss_pred hhhhhhhhhhHHHHHHhcccccCccCccCCCCCccCCeeecCccchhhccCCceeEeeeecCCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCcEEEEcccCCCceEEEEEEEEEEEeCceEEEEecCCCCCHHHHHHHHHHHHhcCCcccccccccc
Q 000459 889 GEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYS 968 (1484)
Q Consensus 889 ~~~~~p~~P~~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~~l~~~~~~~I~d~~d~s 968 (1484)
|+++.+|.|||+||+|+|+. +|+| +|+++|+|+++++++|+||||||++||++|+++|++......++|+||+|+|
T Consensus 849 ~e~~~~~~P~~~gf~G~i~~---~g~G-~~~~rG~~~~~~~~~i~ITELP~~~~t~~y~e~l~~~~~~~~~~I~d~~d~s 924 (1388)
T PTZ00108 849 GEEVRPLVPWYRGFKGTIER---NPKG-KFISKGIYEKVPDGTVEITELPIGKWTEDYKEFLESETLKEKDVIVDYRDYS 924 (1388)
T ss_pred CCchhhhcCcCCCCCcEEEe---cCCe-EEEEEEEEEEecCCeEEEEeCCCcccHHHHHHHHHHHHhcCCCcceeeeecc
Confidence 99999999999999999964 4667 9999999999999999999999999999999999983222388999999999
Q ss_pred CCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000459 969 DDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENL 1048 (1484)
Q Consensus 969 ~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl 1048 (1484)
|+++|+|+|+|+++.+++.++++|+|+|+|+++|+++||+|||++|++|+|+++.+||++||+||+++|++|++|+|+++
T Consensus 925 ~~~~v~~~I~l~~~~~~~~~~~~L~k~~kL~~s~~~~Nm~~~d~~g~i~~~~~~~~Il~~f~~~Rl~~y~kR~~~~l~~l 1004 (1388)
T PTZ00108 925 TANTVHFTVKLNDGVLEQWEEEGIEKVFKLKSTISTTNMVLFDENGKIKKYSDALDILKEFYLVRLDLYKKRKEYLLGKL 1004 (1388)
T ss_pred CCCceEEEEEECCCcCHHHHHHHHHHhcCCceeecceeEEEEeCCCCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccHHHHh-hcCCccccccc-cCcccccC--CC
Q 000459 1049 ELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVV-AGATDETEESE-ENPEVVNG--VQ 1124 (1484)
Q Consensus 1049 ~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~-~~~~e~~e~~e-e~~e~~~~--lt 1124 (1484)
+.++++|+|++|||++||+|+|+|.+++|++++.+|.++||++|+...+...... ....++.++++ ++.+.... ..
T Consensus 1005 ~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1388)
T PTZ00108 1005 ERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGA 1084 (1388)
T ss_pred HHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHHHHHHcCCCccchhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999976322221111 11011101111 11010000 01
Q ss_pred hhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000459 1125 SIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERM 1196 (1484)
Q Consensus 1125 ~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~~DLd~f~~~l~~~~~~~~~~~~~~~ 1196 (1484)
..+|||||+||||+||.|++++|++|++++++|++.|++++|++||++||++|+++|+++++.+++......
T Consensus 1085 ~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~~~~~~~~~~~ 1156 (1388)
T PTZ00108 1085 AVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQ 1156 (1388)
T ss_pred hhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 137999999999999999999999999999999999999999999999999999999999986644444333
No 3
>PLN03128 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=9.5e-314 Score=2960.40 Aligned_cols=1123 Identities=72% Similarity=1.155 Sum_probs=1061.1
Q ss_pred CCcchhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEE
Q 000459 25 KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVK 104 (1484)
Q Consensus 25 ~~~~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~ 104 (1484)
+|++++||+|+||||||+|||||||||+..+++||||+.+ +|++++|+|||||||||||||+||+||++|+|+|+.|+
T Consensus 1 ~~~~~~yqk~s~lEhV~~RP~mYIGS~~~~~~~~wv~~~~--~~~~~~v~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~ 78 (1135)
T PLN03128 1 KTIEETYQKKTQLEHILLRPDTYIGSTEKHTQTLWVYEGG--EMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLK 78 (1135)
T ss_pred CCHHHhhhhhcchhHHhcCCCCeeCCCCCccceeeEeccc--ceeeeccccchhHHHHHHHHHHHHHHHhhhcCCCcEEE
Confidence 5789999999999999999999999999999999999964 89999999999999999999999999999999999999
Q ss_pred EEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCC
Q 000459 105 VVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 184 (1484)
Q Consensus 105 V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rd 184 (1484)
|+||.++|+|||+||||||||++|+++|+|+||+|||+||||||||+++|++||||||||+|||||||++|+|+|+|+|+
T Consensus 79 V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~ 158 (1135)
T PLN03128 79 VDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTEFTVETADGNR 158 (1135)
T ss_pred EEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCeEEEEEEECCC
Confidence 99999779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccCc
Q 000459 185 LKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPV 264 (1484)
Q Consensus 185 Gk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~~ 264 (1484)
|++|+|+|++||++...|+++.++.+++||+|+||||+++|++..|+++++++|.+|++|||++||+||+|+|||+|...
T Consensus 159 gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder~~~ 238 (1135)
T PLN03128 159 GKKYKQVFTNNMSVKSEPKITSCKASENWTKITFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKKLPV 238 (1135)
T ss_pred CeEEEEEeCCCcccCCCceeccCCCCCCceEEEEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 99999999999999999988887555799999999999999999999999999999999999769999999999999888
Q ss_pred ccHHHHHhhcCCC------CcceeeeecceEEEEEEecCCceeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhccC
Q 000459 265 KSFAEYVDMYPKS------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNK 338 (1484)
Q Consensus 265 kgf~dYv~~~~~~------~~~i~~~~~~~~EVAl~~s~~~~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk~K 338 (1484)
+||++||++|++. .|++++..+.+|||||+|+++.++++||||+|+|++|||||+||+++|++++++++++|+|
T Consensus 239 ~G~~dyv~~~~~~~~~~~~~~i~~~~~~~~~eva~~~s~~~~~~~SFVN~I~T~~GGTHv~g~~~~i~~~i~~~~~kk~K 318 (1135)
T PLN03128 239 KSFQDYVGLYLGPNSREDPLPRIYEKVNDRWEVCVSLSDGSFQQVSFVNSIATIKGGTHVDYVADQIVKHIQEKVKKKNK 318 (1135)
T ss_pred CCHHHHHHHHhcCCCCCCCCCeEEEecCceEEEEEEEcCCCceEEEEECcEecCCCCchHHHHHHHHHHHHHHHHHHccC
Confidence 9999999987653 2566776778999999999887899999999999999999999999999999999988776
Q ss_pred C-CCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHHhhHHHHHHHHHHhhhchHHHhhc
Q 000459 339 N-ANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKK 417 (1484)
Q Consensus 339 ~-~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~~~~~Ive~il~~a~~r~~~~~kk 417 (1484)
+ .+++++|||+||++||||+|+||+|+||||++|+|+++++++.+.+++.|.+++ .++.|+++++.+|++|++++++|
T Consensus 319 ~~~~l~~~diregL~~vIs~ki~nP~FesQTKekL~s~~~~~~v~~~v~e~~~~~l-~~~~Ivekil~~a~aR~aa~~~k 397 (1135)
T PLN03128 319 NATHVKPFQIKNHLWVFVNCLIENPTFDSQTKETLTTRPSSFGSKCELSEEFLKKV-EKCGVVENILSWAQFKQQKELKK 397 (1135)
T ss_pred CCCCCCHHHHHhCcEEEEEEecCCCcccCcccccccChhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 589999999999999999999999999999999999999999999999999999 68899999999999999888777
Q ss_pred ccCCCCCcCCCCCccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcHh
Q 000459 418 NDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSE 497 (1484)
Q Consensus 418 ~~~~kk~~l~gipKL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~E 497 (1484)
+.++|++++.++|||+||+.||++++++||||||||||||||||||++|+||+||||||||||||||++|+.+||++|+|
T Consensus 398 ~~~~kk~~~~~ipKL~Dc~~ag~k~~~~ceLflvEGDSAggsAk~Gl~~rdR~~qaIlPLRGKiLNV~ka~~~ki~~N~E 477 (1135)
T PLN03128 398 KDGAKRQRLTGIPKLDDANDAGGKKSKDCTLILTEGDSAKALAMSGLSVVGRDHYGVFPLRGKLLNVREASHKQIMKNAE 477 (1135)
T ss_pred HHhhccCCCCCCcccccccccCCCChhHcEEEEEecCCCCcchhhcccccCccceeeeccCCceeccccCCHHHHhcchH
Confidence 77778888888999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcc--CcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHh
Q 000459 498 IGNIKKILGLKQGVEY--NNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHS 575 (1484)
Q Consensus 498 i~~i~~~lG~~~~~~~--~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~ 575 (1484)
|++|++||||+++.+| +|+++||||||||||| ||||||||+||||||||+
T Consensus 478 I~~li~alG~~~g~~~~~~d~~~LRYgkIiIMTD----------------------------aDvDGsHIr~LLltff~~ 529 (1135)
T PLN03128 478 ITNIKQILGLQFGKTYDEENTKSLRYGHLMIMTD----------------------------QDHDGSHIKGLIINFFHS 529 (1135)
T ss_pred HHHHHHHhCCCcCccccccChhhcccCeEEEEeC----------------------------CCCCcchhHHHHHHHHHH
Confidence 9999999999999988 6899999999999999 999999999999999999
Q ss_pred hhhhhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCCChhhHHHHhhccCcccc
Q 000459 576 FWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKK 655 (1484)
Q Consensus 576 ~~p~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~ 655 (1484)
|||+||+.+||||+|+||||||+ +|+++.||||++||++|++++++..++|+||||||||||+++|+||||+|++.|.+
T Consensus 530 ~~p~Li~~~G~l~~~~tPl~kv~-~gk~~~~~~s~~e~~~~~~~~~~~~~~~~ikyyKGLGe~~~~e~~e~f~~~~~~~~ 608 (1135)
T PLN03128 530 FWPSLLKIPGFLVEFITPIVKAT-KGGKSLSFYTMPEYEAWKESLEGETKGWTIKYYKGLGTSTSEEAKEYFSNLDIHKK 608 (1135)
T ss_pred hCHHhhccCCeEEEccCCEEEEE-cCCeeEecCCHHHHHHHHHhhcccCCCccceeecccccCCHHHHHHHHHhHHHhEE
Confidence 99999997799999999999999 89889999999999999998765325799999999999999999999999999999
Q ss_pred ceEEcCchhHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccccchHHHHHHHHHHHHHHhhccccCccccCCCCccce
Q 000459 656 DFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRK 735 (1484)
Q Consensus 656 ~~~~~~~~~~~~~~~~f~~~~~~~RK~wi~~~~~~~~ld~~~~~~~~~dfi~~eli~ys~~~~~RaIP~~~DGLKP~QRk 735 (1484)
.|+|++++|+++|+|||+++++++||+||.+|.|++|||++.+.++|+||||+|||+|||+++.|||||++|||||||||
T Consensus 609 ~f~~~~~~~~~~i~~aF~k~~~~~RK~Wl~~~~~~~~~d~~~~~i~~~dfi~~eli~fs~~~~~RaiP~v~DGLKPvQRk 688 (1135)
T PLN03128 609 EFLWQSDEDGDLIDMAFSKKRVEDRKIWLNNYEPGTFLDQTGNGISYSDFINKELILFSQADLARSIPSMVDGLKPSQRK 688 (1135)
T ss_pred EEEeCCCCcHHHHHHhcCCCcHHHHHHHHHhCCCCccccCCCccccHHHHHHHHHHHHHHHHhcCCCCchhcCCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhhcCCCCCCceeEEeeccccccccCCCCcccHHHHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccc
Q 000459 736 ILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFT 815 (1484)
Q Consensus 736 IL~~~~~~~l~~~~Kva~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~ 815 (1484)
|||+||++|+++++|||||+|+|++|++|||||+|||+|||+||||||||||||||+|+||||||++||+||||||||||
T Consensus 689 ILy~~~~~~~~~~~Kva~l~G~V~e~~~YHHGd~Sl~~tiV~mAQ~f~Gsnn~~Ll~~~GnFGSr~~~G~~aAa~RYi~~ 768 (1135)
T PLN03128 689 VLFACFKRNLKSEIKVAQLSGYVAEHSAYHHGEASLASTIIGMAQDFVGSNNINLLTPSGQFGTRLQGGKDAASARYIFT 768 (1135)
T ss_pred HHHHHHhcCCCccchHHHHHHHHhhccCCCCChHHHHHHHHHHhhhccccccceeeccCCCCCCCCCCCChhhhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHhhhCCCCCcCcccccCCCCCccCccccCCCCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCCCC
Q 000459 816 RLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPM 895 (1484)
Q Consensus 816 rls~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~p~ 895 (1484)
|||++|+.||+++||.+|+|+||||+.+||+||||+|||||||||+||||||||+||||||.|||+||+++|+|+++.+|
T Consensus 769 rLs~ia~~lf~~~dd~~l~y~~~Dg~~~EP~~~~p~iP~lLvNGs~GIa~G~aT~IPphN~~evi~~~~~~i~~~~~~~l 848 (1135)
T PLN03128 769 RLSPITRALFPKDDDVLLNYLNEDGQSIEPEWYCPIIPMVLVNGSEGIGTGWSTFIPNYNPRDIIANIRRLLRGEELEPM 848 (1135)
T ss_pred hhhHHHHHHhccccccccCCcCCCccccCCceecccchhhhccCCcccccccccCCCCCCHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcEEEEcccCCCceEEEEEEEEEEEeCceEEEEecCCCCCHHHHHHHHHHHHhc---CCccccccccccCCCc
Q 000459 896 HPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQ---NDSFIRGFRQYSDDTT 972 (1484)
Q Consensus 896 ~P~~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~~l~~~---~~~~I~d~~d~s~~~~ 972 (1484)
.|||+||+|.|+..+.||+| +|+++|++++.++++|+||||||++||++|+++|+.+++. +.++|+||+|+|++++
T Consensus 849 ~p~~~g~~G~i~~~~~tg~g-~~~~~g~~~~~~~~~i~ItElP~~~~~~~y~~~l~~l~~~~~k~~~~I~d~~d~s~~~~ 927 (1135)
T PLN03128 849 HPWYRGFKGTITEVSTSRSG-SYTVTGIIEQIGDTTIRITELPVRKWTQDYKEFLEALLTGTKKKEPEIKDFKENHTDTT 927 (1135)
T ss_pred HhhccCCCceEEEccccCCc-eEEEEEEEEEecCcEEEEEecCCccchHHHHHHHHHHHhhhccCCcceeeeeeccCCCc
Confidence 99999999999999888988 9999999999888999999999999999999999999753 2789999999999999
Q ss_pred eEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000459 973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELEL 1052 (1484)
Q Consensus 973 v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l 1052 (1484)
|+|+|+|+++.+++.++++|+|+|+|+++|+++||+|||++|+|++|.++++||++||+||+++|+||++|++++++.++
T Consensus 928 v~~~i~l~~~~~~~~~~~~l~k~~~L~~~~~~~nm~l~d~~~~i~ky~~~~~il~~f~~~R~~~y~kRk~~~l~~~~~~~ 1007 (1135)
T PLN03128 928 VHFTVTLSEEKMARALAEGLEKKFKLSTTISTSNMHLFDKDGKIKKYDSPEDILEEFFHLRLDLYVKRKEVLLENLEYEL 1007 (1135)
T ss_pred eEEEEEECcchhHHHHHHHHHhhcceehhcCceEEEEECCCCcccCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHH
Q 000459 1053 LKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLL 1132 (1484)
Q Consensus 1053 ~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL 1132 (1484)
++|+++++||.+|++++|+|++++|++++.+|.++||++++...+.......+..+ .++++++.+. ......+|+|||
T Consensus 1008 ~~l~~k~~fi~~v~~~~~~i~~~~k~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~yLL 1085 (1135)
T PLN03128 1008 KKLDNKARFILAVVKGEIVVNNRKRAELLAELEEKGFDKFPKTAKISETNVVGDRD-GEASEEEEAS-DNELAKSYDYLL 1085 (1135)
T ss_pred HHHHHHhHHHhheecceEEEcCCCHHHHHHHHHHcCCCCcchhhhhcccccccccc-ccccchhhhc-ccccccchHHHH
Confidence 99999999999999999999999999999999999999886443322211111111 1111111111 112335799999
Q ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHH
Q 000459 1133 SMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLD 1182 (1484)
Q Consensus 1133 ~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~~DLd~f~~~l~ 1182 (1484)
+||||+||.|++++|++|+++++++|++|+++||++||++||++|+++|+
T Consensus 1086 ~M~l~~LT~e~~~kL~~e~~~~~~ei~~l~~~t~~~~w~~DLd~~~~~~~ 1135 (1135)
T PLN03128 1086 GMPISSLTLEKVDELRAERAKKETEVEELKKTTPEDLWRKDLDAFEEALD 1135 (1135)
T ss_pred hCHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999874
No 4
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-204 Score=1828.27 Aligned_cols=833 Identities=65% Similarity=1.046 Sum_probs=801.4
Q ss_pred CCcchhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEE
Q 000459 25 KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVK 104 (1484)
Q Consensus 25 ~~~~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~ 104 (1484)
.++++.||+.+++|||++||++||||++++++.||||++++++|+++ +|+|||||||||||+||+| ++|+..|+.|.
T Consensus 2 l~~~~~yqkks~~ehiL~rPdtyig~ve~~~~~~wv~~~e~~k~~~~--t~~pGl~ki~dEilvNaad-k~rd~~m~~i~ 78 (842)
T KOG0355|consen 2 LSIEDIYQKKSQLEHILLRPDTYIGSVEPTEQLMWVYDMEKRKMVQR--TYVPGLYKIFDEILVNAAD-KQRDPKMNTIK 78 (842)
T ss_pred ccHHHHHhhhhhhhhhhcCCcccccccccceeEEeeeccccCceeEe--ecCCcHHHHHHHHhhcccc-cccCCCcceeE
Confidence 57899999999999999999999999999999999999999999999 9999999999999999999 99999999999
Q ss_pred EEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCC
Q 000459 105 VVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 184 (1484)
Q Consensus 105 V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rd 184 (1484)
|+||++.|.|+|+|||+||||++||.+++|+||||||+||||+||+|++.|++||+||||++|+|+||+.|+|||+|++.
T Consensus 79 v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~ 158 (842)
T KOG0355|consen 79 VTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREY 158 (842)
T ss_pred EEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccccCCCccccccCCCccceeeeeeccccceeeeeehHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccCc
Q 000459 185 LKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPV 264 (1484)
Q Consensus 185 Gk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~~ 264 (1484)
++.|+|+|.+||+....|.+.... ++.||+|||+||++.|.|..||.|++++|.+|++++|+++ .++++++||+++++
T Consensus 159 ~~~~kQ~w~~nm~~~~~~~i~~~~-~~~yTkitF~PDl~~F~m~eLD~Div~l~~rr~~d~a~~~-~~vkv~ln~~~~~~ 236 (842)
T KOG0355|consen 159 KMAFKQTWINNMTRDEEPKIVPST-DEDYTKITFSPDLEKFKMKELDDDIVALMARRAYDLAGSV-KSVKVELNGKNIPV 236 (842)
T ss_pred HHHHHHhhhcCCcccCCceeecCC-CCCcceEEeCcChHhcCchhhcchHHHhHHhhhhhhcccc-cceeeeecCCCCcc
Confidence 999999999999999999888764 3459999999999999999999999999999999999988 99999999999999
Q ss_pred ccHHHHHhhcCCC------CcceeeeecceEEEEEEecCCceeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhcc-
Q 000459 265 KSFAEYVDMYPKS------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKN- 337 (1484)
Q Consensus 265 kgf~dYv~~~~~~------~~~i~~~~~~~~EVAl~~s~~~~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk~- 337 (1484)
+||.+|+.+|... ..++|+..+.|||||++.++.+|+++||||+|+|.+|||||+++++++++.|+..++|++
T Consensus 237 ~~f~~yv~~~~~~~~~~~~~~~ihe~~~~RwEv~~a~s~~~fqqisfvNsI~T~kGGThVd~V~D~iv~~l~~vvkKk~~ 316 (842)
T KOG0355|consen 237 KGFYDYVKMYLEVLWLNDDLKPLHEVLNFRWEVALALSDVGFQQVSFVNSIATTKGGTHVDYVVDQIVAKLIDVVKKKKV 316 (842)
T ss_pred chHHHHHhhccccccccCcchhhhcccchHHHHhhhccccccceeeeecceeecCCCcccchhhhhHHHHHHHHhccccc
Confidence 9999999999841 356788889999999999999999999999999999999999999999999999998865
Q ss_pred -CCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHHhhHHHHHHHHHHhhhchHHHhh
Q 000459 338 -KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLK 416 (1484)
Q Consensus 338 -K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~~~~~Ive~il~~a~~r~~~~~k 416 (1484)
++.++++.+|++|||+||||.|+||.|+||||++|+++...|++.|.+++.|.+.+..+ .|++.+++++.+....++.
T Consensus 317 ~~~~svk~f~vkn~L~vfVN~lIENPtFesQTke~lt~~~~~fgs~~elsek~~k~~~~~-~i~esils~s~~~~~~dL~ 395 (842)
T KOG0355|consen 317 KKDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKRFGSDCELSEKFTKAIELK-GVVESILSKSLNKYKDDLA 395 (842)
T ss_pred ccccccchhhhhcceEEEEEEEecCccccccchhhcccccccccceEeehhHHHHHHHhC-chHHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999555 5999999999988877787
Q ss_pred cccCCCCCcCCCCCccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcH
Q 000459 417 KNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNS 496 (1484)
Q Consensus 417 k~~~~kk~~l~gipKL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~ 496 (1484)
++.++..++..+||||.|++.+|++.+..|+|+++|||||+.+|.+|+++++|++|+|||||||+|||++++.+|+++|+
T Consensus 396 kk~~~~~s~~e~I~KleDa~~ag~k~s~kctlIltEgdsaksLavsGl~vvgRd~~gVfplrgklLNv~e~s~kqilkn~ 475 (842)
T KOG0355|consen 396 KKRGKLTSRSKGIPKLEDANDAGTKTSEKCTLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHKQILKNA 475 (842)
T ss_pred hhhhhhhccccchhHhhhcccccccccccceeEEeccccchhheecccccccceeEeecccccchhhhHHHHHHHHHHHH
Confidence 77766666777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHhh
Q 000459 497 EIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSF 576 (1484)
Q Consensus 497 Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~ 576 (1484)
||++|+.|||+++...|++.++|||||+||||| ||+|||||+||||||||+|
T Consensus 476 EI~aIikIlgl~~~~~y~~~eslryg~~mimtD----------------------------Qd~dgshikgllInf~~~~ 527 (842)
T KOG0355|consen 476 EINAIIKILGLQYKKKYFDVESLRYGKLMIMTD----------------------------QDHDGSHIKGLLINFIHHF 527 (842)
T ss_pred HHHHHHHHHHHHHhhhhccccccchhheEeeec----------------------------cccccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCCChhhHHHHhhccCccccc
Q 000459 577 WPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKD 656 (1484)
Q Consensus 577 ~p~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~ 656 (1484)
||+||.. +||++|+|||+|++ +|++..+|||++||++|++...+ +.+|.||||||||||+++|+||||+|+++|.+.
T Consensus 528 ~psl~~~-~fleefitpi~k~~-~~~~~~~fys~pey~kw~~~~~~-~~~~~ikyykglgts~~~e~keyf~~~~~h~~~ 604 (842)
T KOG0355|consen 528 WPSLLQI-PFLEEFITPIVKAT-KGKQEVSFYSLPEYEKWKKNTDN-WKSWKIKYYKGLGTSTSKEAKEYFSDLDRHRIL 604 (842)
T ss_pred hHHhhcC-CcceecCCcceEec-cCCcceeeeccHHHHHHHhcCcc-ccccceEEeecCCcccHHHHHHHhcCcchheEE
Confidence 9999998 59999999999999 89999999999999999998776 578999999999999999999999999999999
Q ss_pred eEEcCchhHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccccchHHHHHHHHHHHHHHhhccccCccccCCCCcccee
Q 000459 657 FVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKI 736 (1484)
Q Consensus 657 ~~~~~~~~~~~~~~~f~~~~~~~RK~wi~~~~~~~~ld~~~~~~~~~dfi~~eli~ys~~~~~RaIP~~~DGLKP~QRkI 736 (1484)
|.+.+..|.++|+++|+++++++||+||.++.+ .++++..+.++|+||+ +|||+||+++ |||+++|||||+||||
T Consensus 605 F~~~~~~d~~~i~~af~k~k~~~rk~wL~~~~~-~~~~~~~~~v~~sdf~-~elilf~~~~---sIp~~~dglkpgqRkv 679 (842)
T KOG0355|consen 605 FKYDGGIDDEAIDMAFSKKKIDARKEWLRKYMP-EYLYKTTKFVTISDFV-KELILFSNAD---SIPSLVDGLKPGQRKV 679 (842)
T ss_pred EeccCcchHHHHhhhcccccHHHHHHHHHHHhH-HhcccccceeEHHHHH-HHHHHHHhcc---ccHhHHhccCccchhh
Confidence 999999999999999999999999999999998 6667889999999999 9999999999 9999999999999999
Q ss_pred hhhhhcCCCCCCceeEEeeccccccccCCCCcccHHHHHHHhhcccccCCcccccccCCCCcCCCCCCCCcccccccccc
Q 000459 737 LFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTR 816 (1484)
Q Consensus 737 L~~~~~~~l~~~~Kva~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~r 816 (1484)
||+||++|++.|.|||||+|+|++.++|||||+||..|||+|||+||| +|||++|||||+
T Consensus 680 ~~~~~k~n~~~E~Kv~ql~g~v~~~s~yhhge~sl~~ti~~l~q~~~g--------------------kdaa~~ryi~t~ 739 (842)
T KOG0355|consen 680 LFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQSLMSTIVNLAQDFVG--------------------KDAASARYIFTK 739 (842)
T ss_pred hhhhhhhcCCCceeEeeecchHHHHHHhhcccHhHHHHHHHHHHhhcC--------------------CcchhhHHHHHh
Confidence 999999999999999999999999999999999999999999999986 799999999999
Q ss_pred ccHHHhhhCCCCCcCcccccCCCCCccCccccCCCCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCCCCC
Q 000459 817 LSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMH 896 (1484)
Q Consensus 817 ls~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~p~~ 896 (1484)
||+.||.+|+..||.+|.|+|+||+.+||+ |+||||||||||++||||||||+||+|||+||+.+++++|+|+++.+|.
T Consensus 740 l~~~tr~~f~~~dd~ll~~~~~~~~~vep~-y~pi~p~vlvngaegiGtGws~~i~n~n~~~iv~~~r~~~~~~~~~~~~ 818 (842)
T KOG0355|consen 740 LSPLTRLLFPPADDLLLKYLNEDGQRVEPE-YCPIIPMVLVNGAEGIGTGWSTFIPNYNPREIVKNIRRLINGEPPKAMA 818 (842)
T ss_pred cChhhhhcCCCCchhHhhhhccCCcCcCcc-cccceeEEEeeccccccCCccccCCCCCHHHHHHHHHHhhcCCCcccCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEcccCCCceEEEEEEEE
Q 000459 897 PWYRGFGGTIEKTASKEAGVTYTVTGII 924 (1484)
Q Consensus 897 P~~~Gf~G~I~~~~~~g~G~~~~~~G~~ 924 (1484)
|||++|+|+|+.+... +|.+.|.+
T Consensus 819 p~yr~frg~i~~~~~~----~y~~~g~i 842 (842)
T KOG0355|consen 819 PWYRNFRGTIEVIAPS----RYAISGEI 842 (842)
T ss_pred chhhhcceEEEEeccC----ceEEEeeC
Confidence 9999999999998762 69999864
No 5
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-170 Score=1509.17 Aligned_cols=595 Identities=29% Similarity=0.427 Sum_probs=534.7
Q ss_pred CCcchhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEE
Q 000459 25 KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVK 104 (1484)
Q Consensus 25 ~~~~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~ 104 (1484)
.-.+++||+|+||||||||||||||||+.. +|||||||||||||+||+++ |+|+.|.
T Consensus 5 ~Y~a~~I~vL~GLEaVRkRPGMYIGst~~~----------------------~GLhHlv~EVvDNsiDEala-G~~~~I~ 61 (635)
T COG0187 5 NYDASSIQVLEGLEAVRKRPGMYIGSTGDG----------------------RGLHHLVWEVVDNSIDEALA-GYADRID 61 (635)
T ss_pred cCCHhHceeccCcHHhhcCCCceeccCCCC----------------------CcceeeEeEeeechHhHHhh-CcCcEEE
Confidence 345689999999999999999999999963 69999999999999999997 7999999
Q ss_pred EEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCC
Q 000459 105 VVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 184 (1484)
Q Consensus 105 V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rd 184 (1484)
|+||.| |+|||.||||||||++||++++|++|+|||+||||||||+++|++||||||||+|||||||+||+|+|+ |+
T Consensus 62 V~l~~d-~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l~v~v~--r~ 138 (635)
T COG0187 62 VTLHED-GSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWLEVEVK--RD 138 (635)
T ss_pred EEEcCC-CeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceEEEEEE--EC
Confidence 999976 899999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred CeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccC-
Q 000459 185 LKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP- 263 (1484)
Q Consensus 185 Gk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~- 263 (1484)
|+.|+|.|++|+++.+.++++.|...++||+|+||||+++|+++.|++++| ++|++++|| ||+||+|+|+|+|..
T Consensus 139 gk~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l---~~RlrelA~-L~~gl~I~l~d~r~~~ 214 (635)
T COG0187 139 GKIYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEIL---KRRLRELAF-LNKGVKITLTDERTGE 214 (635)
T ss_pred CEEEEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHH---HHHHHHHhc-cCCCCEEEEEeccCCc
Confidence 999999999999998888888776778999999999999999999999985 599999999 999999999999985
Q ss_pred -------cccHHHHHhhcCCC-----Ccceee---eecceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHH
Q 000459 264 -------VKSFAEYVDMYPKS-----VTRFHE---RVNERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVAN 327 (1484)
Q Consensus 264 -------~kgf~dYv~~~~~~-----~~~i~~---~~~~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~ 327 (1484)
..|+++||...... .++++. ..+..|||||+|+++| ++++||||||+|++||||++||+.+|++
T Consensus 215 ~~~~~~y~~Gl~~yv~~l~~~k~~l~~~~~~~~~~~~~~~vEvA~q~~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr 294 (635)
T COG0187 215 EKKEFHYEGGLKDYVEYLNKGKTPLHEEIFYFNGEKDGIAVEVALQWNDGYSENILSFVNNIPTREGGTHEAGFRSALTR 294 (635)
T ss_pred ccceeecccHHHHHHHHHhcCCCccccCceecccCccceEEEEEEEEecCCceEEEEeecCccCCCCchHHHHHHHHHHH
Confidence 24788888866554 122331 2345799999999986 6899999999999999999999999999
Q ss_pred HHHHHHHhccC--CCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHH----hhHHHHH
Q 000459 328 HVMAVVNKKNK--NANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVT----AKSGIVE 401 (1484)
Q Consensus 328 ~i~~~~~kk~K--~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~----~~~~Ive 401 (1484)
+||+|+++++. ...++++||||||++||||+|+||+|+||||+||+|++++..+.+.+++.|..|+. .++.|++
T Consensus 295 ~in~y~~~~~~~k~~~l~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~ 374 (635)
T COG0187 295 AINEYAKKKNLLKEGDLTGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVE 374 (635)
T ss_pred HHHHHHHHhCcCcccCCCHHHHhhccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 99999988642 22399999999999999999999999999999999999999999888888877775 4456788
Q ss_pred HHHHHhhhchHHHhhcccCCCCCc--CCCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccC
Q 000459 402 TLLSWANFKQSKDLKKNDGTKTED--VRGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLR 478 (1484)
Q Consensus 402 ~il~~a~~r~~~~~kk~~~~kk~~--l~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLr 478 (1484)
+++.+|++|+++...++..+|++. .+++| ||+||+ ++++++||||||||||||||||||| ||+||||||||
T Consensus 375 k~i~aa~aR~aarkare~~R~k~~~~~~~LpGKLadC~---skd~~~~ELfiVEGDSAGGSAKqgR---dR~~QAILPLR 448 (635)
T COG0187 375 KAIAAAKAREAARKARELTRRKSALDIPGLPGKLADCT---SKDPEKSELFLVEGDSAGGSAKQGR---DREFQAILPLR 448 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcCcccc---cCCcccceEEEEecCCcchhhhhcc---CccceEEeccc
Confidence 888888888765443333344432 34566 999998 7999999999999999999999999 99999999999
Q ss_pred ccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccC
Q 000459 479 GKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQ 558 (1484)
Q Consensus 479 GKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 558 (1484)
||||||++|+.++|++|+||++|++||||+++.+ +|+++||||||||||| |
T Consensus 449 GKiLNVeka~~~kil~N~EI~~ii~AlG~g~~~~-fd~~~LRY~kIiIMTD----------------------------A 499 (635)
T COG0187 449 GKILNVEKARLDKILKNEEIQTIITALGTGIGKD-FDLEKLRYHKIIIMTD----------------------------A 499 (635)
T ss_pred CcchhhhhccHhhhhhhHHHHHHHHHhCCCCCCC-CChhhCccCcEEEEec----------------------------C
Confidence 9999999999999999999999999999999999 6999999999999999 9
Q ss_pred CCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCC
Q 000459 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTS 638 (1484)
Q Consensus 559 D~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~ 638 (1484)
||||+||++|||||||||||+||+. ||||+|+||||||+ +|+++.|+|++.|++...+.++.. ++|+||||||||||
T Consensus 500 DvDGaHIrtLLlTfFyr~m~~LIe~-G~vyiA~PPLYkv~-~~k~~~Y~~~d~E~~~~~~~~~~~-~~~~IqRyKGLGEM 576 (635)
T COG0187 500 DVDGAHIRTLLLTFFYRYMPPLIEN-GHVYIAQPPLYKVK-KGKKTFYAYDDEELEKLLERLGKK-KGYEIQRYKGLGEM 576 (635)
T ss_pred CCChHHHHHHHHHHHHHHhHHHHHc-CcEEEEcCceEEEE-cCCceeEeCCHHHHHHHHHHhccc-CCceeEeecccCCC
Confidence 9999999999999999999999997 99999999999999 688889999999999888888643 58999999999999
Q ss_pred ChhhHHHHhhccCccccceEEcCchhHHHHHHHhhh---hhhHHHHHhhhccCC
Q 000459 639 TSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK---KKIEARKKWLLQFEP 689 (1484)
Q Consensus 639 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~~~~RK~wi~~~~~ 689 (1484)
+|+|+|||||||+.|+ +++++.+|.+.++.+|+. +++++||+||.++..
T Consensus 577 np~QLwETTmdP~~R~--L~~V~i~da~~ad~~f~~LMGd~ve~Rr~fIe~na~ 628 (635)
T COG0187 577 NPDQLWETTMDPETRR--LLQVTIEDADEADEIFSTLMGDKVEPRRNFIEENAL 628 (635)
T ss_pred CHHHHHHhccCcccee--EEEEEcccHHHHHHHHHHHcCCCchHHHHHHHHHhh
Confidence 9999999999999885 555566677778888886 679999999999853
No 6
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=100.00 E-value=1e-158 Score=1462.86 Aligned_cols=591 Identities=32% Similarity=0.497 Sum_probs=517.4
Q ss_pred hhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccC--CCCCeEEEE
Q 000459 29 EMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRD--PKMDAVKVV 106 (1484)
Q Consensus 29 ~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~--~~~~~I~V~ 106 (1484)
++||+|+++||||+|||||||||+..++.+|||+. +++|+|+|||||||||||+||+||++++ |+|+.|+|+
T Consensus 2 ~~i~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~------~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~ 75 (602)
T PHA02569 2 DEFKVLSDREHILKRPGMYIGSVAYEAHERFLFGK------FTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVT 75 (602)
T ss_pred CceeEccchHHHhcCCCceeCCCCcccccceeecc------cccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEE
Confidence 57999999999999999999999999999999984 7899999999999999999999999973 579999999
Q ss_pred EEccCCEEEEEECCcccccccccC-CC--cccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecC
Q 000459 107 IDQEHDLISVHNSGDGVPVEIHQE-EG--VYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGK 183 (1484)
Q Consensus 107 i~~d~gsIsV~DnGrGIPvd~h~~-~~--~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~r 183 (1484)
|+ | |+|||+||||||||++|++ +| +|+||+|||+|||||||| +.|++||||||||+|||||||++|+|+|+ +
T Consensus 76 i~-d-gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd-~~ykvSGGlhGVG~svvNaLS~~~~V~v~--~ 150 (602)
T PHA02569 76 IK-N-NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFD-DTNRVTGGMNGVGSSLTNFFSVLFIGETC--D 150 (602)
T ss_pred Ec-C-CEEEEEECCCcccCCcccccccccccceEEEEEeeccccccC-CcceeeCCcCCccceeeeccchhhheEEE--c
Confidence 99 5 8999999999999999986 66 888899999999999995 67999999999999999999999999997 7
Q ss_pred CCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccC
Q 000459 184 RLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP 263 (1484)
Q Consensus 184 dGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~ 263 (1484)
+|+.|+|+|++||...+.+ ++ ...++||+|+||||++||+++.|+.+...+|.+|++++|| |||||+|+|+|+|..
T Consensus 151 ~~~~~~q~f~~G~~~~~~~-~~--~~~~~GT~V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA~-Ln~Gl~I~l~der~~ 226 (602)
T PHA02569 151 GKNEVTVNCSNGAENISWS-TK--PGKGKGTSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLAV-VFPDIKFTFNGKKVS 226 (602)
T ss_pred CCEEEEEEecCCcccCCcc-cC--CCCCCccEEEEEECHHHhCCCccCccHHHHHHHHHHHHhc-CCCCCEEEEEecCCC
Confidence 8889999999998766544 22 3357999999999999999988987777778899999999 889999999999975
Q ss_pred cccHHHHHhhcCCCCcceeeeecceEEEEEEecCCceeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhccCCCCCC
Q 000459 264 VKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVK 343 (1484)
Q Consensus 264 ~kgf~dYv~~~~~~~~~i~~~~~~~~EVAl~~s~~~~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk~K~~~i~ 343 (1484)
.||.+|++++.. .+++++ +.+|||||+|+++.++++||||+|+|++|||||+||+++|+++|++|++++++ .+++
T Consensus 227 -~g~~~yv~~~~~-~~i~~~--~~~veva~~~~~~~~~~~SFvN~I~T~~GGTHv~gf~~altr~in~~~~kk~~-~~l~ 301 (602)
T PHA02569 227 -GKFKKYAKQFGD-DTIVQE--NDNVSIALAPSPDGFRQLSFVNGLHTKNGGHHVDCVMDDICEELIPMIKKKHK-IEVT 301 (602)
T ss_pred -CCHHHHHHHhCC-CCeEEe--cCcEEEEEEecCCCcEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHhccc-CCCC
Confidence 689999998843 444443 56899999999433578999999999999999999999999999999987543 6899
Q ss_pred hhhHhcceEEEEEEe-ecCCccCCcccccccccccccccccc-cCHHHHHhHHhhHHHHHHHHHHhhhchHHHhhcc--c
Q 000459 344 AHNVKNHLWVFVNAL-IDNPAFDSQTKETLTLRQSSFGSKCE-LSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKN--D 419 (1484)
Q Consensus 344 ~~dIregL~~vVsvk-i~nP~FegQTKekL~n~~~~~~~~~~-l~~~f~~~~~~~~~Ive~il~~a~~r~~~~~kk~--~ 419 (1484)
++|||+||++||||+ |+||+|+||||++|+|++..+++.+. +.+.|.+++..++.++++|+++|..+++++.+++ .
T Consensus 302 ~~diregL~avVsvk~i~~P~FegQTK~kL~~~~~~~~~~v~~~~~~l~~~l~~n~~~~~~i~~~a~~~~~ar~a~~~~k 381 (602)
T PHA02569 302 KARVKECLTIVLFVRNMSNPRFDSQTKERLTSPFGEIRNHIDLDYKKIAKQILKTEAIIMPIIEAALARKLAAEKAAETK 381 (602)
T ss_pred HHHHHhCCEEEEEEeccCCCcccCcccccccCChHHhccceeehHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999998 99999999999999999543333333 3444546665555566666655544333222111 1
Q ss_pred CCCCCcCCCCCccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcHhHH
Q 000459 420 GTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIG 499 (1484)
Q Consensus 420 ~~kk~~l~gipKL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~Ei~ 499 (1484)
.+|+....++|||.+++.+|. +++|||||||||||||||+||| ||+||||||||||||||++|+.++|++|+||+
T Consensus 382 ~~k~~~r~k~~~~~~a~lpGk--~~~~eL~ivEGDSAggsAk~~R---dR~~qaIlPLRGKiLNV~ka~~~ki~~N~Ei~ 456 (602)
T PHA02569 382 AAKKAKKAKVAKHIKANLIGK--DAETTLFLTEGDSAIGYLIEVR---DEELHGGYPLRGKVLNTWGMSYADILKNKELF 456 (602)
T ss_pred hhhhhhhccccccccCCCCCC--CCCceEEEEecCCCCccccccc---CccceeecccCCcccchhhCCHHHhhcchhHH
Confidence 111111124678888998876 8899999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCC-CchhhHHHHHHHhhhh
Q 000459 500 NIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDG-SHIKGLLINFIHSFWP 578 (1484)
Q Consensus 500 ~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DG-sHI~~Lll~ff~~~~p 578 (1484)
+|++||||++|.+| ++||||||||||| ||+|| |||+||||||||| ||
T Consensus 457 ~li~alG~g~g~~~---~~LRY~kIiImTD----------------------------ADvDG~sHIr~LLltff~~-~p 504 (602)
T PHA02569 457 DICAITGLVLGEKA---ENMNYKNIAIMTD----------------------------ADVDGKGSIYPLLLAFFSR-WP 504 (602)
T ss_pred HHHHHhCCCcCccc---cccccCcEEEEec----------------------------CCCcchHHHHHHHHHHHHh-ch
Confidence 99999999999876 3999999999999 99999 9999999999999 99
Q ss_pred hhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCCChhhHHHHhhccCccccceE
Q 000459 579 SLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFV 658 (1484)
Q Consensus 579 ~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~ 658 (1484)
+||+ +||||+|+||||||+ +|+++.||||++||++|++.+ ++|+||||||||||+|+|+|||||||+ ..++
T Consensus 505 ~Li~-~G~v~~~~~Pl~kv~-~gk~~~~~~~~~e~~~~~~~~----~~~~i~~yKGLGe~~~~~~~e~~~~p~---l~~~ 575 (602)
T PHA02569 505 ELFE-QGRIRFVKTPVIIAQ-VGKETKWFYSLDEFEKAKDSL----KKWSIRYIKGLGSLRKSEYRRVINNPV---YDVV 575 (602)
T ss_pred hhcc-CCeEEEecCCEEEEE-cCCeeEEecCHHHHHHHHHhc----CCcceEEeccCCCCCHHHHHHHhcCcc---cEEE
Confidence 9999 499999999999999 899899999999999999865 369999999999999999999999998 5678
Q ss_pred EcCchhHHHHHHHhhhhhhHHHHHhhhc
Q 000459 659 WEDDQDGEAIELAFSKKKIEARKKWLLQ 686 (1484)
Q Consensus 659 ~~~~~~~~~~~~~f~~~~~~~RK~wi~~ 686 (1484)
++++.+.+.++++|++ ++++||+||.+
T Consensus 576 ~~~d~~~~~~~~l~g~-~~~~Rk~wi~~ 602 (602)
T PHA02569 576 VLPDDWKELFEMLFGD-DADLRKDWMSQ 602 (602)
T ss_pred ecCchHHHHHHHHhCC-CchHHHHHhhC
Confidence 8888889999999998 69999999975
No 7
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=1e-156 Score=1452.96 Aligned_cols=587 Identities=26% Similarity=0.393 Sum_probs=516.3
Q ss_pred chhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEE
Q 000459 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVI 107 (1484)
Q Consensus 28 ~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i 107 (1484)
++.||+|++|||||+|||||||||+. +||||||+|||+||+||++ +|+|+.|+|+|
T Consensus 7 ~~~i~~L~glE~VRkRPgMYIGst~~-----------------------~GL~hlv~EIvdNavDE~~-ag~~~~I~V~i 62 (637)
T TIGR01058 7 ADAIKILEGLDAVRKRPGMYIGSTDS-----------------------KGLHHLVWEIVDNSVDEVL-AGYADNITVTL 62 (637)
T ss_pred HHHCeeecccHHHhcCCCCeECCCCc-----------------------chhheehhhhhcchhhhhh-cCCCcEEEEEE
Confidence 37899999999999999999999984 7999999999999999999 58999999999
Q ss_pred EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCCCeE
Q 000459 108 DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKK 187 (1484)
Q Consensus 108 ~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~ 187 (1484)
+.| |+|+|+||||||||++|+++++|+||+|||+||||||||+++|++||||||||+|||||||+||+|+|+ |+|+.
T Consensus 63 ~~d-gsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~~V~v~--r~gk~ 139 (637)
T TIGR01058 63 HKD-NSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWLEVTVK--RDGQI 139 (637)
T ss_pred cCC-CeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceEEEEEE--ECCEE
Confidence 976 899999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEEEecCC-CCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccCc--
Q 000459 188 YKQVFTNNM-GKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPV-- 264 (1484)
Q Consensus 188 y~q~f~~g~-~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~~-- 264 (1484)
|.|+|++|| ++.....++. ..++||+|+||||++||++..|++++ |++|++++|| |||||+|+|+|+|...
T Consensus 140 ~~q~f~~Gg~~~~~l~~~~~--~~~~GT~V~F~PD~~iF~~~~f~~d~---l~~RlrelA~-Ln~GL~I~l~der~~~~~ 213 (637)
T TIGR01058 140 YQQRFENGGKIVQSLKKIGT--TKKTGTLVHFHPDPTIFKTTQFNSNI---IKERLKESAF-LLKKLKLTFTDKRTNKTT 213 (637)
T ss_pred EEEEEecCCcCcCCcccccC--CCCCceEEEEEeCHHHcCCCccCHHH---HHHHHHHHhc-cCCCcEEEEEecCCCceE
Confidence 999999974 3433333433 35699999999999999999999998 5699999999 8899999999998652
Q ss_pred -----ccHHHHHhhcCCC-----Ccceeee--ecceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHHHH
Q 000459 265 -----KSFAEYVDMYPKS-----VTRFHER--VNERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHVMA 331 (1484)
Q Consensus 265 -----kgf~dYv~~~~~~-----~~~i~~~--~~~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~ 331 (1484)
+||.+|++++... .|++|+. .+..||||++|++++ ++++||||+|+|++|||||+||+++|+++|++
T Consensus 214 ~f~~~~Gl~~yv~~l~~~k~~l~~~i~~~~~~~~~~vevAl~~~~~~~e~~~SFvN~I~T~~GGTHv~g~~~aLtr~in~ 293 (637)
T TIGR01058 214 VFFYENGLVDFVDYINETKETLSQVTYFEGEKNGIEVEVAFQFNDGDSENILSFANSVKTKEGGTHENGFKLAITDVINS 293 (637)
T ss_pred EEEcCcCHHHHHHHhcCCCCcCCccEEEEEEECCcEEEEEEEEcCCCCeEEEEeECCccCCCCCcHHHHHHHHHHHHHHH
Confidence 6899999876543 2344543 356899999999886 68999999999999999999999999999999
Q ss_pred HHHhc----cCCCCCChhhHhcceEEEEEEeecCC--ccCCcccccccccccccccccccCHHHHHhHH----hhHHHHH
Q 000459 332 VVNKK----NKNANVKAHNVKNHLWVFVNALIDNP--AFDSQTKETLTLRQSSFGSKCELSEEFLKKVT----AKSGIVE 401 (1484)
Q Consensus 332 ~~~kk----~K~~~i~~~dIregL~~vVsvki~nP--~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~----~~~~Ive 401 (1484)
|++++ +++.+++++|||+||++||||++++| +|+||||++|+|+++++.+.+.+++.|.+++. .++.|++
T Consensus 294 ~~~~~~~lK~~~~~i~~~diregL~~vIsvki~~pnP~FegQTK~kL~n~~v~~~v~~~v~e~l~~~l~~np~~a~~Iie 373 (637)
T TIGR01058 294 YARKYNLLKEKDKNLEGSDIREGLSAIISVRIPEELIQFEGQTKSKLFSPEARNVVDEIVQDHLFFFLEENNNDAKLLID 373 (637)
T ss_pred HHHHhchhccccccCChhhHhhccEEEEEEecCCCcccccCcccccccChhHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 99764 23468999999999999999999755 99999999999999999888888888777774 3678999
Q ss_pred HHHHHhhhchHHHhhcccCCC--CCcC--CCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecc
Q 000459 402 TLLSWANFKQSKDLKKNDGTK--TEDV--RGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFP 476 (1484)
Q Consensus 402 ~il~~a~~r~~~~~kk~~~~k--k~~l--~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~P 476 (1484)
+++.+|++|++++..+...++ ++.+ ..+| ||+||. ++++++||||||||||||||||+|| ||+||||||
T Consensus 374 k~~~~a~aR~aa~~ar~~~r~~~k~~~~~~~lpgKL~dc~---~~~~~~~eLfivEGDSAggsak~gR---dr~~qailP 447 (637)
T TIGR01058 374 KAIKARDAKEAAKKAREEKKSGKKPKKEKGILSGKLTPAQ---SKNPAKNELFLVEGDSAGGSAKQGR---DRKFQAILP 447 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCccccccc---CCCCCccEEEEEecCcccccccccc---ccceEEEec
Confidence 999999987654332222211 1111 1244 999996 7899999999999999999999999 999999999
Q ss_pred cCccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcc
Q 000459 477 LRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFML 556 (1484)
Q Consensus 477 LrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1484)
||||||||++|+.++|++|+||++|++||||+++.+| |+++|||||||||||
T Consensus 448 LRGKiLNv~ka~~~ki~~N~Ei~~l~~alG~~~g~~~-~~~~LRY~kIiImTD--------------------------- 499 (637)
T TIGR01058 448 LRGKVLNVEKAKLADILKNEEINTIIFCIGTGIGADF-SIKDLKYDKIIIMTD--------------------------- 499 (637)
T ss_pred cCCcccccccCCHHHHhcchHHHHHHHHhCCCcCccC-CccccccceEEEEeC---------------------------
Confidence 9999999999999999999999999999999999886 899999999999999
Q ss_pred cCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEcc--CCeEEEEcChhhHHHHHHHhCCCCCccceEEecC
Q 000459 557 AQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK--NGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKG 634 (1484)
Q Consensus 557 ~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~k--g~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KG 634 (1484)
|||||+|||||||||||||||+||+. ||||+|+||||||+ + |+++.|+||++||++|++.+ ++|+||||||
T Consensus 500 -ADvDGsHIr~LLltff~r~~p~Li~~-G~v~~~~~Pl~kv~-~~~~~~~~y~~~~~e~~~~~~~~----~~~~i~ryKG 572 (637)
T TIGR01058 500 -ADTDGAHIQVLLLTFFYRYMRPLIEL-GHVYIALPPLYKLS-KKDGKKVKYAWSDLELESVKKKL----KNYTLQRYKG 572 (637)
T ss_pred -CCCCcchhHHHHHHHHHHhCHhhccC-CeEEEecCCEEEEE-eCCCceEEEeCCHHHHHHHHHhc----CCCCceEECc
Confidence 99999999999999999999999995 99999999999998 5 45678999999999999875 3699999999
Q ss_pred CCCCChhhHHHHhhccCcc-ccceEEcCchhHHHHHHHhhhhhhHHHHHhhhccC
Q 000459 635 LGTSTSKEGKEYFQNITLH-KKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFE 688 (1484)
Q Consensus 635 LG~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~RK~wi~~~~ 688 (1484)
||||+|+|+|||||||+.+ ...+.+.+..+.+.+..+|-.+++++||+||.+++
T Consensus 573 LGem~~~~l~ettm~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~ 627 (637)
T TIGR01058 573 LGEMNADQLWETTMNPETRTLVRVKIDDLARAERQINTLMGDKVEPRKKWIEANI 627 (637)
T ss_pred hhhhhHHHHHHHhhCcccceeeEEehhhhhhHHHHHHHHcCCCchHHHHHHHHhh
Confidence 9999999999999999654 44454544445556666666678999999999986
No 8
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=100.00 E-value=2.9e-154 Score=1428.43 Aligned_cols=591 Identities=22% Similarity=0.320 Sum_probs=510.4
Q ss_pred chhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEE
Q 000459 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVI 107 (1484)
Q Consensus 28 ~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i 107 (1484)
.+.|++|+||||||||||||||||+ ++|||||||||||||+||+++ |+|+.|+|+|
T Consensus 102 a~~I~vLeGLEaVRkRPGMYIGst~-----------------------~~GLhhLv~EIlDNSVDE~la-G~~~~I~V~i 157 (903)
T PTZ00109 102 ADDIVVLEGLEAVRKRPGMYIGNTD-----------------------EKGLHQLLFEILDNSVDEYLA-GECNKITVVL 157 (903)
T ss_pred hHhCeehhccHHHhcCCCceeCCCC-----------------------CCcceEEEEEEeeccchhhcc-CCCcEEEEEE
Confidence 3689999999999999999999998 379999999999999999997 8999999999
Q ss_pred EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCC-----------------------------------
Q 000459 108 DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDN----------------------------------- 152 (1484)
Q Consensus 108 ~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~----------------------------------- 152 (1484)
|.| |+|+|+||||||||++|+++|+|+||+|||+|||||||+++
T Consensus 158 ~~D-gsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~ 236 (903)
T PTZ00109 158 HKD-GSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKE 236 (903)
T ss_pred cCC-CeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccc
Confidence 986 89999999999999999999999999999999999999884
Q ss_pred -----ccccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecC-ccccc
Q 000459 153 -----VKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPD-LAKFN 226 (1484)
Q Consensus 153 -----~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD-~~iF~ 226 (1484)
.|++||||||||+|||||||+||+|+|+ |+|+.|+|+|++|+++.+..+++ ++..++||+|+|||| ++||+
T Consensus 237 ~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~--RdGK~y~q~F~rG~~v~pLkvig-~~~~~tGT~VtF~PD~~~IF~ 313 (903)
T PTZ00109 237 KESSQMYEYSSGLHGVGLSVVNALSSFLKVDVF--KGGKIYSIELSKGKVTKPLSVFS-CPLKKRGTTIHFLPDYKHIFK 313 (903)
T ss_pred cccCCcceecCcCCCcceeeeeeccCeEEEEEE--ECCEEEEEEeCCCcccCCccccC-CcCCCCceEEEEEeCcchhcC
Confidence 7999999999999999999999999997 99999999999999877655554 332469999999999 99997
Q ss_pred c-Cc-------------cCHHHHHHHHHHHHHhhcccCCceEEEeCCcccC-------------cccHHHHHhhcCCC--
Q 000459 227 M-TH-------------LEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP-------------VKSFAEYVDMYPKS-- 277 (1484)
Q Consensus 227 ~-~~-------------~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~-------------~kgf~dYv~~~~~~-- 277 (1484)
+ .. |++++ |++|++++|| |||||+|+|+|+|.. ..|+.+||......
T Consensus 314 ~~~~~~~~~~~~~~~~~F~~d~---L~~RLrElAf-LNpGL~I~L~DeR~~~~~~~~~~e~f~~egGi~dfv~~ln~~k~ 389 (903)
T PTZ00109 314 THHQHTETEEEEGCKNGFNLDL---IKNRIHELSY-LNPGLTFYLVDERIANENNFYPYETIKHEGGTREFLEELIKDKT 389 (903)
T ss_pred ccccccccccccccccccCHHH---HHHHHHHHhc-cCCCcEEEEEecCccccCCcceEEEEEecCCHHHHHHHhcCCCC
Confidence 6 32 78777 5699999999 889999999999852 24889998765433
Q ss_pred --C----cceeee--ecceEEEEEEecC-Cc-eeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhcc----CCCCCC
Q 000459 278 --V----TRFHER--VNERWEICVTLSE-GQ-FQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKN----KNANVK 343 (1484)
Q Consensus 278 --~----~~i~~~--~~~~~EVAl~~s~-~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk~----K~~~i~ 343 (1484)
. +++++. .+..|||||+|++ +| .+++||||+|+|+ ||||++||+++|+++|++|+++++ ++.+|+
T Consensus 390 ~l~~~~~~I~~~g~~~~i~VEVAlq~s~~~y~e~i~SFVNnI~T~-GGTHv~Gfr~ALTr~In~y~kk~~llK~k~~~i~ 468 (903)
T PTZ00109 390 PLYKDINIISIRGVIKNVNVEVSLSWSLESYTALIKSFANNVSTT-AGTHIDGFKYAITRCVNGNIKKNGYFKGNFVNIP 468 (903)
T ss_pred ccCCCCceEEEEeeecCeEEEEEEEecCCCCceEEEEEECCccCC-CCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCC
Confidence 1 233332 3567999999985 65 5789999999999 999999999999999999998764 246899
Q ss_pred hhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHH----hhHHHHHHHHHHhhhchHHHhhccc
Q 000459 344 AHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVT----AKSGIVETLLSWANFKQSKDLKKND 419 (1484)
Q Consensus 344 ~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~----~~~~Ive~il~~a~~r~~~~~kk~~ 419 (1484)
++||||||++||||+|+||+|+||||++|+|++++..+...+.+.|..++. ....|+++++.++++|++++..+..
T Consensus 469 gedIREGLtavISvki~~PqFeGQTK~KLgn~~vk~~ve~iv~e~L~~~l~~np~~a~~I~~Ka~~a~~AreaAk~arel 548 (903)
T PTZ00109 469 GEFIREGMTAIISVKLNGAEFDGQTKTKLGNHLLKTILESIVFEQLSEILEFEPNLLLAIYNKSLAAKKAFEEAKAAKDL 548 (903)
T ss_pred HHHHhhccEEEEEEeccCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999988777777777666654 4457788888887877754333332
Q ss_pred CCCCCcC---CCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCccchhhhccc-hhhhhh
Q 000459 420 GTKTEDV---RGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREAS-SNQVLN 494 (1484)
Q Consensus 420 ~~kk~~l---~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~-~~~i~~ 494 (1484)
.++|+.. .++| ||+||+ ++++++||||||||||||||||||| ||+||||||||||||||++++ .++|++
T Consensus 549 ~R~K~~~~~~~~lPgKL~DC~---s~d~~~~ELfIVEGDSAgGSAKqgR---dR~~QAILPLRGKILNVeka~~~~kil~ 622 (903)
T PTZ00109 549 IRQKNNQYYSTILPGKLVDCI---SDDIERNELFIVEGESAAGNAKQAR---NREFQAVLPLKGKILNIEKIKNNKKVFE 622 (903)
T ss_pred hhhhhcccccCCCCCcccccc---cCCCcccEEEEEcccCCCccccccc---CccceeecccCCceehhcccccHHHHHh
Confidence 3333221 3466 999999 6899999999999999999999999 999999999999999999995 999999
Q ss_pred cHhHHHHHHHhCCCCCCcc---Ccc----------------------------cccccccEEEeecccccchhhhHHHHH
Q 000459 495 NSEIGNIKKILGLKQGVEY---NNV----------------------------KSLRYGHLMIMTDQVLLAPLSFLLWFI 543 (1484)
Q Consensus 495 N~Ei~~i~~~lG~~~~~~~---~~~----------------------------~~LRYgkiiImtD~~~~~~~~~~~~~~ 543 (1484)
|+||++|++||||+++..| +|+ ++|||||||||||
T Consensus 623 N~EI~~Li~alG~gig~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LRYgKIIIMTD-------------- 688 (903)
T PTZ00109 623 NSEIKLLITSIGLSVNPVTWRQYDLSHGTKASKDESVQNNNSTLTKKKNSLFDTPLRYGKIILLTD-------------- 688 (903)
T ss_pred cHHHHHHHHHhCCCCCcccccccCcccccccccccccccccccccccccccccccCCcCeEEEEeC--------------
Confidence 9999999999999999743 466 8999999999999
Q ss_pred HHHHHhhhhhhcccCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccC------------CeEEEEcChh
Q 000459 544 LIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKN------------GKVLSFYSMP 611 (1484)
Q Consensus 544 ~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg------------~~~~~~ys~~ 611 (1484)
|||||+|||+|||||||||||+||+. ||||+|+||||||+ +| ++.+|+||+.
T Consensus 689 --------------ADVDGsHIrtLLLTff~r~~p~Lie~-G~vyia~pPLyki~-~~~~~~~~~~~~~~k~~~y~~sd~ 752 (903)
T PTZ00109 689 --------------ADVDGEHLRILLLTLLYRFCPSLYEH-GRVYVACPPLYRIT-NNRMKQFNVSTKNSKKYIYTWSDE 752 (903)
T ss_pred --------------CCCChhHHHHHHHHHHHHhCHHhhhC-CEEEEecCCEEEEE-ecCcccccccccccceeEEeCCHH
Confidence 99999999999999999999999995 99999999999999 54 6788999999
Q ss_pred hHHHHHHHhCC---------------------------------------------------------------------
Q 000459 612 DYEAWKESLGG--------------------------------------------------------------------- 622 (1484)
Q Consensus 612 e~e~~~~~~~~--------------------------------------------------------------------- 622 (1484)
|++.+++.++.
T Consensus 753 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (903)
T PTZ00109 753 ELNVLIKLLNKDYSSKETTRSVEEKGNAPDLDNEYEDEKLDNKNMRENNVDEVELKTELGTNVADTEQTDELDINKAFFK 832 (903)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999877621
Q ss_pred CCCccceEEecCCCCCChhhHHHHhhccCccccceEEcCchhHH----HHHHHhhhhhhHHHHHhhhccCCC
Q 000459 623 NASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGE----AIELAFSKKKIEARKKWLLQFEPG 690 (1484)
Q Consensus 623 ~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~~RK~wi~~~~~~ 690 (1484)
..++++||||||||||+|+|||||+|||+.| .++++..+|+. .+++++++ +++.||+||.++.+.
T Consensus 833 ~~~~~~iqRfKGLGEM~~~qLweTTMdP~~R--~L~rv~v~d~~~a~~~~~~LMG~-~~~~Rk~fI~~n~~~ 901 (903)
T PTZ00109 833 FSKHYEIQRFKGLGEMMADQLWETTMDPKKR--ILIRITVSDAMRASELIFLLMGE-DVQSRKQFIFENSPA 901 (903)
T ss_pred cCCcccceeeccHhhhhHHHHHHhhhChhhc--eeeeeeHHHHHHHHHHHHHHhCC-CChhhHHHHHhhccc
Confidence 0136899999999999999999999999887 45555566654 44555554 699999999998653
No 9
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=100.00 E-value=7.2e-151 Score=1406.78 Aligned_cols=590 Identities=26% Similarity=0.394 Sum_probs=523.4
Q ss_pred chhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEE
Q 000459 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVI 107 (1484)
Q Consensus 28 ~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i 107 (1484)
+++||+|++|||||+||||||||++. +||+|+|+|||+||+||+++ |+|+.|+|+|
T Consensus 10 ~~~i~~L~~lE~VrkRP~mYiGs~~~-----------------------~gl~~lv~EivdNaiDe~~a-g~a~~I~V~i 65 (631)
T PRK05559 10 ADSIEVLEGLEPVRKRPGMYIGSTDT-----------------------RGLHHLVQEVIDNSVDEALA-GHGKRIEVTL 65 (631)
T ss_pred HHHCeeccchHHHhcCCCceeCCCCC-----------------------chhhhhhhhhhccccchhhc-CCCCEEEEEE
Confidence 37899999999999999999999984 69999999999999999986 8999999999
Q ss_pred EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCCCeE
Q 000459 108 DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKK 187 (1484)
Q Consensus 108 ~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~ 187 (1484)
+.+ |+|+|+|||||||++.|+.+|+|+||+|||+|||||||++..|++|||+||||+++|||||++|+|+|+ ++|+.
T Consensus 66 ~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~l~V~s~--r~g~~ 142 (631)
T PRK05559 66 HAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSRLEVEVK--RDGKV 142 (631)
T ss_pred eCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheeeEEEEEE--eCCeE
Confidence 987 799999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred EEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcc----cC
Q 000459 188 YKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHR----VP 263 (1484)
Q Consensus 188 y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder----~~ 263 (1484)
|.|+|++|+.+.+.+.++.+....+||+|+|+||+++|++..|+.+. |.+|++++|+ +||||+|+|+|++ +.
T Consensus 143 ~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD~~iF~~~~~~~~~---i~~~l~~~A~-lnpgl~i~l~d~~~~~~f~ 218 (631)
T PRK05559 143 YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPDPKIFDSPKFSPER---LKERLRSKAF-LLPGLTITLNDERERQTFH 218 (631)
T ss_pred EEEEEECCcCccCccccccccCCCCCcEEEEEECHHHcCCcccCHHH---HHHHHHHHHh-hCCCeEEEEEeCCceEEEE
Confidence 99999999877766666655435789999999999999888899887 4599999998 8899999999997 22
Q ss_pred -cccHHHHHhhcCCCC-------cceeee--ecceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHHHHH
Q 000459 264 -VKSFAEYVDMYPKSV-------TRFHER--VNERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHVMAV 332 (1484)
Q Consensus 264 -~kgf~dYv~~~~~~~-------~~i~~~--~~~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~ 332 (1484)
.+||.+|+..+.... +++++. .+.+|||||+|++++ ++++||||+|+|++|||||+||+++|+++|++|
T Consensus 219 ~~~gl~~~v~~~~~~~~~i~~~~~i~~~~~~~~~~veval~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~ 298 (631)
T PRK05559 219 YENGLKDYLAELNEGKETLPEEFVGSFEGEAEGEAVEWALQWTDEGGENIESYVNLIPTPQGGTHENGFREGLLKAVREF 298 (631)
T ss_pred CCccHHHHHHHHhCCCCccCCCCceEEeeeeccceEEEEEEecCCCCeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 368999999886541 334443 378999999999875 689999999999999999999999999999999
Q ss_pred HHhcc---CCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHHh----hHHHHHHHHH
Q 000459 333 VNKKN---KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTA----KSGIVETLLS 405 (1484)
Q Consensus 333 ~~kk~---K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~~----~~~Ive~il~ 405 (1484)
+++++ ++.+++++|||+||++||||+|+||+|+||||++|+|+++...+...+.+.|..++.. ++.|+++++.
T Consensus 299 ~~~~~l~k~~~~l~~~diregl~~vvsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~ii~k~~~ 378 (631)
T PRK05559 299 AEKRNLLPKGKKLEGEDVREGLAAVLSVKIPEPQFEGQTKEKLGSREARRFVSGVVKDAFDLWLNQNPELAEKLAEKAIK 378 (631)
T ss_pred HHHhCccccccCCChhhHhhceEEEEEEEcCCCcccCcccccccCHhHhhhhhhHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 98764 4568999999999999999999999999999999999998766655677777666643 4578888888
Q ss_pred HhhhchHHHhhcccCCCCCcC-CCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCccchh
Q 000459 406 WANFKQSKDLKKNDGTKTEDV-RGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLN 483 (1484)
Q Consensus 406 ~a~~r~~~~~kk~~~~kk~~l-~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLN 483 (1484)
+|++|++++++ ..+|+..+ ..+| ||+||+ ++++++|||||||||||||||+||| ||+|||||||||||||
T Consensus 379 ~a~ar~~~~~~--~~r~k~~~~~~lpgKL~dc~---~~~~~~~eL~lvEGDSAggsak~gr---dr~~qailPLRGKiLN 450 (631)
T PRK05559 379 AAQARLRAAKK--VKRKKKTSGPALPGKLADCT---SQDPERTELFLVEGDSAGGSAKQAR---DREFQAILPLRGKILN 450 (631)
T ss_pred HHHHHHHHHHH--HhhhccccCCCCCCcCcccc---cCCCCCCEEEEEeCCCCcccccccc---CccceeecccCCeecc
Confidence 88888763221 11122211 2355 999999 6789999999999999999999999 9999999999999999
Q ss_pred hhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCC
Q 000459 484 VREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGS 563 (1484)
Q Consensus 484 v~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGs 563 (1484)
|++|+.++|++|+||++|++||||++|.+| |+++||||||||||| |||||+
T Consensus 451 v~~a~~~ki~~N~Ei~~l~~alG~~~~~~~-~~~~LRY~kIiImTD----------------------------aDvDGs 501 (631)
T PRK05559 451 TWEASLDDVLANEEIHDIIVAIGIGPGDSF-DLEDLRYGKIIIMTD----------------------------ADVDGA 501 (631)
T ss_pred cccCCHHHHhcChhHHHHHHHhCCCCCCcc-CccccccCeEEEEeC----------------------------CCCCcc
Confidence 999999999999999999999999999885 899999999999999 999999
Q ss_pred chhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCCChhhH
Q 000459 564 HIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEG 643 (1484)
Q Consensus 564 HI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~ 643 (1484)
||+||||||||||||+||+. ||||+|+||||||+ +|+++.|||++.|+++|+++++...++|+||||||||||+|+|+
T Consensus 502 HI~~Llltff~~~~p~Li~~-G~v~~~~~Pl~kv~-~gk~~~y~~~~~e~~~~~~~~~~~~~~~~i~ryKGLGe~~~~~~ 579 (631)
T PRK05559 502 HIATLLLTFFYRHFPPLVEA-GHVYIALPPLYRVD-KGKKKIYALDEEEKEELLKKLGKKGGKPEIQRFKGLGEMNPDQL 579 (631)
T ss_pred hhHHHHHHHHHHhCHhhccC-CeEEEecCCEEEEE-cCCceEEecCHHHHHHHHHHhcccCCCCCceEeCchhhcCHHHH
Confidence 99999999999999999995 99999999999999 79889999999999999998743225799999999999999999
Q ss_pred HHHhhccCccc-cceEEcC-chhHHHHHHHhhhhhhHHHHHhhhccC
Q 000459 644 KEYFQNITLHK-KDFVWED-DQDGEAIELAFSKKKIEARKKWLLQFE 688 (1484)
Q Consensus 644 ~e~~~~~~~~~-~~~~~~~-~~~~~~~~~~f~~~~~~~RK~wi~~~~ 688 (1484)
|||||||+.|. +.+.+.+ +++.+.++++|++ ++++||+||.++.
T Consensus 580 ~e~~~~p~~r~l~~v~~~d~~~~~~~~~~l~g~-~~~~Rk~~i~~~~ 625 (631)
T PRK05559 580 WETTMDPETRRLVRVTIDDAEETEKLVDMLMGK-KAEPRREWIEENG 625 (631)
T ss_pred HHHhhCccceeEEEEEccchhhHHHHHHHHhCC-CchHHHHHHHHhh
Confidence 99999999764 4444432 3467899999999 8999999999885
No 10
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=100.00 E-value=1.1e-150 Score=1404.81 Aligned_cols=588 Identities=27% Similarity=0.402 Sum_probs=524.1
Q ss_pred chhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEE
Q 000459 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVI 107 (1484)
Q Consensus 28 ~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i 107 (1484)
+++||+|+|+||||+||||||||+++ +||||+|+|||+||+||++ +|+|+.|+|+|
T Consensus 10 ~~~i~~L~~lE~Vr~RPgMYiGs~~~-----------------------~gl~~~v~ElvdNaiDe~~-ag~a~~I~V~i 65 (638)
T PRK05644 10 ASQIQVLEGLEAVRKRPGMYIGSTGE-----------------------RGLHHLVYEIVDNSIDEAL-AGYCDHIEVTI 65 (638)
T ss_pred HHHCeEecchHHHhcCCCceECCCCh-----------------------hhHHhhhHHhhhccccccc-CCCCCEEEEEE
Confidence 36799999999999999999999984 6999999999999999998 58999999999
Q ss_pred EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCCCeE
Q 000459 108 DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKK 187 (1484)
Q Consensus 108 ~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~ 187 (1484)
+.+ |+|+|+|||||||++.|+.+++|++|+|||+||||||||++.|++|||+||+|+++|||||++|+|+|+ ++|+.
T Consensus 66 ~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~~~~v~t~--r~g~~ 142 (638)
T PRK05644 66 NED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTWLEVEVK--RDGKI 142 (638)
T ss_pred eCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheeceEEEEEE--eCCcE
Confidence 986 899999999999999999999999999999999999999999999999999999999999999999997 89999
Q ss_pred EEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccCc---
Q 000459 188 YKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPV--- 264 (1484)
Q Consensus 188 y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~~--- 264 (1484)
|+|+|++|+.+.+.+.++. ...+||+|+|+||+++|++..|+.++ |.+|++++|+ +||||+|+|++++.+.
T Consensus 143 ~~~~~~~G~~~~~~~~~~~--~~~~GT~I~F~Pd~~~F~~~~~e~~~---i~~rl~~~A~-l~pgl~i~l~~er~~~~~~ 216 (638)
T PRK05644 143 YYQEYERGVPVTPLEVIGE--TDETGTTVTFKPDPEIFETTEFDYDT---LATRLRELAF-LNKGLKITLTDEREGEEKE 216 (638)
T ss_pred EEEEEECCeEccCccccCC--cCCCCcEEEEEECHHHcCCcccCHHH---HHHHHHHHHh-hCCCcEEEEEeccCCCcce
Confidence 9999999987755444443 24689999999999999888999887 5699999998 8899999999998432
Q ss_pred ------ccHHHHHhhcCCC------Ccceeeee--cceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHH
Q 000459 265 ------KSFAEYVDMYPKS------VTRFHERV--NERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHV 329 (1484)
Q Consensus 265 ------kgf~dYv~~~~~~------~~~i~~~~--~~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i 329 (1484)
+||.+|++.+... .++++... +.+||||++|++++ .+++||||+|+|++|||||+||+++|+++|
T Consensus 217 ~~f~~~~Gl~dyv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l 296 (638)
T PRK05644 217 ETFHYEGGIKEYVEYLNRNKEPLHEEPIYFEGEKDGIEVEVAMQYNDGYSENILSFANNINTHEGGTHEEGFKTALTRVI 296 (638)
T ss_pred eEEEcCCCHHHHHHHHhcCCCcCCCCCeEEEeeccCeEEEEEEEecCCCceEEEEEECcccCCCCCCHHHHHHHHHHHHH
Confidence 5999999977533 23444432 36799999999876 468999999999999999999999999999
Q ss_pred HHHHHhcc----CCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHH----hhHHHHH
Q 000459 330 MAVVNKKN----KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVT----AKSGIVE 401 (1484)
Q Consensus 330 ~~~~~kk~----K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~----~~~~Ive 401 (1484)
++|+++++ ++.+++++|||+||++||||+|+||+|+||||++|+|++++..+.+.+++.|.+++. .+..|++
T Consensus 297 ~~~~~k~~~~Kk~~~~i~~~dIregl~~vVsv~i~nP~F~gQTKekL~~~~v~~~v~~~v~~~l~~~l~~n~~~~~~I~~ 376 (638)
T PRK05644 297 NDYARKNKLLKEKDDNLTGEDVREGLTAVISVKHPEPQFEGQTKTKLGNSEVRGIVDSVVSEALSEFLEENPNVAKKIVE 376 (638)
T ss_pred HHHHHHhCcccccCCCCChhHHhhceEEEEEEecCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 99997653 236899999999999999999999999999999999998854344567777666664 3458999
Q ss_pred HHHHHhhhchHHHhhcccCCCCCcC--CCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccC
Q 000459 402 TLLSWANFKQSKDLKKNDGTKTEDV--RGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLR 478 (1484)
Q Consensus 402 ~il~~a~~r~~~~~kk~~~~kk~~l--~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLr 478 (1484)
+++.+|++|+++++.+...+|++.+ .++| ||+||+ ++++++|||||||||||||||+||| ||+||||||||
T Consensus 377 ~~~~~a~~r~~a~~~k~~~r~k~~~~~~~lpgKL~dc~---~~~~~~~eLflvEGDSA~gsak~gr---dr~~qailPLr 450 (638)
T PRK05644 377 KAILAARAREAARKARELTRRKSALESSSLPGKLADCS---SKDPEESELYIVEGDSAGGSAKQGR---DRRFQAILPLR 450 (638)
T ss_pred HHHHHHHHHHHHHHhHHHhhcccccccCCCCchhcccc---cCCCCccEEEEEecCCCcccccccc---CccceeecccC
Confidence 9999999998766555444444433 5677 999996 7899999999999999999999999 99999999999
Q ss_pred ccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccC
Q 000459 479 GKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQ 558 (1484)
Q Consensus 479 GKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 558 (1484)
||||||++|+.++|++|+||++|++||||+++.+| ++++||||||||||| |
T Consensus 451 GKiLNv~~a~~~ki~~N~Ei~~l~~alG~~~~~~~-~~~~LRY~kiiImtD----------------------------a 501 (638)
T PRK05644 451 GKILNVEKARLDKILKNEEIRALITALGTGIGDDF-DISKLRYHKIIIMTD----------------------------A 501 (638)
T ss_pred CceeccccCCHHHHHhCHHHHHHHHHhCCCCCCcC-ChhhCccCeEEEEeC----------------------------C
Confidence 99999999999999999999999999999999886 899999999999999 9
Q ss_pred CCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCC-CCccceEEecCCCC
Q 000459 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGN-ASSWSIKYYKGLGT 637 (1484)
Q Consensus 559 D~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~-~~~~~ik~~KGLG~ 637 (1484)
|+||+||++|||||||+|||+||+ +||||+|+||||||+ +|+++ ||||++||++|++.++.. .++|+|||||||||
T Consensus 502 D~DG~HI~~Llltff~~~~p~Li~-~G~l~~~~~Pl~kv~-~gk~~-~~~~~~e~~~~~~~~~~~~~~~~~i~ryKGLGe 578 (638)
T PRK05644 502 DVDGAHIRTLLLTFFYRYMRPLIE-AGYVYIAQPPLYKIK-KGGKE-YAYSDEELDEILAELKLKGNPKYGIQRYKGLGE 578 (638)
T ss_pred CCCchHHHHHHHHHHHHhCHHhcc-CCeEEEecCCEEEEE-eCCeE-eecCHHHHHHHHHHhccccCCCCceeEecCccc
Confidence 999999999999999999999999 599999999999999 88888 999999999999987631 25799999999999
Q ss_pred CChhhHHHHhhccCccccceEEcCchhHHHHHHHhhh---hhhHHHHHhhhccC
Q 000459 638 STSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK---KKIEARKKWLLQFE 688 (1484)
Q Consensus 638 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~~~~RK~wi~~~~ 688 (1484)
|+|+|+|||||||+.| .+.+++.+|.+.++++|+. +++++||+||.++.
T Consensus 579 ~~~~~~~e~~~~~~~r--~~~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~ 630 (638)
T PRK05644 579 MNPEQLWETTMDPETR--TLLQVTIEDAAEADEIFSILMGDDVEPRREFIEENA 630 (638)
T ss_pred cCHHHHHHHhcCccce--eeeeeccccHHHHHHHHHHHhCCCChHHHHHHHHhh
Confidence 9999999999999766 6677778888888999984 78999999999986
No 11
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=100.00 E-value=1e-148 Score=1382.63 Aligned_cols=586 Identities=24% Similarity=0.341 Sum_probs=509.5
Q ss_pred chhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEE
Q 000459 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVI 107 (1484)
Q Consensus 28 ~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i 107 (1484)
.+.|++|+|||||||||||||||+++ +|+|+|||+||+||++ +|+|+.|.|+|
T Consensus 6 ~~~i~~L~gle~VRkRPgMYigs~~~--------------------------~~lv~ElvdNsiDE~~-ag~a~~I~V~i 58 (625)
T TIGR01055 6 AKDIEVLDGLEPVRKRPGMYTDTTRP--------------------------NHLVQEVIDNSVDEAL-AGFASIIMVIL 58 (625)
T ss_pred hhhceeecccHHhhcCCCCeeCCCCc--------------------------ceeehhhhhcccchhh-cCCCCEEEEEE
Confidence 36899999999999999999999974 5899999999999999 48999999999
Q ss_pred EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCCCeE
Q 000459 108 DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKK 187 (1484)
Q Consensus 108 ~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~ 187 (1484)
+.+ |+|+|+|||||||++.||++|+|++|++||+|||||||++..|++|||+||||+++|||||++|+|+++ ++|+.
T Consensus 59 ~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l~v~~~--r~g~~ 135 (625)
T TIGR01055 59 HQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRVKIKVY--RQGKL 135 (625)
T ss_pred eCC-CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeEEEEEE--ECCeE
Confidence 987 899999999999999999999999999999999999999999999999999999999999999999997 89999
Q ss_pred EEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccC----
Q 000459 188 YKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP---- 263 (1484)
Q Consensus 188 y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~---- 263 (1484)
|+|+|++|+.+.+.++++++....+||+|+|+||+++|++..|+++.+ ..|++++|+ +||||+|+|+|+|..
T Consensus 136 ~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD~~~F~~~~~e~~~i---~~~l~~lA~-lnpgi~~~l~der~~~~~~ 211 (625)
T TIGR01055 136 YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPDPEIFDSLHFSVSRL---YHILRAKAV-LCRGVEIEFEDEVNNTKAL 211 (625)
T ss_pred EEEEEECCeEccccccccccCCCCCCeEEEEEECHHHCCCCccCHHHH---HHHHHHHHh-hCCCcEEEEeecCCCceeE
Confidence 999999998877777776653445899999999999999999998774 599999999 889999999999854
Q ss_pred ---cccHHHHHhhcCCC----C-ccee-e--eecceEEEEEEecCC-c-eeEEEEecccccCCCcchhHhHHHHHHHHHH
Q 000459 264 ---VKSFAEYVDMYPKS----V-TRFH-E--RVNERWEICVTLSEG-Q-FQQVSFVNGIATIKGGTHVDYVANQVANHVM 330 (1484)
Q Consensus 264 ---~kgf~dYv~~~~~~----~-~~i~-~--~~~~~~EVAl~~s~~-~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~ 330 (1484)
.+||.+|+..+... . ++++ . ..+..+||||+|+++ + ++++||||+|+|++|||||+||+++|+++|+
T Consensus 212 f~~~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~ve~al~~~~~~~~~~~~SFvN~I~T~~GGTHv~gf~~alt~~in 291 (625)
T TIGR01055 212 WNYPDGLKDYLSEAVNGDNTLPPKPFSGNFEGDDEAVEWALLWLPEGGELFMESYVNLIPTPQGGTHVNGLRQGLLDALR 291 (625)
T ss_pred EecCchHHHHHHHHhcCCCCCCCCceEEEEeeCCceEEEEEEEecCCCCEEEEEeeccccCCCCCCHHHHHHHHHHHHHH
Confidence 26899999876543 1 2221 1 245678999999744 3 5789999999999999999999999999999
Q ss_pred HHHHhcc---CCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHH----hhHHHHHHH
Q 000459 331 AVVNKKN---KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVT----AKSGIVETL 403 (1484)
Q Consensus 331 ~~~~kk~---K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~----~~~~Ive~i 403 (1484)
+|+++++ ++.+++++|||+||++||||+|+||+|+||||++|+|++++..+...+++.|..++. .++.|++++
T Consensus 292 ~~~~~~~~~kk~~~i~~~diregl~~vVsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~i~~k~ 371 (625)
T TIGR01055 292 EFCEMRNNLPRGVKLTAEDIWDRCSYVLSIKMQDPQFAGQTKERLSSRQVAKFVSGVIKDAFDLWLNQNVQLAEHLAEHA 371 (625)
T ss_pred HHHHHhCcccccCCCCHHHHhhccEEEEEEeccCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 9997643 336899999999999999999999999999999999999887777788888777664 566889999
Q ss_pred HHHhhhchHHHhhcccCCCCC--cCCCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCcc
Q 000459 404 LSWANFKQSKDLKKNDGTKTE--DVRGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGK 480 (1484)
Q Consensus 404 l~~a~~r~~~~~kk~~~~kk~--~l~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGK 480 (1484)
+.+|++|+++++.. .|++ ...++| ||+||+ ++++++||||||||||||||||||| ||+||||||||||
T Consensus 372 ~~~a~ar~~~a~~~---~rk~~~~~~~lpgKL~dc~---~~~~~~~eLfivEGDSA~gsak~gr---dr~~qailPLRGK 442 (625)
T TIGR01055 372 ISSAQRRKRAAKKV---VRKKLTSGPALPGKLADCT---RQDLEGTELFLVEGDSAGGSAKQAR---DREYQAILPLWGK 442 (625)
T ss_pred HHHHHHHHHHHHHH---hhcccccCCCCCccccccc---cCCCCceEEEEEecCCCCccccccC---CcceeEEeccCCc
Confidence 98888887433321 2222 224566 999996 7999999999999999999999999 9999999999999
Q ss_pred chhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCC
Q 000459 481 LLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDH 560 (1484)
Q Consensus 481 iLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ 560 (1484)
||||++|+.++|++|+||++|++||||+++.+ ++++||||||||||| ||+
T Consensus 443 iLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~--~~~~LRY~kiiImTD----------------------------ADv 492 (625)
T TIGR01055 443 ILNTWEVSLDKVLNSQEIHDIEVALGIDPDSN--DLSQLRYGKICILAD----------------------------ADS 492 (625)
T ss_pred eeecccCCHHHhhcCHHHHHHHHHhCCCcccc--cccccccceEEEEeC----------------------------CCC
Confidence 99999999999999999999999999999977 499999999999999 999
Q ss_pred CCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCCCh
Q 000459 561 DGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTS 640 (1484)
Q Consensus 561 DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~ 640 (1484)
||+||++|||||||||||+||+ +||||+|+||||||+ +|+++.|+|++.|+++|...++...++|+||||||||||+|
T Consensus 493 DG~HI~~LLltff~r~~p~Li~-~G~vy~~~~Pl~kv~-~gk~~~y~~~e~e~~~~~~~~~~~~~~~~i~ryKGLGe~~~ 570 (625)
T TIGR01055 493 DGLHIATLLCALFFLHFPKLVE-EGHVYVAKPPLYRID-LSKEVYYALDEEEKEKLLYKLKKKKGKPNVQRFKGLGEMNP 570 (625)
T ss_pred CcchhHHHHHHHHHHhCHhhcc-CCeEEEEeCCEEEEe-cCCceEEcCCHHHHHHHHHhhcccCCCcceeEecccchhhH
Confidence 9999999999999999999999 599999999999999 78766444444444444444543224699999999999999
Q ss_pred hhHHHHhhccCcc-ccceEEcCch---hHHHHHHHhhhhhhHHHHHhhhccC
Q 000459 641 KEGKEYFQNITLH-KKDFVWEDDQ---DGEAIELAFSKKKIEARKKWLLQFE 688 (1484)
Q Consensus 641 ~~~~e~~~~~~~~-~~~~~~~~~~---~~~~~~~~f~~~~~~~RK~wi~~~~ 688 (1484)
+|+|||||||..| .+.+.+.+.. +.++++++|+++++++||+||.+++
T Consensus 571 ~~~~e~~~~p~~r~l~~v~~~~~~~~~~~~~~~~lmg~~~~~~Rk~~i~~~~ 622 (625)
T TIGR01055 571 AQLRETTMDPNTRRLVQLTLDDVQDQRVDKIMDMLLAKKRSEDRFNWLQEKG 622 (625)
T ss_pred HHHHHHhhCccceecccccccchhhhhHHHHHHHHhCCCCCchhHHHHHhcc
Confidence 9999999999965 3455553332 4799999999988999999999885
No 12
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=100.00 E-value=3.5e-146 Score=1366.11 Aligned_cols=574 Identities=23% Similarity=0.333 Sum_probs=504.3
Q ss_pred chhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEE
Q 000459 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVI 107 (1484)
Q Consensus 28 ~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i 107 (1484)
++.||+|+||||||||||||||||+.. +||||+|+|||+||+||++ +|+|+.|+|+|
T Consensus 9 a~~i~vL~gle~VRkRPgMYIGst~~~----------------------~GLhhlv~EivdNaiDE~~-AG~a~~I~V~i 65 (756)
T PRK14939 9 ASSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVYEVVDNAIDEAL-AGHCDDITVTI 65 (756)
T ss_pred HHHCeEecccHHHhcCCCCeeCCCCCC----------------------cchhhhhhHhhcccccccc-cCCCCEEEEEE
Confidence 378999999999999999999999852 6999999999999999999 48999999999
Q ss_pred EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCCCeE
Q 000459 108 DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKK 187 (1484)
Q Consensus 108 ~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~ 187 (1484)
+.| |+|+|+|||||||+++|+++|+|+||++||+|||||||+++.|++|||+||||+|||||||+||+|+|+ |+|+.
T Consensus 66 ~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~~l~v~v~--r~gk~ 142 (756)
T PRK14939 66 HAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELTIR--RDGKI 142 (756)
T ss_pred cCC-CeEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCCcccccCCccCccceEeehccCeEEEEEE--eCCeE
Confidence 986 899999999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred EEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccC----
Q 000459 188 YKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP---- 263 (1484)
Q Consensus 188 y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~---- 263 (1484)
|+|+|++|+++.+.+.++.+ ..+||+|+|+||+++|++..|+++++ .+|++++|+ |||||+|+|+|+|.+
T Consensus 143 ~~q~f~~G~~~~~l~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~i---~~rl~elA~-lnpgl~i~l~der~~~~~~ 216 (756)
T PRK14939 143 HEQEFEHGVPVAPLKVVGET--DKTGTEVRFWPSPEIFENTEFDYDIL---AKRLRELAF-LNSGVRIRLKDERDGKEEE 216 (756)
T ss_pred EEEEEecCccccCccccCCc--CCCCcEEEEEECHHHcCCcccCHHHH---HHHHHHHhh-cCCCCEEEEeccCCCceeE
Confidence 99999999887665555543 56899999999999999889999884 599999999 889999999999864
Q ss_pred ---cccHHHHHhhcCCC------Ccceeee--ecceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHHHH
Q 000459 264 ---VKSFAEYVDMYPKS------VTRFHER--VNERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHVMA 331 (1484)
Q Consensus 264 ---~kgf~dYv~~~~~~------~~~i~~~--~~~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~ 331 (1484)
..|+.+|++..... .++++.. .+..||||++|++++ ++++||||+|+|++||||++||+++|+++|++
T Consensus 217 f~~egGi~~fv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~~~SFvN~I~T~~GGTHv~gf~~altr~in~ 296 (756)
T PRK14939 217 FHYEGGIKAFVEYLNRNKTPLHPNIFYFSGEKDGIGVEVALQWNDSYQENVLCFTNNIPQRDGGTHLAGFRAALTRTINN 296 (756)
T ss_pred EEeCChHHHHHHHHhcCCCcCCCCceEEEeeeCCeEEEEEEEEcCCCceeEEEEECcccCCCCCCHHHHHHHHHHHHHHH
Confidence 23677777654322 2333432 345899999999887 57899999999999999999999999999999
Q ss_pred HHHhc----cCCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHH----hhHHHHHHH
Q 000459 332 VVNKK----NKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVT----AKSGIVETL 403 (1484)
Q Consensus 332 ~~~kk----~K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~----~~~~Ive~i 403 (1484)
|+++. +++.+++++||||||++||||+|+||+|+||||++|+|++++..+.+.+++.|..++. .++.|++++
T Consensus 297 y~~~~~l~K~~~~~l~~~diregl~~vvsvki~~P~FegQTK~kL~n~ev~~~v~~~v~e~l~~~l~~np~~a~~ii~k~ 376 (756)
T PRK14939 297 YIEKEGLAKKAKVSLTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVNEKLSEFLEENPNEAKIIVGKI 376 (756)
T ss_pred HHHHhCcccccCCCCCHhHHhhceEEEEEEecCCCcccCchhccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 99752 2346899999999999999999999999999999999999887777777777666653 467899999
Q ss_pred HHHhhhchHHHhhcccCCCCCc--CCCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccCcc
Q 000459 404 LSWANFKQSKDLKKNDGTKTED--VRGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGK 480 (1484)
Q Consensus 404 l~~a~~r~~~~~kk~~~~kk~~--l~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGK 480 (1484)
+.+|++|+++++.+...+||+. ..++| ||+||+ ++++++||||||||||||||||||| ||.||||||||||
T Consensus 377 ~~aa~aR~aa~kar~~~rrK~~~~~~~lpgKL~Dc~---~~d~~~~eLfivEGDSAgGsAk~gR---dr~~qailPLRGK 450 (756)
T PRK14939 377 IDAARAREAARKARELTRRKGALDIAGLPGKLADCQ---EKDPALSELYLVEGDSAGGSAKQGR---DRKFQAILPLKGK 450 (756)
T ss_pred HHHHHHHHHHHHHHHHhccccccccCCCCCCccccc---cCCCCceEEEEEeCCCCcccccccc---CccceeccccCCc
Confidence 9999999876554444444443 34577 999997 7999999999999999999999999 9999999999999
Q ss_pred chhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCC
Q 000459 481 LLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDH 560 (1484)
Q Consensus 481 iLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ 560 (1484)
||||++|+.++|++|+||++|++||||++|.+++|+++||||||||||| |||
T Consensus 451 iLNveka~~~kil~N~Ei~~li~alG~gig~~~fd~~~LRY~kIiIMTD----------------------------ADv 502 (756)
T PRK14939 451 ILNVEKARFDKMLSSQEIGTLITALGCGIGRDEFNPDKLRYHKIIIMTD----------------------------ADV 502 (756)
T ss_pred cchhccCCHHHHhcCHHHHHHHHHhCCCCCcccCChhhCCcCeEEEEcC----------------------------CCC
Confidence 9999999999999999999999999999996556999999999999999 999
Q ss_pred CCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccCCeEEEEcChhhHHHHHHHhCCCC------CccceEEecC
Q 000459 561 DGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNA------SSWSIKYYKG 634 (1484)
Q Consensus 561 DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg~~~~~~ys~~e~e~~~~~~~~~~------~~~~ik~~KG 634 (1484)
||+||++|||||||||||+||+. ||||+|+||||||+ +|+++.|||+++||++|+.+++... .++.|++ ||
T Consensus 503 DGsHIrtLLltff~r~~p~Lie~-G~vyia~pPLykv~-~gk~~~y~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 579 (756)
T PRK14939 503 DGSHIRTLLLTFFYRQMPELIER-GHLYIAQPPLYKVK-KGKQEQYLKDDEALDDYLIELALEGATLHLADGPAISG-EA 579 (756)
T ss_pred CchHHHHHHHHHHHHhChhhccC-CeEEEecCcEEEEe-cCCeeEecCCHHHHHHHHHHhCcCCceeecCCCCcccH-HH
Confidence 99999999999999999999995 99999999999999 8999999999999999999875311 4578999 99
Q ss_pred CCCCChhhHH-HHhhccCccccceEEcCchhHHHHHHHh
Q 000459 635 LGTSTSKEGK-EYFQNITLHKKDFVWEDDQDGEAIELAF 672 (1484)
Q Consensus 635 LG~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~f 672 (1484)
||+|+++++| |++||+..++ +.++..++....+..|
T Consensus 580 l~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~~~~~ 616 (756)
T PRK14939 580 LEKLVKEYRAVRKIIDRLERR--YPRAVLEALIYAPALD 616 (756)
T ss_pred HHHHHHHHHHHHHHHhHHhcc--ccHHHHHHHHhccccc
Confidence 9999999999 9999988764 3333344433333334
No 13
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=100.00 E-value=1.1e-143 Score=1351.37 Aligned_cols=590 Identities=26% Similarity=0.399 Sum_probs=517.1
Q ss_pred chhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEE
Q 000459 28 EEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVI 107 (1484)
Q Consensus 28 ~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i 107 (1484)
++.||+|+++||||+||||||||+++ +||||+|+|||+||+||++ +|+|+.|+|+|
T Consensus 3 ~~~i~~L~~lE~vr~RP~mYiGs~~~-----------------------~gl~~vv~Elv~NaiDe~~-ag~a~~I~V~i 58 (654)
T TIGR01059 3 ASSIKVLEGLEAVRKRPGMYIGSTGE-----------------------TGLHHLVYEVVDNSIDEAM-AGYCDTINVTI 58 (654)
T ss_pred hHHCeEecchHHHhcCCCceeCCCCc-----------------------chHHhhhHHhhhccccccc-cCCCCEEEEEE
Confidence 36899999999999999999999984 7999999999999999998 58999999999
Q ss_pred EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEEEEEEecCCCeE
Q 000459 108 DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKK 187 (1484)
Q Consensus 108 ~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~ 187 (1484)
+.+ |+|+|+|||||||++.|+.++++.+|+||++|||||||+++.|++|||+||+|+++|||||++|+|+++ ++|+.
T Consensus 59 ~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l~v~~~--~~g~~ 135 (654)
T TIGR01059 59 NDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWLEVTVF--RDGKI 135 (654)
T ss_pred eCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcCeEEEEEE--ECCeE
Confidence 975 899999999999999999999999999999999999999999999999999999999999999999997 89999
Q ss_pred EEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccC----
Q 000459 188 YKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP---- 263 (1484)
Q Consensus 188 y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~---- 263 (1484)
|+|+|++|+.+.+..+++ + ...+||+|+|+||+++|.+..|+.+. |.+|++++|+ +||||+|+|++++..
T Consensus 136 ~~~~~~~G~~~~~l~~~~-~-~~~~GT~V~F~pdp~~F~~~~~e~~~---i~~rl~~~A~-l~pgl~i~l~~er~~~~~~ 209 (654)
T TIGR01059 136 YRQEFERGIPLGPLEVVG-E-TKKTGTTVRFWPDPEIFETTEFDFDI---LAKRLRELAF-LNSGVKISLEDERDGKGKS 209 (654)
T ss_pred EEEEEeCCCcccCceecc-C-CCCCCcEEEEEEChHHhCCcccCHHH---HHHHHHHhhc-cCCCeEEEEEeecCCCCce
Confidence 999999998766433333 2 35689999999999999988899887 4699999998 889999999999853
Q ss_pred -----cccHHHHHhhcCCC------Ccceeee--ecceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHH
Q 000459 264 -----VKSFAEYVDMYPKS------VTRFHER--VNERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHV 329 (1484)
Q Consensus 264 -----~kgf~dYv~~~~~~------~~~i~~~--~~~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i 329 (1484)
.+||.+|++++... .+++++. .+.+||||++|++++ .+++||||+|+|++|||||+||+++|+++|
T Consensus 210 ~~f~~~~Gl~~yv~~l~~~~~~l~~~~i~~~~~~~~~~veva~~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i 289 (654)
T TIGR01059 210 VTFHYEGGIKSFVKYLNRNKEPLHEEIIYIKGEKEGIEVEVALQWNDGYSENILSFVNNINTREGGTHLEGFRSALTRVI 289 (654)
T ss_pred eEEEcCCcHHHHHHHHhcCCCcCCCCCeEEEecccCeEEEEEEEecCCCceeEEEEECcccCCCCCcHHHHHHHHHHHHH
Confidence 25899999877532 2344443 356899999999886 467999999999999999999999999999
Q ss_pred HHHHHhcc----CCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhH----HhhHHHHH
Q 000459 330 MAVVNKKN----KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKV----TAKSGIVE 401 (1484)
Q Consensus 330 ~~~~~kk~----K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~----~~~~~Ive 401 (1484)
++|+++++ ++.+++++|||+||++||||+|+||+|+||||++|+|+++...+...+.+.+..++ ..+..|++
T Consensus 290 ~~~~~~~~l~K~~~~~i~~~diregl~~vvsv~i~~P~F~gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n~~~a~~iv~ 369 (654)
T TIGR01059 290 NSYAKNNKLLKESKPNLTGEDIREGLTAVISVKVPDPQFEGQTKTKLGNSEVRSIVESLVYEKLTEFFEENPQEAKAIVE 369 (654)
T ss_pred HHHHHHhCcccccCCCCCHHHHhhccEEEEEEecCCCcccCcccccccChhHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 99997753 24689999999999999999999999999999999999876544334444444444 34579999
Q ss_pred HHHHHhhhchHHHhhcccCCCCCc--CCCCC-ccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceeeecccC
Q 000459 402 TLLSWANFKQSKDLKKNDGTKTED--VRGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLR 478 (1484)
Q Consensus 402 ~il~~a~~r~~~~~kk~~~~kk~~--l~gip-KL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLr 478 (1484)
+++.+|++|+++++.|+..+|++. ..++| ||+||+ ++++++|||||||||||||||++|| ||.||||||||
T Consensus 370 k~~~~a~~r~~a~~~k~~~r~k~~~~~~~lpgKL~dc~---~~~~~~~eL~lvEGDSA~gsak~gR---d~~~qai~PLr 443 (654)
T TIGR01059 370 KAILAAQAREAARKARELTRRKSALDSGGLPGKLADCS---SKDPSKSELYIVEGDSAGGSAKQGR---DRKFQAILPLR 443 (654)
T ss_pred HHHHHHHHHHHHHHhHHHhhcccccccCCCCcCccCcc---cCCCCCCEEEEEecCCCCccccccc---ccccccccccC
Confidence 999999999876665544444433 34566 999996 7899999999999999999999999 99999999999
Q ss_pred ccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccC
Q 000459 479 GKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQ 558 (1484)
Q Consensus 479 GKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 558 (1484)
||||||++|+.++|++|+||++|++||||+++.+| |+++||||||||||| |
T Consensus 444 GKiLNv~~~~~~ki~~n~Ei~~l~~~lG~~~~~~~-~~~~LrY~kiiImtD----------------------------a 494 (654)
T TIGR01059 444 GKILNVEKARLDKILSNQEIGAIITALGCGIGKDF-DLEKLRYHKIIIMTD----------------------------A 494 (654)
T ss_pred CccchhccCCHHHHhhChHHHHHHHHhCCCccccc-cccccccceEEEEeC----------------------------C
Confidence 99999999999999999999999999999999886 899999999999999 9
Q ss_pred CCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccCCeE---------------------EEEcChhhHHHHH
Q 000459 559 DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKV---------------------LSFYSMPDYEAWK 617 (1484)
Q Consensus 559 D~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg~~~---------------------~~~ys~~e~e~~~ 617 (1484)
|+||+||++|||||||+|||+||+. ||||+|+||||||+ +|+++ .|||+++|+++|+
T Consensus 495 D~DG~HI~~Lll~ff~~~~p~Li~~-g~~~~~~~Pl~kv~-~g~~~~~~~~~~~~~~~~~~~~~~~e~Y~~dd~e~e~~l 572 (654)
T TIGR01059 495 DVDGSHIRTLLLTFFYRYMRPLIEN-GYVYIAQPPLYKVK-KGKKERYIKDDKEKELVGEALEDLRALYIYSDKEKEEAK 572 (654)
T ss_pred CCCcchhHHHHHHHHHHhcHhhccC-CeEEEecCCEEEEE-eCCeeeecccchhhhccccccccccceecCCHHHHHHHH
Confidence 9999999999999999999999995 99999999999999 78877 8999999999999
Q ss_pred HHhCC--CCCccceEEecCCCCCChhhHHHHhhccCccccceEEcCchhHHHHHHHhh---hhhhHHHHHhhhccCC
Q 000459 618 ESLGG--NASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFS---KKKIEARKKWLLQFEP 689 (1484)
Q Consensus 618 ~~~~~--~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~---~~~~~~RK~wi~~~~~ 689 (1484)
+.++. ..++|+||||||||||+++|+||||||+..+. +.++..+|...++.+|+ .+++++||+||.++..
T Consensus 573 ~~l~~~~~~~~~~IqryKGLGem~~~~l~ettmdp~~R~--l~~v~l~d~~~~~~~f~~lmg~~~~~Rk~~I~~~~~ 647 (654)
T TIGR01059 573 TQIPVHEGRKGIEIQRYKGLGEMNADQLWETTMDPESRT--LLKVTIEDAVEADRIFSTLMGDEVEPRREFIEANAL 647 (654)
T ss_pred HhccccccCCCcceeeeCchhhcCHHHHHHHhcCcccce--eeeeecchHHHHHHHHHHHhCCCchHHHHHHHHhhh
Confidence 87641 02579999999999999999999999998543 33333456567777777 5679999999999863
No 14
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=100.00 E-value=1.1e-139 Score=1301.85 Aligned_cols=566 Identities=40% Similarity=0.595 Sum_probs=495.7
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTT 157 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~s 157 (1484)
||||+|+|||+||+||+++ |+|+.|+|+|+.+ |+|+|+|||||||++.|+..++|++|+|||+||||||||+..|++|
T Consensus 1 GL~~~v~ElvdNAiD~~~~-g~at~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s 78 (594)
T smart00433 1 GLHHLVDEIVDNAADEALA-GYMDTIKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVS 78 (594)
T ss_pred CceEEEeeehhcccchhcc-CCCCEEEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCcccc
Confidence 8999999999999999996 7899999999987 7999999999999999999999999999999999999999999999
Q ss_pred cCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccC-ccCHHHHH
Q 000459 158 GGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMT-HLEDDVVA 236 (1484)
Q Consensus 158 GGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~-~~~~d~l~ 236 (1484)
||+||||+++|||||++|+|+|+ ++|+.|.|.|++|+.....+.+..+ ...+||+|+|+||+++|... .++.+.
T Consensus 79 ~G~~G~Gls~vnalS~~l~v~~~--~~g~~~~~~~~~~G~~~~~~~~~~~-~~~~GT~V~F~Pd~~~F~~~~~~~~~~-- 153 (594)
T smart00433 79 GGLHGVGASVVNALSTEFEVEVA--RDGKEYKQSFSNNGKPLSEPKIIGD-TKKDGTKVTFKPDLEIFGMTTDDDFEL-- 153 (594)
T ss_pred CCcccchHHHHHHhcCceEEEEE--eCCcEEEEEEeCCCeECccceecCC-CCCCCcEEEEEECHHHhCCcccchHHH--
Confidence 99999999999999999999998 7899999999885433332333333 34689999999999999865 666665
Q ss_pred HHHHHHHHhhcccCCceEEEeCCcc-------cCcccHHHHHhhcCCC------Cccee--eeecceEEEEEEecCCc-e
Q 000459 237 LMKKRVVDLAGCLGKSVKVELNGHR-------VPVKSFAEYVDMYPKS------VTRFH--ERVNERWEICVTLSEGQ-F 300 (1484)
Q Consensus 237 ll~~Rl~dlA~~Ln~glkI~lnder-------~~~kgf~dYv~~~~~~------~~~i~--~~~~~~~EVAl~~s~~~-~ 300 (1484)
|.+|++++|+ +||||+|+|+|++ ...+||.+|++++... .|+.+ +..+.+||||++|++++ +
T Consensus 154 -i~~rl~~~A~-l~pgl~i~l~der~~~~~~f~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~~ 231 (594)
T smart00433 154 -LKRRLRELAF-LNKGVKITLNDERSDEEETFLFEGGIKDYVELLNKNKELLSPEPTYIEGEKDNIRVEVAFQYTDGYSE 231 (594)
T ss_pred -HHHHHHHHHh-cCCCcEEEEeccCCCcceEEECCCCHHHHHHHHhCCCCcccCCCeEEEEEeCCcEEEEEEEccCCCCc
Confidence 5699999998 8899999999998 3467999999988654 12222 23467899999999887 7
Q ss_pred eEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhccCC--CCCChhhHhcceEEEEEEeecCCccCCcccccccccccc
Q 000459 301 QQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKN--ANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSS 378 (1484)
Q Consensus 301 ~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk~K~--~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~ 378 (1484)
+++||||+|+|++|||||+||+++|+++|++|++++++. .+++++|||+||++||||+|+||+|+||||++|+|++++
T Consensus 232 ~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~~~i~~~diregl~~vIsvki~~P~FegQTK~kL~n~~~~ 311 (594)
T smart00433 232 NIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFEGQTKEKLGTSEVR 311 (594)
T ss_pred EEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCCChhhHhhCeEEEEEEEEchheecccccccccChhHH
Confidence 999999999999999999999999999999999876532 589999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHhH----HhhHHHHHHHHHHhhhchHHHhhcccCCCC--CcCCCCCccccccccCCCCCCCcEEEEec
Q 000459 379 FGSKCELSEEFLKKV----TAKSGIVETLLSWANFKQSKDLKKNDGTKT--EDVRGISKLEDANLAGGRNSEQCTLILTE 452 (1484)
Q Consensus 379 ~~~~~~l~~~f~~~~----~~~~~Ive~il~~a~~r~~~~~kk~~~~kk--~~l~gipKL~Dc~~ag~k~~~~~eLflvE 452 (1484)
+++...+++.+..++ ..++.|+++++.+|++|++++..++..+|+ ..+..++||+||+ ++++++|||||||
T Consensus 312 ~~v~~~v~~~l~~~l~~n~~~a~~ii~k~~~~a~ar~~a~~~~~~~r~k~~~~~~l~~KL~dc~---~~~~~~~eL~ivE 388 (594)
T smart00433 312 FGVEKIVSECLLSFLEENPVEASKIVEKVLLAAKARAAAKKARELTRKKKLSKISLPGKLADAS---SAGPKKCELFLVE 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccccccc---cCCCCCcEEEEEe
Confidence 887666666555544 456789999999999988644333222221 2222234999999 5677899999999
Q ss_pred ccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccc
Q 000459 453 GDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVL 532 (1484)
Q Consensus 453 GDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~ 532 (1484)
||||||||+||| ||+||||||||||||||++++.++|++|+||++|++||||+++.+| |+++|||||||||||
T Consensus 389 GDSA~gsak~gr---dr~~qailPLrGKiLNv~~~~~~ki~~N~Ei~~li~alG~~~~~~~-~~~~LRY~kIiImtD--- 461 (594)
T smart00433 389 GDSAGGSAKSGR---DRDFQAILPLRGKLLNVEKASLDKILKNEEIQALITALGLGIGKDF-DIEKLRYGKIIIMTD--- 461 (594)
T ss_pred cCCCcccccccc---CccceeecccCCeecchhhccHHHHhhCHHHHHHHHHhCCCcCccc-CccccccceEEEEeC---
Confidence 999999999999 9999999999999999999999999999999999999999999886 899999999999999
Q ss_pred cchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEccCCe--EEEEcCh
Q 000459 533 LAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGK--VLSFYSM 610 (1484)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~kg~~--~~~~ys~ 610 (1484)
||+||+||+||||||||||||+||+. ||||+|+||||||+ +|++ +.+||++
T Consensus 462 -------------------------aDvDG~HI~~Llltff~r~~p~Li~~-G~vy~~~~Pl~ki~-~g~~~~~~~~~~~ 514 (594)
T smart00433 462 -------------------------ADVDGSHIKGLLLTFFYRYMPPLIEA-GFVYIAIPPLYKVT-KGKKKYVYSFYSL 514 (594)
T ss_pred -------------------------CCCCcchhHHHHHHHHHHhChhhhhC-CeEEEecCCEEEEE-eCCcceEEeehhh
Confidence 99999999999999999999999996 99999999999999 7876 6789999
Q ss_pred hhHHHHHHHhCCCCCccceEEecCCCCCChhhHHHHhhccCccccceEEcCchhHH-HHHHHhhhhhhHHHHHhhhccCC
Q 000459 611 PDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGE-AIELAFSKKKIEARKKWLLQFEP 689 (1484)
Q Consensus 611 ~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~RK~wi~~~~~ 689 (1484)
+||.+|+.....+.++|+||||||||||+|+|+|||||||+.|...++++++.+.+ .+.++|.++++++||+||.++++
T Consensus 515 ~~~~~~~~~~~~~~~~~~i~ryKGLGe~~~~~~~e~~~~p~~r~l~~v~~~d~~~~~~~~~~l~g~~~~~Rk~~i~~~~~ 594 (594)
T smart00433 515 DEYEKWLETKGGNKSKYEIQRYKGLGEMNADQLWETTMDPERRTLLFVTLDDADEADLIFSALMGDKVEPRKEWIEENAP 594 (594)
T ss_pred HHHHHHHHhhhccCCCccceeccccccCCHHHHHHHhcCccceeEEEEEcCchhhHHHHHHHHcCCCchHHHHHHHhhCC
Confidence 99999987543112579999999999999999999999999999999998775543 78888888899999999999863
No 15
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=100.00 E-value=8.8e-121 Score=1082.68 Aligned_cols=433 Identities=31% Similarity=0.506 Sum_probs=410.5
Q ss_pred ccccchHHHHHHHHHHHHHHh-hccccCccccCCCCccceehhhhhcCCC---CCCceeEEeeccccccccCCCCcccHH
Q 000459 697 EKYIKYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAKVAQFSGYVSEHSAYHHGEQSLA 772 (1484)
Q Consensus 697 ~~~~~~~dfi~~eli~ys~~~-~~RaIP~~~DGLKP~QRkIL~~~~~~~l---~~~~Kva~l~G~V~~~~~YHHGe~Sl~ 772 (1484)
.++++|++||+++|+.||||+ +.|||||++||||||||||||+|+++++ ++++|||||+|+|||| +|||||+|||
T Consensus 3 ~~~~~i~~~v~~~~i~ya~~vI~~RAiP~v~DGLKPvQRrILyam~~~~~~~~~~~~KvA~lvG~v~~~-~YHHGd~Sly 81 (439)
T PHA02592 3 LKERSLKSIVNNEALEYAMYTVEERAIPNLIDGLKPVQRFVIHRALEYAKGNKEKFDKVAAIAGGVADL-GYHHGETSAQ 81 (439)
T ss_pred ceeccHHHHHHHHHHHHHHHHhhcccCCccccCCCcchhhhhHhHHhhCCCCCCcchhhHHHHHHHhcc-cCCCchHHHH
Confidence 457999999999999999999 5999999999999999999999996554 5789999999999998 9999999999
Q ss_pred HHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCcccccCCCCCccCccccCCCC
Q 000459 773 STILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPII 852 (1484)
Q Consensus 773 ~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~pii 852 (1484)
+|||+|||+| |||+|||+|+||||||+ |+|||||||||||||++++.||+++| +.|.++||+.+||+||+|+|
T Consensus 82 ~tiV~MAQ~f--snn~pLl~~~GnFGs~~--G~~aAA~RYte~rLs~~a~~l~~d~D---~~~n~dd~~~~eP~~y~P~i 154 (439)
T PHA02592 82 DAGALMANTW--NNNIPLLDGQGNFGSRL--VQKAAAARYIFARVHDNFRKIYKDED---LAPVHEDPEHIPPAFYLPII 154 (439)
T ss_pred HHHHHHhhhh--ccceeeEecCCCCCCCC--CCCccchhhhhcchhHHHHHHhcccC---CCcCCCCCcccCCcccccCC
Confidence 9999999999 89999999999999996 89999999999999999999999998 77778899999999999999
Q ss_pred ceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCCCCCccccCCCcEEEEcccCCCceEEEEEEEEEEEeCceE
Q 000459 853 PTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTL 932 (1484)
Q Consensus 853 P~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~p~~P~~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~~~~i 932 (1484)
||||||||+||||||||+||||||.|||+|++++|+|+++.++.|||+||+|.|.. +|+| +|+++|+++..++++|
T Consensus 155 P~lLvNG~~GIavG~sT~IPphN~~evi~~~~~~l~~~~~~~~~Pdfpg~~G~i~~---tg~g-~~~~rg~~~~~~~~~i 230 (439)
T PHA02592 155 PMVLLNGVSGIATGYATNILPHSPKSVIKAVLAALNGKDITEPKVQFPEFKGEVVE---IEPG-SYEIRGTYELNGKTKL 230 (439)
T ss_pred chhhccCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCCCCCcCCCCCCeEEE---cCCc-eEEEEEEEEEeCCCEE
Confidence 99999999999999999999999999999999999999999999999999999975 4667 9999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHhcCCccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcC
Q 000459 933 RIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDS 1012 (1484)
Q Consensus 933 ~ITELP~~~~t~~y~e~i~~l~~~~~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~ 1012 (1484)
+||||||++|+++|++.|+++++ .+.|++|.| ||+++|+|+|+++++.+++.++++|+++|+|+++|+ .||++||.
T Consensus 231 ~ItElP~~~~~~~~~~~i~~l~~--~~~i~~i~d-s~~~~v~i~I~lk~~~~~~~~~~~L~k~~~L~~~~~-~Nm~~~d~ 306 (439)
T PHA02592 231 HITEIPVKYDRETYVAVLDPLEE--KGKIVSYDD-CTEDGFRFKVTLKREENEEATHEKIMKDFGLIERVS-QNITVINE 306 (439)
T ss_pred EEEeCCCcccHHHHHHHHHHHHh--cCCcCCccc-CCCCceEEEEEECCCCCHHHHHHHHHHhcCchheee-eeEEEEec
Confidence 99999999999999999999998 567889988 999999999999999999999999999999999998 59999999
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCC
Q 000459 1013 KGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092 (1484)
Q Consensus 1013 ~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~ 1092 (1484)
+|+|++|.|+++||++||+||+++|+||++|+|++++.++++|.++++||++||++.+.+.+++++++...|...
T Consensus 307 ~g~~~~~~~~~~Il~~f~~~R~~~~~kR~~~~l~k~~~r~~~l~~~~~fI~~vi~~~~~~~~~~~~~~~~~l~~~----- 381 (439)
T PHA02592 307 NGKLKVYENAEDLIRDFVEIRKTYVQKRIQYEIKETEEAFDLALAKAEFIKRVIAGEIVLQGKTRSELTEELSDN----- 381 (439)
T ss_pred CCeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHc-----
Confidence 999999999999999999999999999999999999999999999999999999999999888888887777542
Q ss_pred CCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHHH
Q 000459 1093 PKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVK 1172 (1484)
Q Consensus 1093 ~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~~ 1172 (1484)
++++.||+|||+||||+||++++++|++|+++++++++.|+.+++.+||++
T Consensus 382 -----------------------------~~~~~q~~~lL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~t~~~~w~~ 432 (439)
T PHA02592 382 -----------------------------KDFGEYADKLVAMNIYSMTSDEREKLQKEAEELEKEHEYWKKTTAKKEYIK 432 (439)
T ss_pred -----------------------------CCCHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000459 1173 DLDALDM 1179 (1484)
Q Consensus 1173 DLd~f~~ 1179 (1484)
||++|++
T Consensus 433 DL~~~~~ 439 (439)
T PHA02592 433 DLEELKK 439 (439)
T ss_pred HHHHHhC
Confidence 9999963
No 16
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=100.00 E-value=1.2e-114 Score=1041.35 Aligned_cols=431 Identities=39% Similarity=0.557 Sum_probs=401.2
Q ss_pred cchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCCC---CceeEEeeccccccccCC-CCcccHHHH
Q 000459 700 IKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIK---EAKVAQFSGYVSEHSAYH-HGEQSLAST 774 (1484)
Q Consensus 700 ~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~~---~~Kva~l~G~V~~~~~YH-HGe~Sl~~t 774 (1484)
++|+|||+++|+.||||++ .|||||++||||||||||||+|+++++++ ++|||+++|.|++ +|| |||+|||+|
T Consensus 1 ~~~~~~~~~~~i~ya~~vi~~RaiP~v~DGLKPvqRrILyam~~~~~~~~~~~~k~a~~~g~~~~--~YHpHGd~Siy~a 78 (445)
T smart00434 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMG--KYHPHGDSSLYDA 78 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCccccCCCchhhHHHHHHHHcCCCCCCceeEEEEEEEeecc--CCCCCchHHHHHH
Confidence 5799999999999999765 99999999999999999999999999987 4566666666654 999 999999999
Q ss_pred HHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCCCc
Q 000459 775 ILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIP 853 (1484)
Q Consensus 775 iv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP 853 (1484)
||+|||+|+ ||+|||+|+||||||+ ||+|||||||||||||++++.||+++|+++|+|+ ||||+.+||+||||+||
T Consensus 79 iV~mAQ~f~--~n~pLl~~~GnFGs~~-~g~~aAA~RYte~rLs~~a~~l~~~~d~~~v~~~~n~Dg~~~EP~~lp~~iP 155 (445)
T smart00434 79 IVRMAQDFS--NNYPLLDGQGNFGSRL-DGDDAAAMRYTETRLSPLARELLPDIDKDTVDFVPNYDGQEIEPTVLPPIIP 155 (445)
T ss_pred HHHHhcccc--cccceEeCCCCCCCCC-CCCcccchHHHHHhHHHHHHHHHhhcCcccccCCcCCCccccCCccccccCC
Confidence 999999997 9999999999999999 8999999999999999999999999999999999 89999999999999999
Q ss_pred eeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCCC----CCccccCCCcEEEEcccCCCceEEEEEEEEEEEeC
Q 000459 854 TVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEP----MHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNE 929 (1484)
Q Consensus 854 ~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~p----~~P~~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~~ 929 (1484)
|||||||+||||||||+||||||.|||+|++++|+|+++.+ +.|||+||.|.+..... + +|++||+|+++++
T Consensus 156 ~lLvNGs~GIavG~aT~IpphN~~evi~~~~~~l~~~~~~~~~l~~~~~~pdF~~g~~~~~~---~-~~~~rg~~~~~~~ 231 (445)
T smart00434 156 NLLVNGSSGIAVGMATNIPPHNLREVIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEIIGP---G-SYVVRGKIEIEDG 231 (445)
T ss_pred eeeeecCcceeeeeecCCCCCCHHHHHHHHHHHhCCCCCCHHHHhcCCcCCCCCCeeEEecC---C-eEEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999998 99999999988877543 3 8999999999765
Q ss_pred -ceEEEEecCCCCCHHHHHHHHHHHHhcC-Ccccccccccc-CCCceEEEEEeCchhhHHHHHHHHHhHccceeecccce
Q 000459 930 -TTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYS-DDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSN 1006 (1484)
Q Consensus 930 -~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s-~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~N 1006 (1484)
++|+||||||++||++|+++|+++++.+ +.+|.+.+|+| ++++|+|+|+++++.+++.++++|||+|+||++|++||
T Consensus 232 ~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~~~L~k~t~Lq~s~~~n~ 311 (445)
T smart00434 232 RNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVLNGLYKLTKLQSTFSINM 311 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCCCceEEEEEECCCcCHHHHHHHHHHhcCCeeeeceeE
Confidence 8999999999999999999999999865 67788888887 88999999999999999999999999999999999999
Q ss_pred EEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHH
Q 000459 1007 MHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQ 1086 (1484)
Q Consensus 1007 mvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~ 1086 (1484)
|++++ +|++++| ++.+||++|++||+++|+||++|+|++++ +.+++.++.+||..++.++|+...++++++++++++
T Consensus 312 ~~l~~-~g~p~~~-~l~~iL~~f~~~R~~~~~rR~~~~l~k~~-~~r~~~~~~~fi~~~~~d~ii~~ir~~~~~~~~~~~ 388 (445)
T smart00434 312 LALFD-NGKPKKY-NLKEILKEFLDHRLEVYTRRKEYLLGKLE-AERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKE 388 (445)
T ss_pred EEEec-CCeeEEe-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchHHHHhhccchhHHHHHH
Confidence 99997 8998888 56799999999999999999999999999 556668888999999999999999999998889988
Q ss_pred cCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCc
Q 000459 1087 KGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATP 1166 (1484)
Q Consensus 1087 ~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~ 1166 (1484)
.+|.+| ++++.||+|||+|+||+||++++++|++|++++++++++|+++++
T Consensus 389 ~l~~~f-----------------------------~~~~~q~~~IL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~l~ 439 (445)
T smart00434 389 LLMERF-----------------------------ELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILA 439 (445)
T ss_pred hCCccC-----------------------------CCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 887765 256689999999999999999999999999999999999999999
Q ss_pred hhHHH
Q 000459 1167 ESLWV 1171 (1484)
Q Consensus 1167 ~dLW~ 1171 (1484)
.++|+
T Consensus 440 ~~~~~ 444 (445)
T smart00434 440 SELWL 444 (445)
T ss_pred chhhc
Confidence 99996
No 17
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=100.00 E-value=9.5e-114 Score=1028.39 Aligned_cols=419 Identities=38% Similarity=0.581 Sum_probs=384.1
Q ss_pred hccccCccccCCCCccceehhhhhcCCCC---CCceeEEeeccccccccCCCCcccHHHHHHHhhcccccCCcccccccC
Q 000459 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPN 794 (1484)
Q Consensus 718 ~~RaIP~~~DGLKP~QRkIL~~~~~~~l~---~~~Kva~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~ 794 (1484)
+.|||||++||||||||||||+|++++++ +++|||||||+|||+. |||||+|||+|||+|||+| |||+|||+||
T Consensus 1 ~~RAiPdv~DGLKPvqRrILyam~~~~~~~~~~~~K~A~lvG~v~g~~-hpHGd~Siy~aiV~MAQ~f--s~n~pLldg~ 77 (445)
T cd00187 1 NGRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKY-HPHGDSSLYDTIVRMAQDF--SNNIPLLDPQ 77 (445)
T ss_pred CCCCCCchhcCCCchHHHHHHHHHHhCCCCCCCceeehhhhhhHhhcc-CCCchHHHHHHHHHHhhhc--cccceeEeCC
Confidence 47999999999999999999999999998 8999999999999975 6699999999999999999 8999999999
Q ss_pred CCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCCCceeeecCCcceeeeeecCCCC
Q 000459 795 GQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPN 873 (1484)
Q Consensus 795 GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP~ 873 (1484)
|||||| ||++||||||||||||++++.||+++|+++|+|+ ||||+.+||+||||+|||||||||+||||||||+|||
T Consensus 78 GnFGS~--~Gd~aAA~RYte~rLs~~a~~l~~d~d~~~v~~~~n~Dg~~~EP~~lp~~iP~lLvNGs~GIavG~aT~IPp 155 (445)
T cd00187 78 GNFGSR--DGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPP 155 (445)
T ss_pred CCCCCC--CCCcccchHHHhhhhhHHHHHHHhhcCccccccccCCCCCccCCccccccCCeeeeecCcceeeeeccCCCC
Confidence 999999 8999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCC-------CCCCccccCCCcEEEEc------ccCCCceEEEEEEEEEEEeC---ceEEEEec
Q 000459 874 YNPRDIVANVRRLLNGEMM-------EPMHPWYRGFGGTIEKT------ASKEAGVTYTVTGIIEEVNE---TTLRIKEL 937 (1484)
Q Consensus 874 hNp~eVi~~i~~~L~~~~~-------~p~~P~~~Gf~G~I~~~------~~~g~G~~~~~~G~~e~~~~---~~i~ITEL 937 (1484)
|||.|||+|++++|+|+++ .++.|||+||+ .|... |.||+| +|++||+|++++. ++|+||||
T Consensus 156 hN~~evi~a~~~~l~~~~~~~~~l~~~~~~Pdfptgg-~I~~~~~~~~~y~tG~g-~~~~rg~~~~~~~~~~~~i~ItEl 233 (445)
T cd00187 156 HNLREVIDALRALIDNPEASIDELMEIIKGPDFPTGG-IIEGRAGIREAYETGRG-RYIIRGKYEIEDDEGRNTIEITEL 233 (445)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHhcCCCCCCCCCCC-EEecChhHHHHhhcCCc-eEEEEEEEEEEccCCCceEEEEeC
Confidence 9999999999999999999 47899999986 77543 567888 9999999999875 89999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCcc
Q 000459 938 PIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVI 1016 (1484)
Q Consensus 938 P~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki 1016 (1484)
||++|+++|+++|+++++.+ .++|++|+|+|++++|+|+|+++++.+++.++++|||+|+|+++|++ ||++|+++|++
T Consensus 234 P~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~-Nm~~~~~~g~p 312 (445)
T cd00187 234 PYQVNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI-NMVAFDPNGRP 312 (445)
T ss_pred CCcccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee-eEEEEecCCee
Confidence 99999999999999999865 77999999999999999999999999999999999999999999997 99999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCC
Q 000459 1017 KKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNS 1096 (1484)
Q Consensus 1017 ~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~s 1096 (1484)
++| ++.+||++|++||+++|+||++|+|+++++++|+|+++++||++|+ + |..+ ++.+
T Consensus 313 ~~~-~l~~iL~~f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~id------------~-vi~~--------ir~s 370 (445)
T cd00187 313 KKL-NLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNID------------E-VINL--------IRSS 370 (445)
T ss_pred EEe-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------H-HHHH--------Hhcc
Confidence 888 9999999999999999999999999999999999999999999874 1 2223 2222
Q ss_pred ccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccC-----chhHHH
Q 000459 1097 KSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKAT-----PESLWV 1171 (1484)
Q Consensus 1097 k~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts-----~~dLW~ 1171 (1484)
.++.+.+++... ..++++.||+|||+|+||+||.+++++|++|++++++++++|++++ +.++|.
T Consensus 371 ---~~ak~~L~~~l~--------~~~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~ 439 (445)
T cd00187 371 ---DEAKKALIEELE--------KLGFSEIQADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWK 439 (445)
T ss_pred ---HHHHHHHHHHHH--------hcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 222332322100 0257788999999999999999999999999999999999999999 999999
Q ss_pred HHHHHH
Q 000459 1172 KDLDAL 1177 (1484)
Q Consensus 1172 ~DLd~f 1177 (1484)
+||++|
T Consensus 440 ~eL~~~ 445 (445)
T cd00187 440 EELDEF 445 (445)
T ss_pred HHHHhC
Confidence 999975
No 18
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=100.00 E-value=4.1e-112 Score=1022.12 Aligned_cols=404 Identities=49% Similarity=0.770 Sum_probs=359.0
Q ss_pred cccCccccCCCCccceehhhhhc-CCC-CCCceeEEeeccccccccCC-CCcccHHHHHHHhhcccccCCcccccccCCC
Q 000459 720 RSIPSMVDGLKPGQRKILFCSFK-RNF-IKEAKVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQ 796 (1484)
Q Consensus 720 RaIP~~~DGLKP~QRkIL~~~~~-~~l-~~~~Kva~l~G~V~~~~~YH-HGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~Gn 796 (1484)
|||||++||||||||||||+|++ ++. ++++|||||+|+| +++|| |||+|||+|||+|||+|+| |+|||+|+||
T Consensus 1 RaiP~~~DGLKP~qRkil~~~~~~~~~~~~~~Kva~l~G~v--~~~YHpHGe~sl~~tiv~mAq~f~~--n~pll~~~Gn 76 (426)
T PF00521_consen 1 RAIPSVRDGLKPVQRKILYAMFKLRNPDKKEIKVAQLVGYV--MGKYHPHGESSLYDTIVRMAQDFVG--NYPLLDGQGN 76 (426)
T ss_dssp HHS-BTTTS--HHHHHHHHHHHHCCCTTSS-EEHHHHHHHH--HHHTSTSSHHHHHHHHHHCTSTTTT--SS-SEEEES-
T ss_pred CCCCccccCCChHHHHHHHHHHHHhhcccccceeeeehhhh--HhhhCCCcchhhhhhhhhhhhcccc--ccceeeCCCC
Confidence 89999999999999999999999 676 7899999999999 45999 9999999999999999986 9999999999
Q ss_pred CcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCCCceeeecCCcceeeeeecCCCCCC
Q 000459 797 FGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYN 875 (1484)
Q Consensus 797 FGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP~hN 875 (1484)
||||++||+| |||||||||||++++.||+++|+++|+|+ ||||+++||+||||+|||||||||+||||||||+|||||
T Consensus 77 FGs~~~g~~~-Aa~RYi~~rls~~~~~l~~~~d~~~l~~~~~~Dg~~~EP~~~~p~iP~vLvNG~~GIa~G~sT~Ip~hN 155 (426)
T PF00521_consen 77 FGSRLDGDKD-AAMRYIETRLSKIARDLFPDIDDDTLDYVPNYDGSEIEPEVYPPIIPMVLVNGASGIAVGMSTNIPPHN 155 (426)
T ss_dssp BSCTTTSCTB-TTTTTCEEEE-HHHHHHCTTTTTTCS-EEEETTSSSEEESS---SS-HHHHHTEEEESSSEEEEE--B-
T ss_pred cccccCCCCC-CccceEEEechHhHHHHHhhhcccccccCcCccccccchHHhhhcCcHHhccCCcchhhhhccCCCCCC
Confidence 9999888887 99999999999999999999999999999 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC---C-CCCccccCCCcEEEEc-----ccCCCceEEEEEEEEEEEeCceEEEEecCCCCCHHHH
Q 000459 876 PRDIVANVRRLLNGEMM---E-PMHPWYRGFGGTIEKT-----ASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDY 946 (1484)
Q Consensus 876 p~eVi~~i~~~L~~~~~---~-p~~P~~~Gf~G~I~~~-----~~~g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y 946 (1484)
|.|||+||+++|+|+++ . ++.|||+||+|+|... |.+|+| +|+++|++++.+ ++|+||||||++||++|
T Consensus 156 ~~evi~~~~~~l~~~~~~l~~~~~~P~f~~~~g~i~~~~~~~~y~tg~G-~~~~~~~~~~~~-~~i~ITELP~~~~t~~~ 233 (426)
T PF00521_consen 156 PREVIDAIIRLLDGEEIELMKYIMGPDFPTFGGIIEKNGIKNIYETGRG-SIEVRGKYEIEG-NTIVITELPYGVWTEKY 233 (426)
T ss_dssp HHHHHHHHHHHHHTTT-HHCTTSSSB--TTSCEEEECHHHHHHHHHSEE-EEEEEEEEEEET-EEEEEEE--TT--HHHH
T ss_pred HHHHHHHHHHHhCCCcccccccCCCCCCCCCCceeeccchhhhhccCcc-eEEEeeEEEEec-cEEEEEeCCccccHHHH
Confidence 99999999999999998 4 8999999999999543 346777 999999999887 99999999999999999
Q ss_pred HHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCccccccCHHHH
Q 000459 947 REFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQI 1025 (1484)
Q Consensus 947 ~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eI 1025 (1484)
+++|+++++.+ ++ |+||+|+|++ +|+|+|+|+++.+++..+++|+|+|+|+++|++|||+++|+ | |+|.|+++|
T Consensus 234 ~e~i~~l~~~~~i~-I~d~~D~Sd~-~v~ivI~lk~~~~~~~~~~~L~k~t~Lq~s~~~n~~~l~~~-~--p~~~~~~eI 308 (426)
T PF00521_consen 234 KEKIEELVEDKKIK-ISDYRDESDR-GVRIVIELKRGADPEKILEGLYKKTKLQSSISTNNMVLFDN-G--PKYDSLKEI 308 (426)
T ss_dssp HHHHHHHHHTTSST-EEEEEE-BBT-BS-EEEEESTTSHHHHHHHHHHHHSTTEEEEEEETEEEETT-E--EEESSHHHH
T ss_pred HHHHHHHhccCcch-hhHHHhcCCC-ceeEEEEecCCccHHHHHHHHHHHhhhhccccchheEEecC-c--ceeCCHHHH
Confidence 99999999855 56 8899999766 99999999999999999999999999999999999999998 4 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccH
Q 000459 1026 LEEFFHIRLEFYEKRKKVQLENLELELLKLE------NKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSI 1099 (1484)
Q Consensus 1026 L~eF~~~Rle~y~kRk~~lL~kl~~~l~~Le------nkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~ 1099 (1484)
|++|+++|+++|++|++|++++++.++++|+ ++++||..||++++. .++.|.+|+++|
T Consensus 309 L~~f~~~R~~~~~kR~~~~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s~~-~~~~k~~L~~~L--------------- 372 (426)
T PF00521_consen 309 LKEFYEFRLEYYQKRKQYLLEKLEERLHILEGLIKALNKIDFIIEVIRGSID-KNKAKKDLIEEL--------------- 372 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSS-HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-chHHHHHHHhhc---------------
Confidence 9999999999999999999999999999999 999999999999988 777778877776
Q ss_pred HHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCch--hHHHHHHH
Q 000459 1100 EAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPE--SLWVKDLD 1175 (1484)
Q Consensus 1100 ~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~--dLW~~DLd 1175 (1484)
++.||+|||+||||+||++++++|++|+++++++++.|+++++. ++|++|||
T Consensus 373 ------------------------~~~q~~yLL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~~~~l~~~dLd 426 (426)
T PF00521_consen 373 ------------------------SEEQADYLLSMPLRRLTKEEIEKLQKEIKELEKEIEELEKILPKIKDLWKKDLD 426 (426)
T ss_dssp ------------------------CHHHHHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHhchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23689999999999999999999999999999999999999999 99999997
No 19
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=100.00 E-value=3.8e-108 Score=1034.40 Aligned_cols=443 Identities=26% Similarity=0.382 Sum_probs=405.1
Q ss_pred cccccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCC---CCCceeEEeeccccccccCC-CCccc
Q 000459 696 KEKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAKVAQFSGYVSEHSAYH-HGEQS 770 (1484)
Q Consensus 696 ~~~~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l---~~~~Kva~l~G~V~~~~~YH-HGe~S 770 (1484)
.+..++|++||+++|+.||||+| .|||||++||||||||||||+|+++++ ++++||||+||+||+ +|| |||+|
T Consensus 9 ~i~~~~~~~~~~~~~l~ya~~vi~~RalP~~~DGlKPvqRrily~m~~~~~~~~~~~~K~A~~vG~v~g--~YHPHGd~s 86 (742)
T PRK05561 9 GIEDLPLEEFLEERYLRYAMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARVVGDVLG--KYHPHGDSS 86 (742)
T ss_pred cceEeeHHHHHHHHHHHHHHHHhhcccCCchhcCCCCchhhhhHhHHhcCCCcCCCceeehhhhhhHhh--ccCCCcHHH
Confidence 57889999999999999999996 999999999999999999999999995 578999999999997 999 99999
Q ss_pred HHHHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccC
Q 000459 771 LASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYM 849 (1484)
Q Consensus 771 l~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~ 849 (1484)
+|+|||+|||+| |||+|||+|||||||| +|++||||||||||||++++.||+++|+++|+|+ ||||+++||+|||
T Consensus 87 iy~a~v~maQ~f--~~~~pli~~~GnFGs~--~g~~~Aa~RYte~rl~~~~~~l~~~~d~~~v~~~~n~d~~~~EP~~lp 162 (742)
T PRK05561 87 IYDAMVRMAQDF--SYRYPLVDGQGNFGSI--DGDPAAAMRYTEARLSPIAELLLEEIDEGTVDFVPNFDGTLKEPTVLP 162 (742)
T ss_pred HHHHHHHHhhhc--cccccccccCCCCCCC--CCCcHHHHHHHHHhhhHHHHHHhhhcCccccccccCCCCcccCccccc
Confidence 999999999999 7999999999999999 5899999999999999999999999999999999 9999999999999
Q ss_pred CCCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCC--CCCccccC--C-C-cEEE-------EcccCCCce
Q 000459 850 PIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME--PMHPWYRG--F-G-GTIE-------KTASKEAGV 916 (1484)
Q Consensus 850 piiP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~--p~~P~~~G--f-~-G~I~-------~~~~~g~G~ 916 (1484)
|+|||||||||+|||||||||||||||.|||+|++++|+|+++. ++.||++| | + |.|. ..|.||+|
T Consensus 163 ~~~P~lLvNG~~GIavG~aT~ipphn~~evi~~~~~~i~~~~~~~~~l~~~~~gpdFptGg~ii~~~~~i~~~y~tg~G- 241 (742)
T PRK05561 163 ARFPNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGGEIITGRDGIRKAYETGRG- 241 (742)
T ss_pred cccchhhccCCcchhhhhhcCCCCCCHHHHHHHHHHHHhCCCCChHHHhhcccCCCCCCCcEEEeCchhHHHHhhcCCc-
Confidence 99999999999999999999999999999999999999999874 67899888 6 4 4454 34678988
Q ss_pred EEEEEEEEEEEe----CceEEEEecCCCCCHHHHHHHHHHHHhcC-CccccccccccCCCc-eEEEEEeCch-hhHHHHH
Q 000459 917 TYTVTGIIEEVN----ETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTT-VDFEVFLSEE-SMMRTKQ 989 (1484)
Q Consensus 917 ~~~~~G~~e~~~----~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~-v~f~I~lk~~-~~~~~~~ 989 (1484)
+|++||+|++.+ +++|+||||||++|+++|+++|+++++.+ .++|+|++|+|++++ |||+|+++++ ..++.++
T Consensus 242 ~~~~r~~~~~~~~~~~~~~i~itEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~d~s~~~~~~r~~i~~k~~~~~~~~~~ 321 (742)
T PRK05561 242 SIRVRARWEIEDLAGGRWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDESDRENPVRIVIEPKSNRVDPEALM 321 (742)
T ss_pred eEEEEEEEEEEecCCCCceEEEEeCCCcccHHHHHHHHHHHHhcCCccccccceeccCCCCCEEEEEEECCCcCCHHHHH
Confidence 999999999875 67899999999999999999999999866 789999999999998 9999999999 7788999
Q ss_pred HHHHhHccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecce
Q 000459 990 EGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGE 1069 (1484)
Q Consensus 990 e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~ge 1069 (1484)
++||++|+||++|++ ||++||.+|++ +++++++||++|++||+++|+||++|+|+++++++|+|++.+.++..+
T Consensus 322 ~~l~k~t~l~~~~~~-n~~~~d~~~~p-~~~~l~~il~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~i---- 395 (742)
T PRK05561 322 NHLFATTDLESSYRV-NMNAIGLDGRP-RVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNI---- 395 (742)
T ss_pred HHHHHhcCcceeeee-eEEEEccCCEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----
Confidence 999999999999996 99999999984 889999999999999999999999999999999999999977777653
Q ss_pred eEecccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHH
Q 000459 1070 IVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLA 1149 (1484)
Q Consensus 1070 I~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~ 1149 (1484)
+.|.++ ++.++++ .+.+++ .+++++.||+|||+|+|++||++++++|++
T Consensus 396 ---------d~vI~i--------ir~s~~a---k~~l~~-----------~f~~~~~qa~~Il~m~L~~Lt~le~~kl~~ 444 (742)
T PRK05561 396 ---------DEVIRI--------IRESDEP---KANLMA-----------RFDLSEIQAEAILELRLRRLAKLEEIEIRK 444 (742)
T ss_pred ---------HHHHHH--------HhcCccH---HHHHHH-----------HhCCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444 2334432 222322 367899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc--CchhHH---HHHHHHHHHHHH
Q 000459 1150 DRDKLNEEVDDLRKA--TPESLW---VKDLDALDMQLD 1182 (1484)
Q Consensus 1150 E~~el~~ei~~L~~t--s~~dLW---~~DLd~f~~~l~ 1182 (1484)
|+++|+++|++|+.+ ++..+| .+||+++.+++.
T Consensus 445 E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg 482 (742)
T PRK05561 445 EQDELRKEIAELEAILASERKLRKLIKKELKADAKKFG 482 (742)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999 999999 888888887763
No 20
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=6.3e-107 Score=1022.84 Aligned_cols=442 Identities=23% Similarity=0.303 Sum_probs=399.4
Q ss_pred cccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCC---CCCceeEEeeccccccccCC-CCcccHH
Q 000459 698 KYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAKVAQFSGYVSEHSAYH-HGEQSLA 772 (1484)
Q Consensus 698 ~~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l---~~~~Kva~l~G~V~~~~~YH-HGe~Sl~ 772 (1484)
..++|+++++++|+.||||+| +|||||++||||||||||||+|+++++ ++++||||+||+|++ +|| |||+|+|
T Consensus 2 ~~~~~~~~~~~~~l~ya~~vi~~RalP~~~DGlKPvqRril~~m~~~~~~~~~~~~K~A~~vG~v~g--~YHpHGd~siy 79 (738)
T TIGR01061 2 FNKPLEEVFGESFGKYAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMG--KYHPHGDSSIY 79 (738)
T ss_pred cccCHHHHHHHHHHHhHHHHHhhccCCccccCCCchhhhhhHhHHhcCCCCCCCceeeeeehhhhhh--ccCCCchHHHH
Confidence 468999999999999999999 999999999999999999999999996 679999999999986 999 9999999
Q ss_pred HHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCC
Q 000459 773 STILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPI 851 (1484)
Q Consensus 773 ~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~pi 851 (1484)
+|||+|||+| |||+|||+|||||||+ ||++||||||||||||++++.||+++|+++|+|+ ||||+.+||+||||+
T Consensus 80 ~a~v~maq~f--~~~~pli~~~GnFGs~--~gd~~Aa~RYte~rl~~~a~~~~~~~d~~~v~~~~n~d~~~~EP~~lp~~ 155 (738)
T TIGR01061 80 DAMVRMSQDW--KNNWTLVEMHGNNGSI--DGDNAAAMRYTEARLSLIASELLKDIDKKTVSFIPNFDDSEKEPTVLPAL 155 (738)
T ss_pred HHHHHHhhhc--cccceeEeCCCCCCCC--CCCcchhhHHHhhhhhHHHHHHhhccCccccccccCCCCCcccccccccc
Confidence 9999999999 6999999999999998 7899999999999999999999999999999999 999999999999999
Q ss_pred CceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCC-----CCCccccCCCcEEE-------EcccCCCceEEE
Q 000459 852 IPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME-----PMHPWYRGFGGTIE-------KTASKEAGVTYT 919 (1484)
Q Consensus 852 iP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~-----p~~P~~~Gf~G~I~-------~~~~~g~G~~~~ 919 (1484)
|||||||||+|||||||||||||||.|||+||+++|++++++ ++.||+.+|+|-|. ..|.||+| +|+
T Consensus 156 ~P~lLvNGs~GIavG~aT~Ipphn~~evi~~~~~~i~~~~~~~~~l~~~~~~pdfptGg~i~~~~~i~~~y~tg~G-~~~ 234 (738)
T TIGR01061 156 FPNLLINGATGIAAGYATNIPPHNLNEVIDALIYRIDHPNCSVDKLMEIVKGPDFPTGGIIQGEDGISKAYETGKG-KFI 234 (738)
T ss_pred CCceeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCChHHhcccccCCCCCCCcEEECchhhHHheecCCc-eEE
Confidence 999999999999999999999999999999999999999763 45778777776553 34778998 999
Q ss_pred EEEEEEEE----eCceEEEEecCCCCCHHHHHHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHHHh
Q 000459 920 VTGIIEEV----NETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLK 994 (1484)
Q Consensus 920 ~~G~~e~~----~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K 994 (1484)
+||+|+++ ++++|+||||||++|+++|+++|+++++.+ .++|+||+|+|++++|||+|+++++.+++.+++.||+
T Consensus 235 ~rg~~~~e~~~~~~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~~~vrivi~lk~~~~~~~~~~~l~k 314 (738)
T TIGR01061 235 IRAKIEIEVNKNGLNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDANAEKILNFLFK 314 (738)
T ss_pred EEEEEEEEEcCCCCcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCCCceEEEEEECCCCCHHHHHHHHHH
Confidence 99999875 457899999999999999999999999866 6889999999999999999999999999999999999
Q ss_pred HccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecc
Q 000459 995 KFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNN 1074 (1484)
Q Consensus 995 ~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~n 1074 (1484)
+|+||++|++ ||++|+.+ + |+++++++||++|++||+++|+||++|+|+++++++|+|+++++|+. ++++.|.+
T Consensus 315 ~t~l~~~~~~-n~~~~~~~-~-p~~~~l~~il~~~~~~R~~~~~rr~~~~l~k~~~r~~il~g~~~~~~-~id~~i~i-- 388 (738)
T TIGR01061 315 HTDLQINYNF-NMVAIANR-T-PIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAIS-IIDEIIKL-- 388 (738)
T ss_pred hccCcceeee-eEEEEECC-c-ceECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhHH--
Confidence 9999999995 89999864 4 69999999999999999999999999999999999999999999999 55544433
Q ss_pred cchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHH
Q 000459 1075 RKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKL 1154 (1484)
Q Consensus 1075 kkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el 1154 (1484)
++++++..++...+++ .|++++.||+|||+|+|++||.+++++|++|+++|
T Consensus 389 ------------------ir~~~~~~~~~~~l~~-----------~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l 439 (738)
T TIGR01061 389 ------------------IRSSEDKSDAKENLID-----------NFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNEL 439 (738)
T ss_pred ------------------HHcCCCHHHHHHHHHH-----------hcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 2233444434333332 26688899999999999999999999999999999
Q ss_pred HHHHHHHHcc-----CchhHHHHHHHHHHHHH
Q 000459 1155 NEEVDDLRKA-----TPESLWVKDLDALDMQL 1181 (1484)
Q Consensus 1155 ~~ei~~L~~t-----s~~dLW~~DLd~f~~~l 1181 (1484)
+++|++|+.+ ....+|.++|.++.+++
T Consensus 440 ~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kf 471 (738)
T TIGR01061 440 EKKIISLEQIIASEKARNKLLKKQLEEYKKQF 471 (738)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999995 44567788888888776
No 21
>PRK05560 DNA gyrase subunit A; Validated
Probab=100.00 E-value=2.1e-106 Score=1031.46 Aligned_cols=444 Identities=25% Similarity=0.363 Sum_probs=402.3
Q ss_pred cccccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCC---CCceeEEeeccccccccCC-CCccc
Q 000459 696 KEKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQS 770 (1484)
Q Consensus 696 ~~~~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~---~~~Kva~l~G~V~~~~~YH-HGe~S 770 (1484)
++..+++++||+++|+.||||+| .|||||++||||||||||||+|++++++ +++|||||+|+||+ +|| |||+|
T Consensus 4 ~i~~~~~~~~~~~~~~~ya~~~i~~RaiP~~~DGlKPvqRril~~~~~~~~~~~~~~~K~a~~~G~v~~--~YHpHGd~s 81 (805)
T PRK05560 4 RIIPVNIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGNTPDKPYKKSARIVGDVMG--KYHPHGDSA 81 (805)
T ss_pred ceeEeeHHHHHHHHHHHHHHHHhhhccCCchhcCCCcchhHHHHHHHhhCCCCCCCceeehhhhhhHHh--hcCCCchHH
Confidence 46789999999999999999997 9999999999999999999999999985 48999999999997 899 99999
Q ss_pred HHHHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccC
Q 000459 771 LASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYM 849 (1484)
Q Consensus 771 l~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~ 849 (1484)
+|+|||+|||+| |||+|||+|||||||+ ||++||||||||||||++++.||+++|+++|+|+ ||||+++||+|||
T Consensus 82 ~~~a~v~maq~f--~~~~pll~~~GnfGs~--~g~~~Aa~RY~e~rl~~~~~~~~~~~d~~~~~~~~n~d~~~~EP~~~p 157 (805)
T PRK05560 82 VYDALVRMAQDF--SMRYPLVDGQGNFGSI--DGDPAAAMRYTEARMSKIAHELLADIDKETVDFVPNYDGSEQEPTVLP 157 (805)
T ss_pred HHHHHHHHhhhc--cccceeEeCCCCCCCC--CCCchhhhHHHHhhhhHHHHHHHhhcCccccccccCCCCcccCccccc
Confidence 999999999999 6999999999999998 7899999999999999999999999999999999 8999999999999
Q ss_pred CCCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCC----------CCCcc---ccCCCcEEEEcccCCCce
Q 000459 850 PIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME----------PMHPW---YRGFGGTIEKTASKEAGV 916 (1484)
Q Consensus 850 piiP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~----------p~~P~---~~Gf~G~I~~~~~~g~G~ 916 (1484)
|+|||||||||+||||||||+||||||.|||+|++++|+|+++. |+||| +.||+|.+ ..|.+|+|
T Consensus 158 ~~~P~~LvNG~~GIa~G~at~ip~hn~~evi~~~~~~l~~~~~~~~~l~~~~~gpdfptgg~i~~~~~~~-~~~~~g~g- 235 (805)
T PRK05560 158 ARFPNLLVNGSSGIAVGMATNIPPHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIR-EAYRTGRG- 235 (805)
T ss_pred ccCCeeeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCCCCCCccEEECccchh-hheecCCc-
Confidence 99999999999999999999999999999999999999999863 67776 56777744 44667888
Q ss_pred EEEEEEEEEEE---eCceEEEEecCCCCCHHHHHHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHH
Q 000459 917 TYTVTGIIEEV---NETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGL 992 (1484)
Q Consensus 917 ~~~~~G~~e~~---~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L 992 (1484)
+|++||+|++. ++++|+||||||++|+++|+++|+++++.+ .++|+|++|+|++++|+|+|+++++.+++.++++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~~~i~~~~~~~~~~~~~~l 315 (805)
T PRK05560 236 SIVMRAKAEIEEIKGREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESDRDGMRIVIELKRDAVPEVVLNNL 315 (805)
T ss_pred eEEEEEEEEEEecCCCcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCCHHHHHHHH
Confidence 99999999986 478999999999999999999999999855 78899999999999999999999999999999999
Q ss_pred HhHccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEe
Q 000459 993 LKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVV 1072 (1484)
Q Consensus 993 ~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v 1072 (1484)
|++|+|+++|++ ||++++ +| +|+|+++.+||++||+||+++|++|++|+|+++++++|+|+++++|+..+
T Consensus 316 ~~~~~l~~~~~~-n~~~~~-~~-~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~l~g~~~~~~~~------- 385 (805)
T PRK05560 316 YKHTQLQTSFGI-NMLALV-DG-QPKLLNLKEILEAFLEHRKEVITRRTRFELRKAEERAHILEGLLIALDNI------- 385 (805)
T ss_pred HHhcCCeeeeee-eEEEEE-CC-EeEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 999999999997 555555 34 58999999999999999999999999999999999999999999997654
Q ss_pred cccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHH
Q 000459 1073 NNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRD 1152 (1484)
Q Consensus 1073 ~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~ 1152 (1484)
+.|.++ ++++++.+++...+++ .|++++.||+|||+|+|++||++++++|++|++
T Consensus 386 ------d~vI~i--------ir~s~~~~~~~~~L~~-----------~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~ 440 (805)
T PRK05560 386 ------DEVIAL--------IRASPTPAEAKEGLME-----------RFGLSEIQAQAILDMRLQRLTGLERDKIEDEYK 440 (805)
T ss_pred ------HHHHHH--------HHcCCCHHHHHHHHHH-----------hcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Confidence 234444 3445666555554443 277899999999999999999999999999999
Q ss_pred HHHHHHHHHHcc--Cchh---HHHHHHHHHHHHHH
Q 000459 1153 KLNEEVDDLRKA--TPES---LWVKDLDALDMQLD 1182 (1484)
Q Consensus 1153 el~~ei~~L~~t--s~~d---LW~~DLd~f~~~l~ 1182 (1484)
+|++++++|+.+ ++.. +|.++|.++.++|-
T Consensus 441 ~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 441 ELLALIADLKDILASPERLLEIIKEELLEIKEKFG 475 (805)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999 7655 55888888888874
No 22
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=100.00 E-value=1.8e-104 Score=1011.88 Aligned_cols=441 Identities=24% Similarity=0.367 Sum_probs=400.7
Q ss_pred cccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCCC---CceeEEeeccccccccCC-CCcccHH
Q 000459 698 KYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIK---EAKVAQFSGYVSEHSAYH-HGEQSLA 772 (1484)
Q Consensus 698 ~~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~~---~~Kva~l~G~V~~~~~YH-HGe~Sl~ 772 (1484)
..++|++.|.+.|+.||||+| +|||||++||||||||||||+|+++++++ ++||||++|+||+ +|| |||+|+|
T Consensus 2 ~~~~~~~~~~~~~~~ya~~vi~~RaiP~~~DGlKPvqRril~~~~~~~~~~~~~~~K~a~~~G~v~~--~YHpHGd~s~~ 79 (800)
T TIGR01063 2 VPVNIEEEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGLTPDKPYKKSARIVGDVMG--KYHPHGDSAIY 79 (800)
T ss_pred eeecHHHHHHHHHHHHHHHHHhhccCCchhcCCCchhhhhhHhHHhhCCCCCCCceeehhhhhhHhh--ccCCCchHHHH
Confidence 467999999999999999999 99999999999999999999999999865 8999999999996 899 9999999
Q ss_pred HHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCC
Q 000459 773 STILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPI 851 (1484)
Q Consensus 773 ~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~pi 851 (1484)
+|||+|||+| |||+|||+|||||||+ ||++||||||||||||++++.||+++|+++|+|+ ||||+++||+||||+
T Consensus 80 ~a~v~maq~f--~~~~pl~~~~GnfGs~--~g~~~Aa~RY~e~rls~~~~~~~~~~d~~~v~~~~n~d~~~~EP~~lp~~ 155 (800)
T TIGR01063 80 DTLVRMAQDF--SLRYPLVDGQGNFGSI--DGDPPAAMRYTEARLTKIAEELLRDIDKETVDFVPNYDGSEQEPTVLPSR 155 (800)
T ss_pred HHHHHHhhhc--cccceeeecCCCCCCC--CCCchhhHHHHHhhhhHHHHHHhhccCccccccccCCCCcccCccccccc
Confidence 9999999999 7999999999999996 7899999999999999999999999999999999 899999999999999
Q ss_pred CceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCC----------CCCCcc---ccCCCcEEEEcccCCCceEE
Q 000459 852 IPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMM----------EPMHPW---YRGFGGTIEKTASKEAGVTY 918 (1484)
Q Consensus 852 iP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~----------~p~~P~---~~Gf~G~I~~~~~~g~G~~~ 918 (1484)
|||||||||+||||||||+||||||.|||+|++++|+|+++ .|+||| +.|+.|.+ ..|.+|+| +|
T Consensus 156 ~P~lLvNG~~GIa~G~at~ip~hn~~evi~~~~~~~~~~~~~~~~l~~~~~gpdfp~gg~i~~~~g~~-~~y~~g~g-~~ 233 (800)
T TIGR01063 156 FPNLLVNGSSGIAVGMATNIPPHNLGEIIDALLAYIDNPDISIQELLEVIKGPDFPTGGIILGRSGIR-SAYETGRG-SI 233 (800)
T ss_pred cchheecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCCCccEEECccchh-hhhccCCc-eE
Confidence 99999999999999999999999999999999999999976 389999 68888855 44667888 99
Q ss_pred EEEEEEEEE----eCceEEEEecCCCCCHHHHHHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHHH
Q 000459 919 TVTGIIEEV----NETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLL 993 (1484)
Q Consensus 919 ~~~G~~e~~----~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~ 993 (1484)
++||+|+++ ++++|+||||||++|+++|++.|.++++.+ .++|+||+|+|+++||+|+|+++++.+++.+++.||
T Consensus 234 ~~~~~~~~~~~~~~~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~~~i~~k~~~~~~~~~~~l~ 313 (800)
T TIGR01063 234 VIRARAEIEEDSKGREAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLY 313 (800)
T ss_pred EEEEEEEEEeccCCCcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCCCceEEEEEeCCCCCHHHHHHHHH
Confidence 999999875 357899999999999999999999999866 788999999999999999999999999999999999
Q ss_pred hHccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEec
Q 000459 994 KKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVN 1073 (1484)
Q Consensus 994 K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~ 1073 (1484)
|+|+||++|++ ||++|+. | +|+|.++.+||++|++||+++|++|++|+|+++++++|+|+++++++..+
T Consensus 314 k~t~l~~~~~~-n~~~~~~-~-~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~~~g~~~~~~~~-------- 382 (800)
T TIGR01063 314 KQTQLQVSFGI-NMLALVK-G-LPKVLNLKELLEAFVEHRKDVITRRTIFELRKAEERAHILEGLLIALDNI-------- 382 (800)
T ss_pred Hhcccceeeee-eEEEEEC-C-EeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 99999999997 8888874 4 58999999999999999999999999999999999999999999977654
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHH
Q 000459 1074 NRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDK 1153 (1484)
Q Consensus 1074 nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~e 1153 (1484)
+.+.++ ++++++.+++...+++ .+++++.||+|||+|+|++||++++++|++|+++
T Consensus 383 -----d~vi~~--------ir~~~~~~~~~~~L~~-----------~~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~ 438 (800)
T TIGR01063 383 -----DEVIAL--------IRASQNTEEAKTRLVE-----------RFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKE 438 (800)
T ss_pred -----hHHHHH--------HHhCCCHHHHHHHHHH-----------hcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Confidence 334444 3455666656555543 2678999999999999999999999999999999
Q ss_pred HHHHHHHHHcc--CchhH---HHHHHHHHHHHH
Q 000459 1154 LNEEVDDLRKA--TPESL---WVKDLDALDMQL 1181 (1484)
Q Consensus 1154 l~~ei~~L~~t--s~~dL---W~~DLd~f~~~l 1181 (1484)
+++++++|+.+ +...+ ..++|.++.++|
T Consensus 439 l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkf 471 (800)
T TIGR01063 439 LLELIADLEDILASEERVLEIIREELEEIKEQF 471 (800)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999988 55544 466777776665
No 23
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=4.1e-104 Score=987.61 Aligned_cols=440 Identities=22% Similarity=0.316 Sum_probs=393.2
Q ss_pred cccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCCC---CceeEEeeccccccccCC-CCcccHH
Q 000459 698 KYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIK---EAKVAQFSGYVSEHSAYH-HGEQSLA 772 (1484)
Q Consensus 698 ~~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~~---~~Kva~l~G~V~~~~~YH-HGe~Sl~ 772 (1484)
..++|++|++++|+.||||+| .|||||++||||||||||||+|+++++++ ++||||+||+|++ +|| |||+|+|
T Consensus 2 ~~~~~~~~~~~~yl~ya~~vi~~RalP~v~DGLKPvqRrilyam~~~~l~~~~~~~K~Ar~vG~v~g--kyHPHGd~s~y 79 (735)
T TIGR01062 2 ENIDLGNFTEEAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSARTVGDVLG--KYHPHGDSACY 79 (735)
T ss_pred ccccHHHHHHHHHHHHHHHHhhcccCCchhcCCCcchhhhhHhHHhcCCCcCCCceeehhhHHHHHh--hcCCCchHHHH
Confidence 468999999999999999999 99999999999999999999999999864 6789999999999 899 9999999
Q ss_pred HHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCC
Q 000459 773 STILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPI 851 (1484)
Q Consensus 773 ~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~pi 851 (1484)
+|||+|||+| |||||||+||||||||+ ||++|||||||||||+++++.||+++|+++|+|+ ||||+.+||+||||+
T Consensus 80 ~a~V~mAQ~f--s~~~pLvdg~GnFGs~d-g~~~~AAmRYte~rl~~~a~~ll~~~d~~~v~~~~n~Dg~~~EP~~lp~~ 156 (735)
T TIGR01062 80 EAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLEELGQGTVDFRPNFDGTLLEPVILPAR 156 (735)
T ss_pred HHHHHHhhhc--ccCceeEecCCCCCCCC-CCChhHhHHHHHhhhHHHHHHHhhccCccccccccCCCCCccCCcccccc
Confidence 9999999999 79999999999999994 7799999999999999999999999999999999 899999999999999
Q ss_pred CceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCC--CCCccccC--C--CcEEE-------EcccCCCceEE
Q 000459 852 IPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME--PMHPWYRG--F--GGTIE-------KTASKEAGVTY 918 (1484)
Q Consensus 852 iP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~--p~~P~~~G--f--~G~I~-------~~~~~g~G~~~ 918 (1484)
|||||||||+||||||||+||||||.|||+||+++|+++++. +|.||++| | .|.|. .+|.||+| +|
T Consensus 157 ~P~lLvNG~~GIavGmaT~IpphN~~ev~~a~~~~i~~~~~~~~~l~~~~~gPDfptgG~ii~~~~~i~~~y~tg~G-~~ 235 (735)
T TIGR01062 157 LPNILLNGTTGIAVGMATDIPPHNLHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAEIIDKAEEIRKIYETGRG-SF 235 (735)
T ss_pred cchhhhcCCcceEeeeecCCCCCCHHHHHHHHHHHHhCCCCCHHHHhhhccCCCCCCCcEEecCchhHHHHhccCCc-eE
Confidence 999999999999999999999999999999999999999864 67899888 4 57763 35788998 99
Q ss_pred EEEEEEEEEeCceEEEEecCCCCCHHHHHHHHHHHHhcC-CccccccccccCC-CceEEEEEeC-chhhHHHHHHHHHhH
Q 000459 919 TVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDD-TTVDFEVFLS-EESMMRTKQEGLLKK 995 (1484)
Q Consensus 919 ~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~-~~v~f~I~lk-~~~~~~~~~e~L~K~ 995 (1484)
++||+|++.+. +|+||||||++|+++|+++|+++++.+ .++|+||+|+|++ ++|||+|+++ ++..++.+++.||++
T Consensus 236 ~~r~~~~~e~~-~ivItelP~~v~~~~~~e~i~~~~~~kk~~~i~d~~Des~~~~~vr~vi~~k~~~~~~~~~~~~L~~~ 314 (735)
T TIGR01062 236 RMRARWKKEDG-QIVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDHENPIRVVIVPRSNRVDPDIVMEHLFAT 314 (735)
T ss_pred EEEEEEEEECC-eEEEEeCCCcccHHHHHHHHHHHHhcCCCcceeehhhcCCCcCcEEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999998764 899999999999999999999999866 7889999999997 4899999998 557888899999999
Q ss_pred ccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEeccc
Q 000459 996 FKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNR 1075 (1484)
Q Consensus 996 fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nk 1075 (1484)
|+|+++|++ ||++++.+|+ |+..++.+||++|++||+++|+||++|+|+++++++|+|++.+...+++
T Consensus 315 t~L~~~~~~-n~~~i~~~~~-p~~~~l~~il~~~~~~R~~~~~rR~~~~l~k~~~rl~il~Gl~ia~~~i---------- 382 (735)
T TIGR01062 315 TDLEKSYRL-NMNMIGLDNV-PAVKNLLEILQEWLVFRRNTVIRRLTYRLNKVLQRLHILEGLRIAFLNI---------- 382 (735)
T ss_pred cCCeeeecc-cEEEEEeCCe-eeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------
Confidence 999999997 5666555566 5678999999999999999999999999999999999999999888775
Q ss_pred chHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHH
Q 000459 1076 KRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLN 1155 (1484)
Q Consensus 1076 kk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~ 1155 (1484)
|.|+.+. +.+. ++...++ +.|++++.|++|||+|+|++||++|..+|++|+++|+
T Consensus 383 ---DevI~iI--------R~s~---~~k~~L~-----------~~f~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~ 437 (735)
T TIGR01062 383 ---DEVIEII--------REED---EPKTILM-----------ERFKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELE 437 (735)
T ss_pred ---HHHHHHH--------HcCh---hhHHHHH-----------HhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 3344552 2332 2223333 3488999999999999999999999999999999999
Q ss_pred HHHHHHHcc--CchhHHH---HHHHHHHHHH
Q 000459 1156 EEVDDLRKA--TPESLWV---KDLDALDMQL 1181 (1484)
Q Consensus 1156 ~ei~~L~~t--s~~dLW~---~DLd~f~~~l 1181 (1484)
++++.|+.+ ++..+|. ++|.++.+++
T Consensus 438 ~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~ 468 (735)
T TIGR01062 438 KERAILEKILKSERELNQLVKKEIQADATKY 468 (735)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 999999998 6677765 4444444443
No 24
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=4.6e-102 Score=991.73 Aligned_cols=446 Identities=22% Similarity=0.321 Sum_probs=404.8
Q ss_pred cccccccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCC---CCCceeEEeeccccccccCC-CCc
Q 000459 694 DQKEKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAKVAQFSGYVSEHSAYH-HGE 768 (1484)
Q Consensus 694 d~~~~~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l---~~~~Kva~l~G~V~~~~~YH-HGe 768 (1484)
+.++.+++|+++|.++|+.||||+| .|||||++||||||||||||+|+++++ ++++||||+||+|++ +|| |||
T Consensus 10 ~~~i~~~~~~~~~~~~yl~Ya~~vi~~RAlPd~rDGLKPvqRrILyam~~~~~~~~~~~~K~A~ivG~v~g--~YHPHGd 87 (957)
T PRK13979 10 DNNIIKIPLEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILG--KYHPHGD 87 (957)
T ss_pred cCceeeecHHHHHHHHHHHhHHHHHHhhcCCccccCCCchHhHHHHHHHHcCCCCCCCceeehhhHHhHHh--ccCCCch
Confidence 3467889999999999999999999 999999999999999999999999985 579999999999999 999 999
Q ss_pred ccHHHHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccc
Q 000459 769 QSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTW 847 (1484)
Q Consensus 769 ~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~ 847 (1484)
+|+|+|||+|||+| |||+|||+|||||||+ +|++||||||||||||++++.||.++|+++|+|+ ||||++.||+|
T Consensus 88 ~siy~alvrmaQ~f--~~~~plidg~GnFGs~--dgd~~AA~RYte~rl~~~a~~~~~d~d~~~v~~~~n~d~~~~EP~v 163 (957)
T PRK13979 88 SSVYDAMVILAQDF--TTRMPLIDGHGNWGSI--DGDSAAAMRYTEARLTPIAMEMLRDIDKDVVNMVDNYSDSEKEPEV 163 (957)
T ss_pred HHHHHHHHHHhhhc--cccceeEeCCCCCCCC--CCCchhhhhhhhhcchHHHHHHhhccCccccccccCCCCCeecccc
Confidence 99999999999999 7999999999999997 7899999999999999999999999999999999 99999999999
Q ss_pred cCCCCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCC--CCCCccccCC---CcEEE-------EcccCCCc
Q 000459 848 YMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMM--EPMHPWYRGF---GGTIE-------KTASKEAG 915 (1484)
Q Consensus 848 y~piiP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~--~p~~P~~~Gf---~G~I~-------~~~~~g~G 915 (1484)
|||+|||||||||+|||||||||||||||.|||+|++++|+++++ .++.||++|+ +|-|. ..|.||+|
T Consensus 164 lp~~~P~lLvNG~~GIavG~aT~Ipphnl~evi~a~~~~i~~~~~~~~~l~~~~~gpDfptGg~i~~~~~i~~~y~tg~G 243 (957)
T PRK13979 164 LPARYPNLLVNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLLSAYETGEG 243 (957)
T ss_pred ccccCCceeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCHHHHhhhccCCCCCCCeEEECchhHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999998 4688998886 44442 34678998
Q ss_pred eEEEEEEEEEEE----eCceEEEEecCCCCCHHHHHHHHHHHHhcC-----CccccccccccCCCceEEEEEeCchhh--
Q 000459 916 VTYTVTGIIEEV----NETTLRIKELPIRRWTQDYREFLESIIDQN-----DSFIRGFRQYSDDTTVDFEVFLSEESM-- 984 (1484)
Q Consensus 916 ~~~~~~G~~e~~----~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-----~~~I~d~~d~s~~~~v~f~I~lk~~~~-- 984 (1484)
++++||+++++ ++++|+||||||++|+++|+++|+.|+..+ .++|+|++|+|+++|+||+|+|+++.+
T Consensus 244 -~~~~r~k~~~e~~~~~~~~ivitEiPy~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~desd~~g~rivi~lk~~~~~~ 322 (957)
T PRK13979 244 -KVTLRAKTKIEKLENGRLGIVITEFPYRRNKAKLLQTISEMTADKKHSKALENISDIRDESDRNGIRAVIEFKKSADED 322 (957)
T ss_pred -CEEEEEEEEEEEcCCCceEEEEEccCCcccHHHHHHHHHHHHhcccccccCccccchhhccCCCceEEEEEECCCCCcc
Confidence 99999999875 356799999999999999999999998644 588999999999999999999999866
Q ss_pred -HHHHHHHHHhHccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 000459 985 -MRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFIL 1063 (1484)
Q Consensus 985 -~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~ 1063 (1484)
++.++++||++|+||++|++ ||++++ +|++ +.+++++||++|++||+++|+||.+|+|+++++++|+|++.++++.
T Consensus 323 ~~~~v~~~L~~~t~l~~~~~~-n~~~~~-~~~p-~~~~l~~il~~~~~~r~~~~~rr~~~~l~k~~~r~~i~eGl~~a~~ 399 (957)
T PRK13979 323 VAEKVLKYLYKKTDLQCNISF-NMVALA-DGKP-ETMGLKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIG 399 (957)
T ss_pred cHHHHHHHHHHhCCCeeEeee-eEEEEE-CCEE-EEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999997 888887 6785 5579999999999999999999999999999999999999999887
Q ss_pred heecceeEecccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHH
Q 000459 1064 GVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEK 1143 (1484)
Q Consensus 1064 ~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~ee 1143 (1484)
.+ |.|.++ ++.+++.+++...+++ .|++++.|+++||+|+|++||..+
T Consensus 400 ~i-------------d~vi~~--------ir~s~~~~~a~~~l~~-----------~f~~s~~qa~aIl~mrL~~Lt~le 447 (957)
T PRK13979 400 IM-------------DEIIKT--------IRSSKSKKDASENLIE-----------KFGFTDEQAEAILELMLYRLTGLE 447 (957)
T ss_pred hH-------------HHHHHH--------HHcCCCHHHHHHHHHH-----------HhCCCHHHHHHHHhCcHHhhhhhH
Confidence 65 335555 4567777777766654 388999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcc--CchhHH---HHHHHHHHHHH
Q 000459 1144 VQGLLADRDKLNEEVDDLRKA--TPESLW---VKDLDALDMQL 1181 (1484)
Q Consensus 1144 vekL~~E~~el~~ei~~L~~t--s~~dLW---~~DLd~f~~~l 1181 (1484)
+++|++|+++|+++|++|+.+ ++..+| .++|.++.++|
T Consensus 448 ~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~ky 490 (957)
T PRK13979 448 IVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKY 490 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998 666665 67777777766
No 25
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-101 Score=958.66 Aligned_cols=443 Identities=27% Similarity=0.385 Sum_probs=399.8
Q ss_pred ccccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCC---CCceeEEeeccccccccCC-CCcccH
Q 000459 697 EKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQSL 771 (1484)
Q Consensus 697 ~~~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~---~~~Kva~l~G~V~~~~~YH-HGe~Sl 771 (1484)
+.++++++|++++|+.||||+| .||||+++||||||||||||+|++++++ +++|||++||+|+| +|| |||+|+
T Consensus 8 i~~v~i~~e~~~syl~YAmsVIv~RALPdVRDGLKPVqRRILYaM~e~gl~~d~~~kKsAriVGdvmG--kyHPHGDssi 85 (804)
T COG0188 8 IEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDKKYKKSARIVGDVMG--KYHPHGDSSI 85 (804)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhccCCccccCCccHHHHHHHHHHHcCCCCCCCchhhhhhHHhhcc--cCCCCCchHH
Confidence 7899999999999999999999 7999999999999999999999999975 57999999999999 899 999999
Q ss_pred HHHHHHhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCC
Q 000459 772 ASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMP 850 (1484)
Q Consensus 772 ~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~p 850 (1484)
|+|||+||||| |+||||++|||||||+ +||+||||||||||||++++.|+.++|+++|+|. ||||+.+||+|||+
T Consensus 86 YdalVRMAQdf--s~RypLVdgqGNFGSi--DgD~aAAMRYTEaRLs~ia~elL~di~kdtVdf~~NyDg~~~EP~VLPa 161 (804)
T COG0188 86 YDALVRMAQDF--SLRYPLVDGQGNFGSI--DGDPAAAMRYTEARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPA 161 (804)
T ss_pred HHHHHHHhhhh--hhcCcceecCCCCCCC--CCChHHHHHHHHhhchHHHHHHHhccccCeeecccCCCCCccCCccccc
Confidence 99999999999 5999999999999999 5799999999999999999999999999999998 99999999999999
Q ss_pred CCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCC----------CCCccccCC--CcEEEEcccCCCceEE
Q 000459 851 IIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME----------PMHPWYRGF--GGTIEKTASKEAGVTY 918 (1484)
Q Consensus 851 iiP~vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~----------p~~P~~~Gf--~G~I~~~~~~g~G~~~ 918 (1484)
.|||||||||+|||||||||||||||.|||+||+++|++++++ |+|||...+ ...|...|.||+| ++
T Consensus 162 ~~PnLLvNGssGIAVGmATnIPPHNl~Evida~~~li~np~~~~~~lm~~i~GPDFPTgg~I~g~~~I~~aY~tGrG-~i 240 (804)
T COG0188 162 RFPNLLVNGSSGIAVGMATNIPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIIIGRSGIREAYETGRG-SI 240 (804)
T ss_pred cCCeeEeccCCceecceecCCCCCCHHHHHHHHHHHHcCCCCchhhhhhccCCCCCCCcceEecchhhHHHHccCCc-eE
Confidence 9999999999999999999999999999999999999999863 889994322 2236667888999 99
Q ss_pred EEEEEEEEE----eCceEEEEecCCCCCHHHHHHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHHH
Q 000459 919 TVTGIIEEV----NETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLL 993 (1484)
Q Consensus 919 ~~~G~~e~~----~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~ 993 (1484)
.+||+++++ ++++|+||||||++|+++++++|++++..+ ..+|++++|+|+++||||+|+++++..++.+++.||
T Consensus 241 ~vRa~~~iE~~~~gr~~IvItEiPyqvnka~lie~Iaelv~~kki~gis~vrDEsdr~giRivIelk~~~~~~~vln~Lf 320 (804)
T COG0188 241 RVRAKAEIEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLF 320 (804)
T ss_pred EEEEEEEEEecCCCceEEEEEecCccccHHHHHHHHHHHHhcCCccCcccccccccCCCeEEEEEECCccchHHHHHHHH
Confidence 999999885 356899999999999999999999999877 888999999999999999999999988889999999
Q ss_pred hHccceeecccceEEEEcCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEec
Q 000459 994 KKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVN 1073 (1484)
Q Consensus 994 K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~ 1073 (1484)
|+|.||++|++ ||+++.. |+ |+++++.+||.+|+.||+++++||.+|+|++++.++|+|++++++++++
T Consensus 321 k~T~LQ~~f~~-nm~ai~~-~~-P~~~~L~~iL~~~~~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~~i-------- 389 (804)
T COG0188 321 KLTDLQTSFNV-NMLALVN-GR-PKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALLNI-------- 389 (804)
T ss_pred HhchHHhhhCc-eeEEecC-Cc-ceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 99999999997 5655554 45 8999999999999999999999999999999999999999999999987
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHH
Q 000459 1074 NRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDK 1153 (1484)
Q Consensus 1074 nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~e 1153 (1484)
+.|+.+ ++.+++..++...+++ .|++++.|+++||+|+|++||..+++++++|+++
T Consensus 390 -----DevI~i--------Ir~s~~~~~a~~~L~~-----------~f~lse~Qa~aIl~mrL~rLt~le~~~i~~E~~~ 445 (804)
T COG0188 390 -----DEVIEI--------IRESKDKPEAKEELMA-----------RFGLSEKQAEAILDLRLRRLTGLEEEKIEKELKE 445 (804)
T ss_pred -----HHHHHH--------HHcCCCchHHHHHHHH-----------HcCCcHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Confidence 446666 4556665555544443 3889999999999999999999999999999999
Q ss_pred HHHHHHHHHcc--CchhHH---HHHHHHHHHHH
Q 000459 1154 LNEEVDDLRKA--TPESLW---VKDLDALDMQL 1181 (1484)
Q Consensus 1154 l~~ei~~L~~t--s~~dLW---~~DLd~f~~~l 1181 (1484)
|++++++|+.. +++.+| .++|.++.++|
T Consensus 446 L~~~i~~l~~iL~s~~~~~~~i~~eL~~~~~k~ 478 (804)
T COG0188 446 LEKEIADLEKILASEERLLDIIKKELLEIKKKF 478 (804)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999998 555554 34444444443
No 26
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=2.9e-98 Score=916.66 Aligned_cols=417 Identities=24% Similarity=0.350 Sum_probs=367.1
Q ss_pred chHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCCCCceeEEeeccccccccCC-CCcccHHHHHHHh
Q 000459 701 KYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYH-HGEQSLASTILGM 778 (1484)
Q Consensus 701 ~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~~~~Kva~l~G~V~~~~~YH-HGe~Sl~~tiv~m 778 (1484)
+|++.++++|+.||||+| .|||||++||||||||||||+|++++.++++||||++|+|+ +|| |||+|+|+|||+|
T Consensus 3 ~i~~~~~~~fl~YA~~VI~~RAlP~v~DGLKPvqRrIL~am~~~~~~~~~K~A~ivG~v~---~YHPHGd~SiydalV~m 79 (635)
T PRK09631 3 DIKTLFKDNFLQYASYVIKDRAIPDVIDGLKPVQRRILHSLFEMHDGKFHKVANVVGNTM---KYHPHGDASIYEALVNL 79 (635)
T ss_pred cHHHHHHHHHHhhhHHhhhhccCCchhhCCCcchhhhhHhhhhccCCCceeeeeeccccc---ccCCCchHHHHHHHHHh
Confidence 588999999999999998 99999999999999999999999999999999999999995 799 9999999999999
Q ss_pred hcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCCCceeee
Q 000459 779 AQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLV 857 (1484)
Q Consensus 779 AQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLv 857 (1484)
||+ +|||+||||||||+ +|++||||||||||||++++.||. ++++++|+ ||||+.+||+||||+||||||
T Consensus 80 aq~------~~Lid~qGnFGs~l-~Gd~aAA~RYte~rLs~~a~~~~~--~~~~v~~~~n~Dg~~~EP~~lp~~~P~lLv 150 (635)
T PRK09631 80 ANK------DLFIDKQGNFGNLF-TGDPASAARYIECRLTPLAKEVLY--NKEITEYEPSYDGRNNEPLCLPAKIPVILI 150 (635)
T ss_pred cCC------cceeecCCCCCCCC-CCChhhhHHHHHHhhhHHHHHHhc--CcCcccCCcCCCCCccCCccccccCceeee
Confidence 985 69999999999997 469999999999999999999997 46799999 899999999999999999999
Q ss_pred cCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCCCCCccccCCCcEEE-EcccCCCceEEEEEEEEEEEeCceEEEEe
Q 000459 858 NGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIE-KTASKEAGVTYTVTGIIEEVNETTLRIKE 936 (1484)
Q Consensus 858 NGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~p~~P~~~Gf~G~I~-~~~~~g~G~~~~~~G~~e~~~~~~i~ITE 936 (1484)
|||+|||||||||||||||.|||+|++++|+|+++.+ .|||+- .|.|. ..|.+|+| +|++||+++.++.++|+|||
T Consensus 151 NGa~GIavG~aT~IpphN~~evi~a~~~~l~~~~~~~-~PdFpt-Ggii~~~~Y~tG~G-~~~~r~~~~~~~~~~ivItE 227 (635)
T PRK09631 151 QGAEGIAVGMATKILPHNFNEILQAVKSELLGESFAL-YPDFPT-GGIVDVSEYADGNG-KVLVRAKIETKDEKTIVIRE 227 (635)
T ss_pred cCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCccc-cCCCCC-CcEEEeeeeecCCc-eEEEEEEEEEecCCEEEEEe
Confidence 9999999999999999999999999999999999864 688731 24443 34677888 99999999998889999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCc
Q 000459 937 LPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGV 1015 (1484)
Q Consensus 937 LP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gk 1015 (1484)
|||++||++|+++|+++++.+ +. |++++|+|++ +|+|+|+|+++.+++.++++||++|+||++|++|||+++|..
T Consensus 228 iP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~-~v~i~i~l~~~~~~~~~~~~Lyk~t~lq~s~~~n~~~i~~~~-- 303 (635)
T PRK09631 228 IPFGTTTESLIASIEKAARKGKIK-ISSINDYTAE-NVEIEIKLPRGVYASEVIEALYAYTDCEVSISVNLLVIKDRY-- 303 (635)
T ss_pred CCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCC-cEEEEEEECCCCCHHHHHHHHHHhcCceeEeeeeEEEEECCc--
Confidence 999999999999999999765 44 9999999886 699999999999999999999999999999999999999854
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCC
Q 000459 1016 IKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELL--KLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP 1093 (1484)
Q Consensus 1016 i~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~--~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~ 1093 (1484)
|+++++.+||++|++||++++++|.+++|.++++++| .|++... ...+++.|... + ..+-+.+.......||
T Consensus 304 -p~~~~l~~il~~~~~~r~~vl~rr~~~~l~k~~~r~h~~~legl~i--~~~i~~~i~~~-~-~~~~v~~~i~~~~~~~- 377 (635)
T PRK09631 304 -PVIYTVTDIIKFHAEHLQKVLKMELELERAKLLEKIFAKTLEQIFI--EERIYKRIETI-S-SEEDVISIVLSELKPF- 377 (635)
T ss_pred -CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHh--hhhHHHHHHhh-c-CHHHHHHHHHhccchh-
Confidence 6789999999999999999999999999999999999 6888744 34444333222 1 2233444433333332
Q ss_pred CCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHcc
Q 000459 1094 KNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKA 1164 (1484)
Q Consensus 1094 ~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~t 1164 (1484)
...+. .++|+.|+++||+|+|++||.++++++++|+++|+++|++|+..
T Consensus 378 ---------~~~l~-------------~~~t~~qa~ail~mrl~rlt~~e~~k~~~e~~~l~~~i~~~~~~ 426 (635)
T PRK09631 378 ---------KEELS-------------RDVTEEDIENLLKIPIRRISLFDIDKNQKEIRILNKELKSVEKN 426 (635)
T ss_pred ---------hHhhh-------------cCCCHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 14889999999999999999999999999999999999998766
No 27
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=4.4e-95 Score=896.24 Aligned_cols=439 Identities=22% Similarity=0.298 Sum_probs=374.0
Q ss_pred ccchHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCCCCceeEEeeccccccccCC-CCcccHHHHHH
Q 000459 699 YIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYH-HGEQSLASTIL 776 (1484)
Q Consensus 699 ~~~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~~~~Kva~l~G~V~~~~~YH-HGe~Sl~~tiv 776 (1484)
...+++.+.++|+.||||++ .|||||++||||||||||||+|++++.++++||||++|+|| +|| |||+|||+|||
T Consensus 20 ~~~l~~~~~~~fLdYA~yVI~~RAiP~v~DGLKPvQRRIL~am~~~~~~~~~KvA~ivG~v~---~YHPHGD~SiydaiV 96 (869)
T PRK12758 20 LTHVSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKEMDDGRYNKVANVVGHTM---QYHPHGDASIGDALV 96 (869)
T ss_pred cccHHHHHHHHHHhhhHhhhhcccCCchhcCCCcchhhhhHhhhhcCCCCceeEeeeehhhh---ccCCCchHHHHHHHH
Confidence 56899999999999999998 99999999999999999999999999999999999999995 799 99999999999
Q ss_pred HhhcccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhh-hCCCCCcCccccc-CCCCCccCccccCCCCce
Q 000459 777 GMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRF-LFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPT 854 (1484)
Q Consensus 777 ~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~-lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~ 854 (1484)
+|||++ +||+||||||||+. |++||||||||||||++++. ||+ +++++|+ ||||+.+||+|||+.|||
T Consensus 97 ~MAQ~~------~Lid~qGNFGsi~~-Gd~aAA~RYieaRLs~~a~~~l~~---~~~vd~~~nyDg~~~EP~~LP~k~P~ 166 (869)
T PRK12758 97 QLGQKD------LLIDTQGNWGNILT-GDGAAAPRYIEARLSKFALEVVFN---PKTTEWQLSYDGRKKEPVTLPVKFPL 166 (869)
T ss_pred HHhCcC------cEEeccCCCCCCCC-CCcccchhhHhhhhhHHHHHHcCC---ccccCCCcCCCCcccccccccCcCce
Confidence 999983 69999999999974 79999999999999999997 563 4568887 999999999999999999
Q ss_pred eeecCCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCCCCCccccCCCcEEE-EcccCCC-ceEEEEEEEEEEEeCceE
Q 000459 855 VLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIE-KTASKEA-GVTYTVTGIIEEVNETTL 932 (1484)
Q Consensus 855 vLvNGa~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~p~~P~~~Gf~G~I~-~~~~~g~-G~~~~~~G~~e~~~~~~i 932 (1484)
||||||+||||||||+||||||.|||+|++++|+|+++. +.|||+ ..|.|. ..|.+|+ |++|++||+++..++++|
T Consensus 167 lLvNGs~GIAvG~aT~IpPHN~~Evida~~~~l~~~~~~-~~PDFp-TGgii~~~~y~~G~~~G~i~vrgkie~~~~~~i 244 (869)
T PRK12758 167 LLAQGAEGIAVGLSTKILPHNFNELIDASIAYLKGKEFK-LYPDFP-TGGIIDVSNYNDGERGGRVRVRAKIEKLDKKTL 244 (869)
T ss_pred eeeccCcceeeccccCCCCCCHHHHHHHHHHHhcCCCCC-CCCCCC-CCcEEEeeecccCccceEEEEEEEEEEcCCCEE
Confidence 999999999999999999999999999999999999986 689984 124443 2355665 349999999998889999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHhcC-CccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEc
Q 000459 933 RIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFD 1011 (1484)
Q Consensus 933 ~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd 1011 (1484)
+||||||++||++|++.|.++++.+ +. |++++|+|+ .+|+|+|+|+++.+++.++++||++|+||++|++|||+++|
T Consensus 245 vItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~-~~vrivI~lk~~~~~~~~~~~Ly~~T~lq~s~s~n~~vi~d 322 (869)
T PRK12758 245 VITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTA-ADVEILVHLAPGVSPDKTIDALYAFTDCEVSISPNACVIID 322 (869)
T ss_pred EEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCC-CceEEEEEeCCCCCHHHHHHHHHhhcCceeEeeeeEEEEEC
Confidence 9999999999999999999998855 44 999999877 56999999999999999999999999999999999999887
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCC
Q 000459 1012 SKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTP 1091 (1484)
Q Consensus 1012 ~~Gki~ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~ 1091 (1484)
. + |+|+++.+||++|++||+++++||.+++|+++++++|++.....||..-|-..|. ..+.+++.+..|. .+|.|
T Consensus 323 ~--~-P~~~~l~eiL~~~~~~r~~vl~rr~~~~l~k~~er~hi~~le~i~i~d~Ii~~Ir-~s~~~~~a~~~l~-~~~~p 397 (869)
T PRK12758 323 N--K-PHFLGVSDILRRSTDHTVSLLKQELEIRLSELEEQWHFASLEKIFIEERIYKEIE-EAETWEAVIEAID-KGLEP 397 (869)
T ss_pred C--e-eeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHH-cCCCHHHHHHHHH-Hhccc
Confidence 5 3 8999999999999999999999999999999999999965444554321111111 2223344444442 24444
Q ss_pred CCCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHcc--CchhH
Q 000459 1092 FPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKA--TPESL 1169 (1484)
Q Consensus 1092 ~~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~t--s~~dL 1169 (1484)
+... + .-.+|+.|+++||+|+|++||..+++++++|+++|+++|++|+.. +-.++
T Consensus 398 ~~~~----------l-------------~r~lte~qa~aIlemrL~rlt~le~~k~~~e~~~l~~~i~~~~~~L~~l~~~ 454 (869)
T PRK12758 398 FKKQ----------F-------------IREVTEDDIVRLTEIKIKRISKFDSDKADELIARLEAEIAEVKHHLAHLTDY 454 (869)
T ss_pred chhh----------h-------------cCCCCHHHHHHHHHhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4111 0 013899999999999999999999999999999999999999877 44445
Q ss_pred HHHHHHHHHHHHH
Q 000459 1170 WVKDLDALDMQLD 1182 (1484)
Q Consensus 1170 W~~DLd~f~~~l~ 1182 (1484)
-.++|.++.+++-
T Consensus 455 ii~el~~i~~kyg 467 (869)
T PRK12758 455 AIAYFTNLKKKYG 467 (869)
T ss_pred HHHHHHHHHHHhC
Confidence 5666666666653
No 28
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=9.2e-95 Score=842.03 Aligned_cols=421 Identities=20% Similarity=0.297 Sum_probs=378.9
Q ss_pred chHHHHHHHHHHHHHHhh-ccccCccccCCCCccceehhhhhcCCCCCCceeEEeeccccccccCCCCcccHHHHHHHhh
Q 000459 701 KYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMA 779 (1484)
Q Consensus 701 ~~~dfi~~eli~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~~~~l~~~~Kva~l~G~V~~~~~YHHGe~Sl~~tiv~mA 779 (1484)
++++.+.+.|+.||||++ .|||||++||||||||||||+|++++.++++|||||+|+|++ .|||||+|||+|||+||
T Consensus 3 ~i~~~~~~~fl~YA~yVI~~RAIPdv~DGLKPVQRRILyam~~~~~~~~~KvA~ivG~~m~--yhpHGDaSiydAlV~MA 80 (479)
T PRK09630 3 DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMDDGKMHKVANIAGRTMA--LHPHGDAPIVEALVVLA 80 (479)
T ss_pred cHHHHHHHHHHhhhHHHhhcccCCccccCCCCchhhhhhhhhhcCCCCceeeeeehhcccc--cCCCchHHHHHHHHHhc
Confidence 588999999999999998 999999999999999999999999999999999999999986 45599999999999999
Q ss_pred cccccCCcccccccCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCccccc-CCCCCccCccccCCCCceeeec
Q 000459 780 QDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVN 858 (1484)
Q Consensus 780 Q~f~Gsnn~~Ll~~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvN 858 (1484)
|+ +|||+||||||||.+ |++||||||||||||++++.|+- +.++|+|+ ||||+.+||+||||+|||||||
T Consensus 81 Qn------~~LId~qGNFGSrl~-Gd~aAA~RYiEaRLs~~a~~il~--~~~~v~~~~nyDg~~~EP~~lP~~iP~LLvN 151 (479)
T PRK09630 81 NK------GYLIDTQGNFGNPLT-GDPHAAARYIEARLSPLAKEVLF--NTDLMTFHDSYDGREKEPDILPAKLPLLLLH 151 (479)
T ss_pred cC------ceeeeCCCCCCCCCC-CCcchhHHHHHHhhHHHHHHHhc--CcCcccccccCCCcccCCcccCCcCCeeccc
Confidence 74 699999999999985 57999999999999999999533 34599999 9999999999999999999999
Q ss_pred CCcceeeeeecCCCCCCHHHHHHHHHHHHcCCCCCCCCccccCCCcEEEE-cccCCCceEEEEEEEEEEEeCceEEEEec
Q 000459 859 GSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEK-TASKEAGVTYTVTGIIEEVNETTLRIKEL 937 (1484)
Q Consensus 859 Ga~GIatG~sT~IP~hNp~eVi~~i~~~L~~~~~~p~~P~~~Gf~G~I~~-~~~~g~G~~~~~~G~~e~~~~~~i~ITEL 937 (1484)
||+||||||||+||||||.|||+|++++|+|+++.++.||+.| |.|.. .|.+|+| +|++||+++.+++++|+||||
T Consensus 152 Ga~GIAvG~AT~IpPHNl~Evida~i~~L~~~~~~~~PDFptG--G~I~~~~Y~tG~G-~~~vrgk~~~~~~~~ivItEI 228 (479)
T PRK09630 152 GVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTLLPDFPSG--GTMDASEYQDGLG-SITLRASIDIINDKTLLIKEI 228 (479)
T ss_pred CCceeeeccccCCCCCCHHHHHHHHHHHhCCCCCcCCcCCCCC--cEEEEeecccCCc-eEEEEEEEEEecCCEEEEEeC
Confidence 9999999999999999999999999999999999998889989 88853 4667888 999999999988889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCccc
Q 000459 938 PIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIK 1017 (1484)
Q Consensus 938 P~~~~t~~y~e~i~~l~~~~~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ 1017 (1484)
||++||++|+++|+++++.+.-.|++|+|+|++ +|+|+|+|+++.+++.+++.||++|.||++|++|++++.| |+ |
T Consensus 229 Py~~~t~~lie~I~~l~~~gki~I~~i~D~s~~-~v~i~I~Lk~~~~~~~vl~~Ly~~T~lq~s~~~n~~~i~~--~~-P 304 (479)
T PRK09630 229 CPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD-LPHIEIKLPKGIYAKDLLRPLFTHTECQVILTSRPTAIYQ--NK-P 304 (479)
T ss_pred CCcccHHHHHHHHHHHHhcCCCccceeeccCCC-CceEEEEECCCCCHHHHHHHHHhhCchhhhccceEEEEEC--Cc-c
Confidence 999999999999999998553348999999997 6999999999999999999999999999999986666665 45 7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheeccee-----EecccchHHHHHHHHHcCCCCC
Q 000459 1018 KYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEI-----VVNNRKRTDLLLELRQKGFTPF 1092 (1484)
Q Consensus 1018 ky~s~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI-----~v~nkkk~elv~eL~~~gF~~~ 1092 (1484)
++.++.+||+.++++...+++++.+.++.+|+++++..+-.-.||.+-|-..+ .+++.+.++-|......|+.||
T Consensus 305 ~~~~l~~il~~~~~~~~~~l~~eLe~~~~~l~~~~~~~sle~ifie~riy~~~~~~~~~~e~~~~~~~~~~~i~~~l~p~ 384 (479)
T PRK09630 305 VETSISEILRLHTETLQGYLKKELLILEDSLSREHYHKTLEYIFIKHKLYDTVREMLSKRKTSPSSSDLHNAVLEALTPF 384 (479)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999988765544 2555666677777778899988
Q ss_pred CCCCccHHHHhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHH
Q 000459 1093 PKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLR 1162 (1484)
Q Consensus 1093 ~~~sk~~~~a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~ 1162 (1484)
...-.. .++.++...|++++|.+++...++|-++++..+++++++.+
T Consensus 385 ~~~~~r-----------------------~v~~~d~~~l~~i~i~ri~~fd~~k~~~~~~~~~~~~~~~~ 431 (479)
T PRK09630 385 LDTLPT-----------------------PVDKQATAQLASLTIKKILCFNENSYTKELACIEKKQAAVQ 431 (479)
T ss_pred hhhccC-----------------------CCCHHHHHHHhhhhHHHhhhcCHHhHHHHHHHHHHHHHHHH
Confidence 432111 26788999999999999999999999999999999987754
No 29
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. DNA gyrase is more effective at relaxing supercoils than decatentating DNA. DNA gyrase in addition inserts negative supercoils in the presence of ATP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleava
Probab=100.00 E-value=2.5e-48 Score=379.86 Aligned_cols=114 Identities=36% Similarity=0.600 Sum_probs=111.1
Q ss_pred cEEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEE
Q 000459 446 CTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLM 525 (1484)
Q Consensus 446 ~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkii 525 (1484)
|||||||||||||||+||| ||+||||||||||||||++++.+++++|+||++|++||||+++.+| ++++|||||||
T Consensus 1 ~eL~lvEGDSAggsak~gR---dr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~~~~~-~~~~lrY~kii 76 (114)
T cd03366 1 SELYIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVEKARLDKILKNEEIRALITALGTGIGEDF-DLEKLRYHKII 76 (114)
T ss_pred CEEEEEeCCCCcccccccc---CcCceEEeccCCccchHhhccHHHHhcChHHHHHHHHhCCCCCCCC-ChhhCCcCeEE
Confidence 8999999999999999999 9999999999999999999999999999999999999999999775 89999999999
Q ss_pred EeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeec
Q 000459 526 IMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFIT 592 (1484)
Q Consensus 526 ImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~t 592 (1484)
|||| ||+||+||++|||||||+|||+||+. ||||+++|
T Consensus 77 imtD----------------------------aD~DG~hI~~Llltff~~~~p~Li~~-G~vyia~p 114 (114)
T cd03366 77 IMTD----------------------------ADVDGAHIRTLLLTFFFRYMRPLIEN-GHVYIAQP 114 (114)
T ss_pred EEeC----------------------------CCCCchHHHHHHHHHHHHHhHHHHhC-CeEEEecC
Confidence 9999 99999999999999999999999995 99999876
No 30
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=100.00 E-value=8.9e-48 Score=378.13 Aligned_cols=115 Identities=53% Similarity=0.799 Sum_probs=112.6
Q ss_pred cEEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEE
Q 000459 446 CTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLM 525 (1484)
Q Consensus 446 ~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkii 525 (1484)
|||||||||||||||+||| ||++|||||||||||||++++.+++++|+||++|++||||+++.+++++++|||||||
T Consensus 1 ~eL~lvEGDSA~gsak~gR---~~~~qailPLrGKiLNv~ka~~~k~~~n~Ei~~l~~alG~~~~~~~~~~~~lrY~kii 77 (115)
T cd01030 1 CELILVEGDSAGGSAKQGR---DRVFQAVFPLRGKILNVEKASLKKILKNEEIQNIIKALGLGIGKDDFDLDKLRYGKII 77 (115)
T ss_pred CEEEEEecCCcchhhhhhc---CcccEEEeccCCeeccHhcCCHHHHhcChHHHHHHHHhCCCCCcccCChhhcCcCeEE
Confidence 8999999999999999999 9999999999999999999999999999999999999999999778899999999999
Q ss_pred EeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeec
Q 000459 526 IMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFIT 592 (1484)
Q Consensus 526 ImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~t 592 (1484)
|||| ||+||+||++|||||||+|||+|++. ||||+|+|
T Consensus 78 imtD----------------------------aD~DG~hI~~Llltff~~~~p~Li~~-G~v~~~~~ 115 (115)
T cd01030 78 IMTD----------------------------ADVDGSHIRTLLLTFFYRFWPSLLEN-GFLYIAQT 115 (115)
T ss_pred EEeC----------------------------CCCCccHhHHHHHHHHHHHhhHhhhC-CEEEEeeC
Confidence 9999 99999999999999999999999996 99999986
No 31
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofact
Probab=100.00 E-value=2.1e-47 Score=377.54 Aligned_cols=119 Identities=84% Similarity=1.311 Sum_probs=115.2
Q ss_pred cEEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcHhHHHHHHHhCCCCCC-ccCcccccccccE
Q 000459 446 CTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGV-EYNNVKSLRYGHL 524 (1484)
Q Consensus 446 ~eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~-~~~~~~~LRYgki 524 (1484)
|||||||||||||||+|||+++||++|||||||||||||++++.++|++|+||++|++||||+++. +++++++||||||
T Consensus 1 ~eLflvEGDSA~gsak~gr~~~dr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~~~~~~~~~~~lrY~ki 80 (120)
T cd03365 1 CTLILTEGDSAKALAVAGLSVVGRDYYGVFPLRGKLLNVREASHKQIMENAEIQNIKKILGLQHGKSDYESTKSLRYGRL 80 (120)
T ss_pred CEEEEEeCCCchhhHHhhhccCCCceEEEeccCCccchhhcCCHHHHhcCHHHHHHHHHhCCCCCcccccccccCCcCeE
Confidence 899999999999999999999999999999999999999999999999999999999999999997 5679999999999
Q ss_pred EEeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeec
Q 000459 525 MIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFIT 592 (1484)
Q Consensus 525 iImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~t 592 (1484)
||||| ||+||+||++|||||||+|||+||+.+|||..|.|
T Consensus 81 iimtD----------------------------aD~DG~hI~~Llltff~r~~p~Li~~~~fi~~~~t 120 (120)
T cd03365 81 MIMTD----------------------------QDHDGSHIKGLLINFIHSFWPSLLKIPGFLVEFIT 120 (120)
T ss_pred EEEeC----------------------------CCCCccHHHHHHHHHHHHHhHHHhcCCCHHHHhcC
Confidence 99999 99999999999999999999999998899988765
No 32
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA. S. cerevisiae Topo IIA is a homodimer encoded by a single gene. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. This transducer domain is homologous to t
Probab=99.97 E-value=2.3e-31 Score=278.59 Aligned_cols=143 Identities=67% Similarity=1.043 Sum_probs=131.0
Q ss_pred ccHHHHHhhcCCC--------CcceeeeecceEEEEEEecCCceeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhc
Q 000459 265 KSFAEYVDMYPKS--------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKK 336 (1484)
Q Consensus 265 kgf~dYv~~~~~~--------~~~i~~~~~~~~EVAl~~s~~~~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk 336 (1484)
++|++|+.+|... .|++++..+.+|||||+|+++.++++||||+|+|.+||||++||+++|+++|++|++++
T Consensus 1 ~~f~~Y~~ly~~~~~~~~~~~~~~~~~~~~~~veva~~~s~~~~~~~SFvN~I~T~~GGTHv~g~~~~lt~~i~~~~~kk 80 (153)
T cd03481 1 KSFKDYVKLYLKDANKEDGPPPPVVYEPVNDRWEVAVALSDGQFQQVSFVNSIATTKGGTHVDYVADQIVKKLDEVVKKK 80 (153)
T ss_pred CCHHHHHHHHhcccccccCCCCCeEeccCCCcEEEEEEEcCCCcEEEEEECCcCCCCCCchHHHHHHHHHHHHHHHHHHc
Confidence 4799999999753 25677777899999999998778999999999999999999999999999999999876
Q ss_pred cCC-CCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHHhhHHHHHHHHHHhh
Q 000459 337 NKN-ANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWAN 408 (1484)
Q Consensus 337 ~K~-~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~~~~~Ive~il~~a~ 408 (1484)
+|. ..++++|||+||++||+|+|+||+|+||||++|+|++..|++++.+++.|++++ .++.|+++++.+|+
T Consensus 81 ~k~~~~i~~~dire~l~~vvs~~i~~P~FegQTK~kL~s~~~~~~~~~~~~~~~~~~~-~k~~ii~~i~~~a~ 152 (153)
T cd03481 81 NKGGINVKPFQVKNHLWIFVNCLIENPSFDSQTKETLTTKPKSFGSKCELSEKFLKKA-VKSGIVESVLSWAK 152 (153)
T ss_pred CCCCCCcCHHHHhcCeEEEEEEecCCCccCCcccccccCcccccccccccCHHHHHHH-HHchHHHHHHHHHc
Confidence 543 589999999999999999999999999999999999999999999999999999 67799999998875
No 33
>PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the second domain found in subunit B (gyrB and parE) of bacterial gyrase and topoisomerase IV, and the equivalent N-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LPS_A 3LNU_A 1KIJ_B 1EI1_B 1S16_B 1QZR_B 1PVG_A 3CWV_B 1ZXN_A 1ZXM_B ....
Probab=99.95 E-value=2.7e-28 Score=261.98 Aligned_cols=146 Identities=29% Similarity=0.378 Sum_probs=116.1
Q ss_pred cHHHHHhhcCCC-----C-cceeeee---c--ceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHHHHHH
Q 000459 266 SFAEYVDMYPKS-----V-TRFHERV---N--ERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHVMAVV 333 (1484)
Q Consensus 266 gf~dYv~~~~~~-----~-~~i~~~~---~--~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~ 333 (1484)
||.||++++..+ . ++.+... + ..++||++|++++ .+++||||+|+|++||||++||+++|+++|++|+
T Consensus 1 G~~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~va~~~~~~~~~~~~SfvN~i~T~~GGtHv~g~~~~i~~~i~~~~ 80 (173)
T PF00204_consen 1 GFKDYVKLLNKDKEPLHPEPIYFEGEDKENDRWEVEVAFQWTSGYDEKIVSFVNNIPTPEGGTHVDGFKDAITKAINDYA 80 (173)
T ss_dssp SHHHHHHHHCTTS-BSSSSEEEEEEEEE-TTTEEEEEEEEEBSSSSCEEEEEETTEE-TTEBHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCcCCCCCeEEEEEeccCCcEEEEEEEEecCCCceeeeeeeccccccccccHHHHHHHHHHHHHHHhH
Confidence 799999999876 1 2223322 2 4567889998644 5889999999999999999999999999999999
Q ss_pred HhccC---CCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhHHhhHHHHHHHHHHhhhc
Q 000459 334 NKKNK---NANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK 410 (1484)
Q Consensus 334 ~kk~K---~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~~~~~~Ive~il~~a~~r 410 (1484)
+++++ +..++++||++||++||||+|+||+|+||||++|+|+++...+...+++.|.+++..++.+++.|++++..+
T Consensus 81 ~k~~~~k~~~~i~~~di~~~l~~vv~~~i~nP~F~gQTK~~L~~~~~~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~ 160 (173)
T PF00204_consen 81 KKKNKLKKKDKITPEDIREGLTAVVSVKIPNPQFEGQTKEKLTNPEVRSIVEKAVSEKLEKWLEKNPEIAKAIIEKALQA 160 (173)
T ss_dssp HHTTCCCTTTGSSHHHHHTTEEEEEEEEESSG-BSSTTTTSB--HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHH
T ss_pred hhhCccccccccchhhcccccEEEEEEEEecccccccccceeeHHHhhhhhhhhhHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 88653 348999999999999999999999999999999999999977777788899999865567777766665443
Q ss_pred h
Q 000459 411 Q 411 (1484)
Q Consensus 411 ~ 411 (1484)
+
T Consensus 161 ~ 161 (173)
T PF00204_consen 161 A 161 (173)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are heterodimers composed of two subunits. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. E.coli DNA gyrase is a
Probab=99.94 E-value=2.3e-26 Score=246.38 Aligned_cols=149 Identities=19% Similarity=0.280 Sum_probs=120.2
Q ss_pred cHHHHHhhcCCC------Ccceeee--ecceEEEEEEecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhc
Q 000459 266 SFAEYVDMYPKS------VTRFHER--VNERWEICVTLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKK 336 (1484)
Q Consensus 266 gf~dYv~~~~~~------~~~i~~~--~~~~~EVAl~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk 336 (1484)
|+.+||+..... .+++++. .+..|||||+|++++ .+++||||+|+|.+||||++||+++|+++|+.|++++
T Consensus 2 Gl~~fl~~l~~~~~~l~~~~i~~~~~~~~~~veva~~~~~~~~~~~~sfvN~i~T~~GGTH~~g~~~~l~~~i~~~~~~~ 81 (172)
T cd00822 2 GLKDFVEELNKDKEPLHEEPIYIEGEKDGVEVEVALQWTDSYSENILSFVNNIPTPEGGTHETGFRAALTRAINDYAKKN 81 (172)
T ss_pred CHHHHHHHHhCCCCcCCCCCeEEEEEecceEEEEEEEEeCCCCeEEEEeECcccCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 778888766533 1233332 357899999999876 6789999999999999999999999999999999874
Q ss_pred c----CCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhH----HhhHHHHHHHHHHhh
Q 000459 337 N----KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKV----TAKSGIVETLLSWAN 408 (1484)
Q Consensus 337 ~----K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~----~~~~~Ive~il~~a~ 408 (1484)
+ ++.+++++||++||++||+|+++||+|+||||++|+|+++...+...+.+.|..++ ..+..|+++++..++
T Consensus 82 ~~~k~~~~~~~~~di~~~l~~vvsv~~~~P~F~gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n~~~a~~i~~k~~~~~~ 161 (172)
T cd00822 82 NLLKKKDVKLTGDDIREGLTAVISVKVPEPQFEGQTKDKLGNSEVRSIVESAVREALEEWLEENPEEAKKILEKAILAAK 161 (172)
T ss_pred CcccccCCCCCHHHHHhCcEEEEEEEcCCCccCCcccccccCHhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 3 23589999999999999999999999999999999999987666555555555444 455678888888888
Q ss_pred hchHHH
Q 000459 409 FKQSKD 414 (1484)
Q Consensus 409 ~r~~~~ 414 (1484)
+|.+++
T Consensus 162 aR~aa~ 167 (172)
T cd00822 162 AREAAR 167 (172)
T ss_pred HHHHHH
Confidence 887543
No 35
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.61 E-value=5.3e-15 Score=187.32 Aligned_cols=248 Identities=16% Similarity=0.155 Sum_probs=164.4
Q ss_pred ccchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCC--
Q 000459 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDD-- 151 (1484)
Q Consensus 76 vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd-- 151 (1484)
+..+..+|.|+|+||+|. | ++.|.|+|+.+ | +|+|.|||+|||.+..+ ++|+ .|+++|+..
T Consensus 20 I~~~~svvkElveNsiDA----g-at~I~v~i~~~-g~~~i~V~DnG~Gi~~~~~~--------~~~~-~~~tsKi~~~~ 84 (617)
T PRK00095 20 VERPASVVKELVENALDA----G-ATRIDIEIEEG-GLKLIRVRDNGCGISKEDLA--------LALA-RHATSKIASLD 84 (617)
T ss_pred ccCHHHHHHHHHHHHHhC----C-CCEEEEEEEeC-CeEEEEEEEcCCCCCHHHHH--------HHhh-ccCCCCCCChh
Confidence 456789999999999993 4 69999999754 6 89999999999998532 3444 789999976
Q ss_pred Cccc-cccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEe------cCccc
Q 000459 152 NVKK-TTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFK------PDLAK 224 (1484)
Q Consensus 152 ~~yk-~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~------PD~~i 224 (1484)
+-|. .|.|.+|.|++.++++| +++|+++....+..|.+.|++|..... .++ ...+||+|+|+ |+..+
T Consensus 85 dl~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~----~~~-~~~~GT~V~v~~LF~n~P~Rrk 158 (617)
T PRK00095 85 DLEAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEV----KPA-AHPVGTTIEVRDLFFNTPARRK 158 (617)
T ss_pred HhhccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcce----ecc-cCCCCCEEEechhhccCcHHHH
Confidence 3444 68999999999999998 688888732236789999998743221 111 23689999997 99999
Q ss_pred cc-cCccCHHHHHHHHHHHHHhhcccCCceEEEeCCcccC------cccHHHHHhhcCCC---Ccce-eeeecceEEEE-
Q 000459 225 FN-MTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVP------VKSFAEYVDMYPKS---VTRF-HERVNERWEIC- 292 (1484)
Q Consensus 225 F~-~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnder~~------~kgf~dYv~~~~~~---~~~i-~~~~~~~~EVA- 292 (1484)
|- ..... +..|..+++.+|. +||+|.+.|.+.... ..++.+++...... ...+ +......+.|-
T Consensus 159 flk~~~~e---~~~i~~~v~~~Al-~~p~i~f~l~~~~~~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~~~~~i~g 234 (617)
T PRK00095 159 FLKSEKTE---LGHIDDVVNRLAL-AHPDVAFTLTHNGKLVLQTRGAGQLLQRLAAILGREFAENALPIDAEHGDLRLSG 234 (617)
T ss_pred hccCcHHH---HHHHHHHHHHHhh-cCCCcEEEEEECCEEEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccCCCEEEEE
Confidence 84 22222 3357799999998 889999988765321 23577777665432 1111 22222223332
Q ss_pred -E---EecCCc-eeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhccCCCCCChhhHhcceEEEEEEeecCCccC
Q 000459 293 -V---TLSEGQ-FQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFD 365 (1484)
Q Consensus 293 -l---~~s~~~-~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk~K~~~i~~~dIregL~~vVsvki~nP~Fe 365 (1484)
+ .++... ..++.|||+.++.. ..+..+|.++...++.+ ...-.+|+++.++.-.+|
T Consensus 235 ~is~p~~~~~~~~~~~~fvN~R~v~~-----~~l~~ai~~~y~~~~~~------------~~~P~~~l~i~~~~~~~D 295 (617)
T PRK00095 235 YVGLPTLSRANRDYQYLFVNGRYVRD-----KLLNHAIRQAYHDLLPR------------GRYPAFVLFLELDPHQVD 295 (617)
T ss_pred EEeCcccccCCCcceEEEECCcEecC-----HHHHHHHHHHHHHhccC------------CCCcEEEEEEEeChHhcc
Confidence 2 222222 35789999999852 33444444433333211 112267888887654444
No 36
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.40 E-value=1.1e-12 Score=159.87 Aligned_cols=165 Identities=19% Similarity=0.261 Sum_probs=120.2
Q ss_pred ccchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC-C--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCC
Q 000459 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH-D--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDN 152 (1484)
Q Consensus 76 vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~-g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~ 152 (1484)
..+|++++.|+|+||+|.....+....|.|.+...+ + .|+|.|||.|||.+..+. +|+.+|+|+||...
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~--------iF~rf~~tsK~~~~ 97 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPK--------VFGKMLAGSKFHRI 97 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHh--------hhhhccccCccccc
Confidence 358999999999999998765555668999887532 2 799999999999987643 89999999999753
Q ss_pred ccccccCccCcccceeeecccE-----EEEEEEecCCCeEE--EEEEec----CCCCCCCCccccCCCCCcceEEEEecC
Q 000459 153 VKKTTGGRNGYGAKLTNIFSTE-----FIIETADGKRLKKY--KQVFTN----NMGKKSEPNISKCKEGDNWTKVSFKPD 221 (1484)
Q Consensus 153 ~yk~sGGlhGvGasvvNAlS~~-----f~Vev~d~rdGk~y--~q~f~~----g~~~~~~~~i~~~~~~~~GT~I~F~PD 221 (1484)
..+.|.+|+|+++++++|+. ++|++. ++|..| .++|.- |.+.......... ...+||+|+++++
T Consensus 98 --~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~--~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~-~~~~GT~V~v~f~ 172 (488)
T TIGR01052 98 --IQSRGQQGIGISGAVLYSQMTTGKPVKVISS--TGGEIYVYKMKLKIDVQKNEGEIVEKGEWNK-PGWRGTRIELEFK 172 (488)
T ss_pred --cccCCCccEehhHHHHHHHHcCCceEEEEEe--cCCceEEEEEEEEecccccCCeecceeecCC-CCCCceEEEEEEC
Confidence 57788999999999999986 788776 556655 677741 2222211111111 1247999999966
Q ss_pred ccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCc
Q 000459 222 LAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGH 260 (1484)
Q Consensus 222 ~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnde 260 (1484)
.... .+.. ..+..+++.+|. +||+++|.|.+.
T Consensus 173 ~~~~---r~~k---~~i~e~l~~~Al-~nP~~~i~l~~~ 204 (488)
T TIGR01052 173 GVSY---RRSK---QGVYEYLRRTAV-ANPHAKIVLVDP 204 (488)
T ss_pred Ccee---eccH---HHHHHHHHHHHh-hCCCeEEEEEeC
Confidence 5431 1222 235688999997 889999999754
No 37
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry.; InterPro: IPR002288 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the C-terminal region (C-terminal part of domain 2) of subunit B found in topoisomerase II (gyrB) and topoisomerase IV (parE), which are primarily of bacterial origin. It does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. This region is involved in subunit interaction, which accounts for the difference between subunit B and single polypeptide topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LTN_D 3RAF_C 3FOF_C 3RAE_C 3KSA_D 3RAD_C 3FOE_D 3KSB_D 3K9F_D 2XCT_D ....
Probab=99.35 E-value=7.9e-13 Score=118.46 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=47.1
Q ss_pred CccceEEecCCCCCChhhHHHHhhccCccccceEEcCchhHHHHHHHhhh---hhhHHHHHhhh
Q 000459 625 SSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK---KKIEARKKWLL 685 (1484)
Q Consensus 625 ~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~~~~RK~wi~ 685 (1484)
++++|+||||||||+|+|||||+|||+.+ .+++|..+|.+.++..|+. +++++||+||.
T Consensus 4 ~~~~I~RfKGLGEM~p~qL~eTTmdP~~R--~L~~V~i~d~~~~~~~~~~LMG~~v~~Rr~fIe 65 (65)
T PF00986_consen 4 KKVEIQRFKGLGEMNPDQLWETTMDPETR--RLIRVTIEDAEEADELFEMLMGKNVEPRREFIE 65 (65)
T ss_dssp TTTEEEESSSGGGS-HHHHHHHHTSTTTT--EEEEEEHCCHHHHHHHHHHHHSSTHHHHHHHHH
T ss_pred CCceeEEecccccCCHHHHHHHccCccce--EEEEEEECCHHHHHHHHHHHcCCCcHHHHHHhC
Confidence 67999999999999999999999999887 5666666665555555543 48999999995
No 38
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.35 E-value=4.2e-11 Score=147.53 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=131.8
Q ss_pred hhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEEE
Q 000459 29 EMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVID 108 (1484)
Q Consensus 29 ~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~ 108 (1484)
++++.++--|--++++.|---+.. ..+|++++.|+|+||+|.....+....|.|.+.
T Consensus 10 ~~~~~~s~aEfF~kn~~~~gf~~p-----------------------~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~ 66 (535)
T PRK04184 10 EKFREISVAEFFEKNKELLGFDNP-----------------------ARALYTTVKELVDNSLDACEEAGILPDIKIEIK 66 (535)
T ss_pred hhhhhCCHHHHHHhCccceeecCC-----------------------HHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEE
Confidence 447777888888888877522211 357999999999999998765455567888887
Q ss_pred cc---C--CEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccE-----EEEE
Q 000459 109 QE---H--DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTE-----FIIE 178 (1484)
Q Consensus 109 ~d---~--gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~-----f~Ve 178 (1484)
.. + ..|+|.|||.|||-+..+ .+|+.++++++|... ..+.|.+|+|+++++.+|+. +.|+
T Consensus 67 ~~~~~~~~~~I~V~DNG~GIp~e~l~--------~iF~~f~~~SK~~~~--~~s~G~~GLGLsiv~~isq~~~G~~I~V~ 136 (535)
T PRK04184 67 RVDEGKDHYRVTVEDNGPGIPPEEIP--------KVFGKLLYGSKFHNL--RQSRGQQGIGISAAVLYAQMTTGKPVRVI 136 (535)
T ss_pred EccCCCcEEEEEEEcCCCCCCHHHHH--------HHhhhhhcccccccc--ccCCCCCCcchHHHHHHHHHhcCCcEEEE
Confidence 42 2 359999999999988654 388999999998653 35678899999999999985 5666
Q ss_pred EEecCCCe-EEEEEEe----cCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCce
Q 000459 179 TADGKRLK-KYKQVFT----NNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSV 253 (1484)
Q Consensus 179 v~d~rdGk-~y~q~f~----~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~gl 253 (1484)
+.. ..|. .|..++. .|.+......... ....+||+|++.++...+.. ...+..+++.+|. .||++
T Consensus 137 S~~-~~g~~~~~~~l~id~~kn~g~i~~~~~~~-~~~~~GT~V~V~l~~~~~~~-------~~~I~e~i~r~Al-~nP~~ 206 (535)
T PRK04184 137 SST-GGSKKAYYFELKIDTKKNEPIILEREEVD-WDRWHGTRVELEIEGDWYRA-------KQRIYEYLKRTAI-VNPHA 206 (535)
T ss_pred Eec-CCCceEEEEEEEecccccCCeeccccccC-CCCCCCEEEEEEECCcChhh-------HHHHHHHHHHHHH-hCCCe
Confidence 652 2333 6777774 1222221111111 13468999999987766521 2346688888897 88999
Q ss_pred EEEeC
Q 000459 254 KVELN 258 (1484)
Q Consensus 254 kI~ln 258 (1484)
.|.|.
T Consensus 207 ~~~l~ 211 (535)
T PRK04184 207 RITFK 211 (535)
T ss_pred EEEEE
Confidence 99987
No 39
>PLN03237 DNA topoisomerase 2; Provisional
Probab=99.33 E-value=1.9e-11 Score=161.43 Aligned_cols=145 Identities=18% Similarity=0.102 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccH-HHH
Q 000459 1024 QILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSI-EAV 1102 (1484)
Q Consensus 1024 eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~-~~a 1102 (1484)
++=.+||.+|.++..+|.+++|.+++++++++...+.--..|-+.+-.. =...+.++....|+......... ..+
T Consensus 1013 ~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~----l~~~L~~~gf~~~~~~~~~~~~~~~~~ 1088 (1465)
T PLN03237 1013 HLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKAD----LVEELRQKGFTPFPKKAKSVEAAVAGA 1088 (1465)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHH----HHHHHHHcCCCccchhhcccccccccc
Confidence 3335799999999999999999999999999998765444332222111 11235555554454332211110 011
Q ss_pred hhcCCccccc----ccc-Cc---------ccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchh
Q 000459 1103 VAGATDETEE----SEE-NP---------EVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPES 1168 (1484)
Q Consensus 1103 ~~~~~e~~e~----~ee-~~---------e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~d 1168 (1484)
.....++.++ ... .. ..-..||.+.++.|+. +++++++|++.|++.-..-.|....+
T Consensus 1089 ~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~---------~~~~k~~el~~l~~~t~~~lW~~DLd 1159 (1465)
T PLN03237 1089 TDDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCA---------DRDKLNIEVEDLKKTTPKSLWLKDLD 1159 (1465)
T ss_pred cccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111110 100 01 1123389999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000459 1169 LWVKDLDALDMQL 1181 (1484)
Q Consensus 1169 LW~~DLd~f~~~l 1181 (1484)
-+.+.|+.++.+-
T Consensus 1160 ~f~~~~~~~~~~~ 1172 (1465)
T PLN03237 1160 ALEKELDKLDKED 1172 (1465)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 40
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.27 E-value=7.8e-12 Score=146.41 Aligned_cols=192 Identities=19% Similarity=0.278 Sum_probs=138.4
Q ss_pred hhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEEE
Q 000459 29 EMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVID 108 (1484)
Q Consensus 29 ~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~ 108 (1484)
+.++.++--|--+|++.|- |=.++ ..+|+..|.|+++||+|.+..+|....|+|.|.
T Consensus 10 e~~re~SvAEFF~kNk~ml-Gf~~p----------------------~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~ 66 (538)
T COG1389 10 EKFRELSVAEFFRKNKEML-GFDGP----------------------IRSLTTTVHELVTNSLDACEEAGILPDIKVEIE 66 (538)
T ss_pred hhhhhcCHHHHHHhCHHhc-CCCCc----------------------hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE
Confidence 4578888889999988883 43332 468999999999999999998999999999998
Q ss_pred cc---CCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEEE-----EEEE
Q 000459 109 QE---HDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFI-----IETA 180 (1484)
Q Consensus 109 ~d---~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~-----Vev~ 180 (1484)
.. --.|.|.|||.|||....|+ |||++++|+||+ ..++|-|+.|+|+|.+-.+|+.-+ |.+.
T Consensus 67 ~~~~d~y~v~veDNGpGIP~e~IPk--------vFGk~LygSKfh--~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~ 136 (538)
T COG1389 67 RIGKDHYKVIVEDNGPGIPEEQIPK--------VFGKMLYGSKFH--RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISS 136 (538)
T ss_pred ecCCceEEEEEecCCCCCChhHhHH--------HHHHHhccchhh--hhhhccccccccHHHHHHHHHhcCCCceEEEec
Confidence 64 12689999999999887665 999999999997 457999999999999999998654 4443
Q ss_pred ecCCCeEEEEEEecCCCCCCCCccccC-----CCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEE
Q 000459 181 DGKRLKKYKQVFTNNMGKKSEPNISKC-----KEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKV 255 (1484)
Q Consensus 181 d~rdGk~y~q~f~~g~~~~~~~~i~~~-----~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI 255 (1484)
...++..|...-.-+ .....|.|... ..+.+||+|...-.-......... +...++..|. .||--+|
T Consensus 137 T~~s~~~~~~~l~id-~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~~~~~~~qg------i~eYlkrtai-inPhA~I 208 (538)
T COG1389 137 TGDSGTAYEYELKID-VQKNEPEIVERGEVENPGGWHGTRVELELKGVWYRAKRQG------IYEYLKRTAI-INPHARI 208 (538)
T ss_pred CCCCcceEEEEEEec-CCCCcchhhhcccccCCCCCCceEEEEEecccchhhcccC------HHHHHHHHhh-cCCceEE
Confidence 333345555544322 23334444321 234689999876444333222221 2355666676 7899999
Q ss_pred EeCCcc
Q 000459 256 ELNGHR 261 (1484)
Q Consensus 256 ~lnder 261 (1484)
.|.|--
T Consensus 209 ~l~dPd 214 (538)
T COG1389 209 VLKDPD 214 (538)
T ss_pred EEECCC
Confidence 998643
No 41
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.05 E-value=5.8e-10 Score=139.80 Aligned_cols=189 Identities=20% Similarity=0.220 Sum_probs=129.3
Q ss_pred hhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEEE
Q 000459 29 EMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVID 108 (1484)
Q Consensus 29 ~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~ 108 (1484)
+..+..+--|--+|+..|+ |-.+. ..+|++++.|+|+||+|.....+....|.|.+.
T Consensus 10 ~~~~~~S~aEFF~kNk~~l-Gf~~~----------------------~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~ 66 (659)
T PRK14867 10 DEFKEHSISEFFRKNKHML-GYSGK----------------------LRSMTTIIHELVTNSLDACEEAEILPDIKVEIE 66 (659)
T ss_pred HHHHHhHHHHHHhhCCeee-echhH----------------------HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEE
Confidence 4456667777788888874 22111 357899999999999998765455568999987
Q ss_pred ccC-C--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccEE-----EEEEE
Q 000459 109 QEH-D--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEF-----IIETA 180 (1484)
Q Consensus 109 ~d~-g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f-----~Vev~ 180 (1484)
..+ + .|+|.|||+|||-+..+ .+|+.+|+|+||.. +..+.|.+|.|++++.++|+.. .+++.
T Consensus 67 ~~g~~~~~I~V~DNG~GIp~e~l~--------~iFerF~atSK~~~--~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~ 136 (659)
T PRK14867 67 KLGSDHYKVAVEDNGPGIPPEFVP--------KVFGKMLAGSKMHR--LIQSRGQQGIGAAGVLLFSQITTGKPLKITTS 136 (659)
T ss_pred ECCCcEEEEEEEeeCeeCCHHHHh--------hhhccccccCcccc--eeccCCCCcccHHHHHHHHHHhcCCcEEEEEE
Confidence 542 2 39999999999988654 38999999999964 4678889999999999999874 56554
Q ss_pred ecCCCeEEEEEEec----CCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceEEE
Q 000459 181 DGKRLKKYKQVFTN----NMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVE 256 (1484)
Q Consensus 181 d~rdGk~y~q~f~~----g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~ 256 (1484)
..+|..|.+.+.- +.+...... .. ....+||+|+|. |...-|+..... +...++.+|. .||++.|.
T Consensus 137 -~g~G~~f~i~L~i~i~~n~G~I~~~~-~~-~~~~~GT~Ie~~-----V~dLFynR~E~~-i~e~l~r~AL-anP~i~f~ 206 (659)
T PRK14867 137 -TGDGKIHEMEIKMSVEKNEGDIVSHK-VR-EGFWRGTRVEGE-----FKEVTYNRREQG-PFEYLRRISL-STPHAKIT 206 (659)
T ss_pred -cCCCEEEEEEEEEEecccCCeecccc-cC-CCCCCCcEEEEE-----EeeceechhhHH-HHHHHHHHHH-hCCCcEEE
Confidence 3567777676643 222221111 11 123689999951 111112221122 4688888897 78999999
Q ss_pred eCCc
Q 000459 257 LNGH 260 (1484)
Q Consensus 257 lnde 260 (1484)
|.+.
T Consensus 207 l~~~ 210 (659)
T PRK14867 207 LKDP 210 (659)
T ss_pred EEeC
Confidence 8754
No 42
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=3.9e-09 Score=124.23 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=113.3
Q ss_pred ccchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC-EEEEEECCcccccccccCCCcccceEEeeeccccccCCC---
Q 000459 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD-LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDD--- 151 (1484)
Q Consensus 76 vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g-sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd--- 151 (1484)
+..+..++.|+|+||+|.. ++.|.|.+..++. .|+|.|||.|||.+..+ .+| ..+..+|+..
T Consensus 20 i~~~~~~l~eLi~Na~dA~-----a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~-~~~~tsk~~~~~~ 85 (312)
T TIGR00585 20 IERPASVVKELVENSLDAG-----ATRIDVEIEEGGLKLIEVSDNGSGIDKEDLP--------LAC-ERHATSKIQSFED 85 (312)
T ss_pred hhhHHHHHHHHHHHHHHCC-----CCEEEEEEEeCCEEEEEEEecCCCCCHHHHH--------HHh-hCCCcCCCCChhH
Confidence 3567889999999999942 3789999876432 59999999999987532 233 3455666653
Q ss_pred CccccccCccCcccceeeecccEEEEEEEe-cCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEe------cCccc
Q 000459 152 NVKKTTGGRNGYGAKLTNIFSTEFIIETAD-GKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFK------PDLAK 224 (1484)
Q Consensus 152 ~~yk~sGGlhGvGasvvNAlS~~f~Vev~d-~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~------PD~~i 224 (1484)
.....+-|.+|.|++..+.+| +++|+++. ..++..|++. .+|..... ..+ ....+||+|++. |+...
T Consensus 86 ~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~-~~g~~~~~---~~~-~~~~~GTtV~v~~lf~n~p~r~~ 159 (312)
T TIGR00585 86 LERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQAL-LEGGMIEE---IKP-APRPVGTTVEVRDLFYNLPVRRK 159 (312)
T ss_pred hhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEE-ECCCcCcc---ccc-ccCCCccEEEEchhhccCchhhh
Confidence 244578899999999999999 79999874 3556667666 44421111 111 124689999999 99887
Q ss_pred cccCccCHHHHHHHHHHHHHhhcccCCceEEEeCCc
Q 000459 225 FNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGH 260 (1484)
Q Consensus 225 F~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~lnde 260 (1484)
|-. ....+ +..++..+..+|. .+|+|++.|...
T Consensus 160 ~~~-~~~~~-~~~i~~~l~~~al-~~p~i~f~l~~~ 192 (312)
T TIGR00585 160 FLK-SPKKE-FRKILDLLNRYAL-IHPDVSFSLTHD 192 (312)
T ss_pred hcc-CcHHH-HHHHHHHHHHHhh-cCCCeEEEEEEC
Confidence 652 23322 3457788998887 779988877653
No 43
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=98.71 E-value=1.9e-08 Score=99.01 Aligned_cols=91 Identities=26% Similarity=0.405 Sum_probs=81.9
Q ss_pred EEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhh-hhhcHhHHHHHHHhCCCCCCccCcccccccccEE
Q 000459 447 TLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQ-VLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLM 525 (1484)
Q Consensus 447 eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~-i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkii 525 (1484)
+||||||+|+.....+++ +...+.|+|+.|.++|....+... ..++..|+.|.+.+ .+|+.||
T Consensus 1 ~liIvE~ps~a~~i~~~l---~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~~ii 64 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKAL---GGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLL-------------KKADEII 64 (100)
T ss_dssp EEEEESSHHHHHHHHHHS---STTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHH-------------HSCSEEE
T ss_pred CEEEEeCHHHHHHHHHHc---CCCCEEEEEeCCcccccccccccccccccccchhhHHHh-------------hhccEee
Confidence 799999999999998888 677899999999999999877655 78888999999887 4689999
Q ss_pred EeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHhhhhhhh
Q 000459 526 IMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLL 581 (1484)
Q Consensus 526 ImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li 581 (1484)
|+|| +|.+|.||...+++++..++|.++
T Consensus 65 iatD----------------------------~D~EGe~Ia~~i~~~~~~~~~~~~ 92 (100)
T PF01751_consen 65 IATD----------------------------PDREGELIAWEIIELLGKNNPKLI 92 (100)
T ss_dssp EEC-----------------------------SSHHHHHHHHHHHHHHHHHSHHHT
T ss_pred ecCC----------------------------CChHHHHHHHHHHHHHhHhCCCcC
Confidence 9999 999999999999999999999993
No 44
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.48 E-value=4.9e-07 Score=114.14 Aligned_cols=186 Identities=18% Similarity=0.236 Sum_probs=122.5
Q ss_pred hhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEEE
Q 000459 29 EMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVID 108 (1484)
Q Consensus 29 ~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~ 108 (1484)
+..+.++--|-..++..|.--+.+ ...|..++.|+|+||+|....++....|.|.+.
T Consensus 20 ~~~~~iS~aEfF~kN~~~lgfD~d-----------------------~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie 76 (795)
T PRK14868 20 ESQREISIAEFFEKNKHMLGFDSG-----------------------ARGLVTAVKEAVDNALDATEEAGILPDIYVEIE 76 (795)
T ss_pred hhccccceeeecccCcceeeccCC-----------------------HHHHHHHHHHHHHHHHHhCcccCCCceEEEEEE
Confidence 345556666666666655533322 236889999999999998754333347888887
Q ss_pred ccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCccCcccceeeecccE-----EEEEEEe
Q 000459 109 QEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTE-----FIIETAD 181 (1484)
Q Consensus 109 ~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~-----f~Vev~d 181 (1484)
..++ .|+|.|||.|||-+..+ .+|..++.++||.... .+-|..|.|++++=++|.. +.|++..
T Consensus 77 ~~g~~v~I~VeDNG~GIp~EdLp--------~IFerf~~tSKf~~~~--~srG~rG~GLglai~~sqlt~GgpI~I~S~~ 146 (795)
T PRK14868 77 EVGDYYRLVVEDNGPGITKEQIP--------KVFGKLLYGSRFHARE--QSRGQQGIGISAAVLYSQLTSGKPAKITSRT 146 (795)
T ss_pred ECCCEEEEEEEEcCCCCCHHHHH--------HHhhhhcccccccccc--cCCCCCceehHHHHHHHHHcCCCcEEEEeCC
Confidence 6544 59999999999987543 4899999899987532 4557789999999999985 6777752
Q ss_pred cCCCeE--EEEEEecCCCCCCCCcc-----ccCCCCCcceEEEEecCccccccCccCHHHHHHHHHHHHHhhcccCCceE
Q 000459 182 GKRLKK--YKQVFTNNMGKKSEPNI-----SKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVK 254 (1484)
Q Consensus 182 ~rdGk~--y~q~f~~g~~~~~~~~i-----~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glk 254 (1484)
+..+.- |......|. ..|.+ ... ...+||+|+-. +|.+. ... . -+...++.+|. .||.+.
T Consensus 147 ~~~~~g~~~~L~Id~gk---Nep~I~~~~~~~~-~~~~GT~IeV~----Lf~N~--pAR-~-kI~eyl~r~Al-~nP~a~ 213 (795)
T PRK14868 147 QGSEEAQYFELIIDTDT---NEPEISVEETTTW-DRPHGTRIELE----MEANM--RAR-Q-QLHDYIKHTAV-VNPHAR 213 (795)
T ss_pred CCCCceeEEEEEEecCC---Cccceecceeccc-CCCCceEEEEE----EEccC--chh-h-hHHHHHHHHHh-hCCCeE
Confidence 211222 344443321 12221 122 34689999986 56542 111 1 25578888886 779999
Q ss_pred EEeCCc
Q 000459 255 VELNGH 260 (1484)
Q Consensus 255 I~lnde 260 (1484)
|.|...
T Consensus 214 f~l~~~ 219 (795)
T PRK14868 214 IELREP 219 (795)
T ss_pred EEEEEC
Confidence 998765
No 45
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.39 E-value=1.3e-07 Score=93.74 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=66.6
Q ss_pred cchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC--CEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcc
Q 000459 77 PGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH--DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVK 154 (1484)
Q Consensus 77 pGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~--gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~y 154 (1484)
..|+++++|+|+||+|..... ..|.|.+..++ -.|+|+|||.|||.+.. +.+|..+.++.+ +.
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~---~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l--------~~~~~~~~~~~~---~~- 68 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEG---GKIDITIEEDDDHLSIEISDNGVGIPPEEL--------EKLFEPFFTSDK---SE- 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---SEEEEEEEEETTEEEEEEEESSSSTTHHHH--------HHHCSTTSHSSS---SS-
T ss_pred HHHHHHHHHHHHHHHHHhcCC---CEEEEEEEEecCeEEEEEEecccccccccc--------ccchhhcccccc---cc-
Confidence 468999999999999998754 68888888753 37999999999998643 335665655555 22
Q ss_pred ccccCccCcccceeeecccEEEEEE
Q 000459 155 KTTGGRNGYGAKLTNIFSTEFIIET 179 (1484)
Q Consensus 155 k~sGGlhGvGasvvNAlS~~f~Vev 179 (1484)
...+.||+|+.+++.+++.+..++
T Consensus 69 -~~~~g~GlGL~~~~~~~~~~~g~l 92 (111)
T PF02518_consen 69 -TSISGHGLGLYIVKQIAERHGGEL 92 (111)
T ss_dssp -GGSSSSSHHHHHHHHHHHHTTEEE
T ss_pred -cccCCCChHHHHHHHHHHHCCCEE
Confidence 223339999999999999887665
No 46
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.21 E-value=7.2e-07 Score=92.91 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=67.5
Q ss_pred HhHHHHHHHHhhhhcccCCCCCeEEEEEEccC---CEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 80 YKIFDEILVNAADNKQRDPKMDAVKVVIDQEH---DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 80 ~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~---gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
..++.|+|+||+|... +.|.|.|+.++ ..|.|.|||.|||.+.... +..+..+++.... -+.
T Consensus 4 ~~al~ElI~Ns~DA~a-----~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~---------~~~~g~s~k~~~~-~~~ 68 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA-----TNIKISIDEDKKGERYIVIEDNGEGMSREDLES---------FFRIGRSSKKSEK-DRQ 68 (137)
T ss_dssp THHHHHHHHHHHHHHH-----HHEEEEEEEETTTTTEEEEEESSS---HHHHHH---------HTTCHHTHHHHHH-HGG
T ss_pred HHHHHHHHHHHHHccC-----CEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH---------hccccCCCCCchh-hhh
Confidence 5789999999999754 67999998763 6999999999999874321 3356666654221 245
Q ss_pred ccCccCcccc-eeeecccEEEEEEEecCCCeEEEEEEe
Q 000459 157 TGGRNGYGAK-LTNIFSTEFIIETADGKRLKKYKQVFT 193 (1484)
Q Consensus 157 sGGlhGvGas-vvNAlS~~f~Vev~d~rdGk~y~q~f~ 193 (1484)
+-|.+|+|++ .+..++..++|.+........+...+.
T Consensus 69 ~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 69 SIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred cCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 7899999944 567889999999873322334444443
No 47
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=97.85 E-value=2.6e-05 Score=76.53 Aligned_cols=73 Identities=26% Similarity=0.310 Sum_probs=62.5
Q ss_pred ceEEEEEEecCC----ceeEEEEecccccCCCcchhHhHHHHHHHHHHHHHHhccCCCCCChhhHhcceEEEEEEeecC-
Q 000459 287 ERWEICVTLSEG----QFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDN- 361 (1484)
Q Consensus 287 ~~~EVAl~~s~~----~~~~~SFVN~I~T~~GGTHv~gf~~aLt~~i~~~~~kk~K~~~i~~~dIregL~~vVsvki~n- 361 (1484)
..+++++++.+. ...+++|||++++..||+|..++.+++.+.++ ++++....++||++.++.
T Consensus 27 ~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~-------------~~~~~~~p~~vl~i~~~~~ 93 (107)
T cd00329 27 FRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALN-------------GDDVRRYPVAVLSLKIPPS 93 (107)
T ss_pred EEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhc-------------ccCCCCCCEEEEEEEeChH
Confidence 467778888764 24689999999998899999999999988775 456778889999999999
Q ss_pred -CccC-Ccccccc
Q 000459 362 -PAFD-SQTKETL 372 (1484)
Q Consensus 362 -P~Fe-gQTKekL 372 (1484)
|.|. +|||+.+
T Consensus 94 ~~d~nv~p~K~~v 106 (107)
T cd00329 94 LVDVNVHPTKEEV 106 (107)
T ss_pred HeeeCCCCCcccc
Confidence 9999 9999976
No 48
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=97.74 E-value=2e-06 Score=108.06 Aligned_cols=146 Identities=9% Similarity=-0.120 Sum_probs=121.4
Q ss_pred ccccCccccCCCCccceehhhhhcCCCCC---CceeEEeeccccccccCC-CCcccHHHHHHHhhcccccCCcccccccC
Q 000459 719 QRSIPSMVDGLKPGQRKILFCSFKRNFIK---EAKVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPN 794 (1484)
Q Consensus 719 ~RaIP~~~DGLKP~QRkIL~~~~~~~l~~---~~Kva~l~G~V~~~~~YH-HGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~ 794 (1484)
.|..|...++++|..+.+|+++.+-+... ..+++..++.+.. .+| |+..-.++..++|||.+.=.| |+...+
T Consensus 99 v~~H~~ek~yvpelifg~Lltssny~d~ekK~tggrngygakLcn--iFs~~f~~Et~d~~~~~~~kQ~w~~--nm~~~~ 174 (842)
T KOG0355|consen 99 VTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCN--IFSTEFTVETADREYKMAFKQTWIN--NMTRDE 174 (842)
T ss_pred eeecccccccchHHHHhhhhhccccCCCccccccCCCccceeeee--eccccceeeeeehHhHHHHHHhhhc--CCcccC
Confidence 67888999999999999999998776432 2344444444433 589 999999999999998875445 578999
Q ss_pred CCCcCCCCCCCCccccccccccccHHHhh-hCCCCCcCccccc-CCCCCccCccccCCCCceeeecCCcceeeeeecCCC
Q 000459 795 GQFGTRNQGGKDAASARYIFTRLSPITRF-LFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIP 872 (1484)
Q Consensus 795 GnFGsr~~gG~d~Aa~RYi~~rls~~~~~-lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP 872 (1484)
++|++...+++ ||.++++|-... .+.+.|++++++. +++-..-+|. .+..+|..+-|++.++.++|++.+|
T Consensus 175 ~~~i~~~~~~~------yTkitF~PDl~~F~m~eLD~Div~l~~rr~~d~a~~~-~~vkv~ln~~~~~~~~f~~yv~~~~ 247 (842)
T KOG0355|consen 175 EPKIVPSTDED------YTKITFSPDLEKFKMKELDDDIVALMARRAYDLAGSV-KSVKVELNGKNIPVKGFYDYVKMYL 247 (842)
T ss_pred CceeecCCCCC------cceEEeCcChHhcCchhhcchHHHhHHhhhhhhcccc-cceeeeecCCCCccchHHHHHhhcc
Confidence 99999976533 999999987774 6778999999998 8888898998 8899999999999999999999999
Q ss_pred CCCH
Q 000459 873 NYNP 876 (1484)
Q Consensus 873 ~hNp 876 (1484)
+ |+
T Consensus 248 ~-~~ 250 (842)
T KOG0355|consen 248 E-VL 250 (842)
T ss_pred c-cc
Confidence 9 65
No 49
>PRK05218 heat shock protein 90; Provisional
Probab=97.71 E-value=0.00012 Score=93.60 Aligned_cols=129 Identities=15% Similarity=0.200 Sum_probs=80.1
Q ss_pred hHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccc
Q 000459 81 KIFDEILVNAADNKQR-------------DPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSS 147 (1484)
Q Consensus 81 ki~dEIL~Na~De~~~-------------~~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGg 147 (1484)
..+.|+|.||.|.... +..-..|.|.++.++..|+|.|||.||.-+.-.. .|++.-++|
T Consensus 29 v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~eel~~--------~l~~ia~Sg 100 (613)
T PRK05218 29 IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREEVIE--------NLGTIAKSG 100 (613)
T ss_pred HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHHHHH--------HHHhhcccc
Confidence 4699999999998531 1223578888887777899999999999764221 233332332
Q ss_pred ------cCCC--CccccccCccCcccceeeecccEEEEEEEecCCC---eEEEEEEecCCCCCCCCccccCCCCCcceEE
Q 000459 148 ------NYDD--NVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRL---KKYKQVFTNNMGKKSEPNISKCKEGDNWTKV 216 (1484)
Q Consensus 148 ------kfdd--~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdG---k~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I 216 (1484)
+..+ ..-.-.-|.+|+|.-.+=+++.+++|++. +.| .-|......| +. -.+.++.....||+|
T Consensus 101 ~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr--~~~~~~~~~~w~~~g~-~~---~~i~~~~~~~~GT~I 174 (613)
T PRK05218 101 TKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITR--SAGPAAEAVRWESDGE-GE---YTIEEIEKEERGTEI 174 (613)
T ss_pred chhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEc--CCCCCCceEEEEEeCC-ce---eEEeECCCCCCCcEE
Confidence 2211 11234579999999888778889999885 333 2344443322 11 122233223689999
Q ss_pred EEecCcc
Q 000459 217 SFKPDLA 223 (1484)
Q Consensus 217 ~F~PD~~ 223 (1484)
+.....+
T Consensus 175 ~l~Lk~~ 181 (613)
T PRK05218 175 TLHLKED 181 (613)
T ss_pred EEEECcc
Confidence 8865443
No 50
>PRK14083 HSP90 family protein; Provisional
Probab=97.66 E-value=0.0001 Score=93.79 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=85.2
Q ss_pred HhHHHHHHHHhhhhcccCC-----CCCeEEEEE-EccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCC-
Q 000459 80 YKIFDEILVNAADNKQRDP-----KMDAVKVVI-DQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDN- 152 (1484)
Q Consensus 80 ~ki~dEIL~Na~De~~~~~-----~~~~I~V~i-~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~- 152 (1484)
...+.|+|.||.|....-. .-..|.|++ +.+.+.++|.|||.||+.+.-.. .|+.+-++++-+..
T Consensus 25 ~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~--------~l~~ig~S~k~~~~~ 96 (601)
T PRK14083 25 RVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHE--------FLATIGRSSKRDENL 96 (601)
T ss_pred HHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHH--------HHhhhccchhhhhhh
Confidence 3679999999999865311 123788888 66678999999999999775321 45556566664421
Q ss_pred --ccccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCcccc--CCCCCcceEEEEecC
Q 000459 153 --VKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISK--CKEGDNWTKVSFKPD 221 (1484)
Q Consensus 153 --~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~--~~~~~~GT~I~F~PD 221 (1484)
.-....|..|||...+=+++.+++|.+....++. ...|+.. +... -.+.. .....+||+|+....
T Consensus 97 ~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~--~~~W~~~-~~g~-y~i~~~~~~~~~~GT~I~L~l~ 165 (601)
T PRK14083 97 GFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGP--AVEWRGK-ADGT-YSVRKLETERAEPGTTVYLRPR 165 (601)
T ss_pred cccccccccccccceEEEEEecCEEEEEeccCCCCc--eEEEEEC-CCCc-eEEEeCCCCCCCCCCEEEEEec
Confidence 1123469999999999999999999986222233 3455431 1111 12221 223468999988763
No 51
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.34 E-value=0.00018 Score=93.11 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=66.7
Q ss_pred cCCeEEEEcChhhHHHHHHHhCCCCCccceEEecCCCCCChhhHHHHhhccCccccceEEcCchhHHHHHHHhhh---hh
Q 000459 600 KNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSK---KK 676 (1484)
Q Consensus 600 kg~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~ 676 (1484)
+|.+...+++..|+-+|..+.+. ++..|+||||||+|+|+++|+++||+..+...-+. .++...++..|+. +.
T Consensus 661 ~~~~~~~~~~~~ell~~v~~~gr--~g~~Iqr~KgLgEM~~eqL~eTtmdp~~R~l~~v~--led~~~a~~~f~~lMg~~ 736 (756)
T PRK14939 661 RGERKQPVSSFEEALDWLLAEAR--KGLSIQRYKGLGEMNPEQLWETTMDPENRRLLQVT--IEDAIAADEIFTTLMGDE 736 (756)
T ss_pred cCCcceecCCHHHHHHHHHhhhc--cCccccccccHHHhHHHHHHHHhhChhheeeeeee--hhhHHHHHHHHHHHhcCC
Confidence 35445778999999999888765 67889999999999999999999999887544444 4454444555544 45
Q ss_pred hHHHHHhhhccCC
Q 000459 677 IEARKKWLLQFEP 689 (1484)
Q Consensus 677 ~~~RK~wi~~~~~ 689 (1484)
+++|++||..+..
T Consensus 737 ve~rr~fI~~~a~ 749 (756)
T PRK14939 737 VEPRREFIEENAL 749 (756)
T ss_pred cchhHHHHHHhhh
Confidence 8999999998763
No 52
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=96.86 E-value=0.0024 Score=82.46 Aligned_cols=128 Identities=15% Similarity=0.207 Sum_probs=76.2
Q ss_pred HHHHHHHHhhhhccc-------C----CCCC--eEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeecccccc
Q 000459 82 IFDEILVNAADNKQR-------D----PKMD--AVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSN 148 (1484)
Q Consensus 82 i~dEIL~Na~De~~~-------~----~~~~--~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgk 148 (1484)
-+.|+|.||.|.+.. + +... .|.|..+.+...++|.|||.||+-+.-. +-+.+..++|.+
T Consensus 29 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~-------~~LgtIa~SGt~ 101 (701)
T PTZ00272 29 FLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLV-------NNLGTIARSGTK 101 (701)
T ss_pred hHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHH-------HHhhhhhhcchH
Confidence 378999999998631 1 1112 4555565666799999999999965321 112233344444
Q ss_pred -CC----CCccccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEec-CCCCCCCCccccCC--CCCcceEEEEec
Q 000459 149 -YD----DNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTN-NMGKKSEPNISKCK--EGDNWTKVSFKP 220 (1484)
Q Consensus 149 -fd----d~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~-g~~~~~~~~i~~~~--~~~~GT~I~F~P 220 (1484)
|- ...-....|..|||.-.+=.++...+|++... ... ...|+. |.+. -.+.... ....||+|+..+
T Consensus 102 ~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~-~~~--~~~W~s~~~g~---y~i~~~~~~~~~~GT~I~L~L 175 (701)
T PTZ00272 102 AFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNN-SDE--SYVWESSAGGT---FTITSTPESDMKRGTRITLHL 175 (701)
T ss_pred HHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecC-CCc--eEEEEECCCCc---EEEEeCCCCCCCCCCEEEEEE
Confidence 21 11113477999999999999999999988622 222 334432 2111 1222221 235899987776
Q ss_pred Cc
Q 000459 221 DL 222 (1484)
Q Consensus 221 D~ 222 (1484)
..
T Consensus 176 k~ 177 (701)
T PTZ00272 176 KE 177 (701)
T ss_pred CC
Confidence 44
No 53
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.86 E-value=0.013 Score=80.23 Aligned_cols=149 Identities=12% Similarity=0.107 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCC--CCCc-cHH
Q 000459 1024 QILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFP--KNSK-SIE 1100 (1484)
Q Consensus 1024 eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~--~~sk-~~~ 1100 (1484)
+.=.++|..|.++.....+..+..|+.+++++...+.--..|.+.. ...=...+.++....|+... +... ...
T Consensus 987 ~~Rl~~y~kR~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~----k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~ 1062 (1388)
T PTZ00108 987 LVRLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGELVITNAK----KKDLVKELKKLGYVRFKDIIKKKSEKITAE 1062 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCC----HHHHHHHHHHcCCCccchhhhhcccccccc
Confidence 4445788899999988888899988888887765443322222211 11212335666555565421 1111 111
Q ss_pred HHhh--cCCccccccccCc-cc--c---------cCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCc
Q 000459 1101 AVVA--GATDETEESEENP-EV--V---------NGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATP 1166 (1484)
Q Consensus 1101 ~a~~--~~~e~~e~~ee~~-e~--~---------~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~ 1166 (1484)
+... ...++.+++.++. .. . ..||.+.++.|+. +++++++|++.|+..-..-.|.+.
T Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~---------e~~~~~~e~~~L~~~t~~~lw~~D 1133 (1388)
T PTZ00108 1063 EEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNA---------ELEKKEKELEKLKNTTPKDMWLED 1133 (1388)
T ss_pred cccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111 1111111111111 11 1 3389999999999 999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 000459 1167 ESLWVKDLDALDMQLDELD 1185 (1484)
Q Consensus 1167 ~dLW~~DLd~f~~~l~~~~ 1185 (1484)
.+-+.+.|++++++..+..
T Consensus 1134 L~~~~~~~~~~~~~~~~~~ 1152 (1388)
T PTZ00108 1134 LDKFEEALEEQEEVEEKEI 1152 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999987754333
No 54
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.85 E-value=0.0015 Score=62.39 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=58.4
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-|.+++.|+++|+++.... ...|.|.+..+++ .|.|.|+|+|++....+. +|..++.+.. ..
T Consensus 5 ~l~~~~~~l~~n~~~~~~~---~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~--------~~~~~~~~~~-----~~ 68 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPE---GGRITVTLERDGDHLEITVEDNGPGIPPEDLEK--------IFEPFFRTDG-----RS 68 (111)
T ss_pred HHHHHHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH--------HhcCeEECCC-----CC
Confidence 4778999999999987653 2567777766544 588999999998653321 2333322221 23
Q ss_pred cccCccCcccceeeecccEEEEE
Q 000459 156 TTGGRNGYGAKLTNIFSTEFIIE 178 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~f~Ve 178 (1484)
...+.+|+|+++++.++..+..+
T Consensus 69 ~~~~~~g~gl~~~~~~~~~~~g~ 91 (111)
T smart00387 69 RKIGGTGLGLSIVKKLVELHGGE 91 (111)
T ss_pred CCCCcccccHHHHHHHHHHcCCE
Confidence 44567999999999999887544
No 55
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.80 E-value=0.0018 Score=60.90 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=55.2
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++.|+|.||++.... ....|.|.+..+++ .|.|.|+|.|+|....+. .+..+ .....+.
T Consensus 1 l~~~~~~ll~Na~~~~~~--~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~--------~~~~~------~~~~~~~ 64 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE--GGGRITISVERDGDHLEIRVEDNGPGIPEEDLER--------IFERF------SDGSRSR 64 (103)
T ss_pred CHHHHHHHHHHHHHhCcC--CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHH--------Hhhhh------hcCCCCC
Confidence 467899999999987653 13567887776543 588899999998765432 11111 1113345
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
..+.+|+|+++++.+...
T Consensus 65 ~~~~~g~gl~~~~~~~~~ 82 (103)
T cd00075 65 KGGGTGLGLSIVKKLVEL 82 (103)
T ss_pred CCCccccCHHHHHHHHHH
Confidence 567899999999999983
No 56
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0038 Score=78.55 Aligned_cols=129 Identities=13% Similarity=0.247 Sum_probs=80.4
Q ss_pred HHHHHHHHhhhhccc-------CC------CCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeecccccc
Q 000459 82 IFDEILVNAADNKQR-------DP------KMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSN 148 (1484)
Q Consensus 82 i~dEIL~Na~De~~~-------~~------~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgk 148 (1484)
-+.|+|.||.|.+.. ++ .-..|.|..+.++++++|.|||-|+.-+... +.+-|.-.+|++
T Consensus 31 FLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~-------~~LgTIAkSgT~ 103 (623)
T COG0326 31 FLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVI-------ENLGTIAKSGTK 103 (623)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHH-------HHHHHhhhccHH
Confidence 378999999997631 21 1256888888888999999999999865321 111122222221
Q ss_pred -C----CCCc-cccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEe-cCCCCCCCCccccCCCCC-cceEEEEec
Q 000459 149 -Y----DDNV-KKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFT-NNMGKKSEPNISKCKEGD-NWTKVSFKP 220 (1484)
Q Consensus 149 -f----dd~~-yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~-~g~~~~~~~~i~~~~~~~-~GT~I~F~P 220 (1484)
| ..+. -.--.|+-|||.--+=+.+.+.+|.+.....+..| .|+ +|.+. -.|..+.... .||+|+..+
T Consensus 104 ~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~--~W~S~g~g~---ytv~~~~~~~~~GT~I~L~L 178 (623)
T COG0326 104 EFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAY--HWESDGEGE---YTVEDIDKEPRRGTEITLHL 178 (623)
T ss_pred HHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcce--EEEEcCCCc---eEEeeccCCCCCCcEEEEEE
Confidence 1 0010 12347999999998888899888888633334555 675 33332 2334444455 499998775
Q ss_pred Cc
Q 000459 221 DL 222 (1484)
Q Consensus 221 D~ 222 (1484)
-+
T Consensus 179 k~ 180 (623)
T COG0326 179 KE 180 (623)
T ss_pred CC
Confidence 44
No 57
>PTZ00130 heat shock protein 90; Provisional
Probab=96.34 E-value=0.008 Score=78.18 Aligned_cols=128 Identities=19% Similarity=0.257 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhcc--c-----C------CCCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccc-c
Q 000459 83 FDEILVNAADNKQ--R-----D------PKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSS-N 148 (1484)
Q Consensus 83 ~dEIL~Na~De~~--~-----~------~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGg-k 148 (1484)
+.|+|.||.|... | + ..--.|.|..+.+.++++|.|||-|+.-+... +-+.|..++|+ .
T Consensus 93 LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~-------~nLgTIA~Sgt~~ 165 (814)
T PTZ00130 93 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLI-------NNLGTIAKSGTSN 165 (814)
T ss_pred eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHH-------HHhhhhcccccHH
Confidence 5799999999863 1 1 11235677776667899999999999876421 11222233332 2
Q ss_pred C----CC-CccccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccC---CCCCcceEEEEec
Q 000459 149 Y----DD-NVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKC---KEGDNWTKVSFKP 220 (1484)
Q Consensus 149 f----dd-~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~---~~~~~GT~I~F~P 220 (1484)
| .. ..-..-.|+.|||.--+=+++...+|++... +..-| .|+.. +... -.|... ....+||+|+.++
T Consensus 166 F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~-~~~~~--~W~s~-g~g~-y~I~e~~~~~~~~rGT~I~LhL 240 (814)
T PTZ00130 166 FLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNN-NDEQY--IWEST-ADAK-FTIYKDPRGSTLKRGTRISLHL 240 (814)
T ss_pred HHHHhhccCCCcccccccccchhheeeecCEEEEEEcCC-CCceE--EEEEC-CCCc-EEEEECCCCCCCCCCcEEEEEE
Confidence 2 11 1113468999999988888999999998632 22333 35431 1111 122222 1236899998876
Q ss_pred Cc
Q 000459 221 DL 222 (1484)
Q Consensus 221 D~ 222 (1484)
..
T Consensus 241 ke 242 (814)
T PTZ00130 241 KE 242 (814)
T ss_pred CC
Confidence 54
No 58
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.012 Score=75.98 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=97.6
Q ss_pred ccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC-CEEEEEECCcccccccccCCCcccceEEee
Q 000459 63 EESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH-DLISVHNSGDGVPVEIHQEEGVYVPELIFG 141 (1484)
Q Consensus 63 ~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~-gsIsV~DnGrGIPvd~h~~~~~~~~Elift 141 (1484)
...|+++.|+ .-.|.|+|+||+|. .++.|.|.+...+ +.|.|.|||.||+-+--+ +..
T Consensus 15 IAAGEVIerP-------aSVVKELVENSlDA-----GAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~---------la~ 73 (638)
T COG0323 15 IAAGEVIERP-------ASVVKELVENSLDA-----GATRIDIEVEGGGLKLIRVRDNGSGIDKEDLP---------LAL 73 (638)
T ss_pred hcccceeecH-------HHHHHHHHhccccc-----CCCEEEEEEccCCccEEEEEECCCCCCHHHHH---------HHH
Confidence 3456777765 46899999999995 2489999998643 259999999999977432 233
Q ss_pred eccccccCCCCc---cccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEE
Q 000459 142 HLLTSSNYDDNV---KKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSF 218 (1484)
Q Consensus 142 ~L~aGgkfdd~~---yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F 218 (1484)
.=||-||-.+.+ --.|-|--|=-++..-..| +++|+++ ..+...+.|.+-.|..... .+.++ ...-||+|.-
T Consensus 74 ~rHaTSKI~~~~DL~~I~TlGFRGEAL~SIasVs-rlti~Sr-t~~~~~~~~~~~~g~~~~~--~~~p~-a~~~GTtVeV 148 (638)
T COG0323 74 LRHATSKIASLEDLFRIRTLGFRGEALASIASVS-RLTITSR-TAEASEGTQIYAEGGGMEV--TVKPA-AHPVGTTVEV 148 (638)
T ss_pred hhhccccCCchhHHHHhhccCccHHHHHHHHhhh-eeEEEee-cCCcCceEEEEecCCcccc--cccCC-CCCCCCEEEe
Confidence 456666655432 2356677776666655555 5777776 2343455555555432221 12222 2345999975
Q ss_pred e------cCccccccCccCHHHHHHHHHHHHHhhcccCCceEEEeC
Q 000459 219 K------PDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELN 258 (1484)
Q Consensus 219 ~------PD~~iF~~~~~~~d~l~ll~~Rl~dlA~~Ln~glkI~ln 258 (1484)
. |=...|--.. . ..+..|..-+..+|- .+|.|.++|.
T Consensus 149 ~dLF~NtPaRrKflks~-~-~E~~~i~~vv~r~AL-ahp~I~F~l~ 191 (638)
T COG0323 149 RDLFYNTPARRKFLKSE-K-TEFGHITELINRYAL-AHPDISFSLS 191 (638)
T ss_pred hHhhccChHHHHhhccc-H-HHHHHHHHHHHHHHh-cCCCeEEEEE
Confidence 3 2222221111 1 112224455555564 5688887774
No 59
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=96.20 E-value=0.018 Score=58.55 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=62.1
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
+.-++.|++.||+.+.........|.|.+..+.+ .|+|+|+|.|+|....+.....-. .
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------------------~ 92 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWEP-------------------D 92 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccccC-------------------C
Confidence 4568999999999987643223567777655443 689999999988765433211100 3
Q ss_pred ccCccCcccceeeecccEEEEEEEecCCCeEEEEE
Q 000459 157 TGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQV 191 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~ 191 (1484)
.....|.|+.+++.|+..|.+ . ...|..-+++
T Consensus 93 ~~~~~G~Gl~li~~l~D~~~~-~--~~~gn~v~l~ 124 (125)
T PF13581_consen 93 SLREGGRGLFLIRSLMDEVDY-R--EDGGNTVTLR 124 (125)
T ss_pred CCCCCCcCHHHHHHHHcEEEE-E--CCCeEEEEEE
Confidence 345689999999999999988 2 2556555544
No 60
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.03 E-value=0.024 Score=58.58 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=52.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCCE--EEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDL--ISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~gs--IsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
.|..++.|++.||+.+.........|.|.+...++. |+|.|+|.|||... . +|..+.++.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~~~----~------~~~~~~~~~-------- 100 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIENLE----E------AREPLYTSK-------- 100 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcCchh----H------hhCCCcccC--------
Confidence 466789999999996543222245788887755444 88999999998311 1 222222111
Q ss_pred cccCccCcccceeeecccEEEEE
Q 000459 156 TTGGRNGYGAKLTNIFSTEFIIE 178 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~f~Ve 178 (1484)
-.++.+|+|+.+++-+...+.++
T Consensus 101 ~~~~~~GlGL~lv~~~~~~l~~~ 123 (137)
T TIGR01925 101 PELERSGMGFTVMENFMDDVSVD 123 (137)
T ss_pred CCCCCCcccHHHHHHhCCcEEEE
Confidence 12345899999998777654443
No 61
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.83 E-value=0.025 Score=60.69 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=60.7
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
.|.-++.|++.||+.+...+.....|.|++...++ .|.|.|+|.|+|....+. .|.....+.+-
T Consensus 42 ~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~--------~~~p~~~~~~~------ 107 (161)
T PRK04069 42 DMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKS--------KLGPYDISKPI------ 107 (161)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhcc--------ccCCCCCCCcc------
Confidence 46678999999999988654334567777765433 689999999998653221 11100001111
Q ss_pred cccCccCcccceeeecccEEEEEEEecCCCeEEEE
Q 000459 156 TTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQ 190 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q 190 (1484)
.....+|.|+.+++.|+..+.+.. .+|....+
T Consensus 108 ~~~~~~G~GL~li~~l~d~v~~~~---~~G~~v~~ 139 (161)
T PRK04069 108 EDLREGGLGLFLIETLMDDVTVYK---DSGVTVSM 139 (161)
T ss_pred cccCCCceeHHHHHHHHHhEEEEc---CCCcEEEE
Confidence 111236899999999999877663 35554433
No 62
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=95.74 E-value=0.015 Score=70.97 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=51.1
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++.++|+||+.... ....|.|.+..+++ .|+|.|||.|||-+.... +|-.++++.+=. ..
T Consensus 354 l~~~~~nll~Nai~~~~---~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~--------~~~~~~~~~~~~----~~ 418 (457)
T TIGR01386 354 FRRAISNLLSNALRHTP---DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSR--------LFDRFYRVDPAR----SN 418 (457)
T ss_pred HHHHHHHHHHHHHHcCC---CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH--------hccccccCCccc----CC
Confidence 55667777777776532 23678998887644 589999999999765332 444444332110 11
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
..+.+|+|++.|.-+-+.
T Consensus 419 ~~~g~GlGL~i~~~~~~~ 436 (457)
T TIGR01386 419 SGEGTGLGLAIVRSIMEA 436 (457)
T ss_pred CCCCccccHHHHHHHHHH
Confidence 234599999998866554
No 63
>PRK10604 sensor protein RstB; Provisional
Probab=95.61 E-value=0.027 Score=69.49 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=50.2
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++..+|.||+... ...|.|++..+++ .|+|.|||.|||-+.-+ -||.....+.+ +-..
T Consensus 320 l~~vl~NLl~NAik~~-----~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~--------~if~~f~r~~~----~~~~ 382 (433)
T PRK10604 320 MERVLDNLLNNALRYA-----HSRVRVSLLLDGNQACLIVEDDGPGIPPEERE--------RVFEPFVRLDP----SRDR 382 (433)
T ss_pred HHHHHHHHHHHHHHhC-----CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHh--------hcCCCCccCCC----CCCC
Confidence 5667788888887543 2567777665444 58999999999976432 25544433211 1112
Q ss_pred ccCccCcccceeeecccEE
Q 000459 157 TGGRNGYGAKLTNIFSTEF 175 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~f 175 (1484)
..|.+|+|+++|.-+.+++
T Consensus 383 ~~~g~GLGL~ivk~i~~~~ 401 (433)
T PRK10604 383 ATGGCGLGLAIVHSIALAM 401 (433)
T ss_pred CCCCccchHHHHHHHHHHC
Confidence 2345899999887666543
No 64
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=95.46 E-value=0.016 Score=74.49 Aligned_cols=77 Identities=22% Similarity=0.421 Sum_probs=59.1
Q ss_pred hHHHHHHHHhhhhccc-CCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccc
Q 000459 81 KIFDEILVNAADNKQR-DPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTT 157 (1484)
Q Consensus 81 ki~dEIL~Na~De~~~-~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~s 157 (1484)
.+|--+|-|=+||+.+ .|.++.|.|....+.. .++|+|+|+|||-+.- |.||-.+.+++|+++ +
T Consensus 774 ~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~--------~~IFD~F~r~~~~~~-----~ 840 (890)
T COG2205 774 PLIEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGEL--------ERIFDKFYRGNKESA-----T 840 (890)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHH--------HHhhhhhhcCCCCCC-----C
Confidence 4677777777777765 4667888888776544 5799999999998754 349999999999887 2
Q ss_pred cCccCcccceeeec
Q 000459 158 GGRNGYGAKLTNIF 171 (1484)
Q Consensus 158 GGlhGvGasvvNAl 171 (1484)
.| -|+|+++|-.+
T Consensus 841 ~G-~GLGLsIc~~i 853 (890)
T COG2205 841 RG-VGLGLAICRGI 853 (890)
T ss_pred CC-ccccHHHHHHH
Confidence 23 58899998876
No 65
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.45 E-value=0.03 Score=63.41 Aligned_cols=87 Identities=23% Similarity=0.381 Sum_probs=63.1
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC----EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD----LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNV 153 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g----sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~ 153 (1484)
.|--+|.|++.||+-.+--++....|.|++..+++ ..+|||||.|+|++...
T Consensus 122 ~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~~~------------------------ 177 (221)
T COG3920 122 PLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEAPL------------------------ 177 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCCCC------------------------
Confidence 67789999999999887643345778888876544 69999999999988421
Q ss_pred cccccCccCcccceeeecc-cEEE--EEEEecCCCeEEEEEEec
Q 000459 154 KKTTGGRNGYGAKLTNIFS-TEFI--IETADGKRLKKYKQVFTN 194 (1484)
Q Consensus 154 yk~sGGlhGvGasvvNAlS-~~f~--Vev~d~rdGk~y~q~f~~ 194 (1484)
..+|+|..+|+.+- +... ++.. ..+|-.|.+.|..
T Consensus 178 -----~~~g~G~~Lv~~lv~~q~~g~~~~~-~~~Gt~~~i~~~~ 215 (221)
T COG3920 178 -----SRGGFGLQLVERLVPEQLGGELEDE-RPDGTEFRLRFPL 215 (221)
T ss_pred -----CCCCcHHHHHHHHHHHHcCCeEEEE-cCCCEEEEEEEec
Confidence 24789999999888 3333 2222 2457777777754
No 66
>PRK03660 anti-sigma F factor; Provisional
Probab=95.27 E-value=0.081 Score=55.21 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=53.1
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-+..++.|++.||+.+.........|.|.+...++ .|+|.|+|.|||.... +|..++.+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~~~~----------~~~~~~~~~-------- 100 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIEDIEE----------AMQPLYTTK-------- 100 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCChHHH----------hhCCCcccC--------
Confidence 35568999999999775432222567777765544 4899999999984111 122222111
Q ss_pred cccCccCcccceeeecccEEEEEE
Q 000459 156 TTGGRNGYGAKLTNIFSTEFIIET 179 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~f~Vev 179 (1484)
...+.+|+|+.++..+...+.++.
T Consensus 101 ~~~~~~GlGL~i~~~~~~~i~~~~ 124 (146)
T PRK03660 101 PELERSGMGFTVMESFMDEVEVES 124 (146)
T ss_pred CCCCCccccHHHHHHhCCeEEEEe
Confidence 011347999999998888766554
No 67
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.15 E-value=0.12 Score=55.51 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=61.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
.+.-++.|++.||+-+....+....|.|.+..+++ .|+|.|+|.|++....+. .+........-+
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~--------~~~~~~~~~~~~----- 108 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQ--------SLGPYDGSEPID----- 108 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhcc--------ccCCCCCCCCcc-----
Confidence 35668999999999887654444677777765555 467999999998664321 111111000000
Q ss_pred cccCccCcccceeeecccEEEEEEEecCCCeEEEEE
Q 000459 156 TTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQV 191 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~ 191 (1484)
....+|.|+.++..|+..+.++- ..|....+.
T Consensus 109 -~~~~~G~GL~Li~~L~D~v~~~~---~~G~~l~l~ 140 (159)
T TIGR01924 109 -DLREGGLGLFLIETLMDEVEVYE---DSGVTVAMT 140 (159)
T ss_pred -cCCCCccCHHHHHHhccEEEEEe---CCCEEEEEE
Confidence 11235899999999999888764 455554444
No 68
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=95.04 E-value=0.034 Score=70.28 Aligned_cols=81 Identities=26% Similarity=0.424 Sum_probs=55.1
Q ss_pred chHhHHHHHHHHhhhhcccCCC-CCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcc
Q 000459 78 GLYKIFDEILVNAADNKQRDPK-MDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVK 154 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~-~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~y 154 (1484)
.|+.++.++|+||++.....+. ...|.|.+..+++ .|+|.|||.|||.+..+ -+|...++.. -
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~iF~~~~~tk------~ 497 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRD--------KIFEQGVSTR------A 497 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHH--------HHhCCCCCCC------C
Confidence 4788999999999998653222 3678888876654 48999999999977542 2454443311 0
Q ss_pred ccccCccCcccceeeeccc
Q 000459 155 KTTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 155 k~sGGlhGvGasvvNAlS~ 173 (1484)
+-. |.+|+|+++|.-+.+
T Consensus 498 ~~~-~g~GlGL~ivk~iv~ 515 (545)
T PRK15053 498 DEP-GEHGIGLYLIASYVT 515 (545)
T ss_pred CCC-CCceeCHHHHHHHHH
Confidence 111 348999999876654
No 69
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=94.69 E-value=0.04 Score=67.61 Aligned_cols=81 Identities=19% Similarity=0.389 Sum_probs=54.5
Q ss_pred hHhHHHHHHHHhhhhcccCC-CCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 79 LYKIFDEILVNAADNKQRDP-KMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~-~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
|..++..+|.||++.....+ ....|.|.+..+++ .++|.|||.|||-+.... +|..+.+...
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~--------iF~~f~~~~~------- 452 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYK--------VFEPFFTTKG------- 452 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH--------hcCCCcccCC-------
Confidence 78899999999998754322 12457777655444 589999999999886543 5555433211
Q ss_pred cccCccCcccceeeecccE
Q 000459 156 TTGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~ 174 (1484)
.+++..|+|+++|.-+-+.
T Consensus 453 ~~~~G~GlGL~i~~~iv~~ 471 (494)
T TIGR02938 453 GSRKHIGMGLSVAQEIVAD 471 (494)
T ss_pred CCCCCCcccHHHHHHHHHH
Confidence 0123489999998877654
No 70
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=94.39 E-value=0.066 Score=65.85 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=52.2
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-|..++..+|.||+..... ...|.|.+..+++ .|+|.|||.|||-+..+. +|....+..+ ...
T Consensus 317 ~l~~vl~NLl~NAik~~~~---~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~~----~~~ 381 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPE---GTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPR--------LTERFYRVDK----ARS 381 (430)
T ss_pred HHHHHHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHH--------hccCcccccC----CCC
Confidence 4778888999999876432 2567777665433 599999999999775432 4444433221 111
Q ss_pred cccCccCcccceeeeccc
Q 000459 156 TTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~ 173 (1484)
...|..|+|+++|.-+-+
T Consensus 382 ~~~~G~GLGL~ivk~iv~ 399 (430)
T PRK11006 382 RQTGGSGLGLAIVKHALS 399 (430)
T ss_pred CCCCCCchHHHHHHHHHH
Confidence 123457999999886654
No 71
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=94.36 E-value=0.065 Score=66.25 Aligned_cols=51 Identities=29% Similarity=0.488 Sum_probs=40.5
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVY 134 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~ 134 (1484)
+..|+.|.|.|++-++.+ +.|+|+++...| .++|.|||.|||-..+| +|.|
T Consensus 482 lLqIvREAlsNa~KHa~A----s~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e~-~gHy 534 (574)
T COG3850 482 LLQIVREALSNAIKHAQA----SEIKVTVSQNDGQVTLTVEDNGVGIDEAAEP-SGHY 534 (574)
T ss_pred HHHHHHHHHHHHHHhccc----CeEEEEEEecCCeEEEEEeeCCcCCCCccCC-CCCc
Confidence 457999999999988764 899999886544 68999999999988544 3344
No 72
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=94.33 E-value=0.055 Score=67.93 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=53.4
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-|..++.++|+||++.... +....|.|++..+++ .|+|.|||.|||-+..+. +|... |.
T Consensus 433 ~l~~vl~nLl~NAi~~~~~-~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~--------iF~~~----------~~ 493 (542)
T PRK11086 433 ELITILGNLIENALEAVGG-EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDA--------IFDKG----------YS 493 (542)
T ss_pred HHHHHHHHHHHHHHHHhhc-CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHH--------HHhCC----------Cc
Confidence 4778999999999987532 234678888886655 488999999999764321 34322 12
Q ss_pred cccCccCcccceeeeccc
Q 000459 156 TTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~ 173 (1484)
..++.+|+|+++|.-+-+
T Consensus 494 ~~~~g~GlGL~iv~~iv~ 511 (542)
T PRK11086 494 TKGSNRGVGLYLVKQSVE 511 (542)
T ss_pred cCCCCCcCcHHHHHHHHH
Confidence 224558999999876644
No 73
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=93.74 E-value=0.061 Score=66.30 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=51.7
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|.+++..+|.||+..... ...|.|.+..+++ .|+|.|||.|||-+.-+ -+|..++.+.+ ... .
T Consensus 353 l~qvl~nll~NAi~~~~~---~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~--------~lf~~~~~~~~---~~~-~ 417 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDS---GGSLHISAEQRDKTLRLTFADSAPGVSDEQLQ--------KLFERFYRTEG---SRN-R 417 (466)
T ss_pred HHHHHHHHHHHHHHhCCC---CCEEEEEEEEcCCEEEEEEEecCCCcCHHHHH--------HhccCcccCCC---CcC-C
Confidence 567788888888866432 3578888876655 47889999999965322 24444443321 111 2
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
..|.+|+|+++|.-+.+.
T Consensus 418 ~~~g~GlGL~iv~~i~~~ 435 (466)
T PRK10549 418 ASGGSGLGLAICLNIVEA 435 (466)
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 334579999988766554
No 74
>PRK10364 sensor protein ZraS; Provisional
Probab=93.70 E-value=0.059 Score=66.76 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=51.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-|..++..+|+||++... ....|.|.+..+++ .|+|.|||.|||.+..+ -+|...++
T Consensus 348 ~l~~il~NLl~NA~k~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~~~~---------- 406 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIG---QHGVISVTASESGAGVKISVTDSGKGIAADQLE--------AIFTPYFT---------- 406 (457)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHH--------HHhCcccc----------
Confidence 366788888888887643 23578888776544 58999999999976432 13433321
Q ss_pred cccCccCcccceeeecccE
Q 000459 156 TTGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~ 174 (1484)
..++.+|+|+++|.-+-+.
T Consensus 407 ~k~~g~GlGL~iv~~~v~~ 425 (457)
T PRK10364 407 TKAEGTGLGLAVVHNIVEQ 425 (457)
T ss_pred CCCCCCcccHHHHHHHHHH
Confidence 1234489999998877654
No 75
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=93.63 E-value=0.096 Score=66.33 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=80.6
Q ss_pred ccchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccc---cCC
Q 000459 76 VPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSS---NYD 150 (1484)
Q Consensus 76 vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGg---kfd 150 (1484)
+.+|...|.|+|+||+|.- ++.|.|.+.. .| +|+|.|||-||...--+. ++.-|+-+ .|.
T Consensus 18 I~sl~sAVKELvENSiDAG-----AT~I~I~~kd-yG~d~IEV~DNG~GI~~~n~~~---------l~lkh~TSKi~~f~ 82 (672)
T KOG1978|consen 18 ITSLVSAVKELVENSIDAG-----ATAIDIKVKD-YGSDSIEVSDNGSGISATDFEG---------LALKHTTSKIVSFA 82 (672)
T ss_pred eccHHHHHHHHHhcCcccC-----CceeeEecCC-CCcceEEEecCCCCCCccchhh---------hhhhhhhhcccchh
Confidence 4578899999999999962 4788888763 23 899999999998653321 33334433 466
Q ss_pred CCccccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEE
Q 000459 151 DNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSF 218 (1484)
Q Consensus 151 d~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F 218 (1484)
|-...+|=|--|=-++...|+|.....+.. ..+-.-.+..|.+. |... ...++ ....||+|+-
T Consensus 83 Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt-~~~~vgt~l~~Dh~-G~I~--~k~~~-ar~~GTTV~v 145 (672)
T KOG1978|consen 83 DLAVLFTLGFRGEALSSLCALGDVMISTRS-HSAKVGTRLVYDHD-GHII--QKKPV-ARGRGTTVMV 145 (672)
T ss_pred hhhhhhhhhhHHHHHHhhhhccceEEEEee-ccCccceeEEEccC-Ccee--eeccc-cCCCCCEEEH
Confidence 767778899999999999999987766654 11222233445432 1111 22222 3467999975
No 76
>PRK10337 sensor protein QseC; Provisional
Probab=93.58 E-value=0.093 Score=64.54 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=49.2
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTG 158 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sG 158 (1484)
|..++..+|.||+.... ....|.|.+.. ..|+|.|||.|||-+.-+ -+|..++.+.. ...
T Consensus 353 l~~vl~Nli~NA~k~~~---~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~--------~if~~f~~~~~-------~~~ 412 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSP---QGSVVDVTLNA--RNFTVRDNGPGVTPEALA--------RIGERFYRPPG-------QEA 412 (449)
T ss_pred HHHHHHHHHHHHHhhCC---CCCeEEEEEEe--eEEEEEECCCCCCHHHHH--------HhcccccCCCC-------CCC
Confidence 44567777777776543 23468887764 389999999999966422 14444433211 112
Q ss_pred CccCcccceeeecccEE
Q 000459 159 GRNGYGAKLTNIFSTEF 175 (1484)
Q Consensus 159 GlhGvGasvvNAlS~~f 175 (1484)
+.+|+|+++|..+.+.+
T Consensus 413 ~g~GlGL~iv~~i~~~~ 429 (449)
T PRK10337 413 TGSGLGLSIVRRIAKLH 429 (449)
T ss_pred CccchHHHHHHHHHHHc
Confidence 33899999998877654
No 77
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.46 E-value=0.081 Score=65.82 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=59.4
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
=|..|+--+|+||.|...+......|.|.|+.+++ .|+|.|+|.|||-+.-+. ||-. .|.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~--------iFe~----------G~S 488 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK--------IFEK----------GVS 488 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH--------HHhc----------Ccc
Confidence 36688999999999998863445889999997655 589999999999775321 2211 222
Q ss_pred cc-cCccCcccceeeecccEEE
Q 000459 156 TT-GGRNGYGAKLTNIFSTEFI 176 (1484)
Q Consensus 156 ~s-GGlhGvGasvvNAlS~~f~ 176 (1484)
+- .+.||+|+.+|-.+-+++-
T Consensus 489 tk~~~~rGiGL~Lvkq~V~~~~ 510 (537)
T COG3290 489 TKNTGGRGIGLYLVKQLVERLG 510 (537)
T ss_pred ccCCCCCchhHHHHHHHHHHcC
Confidence 33 3789999999988866543
No 78
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=93.40 E-value=0.099 Score=64.22 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=51.8
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++.++|.||+.... ....|.|++..+++ .|+|.|||.|||-+.-. -+|....+.... ..
T Consensus 369 l~~vl~nli~Na~~~~~---~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~--------~i~~~~~~~~~~-----~~ 432 (475)
T PRK11100 369 LRQALGNLLDNAIDFSP---EGGTITLSAEVDGEQVALSVEDQGPGIPDYALP--------RIFERFYSLPRP-----AN 432 (475)
T ss_pred HHHHHHHHHHHHHHhCC---CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHH--------HHHHHHccCCCC-----CC
Confidence 66788888888887642 23678888886555 49999999999965322 233333222111 11
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
..+.+|+|+..|+-+.+.
T Consensus 433 ~~~~~GlGL~i~~~~~~~ 450 (475)
T PRK11100 433 GRKSTGLGLAFVREVARL 450 (475)
T ss_pred CCCCcchhHHHHHHHHHH
Confidence 234579999998877654
No 79
>PRK09303 adaptive-response sensory kinase; Validated
Probab=93.36 E-value=0.089 Score=63.99 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=48.5
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEc-cCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQ-EHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~-d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
|.+++..+|.||+.... ....|.|.+.. +++ .|+|.|||.|||-+..+ -||....+... .
T Consensus 273 l~qvl~NLl~NAik~~~---~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~--------~iF~pf~~~~~------~ 335 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTP---EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQE--------RIFEDRVRLPR------D 335 (380)
T ss_pred HHHHHHHHHHHHHhcCC---CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHH--------HHccCceeCCC------C
Confidence 66788888888886543 23567777532 333 48999999999976432 24443332211 1
Q ss_pred cccCccCcccceeeeccc
Q 000459 156 TTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~ 173 (1484)
...+..|+|+++|.-+.+
T Consensus 336 ~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 336 EGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred CCCCcccccHHHHHHHHH
Confidence 112348999998876654
No 80
>PRK09835 sensor kinase CusS; Provisional
Probab=93.36 E-value=0.12 Score=64.04 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=50.1
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-|..++..+|.||+..... ...|.|.+..+++ .|+|.|||.|||-+.-+ -+|.....+.. ...
T Consensus 375 ~l~~vl~nll~Na~~~~~~---~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~--------~if~~f~~~~~----~~~ 439 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPA---GEAITVRCQEVDHQVQLVVENPGTPIAPEHLP--------RLFDRFYRVDP----SRQ 439 (482)
T ss_pred HHHHHHHHHHHHHHhcCCC---CCeEEEEEEEeCCEEEEEEEECCCCcCHHHHH--------HHhCCcccCCC----CCC
Confidence 3677888888888875432 2467777765544 58999999999976432 24444433211 111
Q ss_pred cccCccCcccceeeeccc
Q 000459 156 TTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~ 173 (1484)
...+.+|+|++.|.-+-+
T Consensus 440 ~~~~g~GlGL~i~~~i~~ 457 (482)
T PRK09835 440 RKGEGSGIGLAIVKSIVV 457 (482)
T ss_pred CCCCCcchHHHHHHHHHH
Confidence 223447999988866544
No 81
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=93.30 E-value=0.11 Score=68.39 Aligned_cols=83 Identities=16% Similarity=0.317 Sum_probs=54.2
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-|..++..+|+||+..... ...|.|.+..+++ .|+|.|||.|||-+..+ -+|....++.... .
T Consensus 597 ~L~~il~NLI~NAik~s~~---~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~--------~IFe~F~t~~~~~----~ 661 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPE---DGLIEVGLSQNKSHALLTVSNEGPPLPEDMGE--------QLFDSMVSVRDQG----A 661 (703)
T ss_pred HHHHHHHHHHHHHHHHCCC---CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHH--------HHhCCCeecCCCC----C
Confidence 3667888888888876532 2458888776554 48999999999977543 2555554432111 1
Q ss_pred cccCccCcccceeeecccEE
Q 000459 156 TTGGRNGYGAKLTNIFSTEF 175 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~f 175 (1484)
..++.+|+|+++|.-+.+.+
T Consensus 662 ~~~~g~GLGL~Ivr~Iv~~~ 681 (703)
T TIGR03785 662 QDQPHLGLGLYIVRLIADFH 681 (703)
T ss_pred CCCCCccHHHHHHHHHHHHc
Confidence 12234799999988776543
No 82
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=93.14 E-value=0.16 Score=63.08 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=92.1
Q ss_pred ccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeee
Q 000459 65 SKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGH 142 (1484)
Q Consensus 65 ~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~ 142 (1484)
.|+++.|+ +..+.|.|.||+|.. .+.|.|.+.. +| -+.|.|||-||--+-- + |+|.
T Consensus 21 AGEVI~RP-------~NAlKEliENSLDA~-----ST~I~V~vk~-GGLKLlQisDnG~GI~reDl-----~----ilCe 78 (694)
T KOG1979|consen 21 AGEVIQRP-------VNALKELIENSLDAN-----STSIDVLVKD-GGLKLLQISDNGSGIRREDL-----P----ILCE 78 (694)
T ss_pred ccchhhch-------HHHHHHHHhccccCC-----CceEEEEEec-CCeEEEEEecCCCccchhhh-----H----HHHH
Confidence 45667775 468999999999963 3789998863 45 4788999999975432 2 4555
Q ss_pred ccccc---cCCCCccccccCccCcccceeeeccc--EEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEE
Q 000459 143 LLTSS---NYDDNVKKTTGGRNGYGAKLTNIFST--EFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVS 217 (1484)
Q Consensus 143 L~aGg---kfdd~~yk~sGGlhGvGasvvNAlS~--~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~ 217 (1484)
=+|-+ ||.|-.--.|=|--|=-++- +|. +.+|++....+..-|+..|.+|.-.. .|+ +|. ++.||.|+
T Consensus 79 RftTSKL~kFEDL~~lsTyGFRGEALAS---iShVA~VtV~TK~~~~~cayrasY~DGkm~~-~pK--pcA-gk~GT~I~ 151 (694)
T KOG1979|consen 79 RFTTSKLTKFEDLFSLSTYGFRGEALAS---ISHVAHVTVTTKTAEGKCAYRASYRDGKMIA-TPK--PCA-GKQGTIIT 151 (694)
T ss_pred HhhhhhcchhHHHHhhhhcCccHHHHhh---hhheeEEEEEEeecCceeeeEEEeecccccc-CCC--Ccc-CCCceEEE
Confidence 55555 45553333344555533322 233 34455543333345999999984332 222 332 46899998
Q ss_pred EecCcccc-ccC----cc--CHHHHHHHHHHHHHhhcccCCceEEEeC
Q 000459 218 FKPDLAKF-NMT----HL--EDDVVALMKKRVVDLAGCLGKSVKVELN 258 (1484)
Q Consensus 218 F~PD~~iF-~~~----~~--~~d~l~ll~~Rl~dlA~~Ln~glkI~ln 258 (1484)
-. ..| ++. .+ .-+-...|..-+--.|. .|++|.+.+.
T Consensus 152 ve---dLFYN~~~Rrkal~~~~EE~~ki~dlv~ryAI-Hn~~VsFs~r 195 (694)
T KOG1979|consen 152 VE---DLFYNMPTRRKALRNHAEEYRKIMDLVGRYAI-HNPRVSFSLR 195 (694)
T ss_pred eh---HhhccCHHHHHHhcCcHHHHHHHHHHHHHHhe-eCCCcceEEe
Confidence 63 223 221 11 11212222233333455 6888888775
No 83
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=93.09 E-value=0.14 Score=61.17 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=47.9
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++..+|.||+.... ....|.|.+..+++ .|+|.|||.|||-+..+. +|...... + .
T Consensus 248 l~~il~nLi~NA~k~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~---~-----~ 308 (356)
T PRK10755 248 LRLLLRNLVENAHRYSP---EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGE--------LSKAFVRM---D-----S 308 (356)
T ss_pred HHHHHHHHHHHHHhhCC---CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHH--------hCCCeEeC---C-----C
Confidence 45677888888876532 23568888866544 589999999999764322 22222211 1 1
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
.++..|+|+.+|.-+.+.
T Consensus 309 ~~~g~GlGL~i~~~i~~~ 326 (356)
T PRK10755 309 RYGGIGLGLSIVSRITQL 326 (356)
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 234478998887765543
No 84
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=92.90 E-value=0.17 Score=66.37 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=51.3
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCccccccc-ccCCCcccceEEeeeccccccCCCCcc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEI-HQEEGVYVPELIFGHLLTSSNYDDNVK 154 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~-h~~~~~~~~Elift~L~aGgkfdd~~y 154 (1484)
-|.+++.++|.||++.... ...|.|.+..+++ .|+|.|||.|||-+. .+ -+|...+++
T Consensus 579 ~l~~vl~nLl~NAik~~~~---~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~--------~lF~pf~~~-------- 639 (679)
T TIGR02916 579 RLERVLGHLVQNALEATPG---EGRVAIRVERECGAARIEIEDSGCGMSPAFIRE--------RLFKPFDTT-------- 639 (679)
T ss_pred HHHHHHHHHHHHHHHhCCC---CCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHH--------hcCCCCCCC--------
Confidence 4778999999999987542 2568888876544 589999999999764 22 244443322
Q ss_pred ccccCccCcccceeeeccc
Q 000459 155 KTTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 155 k~sGGlhGvGasvvNAlS~ 173 (1484)
.++.+|+|+..+.-+-+
T Consensus 640 --~~~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 640 --KGAGMGIGVYECRQYVE 656 (679)
T ss_pred --CCCCcchhHHHHHHHHH
Confidence 12447999998876644
No 85
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=92.55 E-value=0.23 Score=61.04 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=49.8
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|.+++.++|.||+... .+.|.|.+..+++ .|+|.|||.|||-+..+ -+|..++.+.+. ...
T Consensus 354 l~~~l~nli~NA~~~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~~~~~~~~----~~~ 416 (461)
T PRK09470 354 LASALENIVRNALRYS-----HTKIEVAFSVDKDGLTITVDDDGPGVPEEERE--------QIFRPFYRVDEA----RDR 416 (461)
T ss_pred HHHHHHHHHHHHHHhC-----CCcEEEEEEEECCEEEEEEEECCCCCCHHHHH--------HhcCCCccCCcc----cCC
Confidence 5677888888888653 2457777665544 48999999999976432 245544433221 112
Q ss_pred ccCccCcccceeeeccc
Q 000459 157 TGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~ 173 (1484)
..+..|+|+++|+-+-+
T Consensus 417 ~~~g~GlGL~iv~~~v~ 433 (461)
T PRK09470 417 ESGGTGLGLAIVENAIQ 433 (461)
T ss_pred CCCCcchhHHHHHHHHH
Confidence 23457999998875543
No 86
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.35 E-value=0.19 Score=60.73 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=40.4
Q ss_pred cchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccc
Q 000459 77 PGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIH 128 (1484)
Q Consensus 77 pGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h 128 (1484)
..|+.++.|.|.|++=++. .+.+.|++..+++ .++|.|||+|.+++..
T Consensus 278 ~~l~rivQEaltN~~rHa~----A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQ----ATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHHHHHhccC----CceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 4789999999999996654 4889999887665 5899999999998854
No 87
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=92.15 E-value=0.23 Score=60.73 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=49.5
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++..+|+||+... ...|.|++..+++ .|+|.|||.|||.+.-+ -+|.....+.. . +
T Consensus 332 l~~il~NLl~NA~k~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~~~~~f~~~~~----~-~- 392 (435)
T PRK09467 332 IKRALANLVVNAARYG-----NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLK--------HLFQPFTRGDS----A-R- 392 (435)
T ss_pred HHHHHHHHHHHHHHhC-----CCeEEEEEEecCCEEEEEEEecCCCcCHHHHH--------HhcCCcccCCC----C-C-
Confidence 4567777777777542 2568888876644 58999999999976422 24444433211 1 1
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
.++.+|+|+++|.-+.+.
T Consensus 393 ~~~g~GlGL~iv~~i~~~ 410 (435)
T PRK09467 393 GSSGTGLGLAIVKRIVDQ 410 (435)
T ss_pred CCCCeehhHHHHHHHHHH
Confidence 124589999998877654
No 88
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=92.15 E-value=0.4 Score=61.42 Aligned_cols=44 Identities=36% Similarity=0.508 Sum_probs=34.3
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVE 126 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 126 (1484)
|++++.|+|.||+-+.. ...|.|.+..+++ .|+|.|||.|||-+
T Consensus 470 l~~il~ell~NA~kha~----a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQ----ASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCC----CCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 77889999999987643 2568888776544 48999999999964
No 89
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=92.14 E-value=0.19 Score=63.44 Aligned_cols=45 Identities=22% Similarity=0.410 Sum_probs=34.9
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVE 126 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 126 (1484)
-+++++.|+|.||+.... .+.|.|++..+++ .++|.|||.|||.+
T Consensus 410 ~L~ril~nlL~NAiKha~----~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHAD----ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHHhCC----CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 367889999999997643 2578888876655 48999999999854
No 90
>PRK10815 sensor protein PhoQ; Provisional
Probab=91.80 E-value=0.2 Score=63.12 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=45.0
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++..+|+||+.... ..|.|.+..+++ .|+|.|||.|||-+..+ .+|...+.+. .
T Consensus 379 l~~vl~NLi~NAik~~~-----~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~--------~iF~~f~~~~--------~ 437 (485)
T PRK10815 379 FMEVMGNVLDNACKYCL-----EFVEISARQTDEHLHIVVEDDGPGIPESKRE--------LIFDRGQRAD--------T 437 (485)
T ss_pred HHHHHHHHHHHHHHhcC-----CcEEEEEEEeCCEEEEEEEECCCCcCHHHHH--------HHhCCcccCC--------C
Confidence 44556666666664432 346666655444 58999999999976432 2454332211 1
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
+.+.+|+|+++|.-+-+.
T Consensus 438 ~~~G~GLGL~Ivk~iv~~ 455 (485)
T PRK10815 438 LRPGQGLGLSVAREITEQ 455 (485)
T ss_pred CCCCcchhHHHHHHHHHH
Confidence 123379999998877553
No 91
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=91.76 E-value=0.29 Score=57.94 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=49.2
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC------------CEEEEEECCcccccccccCCCcccceEEeeeccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH------------DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLT 145 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~------------gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~a 145 (1484)
-|..++..+|.||+.... .....|.|.+.... -.|+|.|||.|||-+..+ -+|...++
T Consensus 237 ~l~~vl~nLl~NA~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~--------~iF~~~~~ 306 (348)
T PRK11073 237 QIEQVLLNIVRNALQALG--PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQD--------TLFYPMVS 306 (348)
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHh--------hccCCccc
Confidence 477888888899887652 23356766653210 158999999999977542 24433322
Q ss_pred cccCCCCccccccCccCcccceeeeccc
Q 000459 146 SSNYDDNVKKTTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 146 Ggkfdd~~yk~sGGlhGvGasvvNAlS~ 173 (1484)
..++.+|+|+++|.-+-+
T Consensus 307 ----------~~~~g~GlGL~i~~~iv~ 324 (348)
T PRK11073 307 ----------GREGGTGLGLSIARNLID 324 (348)
T ss_pred ----------CCCCCccCCHHHHHHHHH
Confidence 123458999999877654
No 92
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=91.69 E-value=0.41 Score=55.45 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=51.3
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++.++|.||+.... ....|.|.+..+++ .++|.|||.|||.+..+ -+|..+....+ ....
T Consensus 230 l~~vl~nll~Nai~~~~---~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~--------~if~~~~~~~~----~~~~ 294 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTP---EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLP--------RLTERFYRVDK----SRSR 294 (333)
T ss_pred HHHHHHHHHHHhheeCC---CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHh--------hhccCceecCc----cccc
Confidence 66788999999987643 23568887765544 48999999999987543 24444332111 1111
Q ss_pred ccCccCcccceeeeccc
Q 000459 157 TGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~ 173 (1484)
.++..|+|+++++-+.+
T Consensus 295 ~~~g~glGL~~~~~~~~ 311 (333)
T TIGR02966 295 DTGGTGLGLAIVKHVLS 311 (333)
T ss_pred CCCCCcccHHHHHHHHH
Confidence 23346999998877654
No 93
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=91.27 E-value=0.27 Score=61.88 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=48.8
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC---CEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH---DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~---gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
|..++.+++.||+..... ...|.|.+..++ -.|+|.|||.|||.+.... +|-.+.+
T Consensus 501 l~~~~~nli~na~~~~~~---~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~--------~f~~~~~---------- 559 (607)
T PRK11360 501 LKQVLLNILINAVQAISA---RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKK--------IFDPFFT---------- 559 (607)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhh--------hcCCcee----------
Confidence 677888888888876432 356777775432 3699999999999875321 2332221
Q ss_pred cccCccCcccceeeeccc
Q 000459 156 TTGGRNGYGAKLTNIFST 173 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~ 173 (1484)
..++..|+|+.+++-+-+
T Consensus 560 ~~~~g~glGL~~~~~~~~ 577 (607)
T PRK11360 560 TKAKGTGLGLALSQRIIN 577 (607)
T ss_pred CCCCCCchhHHHHHHHHH
Confidence 113347999999886654
No 94
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=91.15 E-value=0.25 Score=66.30 Aligned_cols=94 Identities=17% Similarity=0.313 Sum_probs=58.1
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEcc---------------CC--EEEEEECCcccccccccCCCcccceEEe
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQE---------------HD--LISVHNSGDGVPVEIHQEEGVYVPELIF 140 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d---------------~g--sIsV~DnGrGIPvd~h~~~~~~~~Elif 140 (1484)
-|..++..+|.||+..... ...|.|.+..+ ++ .|+|.|||.|||-+.-+ -||
T Consensus 560 ~L~qvl~NLl~NAik~~~~---~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~--------~iF 628 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDG---AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLP--------HIF 628 (828)
T ss_pred HHHHHHHHHHHHHHHHccc---CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHH--------Hhh
Confidence 3677888888888876432 35677776543 22 58999999999977532 245
Q ss_pred eeccccccCCCCccccccCccCcccceeeecccE----EEEEEEecCCCeEEEEEEe
Q 000459 141 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTE----FIIETADGKRLKKYKQVFT 193 (1484)
Q Consensus 141 t~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~----f~Vev~d~rdGk~y~q~f~ 193 (1484)
...++.. .+.+|+|+++|.-+-+. +.|+.. ...|-.+...+-
T Consensus 629 e~F~~~~----------~~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 674 (828)
T PRK13837 629 EPFFTTR----------AGGTGLGLATVHGIVSAHAGYIDVQST-VGRGTRFDVYLP 674 (828)
T ss_pred CCcccCC----------CCCCcchHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEe
Confidence 4443221 14589999988766554 333332 123566666664
No 95
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=90.98 E-value=0.29 Score=65.91 Aligned_cols=77 Identities=18% Similarity=0.374 Sum_probs=50.6
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|.+++..+|.||+.... ...|.|.+..+++ .|+|.|||.|||-+..+ -+|..+..+. .
T Consensus 514 l~~il~NLl~NAik~~~----~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~--------~ 573 (921)
T PRK15347 514 LRQILVNLLGNAVKFTE----TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQ--------QIFTPFYQAD--------T 573 (921)
T ss_pred HHHHHHHHHHHHhhcCC----CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHH--------HHhcCcccCC--------C
Confidence 66778888888886532 2358777765544 58899999999976532 2444433221 1
Q ss_pred ccCccCcccceeeecccEE
Q 000459 157 TGGRNGYGAKLTNIFSTEF 175 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~f 175 (1484)
..|..|+|+++|+-+.+.+
T Consensus 574 ~~~g~GLGL~i~~~~~~~~ 592 (921)
T PRK15347 574 HSQGTGLGLTIASSLAKMM 592 (921)
T ss_pred CCCCCchHHHHHHHHHHHc
Confidence 2345899999998776544
No 96
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=90.48 E-value=0.79 Score=62.99 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q 000459 1143 KVQGLLADRDKLNEEVDDLRKA 1164 (1484)
Q Consensus 1143 evekL~~E~~el~~ei~~L~~t 1164 (1484)
++.+|.+|++.++++++.++..
T Consensus 843 e~~rLekel~kl~Kel~kl~~~ 864 (1052)
T PRK14900 843 ETARVDKEIGKVDQDLAVLERK 864 (1052)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666544
No 97
>PRK10490 sensor protein KdpD; Provisional
Probab=89.76 E-value=0.34 Score=65.63 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=52.6
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-|.+++..+|.||+.... ....|.|.+..+++ .|+|.|||.|||-+..+ -+|..++++.+-
T Consensus 778 ~L~qVL~NLL~NAik~s~---~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~--------~IFepF~~~~~~------ 840 (895)
T PRK10490 778 LFERVLINLLENAVKYAG---AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQ--------LIFDKFARGNKE------ 840 (895)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHH--------HhcCCCccCCCC------
Confidence 356788888888886542 34578887776544 48999999999976432 256555443221
Q ss_pred cccCccCcccceeeecccE
Q 000459 156 TTGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~ 174 (1484)
.+.+.+|+|+++|.-+-+.
T Consensus 841 ~~~~G~GLGL~Ivk~ive~ 859 (895)
T PRK10490 841 SAIPGVGLGLAICRAIVEV 859 (895)
T ss_pred CCCCCccHHHHHHHHHHHH
Confidence 1223489999988776554
No 98
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=89.71 E-value=0.48 Score=59.73 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=52.6
Q ss_pred hhhcCCCceeecccccceeEEEEeccccceeeeecccccchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEE
Q 000459 39 HILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISV 116 (1484)
Q Consensus 39 hVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV 116 (1484)
+=|+|+.|=-=-.+......||.-+. --|-+++--+|.||+|... +..-..|.|.+-.+++ .|+|
T Consensus 470 ~~R~~~~~~~l~~~~~~~~~~V~~~~------------iRLeQVLvNLl~NALDA~~-~~~~~~i~i~~~~~~~~v~l~V 536 (603)
T COG4191 470 RGRLRAAGVELELDLPDAPLWVMANE------------IRLEQVLVNLLQNALDAMA-GQEDRRLSIRAQREGGQVVLTV 536 (603)
T ss_pred HHhhhccCceeeccCCCCCceeecch------------hhHHHHHHHHHHHHHHHhc-CCCCCeeEEEEEecCCeEEEEE
Confidence 33556655433333333356777543 1367889999999999764 3345779999887755 5899
Q ss_pred EECCcccccccc
Q 000459 117 HNSGDGVPVEIH 128 (1484)
Q Consensus 117 ~DnGrGIPvd~h 128 (1484)
.|||+|||.+.-
T Consensus 537 rDnGpGi~~e~~ 548 (603)
T COG4191 537 RDNGPGIAPEAL 548 (603)
T ss_pred ccCCCCCCHHHH
Confidence 999999998853
No 99
>PRK13560 hypothetical protein; Provisional
Probab=89.37 E-value=0.64 Score=61.32 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=36.5
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEcc-CC--EEEEEECCcccccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQE-HD--LISVHNSGDGVPVE 126 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d-~g--sIsV~DnGrGIPvd 126 (1484)
+..++.++|.||+.....++....|.|.+... ++ .|+|.|||.|||-+
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 44588999999998765444456788888755 33 58999999999965
No 100
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=89.01 E-value=0.3 Score=66.23 Aligned_cols=81 Identities=16% Similarity=0.315 Sum_probs=52.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC---EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD---LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVK 154 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g---sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~y 154 (1484)
-|..++..+|.||+.... ...|.|.+...++ .|+|.|+|.|||-+..+ -||..+..+..
T Consensus 579 ~l~~il~nLi~NAik~~~----~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~------ 640 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTD----RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQA--------TLFDAFTQADG------ 640 (968)
T ss_pred HHHHHHHHHHHHHHhhCC----CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHH--------HHHhhhhccCC------
Confidence 467888999999997542 2457666654434 49999999999977432 24444433320
Q ss_pred ccccCccCcccceeeecccEEE
Q 000459 155 KTTGGRNGYGAKLTNIFSTEFI 176 (1484)
Q Consensus 155 k~sGGlhGvGasvvNAlS~~f~ 176 (1484)
....|..|+|+++|.-+.+.+-
T Consensus 641 ~~~~~g~GLGL~i~~~l~~~~g 662 (968)
T TIGR02956 641 RRRSGGTGLGLAISQRLVEAMD 662 (968)
T ss_pred CCCCCCccHHHHHHHHHHHHcC
Confidence 1111448999999888776543
No 101
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.53 E-value=0.48 Score=53.99 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=36.4
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC--CEEEEEECCccccccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH--DLISVHNSGDGVPVEI 127 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~--gsIsV~DnGrGIPvd~ 127 (1484)
-|-+++..+|.||++... ...|.|.+...+ -.++|.|||.|||.+.
T Consensus 228 ~l~~vl~nLi~NAi~~~~----~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~ 275 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTP----GGEITISVRQDDEQVTISVEDTGPGIPEEE 275 (336)
T ss_pred HHHHHHHHHHHHHhccCC----CCeEEEEEEecCCeEEEEEEcCCCCCCHHH
Confidence 466788888888887643 378888888664 3799999999999875
No 102
>PRK10547 chemotaxis protein CheA; Provisional
Probab=88.24 E-value=0.82 Score=59.77 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHHHHhhhhcccC---------CCCCeEEEEEEccCCE--EEEEECCccccccc
Q 000459 84 DEILVNAADNKQRD---------PKMDAVKVVIDQEHDL--ISVHNSGDGVPVEI 127 (1484)
Q Consensus 84 dEIL~Na~De~~~~---------~~~~~I~V~i~~d~gs--IsV~DnGrGIPvd~ 127 (1484)
-.+|.||+|+.+.. +....|.|....+++. |+|.|||+|||.+.
T Consensus 391 ~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~ 445 (670)
T PRK10547 391 THLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRER 445 (670)
T ss_pred HHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHH
Confidence 37899999986431 2345788888766554 89999999999764
No 103
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=87.77 E-value=1 Score=60.92 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=56.9
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|..++..+|.||+.... ...|.|.+..+++ .|+|.|||.|||-+..+. +|....... .
T Consensus 562 l~qil~NLl~NAik~~~----~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~--------~ 621 (914)
T PRK11466 562 IRQVITNLLSNALRFTD----EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAE--------IFQPFVQVS--------G 621 (914)
T ss_pred HHHHHHHHHHHHHHhCC----CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHH--------HhchhhcCC--------C
Confidence 55677778888876532 2468888776544 489999999999775322 333332211 1
Q ss_pred ccCccCcccceeeecccEEE--EEEEec-CCCeEEEEEE
Q 000459 157 TGGRNGYGAKLTNIFSTEFI--IETADG-KRLKKYKQVF 192 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~f~--Vev~d~-rdGk~y~q~f 192 (1484)
..|.+|+|+++|.-+.+.+- +++.+. ..|-.+...+
T Consensus 622 ~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~l 660 (914)
T PRK11466 622 KRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRL 660 (914)
T ss_pred CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEE
Confidence 12458999999887776543 222211 2355555555
No 104
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=87.23 E-value=0.82 Score=61.87 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=58.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC-----CEEEEEECCcccccccccCCCcccceEEeeeccccccCCCC
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH-----DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDN 152 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~-----gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~ 152 (1484)
-|.+++.-+|.||+.... ...|.|.+.... -.|+|.|+|.|||-+..+. ||....+...
T Consensus 565 ~L~QVL~NLL~NAik~t~----~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~--------IFePF~t~~~---- 628 (894)
T PRK10618 565 ALRKILLLLLNYAITTTA----YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDN--------LHFPFLNQTQ---- 628 (894)
T ss_pred HHHHHHHHHHHHHHHhCC----CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHH--------hcCccccCCC----
Confidence 467888888888886532 235666665321 2589999999999775322 4444332211
Q ss_pred ccccccCccCcccceeeecccEEE--EEEEe-cCCCeEEEEEEe
Q 000459 153 VKKTTGGRNGYGAKLTNIFSTEFI--IETAD-GKRLKKYKQVFT 193 (1484)
Q Consensus 153 ~yk~sGGlhGvGasvvNAlS~~f~--Vev~d-~rdGk~y~q~f~ 193 (1484)
....|+..|+|+++|.-+.+.+- +++.+ ...|-.|...+-
T Consensus 629 -~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LP 671 (894)
T PRK10618 629 -GDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLK 671 (894)
T ss_pred -CCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEE
Confidence 11224458999999988776543 22221 123555555553
No 105
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=86.11 E-value=1.1 Score=53.39 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=38.9
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVE 126 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 126 (1484)
-||+++.|.|.|-|-++.+ +.|.|.++.++. ..+|.|||.|+|.+
T Consensus 410 TLyRl~QE~LNNI~KHA~A----S~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHADA----SAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhcccc----ceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 5899999999999988765 788888888754 47999999999987
No 106
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=85.98 E-value=4.1 Score=43.50 Aligned_cols=82 Identities=24% Similarity=0.285 Sum_probs=54.0
Q ss_pred hHhHHHHHHHHhhhhcccC-CC--CCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 79 LYKIFDEILVNAADNKQRD-PK--MDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~-~~--~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
+-..+.|.+.|++-++-+. +. +-.|.++++.+.=.|.|+|.|.||+.-.- .+... |.
T Consensus 41 l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~~~~----------~~~~~----------~~ 100 (146)
T COG2172 41 LAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIEDLEE----------SLGPG----------DT 100 (146)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCCHHH----------hcCCC----------CC
Confidence 4467999999999987652 22 23445555554447899999977663211 11111 23
Q ss_pred cccCc--cCcccceeeecccEEEEEEE
Q 000459 156 TTGGR--NGYGAKLTNIFSTEFIIETA 180 (1484)
Q Consensus 156 ~sGGl--hGvGasvvNAlS~~f~Vev~ 180 (1484)
..+++ .|+|+-+++-|...|.++-.
T Consensus 101 ~~~~~~~~G~Gl~l~~~~~D~~~~~~~ 127 (146)
T COG2172 101 TAEGLQEGGLGLFLAKRLMDEFSYERS 127 (146)
T ss_pred CCcccccccccHHHHhhhheeEEEEec
Confidence 34444 69999999999999998853
No 107
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=85.12 E-value=1.3 Score=60.48 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=50.4
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|.+++..+|.||+.... ...|.|.+..+++ .|+|.|+|.|||-+..+. +|..+..... ....
T Consensus 563 L~qvl~NLl~NAik~t~----~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~--------lFepF~~~~~----~~~~ 626 (924)
T PRK10841 563 LQQVISNLLSNAIKFTD----TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVR--------LFDPFFQVGT----GVQR 626 (924)
T ss_pred HHHHHHHHHHHHHhhCC----CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHH--------HhcccccCCC----CCCC
Confidence 66788888888886532 2346666655444 588999999999764321 4444433211 1112
Q ss_pred ccCccCcccceeeecccEE
Q 000459 157 TGGRNGYGAKLTNIFSTEF 175 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~f 175 (1484)
..+-.|+|+++|.-+.+.+
T Consensus 627 ~~~GtGLGL~I~k~lv~~~ 645 (924)
T PRK10841 627 NFQGTGLGLAICEKLINMM 645 (924)
T ss_pred CCCCeehhHHHHHHHHHHC
Confidence 2234799999988776543
No 108
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=84.59 E-value=1.1 Score=60.60 Aligned_cols=80 Identities=15% Similarity=0.307 Sum_probs=45.8
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEE--ccC-C----EEEEEECCcccccccccCCCcccceEEeeeccccccCCC
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVID--QEH-D----LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDD 151 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~--~d~-g----sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd 151 (1484)
|..++..+|.||+..... ..|.|.+. ... + .|+|.|||.|||-+..+ -+|..+..+.+
T Consensus 409 l~~vl~NLl~NAik~~~~----g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~--- 473 (919)
T PRK11107 409 LQQIITNLVGNAIKFTES----GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQS--------QLFQAFRQADA--- 473 (919)
T ss_pred HHHHHHHHHHHHhhcCCC----CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHH--------HHhhhhccCCC---
Confidence 567777888888765321 33444432 211 1 48999999999976432 14443332211
Q ss_pred CccccccCccCcccceeeecccE
Q 000459 152 NVKKTTGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 152 ~~yk~sGGlhGvGasvvNAlS~~ 174 (1484)
......|..|+|+++|.-+-+.
T Consensus 474 -~~~~~~~g~GLGL~i~~~i~~~ 495 (919)
T PRK11107 474 -SISRRHGGTGLGLVITQKLVNE 495 (919)
T ss_pred -CCCCCCCCcchhHHHHHHHHHH
Confidence 1112234589999988766554
No 109
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=83.77 E-value=1.4 Score=58.59 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=50.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEcc-CC--EEEEEECCcccccccccCCCcccceEEeeeccccccCCCCcc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQE-HD--LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVK 154 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d-~g--sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~y 154 (1484)
-|.+++..+|.||++... ...|.|.+..+ ++ .|+|.|||.|||-+..+. +|..+++... ..-
T Consensus 398 ~l~qvl~NLl~NAik~~~----~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------iF~~f~~~~~---~~~ 462 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQ----QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDK--------IFAMYYQVKD---SHG 462 (779)
T ss_pred HHHHHHHHHHHHHHHhCC----CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHH--------HHHHhhcccC---CCC
Confidence 467888889999987642 23566666544 22 689999999999765321 4444433210 001
Q ss_pred ccccCccCcccceeeecccE
Q 000459 155 KTTGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 155 k~sGGlhGvGasvvNAlS~~ 174 (1484)
...+|..|+|+++|.-+-+.
T Consensus 463 ~~~~~GtGLGL~i~~~iv~~ 482 (779)
T PRK11091 463 GKPATGTGIGLAVSKRLAQA 482 (779)
T ss_pred CCCCCCcchHHHHHHHHHHH
Confidence 11234579999988776554
No 110
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=82.65 E-value=3 Score=57.51 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHc--cCchhHHHHHHHHH
Q 000459 1138 TLTLEKVQGLLADRDKLNEEVDDLRK--ATPESLWVKDLDAL 1177 (1484)
Q Consensus 1138 ~LT~eevekL~~E~~el~~ei~~L~~--ts~~dLW~~DLd~f 1177 (1484)
+|++ ++++|++|++.+++++....- +.|.+.-.++-..+
T Consensus 846 rLek-el~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl 886 (1052)
T PRK14900 846 RVDK-EIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA 886 (1052)
T ss_pred hHHH-HHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH
Confidence 3443 789999999999999988664 56766655555544
No 111
>PRK13557 histidine kinase; Provisional
Probab=82.44 E-value=1.6 Score=54.75 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=56.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEc---------------cCC--EEEEEECCcccccccccCCCcccceEEe
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQ---------------EHD--LISVHNSGDGVPVEIHQEEGVYVPELIF 140 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~---------------d~g--sIsV~DnGrGIPvd~h~~~~~~~~Elif 140 (1484)
-|.+++..+|.||++....+ ..|.|.... +++ .|+|.|||.|||.+..+ .+|
T Consensus 277 ~l~~vl~nll~NA~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~--------~if 345 (540)
T PRK13557 277 QAEVALLNVLINARDAMPEG---GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILA--------RVM 345 (540)
T ss_pred HHHHHHHHHHHHHHHhcccC---CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHH--------hcc
Confidence 36788999999999765432 446555431 222 58999999999977532 255
Q ss_pred eeccccccCCCCccccccCccCcccceeeecccE----EEEEEEecCCCeEEEEEEe
Q 000459 141 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTE----FIIETADGKRLKKYKQVFT 193 (1484)
Q Consensus 141 t~L~aGgkfdd~~yk~sGGlhGvGasvvNAlS~~----f~Vev~d~rdGk~y~q~f~ 193 (1484)
...++.. ..++.-|+|+++|.-+-+. +.++.. ...|-.+...|-
T Consensus 346 ~~~~~~~--------~~~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~G~~f~i~lP 393 (540)
T PRK13557 346 DPFFTTK--------EEGKGTGLGLSMVYGFAKQSGGAVRIYSE-VGEGTTVRLYFP 393 (540)
T ss_pred CCCcccC--------CCCCCCCccHHHHHHHHHHCCCEEEEEec-CCCceEEEEEee
Confidence 5544321 1233468888876654443 344432 123556666553
No 112
>PRK13559 hypothetical protein; Provisional
Probab=81.23 E-value=3.3 Score=49.54 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=33.7
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEE--EccCC--EEEEEECCcccccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVI--DQEHD--LISVHNSGDGVPVE 126 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i--~~d~g--sIsV~DnGrGIPvd 126 (1484)
.|..+|.|++.||+...........|.|.+ ..+++ .|+|.|||.|+|-.
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 478899999999997632112236788887 43333 67888999876643
No 113
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=81.23 E-value=0.92 Score=57.51 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=83.0
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCc---cc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNV---KK 155 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~---yk 155 (1484)
|-.+|.|++-|++|.. ++.|.|-++...-+|.|.|||-|+--+-.. ++|.-++-+||..-. --
T Consensus 22 la~~VeElv~NSiDA~-----At~V~v~V~~~t~sv~ViDdG~G~~rdDl~---------~lg~ry~TSK~h~~ndl~~~ 87 (1142)
T KOG1977|consen 22 LAQCVEELVLNSIDAE-----ATCVAVRVNMETFSVQVIDDGFGMGRDDLE---------KLGNRYFTSKCHSVNDLENP 87 (1142)
T ss_pred HHHHHHHHHhhccccC-----ceEEEEEecCceeEEEEEecCCCccHHHHH---------HHHhhhhhhhceeccccccc
Confidence 4578999999999863 478888887777899999999999865322 223333333443211 11
Q ss_pred cccCccCcccceeee--cccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEe------cCcccccc
Q 000459 156 TTGGRNGYGAKLTNI--FSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFK------PDLAKFNM 227 (1484)
Q Consensus 156 ~sGGlhGvGasvvNA--lS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~------PD~~iF~~ 227 (1484)
-+=|-.|- ++.|+ .|..+...-.-+|.-+.+.-.|..| ..-...-...+....||+|+-. |=..++.
T Consensus 88 ~tyGfRGe--ALasIsd~s~l~v~skkk~r~~~~~~kk~~~g--s~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRRr~k- 162 (1142)
T KOG1977|consen 88 RTYGFRGE--ALASISDMSSLVVISKKKNRTMKTFVKKFQSG--SALKALEIDVTRASSGTTVTVYDLFYQLPVRRRLK- 162 (1142)
T ss_pred cccccchh--hhhhhhhhhhhhhhhhhcCCchhHHHHHHhcc--ccceecccccccccCCcEEEeHHhhhcchhhhhhh-
Confidence 12233332 33332 2322222111111111111122222 1111111122345679999853 1111111
Q ss_pred CccC-HHHHHHHHHHHHHhhcccCCceEEEeCCc
Q 000459 228 THLE-DDVVALMKKRVVDLAGCLGKSVKVELNGH 260 (1484)
Q Consensus 228 ~~~~-~d~l~ll~~Rl~dlA~~Ln~glkI~lnde 260 (1484)
.-+ .-++.-|++|+..+|- +.|.|.+.+.+.
T Consensus 163 -~~~P~k~fe~Ik~~i~~i~l-mHp~iSfsv~~~ 194 (1142)
T KOG1977|consen 163 -CMDPRKEFEKIKQRIEAISL-MHPSISFSVRND 194 (1142)
T ss_pred -cCCHHHHHHHHHHHHHHHHh-hccceeEEEEec
Confidence 112 2345568899999997 779898877543
No 114
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=80.83 E-value=2 Score=60.05 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=48.5
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEE---ccCC----EEEEEECCcccccccccCCCcccceEEeeeccccccCC
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVID---QEHD----LISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYD 150 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~---~d~g----sIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfd 150 (1484)
-|.+++..+|.||++.... ..|.|.+. .+++ .|+|.|||.|||-+..+ -+|....++..
T Consensus 828 ~l~qvl~NLl~NAik~~~~----g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~iF~~f~~~~~-- 893 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTE----GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQ--------QLFKRYSQTSA-- 893 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCC----CCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHH--------Hhhcccccccc--
Confidence 3678899999999976532 23444331 1112 37999999999976532 24444433211
Q ss_pred CCccccccCccCcccceeeecccEE
Q 000459 151 DNVKKTTGGRNGYGAKLTNIFSTEF 175 (1484)
Q Consensus 151 d~~yk~sGGlhGvGasvvNAlS~~f 175 (1484)
...++.+|+|+++|.-+-+.+
T Consensus 894 ----~~~~~G~GLGL~i~~~iv~~~ 914 (1197)
T PRK09959 894 ----GRQQTGSGLGLMICKELIKNM 914 (1197)
T ss_pred ----CCCCCCcCchHHHHHHHHHHc
Confidence 011234899999988776544
No 115
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=80.15 E-value=4.2 Score=36.91 Aligned_cols=72 Identities=29% Similarity=0.352 Sum_probs=48.7
Q ss_pred EEEEecccchhHHHHhccccccCceeeecccCccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEE
Q 000459 447 TLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMI 526 (1484)
Q Consensus 447 eLflvEGDSA~g~ak~Gr~~~~R~~qav~PLrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiI 526 (1484)
.++||||.+-.-+..+.. .....++++.|...+ .-...+...++. +.+|+|
T Consensus 2 ~viivEg~~d~~~l~~~~----~~~~~~~~~~G~~~~------------~~~~~~~~~~~~-------------~~~v~i 52 (83)
T cd00188 2 KLIIVEGPSDALALAQAG----GYGGAVVALGGHALN------------KTRELLKRLLGE-------------AKEVII 52 (83)
T ss_pred EEEEEecHHHHHHHHHHc----CCCEEEEEEccEEcH------------HHHHHHHHHhcC-------------CCEEEE
Confidence 689999999777666653 225678899998776 112222222221 578999
Q ss_pred eecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHh
Q 000459 527 MTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHS 575 (1484)
Q Consensus 527 mtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~ 575 (1484)
++| .|..|.++...+......
T Consensus 53 ~~D----------------------------~D~~g~~~~~~~~~~~~~ 73 (83)
T cd00188 53 ATD----------------------------ADREGEAIALRLLELLKS 73 (83)
T ss_pred EcC----------------------------CChhHHHHHHHHHHHHHh
Confidence 999 999998666666655544
No 116
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=79.96 E-value=3 Score=53.01 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.2
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEcc-CC--EEEEEECCccccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQE-HD--LISVHNSGDGVPV 125 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d-~g--sIsV~DnGrGIPv 125 (1484)
++.++.++|.||+... ....|.|.+..+ ++ .|+|.|||+|||-
T Consensus 472 l~qv~~nll~NA~k~~----~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 472 LLQIIREATLNAIKHA----NASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHHHHhcC----CCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 5678888888888653 235788887654 34 5899999999994
No 117
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=75.60 E-value=1.8 Score=51.64 Aligned_cols=110 Identities=21% Similarity=0.316 Sum_probs=70.6
Q ss_pred chHhHHHHHHHHhhhhcccCCCCCeEEEEEEccC--CEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccc
Q 000459 78 GLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEH--DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKK 155 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~--gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk 155 (1484)
-+.+.+|-||.||+-= .+.+..|.|.+...+ =.|||.|.|-|||-.-. +-||.....+.| +-.
T Consensus 342 K~tQVldNii~NA~KY---sP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~--------~~iFdrfyRvdk----ARs 406 (459)
T COG5002 342 KMTQVLDNIISNALKY---SPDGGRITVSVKQRETWVEISISDQGLGIPKEDL--------EKIFDRFYRVDK----ARS 406 (459)
T ss_pred HHHHHHHHHHHHHhhc---CCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhH--------HHHHHHHhhhhh----hhh
Confidence 3567899999999843 344578888887643 26899999999996543 236766655543 333
Q ss_pred cccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCcccccc
Q 000459 156 TTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNM 227 (1484)
Q Consensus 156 ~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~ 227 (1484)
-++|.-|+|++.+--. |+. ..|.+| .. +....||+++|.--++.+..
T Consensus 407 R~~gGTGLGLaIakei-----V~~---hgG~iW----A~-------------s~~gkgtt~~ftLPy~~~~~ 453 (459)
T COG5002 407 RKMGGTGLGLAIAKEI-----VQA---HGGRIW----AE-------------SEEGKGTTFSFTLPYSGEAG 453 (459)
T ss_pred hcCCCCchhHHHHHHH-----HHH---hCCeEE----Ee-------------cccCCceEEEEEecccCccc
Confidence 4677789999876422 333 356544 22 01235899999866655543
No 118
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=71.58 E-value=5.6 Score=47.15 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=34.3
Q ss_pred cchHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--EEEEEECCccccccc
Q 000459 77 PGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD--LISVHNSGDGVPVEI 127 (1484)
Q Consensus 77 pGL~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 127 (1484)
-.||+++.|.|.|---++ -.+.|.|-+..+++ ..+|.|||+|.|+..
T Consensus 358 talyRv~QEaltNIErHa----~Atrv~ill~~~~d~vql~vrDnG~GF~~~~ 406 (459)
T COG4564 358 TALYRVVQEALTNIERHA----GATRVTILLQQMGDMVQLMVRDNGVGFSVKE 406 (459)
T ss_pred HHHHHHHHHHHHHHHhhc----CCeEEEEEeccCCcceEEEEecCCCCccchh
Confidence 478889999888855332 23667777765544 578999999999874
No 119
>PF14501 HATPase_c_5: GHKL domain
Probab=71.00 E-value=11 Score=37.07 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=47.7
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCCE--EEEEECCcccccccccCCCcccceEEeeeccccccCCCCcccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDL--ISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKT 156 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~gs--IsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~ 156 (1484)
|+.||--+|+||++++...+....|.|.+...++. |+|.|.-.. +. ..+. ..+.
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~---~~-------------~~~~--------~~~~ 61 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK---EI-------------EKLE--------SSSS 61 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC---cc-------------cccc--------cccc
Confidence 67899999999999887543256788888876664 566765322 10 0111 1245
Q ss_pred ccCccCcccceeeecccE
Q 000459 157 TGGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 157 sGGlhGvGasvvNAlS~~ 174 (1484)
.++.||+|++-+..+-+.
T Consensus 62 ~~~~~G~GL~~v~~i~~~ 79 (100)
T PF14501_consen 62 KKKGHGIGLKNVKKILEK 79 (100)
T ss_pred CCCCCCcCHHHHHHHHHH
Confidence 577899999988766543
No 120
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=60.60 E-value=12 Score=48.04 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=36.7
Q ss_pred chHhHHHHHHHHhhhhccc----CCCCCeEEEEEEccCC--EEEEEECCccccccc
Q 000459 78 GLYKIFDEILVNAADNKQR----DPKMDAVKVVIDQEHD--LISVHNSGDGVPVEI 127 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~----~~~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 127 (1484)
-|-+.|--+|-||.+.... .+....|.++++..+| .+.|.|||+|.|.+.
T Consensus 600 ~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~ 655 (712)
T COG5000 600 LLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPREN 655 (712)
T ss_pred HHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHH
Confidence 4557788889999875432 1233468888887666 478999999999986
No 121
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=59.39 E-value=12 Score=46.13 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=38.7
Q ss_pred hHhHHHHHHHHhhhhcccCCCCCeEEEEEEccCC---EEEEEECCccccccccc
Q 000459 79 LYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHD---LISVHNSGDGVPVEIHQ 129 (1484)
Q Consensus 79 L~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~g---sIsV~DnGrGIPvd~h~ 129 (1484)
+...+--+++||+|.+. .+...|+|+...+.+ .|-|.|||.|-|++..+
T Consensus 565 ieQVlvNl~~NaldA~~--h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~d 616 (673)
T COG4192 565 IEQVLVNLIVNALDAST--HFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVD 616 (673)
T ss_pred HHHHHHHHHHHHHhhhc--cCCceEEEEeecCcccceEEEEecCCCCCchhHHH
Confidence 45678889999999876 345789998876433 79999999999987654
No 122
>PF08070 DTHCT: DTHCT (NUC029) region; InterPro: IPR012542 The DTCHT region is the C-terminal part of DNA gyrases B / topoisomerase IV / HATPase proteins []. This region is composed of quite low complexity sequence.; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0005634 nucleus
Probab=58.69 E-value=17 Score=36.31 Aligned_cols=16 Identities=44% Similarity=1.020 Sum_probs=11.5
Q ss_pred CCCCCccccccccceee
Q 000459 1446 PPKARPQRANRRQARYV 1462 (1484)
Q Consensus 1446 ~~~~r~~r~~r~~~~y~ 1462 (1484)
++++|+-|| |+..+|.
T Consensus 80 apR~r~gRA-kKpVkYl 95 (96)
T PF08070_consen 80 APRARPGRA-KKPVKYL 95 (96)
T ss_pred CCcCCCccc-cCceecc
Confidence 668999998 4455575
No 123
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=55.84 E-value=9.8 Score=45.10 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=44.3
Q ss_pred chHhHHHHHHHHhhhhccc-CCCC--------CeEEEEEEccC----CEEEEEECCcccccccccCCCcccceEEeeecc
Q 000459 78 GLYKIFDEILVNAADNKQR-DPKM--------DAVKVVIDQEH----DLISVHNSGDGVPVEIHQEEGVYVPELIFGHLL 144 (1484)
Q Consensus 78 GL~ki~dEIL~Na~De~~~-~~~~--------~~I~V~i~~d~----gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~ 144 (1484)
-|.++|.-++-||+...-. +... ..+.++|+... -.+.|.|||+|||-+.-+ .+|--+-
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~--------~lF~P~V 312 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQD--------HLFYPMV 312 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhh--------hcccccc
Confidence 4668999999999964321 1111 23445554221 147899999999988643 2555554
Q ss_pred ccccCCCCccccccCccCcccceee
Q 000459 145 TSSNYDDNVKKTTGGRNGYGAKLTN 169 (1484)
Q Consensus 145 aGgkfdd~~yk~sGGlhGvGasvvN 169 (1484)
+|- + |--|+|++++.
T Consensus 313 s~r---------~-~GsGLGLala~ 327 (363)
T COG3852 313 SGR---------E-GGTGLGLALAQ 327 (363)
T ss_pred ccC---------C-CCccccHHHHH
Confidence 431 1 22577777653
No 124
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=55.21 E-value=17 Score=44.22 Aligned_cols=51 Identities=29% Similarity=0.462 Sum_probs=37.7
Q ss_pred cchHhHHHHHHHHhhhhccc----CCC-CCeEEEEEE--ccCCEEEEEECCccccccc
Q 000459 77 PGLYKIFDEILVNAADNKQR----DPK-MDAVKVVID--QEHDLISVHNSGDGVPVEI 127 (1484)
Q Consensus 77 pGL~ki~dEIL~Na~De~~~----~~~-~~~I~V~i~--~d~gsIsV~DnGrGIPvd~ 127 (1484)
+=|+|++.|++-||.-.-+. ++. -..|+|+|- .++-+|.|.|-|-|||-..
T Consensus 259 shL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~ 316 (414)
T KOG0787|consen 259 SHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRD 316 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhH
Confidence 46999999999999865442 222 345777765 3446899999999999764
No 125
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=51.57 E-value=12 Score=47.69 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhhcc--c-----CC----CCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeecccccc-C
Q 000459 82 IFDEILVNAADNKQ--R-----DP----KMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSN-Y 149 (1484)
Q Consensus 82 i~dEIL~Na~De~~--~-----~~----~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgk-f 149 (1484)
-++|+|.||-|..- | ++ .--.|+++-+.+++.++|.|.|-||.-.-- +.-+-|...+|+| |
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dL-------vnnLGTIAkSGtK~F 133 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDL-------VNNLGTIAKSGSKAF 133 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHH-------HhhhhhhhhcccHHH
Confidence 47899999998652 1 11 224577777788899999999988764321 1111122333332 1
Q ss_pred C-----CCccccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEe
Q 000459 150 D-----DNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFK 219 (1484)
Q Consensus 150 d-----d~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~ 219 (1484)
- ..+-..-.|+-|||.--+.....+..|.+....+. .|..++..| ..-.+..++.-.+||+|.-.
T Consensus 134 mealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~----gs~~v~~~~~~~rGTki~l~ 203 (656)
T KOG0019|consen 134 LEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGR----GSYEIAEASGLRTGTKIVIH 203 (656)
T ss_pred HHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCC----CceEEeeccCccccceEEee
Confidence 1 11222357999999999999999999998744433 444444332 12223333335689987654
No 126
>PLN03128 DNA topoisomerase 2; Provisional
Probab=48.25 E-value=14 Score=51.18 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCC--CCCCCC-ccHH
Q 000459 1024 QILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFT--PFPKNS-KSIE 1100 (1484)
Q Consensus 1024 eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~--~~~~~s-k~~~ 1100 (1484)
+.=.++|..|.++..++.++++.++++++++++..+.--. +|+++= ...-...+.+.....|. ...... ...+
T Consensus 986 ~~R~~~y~kRk~~~l~~~~~~~~~l~~k~~fi~~v~~~~~-~i~~~~---k~~~~~~L~~~~f~~~~~~~~~~~~~~~~~ 1061 (1135)
T PLN03128 986 HLRLDLYVKRKEVLLENLEYELKKLDNKARFILAVVKGEI-VVNNRK---RAELLAELEEKGFDKFPKTAKISETNVVGD 1061 (1135)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHhheecceE-EEcCCC---HHHHHHHHHHcCCCCcchhhhhcccccccc
Confidence 4556789999999999999999999999999998554322 332211 11111112222111111 101000 0111
Q ss_pred HHhhcCCccccccccCccc---------ccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHH
Q 000459 1101 AVVAGATDETEESEENPEV---------VNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWV 1171 (1484)
Q Consensus 1101 ~a~~~~~e~~e~~ee~~e~---------~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~ 1171 (1484)
+. ..+.++++++...... -..||.+.++.|+. +.+++++|+++++.--..-.|.+..+.+.
T Consensus 1062 ~~-~~~~~~~~~~~~~~~~~~~yLL~M~l~~LT~e~~~kL~~---------e~~~~~~ei~~l~~~t~~~~w~~DLd~~~ 1131 (1135)
T PLN03128 1062 RD-GEASEEEEASDNELAKSYDYLLGMPISSLTLEKVDELRA---------ERAKKETEVEELKKTTPEDLWRKDLDAFE 1131 (1135)
T ss_pred cc-ccccchhhhcccccccchHHHHhCHHHHhhHHHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1111111111111111 12378889999998 99999999999999888888888888877
Q ss_pred HHHH
Q 000459 1172 KDLD 1175 (1484)
Q Consensus 1172 ~DLd 1175 (1484)
+.|+
T Consensus 1132 ~~~~ 1135 (1135)
T PLN03128 1132 EALD 1135 (1135)
T ss_pred HhhC
Confidence 7663
No 127
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=42.15 E-value=43 Score=41.77 Aligned_cols=148 Identities=17% Similarity=0.221 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhhcc--c-----C----CC--CCeEEEEEEccCCEEEEEECCccccccc-ccCCC---cccceEEeeecc
Q 000459 82 IFDEILVNAADNKQ--R-----D----PK--MDAVKVVIDQEHDLISVHNSGDGVPVEI-HQEEG---VYVPELIFGHLL 144 (1484)
Q Consensus 82 i~dEIL~Na~De~~--~-----~----~~--~~~I~V~i~~d~gsIsV~DnGrGIPvd~-h~~~~---~~~~Elift~L~ 144 (1484)
.+.|+|.||.|..- | + +. --.|+|..+.++....|.|.|-|+.-+- ...-| .+.-.-.+..+.
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~ 178 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQ 178 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhh
Confidence 47899999998641 1 1 11 1347777777778999999999987432 11000 000000111122
Q ss_pred ccccCCCCccccccCccCcccceeeecccEEEEEEEecCCCeEEEEEEecC-CCCCCCCccccCCCCCcceEEEEecCcc
Q 000459 145 TSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNN-MGKKSEPNISKCKEGDNWTKVSFKPDLA 223 (1484)
Q Consensus 145 aGgkfdd~~yk~sGGlhGvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g-~~~~~~~~i~~~~~~~~GT~I~F~PD~~ 223 (1484)
..+.-.+. -.--.|+.|||.-.+=....+..|++.. .|...|..+-..| ..+...| -+.+-.+||.|+...--+
T Consensus 179 ~~~~~~~~-~~dlIGQFGVGFYsAfLVAD~vvVtsKh-NdD~QyiWESdan~FsvseDp---rg~tL~RGt~ItL~LkeE 253 (785)
T KOG0020|consen 179 DSGDSEGL-MNDLIGQFGVGFYSAFLVADRVVVTSKH-NDDSQYIWESDANSFSVSEDP---RGNTLGRGTEITLYLKEE 253 (785)
T ss_pred ccccchhh-HHHHHHhcchhhhhhhhhcceEEEEecc-CCccceeeeccCcceeeecCC---CCCcccCccEEEEEehhh
Confidence 22211111 1234688999998888888999998863 3334443322211 1111111 122346799999864322
Q ss_pred ccccCccCHHHHH
Q 000459 224 KFNMTHLEDDVVA 236 (1484)
Q Consensus 224 iF~~~~~~~d~l~ 236 (1484)
- .+-+..|++.
T Consensus 254 A--~dyLE~dtlk 264 (785)
T KOG0020|consen 254 A--GDYLEEDTLK 264 (785)
T ss_pred h--hhhcchhHHH
Confidence 1 1224556654
No 128
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=40.20 E-value=26 Score=46.55 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=31.6
Q ss_pred HHHHhhhhcccC-------C--CCCeEEEEEEccCC--EEEEEECCcccccccc
Q 000459 86 ILVNAADNKQRD-------P--KMDAVKVVIDQEHD--LISVHNSGDGVPVEIH 128 (1484)
Q Consensus 86 IL~Na~De~~~~-------~--~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~h 128 (1484)
+|-||+|+-+.. | ...+|.+.-...+| .|+|.|||+||..+..
T Consensus 440 LvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI 493 (716)
T COG0643 440 LVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKI 493 (716)
T ss_pred HHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHH
Confidence 467999987642 3 34667777666656 4899999999998763
No 129
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=39.22 E-value=2.1e+02 Score=39.07 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=13.3
Q ss_pred ccchhhhhh-cHhHHHHHHHhCCC
Q 000459 486 EASSNQVLN-NSEIGNIKKILGLK 508 (1484)
Q Consensus 486 ~a~~~~i~~-N~Ei~~i~~~lG~~ 508 (1484)
+..+.+|++ |+--...+.||||-
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhH
Confidence 344555553 55555666777764
No 130
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=37.07 E-value=11 Score=36.31 Aligned_cols=6 Identities=50% Similarity=0.899 Sum_probs=0.0
Q ss_pred CCcccc
Q 000459 1449 ARPQRA 1454 (1484)
Q Consensus 1449 ~r~~r~ 1454 (1484)
++++|.
T Consensus 21 ~~~~r~ 26 (81)
T PF14812_consen 21 KRPSRR 26 (81)
T ss_dssp ------
T ss_pred Cccccc
Confidence 333333
No 131
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.94 E-value=5.4e+02 Score=31.18 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHhh
Q 000459 1024 QILEEFFHIRLEFYEKRKKVQ---LENLELELLKLENKVRFIL 1063 (1484)
Q Consensus 1024 eIL~eF~~~Rle~y~kRk~~l---L~kl~~~l~~LenkvrFI~ 1063 (1484)
+-=..||++|.+.++-=++-+ +..|+.+...|.....-+.
T Consensus 134 ~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 134 EAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334579999999886544333 3344444455544444333
No 132
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=33.52 E-value=66 Score=40.50 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhcccCCC-CCeEEEEEEccCC--EEEEEECCcccccc
Q 000459 82 IFDEILVNAADNKQRDPK-MDAVKVVIDQEHD--LISVHNSGDGVPVE 126 (1484)
Q Consensus 82 i~dEIL~Na~De~~~~~~-~~~I~V~i~~d~g--sIsV~DnGrGIPvd 126 (1484)
++.=++.||+-+...... ...+.|.+..+++ .|.|+|||+||+-+
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 578889999988764321 2445565555444 58999999999975
No 133
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=29.24 E-value=32 Score=33.20 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=15.4
Q ss_pred eeeecCCcceeeee--ecCCC
Q 000459 854 TVLVNGSEGIGTGW--SSYIP 872 (1484)
Q Consensus 854 ~vLvNGa~GIatG~--sT~IP 872 (1484)
.+|+-|.+|||||. |-|||
T Consensus 27 vlliagisgiatgiivslnip 47 (113)
T PRK13711 27 VLLIAGISGIATGIIVSLNIP 47 (113)
T ss_pred EEEEeccccceeeEEEEecch
Confidence 47899999999996 55665
No 134
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=28.96 E-value=38 Score=27.91 Aligned_cols=22 Identities=45% Similarity=0.772 Sum_probs=13.8
Q ss_pred cchhhhHHHHHHHHHHhhhhhhcc
Q 000459 533 LAPLSFLLWFILIFAWITTFCFML 556 (1484)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1484)
|.-|||||+..+|..- .|||.|
T Consensus 11 lc~l~~llflv~imli--if~f~l 32 (43)
T PF11395_consen 11 LCFLSFLLFLVIIMLI--IFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHH
Confidence 4457777777666543 467765
No 135
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=27.35 E-value=5e+02 Score=32.71 Aligned_cols=100 Identities=24% Similarity=0.359 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCCccc
Q 000459 1031 HIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDET 1110 (1484)
Q Consensus 1031 ~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~ 1110 (1484)
+.=.+||..|.++...+.+.++..++.++..+..++ ++.+ +.+-|.++.. .+.+.
T Consensus 307 eIL~~f~~~R~~~~~kR~~~~l~kl~~~l~il~gl~----~~~~--~idfIi~vI~--------~s~~~----------- 361 (426)
T PF00521_consen 307 EILKEFYEFRLEYYQKRKQYLLEKLEERLHILEGLI----KALN--KIDFIIEVIR--------GSIDK----------- 361 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--THHHHHHHHH--------HSSSH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHH--HHHHHHHHHh--------ccccc-----------
Confidence 556789999999999999999999999999777442 1111 1233444422 11111
Q ss_pred cccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHhHH
Q 000459 1111 EESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKS 1187 (1484)
Q Consensus 1111 e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~~DLd~f~~~l~~~~~~ 1187 (1484)
......|.+++.+ ...+.|.+..-..|=.++.++|.+++++.+++
T Consensus 362 ------------------------------~~~k~~L~~~L~~--~q~~yLL~m~L~~LT~~e~~kL~~e~~~l~~e 406 (426)
T PF00521_consen 362 ------------------------------NKAKKDLIEELSE--EQADYLLSMPLRRLTKEEIEKLQKEIKELEKE 406 (426)
T ss_dssp ------------------------------HHHHHHHHHHHCH--HHHHHHHTSBGGGGSHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------hHHHHHHHhhchH--HHHHHHHhchHHHhhHHHHHHHHHHHHHHHHH
Confidence 1122333333222 66888999988888888999999888877764
No 136
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=26.60 E-value=2.4e+02 Score=35.83 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccHHH
Q 000459 1022 PEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEA 1101 (1484)
Q Consensus 1022 ~~eIL~eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~ 1101 (1484)
.-+.-.++|..|.++...+.+..+..++..+..+++....|..+... ..-|+.|+..+.+++|+.. ..+
T Consensus 324 f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~id~vi~~ir~s-----~~ak~~L~~~l~~~~~~~~------qa~ 392 (445)
T cd00187 324 FLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSS-----DEAKKALIEELEKLGFSEI------QAD 392 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHhcCCCHH------HHH
Confidence 34566678999999999999999999999999999988776654221 2237788888888887743 111
Q ss_pred HhhcCCccccccccCcccccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHH
Q 000459 1102 VVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEV 1158 (1484)
Q Consensus 1102 a~~~~~e~~e~~ee~~e~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei 1158 (1484)
+.-+ ..-..+|....+.|.. +.++|++|++++++-+
T Consensus 393 ~IL~------------m~L~~LT~~e~~kL~~---------E~~~l~~ei~~l~~~l 428 (445)
T cd00187 393 AILD------------MRLRRLTKLEREKLLK---------ELKELEAEIEDLEKIL 428 (445)
T ss_pred HHHH------------hHHHHhhhhHHHHHHH---------HHHHHHHHHHHHHHHh
Confidence 1110 0012355666666666 8999999999998877
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.20 E-value=1.1e+03 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHhhhe
Q 000459 1025 ILEEFFHIRLEFYEKRKKVQ---LENLELELLKLENKVRFILGV 1065 (1484)
Q Consensus 1025 IL~eF~~~Rle~y~kRk~~l---L~kl~~~l~~LenkvrFI~~V 1065 (1484)
-=..||++|.+..+-=++-+ +..|+.+...|....--+..+
T Consensus 130 ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~ 173 (312)
T smart00787 130 AKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSI 173 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999986554443 445666666676666655544
No 138
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=25.80 E-value=82 Score=40.94 Aligned_cols=79 Identities=19% Similarity=0.420 Sum_probs=53.7
Q ss_pred HhHHHHHHHHhhhhcccCCCCCeEEEEEEc--cCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccc
Q 000459 80 YKIFDEILVNAADNKQRDPKMDAVKVVIDQ--EHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTT 157 (1484)
Q Consensus 80 ~ki~dEIL~Na~De~~~~~~~~~I~V~i~~--d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~s 157 (1484)
-.++.-+|.||+--.. .....|.|.++. |.=+++|.|||-||.-.... .+. .+|-.||+-..|.
T Consensus 638 ~qv~~NLi~Naik~~~--~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~--riF---~iFqRl~s~~~y~------- 703 (750)
T COG4251 638 GQVFQNLIANAIKFGG--PENPDIEISAERQEDEWTFSVRDNGIGIDPAYFE--RIF---VIFQRLHSRDEYL------- 703 (750)
T ss_pred HHHHHHHHhhheecCC--CCCCceEEeeeccCCceEEEecCCCCCcCHHHHH--HHH---HHHHhcCchhhhc-------
Confidence 3677778888874322 223678888663 33479999999999866432 222 3788888877663
Q ss_pred cCccCcccceeeecccE
Q 000459 158 GGRNGYGAKLTNIFSTE 174 (1484)
Q Consensus 158 GGlhGvGasvvNAlS~~ 174 (1484)
| +|.|+.++-.+-+.
T Consensus 704 -g-tG~GL~I~kkI~e~ 718 (750)
T COG4251 704 -G-TGLGLAICKKIAER 718 (750)
T ss_pred -C-CCccHHHHHHHHHH
Confidence 3 89999988776553
No 139
>KOG3402 consensus Predicted membrane protein [Function unknown]
Probab=25.45 E-value=44 Score=32.73 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=17.9
Q ss_pred cchhhhHHHHHHHHHHhhhhh
Q 000459 533 LAPLSFLLWFILIFAWITTFC 553 (1484)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~ 553 (1484)
-....|+.|.|++-||+++|-
T Consensus 59 rSavGf~fw~ivLsaW~~~Fq 79 (101)
T KOG3402|consen 59 RSAVGFSFWTIVLSAWALTFQ 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999985
No 140
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=24.66 E-value=54 Score=31.06 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=7.6
Q ss_pred cccEEEeec
Q 000459 521 YGHLMIMTD 529 (1484)
Q Consensus 521 YgkiiImtD 529 (1484)
+.+|||++|
T Consensus 46 ~~~Vii~~D 54 (81)
T PF13662_consen 46 VKEVIIAFD 54 (81)
T ss_dssp -SEEEEEEE
T ss_pred CceEEEEeC
Confidence 478999999
No 141
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=24.60 E-value=1e+02 Score=39.08 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=33.2
Q ss_pred HhHHHHHHHHhhhhcccCCCCCeEEEEEEccCCEEEEEECCcccccccc
Q 000459 80 YKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIH 128 (1484)
Q Consensus 80 ~ki~dEIL~Na~De~~~~~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h 128 (1484)
..++.|+|.||+=+..-.-....|.|.+..| .|.|++.| |.|.++.
T Consensus 272 ~~alREai~NAv~HRDYs~~~~~v~I~iydD--RieI~NPG-gl~~gi~ 317 (467)
T COG2865 272 LEALREAIINAVIHRDYSIRGRNVHIEIYDD--RIEITNPG-GLPPGIT 317 (467)
T ss_pred HHHHHHHHHHHHHhhccccCCCceEEEEECC--eEEEECCC-CCCCCCC
Confidence 3689999999995532111223789999865 89999988 6776654
No 142
>PF09239 Topo-VIb_trans: Topoisomerase VI B subunit, transducer; InterPro: IPR015320 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents subunit B of topoisomerase VI, an ATP-dependent type IIB enzyme. Members of this family adopt a structure consisting of a four-stranded beta-sheet backed by three alpha-helices, the last of which is over 50 amino acids long and extends from the body of the protein by several turns. This domain has been proposed to mediate intersubunit communication by structurally transducing signals from the ATP binding and hydrolysis domains to the DNA binding and cleavage domains of the gyrase holoenzyme []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A 2Q2E_B.
Probab=24.11 E-value=6.4e+02 Score=27.71 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=50.9
Q ss_pred cceeeeecceEEEEEEecC-----CceeEEEEecccccC-CCcchhHhHHHHHHHHHHHHHHhccCCCCCChhhHhcceE
Q 000459 279 TRFHERVNERWEICVTLSE-----GQFQQVSFVNGIATI-KGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLW 352 (1484)
Q Consensus 279 ~~i~~~~~~~~EVAl~~s~-----~~~~~~SFVN~I~T~-~GGTHv~gf~~aLt~~i~~~~~kk~K~~~i~~~dIregL~ 352 (1484)
|.+|.+.---+|+|+.|-. +..+.+-|+|-|+.. +.|. .++|+++.+. +=++- .++..+ ..-+.
T Consensus 34 p~vy~G~PFiVEagiayGG~~~~~~~~~ilRfANRVPLly~~g~------cvit~av~~i-~W~~Y--~l~~~~-~~p~~ 103 (160)
T PF09239_consen 34 PSVYSGHPFIVEAGIAYGGEIPPEGKIEILRFANRVPLLYDQGS------CVITKAVKSI-NWKRY--GLDQPG-NGPLV 103 (160)
T ss_dssp -EEETTEEEEEEEEEEESTTS-SCSS-EEEEEETTEEE-STGCC------SHHHHHHHHS--GCCC--T--SSS--CSEE
T ss_pred CceecCCCEEEEEehhhccCCCCCCCceEEEEccCCceeecCCc------hHHHHHHHhC-Cchhc--CcCCCC-CCCEE
Confidence 4444433335799999952 235789999999863 4444 5677776632 21211 122222 45678
Q ss_pred EEEEEeecCCccCCccccccc
Q 000459 353 VFVNALIDNPAFDSQTKETLT 373 (1484)
Q Consensus 353 ~vVsvki~nP~FegQTKekL~ 373 (1484)
+|||+-..+--|.|-.|+.+.
T Consensus 104 v~Vhi~ST~VPfts~~KeaIa 124 (160)
T PF09239_consen 104 VFVHIASTKVPFTSEGKEAIA 124 (160)
T ss_dssp EEEEEEESS--BSSTTSSSB-
T ss_pred EEEEEeecccCccccchhhhc
Confidence 999999999999999999987
No 143
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=23.73 E-value=7.3e+02 Score=34.07 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000459 1036 FYEKRKKVQLENLELELLKLENKVRF 1061 (1484)
Q Consensus 1036 ~y~kRk~~lL~kl~~~l~~LenkvrF 1061 (1484)
+...|++.+..+++.++..++.++++
T Consensus 337 ~~~~r~~vl~rr~~~~l~k~~er~hi 362 (869)
T PRK12758 337 STDHTVSLLKQELEIRLSELEEQWHF 362 (869)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455555555555555555555554
No 144
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.37 E-value=2.1e+02 Score=28.51 Aligned_cols=55 Identities=25% Similarity=0.315 Sum_probs=45.6
Q ss_pred CChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHhH
Q 000459 1123 VQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDK 1186 (1484)
Q Consensus 1123 lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~~DLd~f~~~l~~~~~ 1186 (1484)
....+++.+-. ++.+|..+.+.|+..+..+..-.-..|..+||..|+..++.-..
T Consensus 9 ~~~~~~e~~~~---------e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~ 63 (100)
T PF01486_consen 9 LWDSQHEELQQ---------EIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALK 63 (100)
T ss_pred CCHHHHHHHHH---------HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHH
Confidence 34566777776 88999999999998888888888889999999999999866554
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.70 E-value=1.4e+03 Score=30.99 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHhH
Q 000459 1166 PESLWVKDLDALDMQLDELDK 1186 (1484)
Q Consensus 1166 ~~dLW~~DLd~f~~~l~~~~~ 1186 (1484)
.+.-|.++|+.+..+++.+..
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~ 653 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKA 653 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999866554
No 146
>PRK04017 hypothetical protein; Provisional
Probab=21.23 E-value=23 Score=37.38 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=25.0
Q ss_pred ccccEEEeecccccchhhhHHHHHHHHHHhhhhhhcccCCCCCCchhhHHHHHHHh
Q 000459 520 RYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHS 575 (1484)
Q Consensus 520 RYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~ 575 (1484)
.+..|||+|| .|.=|..|+..|..+|..
T Consensus 64 ~~r~VIILTD----------------------------~D~~GekIr~~l~~~l~~ 91 (132)
T PRK04017 64 RGKEVIILTD----------------------------FDRKGEELAKKLSEYLQG 91 (132)
T ss_pred cCCeEEEEEC----------------------------CCcchHHHHHHHHHHHHh
Confidence 4678999999 999999999999988864
No 147
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=20.96 E-value=91 Score=28.86 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=26.8
Q ss_pred eEEecCCCCCChhhHHHHhhcc--CccccceEEcCch
Q 000459 629 IKYYKGLGTSTSKEGKEYFQNI--TLHKKDFVWEDDQ 663 (1484)
Q Consensus 629 ik~~KGLG~~~~~~~~e~~~~~--~~~~~~~~~~~~~ 663 (1484)
--+..|+.+|++++.+.||..- ........|+||.
T Consensus 7 avhirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdDt 43 (62)
T PF10309_consen 7 AVHIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDDT 43 (62)
T ss_pred eEEEEcCCCCCHHHHHHHHHHhcccCCCceEEEecCC
Confidence 4468999999999999999876 2234467788764
Done!