Query 000459
Match_columns 1484
No_of_seqs 357 out of 3272
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 21:17:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000459.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_9-12//hhsearch_pdb/000459hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 1.0 1 1 2737.6 87.9 1132 22-1190 3-1175(1177)
2 3l4j_A DNA topoisomerase 2; to 1.0 1 1 1837.2 53.6 733 424-1190 1-755 (757)
3 3qx3_A DNA topoisomerase 2-bet 1.0 1 1 1835.7 43.5 742 416-1192 23-784 (803)
4 2xkj_E Topoisomerase IV; type 1.0 1 1 1604.7 44.7 694 401-1181 2-740 (767)
5 2xcs_B DNA gyrase subunit B, D 1.0 1 1 1528.5 41.5 637 428-1180 5-680 (692)
6 2inr_A DNA topoisomerase 4 sub 1.0 1 1 1016.7 24.0 445 696-1182 27-499 (514)
7 2nov_A DNA topoisomerase 4 sub 1.0 1 1 1014.6 25.6 445 696-1182 3-475 (496)
8 3ilw_A DNA gyrase subunit A; D 1.0 1 1 961.5 24.6 425 714-1181 2-460 (470)
9 3lpx_A GYRA, DNA gyrase, A sub 1.0 1 1 952.2 30.4 420 719-1170 1-469 (500)
10 1zvu_A Topoisomerase IV subuni 1.0 1 1 930.5 30.9 407 718-1170 1-432 (716)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=2737.58 Aligned_cols=1132 Identities=50% Similarity=0.861 Sum_probs=1057.9
Q ss_pred CCCCCCCHHHCCCCCCHHHHCCCCCEEECCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98887101020147711322088821425455532688972465304410003465147699999988542003699997
Q 000459 22 APNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMD 101 (1484)
Q Consensus 22 ~~~~~~~~~yq~L~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~v~~vpGL~kiidEIl~Na~De~~~~~~~~ 101 (1484)
...++++++||+|+||||||+|||||||||++.+++||||+++.++|++++|+|+||||||||||||||+||+++++.|+
T Consensus 3 ~~~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~ 82 (1177)
T 4gfh_A 3 TEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMK 82 (1177)
T ss_dssp ----CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHCCCCC
T ss_conf 89874353152333212431399983146788886114430233310024344666112576379997174774178998
Q ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEE
Q ss_conf 38999983599899997996433431367882132687552245556789843112686675660000004578999995
Q 000459 102 AVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETAD 181 (1484)
Q Consensus 102 ~I~V~i~~d~g~IsV~DnGrGIPv~~h~~~g~~~pElift~L~aGgkfdd~~~k~sGGlnGvGasvvNalS~~f~Vev~d 181 (1484)
.|+|+||.++|+|+|+||||||||++||++|+|+||+|||+||||||||+++|++||||||||+|||||||++|.|+|++
T Consensus 83 ~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 83 RIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETAD 162 (1177)
T ss_dssp EEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEEEE
T ss_conf 69999987899899995587322240578898726314126124267589988283659875162785437820899999
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 37883999999648888887831148788854099996085633557547899999999999851124873599967742
Q 000459 182 GKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHR 261 (1484)
Q Consensus 182 ~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~VtF~PD~~iF~~~~~~~d~l~ll~kRl~dlA~~Ln~gl~I~lnder 261 (1484)
+|+|+.|+|+|++|+++...++++.++.+.+||+|+||||+++|++..|++++++.+.+|+++|++++ +++.+.+||++
T Consensus 163 ~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~~~l~~~~-~~~~~~~~g~~ 241 (1177)
T 4gfh_A 163 LNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSV-RDINVYLNGKS 241 (1177)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHHHHHHHHS-SSCEEEESSCB
T ss_pred ECCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEECHHHCCCCEECHHHHHHHHHHHHHHCCCC-CEEEEEECCCE
T ss_conf 71998999999899405888752057889996499999587764983717999999999999865998-25899926974
Q ss_pred CCCCCHHHHHHHCCCC-------------------CCCEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 5901099998622999-------------------741354326648999996389316888765611489960467699
Q 000459 262 VPVKSFAEYVDMYPKS-------------------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVA 322 (1484)
Q Consensus 262 ~~~kgf~dYv~~~~~~-------------------~~~i~~~~~~~veVa~~~s~~~~~~~SFVN~I~T~~GGTHv~gi~ 322 (1484)
..+..|.+|+.+|... ..++++..+.+|||||+|++++++++||||+|+|++||||++||+
T Consensus 242 ~~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~d~~~~~~SFvN~I~T~~GGTHv~gfr 321 (1177)
T 4gfh_A 242 LKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYIT 321 (1177)
T ss_dssp CCCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEECSSSCEEEEEESSCEETTEEHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHH
T ss_conf 67763242144444321143010255666556787638887505468772002577520336232564688862889999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999830478998956582151799997205986677531112454333221220397999968763999999
Q 000459 323 NQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVET 402 (1484)
Q Consensus 323 ~al~~~i~~~~~kk~K~~~i~~~dIregL~~vVsvkI~nP~FegQTKekLts~~~~~~~~~~l~~~fl~~~~~k~~Ii~~ 402 (1484)
++|+++|++|+.+++ +.+++++|||+||++||||+|+||+|+||||++|+|++..|++.+.+...|+..+ .++.++++
T Consensus 322 ~altr~in~~~~k~~-~~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 399 (1177)
T 4gfh_A 322 DQIVKKISEILKKKK-KKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKI-MKTDLATR 399 (1177)
T ss_dssp HHHHHHHHHHHHHHS-SSCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHH-TTSHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCCCHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCCHHCCEEECCCHHHHHHHH-HHHHHHHH
T ss_conf 999999999865413-3668899985885188886310676554025565470110300002308775224-35899999
Q ss_pred HHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCCH
Q ss_conf 99986421178852046987776899986524543699899993799831663567877024434674036312676440
Q 000459 403 LLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLL 482 (1484)
Q Consensus 403 il~~a~~r~~~~~kk~~~~kk~~l~gipKL~Da~~ag~k~~~~~eLfL~EGDSA~g~ak~g~~~~~r~~q~v~PLrGK~L 482 (1484)
++.+|++++++.+++..+++++++.++|||+||+.+|++++++|||||||||||+|||++||+++||+||||||||||||
T Consensus 400 ~~~~a~~~~~~~~~k~~~~~k~~~~~~~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiL 479 (1177)
T 4gfh_A 400 MFEIADANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKML 479 (1177)
T ss_dssp HHHHHTTCC------------CCCCSCTTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCEEECCCCCEEC
T ss_conf 99998888999987653201001115312334411389983232899856876056676255656866077435576222
Q ss_pred HHHCCCHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 02113456662207488999986888887657622356522999514211100245799999887765432012479999
Q 000459 483 NVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDG 562 (1484)
Q Consensus 483 Nv~~a~~~~i~~N~Ei~~i~~~lGl~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DG 562 (1484)
||++|+.++|++|+||++|++||||++|.+|+|+++||||||||||| |||||
T Consensus 480 Nv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTD----------------------------ADvDG 531 (1177)
T 4gfh_A 480 NVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTD----------------------------QDHDG 531 (1177)
T ss_dssp CCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECC----------------------------SSHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC----------------------------CCCCC
T ss_conf 05421788875048889889871788686667654687784899535----------------------------88884
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEC--CCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCH
Q ss_conf 8314679999996314111259789994044137872--58707997080359999998089998632488447987871
Q 000459 563 SHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATN--KNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTS 640 (1484)
Q Consensus 563 sHI~~Lll~ff~~~~p~Li~~~g~i~~~~tPl~k~~~--kg~~~~~fys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~ 640 (1484)
+||++|||||||+|||+||+.+||||+|+||||||+. +++..+|||+++|+|+|++..+.. .+|+||||||||||+|
T Consensus 532 sHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~-~~~~iqryKGLGEm~~ 610 (1177)
T 4gfh_A 532 SHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHK-FTWKQKYYKGLGTSLA 610 (1177)
T ss_dssp HHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGG-SCEEEEEC----CCCH
T ss_pred CHHHHHHHHHHHHHCHHHEEECCEEEEEECCEEEEEEECCCCCEEEEECHHHHHHHHHHHCCC-CCCCEEECCCCCCCCH
T ss_conf 168999999998707544844889999964648999734876158985648999999973578-8763012466774359
Q ss_pred HHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 66899852047521013883700199999985012368999865103899766556531353899999999999974206
Q 000459 641 KEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQR 720 (1484)
Q Consensus 641 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~rk~~~~~~~~~~~ld~~~~~~~~~~fi~~e~i~ys~~~~~R 720 (1484)
+|+|||||+|++|.+.|++++++|++.++++|+++++++||+||++|.|++++|++..+++|+|||+++|++||||||.|
T Consensus 611 ~ql~Ett~~~d~~~~~~~~v~~~d~~~~d~~f~~~~~~~RkewI~~~~~~~~~d~~~~~~~~~d~~~~~~~~ys~~~~~R 690 (1177)
T 4gfh_A 611 QEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIR 690 (1177)
T ss_dssp HHHHHHHHTCTTTEEEEECCCTTTHHHHHHHHCGGGHHHHHHHHHHCCTTCCCCSSCSEEEHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999971814046999971663299999987046606589999865745543222334427999976444663551552
Q ss_pred CCCCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66732238877630002443108999996167750100222357779651999999841155457752210257787678
Q 000459 721 SIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTR 800 (1484)
Q Consensus 721 aIP~~~DGLKP~QRkIL~~~~k~~~~~~~KvA~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr 800 (1484)
||||++||||||||||||+||++++++++||+|++|+|+++++|||||+|||+|||+|||+||||||||||+||||||||
T Consensus 691 aiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~V~~~~~yhHGd~s~~~tiv~mAQ~f~gs~~~~Ll~~~GnFGsr 770 (1177)
T 4gfh_A 691 SIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTR 770 (1177)
T ss_dssp HSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTTCCSCHHHHHHHHHHHHCCSTTSCTTCSBCCBSCCCCT
T ss_pred CCCHHHHHCCCCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 18314430584411676402221147775389988888764236777403788999998777762763357746887866
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHH
Q ss_conf 88998766535111214577863089899576655478997357643489775663028864021120589999979899
Q 000459 801 NQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880 (1484)
Q Consensus 801 ~~gG~~aAa~RYi~~rLs~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~sT~IP~hNp~eVi 880 (1484)
++||++|||||||||||+++++.||+++|+++|+|+++||+.+||+||||+|||||||||+|||||||||||||||.|||
T Consensus 771 ~~~g~~~Aa~RYte~rl~~~a~~l~~~~d~~~v~~~~~d~~~~EP~~~~p~iP~lLvNGs~GIavGmaT~IPphN~~Evi 850 (1177)
T 4gfh_A 771 ATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEII 850 (1177)
T ss_dssp TTTTTTCCCTTTCEECBCTTHHHHSCGGGTTTSCEEEETTEEEEESCCCCSSCSTTTTCEEEECSSCEEEECCBCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 77898655610255568899998554211560037589987148651354222533017776545400047779999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHC--C-
Q ss_conf 9999987399988997622588708998135788619999999999807069998238878878999999999812--8-
Q 000459 881 ANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQ--N- 957 (1484)
Q Consensus 881 ~a~~~~L~~~~~~p~~P~~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~~l~~~--~- 957 (1484)
+|++++|+|+++.+|.|||+||+|.|+.+.+ | +|+++|+++..++++|+||||||++|+++|+|+|+.++.+ +
T Consensus 851 ~~~~~li~~~~~~~l~P~~~g~~G~i~~~~~-g---r~~~~g~~e~~~~~~i~ITELP~~v~~~~~~e~i~~~~~~~~K~ 926 (1177)
T 4gfh_A 851 KNIRHLMNDEELEQMHPWFRGWTGTIEEIEP-L---RYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKI 926 (1177)
T ss_dssp HHHHHHHTTCCCCCCCBCCTTCCCEEEECST-T---CEEEECEEEEEETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHCCCCHHHCCCCCCCCCCCEEEECC-C---EEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999973699889818889999974476048-4---89999999993897799995785054899999999986404686
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 85433012125887139999927402478899999867056120025507897489962000698999999999999999
Q 000459 958 DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFY 1037 (1484)
Q Consensus 958 ~~~I~d~~d~s~~~~v~i~I~lk~~~~~~~~~~~L~k~tkL~ssis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~y 1037 (1484)
.++|+|++|+|+ ++|||+|+|+++.+++.++++||++|+|+++|+++||++||++|++|+|+++++||++|++||+++|
T Consensus 927 ~~~I~d~~d~sd-~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~~Nm~~~d~~g~i~k~~~l~eiL~~f~~~R~e~~ 1005 (1177)
T 4gfh_A 927 KPWIKDMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYY 1005 (1177)
T ss_dssp CCCCSEEEECCS-SSCCEEEECCHHHHHHHHHHCHHHHTTCEEEECCSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEECHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 664236131289-9617999987885579999758986668415520589999289973686999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHH-----HHHHCC-----C
Q ss_conf 999999999999999999867877531031436761654379999999739998988985378-----874067-----8
Q 000459 1038 EKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIE-----AVVAGA-----T 1107 (1484)
Q Consensus 1038 ~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i~~k~k~elv~eL~~~gF~~~~~~sk~~~-----~a~~~~-----~ 1107 (1484)
+||++|++++++.+++++++++|||.++|+++|.|.++++++++.+|++.+|+++++.+.... ...... .
T Consensus 1006 ~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i~~~~~devI~~Lr~~~~~~~ak~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1177)
T 4gfh_A 1006 QKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGA 1085 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCCEECSSSCEECCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999999998999998754074787068889999999977995100344321013113454443210001
Q ss_pred ----CC---CCCCCCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf ----63---31123695323698945099987073323679999999999999999999998159056899999999999
Q 000459 1108 ----DE---TEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQ 1180 (1484)
Q Consensus 1108 ----e~---~~~~ee~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~L~~~t~~dLW~~DLd~l~~e 1180 (1484)
++ ..++.+.....+.++..||+|||+||||+||.+++++|++|++++++|++.|+++++++||++||++|+++
T Consensus 1086 ~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~MrL~~LT~ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~ 1165 (1177)
T 4gfh_A 1086 TSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 1165 (1177)
T ss_dssp ---------------------CTTTCBTHHHHSSBGGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 12211111110001222012223512065886086878779999999999999999999997789999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9898589999
Q 000459 1181 LDELDKSDAR 1190 (1484)
Q Consensus 1181 l~~~~~~~~~ 1190 (1484)
|+++++++.+
T Consensus 1166 ~~~~~~~~~e 1175 (1177)
T 4gfh_A 1166 YQEFLQRDAE 1175 (1177)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999987641
No 2
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=1.00 E-value=1 Score=1837.19 Aligned_cols=733 Identities=50% Similarity=0.847 Sum_probs=686.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHCCCHHHHHHCHHHHHHHH
Q ss_conf 76899986524543699899993799831663567877024434674036312676440021134566622074889999
Q 000459 424 EDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKK 503 (1484)
Q Consensus 424 ~~l~gipKL~Da~~ag~k~~~~~eLfL~EGDSA~g~ak~g~~~~~r~~q~v~PLrGK~LNv~~a~~~~i~~N~Ei~~i~~ 503 (1484)
+++.|+|||+|||.||++++++|||||||||||||||+|||+++||+||||||||||||||++|+.++|++|+||++|++
T Consensus 1 ~ri~g~~KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~ 80 (757)
T 3l4j_A 1 SRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKK 80 (757)
T ss_dssp CCCCSCSSCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCHHHHHHHH
T ss_conf 97678867200144567881124799851554221576310224865314456577413063064777642888899999
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 86888887657622356522999514211100245799999887765432012479999831467999999631411125
Q 000459 504 ILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKI 583 (1484)
Q Consensus 504 ~lGl~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~ 583 (1484)
||||++|.+|+++++||||||||||| |||||+||++|||||||+|||+||++
T Consensus 81 alG~~~g~~~~~~~~lRY~kiiImtD----------------------------aD~DG~HI~~Llltff~r~~p~Li~~ 132 (757)
T 3l4j_A 81 IMGLQHRKKYEDTKSLRYGHLMIMTD----------------------------QDHDGSHIKGLIINFLESSFPGLLDI 132 (757)
T ss_dssp HTTCCCSSCCCCGGGSSCSEEEEECC----------------------------SSHHHHHHHHHHHHHHHHHSTTSTTS
T ss_pred HHCCCCCCCCCCCCCCCCCEEEEECC----------------------------CCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 85778686656532467545898317----------------------------66441212448999999973998244
Q ss_pred CCEEEEEECCEEEEEC--CCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 9789994044137872--58707997080359999998089998632488447987871668998520475210138837
Q 000459 584 PSFLVEFITPIVKATN--KNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWED 661 (1484)
Q Consensus 584 ~g~i~~~~tPl~k~~~--kg~~~~~fys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~~~ 661 (1484)
+||||+|+||||||+. +|++++|||+++||++|++.++++ ++|+||||||||||+|+|+||||+++++|.+.|+|++
T Consensus 133 ~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~~E~~~~~~~~~~~-~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~ 211 (757)
T 3l4j_A 133 QGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHK-FTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQ 211 (757)
T ss_dssp TTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGG-SCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCC
T ss_pred CCEEEEECCCEEEEEECCCCCCEEEECCHHHHHHHHHHHCCC-CCCCCCEECCCCCCCHHHHHHHHCCCCCEEEEEEECC
T ss_conf 887998048658986046786038964878999999973567-8886524367576999999999648571058998458
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHH
Q ss_conf 00199999985012368999865103899766556531353899999999999974206667322388776300024431
Q 000459 662 DQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSF 741 (1484)
Q Consensus 662 ~~~~~~~~~~f~~~~~~~rk~~~~~~~~~~~ld~~~~~~~~~~fi~~e~i~ys~~~~~RaIP~~~DGLKP~QRkIL~~~~ 741 (1484)
++|.+.++++|+++++++||+||.+|.|++|||+++.+++|++||+++|+.|||+++.|||||++||||||||||||+|+
T Consensus 212 ~~d~~~~d~~f~~~~~~~Rk~wi~~~~~~~~ld~~~~~~~~~~~~~~~~i~ysm~~~~RAlPdv~DGLKPvqRrILyam~ 291 (757)
T 3l4j_A 212 GNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCF 291 (757)
T ss_dssp TTHHHHHHHHHCTTCHHHHHHHHHHCCTTCCCCSSCSEECHHHHHHHTHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHEEEEHHHH
T ss_conf 02799999984767623899999864986522464015338999878877875654432476143068750103105366
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 08999996167750100222357779651999999841155457752210257787678889987665351112145778
Q 000459 742 KRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPIT 821 (1484)
Q Consensus 742 k~~~~~~~KvA~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~~aAa~RYi~~rLs~~~ 821 (1484)
++++++++||||+||+|++|++|||||+|+|+|||+|||+|+||||+|||+||||||||++||++||||||||||||+++
T Consensus 292 ~~~~~~~~K~A~ivG~V~~~~~YHHGD~siydaiVrmAQ~f~gS~~~pLldgqGNFGS~~~~gd~aAA~RYte~rLs~~a 371 (757)
T 3l4j_A 292 KKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLT 371 (757)
T ss_dssp HTTTTSCEEHHHHHHHHHHHTTCCSCHHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTH
T ss_pred HHCCCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCHHHHCHHHHH
T ss_conf 40887676315651645210125778067999999986331222253212168877786879996655012551331889
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 63089899576655478997357643489775663028864021120589999979899999998739998899762258
Q 000459 822 RFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRG 901 (1484)
Q Consensus 822 ~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~sT~IP~hNp~eVi~a~~~~L~~~~~~p~~P~~~G 901 (1484)
+.||+++|+++|+|++|||+.+||+||||+|||||||||+|||||||||||||||.|||+|++++|+|+++.+|.|||+|
T Consensus 372 ~~l~~d~d~~~vdf~~~Dg~~~EP~vlp~~iP~lLvNGs~GIavGmATnIPphNl~Evi~a~~~~i~~~~~~~l~p~~~G 451 (757)
T 3l4j_A 372 RKIFHPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRG 451 (757)
T ss_dssp HHHSCGGGGGGSCEEECSSSEEEESCCCCSSCHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCCCCCCCCCTT
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 99734346574457288998117762466550666457760573120578998999999999999669975662444208
Q ss_pred CCCEEEECCCCCCCEEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHH--CC-CCCCCCCCCCCCCCCEEEEEE
Q ss_conf 870899813578861999999999980706999823887887899999999981--28-854330121258871399999
Q 000459 902 FGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIID--QN-DSFIRGFRQYSDDTTVDFEVF 978 (1484)
Q Consensus 902 f~G~I~~~~~~g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~~l~~--~~-~~~I~d~~d~s~~~~v~i~I~ 978 (1484)
|.|.|+.+ |+| +|++||+|+..++++|+||||||++|+++|+++|++++. .+ .++|+||+|+|++ +|||+|+
T Consensus 452 ~~G~i~~~---g~G-~~~~rg~~e~~~~~~IvITElPy~v~~~~lie~I~~lv~~~~K~~~~I~dirDesd~-gvrivI~ 526 (757)
T 3l4j_A 452 WTGTIEEI---EPL-RYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDD-NIKFIIT 526 (757)
T ss_dssp CCSEEEEE---ETT-EEEEECEEEEEETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSS-SCCEEEE
T ss_pred CCCEEEEC---CCC-EEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHCCCC-CEEEEEE
T ss_conf 98549854---894-799999999827976999957986679999999999985045777555012235899-4799999
Q ss_pred ECCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27402478899999867056120025507897489962000698999999999999999999999999999999999867
Q 000459 979 LSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENK 1058 (1484)
Q Consensus 979 lk~~~~~~~~~~~L~k~tkL~ssis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~Lenk 1058 (1484)
|+++.++++++++||++|+||++|+++||++||++|++++|+++++||++|++||+++|+||++|++++++.++++|+|+
T Consensus 527 lk~~~~~~~~l~~L~k~t~Lq~sf~~~nm~l~d~~g~~~~~~~l~eiL~~f~~~R~ev~~rR~~~~l~k~~~~l~~l~nk 606 (757)
T 3l4j_A 527 LSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQ 606 (757)
T ss_dssp CCHHHHHHHHHHCHHHHTTCEEEEECSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66886568899999985387477555149998688973401899999999999999999999999999999999999999
Q ss_pred HHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHH-----HHCCCCCCCCCCCCC--C----------CCC
Q ss_conf 87753103143676165437999999973999898898537887-----406786331123695--3----------236
Q 000459 1059 VRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAV-----VAGATDETEESEENP--E----------VVN 1121 (1484)
Q Consensus 1059 irFI~~Vi~~~I~i~~k~k~elv~eL~~~gF~~~~~~sk~~~~a-----~~~~~e~~~~~ee~~--~----------~~~ 1121 (1484)
++||++||+|+|+|+|++|++++.+|+++||++|++..+..... .....++.++++++. . ..-
T Consensus 607 ~rFI~~vi~g~l~i~nkkk~~li~eL~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (757)
T 3l4j_A 607 VKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGP 686 (757)
T ss_dssp HHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCCEECSSCCEECCC------------------------------------
T ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999997481487477689999999975998786200000023331001233321000000012211122332224575
Q ss_pred CCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989450999870733236799999999999999999999981590568999999999999898589999
Q 000459 1122 GVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDAR 1190 (1484)
Q Consensus 1122 ~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~L~~~t~~dLW~~DLd~l~~el~~~~~~~~~ 1190 (1484)
.....+|||||+||||+||.|++++|++|++++++|++.|+++||++||++||++|+++|+++++.|.+
T Consensus 687 ~~~~~~ydYLL~M~i~sLT~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~~~~~~~~~ 755 (757)
T 3l4j_A 687 EELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 755 (757)
T ss_dssp CTTTCBSHHHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 556675578857912104899999999999999999999976998999999999999999999876664
No 3
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=1.00 E-value=1 Score=1835.70 Aligned_cols=742 Identities=52% Similarity=0.885 Sum_probs=689.4
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHCCCHHHHHHC
Q ss_conf 20469877768999865245436998999937998316635678770244346740363126764400211345666220
Q 000459 416 KKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNN 495 (1484)
Q Consensus 416 kk~~~~kk~~l~gipKL~Da~~ag~k~~~~~eLfL~EGDSA~g~ak~g~~~~~r~~q~v~PLrGK~LNv~~a~~~~i~~N 495 (1484)
++.+++|++++.|+|||+|||.+|++++++|||||||||||||+|++|+++++|++|||||||||||||++|+.++|++|
T Consensus 23 ~~~~g~k~~r~~~lpKL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr~ailPLRGKiLNv~ka~~~ki~~N 102 (803)
T 3qx3_A 23 TSVDSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMEN 102 (803)
T ss_dssp -----------CCCTTCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTTEEEEEECSSCCCCTTCCHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCCHHHHHCCCCEECCCCCCCCCCCCCCHHHHHCCHHHHHCC
T ss_conf 44787541235789762012113667810217999527761334433420112454541114673210531438777417
Q ss_pred HHHHHHHHHHCCCCCCCC---CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 748899998688888765---76223565229995142111002457999998877654320124799998314679999
Q 000459 496 SEIGNIKKILGLKQGVEY---NNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINF 572 (1484)
Q Consensus 496 ~Ei~~i~~~lGl~~~~~~---~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~f 572 (1484)
+||++|++||||++|.+| +++++||||||||||| |||||+||++|||||
T Consensus 103 ~Ei~~ii~alG~g~g~~~~~~~d~~~LRY~kIiIMTD----------------------------ADvDGsHI~~LLltf 154 (803)
T 3qx3_A 103 AEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTD----------------------------QDQDGSHIKGLLINF 154 (803)
T ss_dssp HHHHHHHHHHTCCTTCCCCSTTGGGGCSCSEEEEECC----------------------------SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC----------------------------CCCCCCCCHHHHHHH
T ss_conf 8788999985778676566544410035544898427----------------------------776611004579999
Q ss_pred HHHHHHHHHCCCCEEEEEECCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 99631411125978999404413787258707997080359999998089998632488447987871668998520475
Q 000459 573 IHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITL 652 (1484)
Q Consensus 573 f~~~~p~Li~~~g~i~~~~tPl~k~~~kg~~~~~fys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~ 652 (1484)
||+|||+||+. ||||+|+||||||+ +|+++.|||+++||++|++.+++ .++|+||||||||||+|+|+||||||++.
T Consensus 155 f~r~~p~Li~~-G~vyia~pPL~kv~-~gk~~~~~ys~~e~~~~~~~~~~-~~~~~iqryKGLGem~~~el~ettmd~~~ 231 (803)
T 3qx3_A 155 IHHNWPSLLKH-GFLEEFITPIVKAS-KNKQELSFYSIPEFDEWKKHIEN-QKAWKIKYYKGLGTSTAKEAKEYFADMER 231 (803)
T ss_dssp HHHHCGGGGGT-TCEEEECC------------------------------------------------CHHHHHHHTHHH
T ss_pred HHHHHHHHHHC-CEEEEECCCEEEEE-CCCEEEEEECHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 99875998856-80797047458874-18706999667889999998436-88755213566687898999999639653
Q ss_pred CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 210138837001999999850123689998651038-----------99766-556531353899999999999974206
Q 000459 653 HKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFE-----------PGNHL-DQKEKYIKYSDFVNKELILFSMADLQR 720 (1484)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~f~~~~~~~rk~~~~~~~-----------~~~~l-d~~~~~~~~~~fi~~e~i~ys~~~~~R 720 (1484)
|++.|.|..++|.++++++|+++++++||+||.+|. |++|| |++++.++|+||||+|||+|||+|+.|
T Consensus 232 ~r~~~~~~~~~d~~~~d~~F~k~~~~~RK~wi~~~~~~~~~~~~~~~p~~~l~d~~~~~i~y~dFInkELi~FS~adn~R 311 (803)
T 3qx3_A 232 HRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNER 311 (803)
T ss_dssp HEEEEECCSHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCC----------CEEEHHHHHHHTHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCC
T ss_conf 16988847844399999986579758999999985032000001488764135676416638985528999987775405
Q ss_pred CCCCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66732238877630002443108999996167750100222357779651999999841155457752210257787678
Q 000459 721 SIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTR 800 (1484)
Q Consensus 721 aIP~~~DGLKP~QRkIL~~~~k~~~~~~~KvA~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr 800 (1484)
||||++||||||||||||+|++++.++++||||+||+|+++++|||||+|+|+|||+|||+|+||||+|||+|+||||||
T Consensus 312 aiP~v~DGLKPvqRriLy~m~~~~~~~~~K~A~~vG~vse~~~YHHGd~siy~aiV~mAQ~f~GS~~~~Ll~~~GnFGsr 391 (803)
T 3qx3_A 312 SIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 391 (803)
T ss_dssp HSCBTTTSCCHHHHHHHHHHHHHCCSSCEEHHHHHHHHHHHHTCCSCHHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCT
T ss_pred CCCCHHHCCCCCCCEEEHHHHCCCCCCCEEEEEEEEEHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCC
T ss_conf 79855538876214454703216999961689986313343457877287999999985101320561212168876787
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHH
Q ss_conf 88998766535111214577863089899576655478997357643489775663028864021120589999979899
Q 000459 801 NQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIV 880 (1484)
Q Consensus 801 ~~gG~~aAa~RYi~~rLs~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~sT~IP~hNp~eVi 880 (1484)
++||++||||||||||||++++.||+++|+++|+|.++||+.+||+||||+||||||||++|||||||||||||||.|||
T Consensus 392 ~~~gd~aAA~RYte~rLs~~a~~l~~~~d~~~vd~~ydd~~~~EP~vlp~~iP~lLvNGa~GIavGmaTnIPphNl~Evi 471 (803)
T 3qx3_A 392 LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIV 471 (803)
T ss_dssp TTTTTTCCCTTSCEECBCTTHHHHSCHHHHTTSCEEEETTEEEEESCCCCSSCHHHHTTCEEECSSCEEECCCCCHHHHH
T ss_pred CCCCCCCCCHHHHHEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHH
T ss_conf 77997554442452100488999852035564545368986126650266677003447762672010478999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHH-HHHHHHCC--
Q ss_conf 999998739998899762258870899813578861999999999980706999823887887899999-99998128--
Q 000459 881 ANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREF-LESIIDQN-- 957 (1484)
Q Consensus 881 ~a~~~~L~~~~~~p~~P~~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~-i~~l~~~~-- 957 (1484)
+|++++|+|+++.||+|||+||+|.|+. +|+| +|++||+++++++++|+||||||++||+.|++. |+.+.+.+
T Consensus 472 ~a~~~ll~~~~~~pd~P~~~gf~G~i~~---tGrg-~~~~rg~~~~~~~~~IvITELPy~~~t~~~k~~lle~i~~~~~K 547 (803)
T 3qx3_A 472 NNVRRMLDGLDPHPMLPNYKNFKGTIQE---LGQN-QYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 547 (803)
T ss_dssp HHHHHHHTTCCCCCCCCCCTTCCSEEEE---EETT-EEEEECEEEEEETTEEEEEECCTTCCHHHHHHHTHHHHHHCCSS
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEE---CCCC-EEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999995699988777702797535973---6982-79999999995597799997898565657999999998741326
Q ss_pred -CCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -8543301212588713999992740247889999986705612002550789748996200069899999999999999
Q 000459 958 -DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEF 1036 (1484)
Q Consensus 958 -~~~I~d~~d~s~~~~v~i~I~lk~~~~~~~~~~~L~k~tkL~ssis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~ 1036 (1484)
+++|+||+|+||+++|||+|+|+++.++++++++||++|+||++|++|||++||++|++|+|+++++||++|++||+++
T Consensus 548 ~~~~I~d~rDes~~~gvrivI~Lk~~~~~~~vl~~Lyk~t~Lq~sf~~n~~~l~d~~g~~pk~~~l~eiL~~F~~~R~ev 627 (803)
T 3qx3_A 548 TPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY 627 (803)
T ss_dssp SCCCCSEEEECCCSSCCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECCCEEEECTTSCEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECEEEEEECCCCCCCEECCHHHHHHHHHHHHHHH
T ss_conf 77651123001899816999997587128889988998668727860116999878888650389999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCC-CC
Q ss_conf 99999999999999999998678775310314367616543799999997399989889853788740678633112-36
Q 000459 1037 YEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEES-EE 1115 (1484)
Q Consensus 1037 y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i~~k~k~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~~~~-ee 1115 (1484)
|+||++|++++++.++++|+||+|||++||+|+|+|.|++|++++.+|+++||+++|.+++..........++.+++ ++
T Consensus 628 ~~rR~~~lL~kLq~el~kL~nk~rFI~~vi~g~l~i~nkkk~~li~eL~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~ 707 (803)
T 3qx3_A 628 YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDD 707 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCCHHHHHHHHHHTTCCSCHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999999999999999999999998617356647768999999997599888712222210001232211232211
Q ss_pred CCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 95323698945099987073323679999999999999999999998159056899999999999989858999999
Q 000459 1116 NPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAE 1192 (1484)
Q Consensus 1116 ~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~L~~~t~~dLW~~DLd~l~~el~~~~~~~~~~~ 1192 (1484)
..+........+|||||+||||+||.|++++|++|++++++|++.|+++||++||++||++|+++|+++++++.+.+
T Consensus 708 ~~~~~~~~~~~~ydYLL~M~i~sLT~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~~~e~~e~~~~ 784 (803)
T 3qx3_A 708 SSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDG 784 (803)
T ss_dssp ---------CCCCHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12233445666566885790542389999999999999999999997699899999999999999999999888877
No 4
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=1.00 E-value=1 Score=1604.68 Aligned_cols=694 Identities=23% Similarity=0.351 Sum_probs=614.9
Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 9999986421178852046987776--89998-65245436998999937998316635678770244346740363126
Q 000459 401 ETLLSWANFKQSKDLKKNDGTKTED--VRGIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPL 477 (1484)
Q Consensus 401 ~~il~~a~~r~~~~~kk~~~~kk~~--l~gip-KL~Da~~ag~k~~~~~eLfL~EGDSA~g~ak~g~~~~~r~~q~v~PL 477 (1484)
++++.++++|.+++... .|++. .+++| ||+||+ ++++++|||||||||||||||+||| ||+|||||||
T Consensus 2 ~k~~~~~~ar~~~~~~~---~rk~~~~~~~lpgKL~dc~---~~~~~~~eL~lvEGDSAgGsak~gR---dr~~qailPL 72 (767)
T 2xkj_E 2 EMAISKAGRRLKAAKKV---ERKKIVSGPALPGKLADCV---GQTREESELFIVEGDSAGGSAKQAR---DKNFQAIMPI 72 (767)
T ss_dssp --------------------CCCCCSSSCSSTTTCBCCC---C-CGGGCEEEEEEHHHHHHHHHHHS---CTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHH---HHCCCCCCCCCCHHHHHCC---CCCCCCEEEEEEECCCCCCHHHHCC---CCCCCCCCCC
T ss_conf 37999999999999876---5334565455817667432---5897655899951787755133037---7543321355
Q ss_pred CCCCHHHHCCCHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76440021134566622074889999868888876576223565229995142111002457999998877654320124
Q 000459 478 RGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLA 557 (1484)
Q Consensus 478 rGK~LNv~~a~~~~i~~N~Ei~~i~~~lGl~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1484)
|||+|||++|+.+||++|+||++|++||||++|.+ ++++|||||||||||
T Consensus 73 RGKiLNv~ka~~~ki~~n~Ei~~i~~alG~~~g~~--~~~~lRY~kiiImtD---------------------------- 122 (767)
T 2xkj_E 73 RGKILNTWEVSSDEVLASQEVHDIAIAIGVDPGSD--DLSELRYGKICILAD---------------------------- 122 (767)
T ss_dssp SSCCCCCTTSCTTTGGGSHHHHHHHHHHTCCTTCC--CCTTCCCSEEEEECC----------------------------
T ss_pred CCCHHHHHCCCHHHHHCCHHHHHHHHHHCCCCCCC--CCCCCCCCEEEEEEC----------------------------
T ss_conf 55202353087988860488999999968886433--331266466998306----------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 79999831467999999631411125978999404413787258707997080359999998089998632488447987
Q 000459 558 QDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGT 637 (1484)
Q Consensus 558 aD~DGsHI~~Lll~ff~~~~p~Li~~~g~i~~~~tPl~k~~~kg~~~~~fys~~e~e~~~~~~~~~~~~~~ik~~KGLG~ 637 (1484)
|||||+||++|||||||+|||+||+. ||||+|+|||||++ +|+++.|||+++|+++|+.++++ .++|+|||||||||
T Consensus 123 aDvDG~HI~~Llltff~r~~p~Li~~-G~vy~a~pPl~kv~-~gk~~~y~~~~~e~~~~~~~~~~-~~~~~IqRYKGLGE 199 (767)
T 2xkj_E 123 ADSDGLHIATLLCALFVKHFPALVEE-GHLYVAMPPLFRID-IGKDVHYALDDEELETILKNVKG-NKNPQITRFKGLGE 199 (767)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHHHHHT-TCEEEECCCSEEEE-ETTEEEEESSHHHHHHHHHTCCS-SCCCEEEECCCGGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHC-CCEEEECCCEEEEE-ECCEEEEEECHHHHHHHHHHHHC-CCCCCEECCCCCCC
T ss_conf 88882111488999999974898765-91899429879999-89877862089999999998514-79874220068887
Q ss_pred CCHHHHHHHHHCCCCCCCCEEECCC--HHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------CCC-CCCCCCCCHH
Q ss_conf 8716689985204752101388370--0199999985012368999865103899-----------766-5565313538
Q 000459 638 STSKEGKEYFQNITLHKKDFVWEDD--QDGEAIELAFSKKKIEARKKWLLQFEPG-----------NHL-DQKEKYIKYS 703 (1484)
Q Consensus 638 ~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~rk~~~~~~~~~-----------~~l-d~~~~~~~~~ 703 (1484)
|+|+|+|||||||+.|+...+++++ .+.+.++++|+++++++||+||.++... +++ ++++.+++|+
T Consensus 200 mnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~lmgkk~ve~RKewI~~~~~~~~~d~~~~~~~~~~~~~~~~~i~i~ 279 (767)
T 2xkj_E 200 MNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNLADITVEDKLTMTSLAHHATENRSVA 279 (767)
T ss_dssp SCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHHHCGGGHHHHHHHHHHHGGGCC-----------------CEEEHH
T ss_pred CCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEEEHH
T ss_conf 88777767514802067899972648779999999828999538899999567422212543356654456773130099
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCEEHHHHHCCCCC---CCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHH
Q ss_conf 999999999999742-0666732238877630002443108999---9961677501002223577-7965199999984
Q 000459 704 DFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQSLASTILGM 778 (1484)
Q Consensus 704 ~fi~~e~i~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~k~~~~---~~~KvA~l~G~V~~~~~YH-HGe~Sl~~tiv~m 778 (1484)
+||+++|+.||||+| .|||||++||||||||||||+|++++++ +++||||+||+||+ +|| |||+|+|+|||+|
T Consensus 280 d~~~~~~l~YamsvI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~g--kYHPHGD~SiydaiVrm 357 (767)
T 2xkj_E 280 EFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLG--KYHPHGDSACYEAMVLM 357 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHH--HTCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH--CCCCCCHHHHHHHHHHH
T ss_conf 9999999999998751367870331578510101389997378888773432103888862--56887646799999997
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEE
Q ss_conf 1155457752210257787678889987665351112145778630898995766554-789973576434897756630
Q 000459 779 AQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLV 857 (1484)
Q Consensus 779 AQ~f~Gsnn~~Ll~~~GnFGsr~~gG~~aAa~RYi~~rLs~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLv 857 (1484)
||+| |||+|||+||||||||+ |++++|||||||||||++++.||+++|+++|+|+ ||||+.+||+||||+||||||
T Consensus 358 AQ~f--s~r~pLldg~GNFGS~d-gd~a~AA~RYte~rLs~ia~~ll~~~d~~tvdf~~n~Dg~~~EP~vlp~~iP~lLv 434 (767)
T 2xkj_E 358 AQPF--SYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILL 434 (767)
T ss_dssp HCTT--TCSSCSEECSSCCCBTT-BTTCCCCTTTCEEEECGGGHHHHTTTTTTCSCEEECTTSSSEEESSCCCSSCHHHH
T ss_pred HHHH--HCCCCEEECCCCCCCCC-CCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHH
T ss_conf 3000--10661062689878989-98634454521230868999997533734004670778766682441645657776
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC-------CCCCCCCCCCEEE-------ECCCCCCCEEEEEEEE
Q ss_conf 2886402112058999997989999999873999889-------9762258870899-------8135788619999999
Q 000459 858 NGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEP-------MHPWYRGFGGTIE-------KTASKEAGVTYTVTGI 923 (1484)
Q Consensus 858 NGs~GIatG~sT~IP~hNp~eVi~a~~~~L~~~~~~p-------~~P~~~Gf~G~I~-------~~~~~g~G~~~~~~G~ 923 (1484)
|||+|||||||||||||||.|||+|++++|+|+++.. .-|||+++ |.|. ..|.+|+| +|++||+
T Consensus 435 NGa~GIavGmaT~IPphNl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptg-G~I~~~~~~i~~~Y~tGrG-~i~~rg~ 512 (767)
T 2xkj_E 435 NGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTK-AEIITPPEELLKIQTTGRG-SYRMRAV 512 (767)
T ss_dssp HCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSS-CEECCCHHHHHHHHHHSEE-EEEEECE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCC-CEEECCCHHHHHHHCCCCE-EEEEEEE
T ss_conf 4777512450168899899999999999845998877999742779989998-5581472156777104880-5999999
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCC-CCEEEEEEECC-HHHHHHHHHHHHHHCCCEE
Q ss_conf 9998070699982388788789999999998128-8543301212588-71399999274-0247889999986705612
Q 000459 924 IEEVNETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDD-TTVDFEVFLSE-ESMMRTKQEGLLKKFKLTT 1000 (1484)
Q Consensus 924 ~e~~~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~-~~v~i~I~lk~-~~~~~~~~~~L~k~tkL~s 1000 (1484)
|++. +++|+||||||++|+++|+++|+++++.+ +++|+||+|+|++ ++|||+|++++ +..++.+++.||++|+||+
T Consensus 513 ~~ie-~~~ivITElPy~v~~~~~ie~I~~l~~~kki~~I~d~rDesd~~~gvrivI~lk~~~~~~~~vl~~L~k~T~Lq~ 591 (767)
T 2xkj_E 513 YTIE-KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVMSHLFATTDLES 591 (767)
T ss_dssp EEEE-TTEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESCTTSCHHHHHHHHHHHSTTEE
T ss_pred EEEE-CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHH
T ss_conf 9997-887999968986769999999999996599876102030359988679999978677898999999987146133
Q ss_pred ECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCHHHH
Q ss_conf 00255078974899620006989999999999999999999999999999999998678775310314367616543799
Q 000459 1001 TISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDL 1080 (1484)
Q Consensus 1001 sis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i~~k~k~el 1080 (1484)
+|++ ||++||.+|+ |+|+++++||++|++||+++|+||++|+|++++.++|+|++++.++..+ +.
T Consensus 592 sf~~-Nm~~l~~~g~-p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~i-------------D~ 656 (767)
T 2xkj_E 592 SYRV-NLNMIGEDGR-PQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDI-------------DT 656 (767)
T ss_dssp EEEE-ECEEECTTSC-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-------------HH
T ss_pred HCCC-CEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------------HH
T ss_conf 1011-2589756992-6876899999999999999999999999999999999986878789789-------------99
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999739998988985378874067863311236953236989450999870733236799999999999999999999
Q 000459 1081 LLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDD 1160 (1484)
Q Consensus 1081 v~eL~~~gF~~~~~~sk~~~~a~~~~~e~~~~~ee~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~ 1160 (1484)
|+++++ .+.+.. ..++ ..|++++.|++|||+|+|++||++++++|++|++++++++++
T Consensus 657 vI~iIr--------~s~~~k---~~L~-----------~~f~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~ 714 (767)
T 2xkj_E 657 VIRIIR--------EEDQPK---PVLM-----------EHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAI 714 (767)
T ss_dssp HHHHHH--------HCSSHH---HHHH-----------HHHTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--------HCCCHH---HHHH-----------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998--------566658---9998-----------733899999999998089986444799999999999999999
Q ss_pred HHCC--CC---HHHHHHHHHHHHHHH
Q ss_conf 9815--90---568999999999999
Q 000459 1161 LRKA--TP---ESLWVKDLDALDMQL 1181 (1484)
Q Consensus 1161 L~~~--t~---~dLW~~DLd~l~~el 1181 (1484)
|+.+ ++ ..+|.++|.++.+++
T Consensus 715 l~~iL~~~~~~~~~i~~el~~~~~~y 740 (767)
T 2xkj_E 715 IREQLENPESLKNLIISELKEDAKKF 740 (767)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99986598999999999999999982
No 5
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=1.00 E-value=1 Score=1528.50 Aligned_cols=637 Identities=24% Similarity=0.364 Sum_probs=575.9
Q ss_pred CCC-CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHCCCHHHHHHCHHHHHHHHHHC
Q ss_conf 998-6524543699899993799831663567877024434674036312676440021134566622074889999868
Q 000459 428 GIS-KLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILG 506 (1484)
Q Consensus 428 gip-KL~Da~~ag~k~~~~~eLfL~EGDSA~g~ak~g~~~~~r~~q~v~PLrGK~LNv~~a~~~~i~~N~Ei~~i~~~lG 506 (1484)
++| ||+||. ++++++|||||||||||+|||+||| +|.||||||||||+|||++|+.+|+++|+||++|++|||
T Consensus 5 ~lpgkl~dc~---~~~~~~~eL~lvEGDSA~Gsak~gR---d~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG 78 (692)
T 2xcs_B 5 SLPGKLADCS---SKSPEECEIFLVEGDSAGGSTKSGR---DSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFG 78 (692)
T ss_dssp ----CCBCCS---CCCTTTCEEEEESSHHHHHHHHHHS---CTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHC
T ss_pred CCCCHHHCCC---CCCCCCCEEEEECCCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHCCHHHHHCCHHHHHHHHHHC
T ss_conf 8973333478---7885642488842776667422346---655434133457532353286877631478999999958
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 88887657622356522999514211100245799999887765432012479999831467999999631411125978
Q 000459 507 LKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSF 586 (1484)
Q Consensus 507 l~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~ 586 (1484)
|++|.+| ++++||||||||||| ||||||||++|||||||+|||+||+. ||
T Consensus 79 ~~~g~~~-~~~~lrY~kiiImTD----------------------------aD~DGsHI~~Llltff~r~~~~Li~~-g~ 128 (692)
T 2xcs_B 79 TGIGGDF-DLAKARYHKIVIMTD----------------------------ADVDGAHIRTLLLTFFYRFMRPLIEA-GY 128 (692)
T ss_dssp SCCGGGC-CGGGCSCSEEEECCC----------------------------SSHHHHHHHHHHHHHHHHHCHHHHHT-TC
T ss_pred CCCCCCC-CCCCCCCCEEEEEEC----------------------------CCCCCCHHHHHHHHHHHHHCHHHHHC-CE
T ss_conf 7868545-644346563898306----------------------------88883111568999999968687636-80
Q ss_pred EEEEECCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCC--HH
Q ss_conf 9994044137872587079970803599999980899986324884479878716689985204752101388370--01
Q 000459 587 LVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDD--QD 664 (1484)
Q Consensus 587 i~~~~tPl~k~~~kg~~~~~fys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~--~~ 664 (1484)
||+++||+ ||||||||+|+|+||||||++++...-+.+++ .+
T Consensus 129 vyia~pP~------------------------------------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~ 172 (692)
T 2xcs_B 129 VYIAQPPT------------------------------------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEA 172 (692)
T ss_dssp EEECCCCS------------------------------------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHH
T ss_pred EEEECCCH------------------------------------HHCCCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHH
T ss_conf 59936915------------------------------------632644499899998844830026899743755659
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCEEH
Q ss_conf 9999998501236899986510389976655------65313538999999999999742-0666732238877630002
Q 000459 665 GEAIELAFSKKKIEARKKWLLQFEPGNHLDQ------KEKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKIL 737 (1484)
Q Consensus 665 ~~~~~~~f~~~~~~~rk~~~~~~~~~~~ld~------~~~~~~~~~fi~~e~i~ys~~~~-~RaIP~~~DGLKP~QRkIL 737 (1484)
.+.++++|++ ++++||+||.++.+.+++|. .+.+++|++|++++|+.||||+| +|||||++|||||||||||
T Consensus 173 ~~~~~~lmg~-~~~~Rk~~i~~~~~~~~ld~~eL~~~~i~~~~i~~~~~~~~l~Yamsvi~~RAlPdv~DGLKPvqRRIL 251 (692)
T 2xcs_B 173 DQTFEMLMGD-VVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRIL 251 (692)
T ss_dssp HHHHHHHHSS-CHHHHHHHHHHHCCCCC------------EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHH
T ss_conf 9999998189-941879999845975424543333464256209999999999988876641468713306883267899
Q ss_pred HHHHCCCCC---CCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 443108999---9961677501002223577-796519999998411554577522102577876788899876653511
Q 000459 738 FCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYI 813 (1484)
Q Consensus 738 ~~~~k~~~~---~~~KvA~l~G~V~~~~~YH-HGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~~aAa~RYi 813 (1484)
|+|++++++ +++||||+||+||+ +|| |||+|+|+|||+|||+| |||+|||+|||||||+ ||++|||||||
T Consensus 252 yam~~~~l~~~~~~~K~Ar~vG~V~g--kYHPHGD~SiydaiVrmAQ~f--s~r~pLldg~GNFGS~--~Gd~aAA~RYt 325 (692)
T 2xcs_B 252 YGLNEQGMTPDKSYKKSARIVGDVMG--KYHPHGDSSIYEAMVRMAQDF--SYRYPLVDGQGNFGSM--DGDGAAAMRFT 325 (692)
T ss_dssp HHHHHTTCCTTSCCEEHHHHHHHHHH--HTCCSCHHHHHHHHHHHHCTT--TCSSCSEEEESCCCCT--TCCCCCCTTTC
T ss_pred HHHHHHCCCCCCCCEEEHHHHHHHHH--CCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCC--CCCCCCCCCCE
T ss_conf 99998279889872143112577886--268866788999999985462--0246432478987898--89765652310
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 12145778630898995766554-78997357643489775663028864021120589999979899999998739998
Q 000459 814 FTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMM 892 (1484)
Q Consensus 814 ~~rLs~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~sT~IP~hNp~eVi~a~~~~L~~~~~ 892 (1484)
|||||++++.||+++|+++|+|+ ||||+.+||+||||+|||||||||+|||||||||||||||.|||+|++++|+|+++
T Consensus 326 e~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPphNl~Evi~a~~~~i~~~~~ 405 (692)
T 2xcs_B 326 EARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDI 405 (692)
T ss_dssp EEEECHHHHHHHTTTTTTCSCEEECTTSSCEEESSCCCSSCHHHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTC
T ss_pred EECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 01088999998644160310577387987567022363330888737776303201588999999999999999659999
Q ss_pred ----------CCCCCC---CCCCCCEEEECCCCCCCEEEEEEEEEEEEE----CCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf ----------899762---258870899813578861999999999980----706999823887887899999999981
Q 000459 893 ----------EPMHPW---YRGFGGTIEKTASKEAGVTYTVTGIIEEVN----ETTLRIKELPIRRWTQDYREFLESIID 955 (1484)
Q Consensus 893 ----------~p~~P~---~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~----~~~i~ITELP~~~~t~~y~e~i~~l~~ 955 (1484)
.|+||| +.||+|.+ ..|.+|+| +|++||++++++ +++|+||||||++|+++|+++|.++++
T Consensus 406 ~~~~l~~~i~gPDFPTGg~I~g~~gi~-~~y~tGrG-~~~~rg~~~ie~~~~~~~~ivITElPy~v~k~~lie~I~~lv~ 483 (692)
T 2xcs_B 406 SIAELMEDIEGPDFPTAGLILGKSGIR-RAYETGRG-SIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVR 483 (692)
T ss_dssp CHHHHTTTCCSBCCTTCCEEECSHHHH-HHHHHSEE-EEEEECEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCCCCCEEECCCCEE-EEEECCCC-EEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 889998527799899875676775515-33643892-6999999999843787766999955986649999999999985
Q ss_pred CC-CCCCCCCCCC-CCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 28-8543301212-588713999992740247889999986705612002550789748996200069899999999999
Q 000459 956 QN-DSFIRGFRQY-SDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIR 1033 (1484)
Q Consensus 956 ~~-~~~I~d~~d~-s~~~~v~i~I~lk~~~~~~~~~~~L~k~tkL~ssis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~R 1033 (1484)
.+ +++|+||+|+ ||+++|||+|+|+++.+++.++++|||+|+||++|++|+++++| |+ |+|+++++||++|++||
T Consensus 484 ~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~~l~~L~k~t~Lq~s~~~Nm~~l~d--g~-p~~~~l~~iL~~f~~~R 560 (692)
T 2xcs_B 484 DKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVN--GR-PKLINLKEALVHYLEHQ 560 (692)
T ss_dssp TTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEET--TE-EEECCHHHHHHHHHHHH
T ss_pred CCCCCCEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEC--CE-EEECCHHHHHHHHHHHH
T ss_conf 6988870142134789995599999789878889999999845651232004899989--97-78778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 99999999999999999999998678775310314367616543799999997399989889853788740678633112
Q 000459 1034 LEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEES 1113 (1484)
Q Consensus 1034 le~y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i~~k~k~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~~~~ 1113 (1484)
+++|+||++|+|++++.++|+|+++++++..+ +.|+.+ ++.+++.+++...+++
T Consensus 561 ~~v~~rR~~~~L~k~~~r~hilegl~~a~~~i-------------D~vI~i--------Ir~s~~~~~a~~~L~~----- 614 (692)
T 2xcs_B 561 KTVVRRRTQYNLRKAKDRAHILEGLRIALDHI-------------DEIIST--------IRESDTDKVAMESLQQ----- 614 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-------------HHHHHH--------HHTCSSHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--------HHHCCCHHHHHHHHHH-----
T ss_conf 99999999999999999999985699999857-------------778889--------8818999999998765-----
Q ss_pred CCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHH---HHHHHHHHHH
Q ss_conf 369532369894509998707332367999999999999999999999815--905689---9999999999
Q 000459 1114 EENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKA--TPESLW---VKDLDALDMQ 1180 (1484)
Q Consensus 1114 ee~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~L~~~--t~~dLW---~~DLd~l~~e 1180 (1484)
.|++++.|++|||+|+||+||++++++|++|++++++++++|+.+ ++..+| .++|.++.++
T Consensus 615 ------~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~ 680 (692)
T 2xcs_B 615 ------RFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDR 680 (692)
T ss_dssp ------HHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf ------058999999999971899863678999999999999999999998679999999999999999997
No 6
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=1.00 E-value=1 Score=1016.66 Aligned_cols=445 Identities=22% Similarity=0.332 Sum_probs=404.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCEEHHHHHCCCCC---CCCEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 65313538999999999999742-0666732238877630002443108999---9961677501002223577-79651
Q 000459 696 KEKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQS 770 (1484)
Q Consensus 696 ~~~~~~~~~fi~~e~i~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~k~~~~---~~~KvA~l~G~V~~~~~YH-HGe~S 770 (1484)
.+.+++|++|++++|+.||||+| .|||||++||||||||||||+|++++++ +++||||+||+||+ +|| |||+|
T Consensus 27 ~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~g--kYHPHGD~S 104 (514)
T 2inr_A 27 IIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIG--QYHPHGDSS 104 (514)
T ss_dssp --------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHH--HTCC---CH
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHH--CCCCCCHHH
T ss_conf 644413999998999999999865246873320788504469999998489877781344120766876--579856878
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 999999841155457752210257787678889987665351112145778630898995766554-7899735764348
Q 000459 771 LASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYM 849 (1484)
Q Consensus 771 l~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~~aAa~RYi~~rLs~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~ 849 (1484)
+|+|||+||||| |||+|||+|||||||+ ||++||||||||||||++++.||+++|+++|+|+ ||||+.+||+|||
T Consensus 105 iydaiVrMAQdf--s~r~pLldgqGNFGS~--dGd~aAA~RYte~rLs~ia~~ll~did~~tvdf~~nyDg~~~EP~vlp 180 (514)
T 2inr_A 105 VYEAMVRLSQDW--KLRHVLIEMHGNNGSI--DNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLP 180 (514)
T ss_dssp HHHHHHHTTCTT--TCSSCSEEEESCCCCT--TCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCC
T ss_pred HHHHHHHHHHHH--HHCCEEEECCCCCCCC--CCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999980345--5076247568887888--899877767748722399999875337350147768998767981057
Q ss_pred CCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCCC---CCEEE-------ECCCCCCCEE
Q ss_conf 97756630288640211205899999798999999987399988--997622588---70899-------8135788619
Q 000459 850 PIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME--PMHPWYRGF---GGTIE-------KTASKEAGVT 917 (1484)
Q Consensus 850 piiP~vLvNGs~GIatG~sT~IP~hNp~eVi~a~~~~L~~~~~~--p~~P~~~Gf---~G~I~-------~~~~~g~G~~ 917 (1484)
|+|||||||||+|||||||||||||||.|||+|++++|+|+++. +|.||++|+ +|.+. ..|.+|+| +
T Consensus 181 ~~iP~lLvNGs~GIavGmATnIPphNl~Evi~a~~~li~~~~~~~~~l~~~i~GPDFPtGgii~~~~gi~~~y~tGrG-~ 259 (514)
T 2inr_A 181 SRFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKG-R 259 (514)
T ss_dssp CSSCHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHHHHHHHSEE-E
T ss_pred CCCCHHHHCCCCCEECCEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCCCC-E
T ss_conf 566577762787412343068899899999999999964999987999741769999988678772346777304892-6
Q ss_pred EEEEEEEEEEE----CCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 99999999980----70699982388788789999999998128-85433012125887139999927402478899999
Q 000459 918 YTVTGIIEEVN----ETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGL 992 (1484)
Q Consensus 918 ~~~~G~~e~~~----~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~i~I~lk~~~~~~~~~~~L 992 (1484)
|++||+|++++ +++|+||||||++|+++|+++|+++++.+ +++|+||+|+||++||||+|+|+++.+++.++++|
T Consensus 260 i~~rg~~~ie~~~~~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L 339 (514)
T 2inr_A 260 IIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYL 339 (514)
T ss_dssp EEEECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHH
T ss_pred EEEEEEEEEEECCCCCCEEEEEECCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99999999971479862799995495403999999999998659857531434337998428999979986889999999
Q ss_pred HHHCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEE
Q ss_conf 86705612002550789748996200069899999999999999999999999999999999986787753103143676
Q 000459 993 LKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVV 1072 (1484)
Q Consensus 993 ~k~tkL~ssis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i 1072 (1484)
||+|+||++|++ ||++| .+|+ |+|+++++||++|++||+++|+||++|+|++++.++|+|+++++++..+
T Consensus 340 ~k~t~Lq~s~~~-Nm~al-~~g~-p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~i------- 409 (514)
T 2inr_A 340 YKNSDLQISYNF-NMVAI-SDGR-PKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSIL------- 409 (514)
T ss_dssp TTSSTTEEEEEE-ECEEE-ETTE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH-------
T ss_pred HHHCCCEEEEEE-EEEEE-ECCE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 874576134544-68996-1997-8977899999999999999999999999999999999999899999989-------
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 16543799999997399989889853788740678633112369532369894509998707332367999999999999
Q 000459 1073 NNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRD 1152 (1484)
Q Consensus 1073 ~~k~k~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~~~~ee~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~ 1152 (1484)
+.++.++ +.+++..++...+++ .|++++.||+|||+|+||+||++++++|++|++
T Consensus 410 ------d~vI~iI--------r~s~~~~~a~~~L~~-----------~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~ 464 (514)
T 2inr_A 410 ------DKVIELI--------RSSKNKRDAKENLIE-----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHK 464 (514)
T ss_dssp ------HHHHHHH--------HHCCSHHHHHHHHHT-----------TSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHH
T ss_pred ------HHHHHHH--------HCCCCHHHHHHHHHH-----------HCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf ------9999999--------838998999999998-----------639999999999966699875679999999999
Q ss_pred HHHHHHHHHHCC--CC---HHHHHHHHHHHHHHHH
Q ss_conf 999999999815--90---5689999999999998
Q 000459 1153 KLNEEVDDLRKA--TP---ESLWVKDLDALDMQLD 1182 (1484)
Q Consensus 1153 el~~ei~~L~~~--t~---~dLW~~DLd~l~~el~ 1182 (1484)
++++++++|+.+ ++ .++|.++|.++.+++-
T Consensus 465 ~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg 499 (514)
T 2inr_A 465 ELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK 499 (514)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999967999999999999999999708
No 7
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=1.00 E-value=1 Score=1014.61 Aligned_cols=445 Identities=22% Similarity=0.297 Sum_probs=408.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCEEHHHHHCCCCC---CCCEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 65313538999999999999742-0666732238877630002443108999---9961677501002223577-79651
Q 000459 696 KEKYIKYSDFVNKELILFSMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQS 770 (1484)
Q Consensus 696 ~~~~~~~~~fi~~e~i~ys~~~~-~RaIP~~~DGLKP~QRkIL~~~~k~~~~---~~~KvA~l~G~V~~~~~YH-HGe~S 770 (1484)
.+.+++|++|++++|+.||||+| .|||||++||||||||||||+|++++++ +++||||+||+||+ +|| |||+|
T Consensus 3 ~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~g--kYHPHGD~S 80 (496)
T 2nov_A 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMG--NFHPHGDSS 80 (496)
T ss_dssp --------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHH--HTCCSCSTT
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHH--CCCCCCHHH
T ss_conf 746525999999999999999876356882211788605599999997489987771356433766876--579866878
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 999999841155457752210257787678889987665351112145778630898995766554-7899735764348
Q 000459 771 LASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYM 849 (1484)
Q Consensus 771 l~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~~aAa~RYi~~rLs~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~ 849 (1484)
+|+|||+||||| |||+|||+|||||||+ ||++||||||||||||++++.||+++|+++|+|+ ||||+.+||+|||
T Consensus 81 iydaiVrMAQdf--s~r~pLldgqGNFGS~--dGd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp 156 (496)
T 2nov_A 81 IYDAMVRMSQNW--KNREILVEMHGNNGSM--DGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLP 156 (496)
T ss_dssp THHHHHHTTCTT--TSSSCSEEEESCSCCS--SSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCC
T ss_pred HHHHHHHHHHHH--HCCCEEECCCCCCCCC--CCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 999999981334--4075336078987888--898666657647714098999865316140047738898867984137
Q ss_pred CCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCCC---CCEEE-------ECCCCCCCEE
Q ss_conf 97756630288640211205899999798999999987399988--997622588---70899-------8135788619
Q 000459 850 PIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMME--PMHPWYRGF---GGTIE-------KTASKEAGVT 917 (1484)
Q Consensus 850 piiP~vLvNGs~GIatG~sT~IP~hNp~eVi~a~~~~L~~~~~~--p~~P~~~Gf---~G~I~-------~~~~~g~G~~ 917 (1484)
|+|||||||||+|||||||||||||||.|||+|++++|+|++++ +|.||++|+ +|.|. ..|.+|+| +
T Consensus 157 ~~iP~lLvNGs~GIavGmAT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPtGgii~~~~gi~~~y~tGrG-~ 235 (496)
T 2nov_A 157 AAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKG-R 235 (496)
T ss_dssp CSSCHHHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHHHHHHHSEE-E
T ss_pred CCCCHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCCCC-E
T ss_conf 667577762787401132168899899999999999964999986998742669999988778671678988644893-5
Q ss_pred EEEEEEEEEEE----CCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 99999999980----70699982388788789999999998128-85433012125887139999927402478899999
Q 000459 918 YTVTGIIEEVN----ETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGL 992 (1484)
Q Consensus 918 ~~~~G~~e~~~----~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~i~I~lk~~~~~~~~~~~L 992 (1484)
|++||+|++++ +++|+||||||++|+++|+++|+++++.+ +++|+||+|+||++||||+|+|+++.+++.++++|
T Consensus 236 ~~~rg~~~ie~~~~g~~~IvITElPy~v~~~~lie~I~~lv~~kki~~I~d~rDesd~~gvrivI~lk~~~~~~~vl~~L 315 (496)
T 2nov_A 236 VVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYL 315 (496)
T ss_dssp CCEECEEEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHH
T ss_pred EEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99999999984478987799995899775999999999998669867644102147998438999979988889999999
Q ss_pred HHHCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEE
Q ss_conf 86705612002550789748996200069899999999999999999999999999999999986787753103143676
Q 000459 993 LKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVV 1072 (1484)
Q Consensus 993 ~k~tkL~ssis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i 1072 (1484)
||+|+||++|++ ||++| .+|+ |+|+++++||++|++||+++|+||++|+|++++.++|+|+++++++..+
T Consensus 316 ~k~t~Lq~s~~~-Nm~al-~~g~-p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~i------- 385 (496)
T 2nov_A 316 FKYTDLQINYNF-NMVAI-DNFT-PRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISIL------- 385 (496)
T ss_dssp HHSSTTEECCEE-ECEEE-ETTE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH-------
T ss_pred HHHCCCCEEEEE-EEEEE-ECCE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 884474023344-79997-4996-7877899999999999999999999999989999999999999999877-------
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 16543799999997399989889853788740678633112369532369894509998707332367999999999999
Q 000459 1073 NNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRD 1152 (1484)
Q Consensus 1073 ~~k~k~elv~eL~~~gF~~~~~~sk~~~~a~~~~~e~~~~~ee~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~ 1152 (1484)
+.++.+ ++.+++..++..++++ .|++++.|++|||+|+||+||++++++|++|++
T Consensus 386 ------d~vI~i--------Ir~s~~~~~a~~~L~~-----------~f~lse~qa~~IL~m~L~rLt~~e~~kl~~E~~ 440 (496)
T 2nov_A 386 ------DEVIAL--------IRASENKADAKENLKV-----------SYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEA 440 (496)
T ss_dssp ------HHHHHH--------HTTSSSHHHHHSSCCC------------CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHH
T ss_pred ------HHHHHH--------HHHCCCHHHHHHHHHH-----------HCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf ------668999--------9808998999999998-----------618999999999967598873678999999999
Q ss_pred HHHHHHHHHHCC--CC---HHHHHHHHHHHHHHHH
Q ss_conf 999999999815--90---5689999999999998
Q 000459 1153 KLNEEVDDLRKA--TP---ESLWVKDLDALDMQLD 1182 (1484)
Q Consensus 1153 el~~ei~~L~~~--t~---~dLW~~DLd~l~~el~ 1182 (1484)
++++++++|+.+ ++ .++|.++|.++.+++-
T Consensus 441 ~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~ 475 (496)
T 2nov_A 441 ELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA 475 (496)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999967999999999999999999808
No 8
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=1.00 E-value=1 Score=961.53 Aligned_cols=425 Identities=24% Similarity=0.393 Sum_probs=384.0
Q ss_pred HHHHH-CCCCCCCCCCCCCCCCEEHHHHHCCCCC---CCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99742-0666732238877630002443108999---9961677501002223577-79651999999841155457752
Q 000459 714 SMADL-QRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNI 788 (1484)
Q Consensus 714 s~~~~-~RaIP~~~DGLKP~QRkIL~~~~k~~~~---~~~KvA~l~G~V~~~~~YH-HGe~Sl~~tiv~mAQ~f~Gsnn~ 788 (1484)
.||+| +|||||++||||||||||||+|++++++ +++||||+||+||| +|| |||+|+|+|||+|||+| |+|+
T Consensus 2 ~msVI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~g--kYHPHGD~SiydaiVrmAQ~f--~~r~ 77 (470)
T 3ilw_A 2 NASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMG--NYHPHGDASIYDSLVRMAQPW--SLRY 77 (470)
T ss_dssp -----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHH--HTCCCCSTHHHHHHHHHHCTT--TCSS
T ss_pred CCEEECCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHH--HCCC
T ss_conf 814871565772221798525499899998678778880335889999997--508984778999999996675--3374
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 210257787678889987665351112145778630898995766554-7899735764348977566302886402112
Q 000459 789 NLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGW 867 (1484)
Q Consensus 789 ~Ll~~~GnFGsr~~gG~~aAa~RYi~~rLs~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~ 867 (1484)
|||+|||||||| ||++||||||||||||++++.||+++|+++|+|+ ||||+.+||+||||+|||||||||+||||||
T Consensus 78 pLldgqGNFGS~--~Gd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~lLvNGs~GIavGm 155 (470)
T 3ilw_A 78 PLVDGQGNFGSP--GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGM 155 (470)
T ss_dssp CSEEEESCCCCS--SSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTC
T ss_pred CEEECCCCCCCC--CCCCCCCCCCEEEEHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCE
T ss_conf 124468888899--998455635335642099999987447221037647688845877046655287735877423130
Q ss_pred ECCCCCCCHHHHHHHHHHHHCCCCC--------------CCCCCC---CCCCCCEEEECCCCCCCEEEEEEEEEEEE---
Q ss_conf 0589999979899999998739998--------------899762---25887089981357886199999999998---
Q 000459 868 SSYIPNYNPRDIVANVRRLLNGEMM--------------EPMHPW---YRGFGGTIEKTASKEAGVTYTVTGIIEEV--- 927 (1484)
Q Consensus 868 sT~IP~hNp~eVi~a~~~~L~~~~~--------------~p~~P~---~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~--- 927 (1484)
|||||||||.|||+|++++|+|+++ .|+||+ +.|+.| |...|.||+| +|++||+|+++
T Consensus 156 AT~IPphNl~Evi~a~~~~i~~~~~~~~~~~~~l~~~i~gPDFPTGG~I~g~~g-i~~~y~tGrG-~i~~rg~~~ie~~~ 233 (470)
T 3ilw_A 156 ATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG-TADAYKTGRG-SIRMRGVVEVEEDS 233 (470)
T ss_dssp SCEECCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECSHH-HHHHHHHSEE-EEEEECEEEEEECT
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCC-HHHHHHCCCC-EEEEEEEEEEEECC
T ss_conf 027899999999999999965998776568798852165899998737878511-6888763895-59999999998516
Q ss_pred -ECCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCC-CCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf -070699982388788789999999998128-8543301212-5887139999927402478899999867056120025
Q 000459 928 -NETTLRIKELPIRRWTQDYREFLESIIDQN-DSFIRGFRQY-SDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTIST 1004 (1484)
Q Consensus 928 -~~~~i~ITELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~-s~~~~v~i~I~lk~~~~~~~~~~~L~k~tkL~ssis~ 1004 (1484)
++++|+||||||++|+++|+++|+++++.+ +++|+||+|+ |++++|||+|+|+++.+++.++++|||+|+||++|++
T Consensus 234 ~~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~lk~~~~~~~~l~~L~k~t~Lq~s~~~ 313 (470)
T 3ilw_A 234 RGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGA 313 (470)
T ss_dssp TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHEECE
T ss_conf 89877999937985679999999999986699875231012378998369999979998778999999875341330000
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCHHHHHHHH
Q ss_conf 50789748996200069899999999999999999999999999999999986787753103143676165437999999
Q 000459 1005 SNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLEL 1084 (1484)
Q Consensus 1005 ~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i~~k~k~elv~eL 1084 (1484)
||++++ +|+ |+|+++++||++|++||+++|+||++|+|++++.++|+|+++++++..+ +.|+.+
T Consensus 314 -Nm~al~-~g~-p~~~~l~eiL~~f~~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~i-------------D~vI~i 377 (470)
T 3ilw_A 314 -NMLAIV-DGV-PRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDAL-------------DEVIAL 377 (470)
T ss_dssp -ECEEEE-TTE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-------------HHHHHH
T ss_pred -EEEEEE-CCE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
T ss_conf -146788-893-0355899999999999999999999998888999999998899999979-------------999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 97399989889853788740678633112369532369894509998707332367999999999999999999999815
Q 000459 1085 RQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKA 1164 (1484)
Q Consensus 1085 ~~~gF~~~~~~sk~~~~a~~~~~e~~~~~ee~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~L~~~ 1164 (1484)
++.+++..++...+++ .|++++.|++|||+|+|++||++++++|++|++++++++++|+.+
T Consensus 378 --------Ir~s~~~~~a~~~L~~-----------~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~i 438 (470)
T 3ilw_A 378 --------IRASETVDIARAGLIE-----------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDI 438 (470)
T ss_dssp --------HHHCSSHHHHHHHHHH-----------HHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHCCCHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------9918998999999998-----------659999999999975799864478999999999999999999999
Q ss_pred --CC---HHHHHHHHHHHHHHH
Q ss_conf --90---568999999999999
Q 000459 1165 --TP---ESLWVKDLDALDMQL 1181 (1484)
Q Consensus 1165 --t~---~dLW~~DLd~l~~el 1181 (1484)
++ ..+|.++|.++.+++
T Consensus 439 L~~~~~~~~~i~~el~~i~~~y 460 (470)
T 3ilw_A 439 LAKPERQRGIVRDELAEIVDRH 460 (470)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6899999999999999999981
No 9
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=1.00 E-value=1 Score=952.16 Aligned_cols=420 Identities=23% Similarity=0.321 Sum_probs=381.4
Q ss_pred CCCCCCCCCCCCCCCCEEHHHHHCCCC---CCCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 066673223887763000244310899---99961677501002223577-79651999999841155457752210257
Q 000459 719 QRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAKVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQPN 794 (1484)
Q Consensus 719 ~RaIP~~~DGLKP~QRkIL~~~~k~~~---~~~~KvA~l~G~V~~~~~YH-HGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~ 794 (1484)
.|||||++||||||||||||+|+++++ ++++||||+||+||| +|| |||+|+|+|||+|||+| |||+|||+||
T Consensus 1 ~RALPdvrDGLKPvqRRILyam~~~~l~~~k~~~KsArvvG~V~g--kYHPHGD~SiydaiVrMAQdF--s~r~pLvdgq 76 (500)
T 3lpx_A 1 MRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIG--KYHPHGDTAVYDTIVRMAQPF--SLRYMLVDGQ 76 (500)
T ss_dssp --CCCBTTTCCCHHHHHHHHHHHHTTCCSSSCCEEHHHHHHHHHH--HTCCCCSSHHHHHHHHTTCTT--TCSSCSEEEE
T ss_pred CCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHH--CCCCCCHHHHHHHHHHHHHHH--HCCCCCCCCC
T ss_conf 998884011797435487899997388889985267655876875--648985778999999985663--2044001168
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCC
Q ss_conf 787678889987665351112145778630898995766554-7899735764348977566302886402112058999
Q 000459 795 GQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPN 873 (1484)
Q Consensus 795 GnFGsr~~gG~~aAa~RYi~~rLs~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~sT~IP~ 873 (1484)
|||||+ +|++||||||||||||++++.||+++|+++|+|+ ||||+.+||+||||+|||||||||+||||||||||||
T Consensus 77 GNFGS~--dGd~aAAmRYteaRLs~ia~~ll~did~~tvdf~~NyDg~~~EP~vlp~~iP~lLvNGs~GIAvGmATnIPp 154 (500)
T 3lpx_A 77 GNFGSV--DGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPP 154 (500)
T ss_dssp SCCCCT--TCCCCCCGGGCEEEECHHHHTTSTTTTTTCSCEEECTTSSSEEESSCCCSSCHHHHHCC-------CCBCCC
T ss_pred CCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCCCCCCEECCCCC
T ss_conf 888899--997232243676777899999986458440157647786535876607545675504877413120146899
Q ss_pred CCHHHHHHHHHHHHCCCCC----------CCCCCC---CCCCCCEEEECCCCCCCEEEEEEEEEEEE-----ECCEEEEE
Q ss_conf 9979899999998739998----------899762---25887089981357886199999999998-----07069998
Q 000459 874 YNPRDIVANVRRLLNGEMM----------EPMHPW---YRGFGGTIEKTASKEAGVTYTVTGIIEEV-----NETTLRIK 935 (1484)
Q Consensus 874 hNp~eVi~a~~~~L~~~~~----------~p~~P~---~~Gf~G~I~~~~~~g~G~~~~~~G~~e~~-----~~~~i~IT 935 (1484)
|||.|||+|++++|+|+++ .||||| +.|+.|.+ ..|.||+| +|++||+++++ ++++|+||
T Consensus 155 HNl~EVida~~~li~~~~~~~~eLm~~i~gPDfPtgg~i~g~~gi~-~~y~tGrG-~i~~ra~~~ie~~~~~~~~~IvIT 232 (500)
T 3lpx_A 155 HNLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIE-EAYRTGRG-KIKIRARASIDVHETTGKETIIVH 232 (500)
T ss_dssp CCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEECCHHHHH-HHHHHSEE-EEEEECEEEEEECTTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCHH-HHHHCCCC-EEEEEEEEEEEECCCCCCCEEEEE
T ss_conf 9999999999999639999879997318889899873676862258-88636993-599998999973256897139999
Q ss_pred ECCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCC
Q ss_conf 2388788789999999998128-854330121258871399999274024788999998670561200255078974899
Q 000459 936 ELPIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKG 1014 (1484)
Q Consensus 936 ELP~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~~~v~i~I~lk~~~~~~~~~~~L~k~tkL~ssis~~Nmvl~d~~G 1014 (1484)
||||++|+++|+++|+++++.+ +++|+||+|+||++||||+|+|+++.+++.++++|||+|+||++|++ ||++|+. |
T Consensus 233 ElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~~~~l~~L~k~T~Lq~sf~~-Nm~al~~-g 310 (500)
T 3lpx_A 233 ELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFGL-NMVALTN-G 310 (500)
T ss_dssp ECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEE-ECEEESS-S
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE-EEEEEEC-C
T ss_conf 6698567999999999998659987636003237998538999988987889999999874577035531-1799879-9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 62000698999999999999999999999999999999999867877531031436761654379999999739998988
Q 000459 1015 VIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPK 1094 (1484)
Q Consensus 1015 ki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i~~k~k~elv~eL~~~gF~~~~~ 1094 (1484)
+ |+|+++++||++|++||+++|+||++|+|++++.|+|+|++++.++..+ |.|+.+ +|
T Consensus 311 ~-pk~~~l~eiL~~f~~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~i-------------DevI~i--------IR 368 (500)
T 3lpx_A 311 Q-PKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANI-------------DPIIEM--------IK 368 (500)
T ss_dssp S-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-------------HHHHTT--------TT
T ss_pred E-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--------HH
T ss_conf 7-6777899999999999999999999988989999999998899999818-------------999999--------97
Q ss_pred CCCCHHHHHHCCCCCC----------------CCCCCC-------CCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9853788740678633----------------112369-------53236989450999870733236799999999999
Q 000459 1095 NSKSIEAVVAGATDET----------------EESEEN-------PEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADR 1151 (1484)
Q Consensus 1095 ~sk~~~~a~~~~~e~~----------------~~~ee~-------~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~ 1151 (1484)
.|++..+|..++++.. ....+. ....|++++.|++|||+|+|++||+.++++|++|+
T Consensus 369 ~s~~~~~Ak~~L~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lse~Qa~aIl~mrL~rLt~le~~ki~~E~ 448 (500)
T 3lpx_A 369 NSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEY 448 (500)
T ss_dssp TCSSHHHHHHHHHSSCCCCC-----------CTTSCTTCCCC----------CHHHHHHHHTCBGGGGSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39998999999984445410145666542001135311111123456666889999999997478875557799999999
Q ss_pred HHHHHHHHHHHCC--CCHHHH
Q ss_conf 9999999999815--905689
Q 000459 1152 DKLNEEVDDLRKA--TPESLW 1170 (1484)
Q Consensus 1152 ~el~~ei~~L~~~--t~~dLW 1170 (1484)
+++.++++.|+.+ ++..+|
T Consensus 449 ~~l~~~i~~l~~iL~~~~~~~ 469 (500)
T 3lpx_A 449 KALLDLIAELMHILATPARLM 469 (500)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999999999968999999
No 10
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=1.00 E-value=1 Score=930.52 Aligned_cols=407 Identities=22% Similarity=0.330 Sum_probs=367.0
Q ss_pred HCCCCCCCCCCCCCCCCEEHHHHHCCCCC---CCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 20666732238877630002443108999---9961677501002223577-7965199999984115545775221025
Q 000459 718 LQRSIPSMVDGLKPGQRKILFCSFKRNFI---KEAKVAQFSGYVSEHSAYH-HGEQSLASTILGMAQDFVGSNNINLLQP 793 (1484)
Q Consensus 718 ~~RaIP~~~DGLKP~QRkIL~~~~k~~~~---~~~KvA~l~G~V~~~~~YH-HGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~ 793 (1484)
.+|||||++||||||||||||+|++++++ +++||||+||+||+ +|| |||+|+|+|||+|||+| |||+|||+|
T Consensus 1 ~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~g--kYHPHGD~SiydaiVrmAQ~f--s~r~pLldg 76 (716)
T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLG--KYHPHGDSACYEAMVLMAQPF--SYRYPLVDG 76 (716)
T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHT--TTSCTTCHHHHHHHHHHTSTT--SCSSCSEEE
T ss_pred CCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHH--HCCCCCHHHHHHHHHHHHHCC--CCCCEEEEC
T ss_conf 9777895001798288799999850088678882465778999887--068956889999999970020--016600526
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCC
Q ss_conf 77876788899876-65351112145778630898995766554-78997357643489775663028864021120589
Q 000459 794 NGQFGTRNQGGKDA-ASARYIFTRLSPITRFLFPKDDDKLLDYL-NEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYI 871 (1484)
Q Consensus 794 ~GnFGsr~~gG~~a-Aa~RYi~~rLs~~~~~lf~~~dd~~l~~~-~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~sT~I 871 (1484)
|||||||+ |++| |||||||||||++++.||+++|+++|+|+ ||||+.+||+||||+|||||||||+||||||||||
T Consensus 77 ~GNFGS~d--gd~a~AA~RYte~rLs~ia~~ll~~~d~~tvdf~~n~Dg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~I 154 (716)
T 1zvu_A 77 QGNWGAPD--DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 154 (716)
T ss_dssp CSCCSSSS--SCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBC
T ss_pred CCCCCCCC--CCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHCCCCCCCCCEECCC
T ss_conf 89877878--9865656676378244999998764273531656488997578023164566888717775213410478
Q ss_pred CCCCHHHHHHHHHHHHCCCCCC-----CC--CCCCCCCCCEEE-------ECCCCCCCEEEEEEEEEEEEECCEEEEEEC
Q ss_conf 9999798999999987399988-----99--762258870899-------813578861999999999980706999823
Q 000459 872 PNYNPRDIVANVRRLLNGEMME-----PM--HPWYRGFGGTIE-------KTASKEAGVTYTVTGIIEEVNETTLRIKEL 937 (1484)
Q Consensus 872 P~hNp~eVi~a~~~~L~~~~~~-----p~--~P~~~Gf~G~I~-------~~~~~g~G~~~~~~G~~e~~~~~~i~ITEL 937 (1484)
|||||.|||+|++++|+|+++. ++ -|||+++ |.|. ..|.+|+| +|++||+|++++ ++|+||||
T Consensus 155 PphNl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptg-G~I~~~~~gI~~aY~tGrG-~i~~rg~~~ie~-~~ivITEl 231 (716)
T 1zvu_A 155 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE-AEIITSRAEIRKIYENGRG-SVRMRAVWKKED-GAVVISAL 231 (716)
T ss_dssp CCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSS-SEECSCTTHHHHHHHHTEE-EEEEECEEEEET-TEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCC-EEEECCCHHHHHHHHCCCC-EEEEEEEEEEEC-CEEEEEEC
T ss_conf 99899999999999855999988999964779989996-1895471477887424892-699999999988-87999968
Q ss_pred CCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCC-CCEEEEEEECC-HHHHHHHHHHHHHHCCCEEECCCCEEEEECCCC
Q ss_conf 88788789999999998128-8543301212588-71399999274-024788999998670561200255078974899
Q 000459 938 PIRRWTQDYREFLESIIDQN-DSFIRGFRQYSDD-TTVDFEVFLSE-ESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKG 1014 (1484)
Q Consensus 938 P~~~~t~~y~e~i~~l~~~~-~~~I~d~~d~s~~-~~v~i~I~lk~-~~~~~~~~~~L~k~tkL~ssis~~Nmvl~d~~G 1014 (1484)
||++|+++|+++|+++++.+ +++|+|++|+|++ ++|||+|++++ +..++.+++.||++|+||++|++ ||++||.+|
T Consensus 232 Py~v~~~~lie~I~~l~~~kki~~I~d~rDes~~~~gvrivI~lk~~~~~~~~vl~~L~k~T~Lq~sf~~-Nm~~l~~~g 310 (716)
T 1zvu_A 232 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDG 310 (716)
T ss_dssp CTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEE-ECEEECTTS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHEEEC-EEEEECCCC
T ss_conf 9877799999999999865997640401314599886799999886678989999999872454430000-068984599
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 62000698999999999999999999999999999999999867877531031436761654379999999739998988
Q 000459 1015 VIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPK 1094 (1484)
Q Consensus 1015 ki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~LenkirFI~~Vi~~~I~i~~k~k~elv~eL~~~gF~~~~~ 1094 (1484)
+ |+|+++++||++|++||+++|+||++|+|+++++++|+|++++.++..+ |.|++++.
T Consensus 311 ~-p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~i-------------DeVI~iIR-------- 368 (716)
T 1zvu_A 311 R-PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNI-------------DEVIEIIR-------- 368 (716)
T ss_dssp C-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-------------HHHHHHHH--------
T ss_pred E-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH--------
T ss_conf 1-6677799999999999999999999999999999999998699998627-------------88899988--------
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHH
Q ss_conf 9853788740678633112369532369894509998707332367999999999999999999999815--905689
Q 000459 1095 NSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKA--TPESLW 1170 (1484)
Q Consensus 1095 ~sk~~~~a~~~~~e~~~~~ee~~~~~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~L~~~--t~~dLW 1170 (1484)
.|.+.. ..++ ..|++++.|++|||+|+|++||++++++|++|++++++++++|+.+ ++..+|
T Consensus 369 ~s~~~k---~~L~-----------~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~ 432 (716)
T 1zvu_A 369 NEDEPK---PALM-----------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 432 (716)
T ss_dssp HSSSHH---HHHH-----------HSTTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HCCCHH---HHHH-----------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 668569---9999-----------862999999999996489986435899999999999999999999867999999
Done!