Citrus Sinensis ID: 000460

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480--

MEIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSEMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERQVLPTTKGNLILLLNATDLLITWLFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQLHL

ccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccEEEEcccccccccEEEcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccHHHHHHHccHHHHHHHHHHHHcccccccccccHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEEccccccEEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccccccccHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccEEccccEEEEEccccccccEEEEEHccccccccccEEEEEEccccccccccHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHEHHHHHHccccccccccccEEcEEcccccEEEccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEccccEEHHHHHHHHHHHHHHHHHccccHHccccccccHHcccccHHcccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHcccccccccccEEEEcHHHHHHccccEHcccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

meidsppdfsppkprdRIVRRLMnigvpeefldysgivnfakndksripelvstilppdeEVAEVIQDAKaknkkvsvgpnmkgrFRESMLWLQWLMFEREPEKVLRKLSkigqrgvcgavwgnndiayrcrtcehdptcaicvpcfqngnhkehdysiiytgggccdcgdvtawkregfcsrhkgaeqiqplpekyansaapVLDALFIYWENKLSLAEsvgqenprasdhVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFvkdairehsddtikkypllstFSVQiftvptltpRLVKEMNLLEMLLGCLREIFdscagddsclQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVqgmnpqkretgihireeneymhlplvldhsianiqpllvdgafssavseetrydfsmykqdigdgdslrhakvgrlsqessvcgamgrsslsastlkaddVIFDAVsdvllphsvTWVAHECLRAMEnwlgvddrsvsvndilspnasrisgsNFVALKKTLSKIKKGKSIFSrlagssevtagiqesgdldnatsmgkeskitisgerdtaswrsagfndsemegecateldnlhvlslcywpditydvssqdvsvhiPLHRLLSLIIQKALRRCygesaasesadtgaenplsavsldffghilggchpygfsafvmehPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGlsnylslnlerpseyepILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVkslprdlskFDQLQEILDAVAMyshpsgfnqgmYSLRWSYWKeldiyhprwssrdlQVAEERYLRFCSVSaltaqlprwtkiyyplesiagiATCKVVLQVIRAVLFYAVftdnptdsrapyGVLLTALHLLALALDVCFqkkksgdqscdiggstpildFASEEIAEGLNNGAGKQSLLSLLVFLMGMykkdgadnfleagnCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLsqslprddtsgsfsasdSEKRKAKARERQAAILEKMKAEQFKFLSSISsniedapksapevtnydaehvseesVQDVCalchdpnsrtpVSYLILLQKSrllsfvdrgspswdqdqwlgkecgtisannmvnqfgtntpssglgvissCQLAQVAEEAVNQfayngkpeeVNSVLEFVKaqfpsemrknmtypdlmkedeecsvaegglknrgnsdsfLLGKYVASISKEMRenasasevsrgdriaaeslvydgfgpidcdgihlsscghavhQGCLDRYVSSlkerqvlpttkgNLILLLNATDLLITWLFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQLHL

meidsppdfsppkprdrIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQdakaknkkvsvgpnmkgrfRESMLWLQWLMFEREPEKVLRKlskigqrgvcgavwGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILspnasrisgsnfvALKKTLskikkgksifsrlagssevtagiqesgdldnatsmgkeskitisgerdtaswRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVsaltaqlprWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHlsqslprddtsgsfsasdsekrkAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFvkaqfpsemrKNMTYPDLMKEDEECSVAEgglknrgnsdsfLLGKYVASISKEMRenasasevsrgdriAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERQVLPTTKGNLILLLNATDLLITWLFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQLHL

MEIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTgggccdcgdVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRklhelllkllGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVAlkktlskikkgksiFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVlltalhllalalDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSASDSekrkakarerqaaILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSEMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERQVLPTTKGnlilllnatdllitwlFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQLHL

*****************IVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTIL***************************GRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLA******************KLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQ**********************************TLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDIL***********************************************************************************ECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYG***************LSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAP*******************************************************************************VQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKA*************************************FLLGKYVA********************IAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERQVLPTTKGNLILLLNATDLLITWLFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQL**

**********************MNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQD***************GRFRESMLWLQWLMFEREPEKV************CGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFC*****************NSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESS*************TLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGV**************************************************AGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGF*QGMYSLRWSYWKELDIYHPRWSSRDLQVA*******************WTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVC**************GSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMY**********AGNCNLSSVIESLLKKFAEIDSRCM*****************************************************************************************DVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWL********************************************************LEFVKAQFPSEMRKNMTYPDL************************************************************FGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERQVLPTTKGNLILLLNATDLLITWLFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQLHL

***********PKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLA**************AERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRR****************NPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHL***************************RQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSEMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKE************GDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERQVLPTTKGNLILLLNATDLLITWLFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQLHL

**********PPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVS*N************SNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKE*************************GECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKK****S***GGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLS****************************AAILEKMK**********************************ESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSW***********************************SCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSEMRKNMTYPDLMKEDEEC*************DSFLLGKYVASISKE********************LVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERQVLPTTKGNLILLLNATDLLITWLFSISQDDLLENVDKVLEWAILTGFALLCFLFESFHYIMQLHL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1482	2.2.26 [Sep-21-2011]
Q6WKZ8		1755	E3 ubiquitin-protein liga	yes	no	0.292	0.247	0.273	1e-29
Q8IWV8		1755	E3 ubiquitin-protein liga	yes	no	0.213	0.180	0.290	2e-28
Q8IWV7		1749	E3 ubiquitin-protein liga	no	no	0.333	0.282	0.230	5e-22
Q9VX91		1824	E3 ubiquitin-protein liga	yes	no	0.213	0.173	0.273	1e-21
Q5U430		1889	E3 ubiquitin-protein liga	no	no	0.275	0.215	0.225	1e-20
O70481		1757	E3 ubiquitin-protein liga	no	no	0.207	0.175	0.257	2e-20
Q6ZT12		1888	E3 ubiquitin-protein liga	no	no	0.206	0.162	0.243	3e-20
O13731		2052	E3 ubiquitin-protein liga	yes	no	0.128	0.092	0.261	2e-14
P91133		2058	E3 ubiquitin-protein liga	yes	no	0.155	0.111	0.249	3e-14
O60152		1958	E3 ubiquitin-protein liga	no	no	0.062	0.046	0.356	3e-13

>sp\|Q6WKZ8\|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2	Back alignment and function desciption

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 233/516 (45%), Gaps = 82/516 (15%)

Query: 682  ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAEN-PLSAVSLDFFGH 740
            I Y VS + VS+H+P+ RLL+ +        +   + SE A    E  PLS +S      
Sbjct: 599  IRYCVSQEKVSIHLPISRLLAGL--------HVLLSKSEVAYKFPELLPLSELS------ 644

Query: 741  ILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELD 800
                         ++EHPLR  V CAQVHAGMWRRNG + ++   +Y  V+   +  + D
Sbjct: 645  ----------PPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKD 694

Query: 801  LFLLQCCAALAPADLYVNRIIERFGLSNYLS-----------LNLERPSEYEPILVQEML 849
            + +LQ   ++   + ++  ++ RF L    S           +  +   +    L++EML
Sbjct: 695  IVMLQTGVSMMDPNHFLMIMLSRFELYQLFSTPDYGKRFSSEVTHKDVVQQNNTLIEEML 754

Query: 850  TLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEIL 906
             LII ++ ER   G+      + +KRE++H+L+I    HS+LVKSLP D +K   ++ ++
Sbjct: 755  YLIIMLVGERFNPGVGQVAATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVI 814

Query: 907  DAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSAL-TAQL 965
            ++VA +  P    +GMY L+    KE ++Y   +S  +   AEE   +    +   TA  
Sbjct: 815  ESVAHFKKPGLTGRGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRENKEDTALP 874

Query: 966  PRWTKIYYPL-ESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALA 1024
            P     + PL  S+  I  C V+L ++  +L +AV       S +   +L   LHL+ +A
Sbjct: 875  PPALPPFCPLFASLVNILQCDVMLYIMGTILQWAVEHHGSAWSES---MLQRVLHLIGMA 931

Query: 1025 LDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGA 1084
            L    Q++K   ++  + G      F +++I++  +      S+L++L  L         
Sbjct: 932  L----QEEKHHLENA-VEGHVQTFTF-TQKISKPGDAPHNSPSILAMLETLQNAPS---- 981

Query: 1085 DNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSAS 1144
               LEA       +I  LLK F  I               +   S S P  +  G+    
Sbjct: 982  ---LEAHK----DMIRWLLKMFNAIKK-------------IRECSSSSPVAEAEGTIMEE 1021

Query: 1145 DS-------EKRKAK-ARERQAAILEKMKAEQFKFL 1172
             S        KRKA+ AR R+  I+ +M   Q  F+
Sbjct: 1022 SSRDKDKAERKRKAEIARLRREKIMAQMSEMQRHFI 1057

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. Plays a critical role in chromatin inactivation and chromosome-wide transcriptional silencing during meiosis via ubiquitination of histone H2A. Binds leucine and is a negative regulator of the leucine-mTOR signaling pathway, thereby controlling cell growth.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q8IWV8\|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1	Back alignment and function description

>sp\|Q8IWV7\|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1	Back alignment and function description

>sp\|Q9VX91\|UBR1_DROME E3 ubiquitin-protein ligase UBR1 OS=Drosophila melanogaster GN=UBR1 PE=2 SV=2	Back alignment and function description

>sp\|Q5U430\|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3	Back alignment and function description

>sp\|O70481\|UBR1_MOUSE E3 ubiquitin-protein ligase UBR1 OS=Mus musculus GN=Ubr1 PE=1 SV=2	Back alignment and function description

>sp\|Q6ZT12\|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2	Back alignment and function description

>sp\|O13731\|UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr11 PE=3 SV=1	Back alignment and function description

>sp\|P91133\|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1 PE=1 SV=2	Back alignment and function description

>sp\|O60152\|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1482
255583117		2073	ubiquitin ligase E3 alpha, putative [Ric	0.943	0.674	0.625	0.0
359482107		2048	PREDICTED: E3 ubiquitin-protein ligase U	0.949	0.687	0.630	0.0
449440333		2099	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.939	0.663	0.594	0.0
449483643		2089	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.939	0.666	0.594	0.0
356523153		2037	PREDICTED: E3 ubiquitin-protein ligase U	0.933	0.679	0.590	0.0
356567933		2036	PREDICTED: E3 ubiquitin-protein ligase U	0.932	0.678	0.584	0.0
224090687		1774	predicted protein [Populus trichocarpa]	0.917	0.766	0.597	0.0
357505675		2105	E3 ubiquitin-protein ligase ubr1 [Medica	0.912	0.642	0.565	0.0
297806169		1996	hypothetical protein ARALYDRAFT_487009 [	0.929	0.689	0.536	0.0
30679594		2006	proteolysis 6 [Arabidopsis thaliana] gi\|	0.921	0.680	0.532	0.0

>gi\|255583117\|ref\|XP_002532325.1\| ubiquitin ligase E3 alpha, putative [Ricinus communis] gi\|223527968\|gb\|EEF30052.1\| ubiquitin ligase E3 alpha, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1759 bits (4556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 920/1472 (62%), Positives = 1112/1472 (75%), Gaps = 74/1472 (5%)

Query: 1    MEIDSPPD-FSPPKPRDRIVRRLMNIGVPEEFLD---YSGIVNFAKNDKSRIPELVSTIL 56
            M+IDSPP+  +P KPRDR++RRL+ +G+ EE+L    Y GIV F  ++ S IPELVS+IL
Sbjct: 1    MDIDSPPETINPIKPRDRVMRRLVQLGIGEEYLQRRYYPGIVAFLMDNPSWIPELVSSIL 60

Query: 57   PPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQ-R 115
            P DEEVAE +Q  K+++KKV   P MK  FRE M+WLQWLMF  EP   L+ LSK+   R
Sbjct: 61   PLDEEVAEALQQNKSESKKVQ-SPTMKRYFRECMVWLQWLMFLGEPATALKSLSKMSTGR 119

Query: 116  GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAW 175
            GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHK+HDYSIIYTGGGCCDCGDVTAW
Sbjct: 120  GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSIIYTGGGCCDCGDVTAW 179

Query: 176  KREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAE 235
            KREGFCS HKGAEQIQPLPE+YANS  PVLDALF  W+ KL  AE++  ENPR+SD V  
Sbjct: 180  KREGFCSSHKGAEQIQPLPEEYANSVGPVLDALFSCWKKKLVSAETICHENPRSSDRVVL 239

Query: 236  RRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLH 295
             +K+ANELT+ VVEMLLEFCK+SESLLSFVS++VIS++GLL+ILVRAE F S+ V RKL+
Sbjct: 240  CKKVANELTYVVVEMLLEFCKHSESLLSFVSRKVISLVGLLEILVRAERFLSEGVARKLN 299

Query: 296  ELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLT 355
            E+LLKLLGEPIFKYEF KVF+SYYP+ V +A++E  D ++KKYPLLSTFSVQI +VPTLT
Sbjct: 300  EMLLKLLGEPIFKYEFGKVFVSYYPLVVHEALKEGGDSSLKKYPLLSTFSVQILSVPTLT 359

Query: 356  PRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVS 415
            PRLVKEMNLL MLLGCL +IF  CAG+D  LQV KW NLYETT RV+ DIRFVMSHA V 
Sbjct: 360  PRLVKEMNLLAMLLGCLGDIFIHCAGEDDRLQVTKWGNLYETTIRVVEDIRFVMSHAIVP 419

Query: 416  KYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLV 475
            K+ T EQ +I + WM+LL+++QGM+P +RE G+HI EENE ++L  VLDHS+ANI  LLV
Sbjct: 420  KHVTREQRDILRTWMRLLSYLQGMSPLRREIGLHIEEENENINLLFVLDHSVANIHSLLV 479

Query: 476  DGAFSSAVSEETRYD-FS-MYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLK 533
            DGAFS+  SE+T  D FS M KQ++ + D +R+AKVGRLSQESSVCG +GRS+  A    
Sbjct: 480  DGAFST--SEDTDDDVFSGMSKQNMSEEDGMRYAKVGRLSQESSVCGVLGRSNQDA---- 533

Query: 534  ADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVA 593
              +V  D++   L+P SV+ + +ECLRA++NWLGVD  S +    LS   +  S SN +A
Sbjct: 534  --EVASDSIYHPLVPSSVSLLMYECLRAIDNWLGVDHASGA----LSSANTSTSNSNILA 587

Query: 594  LKKTLSKIKKGKSIFSRLAGSSE---------VTAGIQESGDLDNATSMGKESKITISGE 644
            LKKT  K +KGKSIFS    S+E           +G+  S D++N  S+G++ KI  SGE
Sbjct: 588  LKKTFLKFRKGKSIFSGFTSSNEDQSRNFFPPANSGLCMSMDVENTKSVGQDCKIMGSGE 647

Query: 645  RDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLI 704
             +TA       ++  MEG  +TE +   +LS   WP+I YDVSSQDVSVHIPLHRLLSL+
Sbjct: 648  PETAK-----SDECLMEGNSSTESEVFRILSSSDWPNIVYDVSSQDVSVHIPLHRLLSLL 702

Query: 705  IQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVF 764
            +QKALRRCYG+     +   G     S++  DFFG +LGGCHP GFSAFVMEHPLR RVF
Sbjct: 703  LQKALRRCYGDPEVRSTTSAGTYTSSSSMYDDFFGRVLGGCHPRGFSAFVMEHPLRNRVF 762

Query: 765  CAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERF 824
            CA+VHAGMWR+NGDAA+ S EWYR+VRWSEQGLELDLFLLQCCAALAPADLYVNRI+ERF
Sbjct: 763  CAEVHAGMWRKNGDAAILSSEWYRSVRWSEQGLELDLFLLQCCAALAPADLYVNRILERF 822

Query: 825  GLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDAT 884
            GLS+Y  L+LE+ SEYEP+LVQEMLTLIIQI+QERRF GLT  E+LKREL+H+L+IGDAT
Sbjct: 823  GLSDYPFLHLEKSSEYEPVLVQEMLTLIIQIIQERRFSGLTPDENLKRELIHKLSIGDAT 882

Query: 885  HSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRD 944
             SQLVKSLPRDLSK+D+LQEILD VA+YS+PSGFNQGMYSLRW YWKELD+YHPRW+SRD
Sbjct: 883  RSQLVKSLPRDLSKYDRLQEILDTVAVYSNPSGFNQGMYSLRWMYWKELDLYHPRWNSRD 942

Query: 945  LQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNP 1004
            LQVAEERY+R+CSVSALT QLPRW KI+ PL+ +A IA CK+VL++IRAVLFYAVF+D  
Sbjct: 943  LQVAEERYIRYCSVSALTTQLPRWMKIHPPLKGVASIANCKMVLKIIRAVLFYAVFSDKL 1002

Query: 1005 TDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAG 1064
            T+ RAP G+L+ ALHLL+L LD+C Q+++ GD S   G S P+L FA EEI EG++ GAG
Sbjct: 1003 TEPRAPDGILIMALHLLSLGLDICLQQREPGDLSLFCGDSIPMLAFAVEEIHEGISYGAG 1062

Query: 1065 KQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEI 1124
            +QSLLSLLV LM M+K+D  DNF E+  CN+SS+IESLLKKFAE+DS C TKLQQLAPE+
Sbjct: 1063 EQSLLSLLVSLMRMHKRDNLDNFSESDGCNISSLIESLLKKFAELDSGCRTKLQQLAPEV 1122

Query: 1125 VSHLSQSLPRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPK 1184
            V HLSQ  P  D     SASDSEKRKAKARERQAAIL KMKAEQ KFLSSI+S  ED  +
Sbjct: 1123 VIHLSQPSPHSDAHSVGSASDSEKRKAKARERQAAILAKMKAEQSKFLSSINSTNEDDLR 1182

Query: 1185 SAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQ 1244
            +  E +N D E   EES QDVC+LCHDPNS+ PVS+LILLQKSRLLS  DRG PSW+Q +
Sbjct: 1183 AGLEESNTDDEQHLEESAQDVCSLCHDPNSKNPVSFLILLQKSRLLSLTDRGPPSWNQAR 1242

Query: 1245 WLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLE 1304
               KE  ++    ++ Q G +  SSGL V SS QL+Q+ + AVN+FA   +P E+ + LE
Sbjct: 1243 RWEKEQVSLMTIKVIEQAGISLSSSGLEVDSSDQLSQLVQNAVNEFAEYAQPGEIINFLE 1302

Query: 1305 FVKAQFPSEMRKNMTYPDLMKE------------------------------------DE 1328
            FV+AQ PS   +N+  P  +K+                                    D 
Sbjct: 1303 FVRAQSPS--LRNIQVPSPLKDGNDRNACSLETLERDYYISIRKEINNHTIFSSSGLKDV 1360

Query: 1329 ECSVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLV--YDGFGP 1386
            + S  EGGLK+     S LLGKY+A+ S+E+ E+ S+SE S  D    ES +  Y+ FGP
Sbjct: 1361 DISAGEGGLKSNRGVSSVLLGKYIAAFSREITEHPSSSENSLDDIAKRESTLQAYEKFGP 1420

Query: 1387 IDCDGIHLSSCGHAVHQGCLDRYVSSLKERQV 1418
             DCDG++LSSCGHAVHQGCLDRY+SSLKER V
Sbjct: 1421 ADCDGVYLSSCGHAVHQGCLDRYLSSLKERFV 1452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359482107\|ref\|XP_002270537.2\| PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449440333\|ref\|XP_004137939.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449483643\|ref\|XP_004156647.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356523153\|ref\|XP_003530206.1\| PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356567933\|ref\|XP_003552169.1\| PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max]	Back alignment and taxonomy information

>gi\|224090687\|ref\|XP_002309059.1\| predicted protein [Populus trichocarpa] gi\|222855035\|gb\|EEE92582.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357505675\|ref\|XP_003623126.1\| E3 ubiquitin-protein ligase ubr1 [Medicago truncatula] gi\|355498141\|gb\|AES79344.1\| E3 ubiquitin-protein ligase ubr1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297806169\|ref\|XP_002870968.1\| hypothetical protein ARALYDRAFT_487009 [Arabidopsis lyrata subsp. lyrata] gi\|297316805\|gb\|EFH47227.1\| hypothetical protein ARALYDRAFT_487009 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30679594\|ref\|NP_195851.2\| proteolysis 6 [Arabidopsis thaliana] gi\|332003074\|gb\|AED90457.1\| proteolysis 6 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1482
TAIR\|locus:2180147		2006	PRT6 "proteolysis 6" [Arabidop	0.925	0.683	0.508	0.0
ZFIN\|ZDB-GENE-081107-29		1730	ubr2 "ubiquitin protein ligase	0.132	0.113	0.338	3.5e-43
UNIPROTKB\|E1BCW1		1756	UBR2 "Uncharacterized protein"	0.203	0.171	0.313	6.2e-43
UNIPROTKB\|D4A9U6		1754	Ubr2 "Protein Ubr2" [Rattus no	0.203	0.172	0.310	1.1e-42
UNIPROTKB\|F1RUT9		1382	UBR2 "Uncharacterized protein"	0.205	0.219	0.298	3.3e-42
UNIPROTKB\|F1P5I1		1737	UBR1 "Uncharacterized protein"	0.165	0.141	0.282	4.9e-42
UNIPROTKB\|J9P5Z7		1755	UBR2 "Uncharacterized protein"	0.203	0.172	0.318	8.9e-42
UNIPROTKB\|E2RHB2		1755	UBR2 "Uncharacterized protein"	0.203	0.172	0.318	2.3e-41
MGI\|MGI:1861099		1755	Ubr2 "ubiquitin protein ligase	0.203	0.172	0.310	3.9e-41
UNIPROTKB\|E1C1D2		1755	UBR2 "Uncharacterized protein"	0.165	0.140	0.297	5.2e-41

TAIR\|locus:2180147 PRT6 "proteolysis 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3378 (1194.2 bits), Expect = 0., P = 0.
 Identities = 730/1436 (50%), Positives = 929/1436 (64%)

Query:    12 PKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKA 71
             P   D ++ RL ++GVP+++    G+V F + + ++I ELVS +LP D++V   +++A+ 
Sbjct:    13 PSSHDLVIERLASVGVPKKYRSKRGLVEFVRANPAKISELVSALLPTDDDVKLGLKEARE 72

Query:    72 KNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIG--QRGVCGAVWGNNDIAY 129
             + +K +V P MK RFRESM  LQWLMF+ EP+  LR L+K+   QRGVCG+VWG NDIAY
Sbjct:    73 RPRKSAVSPTMKKRFRESMNMLQWLMFQDEPDVSLRNLAKLNLDQRGVCGSVWGQNDIAY 132

Query:   130 RCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTXXXXXXXXXVTAWKREGFCSRHKGAEQ 189
             RCRTCE+DPTCAICVPCFQNG+H  HDYSIIYT          TAWK +GFCS HKG+EQ
Sbjct:   133 RCRTCENDPTCAICVPCFQNGDHNSHDYSIIYTGGGCCDCGDETAWKPDGFCSNHKGSEQ 192

Query:   190 IQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVE 249
             I+PL E  ANS  P+LDALF  W NKL  AES GQ+  R++D +   +K++NELTF VVE
Sbjct:   193 IRPLSENLANSVGPILDALFTCWNNKLLSAESSGQKGARSNDTLVILQKMSNELTFIVVE 252

Query:   250 MLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRXXXXXXXXXXGEPIFKY 309
             MLLEF  +SESLLSFVS+R+IS  GLL IL++AE F    V++          G+P+FK 
Sbjct:   253 MLLEFSMSSESLLSFVSRRIISSSGLLSILLKAERFLDQDVMKKLHDLFLKLIGDPVFKC 312

Query:   310 EFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLL 369
             EFAK F+SYYPV + + +++ +D+  KKYPLLSTFSVQI TVPTLTP LVKEMNLL MLL
Sbjct:   313 EFAKAFVSYYPVVISEVVKQGTDNAFKKYPLLSTFSVQILTVPTLTPFLVKEMNLLAMLL 372

Query:   370 GCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAW 429
             GCL +IF SC+G+D  LQ  K   L ET+ RVIGD++FVMSHA VSKYATHE   +S++W
Sbjct:   373 GCLSDIFVSCSGEDGLLQATKLERLCETSERVIGDLKFVMSHAIVSKYATHEHRELSRSW 432

Query:   430 MKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRY 489
             + LLTF QGMNP KRETGI I EEN+YMHL  VL HSIA I  LLV+G +S+A  EE   
Sbjct:   433 LTLLTFAQGMNPLKRETGIPIDEENDYMHLFFVLGHSIAVIHSLLVNGTYSAASDEEIEN 492

Query:   490 DFSMYKQ-DIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLP 548
             D +  ++ D  DGD  R+AKVGRLS E SVC A+  SS   S++ ++    D     LLP
Sbjct:   493 DRNAKEEFDKCDGDGERYAKVGRLSHEDSVCTAIVSSSSFDSSMASEVHKIDPFH-ALLP 551

Query:   549 HSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASR-ISGSNFVAXXXXXXXXXXXXXX 607
              S  ++  ECL+ +E  LG D+        LS ++ R I  S                  
Sbjct:   552 SSAIYLIRECLKVLETCLGNDEGISKFLCKLSSSSGRNIPESKMSWPRRDLLNVETGGSV 611

Query:   608 FSRLAGSS-EVTAGIQE-SGDLDNATSMGKESKITISGERD-TASWRSAGFNDSEMEGEC 664
              S LA SS + + G+    GD+    S+          + D TA  +    N +++    
Sbjct:   612 SSNLASSSRDPSTGLSPLCGDIQTNLSLDNVCGPYGVVQTDVTADSKRVSCNSADLTKNA 671

Query:   665 ATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADT 724
             +     L +L LC WPDI YDVSSQ +SVH+PLHRLLSL+IQKALR CYGESA+      
Sbjct:   672 S----GLRILGLCDWPDIHYDVSSQAISVHLPLHRLLSLLIQKALRICYGESASYNGVSI 727

Query:   725 GAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSC 784
               E P +    DFF  ++G  HP GFSA VMEH L+IRVFCAQV AGMW++NGD+AL SC
Sbjct:   728 SHEIPHA----DFFSSVIGDFHPCGFSALVMEHVLQIRVFCAQVIAGMWKKNGDSALVSC 783

Query:   785 EWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPIL 844
             EWYR+VRWSEQGLELDLFLLQCCAALAPAD YV++++ RFGLS+YLSLN +  +EYEP+L
Sbjct:   784 EWYRSVRWSEQGLELDLFLLQCCAALAPADSYVDKLLSRFGLSSYLSLNPDITNEYEPVL 843

Query:   845 VQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQE 904
             VQEML L+IQILQERRFCGL+TAESL+RE++ +LA GD THSQLVKSLPRDLSK D+LQE
Sbjct:   844 VQEMLGLLIQILQERRFCGLSTAESLRREIIFKLATGDFTHSQLVKSLPRDLSKSDELQE 903

Query:   905 ILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQ 964
             +LD V++Y +PSG NQG YSL+ S WKELD+YHPRW SRDLQ AEER+ R+C VSALT Q
Sbjct:   904 VLDDVSVYCNPSGMNQGKYSLQSSCWKELDLYHPRWQSRDLQSAEERFSRYCGVSALTTQ 963

Query:   965 LPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVXXXXXXXXXXX 1024
             LPRW  IY PL+ +A I TCK   Q+I + L+YA+ +     SRAP GV           
Sbjct:   964 LPRWRMIYPPLKGLARIGTCKATFQIISSALYYALQSGTSVKSRAPDGVLITALQLLSLS 1023

Query:  1025 XDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGA 1084
              D+C Q+++S  Q C +  S PIL+ A  EI  G+  G  K+SLLSLLV LM     DG 
Sbjct:  1024 LDICTQQRQSNSQDCCLENSIPILELAGLEII-GIAQGTEKESLLSLLVSLMKTRMGDGR 1082

Query:  1085 DNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSAS 1144
               F E G+CN+SS I +LLKKF+ IDS CM  LQ LAPE+V    QS    D   S S S
Sbjct:  1083 HQFPEPGSCNISSWIGNLLKKFSAIDSVCMNLLQSLAPEVVG---QS--GFDKVMSGSTS 1137

Query:  1145 DSXXXXXXXXXXXXXILEKMKAEQFKFLSSISSNIEDA-PKSAPEVTNYDAEHVSEESVQ 1203
             D              I+ KMKAEQ KFLS++SS+++D  P+S  E ++   EH SE +V+
Sbjct:  1138 DEKRKAKAKERQAA-IMAKMKAEQSKFLSTLSSSMDDDDPRSEFETSDSVMEHDSEIAVR 1196

Query:  1204 DVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFG 1263
             +VC+LCHDP+S+ PVS+LI LQKS+LLSFVDRG PSWDQ     K+     A +++    
Sbjct:  1197 EVCSLCHDPDSKDPVSFLIFLQKSKLLSFVDRGPPSWDQCPQSEKKISVDGAPDLLRM-- 1254

Query:  1264 TNTPSSGLGVISSCQLAQVAEEAVNQFAY-----------NGKPEEVNS----------- 1301
              N  S  L  ISS  + Q++++ +++ A            NG+ E+ +S           
Sbjct:  1255 -NASSDSLR-ISSPLMLQLSDDTISESANMIESIKARLIGNGQTEKRSSDGRGKDESNME 1312

Query:  1302 VLEFVKAQFPSEMRKNMTYPDLMKEDEECSVAEG-GLKNRGNSDSFLLGKYVASISKEMR 1360
              LE    Q      +NM    L + D +   AE    KN     S L G++      ++R
Sbjct:  1313 SLEIAMYQTVRNKIENMINQSLTRVDHQPHEAENCSEKNSVGGPSTLQGRF-----PDIR 1367

Query:  1361 ENASASEVSRGDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKER 1416
                ++     G          DGF PIDCDG++LSSCGHAVHQ CL+RY+ SLKER
Sbjct:  1368 SRQTSRRPDAGS---------DGFHPIDCDGVYLSSCGHAVHQSCLERYLKSLKER 1414

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0006723 "cuticle hydrocarbon biosynthetic process" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0050994 "regulation of lipid catabolic process" evidence=IMP

ZFIN\|ZDB-GENE-081107-29 ubr2 "ubiquitin protein ligase E3 component n-recognin 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BCW1 UBR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A9U6 Ubr2 "Protein Ubr2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RUT9 UBR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P5I1 UBR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P5Z7 UBR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHB2 UBR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1861099 Ubr2 "ubiquitin protein ligase E3 component n-recognin 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C1D2 UBR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1482
pfam02207		71	pfam02207, zf-UBR, Putative zinc finger in N-recog	2e-30
smart00396		71	smart00396, ZnF_UBR1, Putative zinc finger in N-re	4e-22

>gnl\|CDD\|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box)	Back alignment and domain information

 Score =  114 bits (288), Expect = 2e-30
 Identities = 38/70 (54%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAW 175
           VCG V+ +    YRC TC  DPTC IC  CF    HK HD   +++  GGCCDCGD  AW
Sbjct: 2   VCGYVFKSGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKRGGCCDCGDPEAW 61

Query: 176 KREGFCSRHK 185
           K+EGFC  HK
Sbjct: 62  KKEGFCKLHK 71

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71

>gnl\|CDD\|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1482
KOG1140		1738	consensus N-end rule pathway, recognition componen	100.0
KOG1140		1738	consensus N-end rule pathway, recognition componen	99.86
smart00396		71	ZnF_UBR1 Putative zinc finger in N-recognin, a rec	99.8
PF02207		71	zf-UBR: Putative zinc finger in N-recognin (UBR bo	99.75
KOG1139		784	consensus Predicted ubiquitin-protein ligase of th	98.84
PF10390		284	ELL: RNA polymerase II elongation factor ELL ; Int	97.21
KOG1777		625	consensus Putative Zn-finger protein [General func	95.86
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	91.89
KOG1139		784	consensus Predicted ubiquitin-protein ligase of th	91.48
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	90.16
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	86.91
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	86.67
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	85.55
KOG4796		604	consensus RNA polymerase II elongation factor [Tra	85.4
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	83.31
KOG2752		345	consensus Uncharacterized conserved protein, conta	81.74
cd02344		45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	81.56

>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=4.3e-87  Score=858.12  Aligned_cols=785  Identities=22%  Similarity=0.310  Sum_probs=554.1

Q ss_pred             HhcccCCCHHHHHHHHHHHH-HhhCChhHHHHHHHHHHhhhHHHHHHHHHhccccccccCCcccceeeecccCCCchHHH
Q 000460          280 VRAEMFSSDVVVRKLHELLL-KLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRL  358 (1482)
Q Consensus       280 l~~~~~l~K~~r~~Lh~L~l-sLL~d~efK~~FA~~Fv~~Y~~i~~~fl~dd~d~~~~~~s~v~sLSVQLFTVPSLA~~L  358 (1482)
                      +..+..+||..|..++.++. .+-++.+||+.||.+|+.+|..+..+|+..|++.   ..+.| .++||+||+|++|..+
T Consensus       369 l~~d~~~~kr~r~~l~k~~~~~~~~~~~~k~~~~~~~~~~y~~~~~~~~~~d~e~---~~~vi-~~~vqf~t~~~~a~~~  444 (1738)
T KOG1140|consen  369 LLFDNRYWKRLRKDLQKVIIPTFASSNLYKPIFAQQFVEHYNSITRDFAYMDREP---DLSVI-ELSVQFFTCPSLAKNI  444 (1738)
T ss_pred             HHHHHHHHHHHHHHHhhcceeehhcchHHHHHHHHHHHHHHHHHHHHHHhhcCCc---chhhH-hheeeeecCcHHHHHh
Confidence            33444567889999999999 6778999999999999999999999999998874   33545 9999999999999999


Q ss_pred             HHhhcHHHHHHHHHHHHhhhhcCCCCccee---c-------ccccccchhhhHHhhhhhhhcchhHhHHHhhhchhHHHH
Q 000460          359 VKEMNLLEMLLGCLREIFDSCAGDDSCLQV---A-------KWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKA  428 (1482)
Q Consensus       359 V~E~nLL~iLl~tl~~~~~~~~~~~~~l~~---~-------~~~~~~~~~~~I~~DLrYvLsh~~Va~~l~~~~~~l~~~  428 (1482)
                      +....++..+..++..++..+. .++...+   -       +.....+|.+..+.|+ +.+.+|.     +..++..+..
T Consensus       445 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~r~l~~~~~l-~~~~~~~-----~~~~~~~~~~  517 (1738)
T KOG1140|consen  445 VENQSFLDIVWSIIDIFKEFNK-VEGGVLIDIRVQKSNLLKRYSISFRRTLYTFEDL-SKVHDPN-----IPLRPKEFIS  517 (1738)
T ss_pred             hhhccchHHHHHHHHHHHHhcc-cccceecceeeeechhhhHHHHHHHHHHHHHHHh-hccCCcc-----ccccHHHHHH
Confidence            9999877776666655543333 3332211   1       1122357777788888 7777766     2358899999


Q ss_pred             HHHHHHHhcCCCcccccccCceeeeCCceehhhhhhhhHHhhhhhhhhcccccccccccccccccccccCCCCCcccccc
Q 000460          429 WMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAK  508 (1482)
Q Consensus       429 ~l~lL~~mQGMnp~kRq~~~HVEyE~e~w~~AF~Le~~la~i~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (1482)
                      ++.++..||||.|++|+.++||++|++ |+.+|.+-.++..++++++.||.....                         
T Consensus       518 ~l~~~~v~qg~~~lkr~~~ehv~~e~~-~~~~~~~v~~~t~~~s~i~~~~~~~ep-------------------------  571 (1738)
T KOG1140|consen  518 LLLLLKVFQGVDPLKREELEHVEVEKE-WENFFSLVEYLTAIYSMIQSLVKTSEP-------------------------  571 (1738)
T ss_pred             HHHHHHHhCCccHHHHHHhhhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------
Confidence            999999999999999999999999997 999999999999999999888766531                         


Q ss_pred             ccccccccccccccCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHhhhcCCCCcccccccCCCCcccccC
Q 000460          509 VGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISG  588 (1482)
Q Consensus       509 v~r~~~e~s~~~~~~~~~~~~~~~v~e~~~~~~~~~~~l~~~l~~l~~~cl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  588 (1482)
                                              +.                 ..++..|..++.....     .     +       .+
T Consensus       572 ------------------------~~-----------------~~~~~~l~~~~~r~~~-----s-----~-------~~  593 (1738)
T KOG1140|consen  572 ------------------------VK-----------------DSVYKKLLEAAIRIHP-----S-----L-------TG  593 (1738)
T ss_pred             ------------------------hh-----------------hhHHHHHHHHHhhccc-----c-----c-------Cc
Confidence                                    00                 0112223333322110     0     0       00


Q ss_pred             cchhhhHhhhhhhcccccccccccCCccccccccccCCCccccccCccccccccCccccccccccCCCCccccccccccc
Q 000460          589 SNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATEL  668 (1482)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1482)
                      ...  +..+                                                .|              ++     
T Consensus       594 ~~~--l~~~------------------------------------------------i~--------------~~-----  604 (1738)
T KOG1140|consen  594 SES--LTYT------------------------------------------------IC--------------GE-----  604 (1738)
T ss_pred             cce--eeeh------------------------------------------------hh--------------hh-----
Confidence            000  0000                                                11              11     


Q ss_pred             ccccccccCccCceeeeccCCcceeechHHHHHHHHHHHHHhhhhcccccccccccCCCCCccccchhhhhhccCCCCCC
Q 000460          669 DNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPY  748 (1482)
Q Consensus       669 ~~~~~~~~~~~~~i~fdVs~~~VSfH~PLhr~Ls~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  748 (1482)
                               ...++.|+|+.++||||+|+.|+|+.+++.....                   ++...+.+ ..+.+++. 
T Consensus       605 ---------S~e~i~f~v~~~~~sv~~p~~~~l~~l~~~~~s~-------------------v~~~~d~~-~~~~~~~n-  654 (1738)
T KOG1140|consen  605 ---------SHETINFSVSQERVSVSNPVSRLLAFLIELSCSS-------------------VVSLKDAY-ERLEDCSN-  654 (1738)
T ss_pred             ---------hHhHhhhccccccceeeccHHHHhhhhhhcccch-------------------hhhcchhh-hhHhhhcc-
Confidence                     1146899999999999999999999998532110                   00111111 11122221 


Q ss_pred             ccchhhhcccHHHHHHHHHHHhCccccccHHHhHHHHHhccccccccccchhhHHHHHHHhccChHHHHHHHHHHhcccc
Q 000460          749 GFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSN  828 (1482)
Q Consensus       749 ~~~~~l~e~PLR~~Vl~AQI~AGmWVRNG~sl~~Q~~~Y~~~~~re~~~d~DlfLLQ~~asl~dp~~fl~~il~RF~L~~  828 (1482)
                        ...|.|||||++|++|||.+|||||||.++.+|+.+|++.+||+++|++||+++|.++++.||++|+.++++||+|.+
T Consensus       655 --~~~i~e~~lr~~Vl~aqid~~~w~rNG~si~~q~~~y~~~~~r~~~y~~DI~~~Q~~la~~d~~~~l~~~l~r~~L~~  732 (1738)
T KOG1140|consen  655 --FLAISEHSLRVLVLCAQIDVGFWVRNGFSILHQAAYYKNNPCRNESYDRDILMLQTGLAMEDPNRFLFTILSRFELLD  732 (1738)
T ss_pred             --chhhcccchhheeeeeecceeeEeecCcchhhhhHhhcCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence              256899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCc-h---hHHHHHHHHHHHHHhhcccccCC---ChHHHHHHHHHHHHhcCCCChHHHHHhCCCCCCCcch
Q 000460          829 YLSLNLERPSEY-E---PILVQEMLTLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQ  901 (1482)
Q Consensus       829 w~~~~~~~~~~y-~---~~lvEE~L~lLI~LltER~~~g~---t~~e~lrrEIIh~Lc~~p~t~SeL~~~lpe~~~~~~~  901 (1482)
                      |++|.......+ +   ..|+|+|+.+||.|++||...|+   +..+.+|+||||+||++|++||+|++.+|++++++..
T Consensus       733 w~~g~~~~~~~d~~~~i~~~~ee~l~lii~ll~Er~~~~~~kv~~~d~~k~~iIh~L~~~~lays~lv~s~~~dl~~~l~  812 (1738)
T KOG1140|consen  733 WFTGEVDYQSNDTEDTISFMIEEFLALIILLLTERSYFGSSKVRRMDIIKSEIIHILCFKPLSYSQLVRKIPHDLTKTLS  812 (1738)
T ss_pred             HhcCCCccccccHHHHHHHHHHHHHHHHHHHHHheeecccccccHHHHHHHHHHHHHHhcchhHHHHHHhchhhhhhccc
Confidence            999986443322 2   37999999999999999997554   5778999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCC-CcceeEehhhhhccccccccccCchhHHHHHHHHHH--hhcccccccCCCCCccCCCc----
Q 000460          902 LQEILDAVAMYSHPSGF-NQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLR--FCSVSALTAQLPRWTKIYYP----  974 (1482)
Q Consensus       902 fe~iL~eVA~fk~P~g~-~~G~Y~LK~e~~~e~DPy~~~y~~~d~q~Aeer~~r--~~k~~~~~~~~P~~~~~~~p----  974 (1482)
                      ||.++++||+|++|.++ +.|+|+||++||+++||||+||+++++.+++...++  ..+.......+|+..|.+-+    
T Consensus       813 ~d~~~e~Va~~~~p~~~~~~gvf~lK~~~~~~~dpy~~~~s~s~q~~se~~~~k~~~~~~k~~~A~~~~i~~~~~~ll~~  892 (1738)
T KOG1140|consen  813 FDEALEEVAVFKKPKGLADNGVFVLKESYYDEVDPYYKHLSKSEQSESEATIRKSRLAKKKDVIALVPPILPKFIKLLKK  892 (1738)
T ss_pred             chHHHHHHHhhccCCccccceEEEechhhhhhcCchhhhhhHhHHhhhhHHHHHHHHHHhhccccccCCCcHHHHHHHHH
Confidence            99999999999999999 789999999999999999999999999888765543  22211111222322233222    


Q ss_pred             -cchhhhccccHHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHH-HHHHHhhhhhhcccCCCCCCCCCCCcccchhh
Q 000460          975 -LESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHL-LALALDVCFQKKKSGDQSCDIGGSTPILDFAS 1052 (1482)
Q Consensus       975 -f~~i~~il~s~~~~~ii~~vL~~al~~~~~s~s~~~E~lL~~aLHL-l~laL~~~~~e~~~~~~s~~~~~~~p~~~~~~ 1052 (1482)
                       +.++.+.....+|-.||+.++.++.+.       .++.++..++|+ ++.|++++..--              .+++..
T Consensus       893 ~~~~L~~~t~~~~~~~ii~r~~~~~~~~-------~s~~~l~~~~~~ihG~~~~~~l~~~--------------~~~~~~  951 (1738)
T KOG1140|consen  893 GADILGAAVRLTVFGLIIYRTLEHCLFM-------ESSTLLSKVLHLIHGIALNEELINM--------------KFAFTQ  951 (1738)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc--------------cccccc
Confidence             244555555666677777777777654       347899999955 499998653211              011100


Q ss_pred             HHHHhhccCCCCcccHHHHHHHHHhhhhccCCccccccccCcchhHHHHHHHHHHHhhHHHHHHHhhhchhhhccccCCC
Q 000460         1053 EEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSL 1132 (1482)
Q Consensus      1053 ~~~~~~~~~~~~~~SllsLL~~L~~~~~~~~~d~~~e~~~~~i~~iI~~LL~kf~~v~~~c~~~l~~~~p~~~~~l~e~~ 1132 (1482)
                      .     .. .....+.+.+++.+..++....+           +.++.++++.|..+..     .+...|++. +.... 
T Consensus       952 ~-----~e-~~~~e~gl~~~e~lv~~~~~~~~-----------~~~~~v~~~l~~~~~~-----~~~n~~ea~-~~~~~- 1007 (1738)
T KOG1140|consen  952 K-----TE-SIAREKGLSLYESLVRKPDSLVH-----------GKIIEVIVELFESLIK-----SRANDPEVA-NDEKD- 1007 (1738)
T ss_pred             c-----cc-ccccccchhhHHHhhhcchhhcC-----------CcceeeeHHHHhhhhh-----hhcCCcccc-ccccc-
Confidence            0     00 12344567778888877654432           4678888888866543     333444332 11100 


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccCCCCcccc--------------c
Q 000460         1133 PRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHV--------------S 1198 (1482)
Q Consensus      1133 ~~~~~~~~~~~sE~EkKKk~AkeRQaKIMAQmkaQQksFL~nn~~~~de~d~~~~e~~~~d~~~~--------------~ 1198 (1482)
                      .....+.+..+.+.+|||++|++||+|+||||+.||.+||++|.++.|+++...++.........              .
T Consensus      1008 ~~~~~~~s~~~~e~~rk~rlA~~r~~k~m~k~s~qq~kfm~~~e~e~d~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~ 1087 (1738)
T KOG1140|consen 1008 KKEKQSVSLDEEEKERKKRLARERQKKLMAKFSNQQTKFMAENEDEFDEQENQTPSSGSKTYEEEDFTCALCQDNSCTDF 1087 (1738)
T ss_pred             cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCcccccCccccccchhhhhccchhhhccchhcc
Confidence            01122344555667899999999999999999999999999997665554332111110000000              0


Q ss_pred             ccc--------cCCceeecCCCCC-----CCCEEEEEEeecccccccccCCCCCccccccCCcccccccccccccCCCCC
Q 000460         1199 EES--------VQDVCALCHDPNS-----RTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTN 1265 (1482)
Q Consensus      1199 ~e~--------~~~tCILCqE~~s-----~~pfG~lalVQ~SsvL~~~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 (1482)
                      .+.        ...+|++|++..+     .++....+|+|+|+..+          .+.-..+          ..+.|+.
T Consensus      1088 ~~~~~~~~~~~~~~~~~i~~e~e~~~~~~~~~~v~~~f~~~s~~~s----------d~l~~p~----------~~~~~~~ 1147 (1738)
T KOG1140|consen 1088 QVKPASHLVKPIFRECIICDENEDVPNWDGRYSVSSAFAQKSDDVS----------DALTEPG----------SLSCGTV 1147 (1738)
T ss_pred             ccccchhhhcccccccccCChhccCCCccccchhhhHhhhhccccc----------ccccCCC----------CCcccce
Confidence            000        0467888887532     46777778888887776          1111111          2378899


Q ss_pred             CCCCCCCccchhHHHHHHHHHHHhh-hhcCCCcchhhHHHHhhccCCcccccCCC---CCCCccccchh
Q 000460         1266 TPSSGLGVISSCQLAQVAEEAVNQF-AYNGKPEEVNSVLEFVKAQFPSEMRKNMT---YPDLMKEDEEC 1330 (1482)
Q Consensus      1266 ~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 1330 (1482)
                      .++|+|  .||.+||+.+-+|.+-. ..+..+..-..-   .++.+||++|++.+   .|.....++..
T Consensus      1148 ~s~c~h--~mh~~c~~~~~~a~r~~~n~~~~~l~~~~s---e~~l~lCp~c~slsn~~lp~~~~~~~~~ 1211 (1738)
T KOG1140|consen 1148 LSSCGH--HMHYGCFKRYVQAKRFRENARTAPLCQHYS---ENGLFLCPLCKSLSNVSLPMFLPPELLL 1211 (1738)
T ss_pred             eeccCC--cchHHHHHHHHHHHHHHHHhhhcCcccccc---cCCcccCCchHhhhhccCCcCCchhhhc
Confidence            999998  69999999999999554 333333443333   78889999999988   34355555554

>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1139 consensus Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10390 ELL: RNA polymerase II elongation factor ELL ; InterPro: IPR019464 ELL is a family of RNA polymerase II elongation factors	Back alignment and domain information

>KOG1777 consensus Putative Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1139 consensus Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>KOG4796 consensus RNA polymerase II elongation factor [Transcription]	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]	Back alignment and domain information

>cd02344 ZZ_HERC2 Zinc finger, ZZ type	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1482
3ny1_A		77	Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Liga		2e-08
3ny2_A		75	Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase L		3e-07

>pdb|3NY1|A Chain A, Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Ligase Length = 77

Back alignment and structure

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI-IYTXXXXXXXXXVTAW 175
           +CG V+ + +  Y CR C  DPTC +C+ CFQ+  HK H Y +   T           AW
Sbjct: 7   LCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVHKNHRYKMHTSTGGGFCDCGDTEAW 66
Query: 176 KREGFCSRHK 185
           K   FC  H+
Sbjct: 67  KTGPFCVNHE 76

PyMOL of 3ny1

>pdb|3NY2|A Chain A, Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase Length = 75

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1482
3ny3_A		75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	4e-34
3nis_A		82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	2e-32
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2doa_A		104	RNA polymerase II elongation factor ELL; C19ORF17,	2e-06
2e5n_A		100	RNA polymerase II elongation factor ELL2; ELL_N2 d	5e-06

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Length = 75	Back alignment and structure

 Score =  125 bits (314), Expect = 4e-34
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 113 GQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCG 170
           G  G +CG V+   +  Y CR C  DPTC +C+ CF    H++H Y +  + GGG CDCG
Sbjct: 1   GPLGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCG 60

Query: 171 DVTAWKREGFCSRHK 185
           D  AWK   +C +H+
Sbjct: 61  DTEAWKEGPYCQKHE 75

PyMOL of 3ny3

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Length = 82	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81 Length = 104	Back alignment and structure

>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1482
d2doaa1		91	a.4.5.81 (A:8-98) RNA polymerase II elongation fac	2e-21

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (217), Expect = 2e-21
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 868 ESLKRELVHRLAIGDATHSQLVKSLPRDLSKF---DQLQEILDAVAMYSHPSGFNQGMYS 924
              +  ++H LA+     ++L+  L +D       D L  +L  VA  S       G  +
Sbjct: 4   RPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCT 59

Query: 925 LRWSYWKELDIYHPRWSSRDLQVAEERYLR 954
           L+   +K++    P +S  D Q+ +   +R
Sbjct: 60  LQDCMYKDVQKDWPGYSEGDQQLLKRVLVR 89

PyMOL of d2doaa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1482
d2doaa1		91	RNA polymerase II elongation factor ELL {Human (Ho	99.83
d2bbya_		69	DNA-binding domain from rap30 {Human (Homo sapiens	85.36

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-21  Score=153.98  Aligned_cols=83  Identities=24%  Similarity=0.337  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC---CHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCHHH
Q ss_conf             8999999998028998689987199788894---2099999997044599988864068503121004665654582369
Q 000460          869 SLKRELVHRLAIGDATHSQLVKSLPRDLSKF---DQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL  945 (1482)
Q Consensus       869 ~lrrEIIh~Lc~~p~t~SeL~~~ipe~~~~~---~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~DPy~~~y~~~~~  945 (1482)
                      .+|+||||.||++|++||+|++.||+++...   ..|+.||++||+|++|    .|+|+||++||+|+|||||||+++|+
T Consensus         5 ~lR~~iIH~La~~p~~~sEL~~~l~~d~~~~~d~~~l~~iL~~Va~~~~~----~g~Y~LK~~~~~Evdp~~~~Ys~~dr   80 (91)
T d2doaa1           5 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ   80 (91)
T ss_dssp             CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCC----CCEEEEHHHHHHHCCCCCCCCCHHHH
T ss_conf             26999999998288988999999886235510488999999998414578----86674279999671766789899999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999874
Q 000460          946 QVAEERYLRF  955 (1482)
Q Consensus       946 q~Aeer~~r~  955 (1482)
                      |.+++.+.|.
T Consensus        81 q~~~~~l~rk   90 (91)
T d2doaa1          81 QLLKRVLVRK   90 (91)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999851

PyMOL of d2doaa1

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure