BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000462
(1482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
+D + + C +CK G LLCCD CP++YH C+ + +P G+W CP C
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
N DEC +C+ G L+CCDGCP A+H C+ + +P G W C C
Sbjct: 7 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPEC 374
+D + + C +CK G LLCCD CP++YH C+ A VP+G+W CP C
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRC 53
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCV--GVANVPEGDWFCPEC 374
+ D C +C+ G ++ CD CP AYH C+ + PEG W CP C
Sbjct: 10 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
N DEC +C+ G L+CCDGCP A+H C+ + +P G W C C
Sbjct: 4 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 49
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 328 NDWNSDECCLCKMDGSLLCCDGCPAAYHSKC--VGVANVPEGDWFCPEC 374
+D N D C +C+ G LLCC+ CP +H C + + P GDW C C
Sbjct: 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 331 NSDECCLCKMDGS------LLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKP 381
+ D C MDG +L CD C A H +C GV +PEG W C C R +P
Sbjct: 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 70
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKC--VGVANVPEGDWFCPECALDRHKP 381
N D C +C+ G LLCC+ CP +H C + N P G+W C C D KP
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCR-DLSKP 54
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
+ D C +C+ G LL CD C YH C+ + +P+G W CP C
Sbjct: 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 313 ISAGSCLTEEVVDDANDWNSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEG 367
++ GS +V+D D N CLC G ++ CD + +H CVG+ P G
Sbjct: 16 VTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRG 75
Query: 368 DWFCPECA 375
WFCP C+
Sbjct: 76 KWFCPRCS 83
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 331 NSDECCLCKMDGS------LLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMK 384
+ D C MDG +L CD C A H +C GV +PEG W C C R +P ++
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALE 82
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 329 DWNSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEGDWFCPECALDR 378
D N CLC G ++ CD + +H CVG+ P G WFCP C+ +R
Sbjct: 6 DPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 329 DWNSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPEC 374
D N CLC G ++ CD CP +H CVG+ + P+G W+CP+C
Sbjct: 7 DPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 57
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 341 DGS-LLCCDGCPAAYHSKCVGVANVP--EGDWFCPECA 375
DGS ++ CD C YH CVG+ P E WFCP+CA
Sbjct: 29 DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCA 66
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 331 NSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEGDWFCPECALDR 378
N CLC G ++ CD + +H CVG+ P G WFCP C+ +R
Sbjct: 3 NEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 55
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 39.7 bits (91), Expect = 0.014, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 331 NSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECALDR 378
N CLC G ++ CD CP +H CV + P+G WFCP C ++
Sbjct: 7 NEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQEK 59
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 327 ANDWNSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECALD 377
A D N CLC G ++ CD CP +H CV + P+G W+CP+C D
Sbjct: 5 AIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCV--GVANVPEGDWFCPEC 374
+ D C +C+ G LL CD C YH C+ + +P+G W CP C
Sbjct: 8 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 38.5 bits (88), Expect = 0.025, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 335 CCLCKMDGSLLCCDGCPAAYHSKCV--GVANVPEGDWFCPECAL 376
C D LL CDGC YH C+ + +P G W CP+C L
Sbjct: 22 CSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 37.4 bits (85), Expect = 0.071, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 335 CCLCKMDGS---LLCCDGCPAAYHSKCVGVA--NVPEGDWFCPEC 374
C +C+ G L+ CD C A+H C+ A VP+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 324 VDDANDWNSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEGDWFCPECALDR 378
+D D N CLC G ++ CD + +H CVG+ P G WFCP C+ +R
Sbjct: 1 MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
Query: 379 HK 380
K
Sbjct: 61 KK 62
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 354 YHSKCVGVANVPEGDWFCPECALDRHK 380
+H CVG+ P G WFCP C+ +R K
Sbjct: 36 FHFACVGLTTKPRGKWFCPRCSQERKK 62
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 336 CLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECAL------DRHK 380
C+C G ++ CD CP +H CVG+ P+G W+CP+C RHK
Sbjct: 9 CICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGSRHK 64
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 345 LCCDGCPAAYHSKCVG--VANVP-EGDWFCPECALD 377
L CD C A+H C+ +++VP E +W+CPEC D
Sbjct: 190 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 345 LCCDGCPAAYHSKCVG--VANVP-EGDWFCPECALD 377
L CD C A+H C+ +++VP E +W+CPEC D
Sbjct: 206 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 241
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 331 NSDECCLCKMDGSLLCCD--GCPAAYHSKCVGVANVPEGDWFCP 372
+ D C C G L+ CD CP AYH C+ + P G W CP
Sbjct: 14 HEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECP 57
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 324 VDDANDWNSDECCLCK--MDGSLLCCD--GCPAA-YHSKCVGVANVPEGDWFC 371
V + N+ + C C+ G ++ CD CP +H CVG+ P+G W+C
Sbjct: 17 VTEGNNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYC 69
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 354 YHSKCVGVANVPEGDWFCPECA 375
+H CVG+ P G WFCP C+
Sbjct: 42 FHFACVGLTTKPRGKWFCPRCS 63
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 327 ANDWNSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECALD 377
A D N CLC G ++ CD CP +H CV + P+G W+CP+C D
Sbjct: 10 AIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 65
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 336 CLCKMDGS----LLCCDGCPAAYHSKCVGVANVPEGD---WFCPECALDRHKPWMKPRK 387
CLC++ ++ CD C +H CVGV D + CP C + MK R+
Sbjct: 8 CLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRR 66
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 1278 TSNYIACEICGEWYHGDAFGLKVENISKLIGFRCHVC 1314
T I C++C +W+HG G++ E + + + C C
Sbjct: 17 TRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNC 53
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S DIVI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S DIVI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S DIVI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 336 CLCKMDGS----LLCCDGCPAAYHSKCVGV--ANVPEGD-WFCPECALDRHKPWMKPRKS 388
C+C++ ++ CD C +H CVGV P+ D + CP C K +K +++
Sbjct: 13 CVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRT 72
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 1282 IACEICGEWYHGDAFGLKVENISKLIGFRCHVCRK 1316
I C+ C +W+HG G++ E + + C C K
Sbjct: 26 IECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60
>pdb|1P3O|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG A+
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGAK 44
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1282 IACEICGEWYHGDAFGLKVENISKLIGFRCHVC 1314
I C +C +W+HG G++ EN + + C C
Sbjct: 28 IECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 336 CLCK----MDGSLLCCDGCPAAYHSKCVGVANVPEGD---WFCPECALDRHKPWMKPRKS 388
C+C+ ++ ++ CD C +H CVGV D + CP CA+ MK R++
Sbjct: 40 CVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRN 99
Query: 389 LRGAELLGVD 398
+ +D
Sbjct: 100 WHRHDYTEID 109
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Query: 1073 VCCQDCKGYFHKRHIRKSAGAVTTECKY---------TCYQCQDGRFKK 1112
+ C+ CKG+F +R I+KS + CKY T QCQ+ RFKK
Sbjct: 21 ITCEGCKGFF-RRTIQKSLHP-SYSCKYEGKCIIDKVTRNQCQECRFKK 67
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S D+VI HGS AE+ +
Sbjct: 43 RRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRA 85
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S D+VI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRA 65
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 336 CLCKM--DGS--LLCCDGCPAAYHSKCVGVANVPE---GDWFCPEC 374
C+CK D S + CD C YH +CVG+ ++ CP+C
Sbjct: 11 CICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 1266 KCYLCHEAEHTSTSNYIACEICGEWYHGDAFGLKVENISKLIGFRCHVCR 1315
K Y + + + YI C+ C WYHG G+ + + C C+
Sbjct: 8 KLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
>pdb|1P3I|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSARY 81
R ++ D+I +TKP +RR RRG ++
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGVKH 45
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 1262 LDQPKCYLCHEAEHTSTSNYIACEICGEWYH----------GDAFGLKVENISKLIGFRC 1311
L+ KC CHE +T + C CG W H G FG+ N L F+C
Sbjct: 41 LNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNN-GLLFCFKC 99
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 1262 LDQPKCYLCHEAEHTSTSNYIACEICGEWYH----------GDAFGLKVENISKLIGFRC 1311
L+ KC CHE +T + C CG W H G FG+ N L F+C
Sbjct: 46 LNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNN-GLLFCFKC 104
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 336 CLCKM---DGSLLCCDGCPAAYHSKCVGV--ANVPEGDWFCPECA---LDRHKPWMKPRK 387
C+C DG ++CCD C H C+G+ ++P+ + C C LD+ + + R+
Sbjct: 31 CICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDT-YLCERCQPRNLDKERAVLLQRR 89
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 1262 LDQPKCYLCHEAEHTSTSNYIACEICGEWYH----------GDAFGLKVENISKLIGFRC 1311
L+ KC CHE +T + C CG W H G FG+ N L F+C
Sbjct: 46 LNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNN-GLLFCFKC 104
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSARYKDLSSKISCEVNDAM 96
R ++ D+I +TKP +RR RRG K +S I EV + +
Sbjct: 18 RHRKILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVL 59
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 422 ILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVS 461
+LNYYC +DL V SS+T +G ++ +CK D++ +
Sbjct: 316 MLNYYC-NDLPLVSTTYGSSETTFGINLDPLCKPEDVSYT 354
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 341 DGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
D LL CD C YH C+ VA PEG W C C
Sbjct: 70 DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,624,056
Number of Sequences: 62578
Number of extensions: 1586996
Number of successful extensions: 3594
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3486
Number of HSP's gapped (non-prelim): 123
length of query: 1482
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1371
effective length of database: 8,027,179
effective search space: 11005262409
effective search space used: 11005262409
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)