Query 000462
Match_columns 1482
No_of_seqs 401 out of 1297
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 22:58:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000462.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_9-12//hhsearch_pdb/000462hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kv5_D JMJC domain-containing 1.0 1 1 130.8 -0.5 47 333-379 37-90 (488)
2 3kv4_A PHD finger protein 8; e 1.0 1 1 128.8 -1.2 47 333-379 5-58 (447)
3 3kqi_A GRC5, PHD finger protei 1.0 1 1 114.7 -0.7 58 1260-1318 5-62 (75)
4 1wep_A PHF8; structural genomi 1.0 1 1 113.4 4.7 59 1259-1318 6-64 (79)
5 3pur_A Lysine-specific demethy 1.0 1 1 112.5 1.7 38 341-378 55-95 (528)
6 2vpb_A Hpygo1, pygopus homolog 1.0 1 1 112.4 0.1 53 1263-1316 7-65 (65)
7 2xb1_A Pygopus homolog 2, B-ce 1.0 1 1 112.1 1.1 52 1266-1318 5-62 (105)
8 3u5n_A E3 ubiquitin-protein li 1.0 1 1 110.8 4.3 53 327-379 2-56 (207)
9 1we9_A PHD finger family prote 1.0 1 1 110.1 3.0 56 1262-1318 3-59 (64)
10 3lqh_A Histone-lysine N-methyl 1.0 1 1 109.6 2.9 52 1266-1318 4-64 (183)
No 1
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=130.85 Aligned_cols=47 Identities=30% Similarity=0.769 Sum_probs=36.2
Q ss_pred CCCCCCCC----CCCEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 33431135----89416217888746233237888999---8830753533678
Q 000462 333 DECCLCKM----DGSLLCCDGCPAAYHSKCVGVANVPE---GDWFCPECALDRH 379 (1482)
Q Consensus 333 D~C~VC~~----GG~LLcCD~CprafHl~CL~Pp~vPe---GdW~Cp~C~~k~~ 379 (1482)
...++|+. +|.|+.||.|..+||..|+++...+. +.|+|+.|.....
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 748767996799987687468887564210675744346888798899867768
No 2
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=128.76 Aligned_cols=47 Identities=30% Similarity=0.794 Sum_probs=36.4
Q ss_pred CCCCCCCC----CCCEEECCCCCCCCCCCCCCCCC--CC-CCCCCCCCCCCCCC
Q ss_conf 33431135----89416217888746233237888--99-98830753533678
Q 000462 333 DECCLCKM----DGSLLCCDGCPAAYHSKCVGVAN--VP-EGDWFCPECALDRH 379 (1482)
Q Consensus 333 D~C~VC~~----GG~LLcCD~CprafHl~CL~Pp~--vP-eGdW~Cp~C~~k~~ 379 (1482)
..+++|++ +|.|+.||.|..+||..|+++.. .+ .+.|+|+.|.....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 859867993799997587678886414013786701004799899989866347
No 3
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=114.67 Aligned_cols=58 Identities=24% Similarity=0.619 Sum_probs=52.5
Q ss_pred CCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCC
Q ss_conf 89899801106898789995359547889733463346796542367407737768798
Q 000462 1260 DTLDQPKCYLCHEAEHTSTSNYIACEICGEWYHGDAFGLKVENISKLIGFRCHVCRKRT 1318 (1482)
Q Consensus 1260 ~~~~~p~cclC~kpy~~~d~fyI~CD~C~~WfHGdCVgite~~a~~i~~y~C~~Cr~r~ 1318 (1482)
+....++||+|++|| +.+.+||+||.|++|||++||||+++.+..++.|+|+.|+...
T Consensus 5 ~~~~~~~yCiC~~~~-~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 5 SMATVPVYCVCRLPY-DVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp TTCCCCEETTTTEEC-CTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CCCCCEEEEECCCCC-CCCCCEEECCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 778882387778937-9997778737999877334066263444789989999896667
No 4
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=113.41 Aligned_cols=59 Identities=24% Similarity=0.591 Sum_probs=53.4
Q ss_pred CCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCC
Q ss_conf 789899801106898789995359547889733463346796542367407737768798
Q 000462 1259 TDTLDQPKCYLCHEAEHTSTSNYIACEICGEWYHGDAFGLKVENISKLIGFRCHVCRKRT 1318 (1482)
Q Consensus 1259 ~~~~~~p~cclC~kpy~~~d~fyI~CD~C~~WfHGdCVgite~~a~~i~~y~C~~Cr~r~ 1318 (1482)
......++||+|++|| +.+.+||+||.|++|||++||+|+++.+..++.|+|+.|+...
T Consensus 6 ~~~~~~~~~C~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 6 SGMALVPVYCLCRQPY-NVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCCCSTTSCSC-CSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCCCCCCCEEECCCCC-CCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCC
T ss_conf 4766786088739906-8998567767899738702157463312689849998866666
No 5
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=1.00 E-value=1 Score=112.45 Aligned_cols=38 Identities=32% Similarity=0.765 Sum_probs=30.7
Q ss_pred CCCEEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC
Q ss_conf 89416217888746233237888---999883075353367
Q 000462 341 DGSLLCCDGCPAAYHSKCVGVAN---VPEGDWFCPECALDR 378 (1482)
Q Consensus 341 GG~LLcCD~CprafHl~CL~Pp~---vPeGdW~Cp~C~~k~ 378 (1482)
+..|++||.|..+||..|+++.. .+.+.|+||.|....
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~ 95 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHT 95 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHH
T ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCC
T ss_conf 99877789998678972899994684189719995784777
No 6
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=1.00 E-value=1 Score=112.40 Aligned_cols=53 Identities=23% Similarity=0.574 Sum_probs=48.5
Q ss_pred CCCCEEECCCCCCCCCCCEEECC-CCCCCCCCCCCCCCHHHHCCCC-----EEECCCCCC
Q ss_conf 99801106898789995359547-8897334633467965423674-----077377687
Q 000462 1263 DQPKCYLCHEAEHTSTSNYIACE-ICGEWYHGDAFGLKVENISKLI-----GFRCHVCRK 1316 (1482)
Q Consensus 1263 ~~p~cclC~kpy~~~d~fyI~CD-~C~~WfHGdCVgite~~a~~i~-----~y~C~~Cr~ 1316 (1482)
....|++|++|| +++.+||+|| .|++|||++|||||++++.+|+ .|+|+.|..
T Consensus 7 ~~~~C~~C~~p~-~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEV-NDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBC-CTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCCCCCCCCCCC-CCCCCEEECCCCCCCCCCHHCCCCCHHHHHHHHCCCCCCEECCCCCC
T ss_conf 767474687965-89977584255756248332168799999875315787677927359
No 7
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=112.08 Aligned_cols=52 Identities=25% Similarity=0.670 Sum_probs=48.1
Q ss_pred CEEECCCCCCCCCCCEEECC-CCCCCCCCCCCCCCHHHHCCC-----CEEECCCCCCCC
Q ss_conf 01106898789995359547-889733463346796542367-----407737768798
Q 000462 1266 KCYLCHEAEHTSTSNYIACE-ICGEWYHGDAFGLKVENISKL-----IGFRCHVCRKRT 1318 (1482)
Q Consensus 1266 ~cclC~kpy~~~d~fyI~CD-~C~~WfHGdCVgite~~a~~i-----~~y~C~~Cr~r~ 1318 (1482)
.|.+|++|| +++.+||.|| .|++|||++||||+++.+..| ..|+||.|+.+.
T Consensus 5 ~C~iC~~p~-~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 5 PCGACRSEV-NDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp BCTTTCSBC-CTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC
T ss_conf 987999944-8999898826875602630347868899986312789879991440838
No 8
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=110.78 Aligned_cols=53 Identities=38% Similarity=0.937 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 789878334311358941621788874623323788--89998830753533678
Q 000462 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRH 379 (1482)
Q Consensus 327 ~~d~ndD~C~VC~~GG~LLcCD~CprafHl~CL~Pp--~vPeGdW~Cp~C~~k~~ 379 (1482)
+++.+++.|.+|+++|+|||||+|+++||+.|++|+ .+|+|+|+||.|...+.
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCC
T ss_conf 8788889898889999367769999843871589998888998878684268664
No 9
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=110.11 Aligned_cols=56 Identities=18% Similarity=0.626 Sum_probs=50.5
Q ss_pred CCCCCEE-ECCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCC
Q ss_conf 8998011-06898789995359547889733463346796542367407737768798
Q 000462 1262 LDQPKCY-LCHEAEHTSTSNYIACEICGEWYHGDAFGLKVENISKLIGFRCHVCRKRT 1318 (1482)
Q Consensus 1262 ~~~p~cc-lC~kpy~~~d~fyI~CD~C~~WfHGdCVgite~~a~~i~~y~C~~Cr~r~ 1318 (1482)
...+.+| +|++|| +++.+||+||.|++|||++||||+++.+..+..|+|+.|+.+.
T Consensus 3 ~~e~~~C~~C~~~~-~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESY-AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCC-CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCC
T ss_conf 88878997898805-9998878746999989924347684674689808997976958
No 10
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=1.00 E-value=1 Score=109.60 Aligned_cols=52 Identities=25% Similarity=0.584 Sum_probs=46.0
Q ss_pred CEEECCCCCCCCCCC---EEECCCCCCCCCCCCCCCCHHHHCCCC------EEECCCCCCCC
Q ss_conf 011068987899953---595478897334633467965423674------07737768798
Q 000462 1266 KCYLCHEAEHTSTSN---YIACEICGEWYHGDAFGLKVENISKLI------GFRCHVCRKRT 1318 (1482)
Q Consensus 1266 ~cclC~kpy~~~d~f---yI~CD~C~~WfHGdCVgite~~a~~i~------~y~C~~Cr~r~ 1318 (1482)
.|.+|++|| +++.+ ||+||.|++||||+||||+++.+..+. .|+||.|+.+.
T Consensus 4 ~CpiC~k~Y-~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 4 FCPLCDKCY-DDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp BCTTTCCBC-TTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CCCCCCCCC-CCCCCCCCEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 189996906-8745677857899877100610026689999986148999816991988878
Done!