Query 000464
Match_columns 1479
No_of_seqs 589 out of 2803
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 15:57:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000464.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_244-247//hhsearch_pdb/000464hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 1.0 1 1 732.2 45.0 525 711-1308 43-578 (644)
2 3mwy_W Chromo domain-containin 1.0 1 1 694.5 39.8 489 719-1305 232-737 (800)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 624.9 37.5 469 712-1303 27-498 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 465.7 26.6 445 720-1281 150-637 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 377.1 28.9 444 721-1277 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 365.2 22.8 258 975-1304 12-270 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 343.0 24.4 377 721-1276 91-471 (472)
8 4a2q_A RIG-I, retinoic acid in 1.0 1 1 336.7 30.4 494 714-1283 237-772 (797)
9 4a2w_A RIG-I, retinoic acid in 1.0 1 1 335.3 28.6 493 714-1282 237-771 (936)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 317.2 34.1 488 721-1283 5-531 (556)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=732.22 Aligned_cols=525 Identities=32% Similarity=0.558 Sum_probs=431.7
Q ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC---CCCCE
Q ss_conf 745236930021130989999999999999855430379998553999198851899999999999983024---89726
Q 000464 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL---GLRTA 787 (1479)
Q Consensus 711 ~~~v~vP~~L~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~---~~k~v 787 (1479)
...+.+|+.+...|+|||++||+|||+.+.+. ....+.||||||+||||||+|+|+++..++..... ..+++
T Consensus 43 ~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~-----~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~ 117 (644)
T 1z3i_X 43 PVHVVVDPVLSKVLRPHQREGVKFLWDCVTGR-----RIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKV 117 (644)
T ss_dssp CCCEECCHHHHTTCCHHHHHHHHHHHHHHTTS-----SSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCE
T ss_pred CCEEEECHHHHHCCCHHHHHHHHHHHHHHHCC-----CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 86175185640035199999999999842335-----4458887596107874299999999999997486656777857
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH------CCCEEEEECCCCCCCCCCCCCCCHH
Q ss_conf 9990634699999999984899999809999348535699999999961------5989998022000123463211134
Q 000464 788 LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA------KGGVFLIGYTAFRNLSFGKHVKDRN 861 (1479)
Q Consensus 788 LIVvP~SLl~nW~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~w~~------~~gVlIisYe~lr~ls~~k~~kd~~ 861 (1479)
|||||.+++.||.+||.+|+|.. +.++.+++.....+...+..|.. ..+|+|+||++++...
T Consensus 118 LiV~P~sll~qW~~E~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--------- 185 (644)
T 1z3i_X 118 IVVSPSSLVRNWYNEVGKWLGGR---VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--------- 185 (644)
T ss_dssp EEEECHHHHHHHHHHHHHHHGGG---CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---------
T ss_pred EEEECHHHHHHHHHHHHHHCCCC---EEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH---------
T ss_conf 99965899887999999975887---259998089889999999999873377778757996389987657---------
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 68998754117999999928731389510799999833246299951788865056788654311169888827898420
Q 000464 862 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 941 (1479)
Q Consensus 862 ~~~~i~~lL~~~~dlVIiDEAH~IKN~~Sk~skalk~Lkt~rRilLTGTPLqNnL~EL~sLl~FL~P~~Lgs~~eF~~~F 941 (1479)
..+....|++||+||||++||+.+++++++..+++.+||+|||||+||++.|||+|++|+.|++|++...|.++|
T Consensus 186 -----~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f 260 (644)
T 1z3i_X 186 -----EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRF 260 (644)
T ss_dssp -----TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHT
T ss_pred -----HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf -----875048865799878622478045999999855567379984673458899999999861887689999999863
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 48755678899884789999887999999974875430166674119997289997339999999999999750554532
Q 000464 942 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR 1021 (1479)
Q Consensus 942 ~~PI~~g~~~dst~~dvk~~~~rs~~L~~~L~~fv~Rr~~~dv~~~LPpK~e~vi~v~LS~~Qr~LY~~~l~~~~~~~~~ 1021 (1479)
..||..+...+++..+...+..+...|+.++.+|++||++.++...||++.+++++|+||+.|+.+|+.++.........
T Consensus 261 ~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~ 340 (644)
T 1z3i_X 261 EIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL 340 (644)
T ss_dssp HHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 26154167767788899999999999999988999871087676427983699998379989999999999989999987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHH
Q ss_conf 12378874299999999999448101000001699997555578875334421113688755011101799986311233
Q 000464 1022 VSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDW 1101 (1479)
Q Consensus 1022 ~~~~~~~~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~~~~~d~~~~~~~~~~~~~~~ 1101 (1479)
.........+..+..|+++|+||.++.............. . +.... ...
T Consensus 341 -~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~--------~--------------~~~~~----~~~---- 389 (644)
T 1z3i_X 341 -QTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGA--------L--------------DLFPQ----NYS---- 389 (644)
T ss_dssp -CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTG--------G--------------GTSCS----SCC----
T ss_pred -HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH--------H--------------HHCCC----CCC----
T ss_conf -6276214599999999999579998888874154003557--------7--------------64542----111----
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 4443210011123557059999999997311-899099990753169999999820999998763323796279841888
Q 000464 1102 WNDLLHEHTYKELDYSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT 1180 (1479)
Q Consensus 1102 ~~~ll~~~~~~~i~~SgKl~~L~eIL~~~~~-~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGst 1180 (1479)
........|+|+.+|..++..+.. .++|+||||+|+.++++|+.+|.. .|+.|.+++|++
T Consensus 390 -------~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~------------~g~~~~~l~G~~ 450 (644)
T 1z3i_X 390 -------TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN------------RRYLYVRLDGTM 450 (644)
T ss_dssp -------SSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH------------HTCCEEEECSSC
T ss_pred -------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH------------CCCCEEEEECCC
T ss_conf -------0005701174899999999998646998799998059999999999997------------799789983999
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 99999999999808899971499963464543447344688999908999324988747341029988589999982899
Q 000464 1181 ESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 1260 (1479)
Q Consensus 1181 s~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNPs~d~QAIGRv~RiGQkK~V~VYRLIt~gT 1260 (1479)
+..+|+.++++||++.+. ..+||+||++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||+|++.||
T Consensus 451 ~~~~R~~~i~~F~~~~~~-~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 451 SIKKRAKIVERFNNPSSP-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CHHHHHHHHHHHHSTTCC-CCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 999999999996399999-6799984455667846523898999799998137999988403228987269999887988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHCCCCCCCCCCCH
Q ss_conf 79999999999999999880543-2134579989986006899989980
Q 000464 1261 MEEKIYKRQVTKEGLAARVVDRQ-QVHRTISKEEMLHLFEFGDDENPDP 1308 (1479)
Q Consensus 1261 IEEkIy~rq~~K~~La~rVVd~~-~~~r~ls~~EL~~LF~~~~de~~d~ 1308 (1479)
+|++|+.+|..|+.+++.|++.. ...+.|+.+||.+||.+.++...++
T Consensus 530 iEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~~~~~t 578 (644)
T 1z3i_X 530 IEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDT 578 (644)
T ss_dssp HHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSSCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 9999999999999999998568605433789999999867898763225
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=694.46 Aligned_cols=489 Identities=30% Similarity=0.412 Sum_probs=395.3
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH
Q ss_conf 00211309899999999999998554303799985539991988518999999999999830248972699906346999
Q 000464 719 SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 798 (1479)
Q Consensus 719 ~L~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~~~k~vLIVvP~SLl~n 798 (1479)
.....|+|||++||.||+... ..+.||||||+||||||+|+|+++..++.... ..+++|||||.+++.|
T Consensus 232 ~~~~~Lr~yQ~egv~~l~~~~----------~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P~sll~q 300 (800)
T 3mwy_W 232 IKGGELRDFQLTGINWMAFLW----------SKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVPLSTMPA 300 (800)
T ss_dssp CCSSCCCTHHHHHHHHHHHHH----------TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECCTTTHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH----------HCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHHH
T ss_conf 579975899999999999985----------13899899827875329999999999998607-7998899988038999
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH----------HHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999984899999809999348535699999999----------96159899980220001234632111346899875
Q 000464 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK----------WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868 (1479)
Q Consensus 799 W~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~----------w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~ 868 (1479)
|.+||.+|+|. +++..+++............ ....++|+|+||+++... ...
T Consensus 301 W~~E~~~~~p~----~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~--------------~~~ 362 (800)
T 3mwy_W 301 WLDTFEKWAPD----LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD--------------RAE 362 (800)
T ss_dssp HHHHHHHHSTT----CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT--------------HHH
T ss_pred HHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHH--------------HHH
T ss_conf 99999997799----649998277777889888776226300134456678899069999864--------------999
Q ss_pred HHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 41179999999287313895107999998332462999517888650567886543111698888278984204875567
Q 000464 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG 948 (1479)
Q Consensus 869 lL~~~~dlVIiDEAH~IKN~~Sk~skalk~Lkt~rRilLTGTPLqNnL~EL~sLl~FL~P~~Lgs~~eF~~~F~~PI~~g 948 (1479)
+....|++||+||||++||..++.++++..+++.+||+|||||+||++.|+|++++|+.|+.|+....|.-...
T Consensus 363 l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~------ 436 (800)
T 3mwy_W 363 LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ------ 436 (800)
T ss_dssp HHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC------
T ss_pred HHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC------
T ss_conf 83377325641344441471019999999752243897227857799999999999858663674344232223------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 88998847899998879999999748754301666741199972899973399999999999997505545321237887
Q 000464 949 QHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR 1028 (1479)
Q Consensus 949 ~~~dst~~dvk~~~~rs~~L~~~L~~fv~Rr~~~dv~~~LPpK~e~vi~v~LS~~Qr~LY~~~l~~~~~~~~~~~~~~~~ 1028 (1479)
.. ........|+..+.||++||++.++...||++.+.+++|+|++.|+.+|..++......... ......
T Consensus 437 -----~~----~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-~~~~~~ 506 (800)
T 3mwy_W 437 -----DE----EQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA-GAKGGH 506 (800)
T ss_dssp -----TT----HHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-----------
T ss_pred -----CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-CCCCCH
T ss_conf -----14----68999999999975777532087664316882799997079999999999999999999861-035454
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42999999999994481010000016999975555788753344211136887550111017999863112334443210
Q 000464 1029 KSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHE 1108 (1479)
Q Consensus 1029 ~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~~~~~d~~~~~~~~~~~~~~~~~~ll~~ 1108 (1479)
.+++..++.|+++|+||.++........... ...........
T Consensus 507 ~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~--------------------------------~~~~~~~~~~~------ 548 (800)
T 3mwy_W 507 FSLLNIMNELKKASNHPYLFDNAEERVLQKF--------------------------------GDGKMTRENVL------ 548 (800)
T ss_dssp CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC------------------------------------CCSHHHH------
T ss_pred HHHHHHHHHHHHHHCCHHHHCCHHHHHHHHC--------------------------------CCCCCCHHHHH------
T ss_conf 4699999999987358654235578998861--------------------------------56655577888------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 01112355705999999999731189909999075316999999982099999876332379627984188899999999
Q 000464 1109 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL 1188 (1479)
Q Consensus 1109 ~~~~~i~~SgKl~~L~eIL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~l 1188 (1479)
...+..|+|+.+|.++|..+...|+|+|||||++.++++|+.+|.. .|+.|.+++|+++..+|+.+
T Consensus 549 --~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~------------~g~~~~~i~G~~~~~eR~~~ 614 (800)
T 3mwy_W 549 --RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI------------KGINFQRLDGTVPSAQRRIS 614 (800)
T ss_dssp --HHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH------------HTCCCEEESTTSCHHHHHHH
T ss_pred --HHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHH------------CCCCEEEEECCCCHHHHHHH
T ss_conf --8766427699999999999752798189996359999999999986------------79978999699999999999
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHH
Q ss_conf 99980889997149996346454344734468899990899932498874734102998858999998289979999999
Q 000464 1189 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKR 1268 (1479)
Q Consensus 1189 I~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNPs~d~QAIGRv~RiGQkK~V~VYRLIt~gTIEEkIy~r 1268 (1479)
+++||++.. ...+||+||+|||+||||++|++||+||++|||+.+.||+||+||+||+++|+||||++.||+|++|+++
T Consensus 615 i~~F~~~~~-~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~ 693 (800)
T 3mwy_W 615 IDHFNSPDS-NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLER 693 (800)
T ss_dssp HHTTSSTTC-SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHH
T ss_pred HHHHHCCCC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 999608999-8259997454456787760163689946878811689999998855898637999986199899999999
Q ss_pred HHHHHHHHHHHHCCCCC-------CCCCCHHHHHHCCCCCCCCC
Q ss_conf 99999999988054321-------34579989986006899989
Q 000464 1269 QVTKEGLAARVVDRQQV-------HRTISKEEMLHLFEFGDDEN 1305 (1479)
Q Consensus 1269 q~~K~~La~rVVd~~~~-------~r~ls~~EL~~LF~~~~de~ 1305 (1479)
+..|+.++..+++.... ...++.++|.+|+.++....
T Consensus 694 ~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~ 737 (800)
T 3mwy_W 694 ARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNM 737 (800)
T ss_dssp HHHHTTSCC----------------CCCCHHHHHHHHSSCSSSS
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
T ss_conf 99988899999703756653211234789999999997165765
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=624.89 Aligned_cols=469 Identities=30% Similarity=0.461 Sum_probs=398.3
Q ss_pred CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 45236930021130989999999999999855430379998553999198851899999999999983024897269990
Q 000464 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1479)
Q Consensus 712 ~~v~vP~~L~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~~~k~vLIVv 791 (1479)
+++. |..+...|+|||.+|+.||+... ..+.||||||+||+|||+++++++..+..... .+++||||
T Consensus 27 ~~~~-p~~~~~~L~~~Q~~~v~~l~~~~----------~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~ 93 (500)
T 1z63_A 27 QLLE-PYNIKANLRPYQIKGFSWMRFMN----------KLGFGICLADDMGLGKTLQTIAVFSDAKKENE--LTPSLVIC 93 (500)
T ss_dssp CCCC-CCSCSSCCCHHHHHHHHHHHHHH----------HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC--CSSEEEEE
T ss_pred CCCC-CHHHHCCCHHHHHHHHHHHHHHH----------HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCCEEEEC
T ss_conf 6679-83320033699999999999974----------17998899808997389999999998875589--99789990
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 63469999999998489999980999934853569999999996159899980220001234632111346899875411
Q 000464 792 PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871 (1479)
Q Consensus 792 P~SLl~nW~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~lL~ 871 (1479)
|.+++.||.+||.+|+|. +++..+++.... .....++|+|+||+++.... .+..
T Consensus 94 P~~l~~qw~~e~~~~~~~----~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~---------------~l~~ 147 (500)
T 1z63_A 94 PLSVLKNWEEELSKFAPH----LRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDT---------------RLKE 147 (500)
T ss_dssp CSTTHHHHHHHHHHHCTT----SCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCH---------------HHHT
T ss_pred CHHHHHHHHHHHHHHCCC----CEEEEEECCCHH-------CCCCCCCEEEEEHHHHHCCC---------------HHCC
T ss_conf 389999999999997799----559997267021-------00357768996379972630---------------2117
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 79999999287313895107999998332462999517888650567886543111698888278984204875567889
Q 000464 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 951 (1479)
Q Consensus 872 ~~~dlVIiDEAH~IKN~~Sk~skalk~Lkt~rRilLTGTPLqNnL~EL~sLl~FL~P~~Lgs~~eF~~~F~~PI~~g~~~ 951 (1479)
..|++||+||||+++|..+++++++..+.+.+||+|||||++|++.|+|++++|+.|+++++...|...|..|+..+..
T Consensus 148 ~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~- 226 (500)
T 1z63_A 148 VEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN- 226 (500)
T ss_dssp CCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCH-
T ss_conf 8728799808410178768999999960047189974677779999999999985877579989999985251114668-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 98847899998879999999748754301666--7411999728999733999999999999975055453212378874
Q 000464 952 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV--VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 1029 (1479)
Q Consensus 952 dst~~dvk~~~~rs~~L~~~L~~fv~Rr~~~d--v~~~LPpK~e~vi~v~LS~~Qr~LY~~~l~~~~~~~~~~~~~~~~~ 1029 (1479)
.....|...+.+++.|+.+.+ +...||++.+.+++++|++.|+.+|+.+..................
T Consensus 227 -----------~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 295 (500)
T 1z63_A 227 -----------MAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKG 295 (500)
T ss_dssp -----------HHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHH
T ss_pred -----------HHHHHHHHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf -----------899999999766745502554241122999758999818999999999999999999998642321067
Q ss_pred HHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 29999999999944810100000169999755557887533442111368875501110179998631123344432100
Q 000464 1030 SFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEH 1109 (1479)
Q Consensus 1030 sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~~~~~d~~~~~~~~~~~~~~~~~~ll~~~ 1109 (1479)
.++..+..++++|+||.++....
T Consensus 296 ~~~~~l~~lr~~~~~p~l~~~~~--------------------------------------------------------- 318 (500)
T 1z63_A 296 MILSTLLKLKQIVDHPALLKGGE--------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHTTCTHHHHCSC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCHHHHCCCC---------------------------------------------------------
T ss_conf 99999999998817998843852---------------------------------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 11123557059999999997311899099990753169999999820999998763323796279841888999999999
Q 000464 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 1189 (1479)
Q Consensus 1110 ~~~~i~~SgKl~~L~eIL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI 1189 (1479)
.....|+|+..+.+++......|+|+|||+++..+++.|..+|.. ..|+.+.+++|+++..+|++++
T Consensus 319 --~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~-----------~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 319 --QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp --CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHH-----------HHTCCCCEEETTSCHHHHHHHH
T ss_pred --CHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHH-----------HHCCCEEEEECCCCHHHHHHHH
T ss_conf --011115529999999999872688689997218899999999988-----------5388769997999999999999
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 99808899971499963464543447344688999908999324988747341029988589999982899799999999
Q 000464 1190 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269 (1479)
Q Consensus 1190 ~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNPs~d~QAIGRv~RiGQkK~V~VYRLIt~gTIEEkIy~rq 1269 (1479)
++|++++ .++++|+||+++|+||||++|++||+||++|||..+.||+||++|+||+++|+||+|++.||+|++|++++
T Consensus 386 ~~F~~~~--~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 386 SKFQNNP--SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp HHHHHCT--TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred HHHCCCC--CCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHH
T ss_conf 9960899--98779995333557774455888999589989545899999888738987069999774898999999999
Q ss_pred HHHHHHHHHHHCCC-CCCCCCCHHHHHHCCCCCCC
Q ss_conf 99999999880543-21345799899860068999
Q 000464 1270 VTKEGLAARVVDRQ-QVHRTISKEEMLHLFEFGDD 1303 (1479)
Q Consensus 1270 ~~K~~La~rVVd~~-~~~r~ls~~EL~~LF~~~~d 1303 (1479)
..|..++..+++.. .....++.+||.+||.+.+.
T Consensus 464 ~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 464 AFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 498 (500)
T ss_dssp TTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCCC
T ss_conf 99999999986068502115999999999646889
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=465.71 Aligned_cols=445 Identities=19% Similarity=0.187 Sum_probs=320.4
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHH
Q ss_conf 02113098999999999999985543037999855399919885189999999999998302489726999063469999
Q 000464 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1479)
Q Consensus 720 L~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~~~k~vLIVvP~SLl~nW 799 (1479)
....|+|||..++.|++. ..+.|+||||+||+|||+++++++..++..+. .+++|||||.+|+.||
T Consensus 150 ~~~~LrpyQ~eav~~~l~------------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~sLl~Qw 215 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR------------RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPETLQHQW 215 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH------------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCTTTHHHH
T ss_pred CCCCCCHHHHHHHHHHHH------------HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHH
T ss_conf 899970999999999997------------05898898789997599999999999998189--9829999578889999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999848999998099993485356999999999615989998022000123463211134689987541179999999
Q 000464 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1479)
Q Consensus 800 ~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~lL~~~~dlVIi 879 (1479)
..||.+|++ +.+.++++.................+|+|+||+++..... ....+....|++||+
T Consensus 216 ~~E~~~~f~-----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~-----------~~~~l~~~~~dlVIv 279 (968)
T 3dmq_A 216 LVEMLRRFN-----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQ-----------RLEHLCEAEWDLLVV 279 (968)
T ss_dssp HHHHHHHSC-----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTT-----------TTHHHHTSCCCEEEE
T ss_pred HHHHHHHHC-----CCEEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCHH-----------HHHHHHHCCCCEEEE
T ss_conf 999999869-----9879980620555432003644568989976899864878-----------888764158778974
Q ss_pred CCCCCCCCCCHHH---HHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC---------
Q ss_conf 2873138951079---9999833--2462999517888650567886543111698888278984204875---------
Q 000464 880 DEAHMIKNTRADT---TQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI--------- 945 (1479)
Q Consensus 880 DEAH~IKN~~Sk~---skalk~L--kt~rRilLTGTPLqNnL~EL~sLl~FL~P~~Lgs~~eF~~~F~~PI--------- 945 (1479)
||||+++|..+.. ++++..+ +++++|+|||||++|++.|+|++++|+.|+.+++...|...+....
T Consensus 280 DEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l 359 (968)
T 3dmq_A 280 DEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAML 359 (968)
T ss_dssp CCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44676258887542999999998625785899976876698799999998259301189899999998578899999987
Q ss_pred CCCCC---------C---------------CCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 56788---------9---------------9884789999887999999974-----87543016667411999728999
Q 000464 946 ENGQH---------T---------------NSTSEDVKIMNQRSHILYEQLK-----GFVQRMDMNVVKKDLPPKTVFVI 996 (1479)
Q Consensus 946 ~~g~~---------~---------------dst~~dvk~~~~rs~~L~~~L~-----~fv~Rr~~~dv~~~LPpK~e~vi 996 (1479)
..+.. . ...... ....+...+..++. ..+.|.....+ ..+|++..+.+
T Consensus 360 ~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~ 436 (968)
T 3dmq_A 360 LAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSED--AQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTI 436 (968)
T ss_dssp TTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSC--STTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEE
T ss_pred HCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEE
T ss_conf 426789988999999884203367887503622233--379999999999986173326563226554-55671115752
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 73399999999999997505545321237887429999999999944810100000169999755557887533442111
Q 000464 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVV 1076 (1479)
Q Consensus 997 ~v~LS~~Qr~LY~~~l~~~~~~~~~~~~~~~~~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~ 1076 (1479)
.+.+++..+.+|........... .. .. ...+.+|..+...
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~---~~----~~--------~~~~l~pe~~~~~------------------------- 476 (968)
T 3dmq_A 437 KLPLPTQYQTAIKVSGIMGARKS---AE----DR--------ARDMLYPERIYQE------------------------- 476 (968)
T ss_dssp EECCCHHHHHHHHHHHHTTCCSS---GG----GG--------THHHHCSGGGTTT-------------------------
T ss_pred ECCCCHHHHHHHHHHHHHHHHHH---HH----HH--------HHHHCCHHHHHHH-------------------------
T ss_conf 36899999999998754302126---67----77--------7641085989987-------------------------
Q ss_pred CCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf 36887550111017999863112334443210011123557059999999997311899099990753169999999820
Q 000464 1077 IGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSK 1156 (1479)
Q Consensus 1077 ~~~k~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~i~~SgKl~~L~eIL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~ 1156 (1479)
+..........++|+..|.+++.. ..+.|+||||++..+++.|...|..
T Consensus 477 -----------------------------l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 477 -----------------------------FEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp -----------------------------TTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred -----------------------------HHHHHHCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf -----------------------------643331356856799999999983--7999789996959999999999998
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 99999876332379627984188899999999999808899971499963464543447344688999908999324988
Q 000464 1157 LPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236 (1479)
Q Consensus 1157 l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNPs~d~Q 1236 (1479)
. .|+.+..++|+++..+|+.++++|+++.+ .+. +|++|++++.|||++.|++||+||++|||..+.|
T Consensus 526 ~-----------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~-vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q 592 (968)
T 3dmq_A 526 R-----------EGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQ 592 (968)
T ss_dssp T-----------TCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCE-EEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHH
T ss_pred H-----------CCCCEEEEECCCCHHHHHHHHHHHHCCCC-CCC-EEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 7-----------49838998499999999999999747997-630-8985334316888556767999569998789998
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 747341029988589999982899799999999999999998805
Q 000464 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 1281 (1479)
Q Consensus 1237 AIGRv~RiGQkK~V~VYRLIt~gTIEEkIy~rq~~K~~La~rVVd 1281 (1479)
++||++|+||++.|+||+++..+|+|++|+..+..|..+....+.
T Consensus 593 ~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~ 637 (968)
T 3dmq_A 593 RIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCP 637 (968)
T ss_dssp HHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCS
T ss_pred HHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCC
T ss_conf 701143079985089998057771999999999867876353799
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=377.14 Aligned_cols=444 Identities=16% Similarity=0.121 Sum_probs=282.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECH-HHHHHH
Q ss_conf 2113098999999999999985543037999855399919885189999999999998302489726999063-469999
Q 000464 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 799 (1479)
Q Consensus 721 ~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~~~k~vLIVvP~-SLl~nW 799 (1479)
...|+|||.+++.|++. + ++||+++||+|||+++++++...+.. ..+++|||||. +|+.||
T Consensus 7 ~~~l~~~Q~~~i~~~~~--------------~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~ 68 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE--------------T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQH 68 (494)
T ss_dssp HHCCCHHHHHHHHHGGG--------------S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH--------------C-CEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHH
T ss_conf 87863999999999961--------------9-98999189987899999999999864---798599997888999999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999848999998099993485356999999999615989998022000123463211134689987541179999999
Q 000464 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1479)
Q Consensus 800 ~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~lL~~~~dlVIi 879 (1479)
.++|.+|+.. ....+..+++....... .......+|+|+||+.+...... ..+....|++||+
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~g~~~~~~~---~~~~~~~~ivv~T~~~l~~~~~~------------~~~~~~~~~~vIi 131 (494)
T 1wp9_A 69 AESFRRLFNL--PPEKIVALTGEKSPEER---SKAWARAKVIVATPQTIENDLLA------------GRISLEDVSLIVF 131 (494)
T ss_dssp HHHHHHHBCS--CGGGEEEECSCSCHHHH---HHHHHHCSEEEECHHHHHHHHHT------------TSCCTTSCSEEEE
T ss_pred HHHHHHHHCC--CHHHEEEEECCCCHHHH---HHHCCCCCEEEECHHHHHHHHHC------------CCCCHHHCEEEEE
T ss_conf 9999987475--61116876077533556---65335798999639999999860------------8715654108999
Q ss_pred CCCCCCCCCCHHHH--HHH-HHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCCCCCC-CCC
Q ss_conf 28731389510799--999-833246299951788865056788654311169---88882789842048755678-899
Q 000464 880 DEAHMIKNTRADTT--QAL-KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG---FLGSSHEFRNRFQNPIENGQ-HTN 952 (1479)
Q Consensus 880 DEAH~IKN~~Sk~s--kal-k~Lkt~rRilLTGTPLqNnL~EL~sLl~FL~P~---~Lgs~~eF~~~F~~PI~~g~-~~d 952 (1479)
||||++++..+... ..+ ...+..++|+|||||. |+..+++.++.++.+. .......+...|..+..... ...
T Consensus 132 DEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (494)
T 1wp9_A 132 DEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD 210 (494)
T ss_dssp ETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC
T ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECC
T ss_conf 787566888819999999973288776999956998-8857899999850700050267875878875278742689568
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH-----HHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 884789999887999999974875430166674119997289997339999-----999999999750554532123788
Q 000464 953 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPL-----QRRLYKRFLDLHGFTNDRVSNEKI 1027 (1479)
Q Consensus 953 st~~dvk~~~~rs~~L~~~L~~fv~Rr~~~dv~~~LPpK~e~vi~v~LS~~-----Qr~LY~~~l~~~~~~~~~~~~~~~ 1027 (1479)
.. . ....+...+.+++.++........+..... ..++.. ...++. .+..... ........
T Consensus 211 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~ 275 (494)
T 1wp9_A 211 LP-E-------IYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINE-EMAKGNH--DLRGLLLY 275 (494)
T ss_dssp CC-H-------HHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHH-HHTTTCC--STTTHHHH
T ss_pred CC-H-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHHHH-HHHCCCC--CHHHHHHH
T ss_conf 85-8-------899999989899999999999735565457----77335578999999998-7533563--11347999
Q ss_pred ------------------HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf ------------------74299999999999448101000001699997555578875334421113688755011101
Q 000464 1028 ------------------RKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQ 1089 (1479)
Q Consensus 1028 ------------------~~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~~~~~d~~~ 1089 (1479)
...+...+..+...+.++..... ...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------~~~-- 319 (494)
T 1wp9_A 276 HAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS----------------------------------KEI-- 319 (494)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH----------------------------------HHH--
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHH----------------------------------HHH--
T ss_conf 98888899999999852579999999999875223211455----------------------------------666--
Q ss_pred CCCCCCCCHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7999863112334443210--01112355705999999999731--1899099990753169999999820999998763
Q 000464 1090 GKNDDGFFQKDWWNDLLHE--HTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGK 1165 (1479)
Q Consensus 1090 ~~~~~~~~~~~~~~~ll~~--~~~~~i~~SgKl~~L~eIL~~~~--~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~ 1165 (1479)
+........... ........++|+..|.++|.... ..+.|+|||+++..+++.|..+|..
T Consensus 320 -------~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~--------- 383 (494)
T 1wp9_A 320 -------FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK--------- 383 (494)
T ss_dssp -------HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH---------
T ss_pred -------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH---------
T ss_conf -------6507889899999988745899869999999999984368997599997668999999999997---------
Q ss_pred CCCCCCCEEEECC--------CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 3237962798418--------88999999999998088999714999634645434473446889999089993249887
Q 000464 1166 LWKKGKDWYRLDG--------RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1237 (1479)
Q Consensus 1166 ~w~~Gi~y~rLDG--------sts~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNPs~d~QA 1237 (1479)
.|+.+.+++| +++..+|+.++++|+++ .++ +|++|+++++||||+++++||+||++|||..+.|+
T Consensus 384 ---~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---~~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr 456 (494)
T 1wp9_A 384 ---DGIKAKRFVGQASKENDRGLSQREQKLILDEFARG---EFN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQR 456 (494)
T ss_dssp ---TTCCEEEECCSSCC-------CCHHHHHHHHHHHT---SCS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHH
T ss_pred ---CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC---CCE-EEEECCCCCCCCCCHHCCEEEEECCCCCHHHHHHH
T ss_conf ---59980799656654444458999999999998669---946-99988841258871437989992898878999998
Q ss_pred HHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 4734102998858999998289979999999999999999
Q 000464 1238 IYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 1277 (1479)
Q Consensus 1238 IGRv~RiGQkK~V~VYRLIt~gTIEEkIy~rq~~K~~La~ 1277 (1479)
+||++|.|| +.+|+|++.+|+|++++.++..|..++.
T Consensus 457 ~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 457 RGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 752257788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=365.19 Aligned_cols=258 Identities=29% Similarity=0.384 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
Q ss_conf 75430166674119997289997339999999999999750554532123788742999999999994481010000016
Q 000464 975 FVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 1054 (1479)
Q Consensus 975 fv~Rr~~~dv~~~LPpK~e~vi~v~LS~~Qr~LY~~~l~~~~~~~~~~~~~~~~~sll~~l~~LrkIcnHP~Ll~~~~~~ 1054 (1479)
--+||+++++..+||||.+++++|+||+.|+++|+.++..................++..++.||++|+||.++....
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~-- 89 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-- 89 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC--
T ss_pred CCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC--
T ss_conf 564164877875199977999981899999999999999999999740352128899999999999848998846873--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99997555578875334421113688755011101799986311233444321001112355705999999999731189
Q 000464 1055 GYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMG 1134 (1479)
Q Consensus 1055 ~~~~~ed~dd~~sd~~~d~~~~~~~k~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~i~~SgKl~~L~eIL~~~~~~G 1134 (1479)
.....|+|+..|.++|..+...|
T Consensus 90 ---------------------------------------------------------~~~~~s~K~~~L~~ll~~~~~~~ 112 (271)
T 1z5z_A 90 ---------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEG 112 (271)
T ss_dssp ---------------------------------------------------------CCSTTCHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------CCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ---------------------------------------------------------22346899999999999998679
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
Q ss_conf 90999907531699999998209999987633237962798418889999999999980889997149996346454344
Q 000464 1135 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1214 (1479)
Q Consensus 1135 ~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GL 1214 (1479)
+|+||||+|+.++++|+.+|.. ..|+.+.+++|+++..+|+.++++|++++ .++|||+||++||.||
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~-----------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~v~L~st~~~g~Gl 179 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDIISKFQNNP--SVKFIVLSVKAGGFGI 179 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHH-----------HHCSCCCEECTTSCHHHHHHHHHHHHHCT--TCCEEEEECCTTCCCC
T ss_pred CEEEEEECCHHHHHHHHHHHHH-----------HCCCCEEEEECCCCHHHHHHHHHHHCCCC--CCCEEEEEHHHHCCCC
T ss_conf 9699995519999999999987-----------33984799979999999999999832899--9978997223515886
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHH
Q ss_conf 7344688999908999324988747341029988589999982899799999999999999998805432-134579989
Q 000464 1215 NLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTISKEE 1293 (1479)
Q Consensus 1215 NLt~AnrVIi~D~~WNPs~d~QAIGRv~RiGQkK~V~VYRLIt~gTIEEkIy~rq~~K~~La~rVVd~~~-~~r~ls~~E 1293 (1479)
||++|++||+||+||||..+.||+||+||+||+++|+||+|++.||+|++|++++..|..+++.+++... ....++.+|
T Consensus 180 nl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~ 259 (271)
T 1z5z_A 180 NLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEE 259 (271)
T ss_dssp CCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHH
T ss_conf 76448999997999985189999985232389985699998549889999999999999999999716705432389999
Q ss_pred HHHCCCCCCCC
Q ss_conf 98600689998
Q 000464 1294 MLHLFEFGDDE 1304 (1479)
Q Consensus 1294 L~~LF~~~~de 1304 (1479)
|.+||.+++++
T Consensus 260 l~~l~~~~~~~ 270 (271)
T 1z5z_A 260 LRKVIELSVGG 270 (271)
T ss_dssp HHHHHSCCCTT
T ss_pred HHHHHCCCCCC
T ss_conf 99996558899
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=342.96 Aligned_cols=377 Identities=20% Similarity=0.189 Sum_probs=268.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECH-HHHHHH
Q ss_conf 2113098999999999999985543037999855399919885189999999999998302489726999063-469999
Q 000464 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 799 (1479)
Q Consensus 721 ~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~~~k~vLIVvP~-SLl~nW 799 (1479)
...|+|||.+++.+++ .+.++||+++||+|||++++.++... .+++|||||. +|+.||
T Consensus 91 ~~~l~~~Q~~ai~~i~--------------~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~ 149 (472)
T 2fwr_A 91 EISLRDYQEKALERWL--------------VDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQW 149 (472)
T ss_dssp CCCBCHHHHHHHHHHT--------------TTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--------------HCCCEEEEECCCCCHHHHHHHHHHHC-------CCCEEEEECCHHHHHHH
T ss_conf 9986889999999999--------------65987999699998899999999980-------99999998799999999
Q ss_pred HHHHHHHCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999984899999809-999348535699999999961598999802200012346321113468998754117999999
Q 000464 800 KQEFMKWRPSELKPLR-VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1479)
Q Consensus 800 ~~Ei~kw~P~~~~~l~-V~~l~~~~~~~r~~~l~~w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~lL~~~~dlVI 878 (1479)
.++|.+| + +. +..+++... ...+|+|+||+++.... ..+...|++||
T Consensus 150 ~~~~~~~-~-----~~~v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~---------------~~~~~~~~liI 197 (472)
T 2fwr_A 150 KERLGIF-G-----EEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNA---------------EKLGNRFMLLI 197 (472)
T ss_dssp HHHGGGG-C-----GGGEEEBSSSCB-----------CCCSEEEEEHHHHHHTH---------------HHHTTTCSEEE
T ss_pred HHHHHHC-C-----CCCEEEECCCCC-----------CCCCEEEEECHHHHHHH---------------HHHCCCCCEEE
T ss_conf 9999967-9-----963699878767-----------76778999768999779---------------97368777899
Q ss_pred ECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 92873138951079999983324629995178886505678865431116988882789842048755678899884789
Q 000464 879 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 958 (1479)
Q Consensus 879 iDEAH~IKN~~Sk~skalk~Lkt~rRilLTGTPLqNnL~EL~sLl~FL~P~~Lgs~~eF~~~F~~PI~~g~~~dst~~dv 958 (1479)
+||+|++.+.... ..+..+.+.++++|||||.+++-.+.
T Consensus 198 vDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~--------------------------------------- 236 (472)
T 2fwr_A 198 FDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE--------------------------------------- 236 (472)
T ss_dssp EETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG---------------------------------------
T ss_pred EECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHHH---------------------------------------
T ss_conf 9897578976899--99973577818999327668897789---------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998879999999748754301666741-199972899973399999999999997505545321237887429999999
Q 000464 959 KIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 1037 (1479)
Q Consensus 959 k~~~~rs~~L~~~L~~fv~Rr~~~dv~~-~LPpK~e~vi~v~LS~~Qr~LY~~~l~~~~~~~~~~~~~~~~~sll~~l~~ 1037 (1479)
.+...+.+.+.+.....+.. .+++.....+.+.+++.++..|..+..........
T Consensus 237 --------~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------- 292 (472)
T 2fwr_A 237 --------ILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA---------------- 292 (472)
T ss_dssp --------SHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS----------------
T ss_pred --------HHHHHHCCEEEECCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH----------------
T ss_conf --------99997298576547898706767881899998589989999999999999999986----------------
Q ss_pred HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99994481010000016999975555788753344211136887550111017999863112334443210011123557
Q 000464 1038 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 1117 (1479)
Q Consensus 1038 LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~i~~S 1117 (1479)
..+... ....+ ..+................ ...........+
T Consensus 293 -------~~~~~~-~~~~~----------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 334 (472)
T 2fwr_A 293 -------RGITLR-RAEDF----------------------------NKIVMASGYDERAYEALRA--WEEARRIAFNSK 334 (472)
T ss_dssp -------CCCTTT-CCSSS----------------------------TTTTTTTCCSSSSSTTTHH--HHHHHHHHHSCS
T ss_pred -------CCCCCC-CHHHH----------------------------HHHHHHHCCCHHHHHHHHH--HHHHHHHHHCCH
T ss_conf -------475422-44668----------------------------9999872369889999999--999999763373
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 05999999999731189909999075316999999982099999876332379627984188899999999999808899
Q 000464 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1479)
Q Consensus 1118 gKl~~L~eIL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~FN~~~n 1197 (1479)
.|+..|.+++.. ..++|+|||+++..+++.|...|. +..++|.++..+|+.++++|++
T Consensus 335 ~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----------------~~~~~g~~~~~~R~~~~~~F~~--- 392 (472)
T 2fwr_A 335 NKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----------------IPAITHRTSREEREEILEGFRT--- 392 (472)
T ss_dssp HHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----------------CCBCCSSSCSHHHHTHHHHHHH---
T ss_pred HHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----------------CCEEECCCCHHHHHHHHHHHHC---
T ss_conf 899999999985--789838999797999999999748-----------------6556289999999999999867---
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 97149996346454344734468899990899932498874734102998-85899999828997999999999999999
Q 000464 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAYRLMAHGTMEEKIYKRQVTKEGLA 1276 (1479)
Q Consensus 1198 ~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNPs~d~QAIGRv~RiGQk-K~V~VYRLIt~gTIEEkIy~rq~~K~~La 1276 (1479)
+.++ +|++|+++++|+|++.++.||++|++|||..+.|++||++|.||. +.|+||+|++.+|+|+++..++..|..++
T Consensus 393 g~~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 393 GRFR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SSCS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CCCC-EEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9988-899857051484620286899989999888999987631577799853999999819985379999998765058
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=336.74 Aligned_cols=494 Identities=14% Similarity=0.147 Sum_probs=281.0
Q ss_pred CCCCCHH--HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEE
Q ss_conf 2369300--21130989999999999999855430379998553999198851899999999999983024-89726999
Q 000464 714 VRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIV 790 (1479)
Q Consensus 714 v~vP~~L--~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~-~~k~vLIV 790 (1479)
+..|..+ ...|+|||..++.++. .+.++|++++||+|||++++..+...+..... ..+++|||
T Consensus 237 ~~~~~~~~g~~~l~~~Q~~~i~~~l--------------~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl 302 (797)
T 4a2q_A 237 IGKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302 (797)
T ss_dssp -----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEE
T ss_pred HCCCHHHCCCCCCCHHHHHHHHHHH--------------HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 2485442388999999999999998--------------09998999699972999999999999984665679969999
Q ss_pred EC-HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 06-34699999999984899999809999348535699999999961598999802200012346321113468998754
Q 000464 791 TP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869 (1479)
Q Consensus 791 vP-~SLl~nW~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~l 869 (1479)
|| ..|+.||..+|.+|++.. .+++..+++...... ....+....+|+|+||+.+..........
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~----------- 367 (797)
T 4a2q_A 303 ATKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTLT----------- 367 (797)
T ss_dssp CSSHHHHHHHHHHHHHHHGGG--TCCEEEECCC-------CHHHHHHTCSEEEECHHHHHHHHHSSSCC-----------
T ss_pred ECCHHHHHHHHHHHHHHCCCC--CCEEEEEECCCCHHH--HHHHHHCCCCEEEECHHHHHHHHHHCCCC-----------
T ss_conf 698999999999999861437--946999969962324--69974079999997669999999826546-----------
Q ss_pred HCCCCCEEEECCCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCCCCCCHHH----------HHHHHHHHCC-C
Q ss_conf 117999999928731389510799999833---------2462999517888650567----------8865431116-9
Q 000464 870 LQDGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLME----------YYCMVDFVRE-G 929 (1479)
Q Consensus 870 L~~~~dlVIiDEAH~IKN~~Sk~skalk~L---------kt~rRilLTGTPLqNnL~E----------L~sLl~FL~P-~ 929 (1479)
....|++||+||||++.+... ....+..+ ...++++|||||.+++..+ ++..+++-.. .
T Consensus 368 ~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~ 446 (797)
T 4a2q_A 368 SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST 446 (797)
T ss_dssp CGGGCSEEEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCCCCEEEEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 513377899988635588764-9999999999763147887859997277554552248999999999998549848854
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
Q ss_conf 88882789842048755678899--8847899998879999999748754301666741199972899973399999999
Q 000464 930 FLGSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRL 1007 (1479)
Q Consensus 930 ~Lgs~~eF~~~F~~PI~~g~~~d--st~~dvk~~~~rs~~L~~~L~~fv~Rr~~~dv~~~LPpK~e~vi~v~LS~~Qr~L 1007 (1479)
.......+...+..|........ ....-..........++..+..+....... .+| ...+.. ..
T Consensus 447 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~----~~~-------~~~~g~---~~ 512 (797)
T 4a2q_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLS----QNS-------KKDFGT---QN 512 (797)
T ss_dssp CCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC-----------------------CCSS---HH
T ss_pred CCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC-------CCCCCC---HH
T ss_conf 5431788997358885488845777786789999999999999999987567765----300-------001140---56
Q ss_pred HHHHHHHHC----CC--CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999997505----54--532123788742999999999994481010000016999975555788753344211136887
Q 000464 1008 YKRFLDLHG----FT--NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKP 1081 (1479)
Q Consensus 1008 Y~~~l~~~~----~~--~~~~~~~~~~~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~ 1081 (1479)
|..++.... .. ............+......+++. ++...+.... .. .+. ...
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~--~~---~~~--------~~~-------- 570 (797)
T 4a2q_A 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RI---IDA--------LSY-------- 570 (797)
T ss_dssp HHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CH---HHH--------HHH--------
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCC--CH---HHH--------HHH--------
T ss_conf 7789999999877740343202567999999999999999-9887654132--58---889--------999--------
Q ss_pred CCCHHHHCCC--CCCCCCHHHHHHHH------HHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHH
Q ss_conf 5501110179--99863112334443------21001112355705999999999731--18990999907531699999
Q 000464 1082 RNMNDFLQGK--NDDGFFQKDWWNDL------LHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIE 1151 (1479)
Q Consensus 1082 ~~~~d~~~~~--~~~~~~~~~~~~~l------l~~~~~~~i~~SgKl~~L~eIL~~~~--~~G~KVLIFSQ~~~tLdlLe 1151 (1479)
...+.... .............+ +..........++|+..|.++|.... ..+.|+|||++++.+++.|.
T Consensus 571 --l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~ 648 (797)
T 4a2q_A 571 --LTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALK 648 (797)
T ss_dssp --HHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHH
T ss_pred --HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
T ss_conf --999999875047668999999999999999987630788899599999999999850589970899979589999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99820999998763323796279841888999999999998088999714999634645434473446889999089993
Q 000464 1152 FYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231 (1479)
Q Consensus 1152 ~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNP 1231 (1479)
.+|...............|..+..++|+++..+|..++++|++ ++.++ +|++|++++.|||++.+++||+||++|||
T Consensus 649 ~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~--~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~ 725 (797)
T 4a2q_A 649 KCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNV 725 (797)
T ss_dssp HHHHTCSTTCSCCCEEC------------------------------CCS-EEEEECC-------CCCSEEEEESCCSCH
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEECCCHHCCCCCHHCCEEEEECCCCCH
T ss_conf 9997475646655218984477545789899999999998513--69704-99974805447975108989994899988
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2498874734102998858999998289979999999999999999880543
Q 000464 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1283 (1479)
Q Consensus 1232 s~d~QAIGRv~RiGQkK~V~VYRLIt~gTIEEkIy~rq~~K~~La~rVVd~~ 1283 (1479)
..+.|++|| |+.+++.+|+|++.++++++ +..+..|..++..++..-
T Consensus 726 ~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l 772 (797)
T 4a2q_A 726 TKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI 772 (797)
T ss_dssp HHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 999985388----87878659999728768899-998889999999999987
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=335.28 Aligned_cols=493 Identities=14% Similarity=0.140 Sum_probs=274.8
Q ss_pred CCCCCHH--HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEE
Q ss_conf 2369300--21130989999999999999855430379998553999198851899999999999983024-89726999
Q 000464 714 VRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIV 790 (1479)
Q Consensus 714 v~vP~~L--~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~-~~k~vLIV 790 (1479)
+..|..+ ...|+|||..++.++. .+.++|++++||+|||++++..+...+..... ..+++|||
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~il--------------~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl 302 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302 (936)
T ss_dssp -----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEE
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHH--------------CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 2376533478987799999999998--------------09989999699845999999999999973655689859999
Q ss_pred EC-HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 06-34699999999984899999809999348535699999999961598999802200012346321113468998754
Q 000464 791 TP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869 (1479)
Q Consensus 791 vP-~SLl~nW~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~l 869 (1479)
|| ..|+.||..+|.+|++.. .+++..+++...... ....+....+|+|+||+++..........
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~G~~~~~~--~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~----------- 367 (936)
T 4a2w_A 303 ATKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTLT----------- 367 (936)
T ss_dssp CSSHHHHHHHHHHHHHHHHTT--TCCEEEECCC-------CCHHHHHHCSEEEECHHHHHHHHHSSSCC-----------
T ss_pred ECCHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCHHH--HHHHHCCCCCEEEECHHHHHHHHHCCCCC-----------
T ss_conf 698999999999999971216--955999979963125--78974169999994499999998717645-----------
Q ss_pred HCCCCCEEEECCCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCCCCCCHHHHH----------HHHHHHCC-C
Q ss_conf 117999999928731389510799999833---------246299951788865056788----------65431116-9
Q 000464 870 LQDGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYY----------CMVDFVRE-G 929 (1479)
Q Consensus 870 L~~~~dlVIiDEAH~IKN~~Sk~skalk~L---------kt~rRilLTGTPLqNnL~EL~----------sLl~FL~P-~ 929 (1479)
....|++||+||||++.+..+ ....+..+ ...++++|||||.+++..+++ .+++.-.. .
T Consensus 368 ~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~ 446 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST 446 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCCCCEEEEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 336787999987313599866-9999999999863137886739986388554540208999999999998549715534
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
Q ss_conf 88882789842048755678899--8847899998879999999748754301666741199972899973399999999
Q 000464 930 FLGSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRL 1007 (1479)
Q Consensus 930 ~Lgs~~eF~~~F~~PI~~g~~~d--st~~dvk~~~~rs~~L~~~L~~fv~Rr~~~dv~~~LPpK~e~vi~v~LS~~Qr~L 1007 (1479)
.......+...+..|........ ...............++..+..++. ...++... ...+.. ..
T Consensus 447 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~-------~~~l~~~~----~~~~g~---~~ 512 (936)
T 4a2w_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY-------VDTLSQNS----KKDFGT---QN 512 (936)
T ss_dssp CCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC-----------------------CCSS---HH
T ss_pred CCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCC----CCCCCH---HH
T ss_conf 65448999875367762377336556757999999999999999998876-------65553202----233225---77
Q ss_pred HHHHHHHH-----CCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999750-----554-532123788742999999999994481010000016999975555788753344211136887
Q 000464 1008 YKRFLDLH-----GFT-NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKP 1081 (1479)
Q Consensus 1008 Y~~~l~~~-----~~~-~~~~~~~~~~~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~ 1081 (1479)
|..++... ... ............+......+++. ++...+.... +.. +. ..
T Consensus 513 y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~--~~~---~~--------~~--------- 569 (936)
T 4a2w_A 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RII---DA--------LS--------- 569 (936)
T ss_dssp HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CHH---HH--------HH---------
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCH--HHH---HH--------HH---------
T ss_conf 9999999999887740553210357999999999999998-8887500204--288---89--------99---------
Q ss_pred CCCHHHHCCC--CCCCCCHHHHHHHH------HHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHH
Q ss_conf 5501110179--99863112334443------21001112355705999999999731--18990999907531699999
Q 000464 1082 RNMNDFLQGK--NDDGFFQKDWWNDL------LHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIE 1151 (1479)
Q Consensus 1082 ~~~~d~~~~~--~~~~~~~~~~~~~l------l~~~~~~~i~~SgKl~~L~eIL~~~~--~~G~KVLIFSQ~~~tLdlLe 1151 (1479)
....+.... .............+ +..........++|+..|.++|.... ..+.|+|||++++.+++.|.
T Consensus 570 -~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~ 648 (936)
T 4a2w_A 570 -YLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALK 648 (936)
T ss_dssp -HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
T ss_conf -9999999876325887899999989999999997640567789799999999999853589974999969799999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99820999998763323796279841888999999999998088999714999634645434473446889999089993
Q 000464 1152 FYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231 (1479)
Q Consensus 1152 ~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNP 1231 (1479)
.+|...............|..+..++|+++..+|..++++|++ ++.++ +|++|+++++||||+.++.||+||++|||
T Consensus 649 ~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~--~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~ 725 (936)
T 4a2w_A 649 KCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNV 725 (936)
T ss_dssp HHHHHCSTTSSCCCEEC------------------------------CCS-EEEEECC------CCCCSEEEEESCCSCS
T ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHC--CCCEE-EEEEECCHHCCCCCHHCCEEEEECCCCCH
T ss_conf 9986373536666169965787656788899999999998631--59815-99980726427760558989993899988
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 249887473410299885899999828997999999999999999988054
Q 000464 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282 (1479)
Q Consensus 1232 s~d~QAIGRv~RiGQkK~V~VYRLIt~gTIEEkIy~rq~~K~~La~rVVd~ 1282 (1479)
..+.|++|| ||.+++.+|.|++.+|+|++.+ .+..|..++..++..
T Consensus 726 ~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 726 TKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp HHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 999996487----7888877999986988999999-988999999999998
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=317.18 Aligned_cols=488 Identities=14% Similarity=0.127 Sum_probs=272.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CCCEEEEECH-HHHHH
Q ss_conf 211309899999999999998554303799985539991988518999999999999830248-9726999063-46999
Q 000464 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG-LRTALIVTPV-NVLHN 798 (1479)
Q Consensus 721 ~~~LkPhQl~GV~fL~e~~~esl~r~k~~~~g~GgILADeMGLGKTLQaIAlI~~ll~~~~~~-~k~vLIVvP~-SLl~n 798 (1479)
...|+|||..++.++. .+..+|++++||+|||++++..+...+.....+ .+++|||||. .|+.|
T Consensus 5 ~~~~~~~Q~~~i~~~~--------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 70 (556)
T 4a2p_A 5 TKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQ 70 (556)
T ss_dssp ---CCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf 7787799999999997--------------49989998199971899999999999983745679869999288999999
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH-HCCCCCEE
Q ss_conf 99999984899999809999348535699999999961598999802200012346321113468998754-11799999
Q 000464 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA-LQDGPDIL 877 (1479)
Q Consensus 799 W~~Ei~kw~P~~~~~l~V~~l~~~~~~~r~~~l~~w~~~~gVlIisYe~lr~ls~~k~~kd~~~~~~i~~l-L~~~~dlV 877 (1479)
|..+|.+|++.. .+++..+++..... .....+....+|+|+|++.+....... .+ ....+++|
T Consensus 71 ~~~~~~~~~~~~--~~~~~~~~g~~~~~--~~~~~~~~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~~v 134 (556)
T 4a2p_A 71 QKNVFKHHFERQ--GYSVQGISGENFSN--VSVEKVIEDSDIIVVTPQILVNSFEDG------------TLTSLSIFTLM 134 (556)
T ss_dssp HHHHHHHHHGGG--TCCEEECCCC-------CHHHHHHHCSEEEECHHHHHHHHHSS------------SCCCSTTCSEE
T ss_pred HHHHHHHHHCCC--CCEEEEEECCCCCC--HHHHHHHCCCCEEEECHHHHHHHHHHC------------CCCCCCCCCEE
T ss_conf 999999872406--94599982898742--228986179999998899999999837------------50250307799
Q ss_pred EECCCCCCCCCCHHHHHHHHH-C--------CCCEEEEEECCCCCCCHHHHH-------HHHHHHCCC----CCCCHHHH
Q ss_conf 992873138951079999983-3--------246299951788865056788-------654311169----88882789
Q 000464 878 VCDEAHMIKNTRADTTQALKQ-V--------KCQRRIALTGSPLQNNLMEYY-------CMVDFVREG----FLGSSHEF 937 (1479)
Q Consensus 878 IiDEAH~IKN~~Sk~skalk~-L--------kt~rRilLTGTPLqNnL~EL~-------sLl~FL~P~----~Lgs~~eF 937 (1479)
|+||||++.+.... ...+.. + ...++++|||||.+++..++. .+...+.+. .-.....+
T Consensus 135 ViDEah~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~ 213 (556)
T 4a2p_A 135 IFDECHNTTGNHPY-NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 213 (556)
T ss_dssp EEETGGGCSTTSHH-HHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHH
T ss_pred EEECCCCCCCCCHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHH
T ss_conf 99887535886459-99999999853013688876999947856675166999999999999853984843332026778
Q ss_pred HHHHCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 842048755678899--884789999887999999974875430166674119997289997339999999999999750
Q 000464 938 RNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH 1015 (1479)
Q Consensus 938 ~~~F~~PI~~g~~~d--st~~dvk~~~~rs~~L~~~L~~fv~Rr~~~dv~~~LPpK~e~vi~v~LS~~Qr~LY~~~l~~~ 1015 (1479)
...+..|........ ...............+...+..+.. +... .....+......|..++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~~g~~~~~~~~~~~ 279 (556)
T 4a2p_A 214 QRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS----------VDTL----SQNSKKDFGTQNYEHWIVVT 279 (556)
T ss_dssp HHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC-----------------------CCCSSHHHHHHHHHH
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH----------HHHH----HCCCCCCCCHHHHHHHHHHH
T ss_conf 742799853799827876775999999999999999988863----------2012----10333344335678999999
Q ss_pred CC----C--CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 55----4--53212378874299999999999448101000001699997555578875334421113688755011101
Q 000464 1016 GF----T--NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQ 1089 (1479)
Q Consensus 1016 ~~----~--~~~~~~~~~~~sll~~l~~LrkIcnHP~Ll~~~~~~~~~~~ed~dd~~sd~~~d~~~~~~~k~~~~~d~~~ 1089 (1479)
.. . ............+......+++. ++........ +.. . ...... ........
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~--~~~---~--------~~~~l~------~~~~~~~~ 339 (556)
T 4a2p_A 280 QRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RII---D--------ALSYLT------EFFTNVKN 339 (556)
T ss_dssp HHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CHH---H--------HHHHHH------HHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHH---H--------HHHHHH------HHHHHHHH
T ss_conf 99877640543201678999999999999999-9999886112--078---9--------999999------99999873
Q ss_pred CCCCCCCCHHHHHHHH------HHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCCCC
Q ss_conf 7999863112334443------21001112355705999999999731--189909999075316999999982099999
Q 000464 1090 GKNDDGFFQKDWWNDL------LHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPG 1161 (1479)
Q Consensus 1090 ~~~~~~~~~~~~~~~l------l~~~~~~~i~~SgKl~~L~eIL~~~~--~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~ 1161 (1479)
. ............+ +..........++|+..|.++|.... ..+.|+|||+++..+++.|..+|.......
T Consensus 340 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~ 417 (556)
T 4a2p_A 340 G--PYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 417 (556)
T ss_dssp S--CCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGG
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 3--79878999999876678876421037899996999999999998347998549999765899999999998587755
Q ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 87633237962798418889999999999980889997149996346454344734468899990899932498874734
Q 000464 1162 KQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRA 1241 (1479)
Q Consensus 1162 ~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~FN~~~n~~v~VlLISTkAGG~GLNLt~AnrVIi~D~~WNPs~d~QAIGRv 1241 (1479)
........|..+..++|+++..+|+.++++|++ ++.++ +|++|++++.|||++++++||+||+||||..+.|++||
T Consensus 418 ~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~--~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR- 493 (556)
T 4a2p_A 418 YIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR- 493 (556)
T ss_dssp SCCEEC--------------------------------CC-EEEEEC-----------CEEEEETCCSCHHHHHHC----
T ss_pred EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC--CCCEE-EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-
T ss_conf 000147873677655656698999999998404--69658-99976704337775217889991899978899886387-
Q ss_pred HHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 102998858999998289979999999999999999880543
Q 000464 1242 WRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1283 (1479)
Q Consensus 1242 ~RiGQkK~V~VYRLIt~gTIEEkIy~rq~~K~~La~rVVd~~ 1283 (1479)
|+.+++.+|.|++.++++++ +..+..|..++..++..-
T Consensus 494 ---gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~i 531 (556)
T 4a2p_A 494 ---GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI 531 (556)
T ss_dssp --------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf ---87888418999827636777-775579999999999972
Done!