Query 000465
Match_columns 1478
No_of_seqs 158 out of 903
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 16:30:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000465.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_244-247//hhsearch_pdb/000465hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nyb_A Poly(A) RNA polymerase 1.0 1 1 305.4 22.3 202 1192-1471 2-203 (323)
2 3pq1_A Poly(A) RNA polymerase; 1.0 1 1 304.5 21.1 198 1211-1469 132-340 (464)
3 3hj4_A Minor editosome-associa 1.0 1 1 291.4 18.1 192 1210-1471 4-198 (384)
4 4e8f_A Poly(A) RNA polymerase 1.0 1 1 283.4 22.2 184 1211-1468 42-226 (405)
5 4fh3_A Poly(A) RNA polymerase 1.0 1 1 279.4 20.6 186 1211-1470 14-199 (349)
6 2ikf_A RNA uridylyl transferas 1.0 1 1 275.6 19.5 191 1211-1469 26-223 (353)
7 2b4v_A RNA editing complex pro 1.0 1 1 273.9 20.8 242 1210-1470 17-315 (468)
8 1q79_A Poly(A) polymerase alph 1.0 1 1 238.7 18.3 184 1211-1471 36-263 (514)
9 2hhp_A Poly(A) polymerase; tem 1.0 1 1 238.5 18.2 183 1211-1471 23-250 (530)
10 1r89_A TRNA nucleotidyltransfe 1.0 1 1 76.8 18.9 168 1215-1464 5-182 (437)
No 1
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=305.45 Aligned_cols=202 Identities=25% Similarity=0.437 Sum_probs=173.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 98667688751001237899999999999988222399611999999999999997118998088833444699889997
Q 000465 1192 QPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSD 1271 (1478)
Q Consensus 1192 QpP~m~~CP~~k~sLs~i~s~LheEI~aF~kyVaPEeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSsATGLaLPsSD 1271 (1478)
|-||+.+..+.+. ..+.+.||+||.+|++++.|+.++++ .|+.++++|+++++..||+++|++|||+++|+++|+||
T Consensus 2 ~~pw~~~~~~~~~--~~~~~~L~~Ei~~f~~~i~Pt~eE~~-~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SD 78 (323)
T 3nyb_A 2 SYPWILNHDHSKQ--KEISDWLTFEIKDFVAYISPSREEIE-IRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSD 78 (323)
T ss_dssp CCGGGTTCCCTTC--SSHHHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSC
T ss_pred CCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 9998648774545--33999999999999998696999999-99999999999999988998799957635599899998
Q ss_pred EEEEEECCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCC
Q ss_conf 06999748988976100002223554306899999999997068744677365057870089999816601231100267
Q 000465 1272 VDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSV 1351 (1478)
Q Consensus 1272 IDLVV~lPpvrNlEPiKeAGIlE~RNgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~v 1351 (1478)
||++|..+... .+. ...|..+++.|++.+++. ++++|.+|||||||+++
T Consensus 79 iDl~v~~~~~~----------~~~-----~~~l~~l~~~L~~~~~~~--~v~~I~~ArVPIIk~~~-------------- 127 (323)
T 3nyb_A 79 IDCVVTSELGG----------KES-----RNNLYSLASHLKKKNLAT--EVEVVAKARVPIIKFVE-------------- 127 (323)
T ss_dssp EEEEECSSCCG----------GGH-----HHHHHHHHHHHHHTTSCS--SCEEEESSSCEEEEEEE--------------
T ss_pred CEEEEECCCCC----------HHH-----HHHHHHHHHHHHHCCCCE--EEEEEECCCCCEEEEEE--------------
T ss_conf 14999548887----------167-----899999999985579842--79997515787799997--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 89753222223346776555321235889987778887531355540787986279963899999999998629980579
Q 000465 1352 QSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPL 1431 (1478)
Q Consensus 1352 qS~~eeSv~Ii~e~rsp~~Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnPshtGLrSSeLIreYlsqfPaLRPL 1431 (1478)
..+++.|||||++ .+|++++++|+.|+..+|++|+|
T Consensus 128 ------------------------------------------~~~gi~vDIs~~~--~~g~~~t~li~~~~~~~~~~r~l 163 (323)
T 3nyb_A 128 ------------------------------------------PHSGIHIAVSFER--TNGIEAAKLIREWLDDTPGLREL 163 (323)
T ss_dssp ------------------------------------------TTTTEEEEEESSC--SSTTHHHHHHHHHHHSCTTHHHH
T ss_pred ------------------------------------------CCCCCEEEEEECC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------------5778068888437--38999999999997752528899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999996599988889878699999999999205878
Q 000465 1432 ALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHL 1471 (1478)
Q Consensus 1432 VLVLKqWLKqRGLNdsysGGLSSYALVLMVIaFLQl~hhL 1471 (1478)
++++|+|++.+||++++.||||||+|++||++|||++|..
T Consensus 164 v~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~ 203 (323)
T 3nyb_A 164 VLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRI 203 (323)
T ss_dssp HHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999997499976579847799999999999748866
No 2
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.53 Aligned_cols=198 Identities=16% Similarity=0.266 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHCC
Q ss_conf 99999999999882223996119999999999999971189980888334446998899970699974898897610000
Q 000465 1211 SLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEA 1290 (1478)
Q Consensus 1211 s~LheEI~aF~kyVaPEeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSsATGLaLPsSDIDLVV~lPpvrNlEPiKeA 1290 (1478)
+.|++||.+|+++++|++++.+ .|..++++|+++++.+||+++|++|||++|||++|+|||||||..+.....+..+..
T Consensus 132 ~sl~~EI~~f~~~i~PT~eE~~-~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~ 210 (464)
T 3pq1_A 132 ESIDDQLNTLLKEFQLTEENTK-LRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKIS 210 (464)
T ss_dssp SSHHHHHHHHHHHHBCCHHHHH-HHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEE
T ss_pred CHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 2178999999998699999999-999999999999998789987999687724888999995799964775555432356
Q ss_pred C-C-CC--------CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 2-2-23--------554306899999999997068744677365057870089999816601231100267897532222
Q 000465 1291 G-I-LE--------GRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAH 1360 (1478)
Q Consensus 1291 G-I-lE--------~RNgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~vqS~~eeSv~ 1360 (1478)
| + ++ .|.. ...+|..+++.|++.+-. +.+++.|.+||||||||++
T Consensus 211 g~~~le~~~k~l~seR~~-~~~iL~~la~~L~~~~~~-~~~v~~I~~ARVPIIKf~~----------------------- 265 (464)
T 3pq1_A 211 GNFLMEFQVKNVPSERIA-TQKILSVLGECLDHFGPG-CVGVQKILNARCPLVRFSH----------------------- 265 (464)
T ss_dssp CC---EECCCCCSCHHHH-HHHHHHHHHHHHHHSSTT-EEEEEEECSSSSCEEEEEE-----------------------
T ss_pred CCHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCEEEEEE-----------------------
T ss_conf 631345541244356778-999999999999843899-7326885378987799998-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 23346776555321235889987778887531355540787986279963899999999998629980579999999999
Q 000465 1361 TTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLA 1440 (1478)
Q Consensus 1361 Ii~e~rsp~~Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnPshtGLrSSeLIreYlsqfPaLRPLVLVLKqWLK 1440 (1478)
..+++.|||||++ ..|++++.+|+.|...+|++|+|++++|+|++
T Consensus 266 ---------------------------------~~tgi~~DIS~nn--~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak 310 (464)
T 3pq1_A 266 ---------------------------------QASGFQCALTTNN--RIALTSSELLYIYGALDSRVRALVFSVRCWAR 310 (464)
T ss_dssp ---------------------------------TTTCCEEEEECSC--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------CCCCEEEEEECCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---------------------------------5788389984688--72899999999998748218899999999999
Q ss_pred HCCCCCCCCCC-CCHHHHHHHHHHHHHHCC
Q ss_conf 65999888898-786999999999992058
Q 000465 1441 DRSLDQSYSGG-LSSYCLMLLITRFLQHEH 1469 (1478)
Q Consensus 1441 qRGLNdsysGG-LSSYALVLMVIaFLQl~h 1469 (1478)
.++||+++.|| |+||+|++|||+|||++.
T Consensus 311 ~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ 340 (464)
T 3pq1_A 311 AHSLTSSIPGAWITNFSLTMMVIFFLQRRS 340 (464)
T ss_dssp HTTSSCC--CCSCCHHHHHHHHHHHHHSCC
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 809986566997673999999999997159
No 3
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=1.00 E-value=1 Score=291.35 Aligned_cols=192 Identities=15% Similarity=0.224 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHC
Q ss_conf 99999999999988222399611999999999999997118998088833444699889997069997489889761000
Q 000465 1210 HSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKE 1289 (1478)
Q Consensus 1210 ~s~LheEI~aF~kyVaPEeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSsATGLaLPsSDIDLVV~lPpvrNlEPiKe 1289 (1478)
...||+||.+|++|++|+.++.. .|+.++++|+++|+..||+++|++|||++|||++|+||||+||..+..... .+
T Consensus 4 ~~~lt~EI~dFy~~i~PT~eE~~-~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~--~~- 79 (384)
T 3hj4_A 4 KREFIRGMMAHYRASLPPPEHSV-VIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPW--LQ- 79 (384)
T ss_dssp HHHHHHHHHHHHHHHSCCTTHHH-HHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGG--GT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCC--CC-
T ss_conf 66789999999997399989999-999999999999998789967999514557898999985699963787642--23-
Q ss_pred CCCCCCCCCHHHHHH--HHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 022235543068999--999999970687446773650578700899998166012311002678975322222334677
Q 000465 1290 AGILEGRNGIKETCL--QHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDN 1367 (1478)
Q Consensus 1290 AGIlE~RNgIKEtiL--qkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~vqS~~eeSv~Ii~e~rs 1367 (1478)
+ .+.+.. ...+ ..+++.+...++ ..+. |.+||||||||++
T Consensus 80 -~-~~~~~~--~~~lrll~L~k~~~~~~i---e~V~-ii~ARVPIIKf~d------------------------------ 121 (384)
T 3hj4_A 80 -G-MERVDE--QNNKRMTRFGKEASAMGM---EDVR-YIRARIPVVQFTD------------------------------ 121 (384)
T ss_dssp -T-CHHHHH--HHHHHHHHHHHHHHHHTC---EEEE-EECSSSCEEEEEC------------------------------
T ss_pred -C-CCHHHH--HHHHHHHHHHHHCCCCCE---EEEE-ECCCCCCEEEEEE------------------------------
T ss_conf -2-110567--889999999730433770---5873-3486457799998------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCC
Q ss_conf 65553212358899877788875313555407879862799638999999999986299-80579999999999659998
Q 000465 1368 HVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFP-ASTPLALVLKQFLADRSLDQ 1446 (1478)
Q Consensus 1368 p~~Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnPshtGLrSSeLIreYlsqfP-aLRPLVLVLKqWLKqRGLNd 1446 (1478)
..+++.|||||++ ..|+.++.+|+.|.+.+| ++|+|++++|+|++.++||+
T Consensus 122 --------------------------~~tgi~~DIS~nn--~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~ 173 (384)
T 3hj4_A 122 --------------------------GVTGIHCDVSIGN--IGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIA 173 (384)
T ss_dssp --------------------------TTTCCEEEEEECC--HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBC
T ss_pred --------------------------CCCCEEEEEEECC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf --------------------------6889079899626--504899999999874286989999999999999838997
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8889878699999999999205878
Q 000465 1447 SYSGGLSSYCLMLLITRFLQHEHHL 1471 (1478)
Q Consensus 1447 sysGGLSSYALVLMVIaFLQl~hhL 1471 (1478)
++.||||||+|++|||+|||+++.|
T Consensus 174 ~~~GgLsSYaL~lMVI~fLQ~~~vL 198 (384)
T 3hj4_A 174 PERSTFNSFTVTTMALMVLQELGLL 198 (384)
T ss_dssp GGGTSBCHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 6689940899999999999438989
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=1.00 E-value=1 Score=283.39 Aligned_cols=184 Identities=22% Similarity=0.301 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHCC
Q ss_conf 99999999999882223996119999999999999971189980888334446998899970699974898897610000
Q 000465 1211 SLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEA 1290 (1478)
Q Consensus 1211 s~LheEI~aF~kyVaPEeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSsATGLaLPsSDIDLVV~lPpvrNlEPiKeA 1290 (1478)
+.|+.||.+|++++.|+.++.+ .++.++.+|+.+++..||+++|++|||+++|+++|+||||++|..+... +
T Consensus 42 ~~L~~~i~~~~~~i~Pt~eE~~-~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~--~----- 113 (405)
T 4e8f_A 42 KEFTKFCYEVYNEIKISDKEFK-EKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV--Q----- 113 (405)
T ss_dssp HHHHHHHHHHHHHHBCCHHHHH-HHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCC--C-----
T ss_conf 9999999999998097999999-9999999999999987899779998555479989999978999726899--9-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22235543068999999999970687446773650578700899998166012311002678975322222334677655
Q 000465 1291 GILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVH 1370 (1478)
Q Consensus 1291 GIlE~RNgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~vqS~~eeSv~Ii~e~rsp~~ 1370 (1478)
. +.++..+++.|++.. .+++.|.+|||||||++.+...
T Consensus 114 -----~----~~~l~~l~~~L~~~~----~~v~~i~~ArVPIIK~~~d~~~----------------------------- 151 (405)
T 4e8f_A 114 -----S----DTIALQFYEELIAEG----FEGKFLQRARIPIIKLTSDTKN----------------------------- 151 (405)
T ss_dssp -----C----TTHHHHHHHHHHHTT----EEEEEEEETTEEEEEEEEESSS-----------------------------
T ss_pred -----H----HHHHHHHHHHHHHCC----CEEEEECCCCCCEEEEEECCCC-----------------------------
T ss_conf -----9----999999999998607----7448862577867999961477-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 53212358899877788875313555407879862799638999999999986299805799999999996599988889
Q 000465 1371 SDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSG 1450 (1478)
Q Consensus 1371 Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnPshtGLrSSeLIreYlsqfPaLRPLVLVLKqWLKqRGLNdsysG 1450 (1478)
....++.|||||++ ..|+.++.+++.|.+.+|++|+|+++||+|++.+||++++.|
T Consensus 152 ----------------------g~~~gi~~DIs~~n--~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~G 207 (405)
T 4e8f_A 152 ----------------------GFGASFQCDIGFNN--RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFG 207 (405)
T ss_dssp ----------------------SCCTTCCEEEEESC--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTT
T ss_pred ----------------------CCCCCEEEEEEECC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf ----------------------76686489876245--415777999999986187889999999999997489867579
Q ss_pred CCCHHHHHHHHHHHH-HHC
Q ss_conf 878699999999999-205
Q 000465 1451 GLSSYCLMLLITRFL-QHE 1468 (1478)
Q Consensus 1451 GLSSYALVLMVIaFL-Ql~ 1468 (1478)
|||||+|++||++|| |..
T Consensus 208 glsSY~l~lmvi~fLqQ~~ 226 (405)
T 4e8f_A 208 TLSSYGYVLMVLYYLIHVI 226 (405)
T ss_dssp SCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 8576999999999997235
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=1.00 E-value=1 Score=279.42 Aligned_cols=186 Identities=23% Similarity=0.311 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHCC
Q ss_conf 99999999999882223996119999999999999971189980888334446998899970699974898897610000
Q 000465 1211 SLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEA 1290 (1478)
Q Consensus 1211 s~LheEI~aF~kyVaPEeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSsATGLaLPsSDIDLVV~lPpvrNlEPiKeA 1290 (1478)
+.|.+.+.+++++++|++++.+ .|+.++++|+++|+..||+++|++|||++||+++|+||||++|..+....
T Consensus 14 ~el~~~~~~l~~~~~pt~~e~~-~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~------- 85 (349)
T 4fh3_A 14 KEFTKFCYEVYNEIKISDKEFK-EKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ------- 85 (349)
T ss_dssp HHHHHHHHHHHHHHBCCHHHHH-HHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSC-------
T ss_pred HHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCC-------
T ss_conf 9999999999997098999999-99999999999999988998999971144789997989779996588878-------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22235543068999999999970687446773650578700899998166012311002678975322222334677655
Q 000465 1291 GILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVH 1370 (1478)
Q Consensus 1291 GIlE~RNgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~vqS~~eeSv~Ii~e~rsp~~ 1370 (1478)
.+.....+...+..... +++.|.+|||||||++++..
T Consensus 86 ---------~~~~~~~~~~~~~~~~~----~~~~i~~ArVPiik~~~~~~------------------------------ 122 (349)
T 4fh3_A 86 ---------SDTIALQFYEELIAEGF----EGKFLQRARIPIIKLTSDTK------------------------------ 122 (349)
T ss_dssp ---------HHHHHHHHHHHHHHTTE----EEEEEEETTEEEEEEEEESS------------------------------
T ss_pred ---------HHHHHHHHHHHHHHHCC----CCEEEEEEEEEEEEEEECCC------------------------------
T ss_conf ---------58999999999875014----65575540433599984145------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 53212358899877788875313555407879862799638999999999986299805799999999996599988889
Q 000465 1371 SDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSG 1450 (1478)
Q Consensus 1371 Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnPshtGLrSSeLIreYlsqfPaLRPLVLVLKqWLKqRGLNdsysG 1450 (1478)
.....++.|||||++ .+|++++++|+.|...+|++|+|+++||+|++.+||++++.|
T Consensus 123 ---------------------~~~~~~~~~Dis~~~--~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G 179 (349)
T 4fh3_A 123 ---------------------NGFGASFQCDIGFNN--RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFG 179 (349)
T ss_dssp ---------------------SSSCTTCCEEEEESC--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGT
T ss_pred ---------------------CCCCCCCEEECCCCC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf ---------------------664356245467676--268889999999862087788999999999998499986789
Q ss_pred CCCHHHHHHHHHHHHHHCCC
Q ss_conf 87869999999999920587
Q 000465 1451 GLSSYCLMLLITRFLQHEHH 1470 (1478)
Q Consensus 1451 GLSSYALVLMVIaFLQl~hh 1470 (1478)
|||||+|++||++|||+...
T Consensus 180 ~lssy~l~lmvi~fLQ~~~~ 199 (349)
T 4fh3_A 180 TLSSYGYVLMVLYYLIHVIK 199 (349)
T ss_dssp SCCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 87729999999999973467
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=1.00 E-value=1 Score=275.61 Aligned_cols=191 Identities=21% Similarity=0.338 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCEEEEEECCCCCCCCCHHC
Q ss_conf 9999999999988222399611999999999999997118998088833444-699889997069997489889761000
Q 000465 1211 SLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNA-TGLSLPSSDVDLVVCLPPVRNLEPIKE 1289 (1478)
Q Consensus 1211 s~LheEI~aF~kyVaPEeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSsA-TGLaLPsSDIDLVV~lPpvrNlEPiKe 1289 (1478)
..|+.+|.++++...+...+.+ .|+.++++|+++|+.+||+++|++|||++ ||+++|+||||++|..+.. .+.
T Consensus 26 ~~l~~~l~~~~~~~~~~~~e~~-~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~--~~~--- 99 (353)
T 2ikf_A 26 AVVGRSLVNSFKQFVSKDLHTR-HVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTD--VED--- 99 (353)
T ss_dssp HHHHHHHHHHTTTTCC-----C-CHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHH--HHS---
T ss_pred HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCC--CCC---
T ss_conf 9999999999998558701199-9999999999999998899089982376416889987662389862555--566---
Q ss_pred CCCCCC-C----CCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 022235-5----43068999999999970687446773650578700899998166012311002678975322222334
Q 000465 1290 AGILEG-R----NGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLK 1364 (1478)
Q Consensus 1290 AGIlE~-R----NgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~vqS~~eeSv~Ii~e 1364 (1478)
|..+. . ...+..+|..+++.|++.+++. +++.|.+|||||||+++
T Consensus 100 -~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~--~v~~i~~ArVPIiK~~~--------------------------- 149 (353)
T 2ikf_A 100 -GKGGDAATQVAKGLQADILAKLARVIRQKHLSW--NVEEVRRTRVPVVRVKG--------------------------- 149 (353)
T ss_dssp -TTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTS--EEEEECSSSSCEEEEEC---------------------------
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCEEEEEEEC---------------------------
T ss_conf -644330244555669999999999998368887--46994246636999985---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 67765553212358899877788875313555407879862799638999999999986299805799999999996599
Q 000465 1365 HDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSL 1444 (1478)
Q Consensus 1365 ~rsp~~Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnPshtGLrSSeLIreYlsqfPaLRPLVLVLKqWLKqRGL 1444 (1478)
.+++.|||||++ .+|++++++|+.|...+|++|+|++++|+|++.|||
T Consensus 150 ------------------------------~~~i~~Dis~~n--~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l 197 (353)
T 2ikf_A 150 ------------------------------GGAVDFDITAYR--RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGL 197 (353)
T ss_dssp ------------------------------SSSCEEEEEESC--CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTC
T ss_pred ------------------------------CCCCEEEEEECC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf ------------------------------897179988258--538999999999998692299999999999998699
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 98888-98786999999999992058
Q 000465 1445 DQSYS-GGLSSYCLMLLITRFLQHEH 1469 (1478)
Q Consensus 1445 Ndsys-GGLSSYALVLMVIaFLQl~h 1469 (1478)
++++. |||+||+|++||++|||+..
T Consensus 198 ~~~~~gG~lssy~l~lmvi~~LQ~~~ 223 (353)
T 2ikf_A 198 NASVIGGSITSYGFNLMVVYYLLQRN 223 (353)
T ss_dssp BTTSTTCCBCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98777998349999999999997268
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=1.00 E-value=1 Score=273.92 Aligned_cols=242 Identities=12% Similarity=0.151 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCEEEEEECCCCCCCCCH
Q ss_conf 99999999999988222-39961199999999999999711899808883344-46998899970699974898897610
Q 000465 1210 HSLLHEEIDSFCKQVAA-ENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSN-ATGLSLPSSDVDLVVCLPPVRNLEPI 1287 (1478)
Q Consensus 1210 ~s~LheEI~aF~kyVaP-EeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSs-ATGLaLPsSDIDLVV~lPpvrNlEPi 1287 (1478)
...|+..|.++.....+ |++.|. +..++++|+.+++.+||+++|++|||+ ++||++|+||||||+..+... +.
T Consensus 17 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~---~~ 91 (468)
T 2b4v_A 17 YAVWGKAIMAENNRRVGPEHMFRT--AIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPY---PS 91 (468)
T ss_dssp HHHHHHHHHHHHHHHBCCHHHHHH--HHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSS---CC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCCEEEEEECCCCC---CC
T ss_conf 999999999999724998899999--9999999999999977994899841731027899998636898348877---66
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEEECCCCCCEEEEEEECCCCHH-----H----H----H-HCCCC
Q ss_conf 000222355430689999999999706--87446773650578700899998166012-----3----1----1-00267
Q 000465 1288 KEAGILEGRNGIKETCLQHAARYLANQ--EWVKSDSLKTVENTAIPIIMLVVEVPHDL-----I----A----S-AASSV 1351 (1478)
Q Consensus 1288 KeAGIlE~RNgIKEtiLqkLAR~LRr~--g~vk~~sVkvI~kARVPIIKLv~~VP~Dl-----i----~----~-ys~~v 1351 (1478)
+. .....+.++++.|++. ++. +.++++|.+|||||||++... .|- . . . .....
T Consensus 92 ------~~---~~~~~~~~l~~~L~~~~~~~~-~~~v~~I~~ArVPIIK~~~~~-~d~~~~~~~~~l~~~~~~~~~~~l~ 160 (468)
T 2b4v_A 92 ------HE---VQAKRTDKLRTVIKRYVPHYL-RNNLLGLTEARTPVVKLRFAN-DEKVARARYTPLSEEEDRKARTALL 160 (468)
T ss_dssp ------HH---HHHHHHHHHHHHHHTTSCHHH-HTTEEEECSSSSCEEEECCCC-HHHHHHHHHSCCCHHHHHHHTEEEE
T ss_pred ------CH---HHHHHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------11---357789999999997224665-210586157874369999546-6532111123333332322100000
Q ss_pred ------CCCCC-CCC-------C--CCCCCCCCCCCCC-CCCCC-------------CCCCCC--------CCCCCCCCC
Q ss_conf ------89753-222-------2--2334677655532-12358-------------899877--------788875313
Q 000465 1352 ------QSPKE-DAA-------H--TTLKHDNHVHSDM-VALDD-------------SASPKC--------SHTSSDNIK 1393 (1478)
Q Consensus 1352 ------qS~~e-eSv-------~--Ii~e~rsp~~Sd~-~~~Eg-------------S~sP~C--------sp~n~ds~d 1393 (1478)
...++ +++ + -+.+++..+.-++ ...+. ...... -..+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~ 240 (468)
T 2b4v_A 161 DVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVP 240 (468)
T ss_dssp EEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCC
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111112210000011002112222122345655430132156410222100134321012232222122332222465
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 5554078798627996389999999999862998-0579999999999659998888987869999999999920587
Q 000465 1394 AATSVRLDISFKSPSHTGLQTTDLVKELTEQFPA-STPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHH 1470 (1478)
Q Consensus 1394 ~~tgI~VDISFNnPshtGLrSSeLIreYlsqfPa-LRPLVLVLKqWLKqRGLNdsysGGLSSYALVLMVIaFLQl~hh 1470 (1478)
..++++|||||+ ..|++|+++|+.|.+.+|+ +|+|+++||+|++.++||+++.||||||+|++|||+|||+..+
T Consensus 241 ~~~gi~~DISfn---~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~ 315 (468)
T 2b4v_A 241 EMFMYRWDISFV---GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQ 315 (468)
T ss_dssp GGGSSCEEEESC---SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEECC---HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 456627997446---469999999999984383989999999999999869997467980289999999999986276
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=1.00 E-value=1 Score=238.70 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCCEEEEECCCCCCCCCCCCCE
Q ss_conf 9999999999988--22239961199999999999999711----------------89980888334446998899970
Q 000465 1211 SLLHEEIDSFCKQ--VAAENTARKPYINWAVKRVTRSLQVL----------------WPRSRTNIFGSNATGLSLPSSDV 1272 (1478)
Q Consensus 1211 s~LheEI~aF~ky--VaPEeeeRK~~Ie~AIkRIerIIQsL----------------fPdARV~IFGSsATGLaLPsSDI 1272 (1478)
..++.+|..+.+. +.|+.++.+ .|+.++.+|+++|+.. .++++|++|||+++|+++|+|||
T Consensus 36 ~~~t~~L~~~l~~~~~~ps~ee~~-~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDI 114 (514)
T 1q79_A 36 ALLTQKLVETLKPFGVFEEEEELQ-RRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADI 114 (514)
T ss_dssp HHHHHHHHHHHGGGTCSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCE
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCE
T ss_conf 875899999999748999989999-9999999999999999998876507861111367835998402225887998864
Q ss_pred EEEEECCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCCC
Q ss_conf 69997489889761000022235543068999999999970687446773650578700899998166012311002678
Q 000465 1273 DLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQ 1352 (1478)
Q Consensus 1273 DLVV~lPpvrNlEPiKeAGIlE~RNgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~vq 1352 (1478)
|+++..|..-. .+..+..+...|++...+. +++.|.+|+||||||+.
T Consensus 115 D~~~v~p~~~~----------------~~dff~~l~~~L~~~~~v~--~v~~I~~A~VPIIK~~~--------------- 161 (514)
T 1q79_A 115 DALCVAPRHVD----------------RSDFFTSFYDKLKLQEEVK--DLRAVEEAFVPVIKLCF--------------- 161 (514)
T ss_dssp EEEEEECTTSC----------------HHHHTTHHHHHHHTCTTEE--EEEEETTSSSCEEEEEE---------------
T ss_pred EEEEECCCCCC----------------HHHHHHHHHHHHHCCCCCC--EEEEECCCCCCEEEEEE---------------
T ss_conf 48994477678----------------8999999999985286674--69983578605799998---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-------------------------
Q ss_conf 9753222223346776555321235889987778887531355540787986279-------------------------
Q 000465 1353 SPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSP------------------------- 1407 (1478)
Q Consensus 1353 S~~eeSv~Ii~e~rsp~~Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnP------------------------- 1407 (1478)
.++.|||+|++.
T Consensus 162 -------------------------------------------~gi~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~ 198 (514)
T 1q79_A 162 -------------------------------------------DGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRAI 198 (514)
T ss_dssp -------------------------------------------TTEEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHHHH
T ss_pred -------------------------------------------CCEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCHHHH
T ss_conf -------------------------------------------9851799970377656752246775365406666665
Q ss_pred -CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -9638999999999986299805799999999996599988889878699999999999205878
Q 000465 1408 -SHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHL 1471 (1478)
Q Consensus 1408 -shtGLrSSeLIreYlsqfPaLRPLVLVLKqWLKqRGLNdsysGGLSSYALVLMVIaFLQl~hhL 1471 (1478)
+.+|++.+++|..++..++.||+++++||+|+++||||+++.||||||+|++||++|||++|..
T Consensus 199 ~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~ 263 (514)
T 1q79_A 199 RSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 43000789999999756747789999999999997588743457763899999999999707899
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=1.00 E-value=1 Score=238.54 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHC----------C-------CCEEEEECCCCCCCCCCCCC
Q ss_conf 9999999999988--222399611999999999999997118----------9-------98088833444699889997
Q 000465 1211 SLLHEEIDSFCKQ--VAAENTARKPYINWAVKRVTRSLQVLW----------P-------RSRTNIFGSNATGLSLPSSD 1271 (1478)
Q Consensus 1211 s~LheEI~aF~ky--VaPEeeeRK~~Ie~AIkRIerIIQsLf----------P-------dARV~IFGSsATGLaLPsSD 1271 (1478)
..++.+|.++.+. +.|+.++.+ .|+.++.+|+++++. | | +++|++|||+++|+++|+||
T Consensus 23 ~~~~~~L~~~l~~~~~~ps~ee~~-~R~~vl~~L~~lv~~-w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SD 100 (530)
T 2hhp_A 23 NKLNDSLIQELKKEGSFETEQETA-NRVQVLKILQELAQR-FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSD 100 (530)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 653699999999828999989999-999999999999999-999887750787222035683599943103588899986
Q ss_pred EEEEEECCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCC
Q ss_conf 06999748988976100002223554306899999999997068744677365057870089999816601231100267
Q 000465 1272 VDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSV 1351 (1478)
Q Consensus 1272 IDLVV~lPpvrNlEPiKeAGIlE~RNgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~v 1351 (1478)
||+++..|..-. .+..+..++..|++...+. +++.|.+|+||||||+.
T Consensus 101 ID~~v~~p~~~~----------------~~dff~~l~~~L~~~~~v~--~v~~I~~A~VPIIK~~~-------------- 148 (530)
T 2hhp_A 101 IDTLVVVPKHVT----------------REDFFTVFDSLLRERKELD--EIAPVPDAFVPIIKIKF-------------- 148 (530)
T ss_dssp EEEEEEECTTCC----------------HHHHHHHHHHHHHTCTTEE--EEEEETTSSSCEEEEEE--------------
T ss_pred EEEEEECCCCCC----------------HHHHHHHHHHHHHCCCCCC--EEEEECCCCCCEEEEEE--------------
T ss_conf 458994377688----------------8999999999985487772--69995588604799998--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC------------------------
Q ss_conf 89753222223346776555321235889987778887531355540787986279------------------------
Q 000465 1352 QSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSP------------------------ 1407 (1478)
Q Consensus 1352 qS~~eeSv~Ii~e~rsp~~Sd~~~~EgS~sP~Csp~n~ds~d~~tgI~VDISFNnP------------------------ 1407 (1478)
.++.+||+|++.
T Consensus 149 --------------------------------------------~gi~vDL~f~~~~~~~ip~~l~l~~~~~L~~ld~~~ 184 (530)
T 2hhp_A 149 --------------------------------------------SGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKD 184 (530)
T ss_dssp --------------------------------------------TTEEEEEEEEECSSSCBCTTCCSCCGGGGTTCCHHH
T ss_pred --------------------------------------------CCEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCHHH
T ss_conf --------------------------------------------997268998315655677334788535542566555
Q ss_pred --CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf --9638999999999986299805799999999996599988889878699999999999205878
Q 000465 1408 --SHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHL 1471 (1478)
Q Consensus 1408 --shtGLrSSeLIreYlsqfPaLRPLVLVLKqWLKqRGLNdsysGGLSSYALVLMVIaFLQl~hhL 1471 (1478)
+.+|++.+++|..++..++.||.++++||+|+++||||+++.||||||+|++||++|||++|..
T Consensus 185 ~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~ 250 (530)
T 2hhp_A 185 LRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNA 250 (530)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTC
T ss_pred HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 320100789999999756737789999999999997588743436774899999999998237899
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=1.00 E-value=1 Score=76.77 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHCCCCC
Q ss_conf 9999999882223996119999999999999971189980888334446998899-970699974898897610000222
Q 000465 1215 EEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPS-SDVDLVVCLPPVRNLEPIKEAGIL 1293 (1478)
Q Consensus 1215 eEI~aF~kyVaPEeeeRK~~Ie~AIkRIerIIQsLfPdARV~IFGSsATGLaLPs-SDIDLVV~lPpvrNlEPiKeAGIl 1293 (1478)
+-+..|.+.+.|+.++++. +..+.+.|...|+. ++ .++.+.||++-|.+|++ +|||+.|.++....
T Consensus 5 ~~~~~~l~~i~P~~~E~~~-~~~~~~~I~~~L~~-~~-~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~---------- 71 (437)
T 1r89_A 5 EILEKALELVIPDEEEVRK-GREAEEELRRRLDE-LG-VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS---------- 71 (437)
T ss_dssp HHHHHHHHHHSCCHHHHHH-HHHHHHHHHHHHHH-HT-CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC----------
T ss_pred HHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHH-CC-CEEEEECCCCCCCCCCCCCCCEEEEECCCCCC----------
T ss_conf 9999999761979899999-99999999999983-78-70898134358973799987029999389988----------
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35543068999999999970687446773650578700899998166012311002678975322222334677655532
Q 000465 1294 EGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDM 1373 (1478)
Q Consensus 1294 E~RNgIKEtiLqkLAR~LRr~g~vk~~sVkvI~kARVPIIKLv~~VP~Dli~~ys~~vqS~~eeSv~Ii~e~rsp~~Sd~ 1373 (1478)
++.+++.-+..+...+++ .+ +.-|.-|=|...
T Consensus 72 --~e~l~~~~l~~~~e~l~~--------~~-~~ya~hpyV~~~------------------------------------- 103 (437)
T 1r89_A 72 --KEELRERGLEIGKAVLDS--------YE-IRYAEHPYVHGV------------------------------------- 103 (437)
T ss_dssp --HHHHHHHHHHHHHHHSSS--------EE-EEESSSEEEEEE-------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHH--------HH-HHCCCCCEEEEE-------------------------------------
T ss_conf --899988789999999987--------64-000688669998-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEE--EEECC----CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCC
Q ss_conf 12358899877788875313555407879--86279----96389999999999862998-0579999999999659998
Q 000465 1374 VALDDSASPKCSHTSSDNIKAATSVRLDI--SFKSP----SHTGLQTTDLVKELTEQFPA-STPLALVLKQFLADRSLDQ 1446 (1478)
Q Consensus 1374 ~~~EgS~sP~Csp~n~ds~d~~tgI~VDI--SFNnP----shtGLrSSeLIreYlsqfPa-LRPLVLVLKqWLKqRGLNd 1446 (1478)
..++++|| ++.-. ..+++.-|.+-..|+.+... ++.++.+||+|++..++.+
T Consensus 104 ---------------------f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~yg 162 (437)
T 1r89_A 104 ---------------------VKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIYG 162 (437)
T ss_dssp ---------------------ETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCBC
T ss_pred ---------------------ECCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf ---------------------66658999977875687666552358689999998601432458799999998579678
Q ss_pred C--CCCCCCHHHHHHHHHHH
Q ss_conf 8--88987869999999999
Q 000465 1447 S--YSGGLSSYCLMLLITRF 1464 (1478)
Q Consensus 1447 s--ysGGLSSYALVLMVIaF 1464 (1478)
+ ..+|++||.+-||+++|
T Consensus 163 se~k~~gfSsYllELLv~~y 182 (437)
T 1r89_A 163 AEYKVRGFSGYLCELLIVFY 182 (437)
T ss_dssp CSTTTCCBCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 75527889889999999998
Done!