Query 000467
Match_columns 1476
No_of_seqs 623 out of 3190
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-219 3E-224 2031.9 100.1 1306 2-1419 5-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 1E-184 3E-189 1739.1 68.2 705 2-734 29-818 (821)
3 KOG0161 Myosin class II heavy 100.0 4E-167 8E-172 1637.9 89.2 696 3-729 27-812 (1930)
4 cd01384 MYSc_type_XI Myosin mo 100.0 5E-170 1E-174 1590.0 58.4 611 74-692 1-674 (674)
5 KOG0160 Myosin class V heavy c 100.0 1E-169 3E-174 1558.3 60.5 688 72-781 6-758 (862)
6 cd01377 MYSc_type_II Myosin mo 100.0 2E-166 4E-171 1568.4 58.1 604 72-688 3-693 (693)
7 cd01381 MYSc_type_VII Myosin m 100.0 1E-166 3E-171 1561.0 55.9 598 75-688 1-671 (671)
8 KOG0164 Myosin class I heavy c 100.0 3E-166 6E-171 1435.0 52.6 666 72-762 6-755 (1001)
9 KOG0163 Myosin class VI heavy 100.0 4E-163 9E-168 1406.0 77.5 717 4-762 2-834 (1259)
10 cd01380 MYSc_type_V Myosin mot 100.0 4E-166 8E-171 1564.6 57.0 601 75-688 1-691 (691)
11 cd01383 MYSc_type_VIII Myosin 100.0 2E-165 4E-170 1549.8 56.5 597 72-688 6-677 (677)
12 cd01378 MYSc_type_I Myosin mot 100.0 6E-165 1E-169 1550.1 56.3 600 75-688 1-674 (674)
13 cd01382 MYSc_type_VI Myosin mo 100.0 2E-163 4E-168 1542.4 57.5 600 73-687 3-715 (717)
14 cd01379 MYSc_type_III Myosin m 100.0 2E-163 4E-168 1525.6 56.8 596 75-688 1-653 (653)
15 cd01387 MYSc_type_XV Myosin mo 100.0 2E-163 4E-168 1534.0 56.2 598 74-688 1-677 (677)
16 cd01385 MYSc_type_IX Myosin mo 100.0 3E-163 7E-168 1535.2 58.4 600 73-688 6-688 (692)
17 smart00242 MYSc Myosin. Large 100.0 1E-159 2E-164 1510.6 57.9 605 72-689 4-677 (677)
18 cd00124 MYSc Myosin motor doma 100.0 2E-158 4E-163 1504.7 56.2 599 75-688 1-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 2E-158 4E-163 1498.2 55.1 597 76-688 2-767 (767)
20 KOG0162 Myosin class I heavy c 100.0 2E-158 4E-163 1368.6 44.9 636 72-722 16-725 (1106)
21 PF00063 Myosin_head: Myosin h 100.0 8E-150 2E-154 1445.7 49.9 590 76-677 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 1E-103 3E-108 995.8 23.6 689 72-782 59-1007(1062)
23 KOG1892 Actin filament-binding 100.0 2E-30 4.2E-35 308.8 22.3 298 1080-1443 553-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 8.1E-28 1.8E-32 236.4 6.3 105 1294-1401 1-105 (105)
25 KOG0161 Myosin class II heavy 99.2 6.5E-07 1.4E-11 122.5 52.9 230 585-830 577-843 (1930)
26 cd01363 Motor_domain Myosin an 98.6 3.9E-08 8.4E-13 107.5 6.8 90 144-242 8-98 (186)
27 KOG0160 Myosin class V heavy c 98.6 1.4E-06 3.1E-11 111.0 21.1 86 741-829 673-758 (862)
28 COG5022 Myosin heavy chain [Cy 98.6 2.6E-05 5.6E-10 102.5 30.8 89 741-829 745-834 (1463)
29 KOG0520 Uncharacterized conser 98.3 6.9E-07 1.5E-11 113.7 7.6 128 691-835 808-937 (975)
30 PF02736 Myosin_N: Myosin N-te 98.0 1E-05 2.2E-10 65.4 6.1 36 6-42 1-36 (42)
31 KOG0520 Uncharacterized conser 97.9 2.6E-05 5.6E-10 99.8 9.9 129 694-828 757-905 (975)
32 KOG0971 Microtubule-associated 97.8 0.053 1.2E-06 68.4 33.7 47 855-901 309-355 (1243)
33 KOG1029 Endocytic adaptor prot 97.6 0.035 7.6E-07 68.8 27.8 78 932-1009 432-516 (1118)
34 KOG0971 Microtubule-associated 97.3 0.086 1.9E-06 66.7 27.7 28 1265-1292 898-925 (1243)
35 KOG1029 Endocytic adaptor prot 97.2 0.48 1E-05 59.4 30.8 24 1314-1337 1008-1031(1118)
36 KOG0164 Myosin class I heavy c 97.2 0.0027 5.9E-08 77.8 12.0 82 741-832 696-787 (1001)
37 PF09726 Macoilin: Transmembra 97.1 0.23 5.1E-06 64.5 29.5 23 988-1010 631-653 (697)
38 PRK11637 AmiB activator; Provi 97.1 0.16 3.5E-06 63.1 27.3 17 980-996 234-250 (428)
39 KOG0250 DNA repair protein RAD 97.0 2.3 5E-05 56.3 38.1 128 877-1006 336-463 (1074)
40 KOG4229 Myosin VII, myosin IXB 97.0 0.00058 1.2E-08 90.1 4.4 268 562-831 644-1008(1062)
41 KOG0996 Structural maintenance 96.9 3.2 7E-05 55.1 37.4 50 1348-1400 1168-1220(1293)
42 TIGR02169 SMC_prok_A chromosom 96.8 2.3 5E-05 60.0 39.1 27 973-999 400-426 (1164)
43 PF14662 CCDC155: Coiled-coil 96.8 0.16 3.4E-06 54.4 19.7 76 933-1008 63-138 (193)
44 PRK11637 AmiB activator; Provi 96.7 0.61 1.3E-05 58.0 28.0 32 974-1005 221-252 (428)
45 PF00612 IQ: IQ calmodulin-bin 96.7 0.0021 4.6E-08 43.9 3.4 20 790-809 2-21 (21)
46 KOG0933 Structural maintenance 96.6 0.74 1.6E-05 59.7 27.6 61 948-1008 798-858 (1174)
47 PF12718 Tropomyosin_1: Tropom 96.6 0.31 6.8E-06 50.8 20.4 25 976-1000 112-136 (143)
48 KOG0163 Myosin class VI heavy 96.6 1.2 2.6E-05 55.8 27.9 20 717-736 814-833 (1259)
49 PRK04863 mukB cell division pr 96.6 4 8.6E-05 57.8 36.8 31 976-1006 446-476 (1486)
50 KOG2128 Ras GTPase-activating 96.5 0.072 1.6E-06 71.0 18.2 19 1320-1338 1191-1209(1401)
51 KOG0250 DNA repair protein RAD 96.5 5.6 0.00012 52.9 38.6 74 933-1006 375-449 (1074)
52 PF09726 Macoilin: Transmembra 96.5 3.2 6.9E-05 54.3 32.7 68 939-1006 589-656 (697)
53 KOG0933 Structural maintenance 96.4 6 0.00013 51.9 34.3 22 166-191 30-51 (1174)
54 KOG0925 mRNA splicing factor A 96.3 0.003 6.4E-08 74.8 3.9 56 114-178 24-79 (699)
55 PF08317 Spc7: Spc7 kinetochor 96.3 1.4 2.9E-05 52.8 26.5 39 930-968 209-247 (325)
56 TIGR02169 SMC_prok_A chromosom 96.3 10 0.00022 53.6 46.4 6 1140-1145 617-622 (1164)
57 KOG0980 Actin-binding protein 96.3 0.71 1.5E-05 59.1 24.0 35 1353-1392 850-887 (980)
58 PF07888 CALCOCO1: Calcium bin 96.2 1.4 3.1E-05 54.9 26.4 19 616-634 39-57 (546)
59 PF07888 CALCOCO1: Calcium bin 96.2 0.75 1.6E-05 57.3 23.8 28 981-1008 285-312 (546)
60 PHA02562 46 endonuclease subun 96.2 1.6 3.6E-05 56.3 28.7 14 613-626 43-56 (562)
61 PF12718 Tropomyosin_1: Tropom 96.2 0.82 1.8E-05 47.7 20.7 62 934-995 77-138 (143)
62 KOG0994 Extracellular matrix g 96.2 7 0.00015 51.6 32.2 24 110-133 206-229 (1758)
63 COG1196 Smc Chromosome segrega 96.1 11 0.00024 53.0 39.6 34 967-1000 455-488 (1163)
64 KOG4643 Uncharacterized coiled 96.1 1.3 2.8E-05 57.5 25.4 14 850-863 412-425 (1195)
65 KOG2128 Ras GTPase-activating 96.0 0.092 2E-06 70.1 15.7 89 723-811 542-644 (1401)
66 TIGR02168 SMC_prok_B chromosom 96.0 13 0.00028 52.5 39.7 9 656-664 125-133 (1179)
67 COG1579 Zn-ribbon protein, pos 95.9 0.5 1.1E-05 53.0 18.7 23 935-957 57-79 (239)
68 PRK02224 chromosome segregatio 95.9 5.8 0.00013 54.3 33.2 12 1404-1415 823-834 (880)
69 PF00612 IQ: IQ calmodulin-bin 95.9 0.0091 2E-07 40.8 3.1 18 743-760 3-20 (21)
70 PRK03918 chromosome segregatio 95.9 1.5 3.2E-05 60.0 27.4 17 164-180 26-42 (880)
71 PHA02562 46 endonuclease subun 95.8 2.8 6.1E-05 54.2 28.4 23 932-954 301-323 (562)
72 COG4372 Uncharacterized protei 95.8 5.6 0.00012 46.7 28.6 24 975-998 255-278 (499)
73 TIGR02168 SMC_prok_B chromosom 95.7 17 0.00036 51.5 40.9 6 1141-1146 596-601 (1179)
74 PF00261 Tropomyosin: Tropomyo 95.7 5.3 0.00011 45.6 26.8 35 969-1003 180-214 (237)
75 PRK09039 hypothetical protein; 95.6 2.1 4.5E-05 51.5 23.9 49 930-978 130-178 (343)
76 PF15070 GOLGA2L5: Putative go 95.6 4.3 9.3E-05 52.4 27.5 26 932-957 155-180 (617)
77 PF14662 CCDC155: Coiled-coil 95.5 4.5 9.7E-05 43.7 26.4 102 905-1009 80-188 (193)
78 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.5 2.2 4.7E-05 44.1 20.3 33 977-1009 96-128 (132)
79 COG4942 Membrane-bound metallo 95.4 9.1 0.0002 46.5 27.4 27 973-999 218-244 (420)
80 KOG0994 Extracellular matrix g 95.4 10 0.00023 50.2 28.9 36 971-1006 1709-1744(1758)
81 PF15066 CAGE1: Cancer-associa 95.3 5.2 0.00011 48.2 24.7 16 409-424 50-65 (527)
82 PRK09039 hypothetical protein; 95.3 1.4 3E-05 53.0 20.7 64 933-996 119-182 (343)
83 smart00787 Spc7 Spc7 kinetocho 95.2 6.7 0.00014 46.5 25.4 26 968-993 235-260 (312)
84 COG4372 Uncharacterized protei 95.1 9.2 0.0002 45.0 28.4 30 966-995 253-282 (499)
85 PRK04863 mukB cell division pr 95.0 28 0.0006 49.8 39.4 12 623-634 125-136 (1486)
86 KOG1853 LIS1-interacting prote 94.7 8.5 0.00018 42.7 24.8 13 996-1008 167-179 (333)
87 KOG0999 Microtubule-associated 94.7 5.9 0.00013 48.4 23.0 13 1139-1151 490-502 (772)
88 PF14915 CCDC144C: CCDC144C pr 94.7 11 0.00023 43.5 28.0 133 878-1010 84-238 (305)
89 smart00015 IQ Short calmodulin 94.7 0.036 7.7E-07 40.0 3.1 21 789-809 3-23 (26)
90 TIGR00606 rad50 rad50. This fa 94.6 6.5 0.00014 56.1 28.0 21 162-182 29-49 (1311)
91 KOG4643 Uncharacterized coiled 94.6 14 0.00031 48.6 27.4 28 947-974 526-553 (1195)
92 PF09728 Taxilin: Myosin-like 94.6 13 0.00028 44.1 28.4 46 964-1009 222-267 (309)
93 PRK03918 chromosome segregatio 94.5 22 0.00048 48.7 32.2 15 1404-1418 824-838 (880)
94 PF15619 Lebercilin: Ciliary p 94.5 9.4 0.0002 42.1 24.1 32 931-962 119-150 (194)
95 PTZ00014 myosin-A; Provisional 94.5 0.092 2E-06 69.4 8.7 42 789-830 777-818 (821)
96 PF00261 Tropomyosin: Tropomyo 94.5 11 0.00025 42.9 25.6 51 952-1002 177-227 (237)
97 PF04091 Sec15: Exocyst comple 94.4 0.19 4.1E-06 59.5 10.3 133 1263-1396 176-311 (311)
98 PF10473 CENP-F_leu_zip: Leuci 94.3 5.2 0.00011 41.5 19.0 21 879-899 18-38 (140)
99 PF13207 AAA_17: AAA domain; P 94.3 0.032 6.9E-07 56.2 3.1 23 163-185 1-23 (121)
100 PF13851 GAS: Growth-arrest sp 94.3 8.3 0.00018 42.8 22.1 59 911-969 74-132 (201)
101 KOG0964 Structural maintenance 94.3 7.4 0.00016 50.9 23.8 45 962-1006 332-376 (1200)
102 KOG1853 LIS1-interacting prote 94.3 11 0.00023 41.9 22.6 24 983-1006 161-184 (333)
103 PF05701 WEMBL: Weak chloropla 94.2 12 0.00026 47.8 26.5 15 932-946 339-353 (522)
104 PF06785 UPF0242: Uncharacteri 94.1 9.8 0.00021 44.0 22.1 23 877-899 98-120 (401)
105 KOG0980 Actin-binding protein 94.1 26 0.00057 45.7 32.7 27 563-589 225-252 (980)
106 PF10481 CENP-F_N: Cenp-F N-te 94.1 3.9 8.3E-05 46.0 18.4 31 978-1008 161-191 (307)
107 KOG0976 Rho/Rac1-interacting s 94.0 12 0.00025 47.9 24.1 23 973-995 418-440 (1265)
108 PF09789 DUF2353: Uncharacteri 93.8 18 0.00038 42.8 24.9 29 981-1009 191-219 (319)
109 PF08317 Spc7: Spc7 kinetochor 93.8 19 0.00042 43.1 26.7 55 939-993 211-265 (325)
110 PRK02224 chromosome segregatio 93.8 38 0.00082 46.5 41.9 12 673-684 132-143 (880)
111 PF08614 ATG16: Autophagy prot 93.7 0.69 1.5E-05 51.0 12.3 64 929-1006 115-178 (194)
112 PF05667 DUF812: Protein of un 93.6 7.5 0.00016 50.0 22.8 34 971-1004 446-479 (594)
113 KOG0964 Structural maintenance 93.6 34 0.00073 45.2 27.8 73 932-1004 413-492 (1200)
114 TIGR00606 rad50 rad50. This fa 93.6 23 0.00049 50.8 29.9 9 317-325 140-148 (1311)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 10 0.00022 39.1 19.7 66 930-995 59-128 (132)
116 COG1196 Smc Chromosome segrega 93.5 50 0.0011 46.7 46.7 50 949-998 444-493 (1163)
117 KOG0612 Rho-associated, coiled 93.5 21 0.00046 48.2 26.3 16 1272-1287 1023-1038(1317)
118 KOG1103 Predicted coiled-coil 93.3 8.7 0.00019 44.3 19.8 48 959-1006 246-293 (561)
119 PF13401 AAA_22: AAA domain; P 93.2 0.063 1.4E-06 54.7 2.9 29 159-187 2-30 (131)
120 PF15254 CCDC14: Coiled-coil d 93.2 6.7 0.00015 50.2 20.5 50 933-982 490-539 (861)
121 KOG0977 Nuclear envelope prote 93.1 21 0.00045 45.0 24.7 19 1134-1152 313-331 (546)
122 smart00015 IQ Short calmodulin 93.1 0.093 2E-06 37.8 2.8 19 742-760 4-22 (26)
123 PF00038 Filament: Intermediat 93.0 24 0.00053 41.9 27.5 173 833-1008 12-252 (312)
124 PF15066 CAGE1: Cancer-associa 92.9 28 0.00061 42.3 24.0 27 840-866 332-358 (527)
125 KOG0977 Nuclear envelope prote 92.9 30 0.00066 43.6 25.6 16 882-897 110-125 (546)
126 PRK07196 fliI flagellum-specif 92.9 0.19 4.2E-06 61.6 6.9 42 144-185 138-179 (434)
127 PF13191 AAA_16: AAA ATPase do 92.9 0.077 1.7E-06 57.4 3.2 33 156-188 19-51 (185)
128 KOG0612 Rho-associated, coiled 92.8 22 0.00048 48.0 25.1 20 1288-1307 980-999 (1317)
129 PF13238 AAA_18: AAA domain; P 92.8 0.078 1.7E-06 53.6 2.9 22 164-185 1-22 (129)
130 KOG0995 Centromere-associated 92.8 34 0.00074 42.9 29.6 24 805-828 265-288 (581)
131 PF04849 HAP1_N: HAP1 N-termin 92.7 11 0.00023 44.1 20.1 54 931-984 235-288 (306)
132 PRK01156 chromosome segregatio 92.7 30 0.00066 47.5 28.5 79 928-1006 354-443 (895)
133 PF12128 DUF3584: Protein of u 92.7 64 0.0014 45.8 40.9 15 1404-1418 1066-1081(1201)
134 PRK04778 septation ring format 92.7 8.5 0.00018 49.8 21.8 11 669-679 59-69 (569)
135 PF13851 GAS: Growth-arrest sp 92.6 20 0.00043 39.8 26.5 25 935-959 105-129 (201)
136 PF05667 DUF812: Protein of un 92.6 10 0.00022 48.9 21.7 37 975-1011 443-479 (594)
137 KOG0995 Centromere-associated 92.5 23 0.00049 44.3 23.4 12 631-642 103-114 (581)
138 KOG4673 Transcription factor T 92.5 38 0.00083 42.9 30.2 11 832-842 477-487 (961)
139 cd02019 NK Nucleoside/nucleoti 92.5 0.11 2.3E-06 47.1 3.1 22 164-185 2-23 (69)
140 PF04111 APG6: Autophagy prote 92.4 1.9 4.2E-05 51.1 14.3 13 1267-1279 289-301 (314)
141 TIGR02322 phosphon_PhnN phosph 92.4 0.098 2.1E-06 56.7 3.2 25 162-186 2-26 (179)
142 TIGR03015 pepcterm_ATPase puta 92.4 0.14 3E-06 59.4 4.6 28 159-186 41-68 (269)
143 KOG0999 Microtubule-associated 92.3 29 0.00064 42.8 23.3 20 968-987 197-216 (772)
144 cd00009 AAA The AAA+ (ATPases 92.2 0.18 3.8E-06 51.6 4.8 29 158-186 16-44 (151)
145 PF04849 HAP1_N: HAP1 N-termin 92.2 15 0.00033 42.9 20.4 10 997-1006 294-303 (306)
146 PF13870 DUF4201: Domain of un 92.1 20 0.00044 38.9 24.2 22 878-899 49-70 (177)
147 KOG0018 Structural maintenance 92.0 57 0.0012 43.8 30.9 45 583-631 26-75 (1141)
148 COG0444 DppD ABC-type dipeptid 92.0 0.095 2.1E-06 60.9 2.7 28 159-186 29-56 (316)
149 PF04156 IncA: IncA protein; 92.0 6.9 0.00015 43.0 17.3 22 977-998 163-184 (191)
150 KOG4674 Uncharacterized conser 92.0 79 0.0017 45.4 32.6 72 930-1004 1307-1378(1822)
151 PF04156 IncA: IncA protein; 92.0 6.6 0.00014 43.1 17.1 10 885-894 88-97 (191)
152 PF00769 ERM: Ezrin/radixin/mo 92.0 9.3 0.0002 43.8 18.6 17 883-899 10-26 (246)
153 TIGR00150 HI0065_YjeE ATPase, 91.8 0.25 5.4E-06 50.9 5.1 27 159-185 20-46 (133)
154 PF09730 BicD: Microtubule-ass 91.8 28 0.0006 45.6 24.2 11 1140-1150 394-404 (717)
155 KOG1962 B-cell receptor-associ 91.6 1.7 3.6E-05 48.0 11.4 59 935-993 149-207 (216)
156 PRK06696 uridine kinase; Valid 91.6 0.24 5.2E-06 55.9 5.3 40 146-187 9-48 (223)
157 PF12325 TMF_TATA_bd: TATA ele 91.6 10 0.00022 38.4 16.0 32 962-993 79-110 (120)
158 KOG4360 Uncharacterized coiled 91.5 12 0.00026 45.7 19.0 73 934-1006 230-302 (596)
159 COG0194 Gmk Guanylate kinase [ 91.5 0.13 2.9E-06 55.2 2.8 25 161-185 4-28 (191)
160 PRK05480 uridine/cytidine kina 91.4 0.17 3.6E-06 56.4 3.8 27 159-185 4-30 (209)
161 cd00820 PEPCK_HprK Phosphoenol 91.4 0.16 3.5E-06 50.1 3.1 24 159-182 13-36 (107)
162 PF10186 Atg14: UV radiation r 91.4 14 0.0003 43.5 20.2 22 935-956 75-96 (302)
163 PLN03188 kinesin-12 family pro 91.4 57 0.0012 44.8 26.7 36 143-178 148-183 (1320)
164 KOG1003 Actin filament-coating 91.4 24 0.00053 38.2 24.6 70 930-999 109-185 (205)
165 cd01918 HprK_C HprK/P, the bif 91.3 0.16 3.6E-06 53.1 3.3 25 160-184 13-37 (149)
166 KOG2991 Splicing regulator [RN 91.2 29 0.00062 38.8 26.4 55 953-1007 252-306 (330)
167 PRK00300 gmk guanylate kinase; 91.2 0.15 3.2E-06 56.6 3.0 26 160-185 4-29 (205)
168 PRK01156 chromosome segregatio 91.1 78 0.0017 43.6 40.2 20 1270-1289 733-752 (895)
169 PF00485 PRK: Phosphoribulokin 91.1 0.15 3.2E-06 56.2 2.9 26 164-189 2-27 (194)
170 PF09789 DUF2353: Uncharacteri 91.1 21 0.00047 42.1 20.3 47 965-1011 126-172 (319)
171 cd01131 PilT Pilus retraction 91.0 0.16 3.5E-06 56.2 3.1 25 163-187 3-27 (198)
172 PF01583 APS_kinase: Adenylyls 91.0 0.24 5.1E-06 52.4 4.2 29 161-189 2-30 (156)
173 PF00004 AAA: ATPase family as 91.0 0.15 3.4E-06 51.6 2.8 23 164-186 1-23 (132)
174 cd02023 UMPK Uridine monophosp 91.0 0.16 3.5E-06 56.1 3.1 22 164-185 2-23 (198)
175 KOG0976 Rho/Rac1-interacting s 90.9 60 0.0013 41.9 30.4 18 880-897 325-342 (1265)
176 PRK09270 nucleoside triphospha 90.8 0.37 8E-06 54.6 5.8 34 157-190 29-62 (229)
177 PF06160 EzrA: Septation ring 90.8 62 0.0013 41.9 28.3 47 965-1011 386-432 (560)
178 PRK13833 conjugal transfer pro 90.7 0.26 5.7E-06 58.5 4.6 44 138-187 127-170 (323)
179 PF06785 UPF0242: Uncharacteri 90.7 39 0.00084 39.4 21.7 76 932-1007 136-222 (401)
180 PF10146 zf-C4H2: Zinc finger- 90.7 7.4 0.00016 44.0 15.7 37 932-968 41-77 (230)
181 PF10146 zf-C4H2: Zinc finger- 90.7 9 0.00019 43.3 16.4 72 930-1008 32-103 (230)
182 PTZ00301 uridine kinase; Provi 90.6 0.19 4.1E-06 56.1 3.2 23 164-186 6-28 (210)
183 KOG2129 Uncharacterized conser 90.6 45 0.00097 39.9 24.7 11 789-799 84-94 (552)
184 smart00787 Spc7 Spc7 kinetocho 90.5 44 0.00095 39.7 25.0 14 994-1007 272-285 (312)
185 cd01129 PulE-GspE PulE/GspE Th 90.5 0.29 6.2E-06 56.8 4.7 35 152-187 72-106 (264)
186 TIGR00235 udk uridine kinase. 90.5 0.23 4.9E-06 55.4 3.7 28 159-186 4-31 (207)
187 PF08614 ATG16: Autophagy prot 90.4 2 4.2E-05 47.5 10.9 53 929-981 122-174 (194)
188 TIGR01843 type_I_hlyD type I s 90.3 43 0.00094 41.3 24.1 20 988-1007 248-267 (423)
189 TIGR01843 type_I_hlyD type I s 90.3 41 0.00088 41.6 23.9 25 978-1002 245-269 (423)
190 PRK05541 adenylylsulfate kinas 90.3 0.22 4.7E-06 53.9 3.2 29 159-187 5-33 (176)
191 PRK08233 hypothetical protein; 90.2 0.18 3.9E-06 54.6 2.5 25 162-186 4-28 (182)
192 COG5185 HEC1 Protein involved 90.2 41 0.00088 40.9 21.5 33 1074-1106 489-521 (622)
193 PRK10884 SH3 domain-containing 90.1 3.3 7.2E-05 45.9 12.2 35 974-1008 134-168 (206)
194 COG2433 Uncharacterized conser 90.0 4.2 9.1E-05 50.8 13.9 76 931-1006 430-508 (652)
195 cd02028 UMPK_like Uridine mono 89.9 0.24 5.1E-06 54.0 3.2 24 164-187 2-25 (179)
196 KOG0996 Structural maintenance 89.9 91 0.002 42.4 42.5 17 478-494 208-224 (1293)
197 TIGR03420 DnaA_homol_Hda DnaA 89.9 0.44 9.5E-06 53.6 5.4 38 150-187 27-64 (226)
198 KOG4673 Transcription factor T 89.9 67 0.0015 40.9 31.9 48 935-982 709-756 (961)
199 cd02025 PanK Pantothenate kina 89.9 0.23 5E-06 55.9 3.1 23 164-186 2-24 (220)
200 COG5185 HEC1 Protein involved 89.9 33 0.00071 41.6 20.4 10 561-570 79-88 (622)
201 KOG4360 Uncharacterized coiled 89.8 15 0.00032 45.0 17.8 73 934-1006 223-295 (596)
202 TIGR02173 cyt_kin_arch cytidyl 89.8 0.22 4.7E-06 53.3 2.8 23 163-185 2-24 (171)
203 smart00382 AAA ATPases associa 89.8 0.22 4.8E-06 50.3 2.7 28 161-188 2-29 (148)
204 PRK12402 replication factor C 89.7 0.42 9.1E-06 57.3 5.4 56 129-186 6-61 (337)
205 PRK07261 topology modulation p 89.7 0.24 5.2E-06 53.5 3.0 23 163-185 2-24 (171)
206 PF04437 RINT1_TIP1: RINT-1 / 89.7 4.2 9.2E-05 51.7 14.6 125 1263-1393 352-491 (494)
207 cd02020 CMPK Cytidine monophos 89.7 0.26 5.5E-06 51.2 3.1 22 164-185 2-23 (147)
208 PF10168 Nup88: Nuclear pore c 89.7 33 0.00071 45.5 22.7 20 579-598 422-441 (717)
209 PRK04778 septation ring format 89.6 77 0.0017 41.2 35.5 11 849-859 226-236 (569)
210 COG1660 Predicted P-loop-conta 89.5 0.22 4.7E-06 55.9 2.4 19 163-181 3-21 (286)
211 PF04111 APG6: Autophagy prote 89.5 5.3 0.00012 47.5 14.2 22 984-1005 111-132 (314)
212 PRK06547 hypothetical protein; 89.5 0.5 1.1E-05 51.1 5.2 28 158-185 12-39 (172)
213 PRK06762 hypothetical protein; 89.5 0.31 6.7E-06 52.1 3.6 24 162-185 3-26 (166)
214 KOG0979 Structural maintenance 89.5 21 0.00046 47.3 20.0 18 880-897 204-221 (1072)
215 PHA02544 44 clamp loader, smal 89.3 0.42 9.1E-06 56.9 5.0 53 129-185 12-67 (316)
216 PF10186 Atg14: UV radiation r 89.3 20 0.00043 42.2 19.1 15 939-953 86-100 (302)
217 cd00227 CPT Chloramphenicol (C 89.3 0.31 6.8E-06 52.7 3.5 25 161-185 2-26 (175)
218 KOG1937 Uncharacterized conser 89.1 62 0.0013 39.4 23.9 14 994-1007 503-516 (521)
219 PRK10884 SH3 domain-containing 89.1 5.2 0.00011 44.4 12.8 10 883-892 98-107 (206)
220 KOG0963 Transcription factor/C 89.1 76 0.0016 40.4 27.6 11 996-1006 347-357 (629)
221 PF05701 WEMBL: Weak chloropla 89.1 79 0.0017 40.5 31.0 13 995-1007 339-351 (522)
222 PRK14737 gmk guanylate kinase; 89.1 0.27 5.8E-06 53.9 2.7 26 160-185 3-28 (186)
223 KOG0963 Transcription factor/C 89.0 77 0.0017 40.3 27.2 27 925-951 244-270 (629)
224 PRK08118 topology modulation p 89.0 0.32 6.9E-06 52.3 3.2 25 162-186 2-26 (167)
225 PF10481 CENP-F_N: Cenp-F N-te 88.9 17 0.00037 41.1 16.2 71 936-1006 59-129 (307)
226 PRK00131 aroK shikimate kinase 88.9 0.35 7.6E-06 51.8 3.5 26 160-185 3-28 (175)
227 PF12325 TMF_TATA_bd: TATA ele 88.8 20 0.00044 36.3 15.5 18 881-898 19-36 (120)
228 TIGR02782 TrbB_P P-type conjug 88.8 0.59 1.3E-05 55.2 5.6 43 139-187 116-158 (299)
229 KOG0978 E3 ubiquitin ligase in 88.8 88 0.0019 40.8 37.1 74 938-1011 546-619 (698)
230 PF10498 IFT57: Intra-flagella 88.8 13 0.00029 44.9 16.8 11 594-604 61-71 (359)
231 PRK14961 DNA polymerase III su 88.8 0.7 1.5E-05 56.2 6.4 54 129-186 7-63 (363)
232 PF07724 AAA_2: AAA domain (Cd 88.7 0.37 8E-06 52.0 3.5 24 163-186 5-28 (171)
233 PF03668 ATP_bind_2: P-loop AT 88.7 0.29 6.3E-06 56.4 2.8 19 162-180 2-20 (284)
234 cd02024 NRK1 Nicotinamide ribo 88.7 0.29 6.3E-06 53.6 2.7 22 164-185 2-23 (187)
235 cd01130 VirB11-like_ATPase Typ 88.7 0.3 6.5E-06 53.5 2.8 43 138-186 8-50 (186)
236 PRK10078 ribose 1,5-bisphospho 88.6 0.27 5.9E-06 53.8 2.4 24 162-185 3-26 (186)
237 cd00071 GMPK Guanosine monopho 88.6 0.27 5.9E-06 51.0 2.3 22 164-185 2-23 (137)
238 KOG0982 Centrosomal protein Nu 88.6 62 0.0013 39.1 21.2 19 877-895 249-267 (502)
239 PRK00889 adenylylsulfate kinas 88.5 0.48 1E-05 51.2 4.3 29 160-188 3-31 (175)
240 KOG0946 ER-Golgi vesicle-tethe 88.5 73 0.0016 41.5 23.1 19 366-384 144-162 (970)
241 KOG0804 Cytoplasmic Zn-finger 88.4 23 0.00049 42.9 17.8 14 495-508 120-133 (493)
242 PRK08084 DNA replication initi 88.4 0.7 1.5E-05 52.6 5.7 40 148-187 32-71 (235)
243 PF10174 Cast: RIM-binding pro 88.2 1.1E+02 0.0023 41.0 34.7 76 931-1006 466-541 (775)
244 PRK14738 gmk guanylate kinase; 88.2 0.38 8.2E-06 53.6 3.3 26 159-184 11-36 (206)
245 PF00910 RNA_helicase: RNA hel 88.1 0.37 7.9E-06 47.7 2.8 25 164-188 1-25 (107)
246 PTZ00121 MAEBL; Provisional 88.1 1.3E+02 0.0028 41.8 35.1 33 77-109 162-194 (2084)
247 PF13245 AAA_19: Part of AAA d 88.0 0.62 1.4E-05 43.1 4.1 28 160-187 9-36 (76)
248 PF00769 ERM: Ezrin/radixin/mo 88.0 19 0.00042 41.3 16.9 17 975-991 85-101 (246)
249 COG3883 Uncharacterized protei 88.0 56 0.0012 37.6 25.0 17 879-895 81-97 (265)
250 COG0572 Udk Uridine kinase [Nu 88.0 0.38 8.2E-06 53.4 3.0 26 161-186 6-33 (218)
251 PRK08472 fliI flagellum-specif 88.0 2.7 5.9E-05 51.8 10.7 41 145-185 141-181 (434)
252 COG2433 Uncharacterized conser 88.0 25 0.00054 44.3 18.5 7 1078-1084 636-642 (652)
253 TIGR00554 panK_bact pantothena 88.0 0.77 1.7E-05 53.7 5.7 29 159-187 60-88 (290)
254 TIGR01313 therm_gnt_kin carboh 87.9 0.3 6.4E-06 52.1 2.2 23 164-186 1-23 (163)
255 PF05729 NACHT: NACHT domain 87.9 0.42 9.2E-06 50.4 3.4 26 163-188 2-27 (166)
256 KOG4809 Rab6 GTPase-interactin 87.9 62 0.0013 40.2 21.2 23 875-897 335-357 (654)
257 COG4172 ABC-type uncharacteriz 87.9 0.29 6.3E-06 58.0 2.1 29 160-188 35-63 (534)
258 KOG0979 Structural maintenance 87.8 79 0.0017 42.3 23.5 28 1267-1294 836-864 (1072)
259 KOG4809 Rab6 GTPase-interactin 87.7 68 0.0015 39.9 21.3 79 928-1006 329-407 (654)
260 PRK13851 type IV secretion sys 87.7 0.44 9.6E-06 57.1 3.6 26 161-186 162-187 (344)
261 TIGR02928 orc1/cdc6 family rep 87.6 0.57 1.2E-05 56.9 4.6 36 152-187 31-66 (365)
262 KOG0804 Cytoplasmic Zn-finger 87.6 25 0.00054 42.6 17.5 14 614-627 102-115 (493)
263 TIGR01420 pilT_fam pilus retra 87.6 0.38 8.3E-06 58.0 3.1 26 161-186 122-147 (343)
264 PLN03025 replication factor C 87.4 0.68 1.5E-05 55.3 5.1 56 129-186 4-59 (319)
265 PRK10751 molybdopterin-guanine 87.4 0.46 1E-05 51.2 3.2 26 163-188 8-33 (173)
266 COG4608 AppF ABC-type oligopep 87.4 0.39 8.5E-06 54.7 2.7 32 159-190 37-68 (268)
267 PRK06217 hypothetical protein; 87.4 0.4 8.6E-06 52.3 2.8 24 163-186 3-26 (183)
268 cd02027 APSK Adenosine 5'-phos 87.3 0.47 1E-05 50.0 3.2 24 164-187 2-25 (149)
269 KOG4593 Mitotic checkpoint pro 87.2 1E+02 0.0022 39.7 29.9 24 788-811 85-108 (716)
270 TIGR03263 guanyl_kin guanylate 87.2 0.34 7.4E-06 52.4 2.1 24 162-185 2-25 (180)
271 PF14197 Cep57_CLD_2: Centroso 87.1 6.2 0.00014 35.8 9.7 63 935-997 3-65 (69)
272 PRK08972 fliI flagellum-specif 87.1 0.87 1.9E-05 55.9 5.7 40 145-184 146-185 (444)
273 PRK14956 DNA polymerase III su 87.1 0.73 1.6E-05 57.2 5.1 54 130-187 10-66 (484)
274 PF12846 AAA_10: AAA-like doma 87.1 0.49 1.1E-05 55.4 3.6 29 161-189 1-29 (304)
275 PRK03846 adenylylsulfate kinas 86.9 0.81 1.8E-05 50.6 4.9 31 158-188 21-51 (198)
276 COG1102 Cmk Cytidylate kinase 86.9 0.5 1.1E-05 49.6 2.9 23 164-186 3-25 (179)
277 PRK13900 type IV secretion sys 86.8 0.63 1.4E-05 55.7 4.3 25 162-186 161-185 (332)
278 PRK12377 putative replication 86.8 1 2.2E-05 51.6 5.8 45 142-188 84-128 (248)
279 TIGR02524 dot_icm_DotB Dot/Icm 86.7 0.47 1E-05 57.3 3.1 28 160-187 133-160 (358)
280 PF09755 DUF2046: Uncharacteri 86.6 73 0.0016 37.4 29.9 17 880-896 137-153 (310)
281 PRK00440 rfc replication facto 86.5 0.84 1.8E-05 54.2 5.2 55 130-186 9-63 (319)
282 PF03266 NTPase_1: NTPase; In 86.5 0.54 1.2E-05 50.6 3.2 24 164-187 2-25 (168)
283 cd00464 SK Shikimate kinase (S 86.5 0.49 1.1E-05 49.6 2.8 24 163-186 1-24 (154)
284 KOG4674 Uncharacterized conser 86.4 1.9E+02 0.004 41.9 39.9 40 875-914 795-834 (1822)
285 cd01120 RecA-like_NTPases RecA 86.4 0.57 1.2E-05 49.1 3.3 24 164-187 2-25 (165)
286 KOG0243 Kinesin-like protein [ 86.4 51 0.0011 44.5 21.1 19 317-335 99-117 (1041)
287 PF13671 AAA_33: AAA domain; P 86.3 0.42 9.2E-06 49.4 2.2 23 164-186 2-24 (143)
288 KOG0249 LAR-interacting protei 86.3 66 0.0014 41.3 20.7 24 1315-1346 756-780 (916)
289 COG0529 CysC Adenylylsulfate k 86.2 0.99 2.2E-05 48.1 4.7 33 157-189 19-51 (197)
290 PF03205 MobB: Molybdopterin g 86.1 0.62 1.3E-05 48.6 3.2 27 163-189 2-28 (140)
291 PF13870 DUF4201: Domain of un 86.1 55 0.0012 35.5 18.6 37 970-1006 96-132 (177)
292 cd02029 PRK_like Phosphoribulo 86.1 0.61 1.3E-05 53.5 3.4 25 164-188 2-26 (277)
293 PRK06645 DNA polymerase III su 86.1 0.89 1.9E-05 57.4 5.2 55 130-187 13-69 (507)
294 PF09755 DUF2046: Uncharacteri 86.1 78 0.0017 37.2 28.4 23 989-1011 181-203 (310)
295 TIGR02525 plasmid_TraJ plasmid 86.0 0.54 1.2E-05 57.0 3.2 27 161-187 149-175 (372)
296 PRK00411 cdc6 cell division co 85.9 0.86 1.9E-05 56.0 4.9 34 154-187 48-81 (394)
297 TIGR02902 spore_lonB ATP-depen 85.8 0.85 1.9E-05 58.2 4.9 31 156-186 81-111 (531)
298 PRK14964 DNA polymerase III su 85.7 0.97 2.1E-05 56.6 5.3 57 129-188 4-62 (491)
299 PTZ00112 origin recognition co 85.7 1.5 3.3E-05 57.3 6.9 45 144-188 764-808 (1164)
300 PRK08903 DnaA regulatory inact 85.6 1.2 2.6E-05 50.3 5.5 29 159-187 40-68 (227)
301 COG4477 EzrA Negative regulato 85.6 98 0.0021 38.7 21.4 62 930-991 347-408 (570)
302 COG0563 Adk Adenylate kinase a 85.5 0.63 1.4E-05 50.6 3.0 22 164-185 3-24 (178)
303 COG1124 DppF ABC-type dipeptid 85.4 0.64 1.4E-05 52.1 3.0 29 159-187 31-59 (252)
304 PF05911 DUF869: Plant protein 85.4 32 0.0007 45.6 18.8 132 874-1008 585-716 (769)
305 PRK07667 uridine kinase; Provi 85.4 0.69 1.5E-05 51.0 3.4 26 162-187 18-43 (193)
306 COG4172 ABC-type uncharacteriz 85.4 0.51 1.1E-05 56.0 2.4 30 159-188 311-340 (534)
307 PRK09111 DNA polymerase III su 85.3 0.81 1.8E-05 59.0 4.4 55 130-188 16-73 (598)
308 PF11559 ADIP: Afadin- and alp 85.3 37 0.0008 35.8 16.3 14 995-1008 135-148 (151)
309 PRK05896 DNA polymerase III su 85.3 1.1 2.4E-05 57.1 5.5 57 128-188 6-65 (605)
310 PF10174 Cast: RIM-binding pro 85.3 1.5E+02 0.0032 39.7 32.3 18 879-896 473-490 (775)
311 cd02021 GntK Gluconate kinase 85.3 0.59 1.3E-05 49.0 2.7 22 164-185 2-23 (150)
312 PF00437 T2SE: Type II/IV secr 85.2 0.57 1.2E-05 54.4 2.8 29 159-187 125-153 (270)
313 COG1123 ATPase components of v 85.0 0.51 1.1E-05 59.0 2.3 30 159-188 33-62 (539)
314 PRK11281 hypothetical protein; 84.9 1.1E+02 0.0023 42.8 24.0 25 984-1008 283-307 (1113)
315 COG1125 OpuBA ABC-type proline 84.9 0.48 1E-05 53.2 1.8 26 163-188 29-54 (309)
316 KOG0982 Centrosomal protein Nu 84.9 1E+02 0.0022 37.4 24.7 15 879-893 298-312 (502)
317 PF02367 UPF0079: Uncharacteri 84.9 0.74 1.6E-05 46.8 3.0 27 159-185 13-39 (123)
318 PF10226 DUF2216: Uncharacteri 84.9 57 0.0012 35.3 16.7 30 978-1007 107-136 (195)
319 PRK13894 conjugal transfer ATP 84.9 1.2 2.7E-05 52.9 5.4 27 161-187 148-174 (319)
320 TIGR01360 aden_kin_iso1 adenyl 84.8 0.7 1.5E-05 50.2 3.1 23 163-185 5-27 (188)
321 PRK05057 aroK shikimate kinase 84.7 0.75 1.6E-05 49.7 3.2 25 161-185 4-28 (172)
322 PRK09825 idnK D-gluconate kina 84.7 0.78 1.7E-05 49.8 3.3 26 161-186 3-28 (176)
323 PHA00729 NTP-binding motif con 84.5 1.4 3E-05 49.5 5.3 29 158-186 14-42 (226)
324 PRK04182 cytidylate kinase; Pr 84.5 0.67 1.5E-05 50.0 2.7 23 163-185 2-24 (180)
325 KOG1962 B-cell receptor-associ 84.5 17 0.00038 40.2 13.4 59 952-1010 152-210 (216)
326 PRK14955 DNA polymerase III su 84.5 1.4 3E-05 54.4 5.7 56 130-187 8-64 (397)
327 PRK13764 ATPase; Provisional 84.5 0.8 1.7E-05 58.6 3.7 27 161-187 257-283 (602)
328 PRK05342 clpX ATP-dependent pr 84.5 1.6 3.4E-05 53.9 6.2 63 123-185 59-132 (412)
329 TIGR02680 conserved hypothetic 84.3 2.3E+02 0.0049 41.0 36.2 27 162-188 25-51 (1353)
330 PRK04040 adenylate kinase; Pro 84.3 0.85 1.8E-05 50.1 3.4 25 162-186 3-27 (188)
331 PF07475 Hpr_kinase_C: HPr Ser 84.3 0.74 1.6E-05 49.1 2.8 23 161-183 18-40 (171)
332 PRK14732 coaE dephospho-CoA ki 84.2 0.87 1.9E-05 50.3 3.5 47 164-215 2-53 (196)
333 KOG3684 Ca2+-activated K+ chan 84.2 33 0.00072 41.8 16.4 38 773-810 348-385 (489)
334 PRK15453 phosphoribulokinase; 84.1 0.79 1.7E-05 53.0 3.2 26 161-186 5-30 (290)
335 PRK13342 recombination factor 84.1 1.1 2.4E-05 55.4 4.8 43 142-185 18-60 (413)
336 TIGR02533 type_II_gspE general 84.1 0.93 2E-05 57.1 4.1 35 151-186 233-267 (486)
337 COG2884 FtsE Predicted ATPase 84.1 0.74 1.6E-05 49.6 2.7 26 160-185 27-52 (223)
338 PF13555 AAA_29: P-loop contai 84.1 0.94 2E-05 40.1 2.9 21 163-183 25-45 (62)
339 TIGR02977 phageshock_pspA phag 84.0 75 0.0016 35.8 18.9 75 929-1003 98-183 (219)
340 PRK14527 adenylate kinase; Pro 84.0 0.86 1.9E-05 50.0 3.3 28 159-186 4-31 (191)
341 PF03215 Rad17: Rad17 cell cyc 83.8 1 2.2E-05 57.0 4.3 58 128-185 9-69 (519)
342 PF09730 BicD: Microtubule-ass 83.8 1.6E+02 0.0035 38.9 25.3 21 931-951 98-118 (717)
343 TIGR02903 spore_lon_C ATP-depe 83.7 1.5 3.2E-05 57.1 5.8 36 153-188 167-202 (615)
344 cd03115 SRP The signal recogni 83.7 1 2.3E-05 48.4 3.8 27 163-189 2-28 (173)
345 PRK14974 cell division protein 83.7 1.9 4.2E-05 51.5 6.3 31 159-189 138-168 (336)
346 PRK09099 type III secretion sy 83.7 1.7 3.6E-05 53.8 5.9 35 151-185 153-187 (441)
347 PF15254 CCDC14: Coiled-coil d 83.6 1.3E+02 0.0027 39.4 21.7 45 961-1005 504-548 (861)
348 PRK05537 bifunctional sulfate 83.5 1.2 2.5E-05 57.3 4.7 44 142-187 375-418 (568)
349 PRK14957 DNA polymerase III su 83.4 1.6 3.4E-05 55.7 5.7 56 129-187 7-64 (546)
350 PRK06315 type III secretion sy 83.4 1.3 2.8E-05 54.7 4.9 35 151-185 154-188 (442)
351 PRK06761 hypothetical protein; 83.4 0.77 1.7E-05 53.4 2.8 26 162-187 4-29 (282)
352 PF10205 KLRAQ: Predicted coil 83.4 18 0.00039 35.3 11.3 71 935-1005 3-73 (102)
353 PRK06893 DNA replication initi 83.3 1.8 3.9E-05 49.1 5.6 40 148-188 27-66 (229)
354 PRK05416 glmZ(sRNA)-inactivati 83.2 0.81 1.8E-05 53.6 2.9 22 161-182 6-27 (288)
355 PRK08727 hypothetical protein; 83.1 1.7 3.7E-05 49.4 5.4 31 158-188 38-68 (233)
356 PF06637 PV-1: PV-1 protein (P 83.1 36 0.00078 40.3 15.6 102 851-961 279-380 (442)
357 PRK04220 2-phosphoglycerate ki 83.0 1.4 3.1E-05 51.6 4.6 28 158-185 89-116 (301)
358 KOG2129 Uncharacterized conser 82.9 1.2E+02 0.0025 36.6 20.2 7 985-991 302-308 (552)
359 TIGR00176 mobB molybdopterin-g 82.9 1.1 2.3E-05 47.6 3.4 26 164-189 2-27 (155)
360 PRK08356 hypothetical protein; 82.8 0.81 1.7E-05 50.5 2.5 22 162-183 6-27 (195)
361 PF03193 DUF258: Protein of un 82.8 1.1 2.3E-05 47.8 3.3 25 160-184 34-58 (161)
362 cd02034 CooC The accessory pro 82.6 1.2 2.7E-05 44.7 3.6 26 164-189 2-27 (116)
363 PF08826 DMPK_coil: DMPK coile 82.6 16 0.00034 32.4 9.7 40 959-998 19-58 (61)
364 TIGR00064 ftsY signal recognit 82.6 2.3 5.1E-05 49.5 6.3 47 143-189 45-100 (272)
365 TIGR03499 FlhF flagellar biosy 82.5 1.2 2.6E-05 52.2 4.0 45 144-188 169-221 (282)
366 TIGR03185 DNA_S_dndD DNA sulfu 82.5 1.8E+02 0.0039 38.5 29.5 216 794-1009 170-465 (650)
367 PRK08154 anaerobic benzoate ca 82.4 1.7 3.6E-05 51.7 5.1 48 138-185 106-157 (309)
368 PF07728 AAA_5: AAA domain (dy 82.3 1 2.2E-05 46.6 2.9 22 164-185 2-23 (139)
369 PF04665 Pox_A32: Poxvirus A32 82.3 0.98 2.1E-05 51.2 3.0 25 163-187 15-39 (241)
370 PF00308 Bac_DnaA: Bacterial d 82.2 1.9 4.2E-05 48.5 5.3 41 148-188 19-61 (219)
371 COG0802 Predicted ATPase or ki 82.2 2.3 5E-05 44.4 5.4 29 159-187 23-51 (149)
372 PRK15093 antimicrobial peptide 82.1 1 2.2E-05 54.1 3.2 27 159-185 31-57 (330)
373 PRK11308 dppF dipeptide transp 82.1 1 2.2E-05 54.0 3.1 27 159-185 39-65 (327)
374 COG4619 ABC-type uncharacteriz 82.1 0.98 2.1E-05 47.7 2.6 25 160-184 28-52 (223)
375 COG1493 HprK Serine kinase of 82.0 1.1 2.3E-05 51.7 3.1 24 161-184 145-168 (308)
376 cd03293 ABC_NrtD_SsuB_transpor 82.0 1 2.2E-05 50.7 3.0 27 159-185 28-54 (220)
377 PF15070 GOLGA2L5: Putative go 81.9 1.8E+02 0.0038 38.1 31.2 11 1431-1441 594-604 (617)
378 TIGR02868 CydC thiol reductant 81.9 0.68 1.5E-05 59.3 1.7 29 159-187 359-387 (529)
379 PRK10646 ADP-binding protein; 81.9 2.2 4.8E-05 45.0 5.2 26 161-186 28-53 (153)
380 PF15619 Lebercilin: Ciliary p 81.8 89 0.0019 34.5 27.2 26 940-965 121-146 (194)
381 TIGR02673 FtsE cell division A 81.8 1.1 2.3E-05 50.1 3.1 27 159-185 26-52 (214)
382 TIGR00455 apsK adenylylsulfate 81.7 1.7 3.8E-05 47.3 4.6 29 159-187 16-44 (184)
383 PRK05688 fliI flagellum-specif 81.7 2.1 4.5E-05 53.0 5.7 41 144-184 151-191 (451)
384 PF00625 Guanylate_kin: Guanyl 81.7 1.2 2.6E-05 48.6 3.3 26 161-186 2-27 (183)
385 TIGR00960 3a0501s02 Type II (G 81.7 1.1 2.3E-05 50.2 3.1 27 159-185 27-53 (216)
386 PF09738 DUF2051: Double stran 81.7 55 0.0012 38.6 17.0 68 929-996 97-164 (302)
387 PRK00698 tmk thymidylate kinas 81.7 1.4 3.1E-05 48.6 4.0 28 161-188 3-30 (205)
388 PRK14969 DNA polymerase III su 81.6 1.8 4E-05 55.1 5.4 56 129-187 7-64 (527)
389 TIGR01166 cbiO cobalt transpor 81.6 1.1 2.5E-05 49.0 3.1 26 159-184 16-41 (190)
390 PF00158 Sigma54_activat: Sigm 81.6 1.6 3.6E-05 46.9 4.3 25 159-183 20-44 (168)
391 PRK15177 Vi polysaccharide exp 81.6 1.1 2.4E-05 50.1 3.1 27 159-185 11-37 (213)
392 PRK08116 hypothetical protein; 81.6 2.4 5.3E-05 49.2 6.0 47 142-188 94-141 (268)
393 PRK14958 DNA polymerase III su 81.5 1.9 4.2E-05 54.6 5.5 55 129-187 7-64 (509)
394 cd03116 MobB Molybdenum is an 81.5 1.5 3.2E-05 46.9 3.8 28 162-189 2-29 (159)
395 PRK10416 signal recognition pa 81.5 1.5 3.2E-05 52.3 4.2 31 159-189 112-142 (318)
396 TIGR02788 VirB11 P-type DNA tr 81.4 0.88 1.9E-05 54.0 2.3 26 160-185 143-168 (308)
397 PRK14528 adenylate kinase; Pro 81.4 1.3 2.7E-05 48.6 3.4 24 162-185 2-25 (186)
398 PF00005 ABC_tran: ABC transpo 81.4 1 2.2E-05 46.2 2.6 27 159-185 9-35 (137)
399 PRK09473 oppD oligopeptide tra 81.4 1 2.2E-05 54.0 2.9 27 159-185 40-66 (330)
400 PRK15079 oligopeptide ABC tran 81.4 1.1 2.4E-05 53.8 3.1 27 159-185 45-71 (331)
401 PRK14963 DNA polymerase III su 81.4 1.7 3.7E-05 55.0 4.9 55 130-187 6-62 (504)
402 KOG1899 LAR transmembrane tyro 81.2 1.5E+02 0.0033 37.5 20.6 20 1323-1342 709-728 (861)
403 cd03225 ABC_cobalt_CbiO_domain 81.2 1.2 2.6E-05 49.6 3.2 27 159-185 25-51 (211)
404 COG1123 ATPase components of v 81.1 1.1 2.4E-05 56.1 3.1 29 159-187 315-343 (539)
405 TIGR01359 UMP_CMP_kin_fam UMP- 81.1 1.1 2.5E-05 48.5 2.9 23 164-186 2-24 (183)
406 PRK14962 DNA polymerase III su 81.1 2.2 4.7E-05 53.6 5.7 53 130-186 6-61 (472)
407 cd03259 ABC_Carb_Solutes_like 81.0 1.2 2.6E-05 49.7 3.2 27 159-185 24-50 (213)
408 PRK04195 replication factor C 81.0 1.7 3.6E-05 55.1 4.8 26 160-185 38-63 (482)
409 COG2274 SunT ABC-type bacterio 81.0 0.79 1.7E-05 60.1 1.9 32 159-190 497-528 (709)
410 PF10168 Nup88: Nuclear pore c 80.9 1.8E+02 0.004 38.7 23.3 12 459-470 299-310 (717)
411 PRK09112 DNA polymerase III su 80.9 2.1 4.5E-05 51.8 5.3 40 148-187 31-71 (351)
412 PRK13768 GTPase; Provisional 80.9 1.3 2.9E-05 50.9 3.5 27 163-189 4-30 (253)
413 cd03260 ABC_PstB_phosphate_tra 80.8 1.3 2.7E-05 50.1 3.2 27 159-185 24-50 (227)
414 PLN02796 D-glycerate 3-kinase 80.8 1.2 2.5E-05 53.1 3.0 24 163-186 102-125 (347)
415 cd01124 KaiC KaiC is a circadi 80.8 1.3 2.8E-05 48.0 3.3 27 163-189 1-27 (187)
416 PRK14959 DNA polymerase III su 80.7 2 4.3E-05 55.3 5.2 55 129-187 7-64 (624)
417 PRK11022 dppD dipeptide transp 80.7 1.2 2.5E-05 53.4 3.1 28 159-186 31-58 (326)
418 cd03255 ABC_MJ0796_Lo1CDE_FtsE 80.6 1.3 2.7E-05 49.7 3.1 27 159-185 28-54 (218)
419 cd02026 PRK Phosphoribulokinas 80.6 1.2 2.6E-05 51.9 3.0 22 164-185 2-23 (273)
420 TIGR03608 L_ocin_972_ABC putat 80.5 1.3 2.8E-05 49.2 3.1 27 159-185 22-48 (206)
421 COG4088 Predicted nucleotide k 80.4 1.7 3.6E-05 47.5 3.7 25 164-188 4-28 (261)
422 PRK14950 DNA polymerase III su 80.4 2.3 4.9E-05 55.2 5.8 55 130-187 8-64 (585)
423 cd01983 Fer4_NifH The Fer4_Nif 80.4 1.6 3.5E-05 41.1 3.4 25 164-188 2-26 (99)
424 cd03229 ABC_Class3 This class 80.3 1.4 3E-05 47.9 3.2 27 159-185 24-50 (178)
425 PRK07721 fliI flagellum-specif 80.3 5 0.00011 49.8 8.4 41 145-185 142-182 (438)
426 KOG4593 Mitotic checkpoint pro 80.3 1.9E+02 0.0042 37.4 36.8 25 1377-1401 631-662 (716)
427 cd03296 ABC_CysA_sulfate_impor 80.3 1.3 2.8E-05 50.4 3.1 27 159-185 26-52 (239)
428 PRK03839 putative kinase; Prov 80.2 1.3 2.9E-05 47.9 3.1 22 164-185 3-24 (180)
429 PRK05439 pantothenate kinase; 80.2 2.9 6.2E-05 49.5 5.9 31 157-187 82-112 (311)
430 PRK14970 DNA polymerase III su 80.1 2.9 6.4E-05 50.9 6.3 58 128-187 7-65 (367)
431 KOG0056 Heavy metal exporter H 80.1 1.7 3.7E-05 52.7 4.0 32 160-191 563-594 (790)
432 smart00072 GuKc Guanylate kina 80.1 1.2 2.7E-05 48.5 2.8 23 163-185 4-26 (184)
433 TIGR03574 selen_PSTK L-seryl-t 80.1 1.3 2.9E-05 50.8 3.1 24 164-187 2-25 (249)
434 KOG0946 ER-Golgi vesicle-tethe 80.0 2.1E+02 0.0045 37.7 26.2 27 929-955 805-831 (970)
435 TIGR02881 spore_V_K stage V sp 80.0 1.5 3.2E-05 50.8 3.5 31 159-189 40-70 (261)
436 COG2805 PilT Tfp pilus assembl 79.9 1.4 3.1E-05 50.7 3.1 77 100-187 71-151 (353)
437 TIGR00678 holB DNA polymerase 79.9 2.4 5.2E-05 46.3 5.0 36 152-187 4-40 (188)
438 PLN02939 transferase, transfer 79.9 1.4E+02 0.0029 40.8 21.4 27 1387-1415 852-879 (977)
439 PRK00023 cmk cytidylate kinase 79.8 1.4 3E-05 49.9 3.1 26 161-186 4-29 (225)
440 PRK06305 DNA polymerase III su 79.8 2.7 5.9E-05 52.6 6.0 57 129-187 8-65 (451)
441 cd03235 ABC_Metallic_Cations A 79.8 1.3 2.8E-05 49.5 2.9 27 159-185 23-49 (213)
442 cd03292 ABC_FtsE_transporter F 79.7 1.4 3E-05 49.1 3.1 27 159-185 25-51 (214)
443 PF09304 Cortex-I_coil: Cortex 79.7 66 0.0014 31.7 14.4 99 898-999 1-99 (107)
444 cd03258 ABC_MetN_methionine_tr 79.6 1 2.2E-05 51.1 1.9 28 159-186 29-56 (233)
445 PRK13341 recombination factor 79.6 2.2 4.7E-05 56.3 5.2 36 150-185 41-76 (725)
446 PRK14531 adenylate kinase; Pro 79.5 1.6 3.5E-05 47.6 3.4 25 162-186 3-27 (183)
447 PF11180 DUF2968: Protein of u 79.5 96 0.0021 33.8 16.3 86 924-1009 99-184 (192)
448 COG1382 GimC Prefoldin, chaper 79.4 53 0.0011 33.2 13.4 36 969-1004 74-109 (119)
449 PRK12608 transcription termina 79.4 1.9 4.1E-05 51.9 4.2 42 146-187 118-159 (380)
450 PRK05201 hslU ATP-dependent pr 79.4 3.8 8.3E-05 50.1 6.7 61 125-185 5-74 (443)
451 PF13479 AAA_24: AAA domain 79.3 1.2 2.7E-05 49.8 2.5 23 159-181 1-23 (213)
452 PF03962 Mnd1: Mnd1 family; I 79.3 21 0.00045 39.2 11.8 75 934-1009 73-151 (188)
453 PRK05428 HPr kinase/phosphoryl 79.3 1.4 3.1E-05 51.6 3.0 24 161-184 146-169 (308)
454 PRK11176 lipid transporter ATP 79.2 1.1 2.5E-05 58.1 2.5 29 159-187 367-395 (582)
455 cd03223 ABCD_peroxisomal_ALDP 79.2 1.6 3.4E-05 46.9 3.1 27 159-185 25-51 (166)
456 KOG0288 WD40 repeat protein Ti 79.2 87 0.0019 37.8 17.2 12 851-862 11-22 (459)
457 PRK06620 hypothetical protein; 79.2 2.5 5.5E-05 47.4 4.9 20 162-181 45-64 (214)
458 PHA02530 pseT polynucleotide k 79.2 1.4 3E-05 52.0 3.0 24 162-185 3-26 (300)
459 TIGR03864 PQQ_ABC_ATP ABC tran 79.0 1.5 3.3E-05 49.8 3.2 27 159-185 25-51 (236)
460 cd03224 ABC_TM1139_LivF_branch 79.0 1.6 3.4E-05 49.1 3.2 26 159-184 24-49 (222)
461 PRK06835 DNA replication prote 78.9 3.5 7.6E-05 49.3 6.2 29 160-188 182-210 (329)
462 TIGR02640 gas_vesic_GvpN gas v 78.9 2.9 6.3E-05 48.5 5.4 42 141-185 4-45 (262)
463 cd03297 ABC_ModC_molybdenum_tr 78.8 1.5 3.3E-05 48.9 3.1 26 159-185 22-47 (214)
464 cd03256 ABC_PhnC_transporter A 78.8 1.5 3.3E-05 49.8 3.1 27 159-185 25-51 (241)
465 TIGR03007 pepcterm_ChnLen poly 78.8 2E+02 0.0043 36.7 27.2 15 790-804 135-149 (498)
466 PRK06921 hypothetical protein; 78.8 2.2 4.7E-05 49.6 4.4 28 160-187 116-143 (266)
467 PF06005 DUF904: Protein of un 78.8 39 0.00084 31.1 11.4 17 940-956 21-37 (72)
468 PF01695 IstB_IS21: IstB-like 78.7 2.9 6.3E-05 45.5 5.1 29 159-187 45-73 (178)
469 PRK11124 artP arginine transpo 78.7 1.6 3.4E-05 49.9 3.2 26 159-184 26-51 (242)
470 TIGR02880 cbbX_cfxQ probable R 78.7 1.6 3.5E-05 51.2 3.3 28 163-190 60-87 (284)
471 KOG1899 LAR transmembrane tyro 78.7 79 0.0017 39.9 17.1 25 1209-1233 551-576 (861)
472 PLN02348 phosphoribulokinase 78.7 2.6 5.5E-05 51.1 5.0 28 159-186 47-74 (395)
473 cd03268 ABC_BcrA_bacitracin_re 78.6 1.6 3.5E-05 48.5 3.2 27 159-185 24-50 (208)
474 TIGR00382 clpX endopeptidase C 78.6 3.6 7.8E-05 50.6 6.3 24 162-185 117-140 (413)
475 TIGR02315 ABC_phnC phosphonate 78.6 1.6 3.4E-05 49.8 3.1 27 159-185 26-52 (243)
476 PRK02496 adk adenylate kinase; 78.6 1.6 3.5E-05 47.5 3.1 22 164-185 4-25 (184)
477 KOG1103 Predicted coiled-coil 78.6 1.4E+02 0.0031 34.9 23.5 35 973-1007 246-280 (561)
478 PRK09087 hypothetical protein; 78.5 2.6 5.6E-05 47.7 4.7 24 160-183 43-66 (226)
479 PF14532 Sigma54_activ_2: Sigm 78.4 0.99 2.2E-05 46.8 1.3 26 159-184 19-44 (138)
480 cd03266 ABC_NatA_sodium_export 78.4 1.6 3.6E-05 48.8 3.2 25 159-183 29-53 (218)
481 TIGR01184 ntrCD nitrate transp 78.4 1.6 3.5E-05 49.4 3.1 27 159-185 9-35 (230)
482 PRK14960 DNA polymerase III su 78.4 2.8 6E-05 54.0 5.4 54 130-187 7-63 (702)
483 PRK06936 type III secretion sy 78.3 2.8 6E-05 51.7 5.2 40 146-185 147-186 (439)
484 PRK13539 cytochrome c biogenes 78.2 1.7 3.7E-05 48.4 3.2 26 159-184 26-51 (207)
485 cd01672 TMPK Thymidine monopho 78.2 1.8 4E-05 47.2 3.4 24 164-187 3-26 (200)
486 cd03230 ABC_DR_subfamily_A Thi 78.2 1.7 3.8E-05 46.8 3.1 26 159-184 24-49 (173)
487 cd03265 ABC_DrrA DrrA is the A 78.1 1.7 3.7E-05 48.8 3.2 25 159-183 24-48 (220)
488 KOG0243 Kinesin-like protein [ 78.1 2.8E+02 0.006 38.0 24.3 34 144-177 112-145 (1041)
489 PRK07994 DNA polymerase III su 78.1 2.9 6.2E-05 54.2 5.5 54 130-185 8-62 (647)
490 PRK10908 cell division protein 78.0 1.7 3.7E-05 48.9 3.2 24 159-182 26-49 (222)
491 TIGR01005 eps_transp_fam exopo 78.0 2.6E+02 0.0057 37.7 27.7 200 789-992 167-403 (754)
492 KOG0962 DNA repair protein RAD 78.0 3.1E+02 0.0067 38.5 25.0 173 828-1005 171-344 (1294)
493 TIGR02546 III_secr_ATP type II 78.0 4 8.7E-05 50.5 6.6 132 2-184 23-168 (422)
494 KOG1970 Checkpoint RAD17-RFC c 77.9 2.8 6E-05 52.0 4.9 61 125-185 69-134 (634)
495 PRK07429 phosphoribulokinase; 77.9 1.6 3.4E-05 52.2 3.0 22 164-185 11-32 (327)
496 cd03270 ABC_UvrA_I The excisio 77.8 1.7 3.8E-05 49.1 3.1 24 159-182 19-42 (226)
497 cd03219 ABC_Mj1267_LivG_branch 77.8 1.6 3.5E-05 49.5 2.9 24 159-182 24-47 (236)
498 TIGR00972 3a0107s01c2 phosphat 77.8 1.7 3.7E-05 49.7 3.1 24 159-182 25-48 (247)
499 PRK05563 DNA polymerase III su 77.8 3.1 6.8E-05 53.5 5.8 53 130-185 8-62 (559)
500 cd03269 ABC_putative_ATPase Th 77.8 1.8 3.9E-05 48.2 3.2 24 159-182 24-47 (210)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-219 Score=2031.95 Aligned_cols=1306 Identities=32% Similarity=0.480 Sum_probs=986.7
Q ss_pred CccCCcEEEEecCCCCEEEEEEEE-eecCCEEEEE--eCCCceeeEEeeeeeehhhhcccccccccccCCCCCCCCCcCc
Q 000467 2 NLRKGSKVWVEDKDLAWVAAEVVS-DSVGRHVQVL--TATGKKFGVVFFFFSIILQVLAAPERVFLRATDDDEEHGGVDD 78 (1476)
Q Consensus 2 ~~~~g~~vw~~~~~~~w~~~~v~~-~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 78 (1476)
++.+|..||+||.+.+|++|.|.. +..++.++.. ..+|..+ .++...+-....++ +..+++||
T Consensus 5 ~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~-P~~~~vdD 70 (1463)
T COG5022 5 NAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESV-------------SVKKKVLGNDRIKL-PKFDGVDD 70 (1463)
T ss_pred ccccCceeeeeccccceeeeeechhhhhccccccchhhccCccc-------------ceeehhcccccccC-ccccCchh
Confidence 388999999999999999999952 2334443332 2344322 22222220110111 13689999
Q ss_pred cccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhc
Q 000467 79 MTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISE 158 (1476)
Q Consensus 79 l~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~ 158 (1476)
||.|+|||||+|||||++||.+++||||+|.+|||||||..|| ||++++|+.|.+++..+++|||||||++||+.|...
T Consensus 71 Lt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~ 149 (1463)
T COG5022 71 LTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSE 149 (1463)
T ss_pred hhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEEeCCC
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTN 238 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~f~~~ 238 (1476)
++||||||||||||||||+||+||+|||++++.++...++||++||++||||||||||||+|||||||||||++|.||.+
T Consensus 150 ~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~ 229 (1463)
T COG5022 150 KENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDEN 229 (1463)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCC
Confidence 99999999999999999999999999999988776566789999999999999999999999999999999999999999
Q ss_pred CcccceeeeeecccccccccccCCCCcceeehhcccCh-H-HHhhccCCCCCCcccccCCCccccCCCCcHHHHHHHHHH
Q 000467 239 GRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG-R-DAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMKTKRA 316 (1476)
Q Consensus 239 g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~-~-~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 316 (1476)
|.|+||+|+||||||||||+|+.+|||||||||||+|. + .++.+++..|.+|+||++|+|..++|+||+++|..|+.|
T Consensus 230 g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~A 309 (1463)
T COG5022 230 GEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDA 309 (1463)
T ss_pred CceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 3 345566789999999999999999999999999999999
Q ss_pred HHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecccCceEE
Q 000467 317 MDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTREGSII 396 (1476)
Q Consensus 317 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~~~~~~~ 396 (1476)
|+++||+.++|.+||++||||||||||+|..+.+ +++.+.+.. .++.+|.|||||+..|.+||++|.|.+++|.|.
T Consensus 310 lktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~~---~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~ 385 (1463)
T COG5022 310 LKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNS---VLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIV 385 (1463)
T ss_pred HHHhCCChHHHHHHHHHHHHHHhhcceeeeeccc-chhhcCCch---HHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEE
Confidence 9999999999999999999999999999988654 444554443 699999999999999999999999999999999
Q ss_pred ecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHhhhhhhHHHhhhhHH
Q 000467 397 KALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQHFNEH 476 (1476)
Q Consensus 397 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~ 476 (1476)
+|++..||..+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|
T Consensus 386 ~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h 465 (1463)
T COG5022 386 VPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQH 465 (1463)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred hHHHhHHHHhhcCCCcccccccChHHHHHHhhh-cccccccccccccchhhhhhhccCCCCchhhHHHhhhhhc------
Q 000467 477 VFKMEQEEYRREEINWSYIEFIDNQDVLDLIEK-VTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------ 549 (1476)
Q Consensus 477 ~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~-~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------ 549 (1476)
||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|| |||.+|.|||++|.+||++.+.
T Consensus 466 ~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLD--------EE~~~p~atd~s~~sKL~~~l~~~~~~~ 537 (1463)
T COG5022 466 MFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLD--------EECVMPHATDESFTSKLAQRLNKNSNPK 537 (1463)
T ss_pred HHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhc--------HHhcCCCCCchHHHHHHHHHhccccCcc
Confidence 999999999999999999999999999999997 3799999999 9999999999999999987531
Q ss_pred ----------------------------------------------------------ccccCCCCccccHHHHHHHHHH
Q 000467 550 ----------------------------------------------------------EESSRSSYKFSSVASRFKQQLQ 571 (1476)
Q Consensus 550 ----------------------------------------------------------~~~~~~~~~~~tv~~~f~~~l~ 571 (1476)
++..+. .+++|+|++||.||.
T Consensus 538 f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~K-~~~pT~gs~~K~sl~ 616 (1463)
T COG5022 538 FKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIESK-GRFPTLGSRFKESLN 616 (1463)
T ss_pred ccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcccc-CCCCcHHHHHHHHHH
Confidence 001112 267999999999999
Q ss_pred HHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhccc----
Q 000467 572 ALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDE---- 647 (1476)
Q Consensus 572 ~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~---- 647 (1476)
.||++|++|+||||||||||..|+|+.||+.+|++|||||||||+|||+|+|||+||+|+||+.||++|.|.....
T Consensus 617 ~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~ 696 (1463)
T COG5022 617 SLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYT 696 (1463)
T ss_pred HHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964321
Q ss_pred -ChhHHHHHHHHHHHcCcC--CcccccceeccccccccchhhhhhhhhhhHHHHHHHHHHhhHHHHHHHhhhHHHHHHHH
Q 000467 648 -SYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQA 724 (1476)
Q Consensus 648 -~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~~~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~iQa 724 (1476)
..|.+.+|+.||..+.++ .||+|+||||||+|+++.||.+|...++.+++.||++|||++.|++|....+.+..+|.
T Consensus 697 ~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~ 776 (1463)
T COG5022 697 WKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQV 776 (1463)
T ss_pred chhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 136789999999998776 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhcccccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000467 725 QCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLKLSLAAIVIQ-SNIRGFSIRERFLHRKRHKAATVIQACWRMCK 803 (1476)
Q Consensus 725 ~~Rg~laR~~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~IQ-s~~Rg~~aR~~~~~~r~~~Aa~~IQ~~~R~~~ 803 (1476)
..+|++.|++...--...+++.+|..||....|+.|......++.+| ..+|....+...+.....++++.+|+.||.+.
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~ 856 (1463)
T COG5022 777 IQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLK 856 (1463)
T ss_pred HhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999887766666789999999999999999999999999999 66777777666667777899999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000467 804 FRSAFQHHQTSIIAIQCRWRQKLAKRELRRLKQVANEAGALRLAKNKLERQLEDLTWRVQLEKKLRVSTEEAKSVEISKL 883 (1476)
Q Consensus 804 ~R~~y~~~~~a~i~iQ~~~R~~~arr~~~~lr~~~~~~~~l~~~~~~le~ki~el~~rl~~ek~l~~~~~eak~~E~~~L 883 (1476)
.+++|..+.+.++.+|+.+|...|++++..++.+.+++..+......++.++.++...+....... -+-+...+..|
T Consensus 857 ~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~---~~~k~e~~a~l 933 (1463)
T COG5022 857 AKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIEN---LEFKTELIARL 933 (1463)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhh---hHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888876554311100 00111122222
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 000467 884 QKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKA 963 (1476)
Q Consensus 884 q~~le~l~~el~~~~~~~~~e~~~~~~~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~ 963 (1476)
+.-++....+..... +.. ...++.++..+..+|++...+....+...+....+
T Consensus 934 k~~l~~~d~~~~~~~-----~~~---------------------~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~- 986 (1463)
T COG5022 934 KKLLNNIDLEEGPSI-----EYV---------------------KLPELNKLHEVESKLKETSEEYEDLLKKSTILVRE- 986 (1463)
T ss_pred HHHhhcccccchhHH-----HHH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh-
Confidence 222222100000000 000 00012222222222222222211111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH---HHHHHHhhhccCCCCcCCCCcccccccccCCCCCCCCCC
Q 000467 964 QKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDE---NHVLRQKALSVSPKSNRFGLPKAFSDKYTGSLSLPHVDR 1040 (1476)
Q Consensus 964 ~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E---~~~Lkqk~~~~s~~~~~~~~~~~l~e~l~~~~~~~~~~~ 1040 (1476)
......++....+++.....+...+.+..+.++.. +..+.......+. ....++...+...+..
T Consensus 987 ---~~~~~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s----------~~~~~~~~~~~~~~~~ 1053 (1463)
T COG5022 987 ---GNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISS----------ESTELSILKPLQKLKG 1053 (1463)
T ss_pred ---cccHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhcc----------chhhhhccCcccchhh
Confidence 11111111111111111111111111111111111 2222111100000 0000000000000000
Q ss_pred CC---CCCCCCCCCCccCCccCCchhHhhhhhHHHhhhhHHHHHHHHhh-hcCCCC-CccchHHHH-HHHHhcccc-ccc
Q 000467 1041 KP---IFESPTPSKLITPFSHGLSESRRTKLTAERYQENLEFLSRCIKE-NLGFNN-GKPVAACII-YKSLVHWQA-FES 1113 (1476)
Q Consensus 1041 ~~---~~e~~~~~~~~~~~~~~~~e~e~~~~l~E~q~E~~d~l~~~l~~-~~~~~~-~~p~~A~il-f~cl~~~~~-~~~ 1113 (1476)
.. ..+...+. ..+.++.. ....-....++.+....+++.+.. ++...+ .-+.||..+ +....+|+. ...
T Consensus 1054 ~~~~~~~~l~~~~-~~l~~~r~---~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~ 1129 (1463)
T COG5022 1054 LLLLENNQLQARY-KALKLRRE---NSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQ 1129 (1463)
T ss_pred hhhHHHHHhhhhH-hhhhhcCc---ccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHH
Confidence 00 00000000 00000000 000001112334444555554432 223321 112244443 333345654 222
Q ss_pred chhhHHHHHHHHHHHhhccC---CCCCcccchhhhHHHHHH---HHHhhhcccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 000467 1114 ERTAIFDYIIEGINDVLKVG---DENSILPYWLSNASALLC---LLQRSLRSNGLLTANTPRTTGSTGLPGRIAYGIKSP 1187 (1476)
Q Consensus 1114 ~~~~ll~~ii~~i~~~i~~~---~d~~~layWLSN~~~Ll~---~Lqq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1187 (1476)
+...++...+..++.+...- +-.....||.+|...+++ +.-.. +. ... ..++ ..+++.
T Consensus 1130 ~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~--------~~~--~~~~-----~d~~~~ 1193 (1463)
T COG5022 1130 EISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS-EK--------RLY--QSAL-----YDEKSK 1193 (1463)
T ss_pred hhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCchhhcc-hh--------hhh--Hhhh-----hccccc
Confidence 33445555566666554433 223447899999998763 11100 00 000 0000 001110
Q ss_pred cccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccccccCCCcCCCCCCCCCccccc
Q 000467 1188 FKYIGFGDGIPHVEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLGSCIQVPKTARVHAGKLSRSPGVQQQSHTSQ 1267 (1476)
Q Consensus 1188 ~~~~~~~~e~~~v~~~~p~~~~~qqL~~~v~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~g~~~r~~~~~~~~~~~~ 1267 (1476)
++.+ -.-..+..+..+..++|..|.... .+.+++...+.....+...+|+.. +...+..+...+
T Consensus 1194 ----~s~s---------~v~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1257 (1463)
T COG5022 1194 ----LSSS---------EVNDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFNN-LNKKFDTPASMS 1257 (1463)
T ss_pred ----ccHH---------HHHHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhccccccccc-hhhcccCcccCc
Confidence 0001 122466788888888888887665 344444322222222222223321 111222345567
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCCCCccchhHHhhchHHHHHHHhhcCcccccc
Q 000467 1268 WDNIIKFLDSLMRRLRENHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVSAKEEFAGT 1347 (1476)
Q Consensus 1268 ~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~QlF~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~l~~~~~ 1347 (1476)
...++.+++++...++.+.+.+.+....++++.-++|+.+||.|..|..-..|..|.++.+|.+.+.+||+.+|. ..
T Consensus 1258 ~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~i---~~ 1334 (1463)
T COG5022 1258 NEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEI---SD 1334 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhcc---cc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999986 56
Q ss_pred cHHhhHHHHHHHHHHhccccCccCHHHHHHccCCCCCHHHHHHHHhcCccCCCCcccCCHHHHHHHHHHhhh
Q 000467 1348 SWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLCPALTVRQIYRICTMYWDDKYGTQSVSNEVVAQMREILNK 1419 (1476)
Q Consensus 1348 ~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~L~~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~~ 1419 (1476)
+..+|+++.||+..+++.++...+++++ .+.|.+|+|.|+.+|+.+|.|.+++ .++|.++..+|......
T Consensus 1335 ~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~~ 1404 (1463)
T COG5022 1335 VDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLIK 1404 (1463)
T ss_pred hHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhhH
Confidence 6689999999999999998888888888 5999999999999999999999997 69999999777555543
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.5e-184 Score=1739.08 Aligned_cols=705 Identities=33% Similarity=0.541 Sum_probs=645.3
Q ss_pred CccCCcEEEE-------ecCCCCEEEEEEEEeecCCEEEEEe---CCCceeeEEeeeeeehhhhcccccccccccCCCCC
Q 000467 2 NLRKGSKVWV-------EDKDLAWVAAEVVSDSVGRHVQVLT---ATGKKFGVVFFFFSIILQVLAAPERVFLRATDDDE 71 (1476)
Q Consensus 2 ~~~~g~~vw~-------~~~~~~w~~~~v~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (1476)
++.+|+.||+ +||+++|+.|+|+.+.+|+.++|.. ++|+++ +++.+++ ++ .||+.
T Consensus 29 ~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~-~~-~n~~~ 93 (821)
T PTZ00014 29 NVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTF-------------EVKPEHA-FN-ANSQI 93 (821)
T ss_pred ccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEE-------------EeeHHHh-hh-cCCCC
Confidence 3568999998 6789999999994377888888874 457776 6777788 77 56665
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCC-CCCCCChhHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGA-PFGELSPHVFAVADA 150 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~-~~~~~~PHifavA~~ 150 (1476)
++.+++||+.|+|||||+|||||+.||.++.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.
T Consensus 94 ~~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~ 172 (821)
T PTZ00014 94 DPMTYGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARR 172 (821)
T ss_pred CcCCcchhhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHH
Confidence 67889999999999999999999999999999999999999999999997 9999999999985 578999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccE
Q 000467 151 SYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKF 230 (1476)
Q Consensus 151 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~ 230 (1476)
||+.|...++||||||||||||||||+||++|+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||
T Consensus 173 Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKf 250 (821)
T PTZ00014 173 ALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRF 250 (821)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeE
Confidence 999999999999999999999999999999999999986532 235799999999999999999999999999999999
Q ss_pred EEEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHH
Q 000467 231 VEIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAE 308 (1476)
Q Consensus 231 ~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~ 308 (1476)
++|+||.+|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++.+|+||++ +|..++++||++
T Consensus 251 i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~ 329 (821)
T PTZ00014 251 MQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVK 329 (821)
T ss_pred EEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHH
Confidence 9999999999999999999999999999999999999999999998 7788999999999999995 588999999999
Q ss_pred HHHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCC---CCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhh
Q 000467 309 EYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE---HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCT 385 (1476)
Q Consensus 309 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~ 385 (1476)
+|.+|+.||++|||+++++.+||+|||||||||||+|.+... .+++.+.+. +..++..||+|||||+++|.++||+
T Consensus 330 ~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~ 408 (821)
T PTZ00014 330 DFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTV 408 (821)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhc
Confidence 999999999999999999999999999999999999986432 244555443 3347999999999999999999999
Q ss_pred ceecccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHhhhh
Q 000467 386 RTIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFA 465 (1476)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINya 465 (1476)
|++.++++.+++++++++|..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||
T Consensus 409 ~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~ 488 (821)
T PTZ00014 409 KVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINIT 488 (821)
T ss_pred eEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776677899999999999999999999999999
Q ss_pred hhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhh
Q 000467 466 NEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLF 545 (1476)
Q Consensus 466 NEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~ 545 (1476)
||||||+||+|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|| |||++|++||++|++||+
T Consensus 489 NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLD--------Eec~~p~~tD~~f~~kl~ 560 (821)
T PTZ00014 489 NEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILE--------DQCLAPGGTDEKFVSSCN 560 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHH--------HHhCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred hhhc------------------------------------------------------------cc--ccC-CCCccccH
Q 000467 546 PVLS------------------------------------------------------------EE--SSR-SSYKFSSV 562 (1476)
Q Consensus 546 ~~~~------------------------------------------------------------~~--~~~-~~~~~~tv 562 (1476)
+++. .+ ... +..+.+||
T Consensus 561 ~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv 640 (821)
T PTZ00014 561 TNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLI 640 (821)
T ss_pred HHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcH
Confidence 6532 00 000 11145799
Q ss_pred HHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhh
Q 000467 563 ASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLAL 642 (1476)
Q Consensus 563 ~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~ 642 (1476)
+++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|.+
T Consensus 641 ~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~ 720 (821)
T PTZ00014 641 GSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDL 720 (821)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhccc-ChhHHHHHHHHHHHcCc--CCcccccceeccccccccchhhhhhhhhh---hHHHHHHHHHHhhHHHHHHHhhh
Q 000467 643 EFMDE-SYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRRAEVLD---SAARCIQHRWRTFIAHRNFVSIR 716 (1476)
Q Consensus 643 ~~~~~-~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~~~---~aa~~IQ~~~R~~l~Rk~~~~~r 716 (1476)
..... ..|+++.|+.||+.+++ ++|++|+||||||+|+++.||..|.+++. .++..||++||+|++|++|.+++
T Consensus 721 ~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~ 800 (821)
T PTZ00014 721 AVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNI 800 (821)
T ss_pred ccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65432 35889999999999876 48999999999999999999998877764 68889999999999999999999
Q ss_pred HHHHHHHHHHhhcccchh
Q 000467 717 AAAFVLQAQCRGCLARKL 734 (1476)
Q Consensus 717 ~a~i~iQa~~Rg~laR~~ 734 (1476)
.+++.||+.||||++++.
T Consensus 801 ~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 801 KSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999887754
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.5e-167 Score=1637.91 Aligned_cols=696 Identities=41% Similarity=0.708 Sum_probs=630.6
Q ss_pred ccCCcEEEEecCCCCEEEEEEEEeecCCEEEEEeCCCceeeEEeeeeeehhhhcccccccccccCCCCCCCCCcCccccC
Q 000467 3 LRKGSKVWVEDKDLAWVAAEVVSDSVGRHVQVLTATGKKFGVVFFFFSIILQVLAAPERVFLRATDDDEEHGGVDDMTKL 82 (1476)
Q Consensus 3 ~~~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L 82 (1476)
|..-.+|||||++++|+.|.| .+..|+.|+|.+.+|.+. +.++.+++ +| .||+ ..+.++||+.|
T Consensus 27 ~d~kk~vWvpd~~e~fv~~~i-~~~~~~~v~v~~~~~~~~------------~~v~~~~v-~~-~NPP-kfdk~eDMa~L 90 (1930)
T KOG0161|consen 27 FDSKKWVWVPDPKEGFVKAEI-KSEEGEKVTVETEEGGTL------------TQVKEDDV-QK-MNPP-KFDKVEDMAEL 90 (1930)
T ss_pred hhhcceeeecCCCCCeeeeee-eccCCCceEEEEcCCcee------------EEecHHHc-Cc-CCCC-CccccccHHHh
Confidence 344579999999999999999 666666699999888777 13777788 77 4553 35789999999
Q ss_pred CCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCe
Q 000467 83 TYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEHQSQ 162 (1476)
Q Consensus 83 ~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~Q 162 (1476)
++||||+|||||+.||.++.||||+|..||+||||+++| ||+++++++|+|+...+|||||||||+.||+.|+.++.||
T Consensus 91 T~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQ 169 (1930)
T KOG0161|consen 91 TFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQ 169 (1930)
T ss_pred cccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhcCCCCC---CCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEEeCCCC
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFVGGRAAG---DDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNG 239 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~~~~~~~---~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~f~~~g 239 (1476)
||+|+|||||||||+||.||+|||++++++.. ..++++++|+++||||||||||+|++|+|||||||||+|+||..|
T Consensus 170 SiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G 249 (1930)
T KOG0161|consen 170 SILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATG 249 (1930)
T ss_pred eEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCC
Confidence 99999999999999999999999999875321 125899999999999999999999999999999999999999999
Q ss_pred cccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCC-CCCcccccCCCccccCCCCcHHHHHHHHHH
Q 000467 240 RISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDH-PSHFHYLNQSKVYELDGVSSAEEYMKTKRA 316 (1476)
Q Consensus 240 ~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~-~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 316 (1476)
.|+||.|.+||||||||++|+++|||||||||+++|. ..+..|.|.+ +.+|.|+.++.. .++|+||+++|..|..|
T Consensus 250 ~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a 328 (1930)
T KOG0161|consen 250 KIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEA 328 (1930)
T ss_pred ccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 6777888875 899999998877 89999999999999999
Q ss_pred HHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecccCceEE
Q 000467 317 MDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTREGSII 396 (1476)
Q Consensus 317 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~~~~~~~ 396 (1476)
|+++||+++++.+||+|+||||||||+.|......+.+.+.+.. ....+|.||||+.+.|.+++++..+.++++-+.
T Consensus 329 ~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~---~a~ka~~llg~~~~~~~~al~~priKvg~e~v~ 405 (1930)
T KOG0161|consen 329 MDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTE---VADKACHLLGINVEEFLKALLRPRIKVGREWVS 405 (1930)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCch---HHHHHHHHcCCCHHHHHHHhcccceeccchhhh
Confidence 99999999999999999999999999999876444444444432 689999999999999999999999999999999
Q ss_pred ecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHhhhhhhHHHhhhhHH
Q 000467 397 KALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQHFNEH 476 (1476)
Q Consensus 397 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~ 476 (1476)
+..+.+|+..+-.+|||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|
T Consensus 406 k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~ 485 (1930)
T KOG0161|consen 406 KAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHH 485 (1930)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcch
Confidence 99999999999999999999999999999999999887778899999999999999999999999999999999999999
Q ss_pred hHHHhHHHHhhcCCCcccccc-cChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhhc------
Q 000467 477 VFKMEQEEYRREEINWSYIEF-IDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------ 549 (1476)
Q Consensus 477 ~f~~eq~~y~~Egi~~~~i~f-~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------ 549 (1476)
+|.+||++|.+|||.|.+|+| .|-+|||||||+ |+||+++|| |||.+|++||.+|+.||++.|.
T Consensus 486 mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLd--------EEc~~PkAtd~tf~~kL~~~~~gk~~~f 556 (1930)
T KOG0161|consen 486 MFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLD--------EECVVPKATDKTFLEKLCDQHLGKHPKF 556 (1930)
T ss_pred hhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHH--------HHHhcCCCccchHHHHHHHHhhccCccc
Confidence 999999999999999999999 799999999997 589999999 9999999999999999987631
Q ss_pred --------------------------------------------------------cc---------------ccCCCCc
Q 000467 550 --------------------------------------------------------EE---------------SSRSSYK 558 (1476)
Q Consensus 550 --------------------------------------------------------~~---------------~~~~~~~ 558 (1476)
.+ ..++ ..
T Consensus 557 ~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~-g~ 635 (1930)
T KOG0161|consen 557 QKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKK-GS 635 (1930)
T ss_pred cCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCC-cc
Confidence 00 0111 14
Q ss_pred cccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHh
Q 000467 559 FSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFG 638 (1476)
Q Consensus 559 ~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~ 638 (1476)
|.||+..+|.||+.||.+|++|+|||||||.||+.|.|+.+|.+.|+.||||.||||+|||+|.|||.|++|.+|..||.
T Consensus 636 F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~ 715 (1930)
T KOG0161|consen 636 FRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYE 715 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcc-cChhHHHHHHHHHHHcCcC--CcccccceeccccccccchhhhhhhhhhhHHHHHHHHHHhhHHHHHHHhh
Q 000467 639 LLALEFMD-ESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSI 715 (1476)
Q Consensus 639 ~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~~~~aa~~IQ~~~R~~l~Rk~~~~~ 715 (1476)
++.+.... +..|.+.+|..++..+..+ -|++|.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+.
T Consensus 716 lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr 795 (1930)
T KOG0161|consen 716 LLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKR 795 (1930)
T ss_pred hhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443 3457799999999988654 59999999999999999999999999999888888888888888877654
Q ss_pred h---HHHHHHHHHHhhc
Q 000467 716 R---AAAFVLQAQCRGC 729 (1476)
Q Consensus 716 r---~a~i~iQa~~Rg~ 729 (1476)
. .|+.+||+.+|.|
T Consensus 796 ~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 796 LQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 2 3555555555544
No 4
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.2e-170 Score=1589.98 Aligned_cols=611 Identities=69% Similarity=1.102 Sum_probs=578.6
Q ss_pred CCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHH
Q 000467 74 GGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYR 153 (1476)
Q Consensus 74 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 153 (1476)
+|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+|+||++++|+.|+++..+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEE
Q 000467 154 AMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEI 233 (1476)
Q Consensus 154 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l 233 (1476)
+|.++++||||||||||||||||++|++|+|||.+++.......+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876554556899999999999999999999999999999999999
Q ss_pred EeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh-HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000467 234 QFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG-RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 312 (1476)
Q Consensus 234 ~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~-~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 312 (1476)
+||.+|.|+||+|.+|||||||||+|++||||||||||||+|. +++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 9999999999999999999999999999999999999999997 778899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecccC
Q 000467 313 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 392 (1476)
Q Consensus 313 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~~~ 392 (1476)
++.||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...+..||+||||++++|.++||++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666555455689999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHhhhhhhHHHhh
Q 000467 393 GSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQH 472 (1476)
Q Consensus 393 ~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~ 472 (1476)
+.+++++++++|.++||+|||+||++||+|||.+||.+|+++..+..+||||||||||+|+.|||||||||||||||||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998777789999999999999999999999999999999999
Q ss_pred hhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhhc---
Q 000467 473 FNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS--- 549 (1476)
Q Consensus 473 f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~--- 549 (1476)
|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|| |||++|++||++|++||++.+.
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLd--------ee~~~p~~td~~f~~kl~~~~~~~~ 472 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLD--------EACMFPKSTHETFAQKLYQTFKDHK 472 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHH--------HHHcCCCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999 9999999999999999986532
Q ss_pred --------------------------------------------cc---------------ccCCCCccccHHHHHHHHH
Q 000467 550 --------------------------------------------EE---------------SSRSSYKFSSVASRFKQQL 570 (1476)
Q Consensus 550 --------------------------------------------~~---------------~~~~~~~~~tv~~~f~~~l 570 (1476)
.. .+.+..+++||+++||.||
T Consensus 473 ~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L 552 (674)
T cd01384 473 RFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQL 552 (674)
T ss_pred CCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHH
Confidence 00 0011125679999999999
Q ss_pred HHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhcccChh
Q 000467 571 QALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYE 650 (1476)
Q Consensus 571 ~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~ 650 (1476)
+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......+
T Consensus 553 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~ 632 (674)
T cd01384 553 QSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSD 632 (674)
T ss_pred HHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665568
Q ss_pred HHHHHHHHHHHcCcCCcccccceeccccccccchhhhhhhhh
Q 000467 651 EKALTEKILRKLKLENFQLGRTKVFLRAGQIGILDSRRAEVL 692 (1476)
Q Consensus 651 ~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~~ 692 (1476)
+++.|+.||+.++.++|++|+||||||+|+++.||.+|.+.+
T Consensus 633 ~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 633 DKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999998753
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-169 Score=1558.29 Aligned_cols=688 Identities=56% Similarity=0.875 Sum_probs=653.9
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 151 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~A 151 (1476)
|+.|+|||+.|+|||||+|||||+.||..+.||||+|++|||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEE
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 231 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~ 231 (1476)
|+.|..++.|||||||||||||||+++|++|+||++++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999987 34578999999999999999999999999999999999
Q ss_pred EEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh-HHHhhccCCCCCCcccccCCCccccCCCCcHHHH
Q 000467 232 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG-RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEY 310 (1476)
Q Consensus 232 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~-~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f 310 (1476)
+|+||.+|+|+||+|+||||||||||.++++|||||||||+|+|+ +++++|.|+++..|+|++|++|..++++||+.+|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 999999999999999999999999999999999999999999998 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecc
Q 000467 311 MKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 390 (1476)
Q Consensus 311 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~ 390 (1476)
..|+.||..+||+.++|..||++||||||||||+|..+.+.+.+.+.++ ++..+|+|||++.+.|..+|+.|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998776655555554 799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhccc-CCCCceEeeeecccCcccCCCCchHHHHhhhhhhHH
Q 000467 391 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQ-DMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKL 469 (1476)
Q Consensus 391 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 469 (1476)
++++|+++++..+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||.|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999987 445588999999999999999999999999999999
Q ss_pred HhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhhc
Q 000467 470 QQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS 549 (1476)
Q Consensus 470 q~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~ 549 (1476)
||+||+|||+.||++|.+|||+|+.|+|.||++|+++||+ |.|+++||| |+|++|.++|++|..||++.+.
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Lld--------e~c~lp~~t~~~~a~KL~~~~~ 469 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLD--------EECMLPKGTDETLAQKLYQTLK 469 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccc--------hhccCCCCCcchHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998 799999999 9999999999999999998632
Q ss_pred ---------------------------------------------------------------ccccCCCCccccHHHHH
Q 000467 550 ---------------------------------------------------------------EESSRSSYKFSSVASRF 566 (1476)
Q Consensus 550 ---------------------------------------------------------------~~~~~~~~~~~tv~~~f 566 (1476)
.++++.+ +++||+++|
T Consensus 470 ~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~-~~~tv~s~f 548 (862)
T KOG0160|consen 470 RNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS-KRSTVGSQF 548 (862)
T ss_pred cCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh-hcccHHHHH
Confidence 0001112 567999999
Q ss_pred HHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhcc
Q 000467 567 KQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMD 646 (1476)
Q Consensus 567 ~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~ 646 (1476)
+.+|..||++|++|+||||||||||+.+.|+.||+.+|++|||||||||+|||+++|||.|++|.||+.||++|+| ...
T Consensus 549 k~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~ 627 (862)
T KOG0160|consen 549 KLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS 627 (862)
T ss_pred HHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 332
Q ss_pred cChhHHHHHHHHHHHcCcCCcccccceeccccccccchhhhhhhhhhhHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHH
Q 000467 647 ESYEEKALTEKILRKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQC 726 (1476)
Q Consensus 647 ~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~~~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~iQa~~ 726 (1476)
..|++..|+.||+.++++.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..+|++++.||+.+
T Consensus 628 -~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~ 706 (862)
T KOG0160|consen 628 -ASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYS 706 (862)
T ss_pred -cccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhcccccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000467 727 RGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRE 781 (1476)
Q Consensus 727 Rg~laR~~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~IQs~~Rg~~aR~ 781 (1476)
||+++|+ ..+ +..||+.||+.+|+|..|++|..++.+++.+|+.+||+.+|.
T Consensus 707 rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 707 RGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998 444 678999999999999999999999999999999999999887
No 6
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.6e-166 Score=1568.39 Aligned_cols=604 Identities=44% Similarity=0.751 Sum_probs=563.1
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 151 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~A 151 (1476)
+.+++|||+.|++|||++|||+|+.||.++.||||+|+||||||||+++| +|++++|+.|+++..+++||||||||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCC------CCCCcHHHHHHhhchHHHhhccccccCCCCCC
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAA------GDDRNVEQQVLESNPLLEAFGNARTVRNDNSS 225 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~------~~~~~ve~~il~snpiLEaFGnAkT~rN~NSS 225 (1476)
|++|..+++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred ccccEEEEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCC-CCcccccCCCccccC
Q 000467 226 RFGKFVEIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHP-SHFHYLNQSKVYELD 302 (1476)
Q Consensus 226 Rfgk~~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~-~~~~yl~~~~~~~~~ 302 (1476)
|||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ +++++|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 999999999999999999999999999999999999999999999999997 77889999876 99999999876 478
Q ss_pred CCCcHHHHHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHH
Q 000467 303 GVSSAEEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLAT 382 (1476)
Q Consensus 303 ~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~ 382 (1476)
++||+++|.+++.||+.|||+++++.+||+|||||||||||+|.+....+.+.+.+. .++..||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999987544444445443 37999999999999999999
Q ss_pred HhhceecccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHh
Q 000467 383 LCTRTIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCI 462 (1476)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcI 462 (1476)
||++++.++++.+.+|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877778999999999999999999999999
Q ss_pred hhhhhHHHhhhhHHhHHHhHHHHhhcCCCcccccc-cChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhH
Q 000467 463 NFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEF-IDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFV 541 (1476)
Q Consensus 463 NyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f-~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~ 541 (1476)
||||||||++|++|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|| |||++|++||++|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLd--------ee~~~~~~tD~~~~ 469 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLD--------EECVFPKATDKTFV 469 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhh--------HHhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999 5999999999999999999999 99999999999999
Q ss_pred HHhhhhhc--------------------------------------------------------------cc-c------
Q 000467 542 AGLFPVLS--------------------------------------------------------------EE-S------ 552 (1476)
Q Consensus 542 ~kl~~~~~--------------------------------------------------------------~~-~------ 552 (1476)
+|+++.|. .. .
T Consensus 470 ~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 549 (693)
T cd01377 470 EKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGG 549 (693)
T ss_pred HHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccc
Confidence 99976421 00 0
Q ss_pred -----cCCCCccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcc
Q 000467 553 -----SRSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTR 627 (1476)
Q Consensus 553 -----~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r 627 (1476)
.+...++.||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||||+|||+++|||+|
T Consensus 550 ~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R 629 (693)
T cd01377 550 GGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNR 629 (693)
T ss_pred cccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 000113479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhhhhhcc-cChhHHHHHHHHHHHcCcC--Ccccccceeccccccccchhhhh
Q 000467 628 RTYSDFVDRFGLLALEFMD-ESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 628 ~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
++|.+|++||++|++.... ...|.++.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 630 ~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 630 ILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999999999999987642 3357899999999998774 79999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.5e-166 Score=1561.04 Aligned_cols=598 Identities=44% Similarity=0.744 Sum_probs=560.5
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000467 75 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 154 (1476)
Q Consensus 75 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 154 (1476)
|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEE
Q 000467 155 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 234 (1476)
Q Consensus 155 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~ 234 (1476)
|.++++||||||||||||||||++|++|+|||.+++.. ..|+++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997643 46999999999999999999999999999999999999
Q ss_pred eCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000467 235 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 312 (1476)
Q Consensus 235 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 312 (1476)
||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ +++++|+|+++.+|+||++++|..++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999997 778999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCC--CCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecc
Q 000467 313 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE--HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 390 (1476)
Q Consensus 313 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~ 390 (1476)
++.||+.|||+++++.+||+|||||||||||+|.+.+. .+.+.+.+. .+++.||+||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999986532 234445443 4799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccC-CCCceEeeeecccCcccCCCCchHHHHhhhhhhHH
Q 000467 391 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD-MNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKL 469 (1476)
Q Consensus 391 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 469 (1476)
+++++.+|+++++|.++||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754 45678999999999999999999999999999999
Q ss_pred HhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhhc
Q 000467 470 QQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS 549 (1476)
Q Consensus 470 q~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~ 549 (1476)
|++|++|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|| |||++|+|||++|++|+++.+.
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLD--------ee~~~p~~td~~f~~kl~~~~~ 464 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLID--------EESKFPKGTDQTMLEKLHSQHG 464 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceech--------HhhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999976421
Q ss_pred -------------------------------------------------------------cc--cc-CCCCccccHHHH
Q 000467 550 -------------------------------------------------------------EE--SS-RSSYKFSSVASR 565 (1476)
Q Consensus 550 -------------------------------------------------------------~~--~~-~~~~~~~tv~~~ 565 (1476)
.. .. ....+.+||+++
T Consensus 465 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~ 544 (671)
T cd01381 465 LHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQ 544 (671)
T ss_pred CCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHH
Confidence 00 00 112245799999
Q ss_pred HHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhc
Q 000467 566 FKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFM 645 (1476)
Q Consensus 566 f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 645 (1476)
|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 545 fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~ 624 (671)
T cd01381 545 FRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVK 624 (671)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cc--ChhHHHHHHHHHHHcCc--CCcccccceeccccccccchhhhh
Q 000467 646 DE--SYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 646 ~~--~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
.. ..+.+..|+.|++.+.+ ++|++|+||||||+++++.||..|
T Consensus 625 ~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 625 PAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 32 24678899999998765 589999999999999999999875
No 8
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.9e-166 Score=1435.03 Aligned_cols=666 Identities=39% Similarity=0.651 Sum_probs=614.1
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 151 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~A 151 (1476)
...|++|++-|+.++|++++.||+.||.++.||||+|+|||+||||+.++ ||+++.|++|+|..+.+.|||+||||+.|
T Consensus 6 ~~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~a 84 (1001)
T KOG0164|consen 6 DEVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAA 84 (1001)
T ss_pred cccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHH
Confidence 45899999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCC-CCcHHHHHHhhchHHHhhccccccCCCCCCccccE
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGD-DRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKF 230 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~-~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~ 230 (1476)
|+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+..+ -..|.+.+|.|||||||||||||.|||||||||||
T Consensus 85 Yrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKY 164 (1001)
T KOG0164|consen 85 YRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKY 164 (1001)
T ss_pred HHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcc
Confidence 99999999999999999999999999999999999998755432 24677899999999999999999999999999999
Q ss_pred EEEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCC-CCCCcccccCCCccccCCCCcH
Q 000467 231 VEIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLD-HPSHFHYLNQSKVYELDGVSSA 307 (1476)
Q Consensus 231 ~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~-~~~~~~yl~~~~~~~~~~~~d~ 307 (1476)
|.|.||-+|..+|++|.+|||||||||.|.+|||||||||||+.|+ .....|+|. ++..|+||++| |..+.+++|+
T Consensus 165 MDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~ 243 (1001)
T KOG0164|consen 165 MDINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDA 243 (1001)
T ss_pred eeeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccH
Confidence 9999999999999999999999999999999999999999999998 567889996 89999999998 8889999999
Q ss_pred HHHHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhce
Q 000467 308 EEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRT 387 (1476)
Q Consensus 308 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~ 387 (1476)
.+|..++.||.++||+++|+..+|+|+|||||||||+|.++. |++.+.+. ..+..+|+||++.+++|+++||+|+
T Consensus 244 ~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rt 318 (1001)
T KOG0164|consen 244 SDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRT 318 (1001)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754 45555444 3799999999999999999999999
Q ss_pred ecccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccC-----CCCceEeeeecccCcccCCCCchHHHHh
Q 000467 388 IQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD-----MNSQMQIGVLDIYGFESFKHNSFEQFCI 462 (1476)
Q Consensus 388 ~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfEQlcI 462 (1476)
+.+++|.+.+++++.||..+||||||++|+|||+|||.+||.++... ...+..||||||||||+|+.||||||||
T Consensus 319 vaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcI 398 (1001)
T KOG0164|consen 319 VAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCI 398 (1001)
T ss_pred HHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999642 1235899999999999999999999999
Q ss_pred hhhhhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCC-CCchhhH
Q 000467 463 NFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLS-SSKCPFV 541 (1476)
Q Consensus 463 NyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~-~~~~~f~ 541 (1476)
|||||||||.|++-+++.|||||.+|||+|..|+|.+|.-++||+|.+..||+++|| |+|.-|+ .||.+|+
T Consensus 399 NYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailD--------e~Cl~~G~vtD~tfL 470 (1001)
T KOG0164|consen 399 NYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILD--------EACLRPGTVTDETFL 470 (1001)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhh--------HHhcCCCccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999886 5999999
Q ss_pred HHhhhhhc------------------------------------------------------------------cccc--
Q 000467 542 AGLFPVLS------------------------------------------------------------------EESS-- 553 (1476)
Q Consensus 542 ~kl~~~~~------------------------------------------------------------------~~~~-- 553 (1476)
++|.+.+. .+..
T Consensus 471 ~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~ 550 (1001)
T KOG0164|consen 471 EKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPD 550 (1001)
T ss_pred HHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChh
Confidence 99865421 0000
Q ss_pred --CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchH
Q 000467 554 --RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYS 631 (1476)
Q Consensus 554 --~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~ 631 (1476)
....+.+|+|++||.|+..||+.|.+-+|+||||||||+.|.|+.||...|.+|.||.|+||.+|++|+||.+|.+|+
T Consensus 551 ~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~ 630 (1001)
T KOG0164|consen 551 IAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYE 630 (1001)
T ss_pred HHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchH
Confidence 001145799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccC--hhHHHHHHHHHHHcCc-CCcccccceeccccc-cccchhhhhhhhhhhHHHHHHHHHHhhH
Q 000467 632 DFVDRFGLLALEFMDES--YEEKALTEKILRKLKL-ENFQLGRTKVFLRAG-QIGILDSRRAEVLDSAARCIQHRWRTFI 707 (1476)
Q Consensus 632 ~F~~ry~~l~~~~~~~~--~~~~~~~~~il~~~~~-~~~~iGkTkVFlr~~-~~~~Le~~r~~~~~~aa~~IQ~~~R~~l 707 (1476)
.|+.||+++++..++.. .++++.|..+++..+. .++.+|+||||+|.+ .+..||..|.+++-..++.||+.||||+
T Consensus 631 ~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~ 710 (1001)
T KOG0164|consen 631 RFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWL 710 (1001)
T ss_pred HHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876532 3578999999999987 489999999999987 5789999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhcccchhcccccchhhHHHHHHHHHHHHHHHHHHh
Q 000467 708 AHRNFVSIRAAAFVLQAQCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLK 762 (1476)
Q Consensus 708 ~Rk~~~~~r~a~i~iQa~~Rg~laR~~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~ 762 (1476)
+|.+|++++++++.|+ |||.+. ..+++..||+.+|+|..++.|.+
T Consensus 711 ~R~ry~rmka~~~ii~-wyR~~K---------~ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 711 ARQRYRRMKASATIIR-WYRRYK---------LKSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHhhhhccccCC
Confidence 9999999999999998 787432 23577889999999999998854
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.3e-163 Score=1406.02 Aligned_cols=717 Identities=38% Similarity=0.628 Sum_probs=623.3
Q ss_pred cCCcEEEEecCCCCEEEEEEEEeecCCEEEEEeC--CCceeeEEeeeeeehhhhcccccccccccCCCCCCCCCcCcccc
Q 000467 4 RKGSKVWVEDKDLAWVAAEVVSDSVGRHVQVLTA--TGKKFGVVFFFFSIILQVLAAPERVFLRATDDDEEHGGVDDMTK 81 (1476)
Q Consensus 4 ~~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 81 (1476)
.-|-.||++|+.++|+.|.| .++..+.++++.. .|.++ +..-+++ ++ ... .++.++||-|.
T Consensus 2 e~gr~VWi~d~tdGf~~~rI-~di~~~~ftl~~~d~k~~t~-------------~~~~edv-~a-~ee-D~~k~veDNC~ 64 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRI-TDIGAKGFTLTPLDRKGPTV-------------TRHFEDV-HA-CEE-DSPKDVEDNCE 64 (1259)
T ss_pred CCCceEeecccccchhheee-eeecCCceEEeecccCCcce-------------eehhhhc-cc-ccc-ccccccccccc
Confidence 35889999999999999999 7887777777643 45666 4455566 65 322 25678999999
Q ss_pred CCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCC
Q 000467 82 LTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEHQS 161 (1476)
Q Consensus 82 L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~ 161 (1476)
|-||||+++|+|++.||.+|.||||+.+||||||||..++++|+++.+..|+|+.+|.+||||||||+.|||.|...+.+
T Consensus 65 Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~S 144 (1259)
T KOG0163|consen 65 LMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLS 144 (1259)
T ss_pred eeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEEeCCCCcc
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRI 241 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~f~~~g~i 241 (1476)
|||||||||||||||++|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.+
T Consensus 145 QSIIVSGESGAGKTEstK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~V 220 (1259)
T KOG0163|consen 145 QSIIVSGESGAGKTESTKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQV 220 (1259)
T ss_pred ccEEEecCCCCCcchhHHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCce
Confidence 999999999999999999999999986544 3579999999999999999999999999999999999999999999
Q ss_pred cceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCc---------------------
Q 000467 242 SGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKV--------------------- 298 (1476)
Q Consensus 242 ~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~--------------------- 298 (1476)
+|+-+.+|||||||||.|+.+|||||||||||||+ +.+++|.|+.|++|+||+.|-.
T Consensus 221 vGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~ 300 (1259)
T KOG0163|consen 221 VGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNH 300 (1259)
T ss_pred echhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccc
Confidence 99999999999999999999999999999999998 6689999999999999985411
Q ss_pred -----cccCCCCcHHHHHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCC--CcccccCcccHHHHHHHHHH
Q 000467 299 -----YELDGVSSAEEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEH--DSSVIKDQKSSFHLQMAADL 371 (1476)
Q Consensus 299 -----~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~--~~~~~~~~~~~~~l~~~a~L 371 (1476)
..-+-+||-.+|..+..||..+|++++|...||+++|||||||||+|++..+. .++.+.+ .+...|..+|+|
T Consensus 301 ~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~L 379 (1259)
T KOG0163|consen 301 QQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAEL 379 (1259)
T ss_pred cccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHH
Confidence 11122689999999999999999999999999999999999999999875421 2334443 345689999999
Q ss_pred cCCCHHHHHHHHhhceeccc-----CceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecc
Q 000467 372 FMCDVNLLLATLCTRTIQTR-----EGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDI 446 (1476)
Q Consensus 372 Lgv~~~~l~~~l~~~~~~~~-----~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi 446 (1476)
||+|.++|.-.||.|+|.+. |-.|.+||.+.+|..+||||||++|++||||||.+||.++.-. .+..|||||||
T Consensus 380 LGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDi 458 (1259)
T KOG0163|consen 380 LGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDI 458 (1259)
T ss_pred hCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEee
Confidence 99999999999999999653 3468899999999999999999999999999999999999653 57789999999
Q ss_pred cCcccCCCCchHHHHhhhhhhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhh
Q 000467 447 YGFESFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVV 526 (1476)
Q Consensus 447 ~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~ 526 (1476)
.|||-|.+||||||||||||||||++||+.+++.|||.|.+||+....|+|.|||+||+|||.|..|||+|||
T Consensus 459 AGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLD------- 531 (1259)
T KOG0163|consen 459 AGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLD------- 531 (1259)
T ss_pred ccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCchhhHHHhhhh----hc-----------------------------------------------------
Q 000467 527 VEHCNLLSSSKCPFVAGLFPV----LS----------------------------------------------------- 549 (1476)
Q Consensus 527 ~ee~~~p~~~~~~f~~kl~~~----~~----------------------------------------------------- 549 (1476)
||..+|+.++..|....++. |.
T Consensus 532 -EEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li 610 (1259)
T KOG0163|consen 532 -EEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLI 610 (1259)
T ss_pred -hhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHH
Confidence 99999999999998766543 10
Q ss_pred -------------cccc------CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhc
Q 000467 550 -------------EESS------RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRC 610 (1476)
Q Consensus 550 -------------~~~~------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~ 610 (1476)
.+++ ++..++-|||++||.||..||+.|++|..|||||||||....|..||...++.||.|
T Consensus 611 ~es~~~ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqC 690 (1259)
T KOG0163|consen 611 EESDNPLLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQC 690 (1259)
T ss_pred HhccchHHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhh
Confidence 0001 111255699999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhcccChhHHHHHHHHHHHcCcC--Ccccccceeccccccccchhhhh
Q 000467 611 GGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 611 ~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
+|+.-.+++++.|||+|..|.+.+.-|+-.+|+... ..|++..|+.++..+|++ +|+||.||||||+|.++..++..
T Consensus 691 sGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiM 769 (1259)
T KOG0163|consen 691 SGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIM 769 (1259)
T ss_pred ccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHH
Confidence 999999999999999999999999999988887664 469999999999999986 79999999999999999999876
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHhhcccchhccc-ccchhhHHHHHHHHHHHHHHHHHHh
Q 000467 689 AEVLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQCRGCLARKLYGV-KRETAAAISLQKYVRRWLSRHAFLK 762 (1476)
Q Consensus 689 ~~~~~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~iQa~~Rg~laR~~~~~-~r~~~aai~IQ~~~R~~~~Rk~y~~ 762 (1476)
..--...+..|++ +..|+.|.+|++..-++..+ -+.-.+ .-+..+++++|+.+|||++|+++..
T Consensus 770 ksDPe~m~~lv~k-Vn~WLv~sRWkk~q~~a~sV---------IKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ 834 (1259)
T KOG0163|consen 770 KSDPETMLELVAK-VNKWLVRSRWKKSQYGALSV---------IKLKNKIIYRAECVLKAQRIARGYLARKRHRP 834 (1259)
T ss_pred hcCHHHHHHHHHH-HHHHHHHhHHHHhhhhhhhe---------eehhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 6665555555554 67788888776643332211 111001 1123456666666666666666644
No 10
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.8e-166 Score=1564.58 Aligned_cols=601 Identities=49% Similarity=0.837 Sum_probs=561.0
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000467 75 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 154 (1476)
Q Consensus 75 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 154 (1476)
|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCC--CCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEE
Q 000467 155 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAA--GDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVE 232 (1476)
Q Consensus 155 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~--~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~ 232 (1476)
|.++++||||||||||||||||++|+||+|||.+++... ....+|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 234679999999999999999999999999999999999
Q ss_pred EEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHH
Q 000467 233 IQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEY 310 (1476)
Q Consensus 233 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f 310 (1476)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ +++++|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 99999999999999999999999999999999999999999997 7889999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecc
Q 000467 311 MKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 390 (1476)
Q Consensus 311 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~ 390 (1476)
.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.++....+ ...++.||+||||++++|.++||+|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPK---DENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCC---hHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 999999999999999999999999999999999998754332222222 23799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccC---CCCceEeeeecccCcccCCCCchHHHHhhhhhh
Q 000467 391 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD---MNSQMQIGVLDIYGFESFKHNSFEQFCINFANE 467 (1476)
Q Consensus 391 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 467 (1476)
+++.+++++++++|.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 356789999999999999999999999999999
Q ss_pred HHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhh
Q 000467 468 KLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPV 547 (1476)
Q Consensus 468 kLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~ 547 (1476)
|||++||+|+|+.||++|.+|||+|++|+|.||++|||||++ |.|||++|| |||++|+|||++|++|+++.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLd--------ee~~~p~~td~~f~~kl~~~ 467 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLD--------EECRLPKGSDESWAQKLYNK 467 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhH--------HhhcCCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 599999999 99999999999999998764
Q ss_pred hc--------------------------------------------------------------cc---cc---------
Q 000467 548 LS--------------------------------------------------------------EE---SS--------- 553 (1476)
Q Consensus 548 ~~--------------------------------------------------------------~~---~~--------- 553 (1476)
+. .. ..
T Consensus 468 ~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~ 547 (691)
T cd01380 468 LPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKP 547 (691)
T ss_pred hcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccc
Confidence 21 00 00
Q ss_pred -------CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCc
Q 000467 554 -------RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPT 626 (1476)
Q Consensus 554 -------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~ 626 (1476)
....+.+||+++|+.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+++|||+
T Consensus 548 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 627 (691)
T cd01380 548 AAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPS 627 (691)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCc
Confidence 0012457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhhhhhhcccChhHHHHHHHHHHHcCc--CCcccccceeccccccccchhhhh
Q 000467 627 RRTYSDFVDRFGLLALEFMDESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 627 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
|++|.+|+.||++|+|.......|.++.|+.||+.+.. .+|++|+||||||+++++.||+.|
T Consensus 628 R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 628 RWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred cccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 99999999999999998764446889999999999875 589999999999999999999876
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.7e-165 Score=1549.79 Aligned_cols=597 Identities=48% Similarity=0.808 Sum_probs=556.6
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 151 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~A 151 (1476)
..+|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|+++. .+||||||||+.|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999998 99999999999764 4799999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEE
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 231 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~ 231 (1476)
|+.|..+++||||||||||||||||++|++|+|||.+++. ..++++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 26999999999999999999999999999999999
Q ss_pred EEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000467 232 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 309 (1476)
Q Consensus 232 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 309 (1476)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ +++++|+|.++.+|+||++++|..++++||+.+
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 999999999999999999999999999999999999999999997 778899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceec
Q 000467 310 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQ 389 (1476)
Q Consensus 310 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~ 389 (1476)
|.+|+.||+.|||+++++..||+|||||||||||+|.+.++.+...+.++ .++..||+||||++++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVAD---EALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCCh---HHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 99999999999999999999999999999999999986433332333322 379999999999999999999999999
Q ss_pred ccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCC-CCceEeeeecccCcccCCCCchHHHHhhhhhhH
Q 000467 390 TREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDM-NSQMQIGVLDIYGFESFKHNSFEQFCINFANEK 468 (1476)
Q Consensus 390 ~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEk 468 (1476)
++++.+.+++++++|..+||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998653 346799999999999999999999999999999
Q ss_pred HHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhh
Q 000467 469 LQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVL 548 (1476)
Q Consensus 469 Lq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~ 548 (1476)
||++|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|| |||++|++||++|++|+++++
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLd--------ee~~~p~~tD~~f~~kl~~~~ 466 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLD--------EESTFPNATDLTFANKLKQHL 466 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhH--------HHHcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 999999999999999998652
Q ss_pred c---------------------------------------------------------cc----c---------cCCCCc
Q 000467 549 S---------------------------------------------------------EE----S---------SRSSYK 558 (1476)
Q Consensus 549 ~---------------------------------------------------------~~----~---------~~~~~~ 558 (1476)
+ .. + +....+
T Consensus 467 ~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~~~~~~~~~~~~~~~ 546 (677)
T cd01383 467 KTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSPVVGPLYVASAADSQ 546 (677)
T ss_pred CCCCCCCCCCCCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhcccccccccccccccccc
Confidence 1 00 0 000124
Q ss_pred cccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHh
Q 000467 559 FSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFG 638 (1476)
Q Consensus 559 ~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~ 638 (1476)
..||+++||.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|++||+
T Consensus 547 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~ 626 (677)
T cd01383 547 KLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYG 626 (677)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccChhHHHHHHHHHHHcCcC--Ccccccceeccccccccchhhhh
Q 000467 639 LLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 639 ~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
+|++.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||..|
T Consensus 627 ~L~~~~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 627 FLLLENIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HhCccccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99997654 347889999999998764 89999999999999999999875
No 12
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=5.7e-165 Score=1550.10 Aligned_cols=600 Identities=44% Similarity=0.732 Sum_probs=561.5
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000467 75 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 154 (1476)
Q Consensus 75 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 154 (1476)
|+|||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++| +|++++|+.|+++..+++|||||+||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEE
Q 000467 155 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 234 (1476)
Q Consensus 155 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~ 234 (1476)
|..+++||||||||||||||||++|++|+||+.++++.. ....++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2356999999999999999999999999999999999999
Q ss_pred eCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000467 235 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 312 (1476)
Q Consensus 235 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 312 (1476)
||.+|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999997 788999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecccC
Q 000467 313 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 392 (1476)
Q Consensus 313 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~~~ 392 (1476)
++.||+.|||+++++.+||+|||||||||||+|....+. .+.+.+. .+++.||.||||++++|.++||+|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~-~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDG-AAVISDK---DVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCC-ccccCCh---HHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 999999999999999999999999999999999875432 2334433 479999999999999999999999999998
Q ss_pred ----ceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccC-CCCceEeeeecccCcccCCCCchHHHHhhhhhh
Q 000467 393 ----GSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD-MNSQMQIGVLDIYGFESFKHNSFEQFCINFANE 467 (1476)
Q Consensus 393 ----~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 467 (1476)
+.+++|+++++|.++||+|||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999875 556789999999999999999999999999999
Q ss_pred HHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhh-cccccccccccccchhhhhhhccC-CCCchhhHHHhh
Q 000467 468 KLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEK-VTYQTNTFLDKNRDYVVVEHCNLL-SSSKCPFVAGLF 545 (1476)
Q Consensus 468 kLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~-~p~Gil~lLd~~~~~~~~ee~~~p-~~~~~~f~~kl~ 545 (1476)
|||++||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|| |||++| ++||++|++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLd--------ee~~~p~~~tD~~~~~kl~ 466 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILD--------DVCATPHEGTDQTFLEKLN 466 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHH--------HHHcCCCCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999 999999 999999999998
Q ss_pred hhhc-----------------------------------------------------------c--cccCCCCccccHHH
Q 000467 546 PVLS-----------------------------------------------------------E--ESSRSSYKFSSVAS 564 (1476)
Q Consensus 546 ~~~~-----------------------------------------------------------~--~~~~~~~~~~tv~~ 564 (1476)
+.+. . ....+..+.+||++
T Consensus 467 ~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~tv~~ 546 (674)
T cd01378 467 KKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADSKKRPTTAGF 546 (674)
T ss_pred HHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccccCCCCcHHH
Confidence 7532 0 00011124579999
Q ss_pred HHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhh
Q 000467 565 RFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEF 644 (1476)
Q Consensus 565 ~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 644 (1476)
+||.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..
T Consensus 547 ~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~ 626 (674)
T cd01378 547 KIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKT 626 (674)
T ss_pred HHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc-cChhHHHHHHHHHHHcCc--CCcccccceeccccc-cccchhhhh
Q 000467 645 MD-ESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAG-QIGILDSRR 688 (1476)
Q Consensus 645 ~~-~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r 688 (1476)
.. ...|+++.|+.||..+++ ++|++|+||||||+| +++.||..|
T Consensus 627 ~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 627 WPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred ccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 32 235889999999999876 489999999999998 688999875
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2e-163 Score=1542.42 Aligned_cols=600 Identities=40% Similarity=0.681 Sum_probs=554.9
Q ss_pred CCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHH
Q 000467 73 HGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASY 152 (1476)
Q Consensus 73 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 152 (1476)
+.++|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+|++|++++++.|+++..+++||||||||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEE
Q 000467 153 RAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVE 232 (1476)
Q Consensus 153 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~ 232 (1476)
++|.++++||||||||||||||||++|++|+|||.++++. .+|+++|+++||||||||||||++||||||||||++
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 158 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVE 158 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEE
Confidence 9999999999999999999999999999999999986542 579999999999999999999999999999999999
Q ss_pred EEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCC-------------
Q 000467 233 IQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSK------------- 297 (1476)
Q Consensus 233 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~------------- 297 (1476)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ ++++.|+|.++.+|+||+++.
T Consensus 159 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~ 238 (717)
T cd01382 159 IHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQI 238 (717)
T ss_pred EEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999998 778899999999999999753
Q ss_pred -------------ccccCCCCcHHHHHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCC-CcccccCcccHH
Q 000467 298 -------------VYELDGVSSAEEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEH-DSSVIKDQKSSF 363 (1476)
Q Consensus 298 -------------~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~-~~~~~~~~~~~~ 363 (1476)
|...+++||+.+|.+|+.||+.|||+++++..||+|||||||||||+|.+.+.. +.+.+.+ .+..
T Consensus 239 ~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~ 317 (717)
T cd01382 239 LQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSEQ 317 (717)
T ss_pred cccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCHH
Confidence 234578999999999999999999999999999999999999999999864322 2222322 2345
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhceec-----ccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCc
Q 000467 364 HLQMAADLFMCDVNLLLATLCTRTIQ-----TREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQ 438 (1476)
Q Consensus 364 ~l~~~a~LLgv~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~ 438 (1476)
++..||.||||++++|.++||+|++. ++++.+.+|+++++|..+||+|||+||++||+|||.+||.++..+ .+.
T Consensus 318 ~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~ 396 (717)
T cd01382 318 SLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSS 396 (717)
T ss_pred HHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCC
Confidence 79999999999999999999999987 678999999999999999999999999999999999999999765 356
Q ss_pred eEeeeecccCcccCCCCchHHHHhhhhhhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhccccccccc
Q 000467 439 MQIGVLDIYGFESFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFL 518 (1476)
Q Consensus 439 ~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lL 518 (1476)
.+||||||||||+|+.||||||||||||||||++|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lL 476 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDIL 476 (717)
T ss_pred cEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhccCCCCchhhHHHhhhhhc-------------------------------------------------
Q 000467 519 DKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------------------------------------------------- 549 (1476)
Q Consensus 519 d~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------------------------------------------------- 549 (1476)
| |||++|++||++|++|+++.+.
T Consensus 477 D--------ee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l 548 (717)
T cd01382 477 D--------EENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDAL 548 (717)
T ss_pred H--------HHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccc
Confidence 9 9999999999999999874310
Q ss_pred ---------------------c-cc------cCCCCccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCCh
Q 000467 550 ---------------------E-ES------SRSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFEN 601 (1476)
Q Consensus 550 ---------------------~-~~------~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~ 601 (1476)
. .. .++..++.||+++||.||+.||++|++|+||||||||||+.++|+.||.
T Consensus 549 ~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~ 628 (717)
T cd01382 549 HMSLESLICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEG 628 (717)
T ss_pred cHHHHHHHHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCCh
Confidence 0 00 0011145699999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhcccChhHHHHHHHHHHHcCcC--Ccccccceeccccc
Q 000467 602 PSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAG 679 (1476)
Q Consensus 602 ~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~ 679 (1476)
..|++||||+||||+|||+++|||+|++|.+|++||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|
T Consensus 629 ~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g 707 (717)
T cd01382 629 AQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPG 707 (717)
T ss_pred HHHHHHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEeccc
Confidence 999999999999999999999999999999999999999986553 357899999999998874 89999999999999
Q ss_pred cccchhhh
Q 000467 680 QIGILDSR 687 (1476)
Q Consensus 680 ~~~~Le~~ 687 (1476)
+++.||++
T Consensus 708 ~~~~le~~ 715 (717)
T cd01382 708 KFAEFDQI 715 (717)
T ss_pred HHHHHHHH
Confidence 99999975
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=2e-163 Score=1525.63 Aligned_cols=596 Identities=38% Similarity=0.675 Sum_probs=553.6
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000467 75 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 154 (1476)
Q Consensus 75 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 154 (1476)
++|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|.++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEE
Q 000467 155 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 234 (1476)
Q Consensus 155 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~ 234 (1476)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred eCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HH-HhhccCCCCCCcccccCCCccccCCCC----cH
Q 000467 235 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RD-AEKYKLDHPSHFHYLNQSKVYELDGVS----SA 307 (1476)
Q Consensus 235 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~-~~~~~l~~~~~~~yl~~~~~~~~~~~~----d~ 307 (1476)
|+.+|.|+||+|.+|||||||||+|++||||||||||||+|+ ++ .+.|+|.++..|+||+++++..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 999999999999999999999999999999999999999998 33 368999999999999999887777765 46
Q ss_pred HHHHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCC---CCcccccCcccHHHHHHHHHHcCCCHHHHHHHHh
Q 000467 308 EEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE---HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLC 384 (1476)
Q Consensus 308 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~ 384 (1476)
++|.+|+.||+.|||+++++..||+|||||||||||+|.+... .+.+.+.+ ..++..+|+||||+.++|.++||
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8899999999999999999999999999999999999986432 12233333 34799999999999999999999
Q ss_pred hceecccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCC-----CceEeeeecccCcccCCCCchHH
Q 000467 385 TRTIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMN-----SQMQIGVLDIYGFESFKHNSFEQ 459 (1476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfEQ 459 (1476)
++++.++++++++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986432 35799999999999999999999
Q ss_pred HHhhhhhhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchh
Q 000467 460 FCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCP 539 (1476)
Q Consensus 460 lcINyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~ 539 (1476)
||||||||||||+|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|| |||++|+|||++
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLd--------ee~~~~~~td~~ 465 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLD--------EESRFPQATDQT 465 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHH--------HHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hHHHhhhhhccc------------------------------c------------cCCCCccccHHHHHHHHHHHHHHHH
Q 000467 540 FVAGLFPVLSEE------------------------------S------------SRSSYKFSSVASRFKQQLQALMETL 577 (1476)
Q Consensus 540 f~~kl~~~~~~~------------------------------~------------~~~~~~~~tv~~~f~~~l~~L~~~l 577 (1476)
|++|+++++... . -++| .||+++||.||++||++|
T Consensus 466 ~~~kl~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---~tv~~~fr~~l~~L~~~l 542 (653)
T cd01379 466 LVEKFEDNLKSKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---QTVASYFRYSLMDLLSKM 542 (653)
T ss_pred HHHHHHHhcCCCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC---cHHHHHHHHHHHHHHHHH
Confidence 999998763200 0 0111 689999999999999999
Q ss_pred cccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhcccChhHHHHHHH
Q 000467 578 NSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYEEKALTEK 657 (1476)
Q Consensus 578 ~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ 657 (1476)
++|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......+.++.|+.
T Consensus 543 ~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~~~~~~~~~~~ 622 (653)
T cd01379 543 VVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFEEEPVSSPESCAL 622 (653)
T ss_pred hccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccccccCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997654434577999999
Q ss_pred HHHHcCcCCcccccceeccccccccchhhhh
Q 000467 658 ILRKLKLENFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 658 il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
||..++.++|++||||||||+++++.||++|
T Consensus 623 il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 623 ILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999999999999999999999999865
No 15
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=2e-163 Score=1534.04 Aligned_cols=598 Identities=41% Similarity=0.702 Sum_probs=552.6
Q ss_pred CCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHH
Q 000467 74 GGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYR 153 (1476)
Q Consensus 74 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 153 (1476)
+|+|||+.|++|||++|||+|+.||.+|.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEE
Q 000467 154 AMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEI 233 (1476)
Q Consensus 154 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l 233 (1476)
.|..+++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 34699999999999999999999999999999999999
Q ss_pred EeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHH
Q 000467 234 QFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYM 311 (1476)
Q Consensus 234 ~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~ 311 (1476)
+|+ +|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++.+|+||++++|..+++.+|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 799999999999999999999999999999999999997 77889999999999999999999899999999999
Q ss_pred HHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCC--CCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceec
Q 000467 312 KTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE--HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQ 389 (1476)
Q Consensus 312 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~ 389 (1476)
.|+.||+.|||+++++.+||+|||||||||||+|..... .+.+.+.++ ..+..||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSA---REIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCH---HHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999986432 122333333 379999999999999999999999999
Q ss_pred ccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHhhhhhhHH
Q 000467 390 TREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKL 469 (1476)
Q Consensus 390 ~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 469 (1476)
+++|.+.+|+++++|.++||+|||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4567999999999999999999999999999999
Q ss_pred HhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhhc
Q 000467 470 QQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS 549 (1476)
Q Consensus 470 q~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~ 549 (1476)
|++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||| |||.+|++||++|++|++..+.
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLd--------ee~~~p~~td~~~~~kl~~~~~ 463 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILD--------DQCCFPQATDHTFLQKCHYHHG 463 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHH--------HHhcCCCCchHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999875421
Q ss_pred ------------------------------------------------------------cc----c----cCC-----C
Q 000467 550 ------------------------------------------------------------EE----S----SRS-----S 556 (1476)
Q Consensus 550 ------------------------------------------------------------~~----~----~~~-----~ 556 (1476)
.. . .+. .
T Consensus 464 ~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~ 543 (677)
T cd01387 464 ANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRL 543 (677)
T ss_pred CCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccc
Confidence 00 0 000 1
Q ss_pred CccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHH
Q 000467 557 YKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDR 636 (1476)
Q Consensus 557 ~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~r 636 (1476)
.+.+||+++|+.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.|
T Consensus 544 ~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~r 623 (677)
T cd01387 544 YKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDR 623 (677)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHH
Confidence 13469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcccChhHHHHHHHHHHHcCc--CCcccccceeccccccccchhhhh
Q 000467 637 FGLLALEFMDESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 637 y~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
|++|++.......+.+..+..++..+++ ++|++|+||||||++++..||..|
T Consensus 624 Y~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 624 YRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 9999987543332334455788888765 479999999999999999999875
No 16
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.3e-163 Score=1535.22 Aligned_cols=600 Identities=39% Similarity=0.661 Sum_probs=555.6
Q ss_pred CCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCC-CCCCChhHHHHHHHH
Q 000467 73 HGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAP-FGELSPHVFAVADAS 151 (1476)
Q Consensus 73 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~-~~~~~PHifavA~~A 151 (1476)
..++|||+.|++|||++|||+|+.||.+++||||+|++|||||||+++| +|++++++.|+++. .+++|||||+||+.|
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~A 84 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVA 84 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999998 99999999999887 789999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEE
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 231 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~ 231 (1476)
|++|.++++||||||||||||||||++|++|+||+.+++... ...+|+++|+++||||||||||||++||||||||||+
T Consensus 85 y~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~-~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i 163 (692)
T cd01385 85 YYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGY-AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 163 (692)
T ss_pred HHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc-cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence 999999999999999999999999999999999999975432 3457999999999999999999999999999999999
Q ss_pred EEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000467 232 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 309 (1476)
Q Consensus 232 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 309 (1476)
+|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+|+ ++++++.|.++.+|+||+++++...+++||+.+
T Consensus 164 ~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~ 243 (692)
T cd01385 164 QVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHE 243 (692)
T ss_pred EEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999997 678888898888999999998887789999999
Q ss_pred HHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCC---CCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhc
Q 000467 310 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE---HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTR 386 (1476)
Q Consensus 310 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~ 386 (1476)
|.+|+.||+.|||+++++..||+|||||||||||+|.+..+ .+.+.+.+. ..+..||.||||++++|.++||++
T Consensus 244 f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~ 320 (692)
T cd01385 244 FERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNP---EVVDLLSQLLKVKRETLMEALTKK 320 (692)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCH---HHHHHHHHHhCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999986432 233344433 479999999999999999999999
Q ss_pred eecccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCC---CCceEeeeecccCcccCCC-CchHHHHh
Q 000467 387 TIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDM---NSQMQIGVLDIYGFESFKH-NSFEQFCI 462 (1476)
Q Consensus 387 ~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfEQlcI 462 (1476)
++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. ||||||||
T Consensus 321 ~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcI 400 (692)
T cd01385 321 RTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCI 400 (692)
T ss_pred eEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhh
Confidence 9999999999999999999999999999999999999999999998643 2467999999999999999 99999999
Q ss_pred hhhhhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHH
Q 000467 463 NFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVA 542 (1476)
Q Consensus 463 NyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~ 542 (1476)
||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|| |||++|++||++|++
T Consensus 401 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLd--------ee~~~p~~td~~~l~ 472 (692)
T cd01385 401 NYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLD--------EESNFPHATSQTLLA 472 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhH--------HHhcCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred Hhhhhhc------------------------------------------------------------c-ccc-------C
Q 000467 543 GLFPVLS------------------------------------------------------------E-ESS-------R 554 (1476)
Q Consensus 543 kl~~~~~------------------------------------------------------------~-~~~-------~ 554 (1476)
|+++.+. . ... +
T Consensus 473 kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~ 552 (692)
T cd01385 473 KFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLR 552 (692)
T ss_pred HHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccccccc
Confidence 9987521 0 000 0
Q ss_pred ---CCCccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchH
Q 000467 555 ---SSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYS 631 (1476)
Q Consensus 555 ---~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~ 631 (1476)
.+.+..||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.
T Consensus 553 ~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~ 632 (692)
T cd01385 553 AAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQ 632 (692)
T ss_pred ccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHH
Confidence 01123699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccChhHHHHHHHHHHHcCcC--Ccccccceeccccccccchhhhh
Q 000467 632 DFVDRFGLLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 632 ~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
+|+.||++|+|.... +.++.|+.||+.++++ +|++|+||||||+++++.||...
T Consensus 633 ~F~~rY~~L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 633 DFTQQYRILLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred HHHHHHHHhCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 999999999986432 3466799999998874 89999999999999999998753
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.1e-159 Score=1510.61 Aligned_cols=605 Identities=51% Similarity=0.852 Sum_probs=566.1
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 151 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~A 151 (1476)
...+++||+.|++|||++||++|+.||.++.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++|
T Consensus 4 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~A 82 (677)
T smart00242 4 KFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNA 82 (677)
T ss_pred ccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEE
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 231 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~ 231 (1476)
|+.|..+++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~ 161 (677)
T smart00242 83 YRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFI 161 (677)
T ss_pred HHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeE
Confidence 999999999999999999999999999999999999986532 3457999999999999999999999999999999999
Q ss_pred EEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000467 232 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 309 (1476)
Q Consensus 232 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 309 (1476)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ +++++|+|.++.+|+||++++|..++++||+++
T Consensus 162 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~ 241 (677)
T smart00242 162 EIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEE 241 (677)
T ss_pred EEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999997 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCc-ccccCcccHHHHHHHHHHcCCCHHHHHHHHhhcee
Q 000467 310 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDS-SVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTI 388 (1476)
Q Consensus 310 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~-~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~ 388 (1476)
|.+++.||+.|||+++++.+||+|||||||||||+|.+.++.+. +.+.+ ...++.||.||||++++|.++|+++++
T Consensus 242 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~ 318 (677)
T smart00242 242 FKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKD---KEELENAAELLGVDPEELEKALTKRKI 318 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEE
Confidence 99999999999999999999999999999999999987543222 12333 347999999999999999999999999
Q ss_pred cccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHhhhhhhH
Q 000467 389 QTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEK 468 (1476)
Q Consensus 389 ~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEk 468 (1476)
.++++.+++++++++|.++||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||
T Consensus 319 ~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEk 398 (677)
T smart00242 319 KTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEK 398 (677)
T ss_pred EeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHH
Confidence 99999999999999999999999999999999999999999998876778899999999999999999999999999999
Q ss_pred HHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhh
Q 000467 469 LQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVL 548 (1476)
Q Consensus 469 Lq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~ 548 (1476)
||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|| |||++|++||++|++|+++.+
T Consensus 399 Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLd--------ee~~~~~~td~~~~~kl~~~~ 470 (677)
T smart00242 399 LQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLD--------EECRFPKATDQTFLEKLNQTH 470 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHH--------HHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 999999999999999998753
Q ss_pred c------------------------------------------------ccc---------------cCCCCccccHHHH
Q 000467 549 S------------------------------------------------EES---------------SRSSYKFSSVASR 565 (1476)
Q Consensus 549 ~------------------------------------------------~~~---------------~~~~~~~~tv~~~ 565 (1476)
. ..+ ..+..+..||+++
T Consensus 471 ~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~ 550 (677)
T smart00242 471 EKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQ 550 (677)
T ss_pred cCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHH
Confidence 1 000 0112256799999
Q ss_pred HHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhc
Q 000467 566 FKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFM 645 (1476)
Q Consensus 566 f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 645 (1476)
|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++...
T Consensus 551 fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~ 630 (677)
T smart00242 551 FKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTW 630 (677)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred cc-ChhHHHHHHHHHHHcCc--CCcccccceeccccccccchhhhhh
Q 000467 646 DE-SYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRRA 689 (1476)
Q Consensus 646 ~~-~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~ 689 (1476)
.. ..|+++.|+.||+.+++ ++|++|+||||||++++..||+.|.
T Consensus 631 ~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 631 PPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 32 24689999999999875 5899999999999999999998874
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.9e-158 Score=1504.68 Aligned_cols=599 Identities=48% Similarity=0.795 Sum_probs=558.5
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000467 75 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 154 (1476)
Q Consensus 75 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 154 (1476)
|++||+.|++|||++||++|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||+.||++
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEE
Q 000467 155 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 234 (1476)
Q Consensus 155 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~ 234 (1476)
|.++++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999997643 356999999999999999999999999999999999999
Q ss_pred eCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000467 235 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 312 (1476)
Q Consensus 235 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 312 (1476)
||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ +++++|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999997 788999999999999999999988899999999999
Q ss_pred HHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCc--ccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecc
Q 000467 313 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDS--SVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 390 (1476)
Q Consensus 313 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~ 390 (1476)
++.||+.|||+++++.+||+|||||||||||+|.+....+. +.+.+ ...++.+|+||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKN---TEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCC---HHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543332 23333 34799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCCCchHHHHhhhhhhHHH
Q 000467 391 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQ 470 (1476)
Q Consensus 391 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq 470 (1476)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|..+.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999886667889999999999999999999999999999999
Q ss_pred hhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhhc-
Q 000467 471 QHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS- 549 (1476)
Q Consensus 471 ~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~- 549 (1476)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.||+++|| |||++|+++|++|++|+++.+.
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLd--------ee~~~~~~~d~~~~~kl~~~~~~ 465 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLD--------EECLFPKGTDETFLEKLNNKLKS 465 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHH--------HHhCCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999985421
Q ss_pred ------------------------------------------------------------ccc-------------cCCC
Q 000467 550 ------------------------------------------------------------EES-------------SRSS 556 (1476)
Q Consensus 550 ------------------------------------------------------------~~~-------------~~~~ 556 (1476)
... ..+.
T Consensus 466 ~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~ 545 (679)
T cd00124 466 NNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKK 545 (679)
T ss_pred CcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccc
Confidence 000 0011
Q ss_pred CccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHH
Q 000467 557 YKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDR 636 (1476)
Q Consensus 557 ~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~r 636 (1476)
.+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.|
T Consensus 546 ~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~r 625 (679)
T cd00124 546 KKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSR 625 (679)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHH
Confidence 24579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcccChhHHHHHHHHHHHcCc--CCcccccceeccccccccchhhhh
Q 000467 637 FGLLALEFMDESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 637 y~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
|++|++............|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 626 Y~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 626 YRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred HHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 9999987654322333349999998876 489999999999999999999765
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.7e-158 Score=1498.17 Aligned_cols=597 Identities=31% Similarity=0.493 Sum_probs=532.1
Q ss_pred cCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHH
Q 000467 76 VDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAM 155 (1476)
Q Consensus 76 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 155 (1476)
+|||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| ||++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEEe
Q 000467 156 ISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQF 235 (1476)
Q Consensus 156 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~f 235 (1476)
..+++||||||||||||||||+||+||+|||.+++..+ ...++ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~-~~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVD-GRVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCC-cccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 99999999999999999999999999999999976432 12234 57999999999999999999999999999999999
Q ss_pred CCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCC-CccccCCCCcHHHHHH
Q 000467 236 DTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQS-KVYELDGVSSAEEYMK 312 (1476)
Q Consensus 236 ~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~-~~~~~~~~~d~~~f~~ 312 (1476)
|.+|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++..+.+.+.+ .+...++++|+++|.+
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 99999999999999999999999999999999999999997 77889999876543333322 2334678899999999
Q ss_pred HHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecccC
Q 000467 313 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 392 (1476)
Q Consensus 313 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~~~ 392 (1476)
|+.||+.|||+++++..||+|||||||||||+|.+.. +.+.+.+. ..++.+|.||||+.++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~~---~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFARP---EWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCCH---HHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 22233332 379999999999999999999988765443
Q ss_pred c-------------eEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCceEeeeecccCcccCCC-----
Q 000467 393 G-------------SIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKH----- 454 (1476)
Q Consensus 393 ~-------------~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 454 (1476)
+ .+..++++.+|.++||||||+||++||+|||.+||.+|..+..+..+||||||||||+|++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 2 3345678899999999999999999999999999999988766678999999999999984
Q ss_pred -CchHHHHhhhhhhHHHhhhhHHhHHHhHHHHhhcCCCcccccc-cChHHHHHHhhhcc--------------ccccccc
Q 000467 455 -NSFEQFCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEF-IDNQDVLDLIEKVT--------------YQTNTFL 518 (1476)
Q Consensus 455 -NsfEQlcINyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f-~dn~~~ldlie~~p--------------~Gil~lL 518 (1476)
|||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999997655 79999999999865 5999999
Q ss_pred ccccchhhhhhhccCCCCchhhHHHhhhhhc-------------------------------------------------
Q 000467 519 DKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------------------------------------------------- 549 (1476)
Q Consensus 519 d~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------------------------------------------------- 549 (1476)
| |||++|++||++|++||++.|.
T Consensus 474 D--------Eec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~ 545 (767)
T cd01386 474 D--------EEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAA 545 (767)
T ss_pred h--------HhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCCh
Confidence 9 9999999999999999975311
Q ss_pred -------------------ccc----c---C---------------C------------CCccccHHHHHHHHHHHHHHH
Q 000467 550 -------------------EES----S---R---------------S------------SYKFSSVASRFKQQLQALMET 576 (1476)
Q Consensus 550 -------------------~~~----~---~---------------~------------~~~~~tv~~~f~~~l~~L~~~ 576 (1476)
... . . . ..+..||+++||.||+.||++
T Consensus 546 ~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~ 625 (767)
T cd01386 546 LNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDT 625 (767)
T ss_pred HHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 000 0 0 0 002247899999999999999
Q ss_pred HcccCCeeEEecCCCCCCC----------------------CCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHH
Q 000467 577 LNSTEPHYIRCVKPNSLNR----------------------PQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFV 634 (1476)
Q Consensus 577 l~~t~~h~irCIkpN~~~~----------------------p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 634 (1476)
|++|+||||||||||+.|+ |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 626 L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~ 705 (767)
T cd01386 626 LRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFV 705 (767)
T ss_pred HhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHH
Confidence 9999999999999999874 789999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcc------cChhHHHHHHHHHHHcCcC--Ccccccceeccccccccchhhhh
Q 000467 635 DRFGLLALEFMD------ESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 688 (1476)
Q Consensus 635 ~ry~~l~~~~~~------~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 688 (1476)
.||++|++.... ...|++++|+.||+.++++ +|+||+||||||+++++.||..|
T Consensus 706 ~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 706 RRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred HHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999886432 1358899999999998764 79999999999999999999876
No 20
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-158 Score=1368.63 Aligned_cols=636 Identities=40% Similarity=0.697 Sum_probs=584.4
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 151 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~A 151 (1476)
...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|+|++.-+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45899999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEE
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 231 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~ 231 (1476)
|++|..+++|||||||||||||||++||+||+|++.+++. +.+...|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~-g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGG-GEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccC-CcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 9999999999999999999999999999999999999843 444567888999999999999999999999999999999
Q ss_pred EEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000467 232 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 309 (1476)
Q Consensus 232 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 309 (1476)
+|+|+..|..+|++|.+|||||||||.|.++||||||||||+.|+ +.+..||+..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 999999999999999999999999999999999999999999999 667889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceec
Q 000467 310 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQ 389 (1476)
Q Consensus 310 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~ 389 (1476)
|.+|..||+++|+.+++|+.||++||||||||||.|.+. +..+.+.+.+ .++-.|.|||||...|.+.||.|.|.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~---~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKS---VLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccch---HHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999872 2334444443 68899999999999999999999997
Q ss_pred cc----CceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCC-CceEeeeecccCcccCCCCchHHHHhhh
Q 000467 390 TR----EGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMN-SQMQIGVLDIYGFESFKHNSFEQFCINF 464 (1476)
Q Consensus 390 ~~----~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfEQlcINy 464 (1476)
+. .+++.+||+++||...||||||+||.+||||||++||.++...+. ...+||||||||||+|++||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 64 478999999999999999999999999999999999999975433 5678999999999999999999999999
Q ss_pred hhhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhh-cccccccccccccchhhhhhhcc----CCCCchh
Q 000467 465 ANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEK-VTYQTNTFLDKNRDYVVVEHCNL----LSSSKCP 539 (1476)
Q Consensus 465 aNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~-~p~Gil~lLd~~~~~~~~ee~~~----p~~~~~~ 539 (1476)
.||||||.|++-+++.|||||.+|||.|++|+|.||.-|+||||. .|.||+++|| +.|.. ..|-|.+
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ld--------D~~At~Ha~~~~aDqa 480 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALD--------DVCATAHADSEGADQA 480 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHH--------HHHHHhccccchhHHH
Confidence 999999999999999999999999999999999999999999996 4899999999 88864 3456888
Q ss_pred hHHHhhhhhc---------------------------------------------------------cc-ccCCCCcccc
Q 000467 540 FVAGLFPVLS---------------------------------------------------------EE-SSRSSYKFSS 561 (1476)
Q Consensus 540 f~~kl~~~~~---------------------------------------------------------~~-~~~~~~~~~t 561 (1476)
|+++|...|. +. ...+..+.+|
T Consensus 481 ~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~dskrRP~T 560 (1106)
T KOG0162|consen 481 LLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADSKRRPPT 560 (1106)
T ss_pred HHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccccCCCCC
Confidence 9888763211 00 0111125689
Q ss_pred HHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhh
Q 000467 562 VASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLA 641 (1476)
Q Consensus 562 v~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~ 641 (1476)
.|++.+.|-++|++||..|+||||||||||+.|.|+.||...|++|+.|.|+-|.|||+|+||.+|..|+.|++||.+|.
T Consensus 561 ag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyails 640 (1106)
T KOG0162|consen 561 AGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILS 640 (1106)
T ss_pred chhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccC-hhHHHHHHHHHHHcCc--CCcccccceeccccc-cccchhhhhhhhhhhHHHHHHHHHHhhHHHHHHHhhhH
Q 000467 642 LEFMDES-YEEKALTEKILRKLKL--ENFQLGRTKVFLRAG-QIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIRA 717 (1476)
Q Consensus 642 ~~~~~~~-~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r~~~~~~aa~~IQ~~~R~~l~Rk~~~~~r~ 717 (1476)
|..+... .|++.+|+.||+...+ ++||+|.||||++.+ .+..||.+|.......|..||++||.|++|++|.++|.
T Consensus 641 p~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~re 720 (1106)
T KOG0162|consen 641 PQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMRE 720 (1106)
T ss_pred cccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875422 4889999999998765 589999999999986 56788999999999999999999999999999999987
Q ss_pred HHHHH
Q 000467 718 AAFVL 722 (1476)
Q Consensus 718 a~i~i 722 (1476)
-+..+
T Consensus 721 e~t~l 725 (1106)
T KOG0162|consen 721 EATKL 725 (1106)
T ss_pred HHHHH
Confidence 55433
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=7.5e-150 Score=1445.65 Aligned_cols=590 Identities=48% Similarity=0.817 Sum_probs=518.3
Q ss_pred cCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHH
Q 000467 76 VDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAM 155 (1476)
Q Consensus 76 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 155 (1476)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| ||++++++.|+++..+++||||||||++||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 6999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCC-CCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEEEEE
Q 000467 156 ISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAA-GDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 234 (1476)
Q Consensus 156 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~-~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~~l~ 234 (1476)
+++++||||||||||||||||++|++|+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23457999999999999999999999999999999999999
Q ss_pred eCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000467 235 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 312 (1476)
Q Consensus 235 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 312 (1476)
||.+|.++||+|.+||||||||+.+++||||||||||||+|+ +++++|+|.++.+|+||+++++..+++.||+.+|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 999999999999999999999999999999999999999998 678999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCCCCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhceecccC
Q 000467 313 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 392 (1476)
Q Consensus 313 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~~~~~~~ 392 (1476)
++.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+.. .++.||.||||++++|.++||++++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSE---ELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSH---HHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHH---HHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999986654555555543 69999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCC-CCceEeeeecccCcccCCCCchHHHHhhhhhhHHHh
Q 000467 393 GSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDM-NSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQ 471 (1476)
Q Consensus 393 ~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~ 471 (1476)
+.+++++++++|.++||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999998765 567899999999999999999999999999999999
Q ss_pred hhhHHhHHHhHHHHhhcCCCcccccc-cChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHhhhhh-c
Q 000467 472 HFNEHVFKMEQEEYRREEINWSYIEF-IDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVL-S 549 (1476)
Q Consensus 472 ~f~~~~f~~eq~~y~~Egi~~~~i~f-~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~-~ 549 (1476)
+|++++|+.||++|.+|||+|..|+| .||++|+|||+++|.|||++|| |||.+|+++|++|++++.+.+ .
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLd--------ee~~~~~~sd~~fl~kl~~~~~~ 468 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLD--------EECLLPRGSDESFLEKLLKRHSG 468 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHH--------HHCTSTTS-HHHHHHHHHHHHTT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhh--------hhhhcccchhhHHHHHHHhhccc
Confidence 99999999999999999999999999 9999999999999999999999 999999999999999886543 0
Q ss_pred ----------------------------------------------------------------cccc------------
Q 000467 550 ----------------------------------------------------------------EESS------------ 553 (1476)
Q Consensus 550 ----------------------------------------------------------------~~~~------------ 553 (1476)
....
T Consensus 469 ~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~ 548 (689)
T PF00063_consen 469 KHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRR 548 (689)
T ss_dssp TSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTT
T ss_pred CCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccc
Confidence 0000
Q ss_pred -----------CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhh
Q 000467 554 -----------RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLA 622 (1476)
Q Consensus 554 -----------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~ 622 (1476)
....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|.+||||+||+|++||++.
T Consensus 549 ~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~ 628 (689)
T PF00063_consen 549 SSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQ 628 (689)
T ss_dssp TTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhc
Confidence 000134799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccchHHHHHHHhhhhhhhccc----ChhHHHHHHHHHHHcCc--CCcccccceeccc
Q 000467 623 GYPTRRTYSDFVDRFGLLALEFMDE----SYEEKALTEKILRKLKL--ENFQLGRTKVFLR 677 (1476)
Q Consensus 623 gyp~r~~~~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr 677 (1476)
|||+|++|.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 629 Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 629 GYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp SSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred ccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999976532 35789999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.5e-103 Score=995.83 Aligned_cols=689 Identities=34% Similarity=0.542 Sum_probs=602.7
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000467 72 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 151 (1476)
Q Consensus 72 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~A 151 (1476)
...+++||+.|..++|+.+++||..||..+.||||.|.+|++||||+.+|.||.++.+..|.++.++++|||||++|+.|
T Consensus 59 ~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~ 138 (1062)
T KOG4229|consen 59 QVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLA 138 (1062)
T ss_pred ccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhccccccCCCCCCccccEE
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 231 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGnAkT~rN~NSSRfgk~~ 231 (1476)
|+.|++...||||+||||||||||++|+++++||+.++. +....++++|+.+||+|||||||+|.+|||||||||||
T Consensus 139 y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 139 YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 999999999999999999999999999999999999984 12357899999999999999999999999999999999
Q ss_pred EEEeCCCCcccceeeeeecccccccccccCCCCcceeehhcccCh--HHHhhccCCCCCCcccccCCCcccc-CCCCcHH
Q 000467 232 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYEL-DGVSSAE 308 (1476)
Q Consensus 232 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~-~~~~d~~ 308 (1476)
++.|...|.|.||.+..||||||||+.|+.+||||||||++++|. +++..+.|+.+++|.||+++.+..+ ++.++..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 999999999999999999999999999999999999999999998 6778899999999999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCCHHhHHHHHHHHHHHHHhcCeeEecCC--CCCcccccCcccHHHHHHHHHHcCCCHHHHHHHHhhc
Q 000467 309 EYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGK--EHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTR 386 (1476)
Q Consensus 309 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~~ 386 (1476)
+|..+..||..+||+.+++..||+++|||||+|||+|.... ..|...+.+. .+++.+|.||.++.+.|.++++.+
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~---~~v~~vA~lL~~~~~~l~~alt~~ 372 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENE---EAVERVACLLLIKEKLLQEALTAR 372 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccc---hHHHHHHHHhhcCHHHhhhhhccc
Confidence 99999999999999999999999999999999999997632 2344444443 379999999999999999999999
Q ss_pred eecccCceEEecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccCCC--CceEeeeecccCcccCCCCchHHHHhhh
Q 000467 387 TIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMN--SQMQIGVLDIYGFESFKHNSFEQFCINF 464 (1476)
Q Consensus 387 ~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfEQlcINy 464 (1476)
+.+++++.+..+++.++|.++||++||++|++||.|||.+||..+..+.. ...+||||||||||+|+.|||||+||||
T Consensus 373 ~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~ 452 (1062)
T KOG4229|consen 373 VNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINL 452 (1062)
T ss_pred ceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976554 3689999999999999999999999999
Q ss_pred hhhHHHhhhhHHhHHHhHHHHhhcCCCcccccccChHHHHHHhhhcccccccccccccchhhhhhhccCCCCchhhHHHh
Q 000467 465 ANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGL 544 (1476)
Q Consensus 465 aNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~f~dn~~~ldlie~~p~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl 544 (1476)
|||+||.+||+|||.+||+||..|+|+|..|.|.||++|+|+|..||+||+.+|| |++.+|+++|.++..|+
T Consensus 453 Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liD--------ees~fP~~td~tl~~k~ 524 (1062)
T KOG4229|consen 453 ANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLID--------EESRFPKATDQTLLLKL 524 (1062)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheec--------ccCcCCchHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999887
Q ss_pred hhhhc---------------------------------------------------------------------------
Q 000467 545 FPVLS--------------------------------------------------------------------------- 549 (1476)
Q Consensus 545 ~~~~~--------------------------------------------------------------------------- 549 (1476)
..++.
T Consensus 525 ~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra 604 (1062)
T KOG4229|consen 525 NMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRA 604 (1062)
T ss_pred hhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhh
Confidence 54310
Q ss_pred -------------------------------------------------------------------------------c
Q 000467 550 -------------------------------------------------------------------------------E 550 (1476)
Q Consensus 550 -------------------------------------------------------------------------------~ 550 (1476)
+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~ 684 (1062)
T KOG4229|consen 605 LKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQE 684 (1062)
T ss_pred hcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcc
Confidence 0
Q ss_pred --------------------cc-------c------C-----------------------CC-----------C------
Q 000467 551 --------------------ES-------S------R-----------------------SS-----------Y------ 557 (1476)
Q Consensus 551 --------------------~~-------~------~-----------------------~~-----------~------ 557 (1476)
.. + + .+ .
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 764 (1062)
T KOG4229|consen 685 RKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPD 764 (1062)
T ss_pred cCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCcc
Confidence 00 0 0 00 0
Q ss_pred -----c-cccHHH----------------HHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhHHHHHhhccChhh
Q 000467 558 -----K-FSSVAS----------------RFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLE 615 (1476)
Q Consensus 558 -----~-~~tv~~----------------~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~~v~~QLr~~gvle 615 (1476)
. ...++. ++......++..+....|.|++|++-|-.+....|+...|..|+++.|+++
T Consensus 765 ~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~ 844 (1062)
T KOG4229|consen 765 PCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELD 844 (1062)
T ss_pred ccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhc
Confidence 0 000111 233345568888888999999999999888888999999999999999999
Q ss_pred HHHHHhhcCCcccchHHHHHHHhhhhhhhcccChhHHHHHHHHHHHc--CcCCcccccceeccccccccchhhhh-hhhh
Q 000467 616 AVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYEEKALTEKILRKL--KLENFQLGRTKVFLRAGQIGILDSRR-AEVL 692 (1476)
Q Consensus 616 ~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~--~~~~~~iGkTkVFlr~~~~~~Le~~r-~~~~ 692 (1476)
..+++..+|+..+++.+|...+++..+.... .........+ +.++++.|++++|+...-...++..- .+..
T Consensus 845 ~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1062)
T KOG4229|consen 845 QEQVRRSLYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEAN 918 (1062)
T ss_pred cchheeccccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhH
Confidence 9999999999999999999999998873221 1111122211 34689999999999877655444322 2222
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHhhcccchhcc-cccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000467 693 DSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQCRGCLARKLYG-VKRETAAAISLQKYVRRWLSRHAFLKLSLAAIVIQ 771 (1476)
Q Consensus 693 ~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~iQa~~Rg~laR~~~~-~~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~IQ 771 (1476)
...+...|++++....++.+.++..+.+.+| |++++.|+... ......++..+|..|+.+..+..+.-.+.+++.+|
T Consensus 919 ~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 996 (1062)
T KOG4229|consen 919 DELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQ 996 (1062)
T ss_pred HHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchh
Confidence 2136678999999999999999999999999 88888877554 22344678889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 000467 772 SNIRGFSIRER 782 (1476)
Q Consensus 772 s~~Rg~~aR~~ 782 (1476)
..+++...+..
T Consensus 997 ~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 997 SPRSRPAYTMI 1007 (1062)
T ss_pred cccccchhhhh
Confidence 98887765554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=2e-30 Score=308.76 Aligned_cols=298 Identities=18% Similarity=0.302 Sum_probs=235.5
Q ss_pred HHHHHh-hhcCCCCCccchHHHHHHHHhcccc--cccch----hhHHHHHHHHHHHhhccC-CCCCcccchhhhHHHHHH
Q 000467 1080 LSRCIK-ENLGFNNGKPVAACIIYKSLVHWQA--FESER----TAIFDYIIEGINDVLKVG-DENSILPYWLSNASALLC 1151 (1476)
Q Consensus 1080 l~~~l~-~~~~~~~~~p~~A~ilf~cl~~~~~--~~~~~----~~ll~~ii~~i~~~i~~~-~d~~~layWLSN~~~Ll~ 1151 (1476)
.+..++ .+.+-..++..|-|- |..-.|.+. +..++ +.+|.++.++++.+++++ ++-..|+|||+|++++||
T Consensus 553 fL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflh 631 (1629)
T KOG1892|consen 553 FLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLH 631 (1629)
T ss_pred HHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHH
Confidence 333333 344444555555442 222223322 44444 789999999999999999 455589999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCCCcccccCCCCCcccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000467 1152 LLQRSLRSNGLLTANTPRTTGSTGLPGRIAYGIKSPFKYIGFGDGIPHVEARYPAILFKQQLTACVEKIFGLIRDNLKKE 1231 (1476)
Q Consensus 1152 ~Lqq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~p~~~~~qqL~~~v~~iy~~l~~~~~~~ 1231 (1476)
|++++.....+ .+..+..|...|+.+|..|+.+++.+
T Consensus 632 fik~Dr~ls~~-------------------------------------------~~~aq~vla~~vq~aFr~LV~clqse 668 (1629)
T KOG1892|consen 632 FIKQDRDLSRI-------------------------------------------TLDAQDVLAHLVQMAFRYLVHCLQSE 668 (1629)
T ss_pred HHHhccchhhe-------------------------------------------ehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987542111 22345677888999999999999999
Q ss_pred hhhhhhhhhcCCccccccCCCcCCCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHh
Q 000467 1232 LSPLLGSCIQVPKTARVHAGKLSRSPGVQQQSHTSQWDNIIKFLDSLMRRLRENHVPSFFIRKLITQVFSFINISLFNSL 1311 (1476)
Q Consensus 1232 l~~~L~~~i~~~~~~~~~~g~~~r~~~~~~~~~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~QlF~~Ina~lfN~L 1311 (1476)
|++-+...+..+ ....+...++|..|+..|.+|+.|+|+..|+.|+|+|||+|||+++||+|
T Consensus 669 l~~~~~afLden------------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~l 730 (1629)
T KOG1892|consen 669 LNNYMPAFLDEN------------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRL 730 (1629)
T ss_pred HHHHHHHHhhhc------------------cccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 999987655432 22334568899999999999999999999999999999999999999999
Q ss_pred hcc--CCCCCccchhHHhhchHHHHHHHhhcCcccccccHHhhHHHHHHHHHHhccccCccCHHHHHHccCCCCCHHHHH
Q 000467 1312 LLR--RECCTFSNGEYVKSGLAELEKWIVSAKEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLCPALTVRQIY 1389 (1476)
Q Consensus 1312 l~r--~~~cs~s~G~qIr~nls~LE~W~~~~~l~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~L~~~Ql~ 1389 (1476)
+.. ..+|+--||--|++.|..||.||+.+|+|.+++ |||..|+||++||+++|....|+..+ ...|.+||+.|+.
T Consensus 731 Vt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~ 807 (1629)
T KOG1892|consen 731 VTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQ 807 (1629)
T ss_pred cccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHH
Confidence 998 789999999999999999999999999999988 99999999999999998777777777 6899999999999
Q ss_pred HHHhcCccCCCCcccCCHHHHHHHHHHhhhcCCC---CCCCc--ccccCCccCCCCccc
Q 000467 1390 RICTMYWDDKYGTQSVSNEVVAQMREILNKDNHN---LSSNS--FLLDDDLSIPFSTED 1443 (1476)
Q Consensus 1390 kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~---~~~~~--~lld~~~~~Pf~~~~ 1443 (1476)
+||..|++++.| .++|.+++..+-.+.....+. .++.. |--+++.-+||..++
T Consensus 808 alLq~~~~~~~e-~~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 808 ALLQNYHCAPDE-PFIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred HHHhcCCCCCCC-CCCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 999999999999 599999999885544332221 11222 334556668887776
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=8.1e-28 Score=236.35 Aligned_cols=105 Identities=38% Similarity=0.642 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhHHHHHHhhccCCCCCccchhHHhhchHHHHHHHhhcCcccccccHHhhHHHHHHHHHHhccccCccCHH
Q 000467 1294 KLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVSAKEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLD 1373 (1476)
Q Consensus 1294 Q~f~QlF~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~l~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1373 (1476)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|++.+ ++++|.|++||++|||++|++..|.+
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999998544 68999999999999999765566665
Q ss_pred HHHHccCCCCCHHHHHHHHhcCccCCCC
Q 000467 1374 EIRQDLCPALTVRQIYRICTMYWDDKYG 1401 (1476)
Q Consensus 1374 ~i~~~~C~~L~~~Ql~kiL~~Y~~d~~e 1401 (1476)
.+ +++||+|||.||++||++|+||++|
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 66 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.22 E-value=6.5e-07 Score=122.50 Aligned_cols=230 Identities=16% Similarity=0.098 Sum_probs=116.7
Q ss_pred EEecCCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhhhhhhcccC-----hhHHHHHHHHH
Q 000467 585 IRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDES-----YEEKALTEKIL 659 (1476)
Q Consensus 585 irCIkpN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~-----~~~~~~~~~il 659 (1476)
|+|.-+|--.++..-.+..|+.+|++++ .+-|..--.| +..+..+..++.. ......++ .-.+.....++
T Consensus 577 V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm 651 (1930)
T KOG0161|consen 577 VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLM 651 (1930)
T ss_pred eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHH
Confidence 9999999888888888999999999999 8877766555 6667777766655 21111111 11233333344
Q ss_pred HHcCcCCcccccceecc---ccccc---cchhhhhhhhhhhHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHH--hhccc
Q 000467 660 RKLKLENFQLGRTKVFL---RAGQI---GILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQC--RGCLA 731 (1476)
Q Consensus 660 ~~~~~~~~~iGkTkVFl---r~~~~---~~Le~~r~~~~~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~iQa~~--Rg~la 731 (1476)
..+....-.|=+-=|+. ++|.+ ..|..+|-.-.-. .+.|.+ .||-.|-.|..++.---.+.... .|+..
T Consensus 652 ~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLE-gIRicR--~GfPnr~~~~eFrqRy~lla~~~~~~~~~d 728 (1930)
T KOG0161|consen 652 TTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLE-GIRICR--QGFPNRMPFQEFRQRYELLAADEPKKGFSD 728 (1930)
T ss_pred HHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHH-HHHHHH--hhCccccchHHHHHhHHhhhhhhccccccc
Confidence 33322211111111221 11111 1111221111111 112211 23433333332221100111100 01110
Q ss_pred chhcccccchhhHHHH--------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000467 732 RKLYGVKRETAAAISL--------------------QKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKR-HK 790 (1476)
Q Consensus 732 R~~~~~~r~~~aai~I--------------------Q~~~R~~~~Rk~y~~~r~aai~IQs~~Rg~~aR~~~~~~r~-~~ 790 (1476)
- ..++..| .+-+-+.+--.+-..+...++.+|+.+||+++|+.+..+.+ ..
T Consensus 729 ~--------k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ 800 (1930)
T KOG0161|consen 729 G--------KKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLD 800 (1930)
T ss_pred c--------chhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112211 11222333333444555678889999999999998876665 67
Q ss_pred HHHHHHHhHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHH
Q 000467 791 AATVIQACWRMCKFRSAFQHHQ---TSIIAIQCRWRQKLAKRE 830 (1476)
Q Consensus 791 Aa~~IQ~~~R~~~~R~~y~~~~---~a~i~iQ~~~R~~~arr~ 830 (1476)
|+.+||+..|.|...+.|.+++ +.-..|++.-+....++.
T Consensus 801 ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~ 843 (1930)
T KOG0161|consen 801 AIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAK 843 (1930)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 7889999999998888765543 444556665554444443
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.64 E-value=3.9e-08 Score=107.46 Aligned_cols=90 Identities=24% Similarity=0.245 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhchHHHhhc-cccccCCC
Q 000467 144 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFG-NARTVRND 222 (1476)
Q Consensus 144 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFG-nAkT~rN~ 222 (1476)
||+.+..++..|+ ++.|+||+..|+||||||.|..--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 9998889999998 5799999999999999997732110 00000011222 3777888899999 99999999
Q ss_pred CCCccccEEEEEeCCCCccc
Q 000467 223 NSSRFGKFVEIQFDTNGRIS 242 (1476)
Q Consensus 223 NSSRfgk~~~l~f~~~g~i~ 242 (1476)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654443
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.62 E-value=1.4e-06 Score=111.03 Aligned_cols=86 Identities=34% Similarity=0.407 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHH
Q 000467 741 TAAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQC 820 (1476)
Q Consensus 741 ~~aai~IQ~~~R~~~~Rk~y~~~r~aai~IQs~~Rg~~aR~~~~~~r~~~Aa~~IQ~~~R~~~~R~~y~~~~~a~i~iQ~ 820 (1476)
..+++.||+.+|+|..|+.|.++|.+++.+|+.+||+++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999 333 789999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000467 821 RWRQKLAKR 829 (1476)
Q Consensus 821 ~~R~~~arr 829 (1476)
.+|++++|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999998
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.58 E-value=2.6e-05 Score=102.49 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhHHHHH-
Q 000467 741 TAAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQ- 819 (1476)
Q Consensus 741 ~~aai~IQ~~~R~~~~Rk~y~~~r~aai~IQs~~Rg~~aR~~~~~~r~~~Aa~~IQ~~~R~~~~R~~y~~~~~a~i~iQ- 819 (1476)
..+++.||+.|||+..|++|.+....+..+|...+|+..|+.+..-....+++.+|..||....|..|+.....+..+|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~ 824 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK 824 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999998887777778899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 000467 820 CRWRQKLAKR 829 (1476)
Q Consensus 820 ~~~R~~~arr 829 (1476)
..+|....+.
T Consensus 825 ~i~~~~~~~~ 834 (1463)
T COG5022 825 TIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHhH
Confidence 5566555554
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.34 E-value=6.9e-07 Score=113.68 Aligned_cols=128 Identities=27% Similarity=0.370 Sum_probs=79.6
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHhhcccchhcccccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000467 691 VLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLKLSLAAIVI 770 (1476)
Q Consensus 691 ~~~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~iQa~~Rg~laR~~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~I 770 (1476)
....++..||+.+|+|..|+.|+.++.-++.||+.+||+..|+.|.++-. +.... ++-|.+. ..+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~w--Sv~~l---------ek~~lrw----R~k 872 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITW--SVGVL---------EKLILRW----RRK 872 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheech--hhhHH---------HHHHHHH----HHh
Confidence 34568899999999999999999999999999999999999999987642 11111 1111111 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000467 771 QSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFR--SAFQHHQTSIIAIQCRWRQKLAKRELRRLK 835 (1476)
Q Consensus 771 Qs~~Rg~~aR~~~~~~r~~~Aa~~IQ~~~R~~~~R--~~y~~~~~a~i~iQ~~~R~~~arr~~~~lr 835 (1476)
|..+||+..|+..+..- .||+.||..+|.|+.- ..|.++.+|++.||+.+|-+.++.+++++.
T Consensus 873 ~~g~Rgfk~~~~~e~~~--~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 873 GKGFRGFKGRALFEEQE--TAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hhhhcccccccchhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44555554444433222 2555555555555554 445555555555555555555555554443
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.05 E-value=1e-05 Score=65.39 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=33.2
Q ss_pred CcEEEEecCCCCEEEEEEEEeecCCEEEEEeCCCcee
Q 000467 6 GSKVWVEDKDLAWVAAEVVSDSVGRHVQVLTATGKKF 42 (1476)
Q Consensus 6 g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~~g~~~ 42 (1476)
+.+|||||++++|+.|+| .+.+|+.++|++.+|+++
T Consensus 1 K~~vWvpD~~egfv~g~I-~~~~g~~vtV~~~~G~~~ 36 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEI-IEEEGDKVTVKTEDGKEV 36 (42)
T ss_dssp TTEEEEEESSSSEEEEEE-EEEESSEEEEEETTTEEE
T ss_pred CCEEEEeCCcccEEEEEE-EEEcCCEEEEEECCCCEE
Confidence 358999999999999999 688999999999999987
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.93 E-value=2.6e-05 Score=99.80 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHh-h-----------hHHHHHHHHHHhhcccchhcccccchhhHHHHHHHHHHHHHHHHHH
Q 000467 694 SAARCIQHRWRTFIAHRNFVS-I-----------RAAAFVLQAQCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFL 761 (1476)
Q Consensus 694 ~aa~~IQ~~~R~~l~Rk~~~~-~-----------r~a~i~iQa~~Rg~laR~~~~~~r~~~aai~IQ~~~R~~~~Rk~y~ 761 (1476)
++|..||..+|.-..++.-.+ + .-..+.++..+++ +.......|+..||+.+|+|..|+.|+
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~------~~~r~~~~aa~~iq~~f~~yk~r~~~l 830 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSM------CDDRSDPAAASRIQKKFRGYKQRKEFL 830 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhc------CccccchhHHHHhhhhhhhHHhhhhhc
Confidence 567778888887554433221 1 1122333333332 233344578999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 000467 762 KLSLAAIVIQSNIRGFSIRERFLHR--------KRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAK 828 (1476)
Q Consensus 762 ~~r~aai~IQs~~Rg~~aR~~~~~~--------r~~~Aa~~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~ar 828 (1476)
.+|.-++.||+++||+..|+.|... +...++.++|+.+|+|+.|....+...+++.+|.++|-+..-
T Consensus 831 ~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~ 905 (975)
T KOG0520|consen 831 STRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQL 905 (975)
T ss_pred ccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHH
Confidence 9999999999999999999988542 224677889999999999999988888899999998877554
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.76 E-value=0.053 Score=68.41 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000467 855 LEDLTWRVQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDAAKLAT 901 (1476)
Q Consensus 855 i~el~~rl~~ek~l~~~~~eak~~E~~~Lq~~le~l~~el~~~~~~~ 901 (1476)
..+-.......|++..++.+....|...++.++++|+.+++-++++.
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566777777777777888888888888888877666544
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.035 Score=68.83 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 000467 932 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQ-------KENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 1004 (1476)
Q Consensus 932 ~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~-------~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~ 1004 (1476)
+-.+...+..|+.+++.|+.++.++..++...+ .+.+.+.+..+....++.+|+.++.++++++.+|--|.+.
T Consensus 432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~ 511 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQE 511 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 333455555555566666666666555555443 3333333333333444555555555555555555555555
Q ss_pred HHHhh
Q 000467 1005 LRQKA 1009 (1476)
Q Consensus 1005 Lkqk~ 1009 (1476)
|..++
T Consensus 512 l~~ql 516 (1118)
T KOG1029|consen 512 LNHQL 516 (1118)
T ss_pred HHHHH
Confidence 54443
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.34 E-value=0.086 Score=66.69 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=19.0
Q ss_pred cccHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000467 1265 TSQWDNIIKFLDSLMRRLRENHVPSFFI 1292 (1476)
Q Consensus 1265 ~~~~~~il~~L~~~~~~L~~~~v~~~l~ 1292 (1476)
...+...+..+++.+..+....++++..
T Consensus 898 ~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 898 YECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3456777778888888777766655543
No 35
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.48 Score=59.39 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=15.1
Q ss_pred cCCCCCccchhHHhhchHHHHHHH
Q 000467 1314 RRECCTFSNGEYVKSGLAELEKWI 1337 (1476)
Q Consensus 1314 r~~~cs~s~G~qIr~nls~LE~W~ 1337 (1476)
.++-.-|--|.-+.-+=-+.--|+
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 456677877776666655555554
No 36
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.15 E-value=0.0027 Score=77.79 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh---------
Q 000467 741 TAAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHH--------- 811 (1476)
Q Consensus 741 ~~aai~IQ~~~R~~~~Rk~y~~~r~aai~IQs~~Rg~~aR~~~~~~r~~~Aa~~IQ~~~R~~~~R~~y~~~--------- 811 (1476)
..-++.||+.||||.+|.+|++++.+++.|+ |+|.+..+ ..+..||+.+|++..++.|.+-
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~~ 765 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPPLV 765 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCchH
Confidence 3467889999999999999999999999999 77744322 4556789999999999999653
Q ss_pred -hhhHHHHHHHHHHHHHHHHHH
Q 000467 812 -QTSIIAIQCRWRQKLAKRELR 832 (1476)
Q Consensus 812 -~~a~i~iQ~~~R~~~arr~~~ 832 (1476)
+.+.-.+|..+-+|.|.+-++
T Consensus 766 Lr~~~~~L~~lf~rwra~~~~~ 787 (1001)
T KOG0164|consen 766 LREFEELLRELFIRWRAWQILK 787 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665555555544433
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.23 Score=64.51 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q 000467 988 MQSLEEKLSHLEDENHVLRQKAL 1010 (1476)
Q Consensus 988 ~~~lee~l~~Le~E~~~Lkqk~~ 1010 (1476)
++-++..+.+-+.|+..|++++.
T Consensus 631 ~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 631 LEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666777776643
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.08 E-value=0.16 Score=63.13 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=6.4
Q ss_pred HHHHHHHhHHHHHHHHH
Q 000467 980 KCSSLQQNMQSLEEKLS 996 (1476)
Q Consensus 980 ~i~~L~~e~~~lee~l~ 996 (1476)
++..|+.+..+++..+.
T Consensus 234 ~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 234 QLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.04 E-value=2.3 Score=56.33 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhH
Q 000467 877 SVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTL 956 (1476)
Q Consensus 877 ~~E~~~Lq~~le~l~~el~~~~~~~~~e~~~~~~~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~el 956 (1476)
..|++.+.+.+..+..+..+++......++...+.......+.+.+..++++. ...+..+..+.+..++.+..+++.+
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~--~~~~~~~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT--NNELGSELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444333333333443333333333333332111 2334444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 957 ELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 957 e~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
+.....++.+.++..+++.+.+++....+.+...+...+.....+++.|+
T Consensus 414 e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 414 EEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555554
No 40
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.96 E-value=0.00058 Score=90.14 Aligned_cols=268 Identities=18% Similarity=0.105 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChh-HHHHHhhccChhhHHHHHhhcCCcccchHHHHHHHhhh
Q 000467 562 VASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENP-SILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLL 640 (1476)
Q Consensus 562 v~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~p~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 640 (1476)
++.+++-++.+....|.+..+|+.|||++|+.-.+..++.. .+..++...|..++....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 44555567778888888889999999999999888888877 88999999999999999999999999999998877754
Q ss_pred hhhhcccChhHHHHHHHHHHHcCcCCcccccceeccccccccchhhhhhhhhh--------------------------h
Q 000467 641 ALEFMDESYEEKALTEKILRKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLD--------------------------S 694 (1476)
Q Consensus 641 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~~~--------------------------~ 694 (1476)
.-.......-...+|..++.+-+.+.+..+.++++.+.-.-..+.-.+.+... .
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 32211111123456677888777778888888888765432222111111111 1
Q ss_pred HHHHHHHHHHhhHHHHHHHh----hhHHHHHHHHHHhhcccchhccc---------------------------------
Q 000467 695 AARCIQHRWRTFIAHRNFVS----IRAAAFVLQAQCRGCLARKLYGV--------------------------------- 737 (1476)
Q Consensus 695 aa~~IQ~~~R~~l~Rk~~~~----~r~a~i~iQa~~Rg~laR~~~~~--------------------------------- 737 (1476)
.+..||+-+.....+..+.. .-...+.+|..|-|...+.....
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 33445554444333333221 12356666666665443222110
Q ss_pred ---------------------cc--------chhh---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-
Q 000467 738 ---------------------KR--------ETAA---AISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFL- 784 (1476)
Q Consensus 738 ---------------------~r--------~~~a---ai~IQ~~~R~~~~Rk~y~~~r~aai~IQs~~Rg~~aR~~~~- 784 (1476)
.+ .... +...|++++....++.+.++..+.+.+| ++++..|+...
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 00 0001 2345667777777788888888888888 77777776444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 000467 785 HRKRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKREL 831 (1476)
Q Consensus 785 ~~r~~~Aa~~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~arr~~ 831 (1476)
......+++-+|..|+.+..+..+...+++.+.+|..+++..-+...
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 33346778888999999999999988888888899888776555444
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=3.2 Score=55.13 Aligned_cols=50 Identities=22% Similarity=0.168 Sum_probs=39.3
Q ss_pred cHHhhHHHHHHHHHHhccccCccCHHHHHHccC---CCCCHHHHHHHHhcCccCCC
Q 000467 1348 SWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLC---PALTVRQIYRICTMYWDDKY 1400 (1476)
Q Consensus 1348 ~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C---~~L~~~Ql~kiL~~Y~~d~~ 1400 (1476)
..+.|.|-.+-+.|-|.| ++.++..|- .+- -.||+.=|+=.|.+|+|..+
T Consensus 1168 lVDslDPFseGV~FSVrP--pKKSWK~I~-NLSGGEKTLSSLALVFALH~YkPTPl 1220 (1293)
T KOG0996|consen 1168 LVDSLDPFSEGVMFSVRP--PKKSWKNIS-NLSGGEKTLSSLALVFALHHYKPTPL 1220 (1293)
T ss_pred eeccCCCcccCceEEeeC--chhhhhhcc-cCCcchhHHHHHHHHHHHHccCCCCc
Confidence 357888999999999988 677887772 332 47999999999999998644
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.85 E-value=2.3 Score=59.99 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 000467 973 KLREVEQKCSSLQQNMQSLEEKLSHLE 999 (1476)
Q Consensus 973 ~l~~~e~~i~~L~~e~~~lee~l~~Le 999 (1476)
++..++.++..++.++.+++.++..++
T Consensus 400 ~~~~~~~~~~~l~~~l~~l~~~~~~~~ 426 (1164)
T TIGR02169 400 EINELKRELDRLQEELQRLSEELADLN 426 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334433333333333333
No 43
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.77 E-value=0.16 Score=54.38 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 933 AEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 933 ~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
..+..|...|+....++++....+-.+...++++.+.+..++..++++...+..+.+.+..+..+|..++..|+.+
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 3344444444444444444444444444444444555555555555555555555555555555555555555444
No 44
>PRK11637 AmiB activator; Provisional
Probab=96.70 E-value=0.61 Score=58.04 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 000467 974 LREVEQKCSSLQQNMQSLEEKLSHLEDENHVL 1005 (1476)
Q Consensus 974 l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~L 1005 (1476)
+..++.++...+.++..++....+++..+..+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 45
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.68 E-value=0.0021 Score=43.86 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 000467 790 KAATVIQACWRMCKFRSAFQ 809 (1476)
Q Consensus 790 ~Aa~~IQ~~~R~~~~R~~y~ 809 (1476)
+||+.||++||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46666666666666666653
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.74 Score=59.74 Aligned_cols=61 Identities=28% Similarity=0.342 Sum_probs=32.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 948 SLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 948 ~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
....++++......+.+.+.+.+.-+.++++.++..+++.+..++.+++.++.++..|+-+
T Consensus 798 ~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 798 TAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444445555555556666666666666666666666666555543
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.60 E-value=0.31 Score=50.83 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHH
Q 000467 976 EVEQKCSSLQQNMQSLEEKLSHLED 1000 (1476)
Q Consensus 976 ~~e~~i~~L~~e~~~lee~l~~Le~ 1000 (1476)
..+.+...|..+....+.++..++.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 48
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.59 E-value=1.2 Score=55.80 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhcccchhcc
Q 000467 717 AAAFVLQAQCRGCLARKLYG 736 (1476)
Q Consensus 717 ~a~i~iQa~~Rg~laR~~~~ 736 (1476)
.+++.+|++.|||++|+++.
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45667777777777777654
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.57 E-value=4 Score=57.83 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 976 EVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 976 ~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
..+++...+..++..+++++..++.+.+.++
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 50
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.50 E-value=0.072 Score=71.03 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=13.9
Q ss_pred ccchhHHhhchHHHHHHHh
Q 000467 1320 FSNGEYVKSGLAELEKWIV 1338 (1476)
Q Consensus 1320 ~s~G~qIr~nls~LE~W~~ 1338 (1476)
...+.-+.-++..||+|=.
T Consensus 1191 ~~lk~~~i~~l~eLE~~g~ 1209 (1401)
T KOG2128|consen 1191 SELKNSIIKDLHELEQLGR 1209 (1401)
T ss_pred HHHHHHHHHhHHHHHHhcc
Confidence 3456667788999999964
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.47 E-value=5.6 Score=52.93 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 933 AEIRKENAVLKSSL-DSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 933 ~~L~~e~~~Lk~~l-~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
..+++.+..++++. ..+..++.+.+.++..++++.+++...+..+.++.+.+.++....+++....+.+...++
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334444444333 333334444444444444444444444444444444444444444444444444444444
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.46 E-value=3.2 Score=54.33 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=43.6
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 939 NAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 939 ~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
.+.|-..+..+.++..-||..+....+-+.++-..|-++..++.-++..+...+.+|.+|+..+..+-
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555665555555555666667777777777777777777777777777666544
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=6 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=16.2
Q ss_pred EcCCCCCchhHHHHHHHHHHHhhcCC
Q 000467 166 VSGESGAGKTETTKLIMQYLTFVGGR 191 (1476)
Q Consensus 166 isGeSGaGKTe~~k~~~~yla~~~~~ 191 (1476)
|+|=.|||||- |+.-++.+-|-
T Consensus 30 ITGlNGSGKSN----ILDsICFvLGI 51 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLGI 51 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHcc
Confidence 48999999996 56666665443
No 54
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.33 E-value=0.003 Score=74.85 Aligned_cols=56 Identities=29% Similarity=0.376 Sum_probs=43.6
Q ss_pred EcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHH
Q 000467 114 VNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETT 178 (1476)
Q Consensus 114 vNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 178 (1476)
+|||...| |+..+..-++. +.+||-|-| -|.-|..-..||+||++||.|||||+-.
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 99999998 88876665553 357886544 3566777789999999999999999753
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.32 E-value=1.4 Score=52.83 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Q 000467 930 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENN 968 (1476)
Q Consensus 930 ~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~ 968 (1476)
.++..++.+...++.+++..++++.+++.++..++...+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333
No 56
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.26 E-value=10 Score=53.61 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.7
Q ss_pred cchhhh
Q 000467 1140 PYWLSN 1145 (1476)
Q Consensus 1140 ayWLSN 1145 (1476)
.|||++
T Consensus 617 ~~~lg~ 622 (1164)
T TIGR02169 617 KYVFGD 622 (1164)
T ss_pred HHHCCC
Confidence 344444
No 57
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.26 E-value=0.71 Score=59.14 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhccccCccCHHHHHHccCC---CCCHHHHHHHH
Q 000467 1353 NYIRQAVGFLVIHQKRKKSLDEIRQDLCP---ALTVRQIYRIC 1392 (1476)
Q Consensus 1353 ~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~---~L~~~Ql~kiL 1392 (1476)
..+++|++-++.. ....++++ +|. +=+.+||+.-.
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLI--Vas~EIAAsTaQLVaAS 887 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELI--VASQEIAASTAQLVAAS 887 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHH--HhhhHHHHHHHHHHHHH
Confidence 4567778777765 34444432 232 55677877554
No 58
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.24 E-value=1.4 Score=54.88 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=11.8
Q ss_pred HHHHHhhcCCcccchHHHH
Q 000467 616 AVRISLAGYPTRRTYSDFV 634 (1476)
Q Consensus 616 ~iri~~~gyp~r~~~~~F~ 634 (1476)
.|-|.+.||.+-..|--|+
T Consensus 39 WIGiFKVGw~s~rdY~Tf~ 57 (546)
T PF07888_consen 39 WIGIFKVGWSSTRDYYTFV 57 (546)
T ss_pred eeEEeecCCCchhheeeEE
Confidence 4566777877665555543
No 59
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.22 E-value=0.75 Score=57.31 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 981 CSSLQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 981 i~~L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
...|++++..+++.+..-+.+...|+.+
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.20 E-value=1.6 Score=56.30 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=6.6
Q ss_pred hhhHHHHHhhcCCc
Q 000467 613 VLEAVRISLAGYPT 626 (1476)
Q Consensus 613 vle~iri~~~gyp~ 626 (1476)
++++|...-.|-|.
T Consensus 43 ll~aI~~~l~G~~~ 56 (562)
T PHA02562 43 MLEALTFALFGKPF 56 (562)
T ss_pred HHHHHHHHHcCCCc
Confidence 44555544444443
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.19 E-value=0.82 Score=47.74 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000467 934 EIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKL 995 (1476)
Q Consensus 934 ~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l 995 (1476)
.+...+..|+.+++.....+.+...++.++.............++.+...+...+..++.++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333333333444444444444444444433
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.19 E-value=7 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=15.7
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHhh
Q 000467 110 ILIAVNPFTKLPHLYNVHMMEQYK 133 (1476)
Q Consensus 110 iLiavNP~~~l~~~y~~~~~~~y~ 133 (1476)
|+=++-|--.+|+-|++++.+.-+
T Consensus 206 ifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 206 IFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred EEEecCCCCCCCCchhHHHHHHhh
Confidence 445677766777777777766443
No 63
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.14 E-value=11 Score=53.03 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 000467 967 NNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLED 1000 (1476)
Q Consensus 967 ~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~ 1000 (1476)
.+.+...+.+++.++..++....+++.+++.++.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 455 LEELRDRLKELERELAELQEELQRLEKELSSLEA 488 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444433333
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.12 E-value=1.3 Score=57.51 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 000467 850 KLERQLEDLTWRVQ 863 (1476)
Q Consensus 850 ~le~ki~el~~rl~ 863 (1476)
.|+.+++.|..++.
T Consensus 412 nLs~k~e~Leeri~ 425 (1195)
T KOG4643|consen 412 NLSKKHEILEERIN 425 (1195)
T ss_pred hHhHHHHHHHHHHH
Confidence 34444444444443
No 65
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.05 E-value=0.092 Score=70.06 Aligned_cols=89 Identities=21% Similarity=0.215 Sum_probs=54.9
Q ss_pred HHHHhhcccchhccccc-----chhhHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 000467 723 QAQCRGCLARKLYGVKR-----ETAAAISLQKYVRRWLS----RHAFLKLSLAAIVIQSNIRGFSIRERFLHRKR----- 788 (1476)
Q Consensus 723 Qa~~Rg~laR~~~~~~r-----~~~aai~IQ~~~R~~~~----Rk~y~~~r~aai~IQs~~Rg~~aR~~~~~~r~----- 788 (1476)
|+..||+..|..+.... .......||..|||++. ...+.....-++.+|++.||+.+|+.+..+.+
T Consensus 542 qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~ 621 (1401)
T KOG2128|consen 542 QASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDN 621 (1401)
T ss_pred hhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 67777776665544321 23455667777777663 22233445667777888888877776654332
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q 000467 789 HKAATVIQACWRMCKFRSAFQHH 811 (1476)
Q Consensus 789 ~~Aa~~IQ~~~R~~~~R~~y~~~ 811 (1476)
..+.+.||++.|+...|..|+.+
T Consensus 622 ~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 622 MTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred hhhHHHHHHHHHhcccchHHHHH
Confidence 45666777777777777777655
No 66
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.00 E-value=13 Score=52.53 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=4.3
Q ss_pred HHHHHHcCc
Q 000467 656 EKILRKLKL 664 (1476)
Q Consensus 656 ~~il~~~~~ 664 (1476)
..+|..+++
T Consensus 125 ~~~l~~~~i 133 (1179)
T TIGR02168 125 QDLFLDTGL 133 (1179)
T ss_pred HHHHhccCC
Confidence 445554443
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.93 E-value=0.5 Score=53.05 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHH
Q 000467 935 IRKENAVLKSSLDSLEKKNSTLE 957 (1476)
Q Consensus 935 L~~e~~~Lk~~l~~l~~~i~ele 957 (1476)
++.+...++.++.++++++...+
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 68
>PRK02224 chromosome segregation protein; Provisional
Probab=95.92 E-value=5.8 Score=54.30 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=5.0
Q ss_pred cCCHHHHHHHHH
Q 000467 1404 SVSNEVVAQMRE 1415 (1476)
Q Consensus 1404 ~v~~~~i~~v~~ 1415 (1476)
.+++.-...+..
T Consensus 823 ~lD~~~~~~~~~ 834 (880)
T PRK02224 823 FLDSGHVSQLVD 834 (880)
T ss_pred cCCHHHHHHHHH
Confidence 344444444433
No 69
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.90 E-value=0.0091 Score=40.76 Aligned_cols=18 Identities=44% Similarity=0.750 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 000467 743 AAISLQKYVRRWLSRHAF 760 (1476)
Q Consensus 743 aai~IQ~~~R~~~~Rk~y 760 (1476)
||++||+.||||++|+.|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555555555555544
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=95.89 E-value=1.5 Score=60.04 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.3
Q ss_pred EEEcCCCCCchhHHHHH
Q 000467 164 ILVSGESGAGKTETTKL 180 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~ 180 (1476)
.+|+|++|||||+....
T Consensus 26 ~~i~G~nG~GKStil~a 42 (880)
T PRK03918 26 NLIIGQNGSGKSSILEA 42 (880)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 57899999999987653
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.85 E-value=2.8 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhh
Q 000467 932 MAEIRKENAVLKSSLDSLEKKNS 954 (1476)
Q Consensus 932 ~~~L~~e~~~Lk~~l~~l~~~i~ 954 (1476)
+..+..+...++.+++.++..+.
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 72
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.79 E-value=5.6 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhH
Q 000467 975 REVEQKCSSLQQNMQSLEEKLSHL 998 (1476)
Q Consensus 975 ~~~e~~i~~L~~e~~~lee~l~~L 998 (1476)
.+-+.+.+.|+.+...+|.+..++
T Consensus 255 ~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 255 RERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333
No 73
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.71 E-value=17 Score=51.48 Aligned_cols=6 Identities=0% Similarity=-0.545 Sum_probs=2.3
Q ss_pred chhhhH
Q 000467 1141 YWLSNA 1146 (1476)
Q Consensus 1141 yWLSN~ 1146 (1476)
.++.++
T Consensus 596 ~~~~~~ 601 (1179)
T TIGR02168 596 NIEGFL 601 (1179)
T ss_pred ccCchh
Confidence 343333
No 74
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.68 E-value=5.3 Score=45.57 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 000467 969 NTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENH 1003 (1476)
Q Consensus 969 ~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~ 1003 (1476)
.+..++.+++.........+..|+..+..++.++.
T Consensus 180 ~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 180 DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333333333444444433333333
No 75
>PRK09039 hypothetical protein; Validated
Probab=95.64 E-value=2.1 Score=51.53 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 930 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVE 978 (1476)
Q Consensus 930 ~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e 978 (1476)
....+...+...|+.+++.++.++..++..+..++.+..+...++.+++
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555544444444433333333333
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.56 E-value=4.3 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHH
Q 000467 932 MAEIRKENAVLKSSLDSLEKKNSTLE 957 (1476)
Q Consensus 932 ~~~L~~e~~~Lk~~l~~l~~~i~ele 957 (1476)
+......|..|++++.++....-.+.
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666655555444333
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.52 E-value=4.5 Score=43.68 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHH
Q 000467 905 CNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKEN-------NNTIEKLREV 977 (1476)
Q Consensus 905 ~~~~~~~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~-------~~l~~~l~~~ 977 (1476)
+++.+.+..+...++++...| ..++..|..++.++..+.+.+.++..+|-.+...++... ......+.+.
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L---~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~ 156 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSL---VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSER 156 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333 334555566666666555555555555544444333322 2223334444
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhh
Q 000467 978 EQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 1009 (1476)
Q Consensus 978 e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~ 1009 (1476)
...+..|...++....-...|..|...|.+++
T Consensus 157 t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 157 TQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444455666666666554
No 78
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.51 E-value=2.2 Score=44.08 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhh
Q 000467 977 VEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 1009 (1476)
Q Consensus 977 ~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~ 1009 (1476)
.+.+...|..++..++.++.+|..+|..|-.++
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888888888888887765
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.35 E-value=9.1 Score=46.49 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 000467 973 KLREVEQKCSSLQQNMQSLEEKLSHLE 999 (1476)
Q Consensus 973 ~l~~~e~~i~~L~~e~~~lee~l~~Le 999 (1476)
++...++++.+|..+-.+|...+..++
T Consensus 218 ~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 218 ELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444445555555555555555555
No 80
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.35 E-value=10 Score=50.17 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 971 IEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 971 ~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
...+++++.++.+-+..++..+.++..|++++..+.
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444444444444555555555555433
No 81
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.35 E-value=5.2 Score=48.20 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000467 409 DALAKTVYSRLFDWLV 424 (1476)
Q Consensus 409 dalak~lY~~lF~wiV 424 (1476)
-+|++.+|+-|=+|+=
T Consensus 50 ~Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLLG 65 (527)
T ss_pred chhhHHHHhhhhhccC
Confidence 4688888888777654
No 82
>PRK09039 hypothetical protein; Validated
Probab=95.27 E-value=1.4 Score=53.01 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000467 933 AEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLS 996 (1476)
Q Consensus 933 ~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~ 996 (1476)
..+..+...++....+..-++..+..++..++.+...+...|...+++....+..++.++.++.
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444444443
No 83
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.16 E-value=6.7 Score=46.49 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000467 968 NNTIEKLREVEQKCSSLQQNMQSLEE 993 (1476)
Q Consensus 968 ~~l~~~l~~~e~~i~~L~~e~~~lee 993 (1476)
.++...+++...++..++.++..++.
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433
No 84
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.13 E-value=9.2 Score=44.99 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000467 966 ENNNTIEKLREVEQKCSSLQQNMQSLEEKL 995 (1476)
Q Consensus 966 e~~~l~~~l~~~e~~i~~L~~e~~~lee~l 995 (1476)
...+...++..+|.....|++++.++|.-.
T Consensus 253 ~I~~re~~lq~lEt~q~~leqeva~le~yy 282 (499)
T COG4372 253 QIRERERQLQRLETAQARLEQEVAQLEAYY 282 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666666666544
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.00 E-value=28 Score=49.80 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.3
Q ss_pred cCCcccchHHHH
Q 000467 623 GYPTRRTYSDFV 634 (1476)
Q Consensus 623 gyp~r~~~~~F~ 634 (1476)
|.|.++...+|+
T Consensus 125 ~~~~~v~~~d~l 136 (1486)
T PRK04863 125 GLPDSVQPTDLL 136 (1486)
T ss_pred cCccccChHHHH
Confidence 445555555555
No 86
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.74 E-value=8.5 Score=42.66 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=6.1
Q ss_pred HhHHHHHHHHHHh
Q 000467 996 SHLEDENHVLRQK 1008 (1476)
Q Consensus 996 ~~Le~E~~~Lkqk 1008 (1476)
..|+.|...|+++
T Consensus 167 qRLkdEardlrqe 179 (333)
T KOG1853|consen 167 QRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 87
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=5.9 Score=48.42 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=5.8
Q ss_pred ccchhhhHHHHHH
Q 000467 1139 LPYWLSNASALLC 1151 (1476)
Q Consensus 1139 layWLSN~~~Ll~ 1151 (1476)
.+==|++.+.+.+
T Consensus 490 ~SdeLaqlyh~vc 502 (772)
T KOG0999|consen 490 FSDELAQLYHHVC 502 (772)
T ss_pred hhHHHHHHHHHHH
Confidence 3334555444443
No 88
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.67 E-value=11 Score=43.48 Aligned_cols=133 Identities=26% Similarity=0.326 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHhhhH
Q 000467 878 VEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELV-AMAEIRKENAVLKSSLDSLEKKNSTL 956 (1476)
Q Consensus 878 ~E~~~Lq~~le~l~~el~~~~~~~~~e~~~~~~~~~~l~~~~~e~~~l~e~~~-~~~~L~~e~~~Lk~~l~~l~~~i~el 956 (1476)
.....|..+++.....|..+...........+.+.-.+.....||..+++.+. .+..+...+.-|-+++...+.+...+
T Consensus 84 q~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsL 163 (305)
T PF14915_consen 84 QNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSL 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655544433333334444445556666666655533 36666666666666666666666655
Q ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHhHHHHHHHHHHhhh
Q 000467 957 ELELIKA--------------QKENNNTIEKLREVEQKCS-------SLQQNMQSLEEKLSHLEDENHVLRQKAL 1010 (1476)
Q Consensus 957 e~~~~e~--------------~~e~~~l~~~l~~~e~~i~-------~L~~e~~~lee~l~~Le~E~~~Lkqk~~ 1010 (1476)
+.++... ++...+...++++++..++ .....-+.+++++.++++||-.|++++-
T Consensus 164 e~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd 238 (305)
T PF14915_consen 164 EIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD 238 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433 2333333334444433333 2233346678889999999999998864
No 89
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.67 E-value=0.036 Score=40.00 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHh
Q 000467 789 HKAATVIQACWRMCKFRSAFQ 809 (1476)
Q Consensus 789 ~~Aa~~IQ~~~R~~~~R~~y~ 809 (1476)
.++|+.||++||||++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888888888773
No 90
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.65 E-value=6.5 Score=56.09 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=16.7
Q ss_pred eEEEEcCCCCCchhHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~ 182 (1476)
...+|+|++|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367999999999998665544
No 91
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.63 E-value=14 Score=48.62 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=12.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000467 947 DSLEKKNSTLELELIKAQKENNNTIEKL 974 (1476)
Q Consensus 947 ~~l~~~i~ele~~~~e~~~e~~~l~~~l 974 (1476)
+.+.++.++++..+..+++++..+.+++
T Consensus 526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI 553 (1195)
T KOG4643|consen 526 ELLSNKLEELEELLGNLEEENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444444444445555444444
No 92
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.58 E-value=13 Score=44.07 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhh
Q 000467 964 QKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 1009 (1476)
Q Consensus 964 ~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~ 1009 (1476)
....++....+...++-....+.+++.+..++.+|+.|+..++.+-
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKW 267 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666677778888888888888888888887653
No 93
>PRK03918 chromosome segregation protein; Provisional
Probab=94.53 E-value=22 Score=48.69 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=8.4
Q ss_pred cCCHHHHHHHHHHhh
Q 000467 1404 SVSNEVVAQMREILN 1418 (1476)
Q Consensus 1404 ~v~~~~i~~v~~~~~ 1418 (1476)
.+++.....+...+.
T Consensus 824 ~lD~~~~~~l~~~l~ 838 (880)
T PRK03918 824 FLDEERRRKLVDIME 838 (880)
T ss_pred ccCHHHHHHHHHHHH
Confidence 566666555555444
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.49 E-value=9.4 Score=42.05 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 000467 931 AMAEIRKENAVLKSSLDSLEKKNSTLELELIK 962 (1476)
Q Consensus 931 ~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e 962 (1476)
..++|..+.+.++..++....++..++..+.-
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666655443
No 95
>PTZ00014 myosin-A; Provisional
Probab=94.49 E-value=0.092 Score=69.44 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=37.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 000467 789 HKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKRE 830 (1476)
Q Consensus 789 ~~Aa~~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~arr~ 830 (1476)
...++.||++||+|++|+.|++.+.+++.||+.||+++++++
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999999999998865
No 96
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.47 E-value=11 Score=42.90 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=21.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 000467 952 KNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDEN 1002 (1476)
Q Consensus 952 ~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~ 1002 (1476)
++..+...+.++.............++..++.|..++....++...++.++
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444444444444
No 97
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.42 E-value=0.19 Score=59.52 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=74.2
Q ss_pred cccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc-CCCCCccchhHHhhchHHHHHHHhhcC
Q 000467 1263 SHTSQWDNIIKFLDSLMRRLRENHVPSFFIRKLITQVFSFINISLFNSLLLR-RECCTFSNGEYVKSGLAELEKWIVSAK 1341 (1476)
Q Consensus 1263 ~~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~QlF~~Ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~LE~W~~~~~ 1341 (1476)
.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+.-|-.--.++...+..+|.++.+..
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 45567899999999988544 5789999999999999999999999998754 244444445788999999999999871
Q ss_pred c--ccccccHHhhHHHHHHHHHHhccccCccCHHHHHHccCCCCCHHHHHHHHhcCc
Q 000467 1342 E--EFAGTSWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLCPALTVRQIYRICTMYW 1396 (1476)
Q Consensus 1342 l--~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~L~~~Ql~kiL~~Y~ 1396 (1476)
. .-.+.....|..++|.++||....-..--.-.++..-.+.++|..+..||..|+
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 1 124567899999999999999863222211145445678999999999988774
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.34 E-value=5.2 Score=41.49 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000467 879 EISKLQKLLESLNLELDAAKL 899 (1476)
Q Consensus 879 E~~~Lq~~le~l~~el~~~~~ 899 (1476)
+...|+.+++.++.+++....
T Consensus 18 e~dsle~~v~~LEreLe~~q~ 38 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQE 38 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHH
Confidence 455677777777777655443
No 99
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.33 E-value=0.032 Score=56.15 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 100
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.29 E-value=8.3 Score=42.79 Aligned_cols=59 Identities=27% Similarity=0.254 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Q 000467 911 LQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNN 969 (1476)
Q Consensus 911 ~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~ 969 (1476)
+..++....++...+.....+...++++...|+-+.+.+..+...++.+..++......
T Consensus 74 L~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 74 LRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555555666666666666666666666555555544443
No 101
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.28 E-value=7.4 Score=50.87 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 962 KAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 962 e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
++.....+...++...+-++..+.++-.++...+..+++....|-
T Consensus 332 ~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 332 KVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555666666666666666666666555443
No 102
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.28 E-value=11 Score=41.88 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 983 SLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 983 ~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
.|-..+++|.++...|..|+.+-.
T Consensus 161 ~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888877644
No 103
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.23 E-value=12 Score=47.76 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhH
Q 000467 932 MAEIRKENAVLKSSL 946 (1476)
Q Consensus 932 ~~~L~~e~~~Lk~~l 946 (1476)
+..|+.+...++.++
T Consensus 339 v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 339 VSSLEAELNKTRSEL 353 (522)
T ss_pred HhhHHHHHHHHHHHH
Confidence 344444444444443
No 104
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.14 E-value=9.8 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000467 877 SVEISKLQKLLESLNLELDAAKL 899 (1476)
Q Consensus 877 ~~E~~~Lq~~le~l~~el~~~~~ 899 (1476)
..|.++|+.+-+.|..+|.....
T Consensus 98 q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555566666666555554443
No 105
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.10 E-value=26 Score=45.70 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHcccC-CeeEEecC
Q 000467 563 ASRFKQQLQALMETLNSTE-PHYIRCVK 589 (1476)
Q Consensus 563 ~~~f~~~l~~L~~~l~~t~-~h~irCIk 589 (1476)
-.+|+.+...|-+--..|. ..|..|+-
T Consensus 225 RdRf~~qf~rLk~FY~~~S~lqYfk~LI 252 (980)
T KOG0980|consen 225 RDRFHTQFERLKQFYADCSNLQYFKRLI 252 (980)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHh
Confidence 4567777776666555553 35666654
No 106
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.08 E-value=3.9 Score=46.02 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 978 EQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 978 e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
..++.+|++.+..--++.+.|+.|++.|.-+
T Consensus 161 ~sk~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 161 DSKYEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3556667766666666778889999988754
No 107
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.02 E-value=12 Score=47.86 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 000467 973 KLREVEQKCSSLQQNMQSLEEKL 995 (1476)
Q Consensus 973 ~l~~~e~~i~~L~~e~~~lee~l 995 (1476)
+|.++.++.+.+..+...++.++
T Consensus 418 eL~~a~ekld~mgthl~mad~Q~ 440 (1265)
T KOG0976|consen 418 ELQEALEKLDLMGTHLSMADYQL 440 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444443
No 108
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.85 E-value=18 Score=42.76 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHhh
Q 000467 981 CSSLQQNMQSLEEKLSHLEDENHVLRQKA 1009 (1476)
Q Consensus 981 i~~L~~e~~~lee~l~~Le~E~~~Lkqk~ 1009 (1476)
++.|-.|+.-|.+++..++.|...+++.+
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667777777766666543
No 109
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.82 E-value=19 Score=43.11 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000467 939 NAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEE 993 (1476)
Q Consensus 939 ~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee 993 (1476)
...++.++.+...+++..++++.+++.+...+..++.+...++.+++.++..++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555555555444443
No 110
>PRK02224 chromosome segregation protein; Provisional
Probab=93.81 E-value=38 Score=46.47 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=7.3
Q ss_pred eeccccccccch
Q 000467 673 KVFLRAGQIGIL 684 (1476)
Q Consensus 673 kVFlr~~~~~~L 684 (1476)
-||++.|.+..+
T Consensus 132 ~~~i~Qge~~~~ 143 (880)
T PRK02224 132 CAYVRQGEVNKL 143 (880)
T ss_pred eeEeeccChHHH
Confidence 367777766443
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.69 E-value=0.69 Score=51.02 Aligned_cols=64 Identities=31% Similarity=0.321 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 929 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 929 ~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
...+..++.++..|+..+..+...+.+..+....+. .++..|+-++..+++++.+++.||..|-
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~--------------DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ--------------DELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444443333 4444444455555555555555555543
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.62 E-value=7.5 Score=50.03 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 000467 971 IEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 1004 (1476)
Q Consensus 971 ~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~ 1004 (1476)
..+++.++++++.+..++..-++.+.+|+.++..
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444545554444444444444444443
No 113
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.61 E-value=34 Score=45.23 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 000467 932 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNT-------IEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 1004 (1476)
Q Consensus 932 ~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l-------~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~ 1004 (1476)
...+..+...++.++++..+++.+++..+.+.+.+.++. ..++.++..+...|..+-..+...+.++++++..
T Consensus 413 e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 413 ENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554444443333333 3333334444444444444444445555544443
No 114
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=23 Score=50.76 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=5.6
Q ss_pred HHHcCCCHH
Q 000467 317 MDIVGISHE 325 (1476)
Q Consensus 317 l~~lg~~~~ 325 (1476)
...||++.+
T Consensus 140 ~~~lGv~~~ 148 (1311)
T TIGR00606 140 ISHLGVSKA 148 (1311)
T ss_pred HHHhCCCHH
Confidence 446787763
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.50 E-value=10 Score=39.11 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000467 930 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIK----AQKENNNTIEKLREVEQKCSSLQQNMQSLEEKL 995 (1476)
Q Consensus 930 ~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e----~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l 995 (1476)
+.+..++.+...++.++..++...+.....+.. ...+...+.+++.+++.++++|..++.-|-+++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333332 233444555666666666666666665555444
No 116
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.47 E-value=50 Score=46.75 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=19.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 000467 949 LEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHL 998 (1476)
Q Consensus 949 l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~L 998 (1476)
.+.++..++..+.++.....++..++..++..+..+..++..++.++..+
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 444 LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344444444444444444433333
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.46 E-value=21 Score=48.20 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 000467 1272 IKFLDSLMRRLRENHV 1287 (1476)
Q Consensus 1272 l~~L~~~~~~L~~~~v 1287 (1476)
+..|+...++|....+
T Consensus 1023 v~~L~qlr~~l~k~~l 1038 (1317)
T KOG0612|consen 1023 VMELSQLRTKLNKLRL 1038 (1317)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444443333
No 118
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.25 E-value=8.7 Score=44.26 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 959 ELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 959 ~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
.+.+...+...+..+++..+..-..|+++++.|.+-+..++...+.++
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 344444445555556666666666778888888888888887766654
No 119
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.16 E-value=0.063 Score=54.66 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999987764
No 120
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.16 E-value=6.7 Score=50.16 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 933 AEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCS 982 (1476)
Q Consensus 933 ~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~ 982 (1476)
.....|..+++.++++...+.+.++-+++..++|+.-+.-.++..+.++.
T Consensus 490 q~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~ 539 (861)
T PF15254_consen 490 QQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIE 539 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHH
Confidence 34455566666666666666666666666666666655555554444443
No 121
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.13 E-value=21 Score=45.01 Aligned_cols=19 Identities=16% Similarity=-0.164 Sum_probs=10.1
Q ss_pred CCCCcccchhhhHHHHHHH
Q 000467 1134 DENSILPYWLSNASALLCL 1152 (1476)
Q Consensus 1134 ~d~~~layWLSN~~~Ll~~ 1152 (1476)
.+++.--.||.-..+=|.+
T Consensus 313 selE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 313 SELESRNSALEKRIEDLEY 331 (546)
T ss_pred ccccccChhHHHHHHHHHh
Confidence 4555555565555554443
No 122
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.08 E-value=0.093 Score=37.84 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 000467 742 AAAISLQKYVRRWLSRHAF 760 (1476)
Q Consensus 742 ~aai~IQ~~~R~~~~Rk~y 760 (1476)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666655
No 123
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.02 E-value=24 Score=41.88 Aligned_cols=173 Identities=24% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000467 833 RLKQVANEAGALRLAKNKLERQLEDLTWR-----------VQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDAAKLAT 901 (1476)
Q Consensus 833 ~lr~~~~~~~~l~~~~~~le~ki~el~~r-----------l~~ek~l~~~~~eak~~E~~~Lq~~le~l~~el~~~~~~~ 901 (1476)
++......+..+...+..|+.++..+..+ +..+-.-..........+..+++.+++.+..++.+++...
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~ 91 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY 91 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh---------------------------
Q 000467 902 INECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNS--------------------------- 954 (1476)
Q Consensus 902 ~~e~~~~~~~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~--------------------------- 954 (1476)
..+......+..++..+.++ +.+.......++.+...|+.++.-+....+
T Consensus 92 e~e~~~~~~le~el~~lrk~---ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~ 168 (312)
T PF00038_consen 92 EEELAERKDLEEELESLRKD---LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLS 168 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HH
T ss_pred HHHHHHHHHHHHHHhhhhhh---hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccch
Q ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 000467 955 ------------------------------TLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 1004 (1476)
Q Consensus 955 ------------------------------ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~ 1004 (1476)
++................++......++.|+.++..++.+...|+..+..
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Q ss_pred HHHh
Q 000467 1005 LRQK 1008 (1476)
Q Consensus 1005 Lkqk 1008 (1476)
+...
T Consensus 249 le~~ 252 (312)
T PF00038_consen 249 LEQR 252 (312)
T ss_dssp HHHH
T ss_pred HHHH
No 124
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.91 E-value=28 Score=42.30 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 840 EAGALRLAKNKLERQLEDLTWRVQLEK 866 (1476)
Q Consensus 840 ~~~~l~~~~~~le~ki~el~~rl~~ek 866 (1476)
.+..++..+..|++++.+|+.+.....
T Consensus 332 ~IqdLq~sN~yLe~kvkeLQ~k~~kQq 358 (527)
T PF15066_consen 332 RIQDLQCSNLYLEKKVKELQMKITKQQ 358 (527)
T ss_pred HHHHhhhccHHHHHHHHHHHHHhhhhh
Confidence 345566778888999988887776443
No 125
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.89 E-value=30 Score=43.64 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 000467 882 KLQKLLESLNLELDAA 897 (1476)
Q Consensus 882 ~Lq~~le~l~~el~~~ 897 (1476)
+++.++..++.+++++
T Consensus 110 ~~e~ei~kl~~e~~el 125 (546)
T KOG0977|consen 110 KLEIEITKLREELKEL 125 (546)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3333333333333333
No 126
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.86 E-value=0.19 Score=61.63 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 144 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 144 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 344445566667667899999999999999999988776644
No 127
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.85 E-value=0.077 Score=57.44 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=22.5
Q ss_pred HhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 156 ISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 156 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999988888754
No 128
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.80 E-value=22 Score=48.01 Aligned_cols=20 Identities=5% Similarity=-0.018 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHHHhHHH
Q 000467 1288 PSFFIRKLITQVFSFINISL 1307 (1476)
Q Consensus 1288 ~~~l~~Q~f~QlF~~Ina~l 1307 (1476)
...++++..++|-.-+|.-.
T Consensus 980 e~~v~~aa~~kl~eif~r~~ 999 (1317)
T KOG0612|consen 980 ERDVKHAAVNKLAEIFNRKT 999 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555666655555444
No 129
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.76 E-value=0.078 Score=53.60 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=21.0
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999996
No 130
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=34 Score=42.89 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=12.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHH
Q 000467 805 RSAFQHHQTSIIAIQCRWRQKLAK 828 (1476)
Q Consensus 805 R~~y~~~~~a~i~iQ~~~R~~~ar 828 (1476)
|+.+..++.-+...|+++-++..+
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444445555555555555544443
No 131
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.74 E-value=11 Score=44.08 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 931 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSL 984 (1476)
Q Consensus 931 ~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L 984 (1476)
++..|..+...++..+..+-.+.+++...+...+..-..+..++.++++++.+.
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333333444444444444333
No 132
>PRK01156 chromosome segregation protein; Provisional
Probab=92.70 E-value=30 Score=47.51 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000467 928 ELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNN-----------TIEKLREVEQKCSSLQQNMQSLEEKLS 996 (1476)
Q Consensus 928 ~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~-----------l~~~l~~~e~~i~~L~~e~~~lee~l~ 996 (1476)
.......+..+...+...++.+...+..+..++..+..+... ....+.+...++..+..+...+..++.
T Consensus 354 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~ 433 (895)
T PRK01156 354 QILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIR 433 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555555444444444333222 222334455555666666666666666
Q ss_pred hHHHHHHHHH
Q 000467 997 HLEDENHVLR 1006 (1476)
Q Consensus 997 ~Le~E~~~Lk 1006 (1476)
.++.+...|+
T Consensus 434 ~l~~~~~el~ 443 (895)
T PRK01156 434 ALRENLDELS 443 (895)
T ss_pred HHHHHHHHHH
Confidence 6666555555
No 133
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.68 E-value=64 Score=45.84 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=9.6
Q ss_pred cCCHH-HHHHHHHHhh
Q 000467 1404 SVSNE-VVAQMREILN 1418 (1476)
Q Consensus 1404 ~v~~~-~i~~v~~~~~ 1418 (1476)
.||++ ++..|+..+.
T Consensus 1066 ~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1066 ELPSEEYVNALRELLD 1081 (1201)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 57777 7777765543
No 134
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.66 E-value=8.5 Score=49.79 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=6.6
Q ss_pred cccceeccccc
Q 000467 669 LGRTKVFLRAG 679 (1476)
Q Consensus 669 iGkTkVFlr~~ 679 (1476)
.|.|...|..+
T Consensus 59 ~Ges~~~f~~w 69 (569)
T PRK04778 59 TGQSEEKFEEW 69 (569)
T ss_pred CcccHHHHHHH
Confidence 56666666543
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.59 E-value=20 Score=39.82 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHH
Q 000467 935 IRKENAVLKSSLDSLEKKNSTLELE 959 (1476)
Q Consensus 935 L~~e~~~Lk~~l~~l~~~i~ele~~ 959 (1476)
+.-+.+.|+..+..+..+.+++...
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344343433343333333
No 136
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.57 E-value=10 Score=48.86 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhhhc
Q 000467 975 REVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 1011 (1476)
Q Consensus 975 ~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~~~ 1011 (1476)
...-++++.++.++..+++++...++..+.|..+..+
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666666666666666666666666665544
No 137
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.54 E-value=23 Score=44.34 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=7.4
Q ss_pred HHHHHHHhhhhh
Q 000467 631 SDFVDRFGLLAL 642 (1476)
Q Consensus 631 ~~F~~ry~~l~~ 642 (1476)
.+|..-|..|..
T Consensus 103 KdF~~iFkfLY~ 114 (581)
T KOG0995|consen 103 KDFIAIFKFLYG 114 (581)
T ss_pred ccHHHHHHHHHh
Confidence 377776666653
No 138
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.53 E-value=38 Score=42.90 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 000467 832 RRLKQVANEAG 842 (1476)
Q Consensus 832 ~~lr~~~~~~~ 842 (1476)
++||...++..
T Consensus 477 kKLRAk~ke~e 487 (961)
T KOG4673|consen 477 KKLRAKIKEAE 487 (961)
T ss_pred HHHHHHhhhhh
Confidence 34444333333
No 139
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.51 E-value=0.11 Score=47.11 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.43 E-value=1.9 Score=51.13 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=7.0
Q ss_pred cHHHHHHHHHHHH
Q 000467 1267 QWDNIIKFLDSLM 1279 (1476)
Q Consensus 1267 ~~~~il~~L~~~~ 1279 (1476)
.|..-+++|-.-+
T Consensus 289 ~WT~AlK~lLtnl 301 (314)
T PF04111_consen 289 EWTKALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6766555554433
No 141
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.37 E-value=0.098 Score=56.72 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
+.|+|+|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877653
No 142
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.35 E-value=0.14 Score=59.40 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999987765
No 143
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=29 Score=42.76 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000467 968 NNTIEKLREVEQKCSSLQQN 987 (1476)
Q Consensus 968 ~~l~~~l~~~e~~i~~L~~e 987 (1476)
+.+..+++.++++..-|...
T Consensus 197 EglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 197 EGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 144
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.21 E-value=0.18 Score=51.57 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.5
Q ss_pred cCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 158 EHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 158 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998885
No 145
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.18 E-value=15 Score=42.87 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 000467 997 HLEDENHVLR 1006 (1476)
Q Consensus 997 ~Le~E~~~Lk 1006 (1476)
+.+.|++.++
T Consensus 294 EaQEElk~lR 303 (306)
T PF04849_consen 294 EAQEELKTLR 303 (306)
T ss_pred HHHHHHHHhh
Confidence 3444444443
No 146
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.13 E-value=20 Score=38.86 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000467 878 VEISKLQKLLESLNLELDAAKL 899 (1476)
Q Consensus 878 ~E~~~Lq~~le~l~~el~~~~~ 899 (1476)
.|+..+..++++-..+|..++.
T Consensus 49 ien~~l~~kIeERn~eL~~Lk~ 70 (177)
T PF13870_consen 49 IENQQLNEKIEERNKELLKLKK 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566555555555443
No 147
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.05 E-value=57 Score=43.82 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=24.7
Q ss_pred eeEEecCCCCCCCCCCCChhH-HH----HHhhccChhhHHHHHhhcCCcccchH
Q 000467 583 HYIRCVKPNSLNRPQKFENPS-IL----HQLRCGGVLEAVRISLAGYPTRRTYS 631 (1476)
Q Consensus 583 h~irCIkpN~~~~p~~fd~~~-v~----~QLr~~gvle~iri~~~gyp~r~~~~ 631 (1476)
||---|=||-..+++..|.-. |+ .+||...+=+.|- |||.+.+-.
T Consensus 26 ~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy----g~~i~~~v~ 75 (1141)
T KOG0018|consen 26 RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY----GKPIRKPVT 75 (1141)
T ss_pred hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc----CCccCCchh
Confidence 344446677776666666532 22 4555555444433 777776554
No 148
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.05 E-value=0.095 Score=60.86 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678889999999999999999999985
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.04 E-value=6.9 Score=42.96 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhH
Q 000467 977 VEQKCSSLQQNMQSLEEKLSHL 998 (1476)
Q Consensus 977 ~e~~i~~L~~e~~~lee~l~~L 998 (1476)
.+....+++.+...+++.+.++
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333
No 150
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.99 E-value=79 Score=45.37 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 000467 930 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 1004 (1476)
Q Consensus 930 ~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~ 1004 (1476)
.....|..++..|+.++...+..++++...+..++ .....++++....++.+..++.+++.....|+.....
T Consensus 1307 ~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e 1378 (1822)
T KOG4674|consen 1307 NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSE 1378 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666665555 2334455555555556666665555554444444333
No 151
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.99 E-value=6.6 Score=43.10 Aligned_cols=10 Identities=40% Similarity=0.511 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000467 885 KLLESLNLEL 894 (1476)
Q Consensus 885 ~~le~l~~el 894 (1476)
..+..+..++
T Consensus 88 ~~l~~l~~el 97 (191)
T PF04156_consen 88 QQLQQLQEEL 97 (191)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 152
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.98 E-value=9.3 Score=43.82 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000467 883 LQKLLESLNLELDAAKL 899 (1476)
Q Consensus 883 Lq~~le~l~~el~~~~~ 899 (1476)
|..++..++.+...+..
T Consensus 10 le~rL~q~eee~~~a~~ 26 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQE 26 (246)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444333333
No 153
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.82 E-value=0.25 Score=50.86 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
..+..|+++|++|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999998887
No 154
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.77 E-value=28 Score=45.62 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=5.8
Q ss_pred cchhhhHHHHH
Q 000467 1140 PYWLSNASALL 1150 (1476)
Q Consensus 1140 ayWLSN~~~Ll 1150 (1476)
.-|.+-...|-
T Consensus 394 ~~~~~e~q~L~ 404 (717)
T PF09730_consen 394 DRLESEVQNLK 404 (717)
T ss_pred HHHHHHHHHHH
Confidence 45655555543
No 155
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.63 E-value=1.7 Score=48.02 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000467 935 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEE 993 (1476)
Q Consensus 935 L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee 993 (1476)
++++++.++++.+.+++++++.+++++.+++....+.++.++...+++.|.++...+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555545444444444444444444433
No 156
>PRK06696 uridine kinase; Validated
Probab=91.58 E-value=0.24 Score=55.93 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 146 AVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 146 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+|+..+.. ..+..--|.|+|.||||||+.|+.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555432 3556778999999999999999999999853
No 157
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.57 E-value=10 Score=38.42 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000467 962 KAQKENNNTIEKLREVEQKCSSLQQNMQSLEE 993 (1476)
Q Consensus 962 e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee 993 (1476)
+++.+++.+..-+-+..++..+|+.++..+++
T Consensus 79 ~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 79 ELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333333333333444444445544444443
No 158
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.54 E-value=12 Score=45.75 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 934 EIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 934 ~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
...+++.+|..++..+.+++..+.-+.+++..-.......-+.++.+..++++...+.++...+-++|++.|+
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444444333333332222222222223333333344444444444445555555554
No 159
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.46 E-value=0.13 Score=55.21 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999999776
No 160
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.45 E-value=0.17 Score=56.45 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 161
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.42 E-value=0.16 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~ 182 (1476)
+..+.+.|.|+||||||+.++.++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 346789999999999999999976
No 162
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.41 E-value=14 Score=43.48 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhH
Q 000467 935 IRKENAVLKSSLDSLEKKNSTL 956 (1476)
Q Consensus 935 L~~e~~~Lk~~l~~l~~~i~el 956 (1476)
++.+...++++++..++++.++
T Consensus 75 l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 163
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.39 E-value=57 Score=44.84 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHH
Q 000467 143 HVFAVADASYRAMISEHQSQSILVSGESGAGKTETT 178 (1476)
Q Consensus 143 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 178 (1476)
.||..+-.-.-.-.-.|-|=||+--|.+|||||.|.
T Consensus 148 dVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 148 DIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 566654332222234788999999999999999874
No 164
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.36 E-value=24 Score=38.20 Aligned_cols=70 Identities=30% Similarity=0.421 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHhHH
Q 000467 930 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREV-------EQKCSSLQQNMQSLEEKLSHLE 999 (1476)
Q Consensus 930 ~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~-------e~~i~~L~~e~~~lee~l~~Le 999 (1476)
..+.+|..+...+...+..+...-+.+.......+.+...+..+|++. +...+.|+.+..++++++....
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 344445555444444444444444444443333333333333344333 3334444444444444443333
No 165
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.34 E-value=0.16 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
.+..|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3688999999999999999777764
No 166
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.24 E-value=29 Score=38.83 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 000467 953 NSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQ 1007 (1476)
Q Consensus 953 i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkq 1007 (1476)
.+++++...++..-..++.++.+..+..+--|++++...++++..+++.+..+.+
T Consensus 252 seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 252 SEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555666666666666666666666665554
No 167
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.19 E-value=0.15 Score=56.61 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57789999999999999999998876
No 168
>PRK01156 chromosome segregation protein; Provisional
Probab=91.10 E-value=78 Score=43.55 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhcCCCH
Q 000467 1270 NIIKFLDSLMRRLRENHVPS 1289 (1476)
Q Consensus 1270 ~il~~L~~~~~~L~~~~v~~ 1289 (1476)
..+..|+.+...|...+++.
T Consensus 733 ~~~~~l~~~r~~l~k~~~~~ 752 (895)
T PRK01156 733 KAIGDLKRLREAFDKSGVPA 752 (895)
T ss_pred HHHHHHHHHHHHhhhccchH
Confidence 34555556666666666655
No 169
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.06 E-value=0.15 Score=56.20 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=23.2
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
|-|+|.||||||+.|+.+-..|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 170
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.06 E-value=21 Score=42.06 Aligned_cols=47 Identities=23% Similarity=0.397 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhhhc
Q 000467 965 KENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 1011 (1476)
Q Consensus 965 ~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~~~ 1011 (1476)
.+.+++..+++.++.++..|+.++..+-++..++..|-...+.++.+
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999999999988888888888888877654
No 171
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.04 E-value=0.16 Score=56.23 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 172
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.03 E-value=0.24 Score=52.42 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998654
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.03 E-value=0.15 Score=51.63 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=21.7
Q ss_pred EEEcCCCCCchhHHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla 186 (1476)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999985
No 174
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.98 E-value=0.16 Score=56.06 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998887
No 175
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.92 E-value=60 Score=41.91 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000467 880 ISKLQKLLESLNLELDAA 897 (1476)
Q Consensus 880 ~~~Lq~~le~l~~el~~~ 897 (1476)
..++..+..+++..|.+.
T Consensus 325 nmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555544444433
No 176
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.80 E-value=0.37 Score=54.62 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=29.3
Q ss_pred hcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhcC
Q 000467 157 SEHQSQSILVSGESGAGKTETTKLIMQYLTFVGG 190 (1476)
Q Consensus 157 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 190 (1476)
..++..-|.|+|.||||||+.++.+...|..-++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3477889999999999999999999999976554
No 177
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.79 E-value=62 Score=41.88 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhhhc
Q 000467 965 KENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 1011 (1476)
Q Consensus 965 ~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~~~ 1011 (1476)
+......++..+....++.|..+-.+..+++.+++..+...+..+.+
T Consensus 386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555555555566666666666666655544
No 178
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.72 E-value=0.26 Score=58.46 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=31.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 138 GELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 138 ~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
+.++|..- ...+.+...+. .|||+|..|||||+..+.++.++..
T Consensus 127 g~~~~~~~----~~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 127 KIMTEAQA----SVIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred CCCCHHHH----HHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34555433 23445555555 5999999999999999999998853
No 179
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.71 E-value=39 Score=39.38 Aligned_cols=76 Identities=25% Similarity=0.290 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHhHHH
Q 000467 932 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQK-----------CSSLQQNMQSLEEKLSHLED 1000 (1476)
Q Consensus 932 ~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~-----------i~~L~~e~~~lee~l~~Le~ 1000 (1476)
+..+++|+..|+.+++++..+..|.+.+-+.+.+|..+...-..++..+ ++.-+.-+..||.++.+|--
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~ 215 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMY 215 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666665555555554444444443333332222222111 22233334555556666666
Q ss_pred HHHHHHH
Q 000467 1001 ENHVLRQ 1007 (1476)
Q Consensus 1001 E~~~Lkq 1007 (1476)
|...|-|
T Consensus 216 EirnLLQ 222 (401)
T PF06785_consen 216 EIRNLLQ 222 (401)
T ss_pred HHHHHHH
Confidence 6665443
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.68 E-value=7.4 Score=43.96 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Q 000467 932 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENN 968 (1476)
Q Consensus 932 ~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~ 968 (1476)
.+.|..|.....+++.....++..++..+..++.+..
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555544444444443
No 181
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.67 E-value=9 Score=43.30 Aligned_cols=72 Identities=25% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 930 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 930 ~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
.-+.++.++...|..+..... +++......+..+...++.++.+....++...++.+++..|+.+...++.+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~-------eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHV-------EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333 333333344444444455555555555555555556666666666666554
No 182
>PTZ00301 uridine kinase; Provisional
Probab=90.59 E-value=0.19 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEcCCCCCchhHHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla 186 (1476)
|-|+|.||||||+.|+.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999998887764
No 183
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.55 E-value=45 Score=39.87 Aligned_cols=11 Identities=36% Similarity=0.030 Sum_probs=6.9
Q ss_pred HHHHHHHHHhH
Q 000467 789 HKAATVIQACW 799 (1476)
Q Consensus 789 ~~Aa~~IQ~~~ 799 (1476)
..|.+.||..+
T Consensus 84 ~~Asv~IQara 94 (552)
T KOG2129|consen 84 LLASVEIQARA 94 (552)
T ss_pred hhhhhHHhhcc
Confidence 35677777643
No 184
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.54 E-value=44 Score=39.74 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=6.9
Q ss_pred HHHhHHHHHHHHHH
Q 000467 994 KLSHLEDENHVLRQ 1007 (1476)
Q Consensus 994 ~l~~Le~E~~~Lkq 1007 (1476)
++..|+...+.|+.
T Consensus 272 Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 272 EIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 185
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.53 E-value=0.29 Score=56.76 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=26.7
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444322 336999999999999999999998853
No 186
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.49 E-value=0.23 Score=55.36 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.+...|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567788999999999999999887764
No 187
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.44 E-value=2 Score=47.48 Aligned_cols=53 Identities=28% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 929 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKC 981 (1476)
Q Consensus 929 ~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i 981 (1476)
...+..|+.++..++.++.+..+.++.+..++..+.-+...+.+++..++.+.
T Consensus 122 ~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 122 EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777766665544444444333333
No 188
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.30 E-value=43 Score=41.35 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 000467 988 MQSLEEKLSHLEDENHVLRQ 1007 (1476)
Q Consensus 988 ~~~lee~l~~Le~E~~~Lkq 1007 (1476)
...++.++..++.++..++.
T Consensus 248 l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 189
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.27 E-value=41 Score=41.58 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHH
Q 000467 978 EQKCSSLQQNMQSLEEKLSHLEDEN 1002 (1476)
Q Consensus 978 e~~i~~L~~e~~~lee~l~~Le~E~ 1002 (1476)
..++..++.++..++.++..++..+
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544443
No 190
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.26 E-value=0.22 Score=53.88 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999998863
No 191
>PRK08233 hypothetical protein; Provisional
Probab=90.24 E-value=0.18 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998874
No 192
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.23 E-value=41 Score=40.88 Aligned_cols=33 Identities=12% Similarity=-0.099 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHhhhcCCCCCccchHHHHHHHHh
Q 000467 1074 QENLEFLSRCIKENLGFNNGKPVAACIIYKSLV 1106 (1476)
Q Consensus 1074 ~E~~d~l~~~l~~~~~~~~~~p~~A~ilf~cl~ 1106 (1476)
..+..-++.-+...+++...+++.|.-.|...+
T Consensus 489 i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~k 521 (622)
T COG5185 489 IKNLKHDINELTQILEKLELELSEANSKFELSK 521 (622)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556655556666666665544
No 193
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.11 E-value=3.3 Score=45.93 Aligned_cols=35 Identities=6% Similarity=0.124 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 974 LREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 974 l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
+.++++++++|++++..++.++..++.++..++.+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555443
No 194
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.03 E-value=4.2 Score=50.76 Aligned_cols=76 Identities=22% Similarity=0.405 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 931 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNN---TIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 931 ~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~---l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
.++.++.+|..|+..+++++..++.|+.++..+.++... ...++...+.++..|+.++.+-...+..|+..+..++
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554433321 2234445555566666666555555566665555544
No 195
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.94 E-value=0.24 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999864
No 196
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.93 E-value=91 Score=42.43 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=8.5
Q ss_pred HHHhHHHHhhcCCCccc
Q 000467 478 FKMEQEEYRREEINWSY 494 (1476)
Q Consensus 478 f~~eq~~y~~Egi~~~~ 494 (1476)
|+.-+.....+||+.++
T Consensus 208 ~~~V~~lLk~~gIDleH 224 (1293)
T KOG0996|consen 208 FKDVTKLLKSHGIDLEH 224 (1293)
T ss_pred HHHHHHHHHhcCCCCcc
Confidence 44444555555555443
No 197
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.90 E-value=0.44 Score=53.62 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 150 ASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 150 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999988753
No 198
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.88 E-value=67 Score=40.86 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 935 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCS 982 (1476)
Q Consensus 935 L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~ 982 (1476)
|+.|+..|.+.+++...+..+.+++...++.+.+.+..+...++.++.
T Consensus 709 lraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r 756 (961)
T KOG4673|consen 709 LRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIR 756 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444444444444444444444444433333
No 199
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.86 E-value=0.23 Score=55.92 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEcCCCCCchhHHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla 186 (1476)
|-|+|.||||||+.++.|...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999998875
No 200
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.86 E-value=33 Score=41.62 Aligned_cols=10 Identities=40% Similarity=0.228 Sum_probs=4.6
Q ss_pred cHHHHHHHHH
Q 000467 561 SVASRFKQQL 570 (1476)
Q Consensus 561 tv~~~f~~~l 570 (1476)
++..-|+.|+
T Consensus 79 ~~s~~~i~q~ 88 (622)
T COG5185 79 SVSRLSINQL 88 (622)
T ss_pred hhhHHHHHhh
Confidence 3444455444
No 201
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.85 E-value=15 Score=44.99 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 934 EIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 934 ~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
...+++....++...+...+.+++++...+.-+++.+..-|....+.-..++.|..+++++..+...+.+.-.
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAE 295 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445444444444444444444444444444444444445444444444444333
No 202
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.83 E-value=0.22 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.9
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yl 185 (1476)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.76 E-value=0.22 Score=50.26 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998887654
No 204
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.73 E-value=0.42 Score=57.31 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=35.8
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 129 MEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 129 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.++|+-..+.++-.|--.+ .........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVV--ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHH--HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456655444443332222 1223333445545799999999999999999999885
No 205
>PRK07261 topology modulation protein; Provisional
Probab=89.71 E-value=0.24 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yl 185 (1476)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999987654
No 206
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=89.69 E-value=4.2 Score=51.66 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=87.2
Q ss_pred cccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCCCCccchhHHhhchHHHHHHHhhcCc
Q 000467 1263 SHTSQWDNIIKFLDSLMRRLRENHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVSAKE 1342 (1476)
Q Consensus 1263 ~~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~QlF~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~l 1342 (1476)
..+++....+..|...+..|+.. +++.....+..++..-|+..++++++.+. -.|..-|.|+.+=+..|-..+..
T Consensus 352 ~~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~--- 426 (494)
T PF04437_consen 352 SPSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ--- 426 (494)
T ss_dssp ---GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh---
Confidence 34567788999999999999999 99999999999999999999999999886 46666777777766554444443
Q ss_pred ccccccHHhhHHHHHHHHHHhccccCccCH--------------HHHHHcc-CCCCCHHHHHHHHh
Q 000467 1343 EFAGTSWHELNYIRQAVGFLVIHQKRKKSL--------------DEIRQDL-CPALTVRQIYRICT 1393 (1476)
Q Consensus 1343 ~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~L~~~Ql~kiL~ 1393 (1476)
+....-.++..|.+++.||-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 -~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 -YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred -hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44445589999999999999986544322 1232222 25788888888875
No 207
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.67 E-value=0.26 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.66 E-value=33 Score=45.48 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=14.7
Q ss_pred ccCCeeEEecCCCCCCCCCC
Q 000467 579 STEPHYIRCVKPNSLNRPQK 598 (1476)
Q Consensus 579 ~t~~h~irCIkpN~~~~p~~ 598 (1476)
.|..+||.|-+|.....|..
T Consensus 422 ~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 422 PCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CcceEEEeccCCCCCCCCCC
Confidence 35579999999977655544
No 209
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.63 E-value=77 Score=41.16 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 000467 849 NKLERQLEDLT 859 (1476)
Q Consensus 849 ~~le~ki~el~ 859 (1476)
..+..++.++.
T Consensus 226 ~~~P~ql~el~ 236 (569)
T PRK04778 226 TELPDQLQELK 236 (569)
T ss_pred HHhhHHHHHHH
Confidence 33444444443
No 210
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.54 E-value=0.22 Score=55.94 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=15.9
Q ss_pred EEEEcCCCCCchhHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLI 181 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~ 181 (1476)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999976543
No 211
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.52 E-value=5.3 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=8.3
Q ss_pred HHHhHHHHHHHHHhHHHHHHHH
Q 000467 984 LQQNMQSLEEKLSHLEDENHVL 1005 (1476)
Q Consensus 984 L~~e~~~lee~l~~Le~E~~~L 1005 (1476)
++++...++.++.....++..|
T Consensus 111 ~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 111 FQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 212
>PRK06547 hypothetical protein; Provisional
Probab=89.52 E-value=0.5 Score=51.08 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.4
Q ss_pred cCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 158 EHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 158 ~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+...-|+|+|.||||||+.++.+.+-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5677889999999999999999988764
No 213
>PRK06762 hypothetical protein; Provisional
Probab=89.48 E-value=0.31 Score=52.11 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999888
No 214
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.47 E-value=21 Score=47.30 Aligned_cols=18 Identities=11% Similarity=0.462 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000467 880 ISKLQKLLESLNLELDAA 897 (1476)
Q Consensus 880 ~~~Lq~~le~l~~el~~~ 897 (1476)
+..|...++.+.++++..
T Consensus 204 l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 204 LNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666555444
No 215
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.34 E-value=0.42 Score=56.89 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=35.7
Q ss_pred HHHhhCCCCCCC--ChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 129 MEQYKGAPFGEL--SPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 129 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.++|+-+.+.++ ++|+-+ ........ +-+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 346776666665 344432 33333333 346778889999999999999998876
No 216
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.30 E-value=20 Score=42.17 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=5.3
Q ss_pred HHHHHHhHHHHHHHh
Q 000467 939 NAVLKSSLDSLEKKN 953 (1476)
Q Consensus 939 ~~~Lk~~l~~l~~~i 953 (1476)
+...++.+++++..+
T Consensus 86 i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 86 IEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 217
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.28 E-value=0.31 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887664
No 218
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.13 E-value=62 Score=39.37 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=6.8
Q ss_pred HHHhHHHHHHHHHH
Q 000467 994 KLSHLEDENHVLRQ 1007 (1476)
Q Consensus 994 ~l~~Le~E~~~Lkq 1007 (1476)
.+..+.++|..|..
T Consensus 503 Dyqairqen~~L~~ 516 (521)
T KOG1937|consen 503 DYQAIRQENDQLFS 516 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555543
No 219
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.13 E-value=5.2 Score=44.43 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000467 883 LQKLLESLNL 892 (1476)
Q Consensus 883 Lq~~le~l~~ 892 (1476)
++.++++++.
T Consensus 98 le~el~~l~~ 107 (206)
T PRK10884 98 LENQVKTLTD 107 (206)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 220
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.09 E-value=76 Score=40.35 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=6.0
Q ss_pred HhHHHHHHHHH
Q 000467 996 SHLEDENHVLR 1006 (1476)
Q Consensus 996 ~~Le~E~~~Lk 1006 (1476)
.+++.|+..|+
T Consensus 347 eeIK~ELsiLk 357 (629)
T KOG0963|consen 347 EEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHH
Confidence 34555555555
No 221
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.07 E-value=79 Score=40.54 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=5.4
Q ss_pred HHhHHHHHHHHHH
Q 000467 995 LSHLEDENHVLRQ 1007 (1476)
Q Consensus 995 l~~Le~E~~~Lkq 1007 (1476)
+..|+.++..++.
T Consensus 339 v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 339 VSSLEAELNKTRS 351 (522)
T ss_pred HhhHHHHHHHHHH
Confidence 3344444444443
No 222
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.06 E-value=0.27 Score=53.91 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+.--|||+|.||||||+.++.+++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34569999999999999999998765
No 223
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.99 E-value=77 Score=40.30 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000467 925 LERELVAMAEIRKENAVLKSSLDSLEK 951 (1476)
Q Consensus 925 l~e~~~~~~~L~~e~~~Lk~~l~~l~~ 951 (1476)
++.+..++..++.++..|+.++...+.
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344556677777777777776654443
No 224
>PRK08118 topology modulation protein; Reviewed
Probab=88.98 E-value=0.32 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999988763
No 225
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.93 E-value=17 Score=41.13 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 936 RKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 936 ~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
..+...|+.+...+.+..+.+++....+.-+..-....+.-++-++...+..++.|+.+++.++.|+....
T Consensus 59 k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 59 KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333333222233333444444444455555555555555554443
No 226
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.89 E-value=0.35 Score=51.77 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+..|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998887
No 227
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.83 E-value=20 Score=36.30 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000467 881 SKLQKLLESLNLELDAAK 898 (1476)
Q Consensus 881 ~~Lq~~le~l~~el~~~~ 898 (1476)
++|+..+..++.++..++
T Consensus 19 e~L~s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQ 36 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 228
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.82 E-value=0.59 Score=55.16 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 139 ELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 139 ~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.++|-..+. .+.+... ...|+|+|..|||||+..+.+++++..
T Consensus 116 ~~~~~~~~~----L~~~v~~--~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 116 IMTAAQRDV----LREAVLA--RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCHHHHHH----HHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 455544433 3333333 357999999999999999999999864
No 229
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=88 Score=40.79 Aligned_cols=74 Identities=26% Similarity=0.289 Sum_probs=47.8
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhhhc
Q 000467 938 ENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 1011 (1476)
Q Consensus 938 e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~~~ 1011 (1476)
+...+..-++.......+....+..++.+.++..+++++.+..+..+..++.....+...+++|+..|+.++..
T Consensus 546 el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 546 ELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444555555555555666666666777777777777777777777778888888888877644
No 230
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.78 E-value=13 Score=44.88 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=6.4
Q ss_pred CCCCCCChhHH
Q 000467 594 NRPQKFENPSI 604 (1476)
Q Consensus 594 ~~p~~fd~~~v 604 (1476)
..|..||.+..
T Consensus 61 ~~p~e~DDPn~ 71 (359)
T PF10498_consen 61 EQPQEYDDPNA 71 (359)
T ss_pred CCCcccCCHHH
Confidence 34666776554
No 231
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.77 E-value=0.7 Score=56.23 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=40.1
Q ss_pred HHHhhCCCCCCCC--hhHHHHHHHHHHHHHh-cCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 129 MEQYKGAPFGELS--PHVFAVADASYRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 129 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.++|+-..+.++- +|+-.. .+++.. .+-+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4677777766664 554443 344444 45689999999999999999999999885
No 232
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.75 E-value=0.37 Score=52.03 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.8
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla 186 (1476)
++++.|.||.|||+.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999997
No 233
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.74 E-value=0.29 Score=56.37 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=16.0
Q ss_pred eEEEEcCCCCCchhHHHHH
Q 000467 162 QSILVSGESGAGKTETTKL 180 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~ 180 (1476)
+-|||||-||||||++.+.
T Consensus 2 ~~vIiTGlSGaGKs~Al~~ 20 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRA 20 (284)
T ss_pred eEEEEeCCCcCCHHHHHHH
Confidence 4689999999999987554
No 234
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.71 E-value=0.29 Score=53.55 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887765
No 235
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.69 E-value=0.3 Score=53.48 Aligned_cols=43 Identities=28% Similarity=0.495 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 138 GELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 138 ~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
+.++|-+.+.-..+ .+. ...|+|+|++|||||++.+.++.++-
T Consensus 8 g~~~~~~~~~l~~~----v~~--g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 8 GTFSPLQAAYLWLA----VEA--RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCHHHHHHHHHH----HhC--CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44566554443332 333 56899999999999999999888763
No 236
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.57 E-value=0.27 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+.|+|+|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999998886544
No 237
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.56 E-value=0.27 Score=50.98 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998876
No 238
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.56 E-value=62 Score=39.07 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000467 877 SVEISKLQKLLESLNLELD 895 (1476)
Q Consensus 877 ~~E~~~Lq~~le~l~~el~ 895 (1476)
.+|...|......|+.+..
T Consensus 249 kqEnlqLvhR~h~LEEq~r 267 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRR 267 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666665555554443
No 239
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.54 E-value=0.48 Score=51.16 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
+...|+|.|.+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999643
No 240
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=73 Score=41.50 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=8.3
Q ss_pred HHHHHHcCCCHHHHHHHHh
Q 000467 366 QMAADLFMCDVNLLLATLC 384 (1476)
Q Consensus 366 ~~~a~LLgv~~~~l~~~l~ 384 (1476)
+.+..||.+-+.++.+++.
T Consensus 144 qLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 144 QLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 3344444444444444443
No 241
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.41 E-value=23 Score=42.92 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=6.7
Q ss_pred ccccChHHHHHHhh
Q 000467 495 IEFIDNQDVLDLIE 508 (1476)
Q Consensus 495 i~f~dn~~~ldlie 508 (1476)
|.|.|+.+.....+
T Consensus 120 IkFr~q~da~~Fy~ 133 (493)
T KOG0804|consen 120 IKFRDQADADTFYE 133 (493)
T ss_pred EEeccchhHHHHHH
Confidence 44555544444444
No 242
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.39 E-value=0.7 Score=52.62 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 148 ADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 148 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|-.+.+++.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4445555555556679999999999999999988887764
No 243
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.22 E-value=1.1e+02 Score=40.99 Aligned_cols=76 Identities=28% Similarity=0.342 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 931 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 931 ~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
.......++..++..++.+..++.+.+..+..++.+...+.......+.++..|.-+++...+++.+++.++..++
T Consensus 466 ele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 466 ELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555554444444556666777777777777777776666543
No 244
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.16 E-value=0.38 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999988888764
No 245
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.13 E-value=0.37 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.4
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
|.|.|++|.|||..++.+.++|...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 246
>PTZ00121 MAEBL; Provisional
Probab=88.09 E-value=1.3e+02 Score=41.85 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=25.5
Q ss_pred CccccCCCCCchhHHHHHHHHhhcCCcccccCc
Q 000467 77 DDMTKLTYLNEPGVLYNLERRYALNDIYTYTGS 109 (1476)
Q Consensus 77 ~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~ 109 (1476)
=|||.=..+++..|+.....|......|||-|.
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 388887778887777777777777788998774
No 247
>PF13245 AAA_19: Part of AAA domain
Probab=88.05 E-value=0.62 Score=43.12 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4666778999999999888888888874
No 248
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.02 E-value=19 Score=41.27 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhHHHH
Q 000467 975 REVEQKCSSLQQNMQSL 991 (1476)
Q Consensus 975 ~~~e~~i~~L~~e~~~l 991 (1476)
.+.+..+..|..+....
T Consensus 85 ~e~~~~i~~l~ee~~~k 101 (246)
T PF00769_consen 85 REAEAEIARLEEESERK 101 (246)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 249
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.01 E-value=56 Score=37.56 Aligned_cols=17 Identities=41% Similarity=0.468 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000467 879 EISKLQKLLESLNLELD 895 (1476)
Q Consensus 879 E~~~Lq~~le~l~~el~ 895 (1476)
++++|+.+++.++..+.
T Consensus 81 eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 81 EIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 250
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.98 E-value=0.38 Score=53.39 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=21.9
Q ss_pred CeEEE--EcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSIL--VSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIi--isGeSGaGKTe~~k~~~~yla 186 (1476)
.++|| |+|-||||||+-|+.+..-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 45555 599999999999999998886
No 251
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=87.98 E-value=2.7 Score=51.82 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 145 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 145 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
|...-.|...+..-.+.|.+.|.|.||+|||+..+.+++..
T Consensus 141 l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 141 FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33344577777778899999999999999999999888765
No 252
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=25 Score=44.28 Aligned_cols=7 Identities=43% Similarity=0.354 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 000467 1078 EFLSRCI 1084 (1476)
Q Consensus 1078 d~l~~~l 1084 (1476)
+.+.+++
T Consensus 636 ~~i~rii 642 (652)
T COG2433 636 EDILRII 642 (652)
T ss_pred HHHHHHH
Confidence 3344333
No 253
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=87.97 E-value=0.77 Score=53.75 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
+.+--|-|+|.||||||++++.+...|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45677889999999999999988777753
No 254
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.95 E-value=0.3 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEcCCCCCchhHHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla 186 (1476)
|++.|.||||||+.++.+-+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68899999999999999998874
No 255
>PF05729 NACHT: NACHT domain
Probab=87.94 E-value=0.42 Score=50.42 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.1
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
-++|+|+.|+|||+.++.++..++.-
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 47999999999999999999888754
No 256
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.92 E-value=62 Score=40.23 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000467 875 AKSVEISKLQKLLESLNLELDAA 897 (1476)
Q Consensus 875 ak~~E~~~Lq~~le~l~~el~~~ 897 (1476)
.-..|.+.|..++..++.++.+.
T Consensus 335 ~~~ke~kdLkEkv~~lq~~l~ek 357 (654)
T KOG4809|consen 335 SFRKENKDLKEKVNALQAELTEK 357 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555544443
No 257
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.85 E-value=0.29 Score=57.99 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
..-++-+-||||||||.|+..||+-|..-
T Consensus 35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 35 AGETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 34578888999999999999999999864
No 258
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.84 E-value=79 Score=42.30 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHH-HHHhcCCCHHHHHH
Q 000467 1267 QWDNIIKFLDSLMR-RLRENHVPSFFIRK 1294 (1476)
Q Consensus 1267 ~~~~il~~L~~~~~-~L~~~~v~~~l~~Q 1294 (1476)
+++.+-+-+..=.+ .++..+|++.+++|
T Consensus 836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 836 TMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 34444433333333 55666677765544
No 259
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=68 Score=39.89 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 928 ELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 928 ~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
..++++..++++..|++.+..+.....+.+..+..++.....+.......+.++..+.--++...+++.+++.+++.-.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888887777777666666677777666666666677777777777777778888877766543
No 260
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.66 E-value=0.44 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
...|+|+|..|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988874
No 261
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.59 E-value=0.57 Score=56.92 Aligned_cols=36 Identities=28% Similarity=0.548 Sum_probs=29.6
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 152 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 152 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334444677889999999999999999999998853
No 262
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.56 E-value=25 Score=42.59 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=7.4
Q ss_pred hhHHHHHhhcCCcc
Q 000467 614 LEAVRISLAGYPTR 627 (1476)
Q Consensus 614 le~iri~~~gyp~r 627 (1476)
+.-|||-|.|-|.|
T Consensus 102 I~~irivRd~~pnr 115 (493)
T KOG0804|consen 102 ISDIRIVRDGMPNR 115 (493)
T ss_pred hheeEEeecCCCce
Confidence 33445555666655
No 263
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.56 E-value=0.38 Score=57.96 Aligned_cols=26 Identities=35% Similarity=0.664 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56799999999999999999998874
No 264
>PLN03025 replication factor C subunit; Provisional
Probab=87.44 E-value=0.68 Score=55.27 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=39.7
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 129 MEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 129 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.++|+-..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567666665554443222 2345566666667799999999999999999998874
No 265
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=87.37 E-value=0.46 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.5
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67889999999999999999999753
No 266
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.37 E-value=0.39 Score=54.74 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhhcC
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFVGG 190 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 190 (1476)
.+..++-+-||||+|||++.|.+++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 46778889999999999999999998864443
No 267
>PRK06217 hypothetical protein; Validated
Probab=87.36 E-value=0.4 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla 186 (1476)
-|+|+|-||||||+.++.+-+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 399999999999999999988763
No 268
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.27 E-value=0.47 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|+|.|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 269
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.22 E-value=1e+02 Score=39.72 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhh
Q 000467 788 RHKAATVIQACWRMCKFRSAFQHH 811 (1476)
Q Consensus 788 ~~~Aa~~IQ~~~R~~~~R~~y~~~ 811 (1476)
.++++++.++.+-.-..|++....
T Consensus 85 ~~k~~~i~~r~~~~~~dr~~~~~~ 108 (716)
T KOG4593|consen 85 LTKAQSILARNYEAEVDRKHKLLT 108 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777878877777777765443
No 270
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.19 E-value=0.34 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 468999999999999999999865
No 271
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.14 E-value=6.2 Score=35.82 Aligned_cols=63 Identities=27% Similarity=0.429 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 000467 935 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSH 997 (1476)
Q Consensus 935 L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~ 997 (1476)
|+.++..|+..++.+..++...+.....+..+.+.....+..+-.++.+|+.+++.+.+++..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666777767777777777777777777766665443
No 272
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=87.14 E-value=0.87 Score=55.90 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 145 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 145 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
+...-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 146 l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 146 LDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred ccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 3344445556666788999999999999999998888753
No 273
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.10 E-value=0.73 Score=57.23 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=38.8
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 130 EQYKGAPFGEL--SPHVFAVADASYRAMISEH-QSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 130 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++|+-+.+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.+.|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46766655554 4666553 44444444 4789999999999999999999998854
No 274
>PF12846 AAA_10: AAA-like domain
Probab=87.08 E-value=0.49 Score=55.38 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45689999999999999999998888765
No 275
>PRK03846 adenylylsulfate kinase; Provisional
Probab=86.93 E-value=0.81 Score=50.60 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=27.2
Q ss_pred cCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 158 EHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 158 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
..+...|.|+|.||||||+.++.+...|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4577899999999999999999999988643
No 276
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.90 E-value=0.5 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEcCCCCCchhHHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla 186 (1476)
|.|||.+|||||+-++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999998874
No 277
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.85 E-value=0.63 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
..|+|+|+.|||||+..+.++.++-
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4599999999999999999888874
No 278
>PRK12377 putative replication protein; Provisional
Probab=86.78 E-value=1 Score=51.56 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 142 PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 142 PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
-|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566665554444332 35799999999999999999999999753
No 279
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.68 E-value=0.47 Score=57.32 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999864
No 280
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.64 E-value=73 Score=37.40 Aligned_cols=17 Identities=47% Similarity=0.558 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000467 880 ISKLQKLLESLNLELDA 896 (1476)
Q Consensus 880 ~~~Lq~~le~l~~el~~ 896 (1476)
+.+|+.++..++.+...
T Consensus 137 V~kL~k~i~~Le~e~~~ 153 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSA 153 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666554433
No 281
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.55 E-value=0.84 Score=54.22 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=36.7
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 130 EQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 130 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
++|+-..+.++..|--+ -...+.....+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~--~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEI--VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHH--HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34555555555445332 23445555555444689999999999999999988874
No 282
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=86.54 E-value=0.54 Score=50.61 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999864
No 283
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.50 E-value=0.49 Score=49.63 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla 186 (1476)
+|+|.|.+|||||+.+|.+-++|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998873
No 284
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.45 E-value=1.9e+02 Score=41.91 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000467 875 AKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQ 914 (1476)
Q Consensus 875 ak~~E~~~Lq~~le~l~~el~~~~~~~~~e~~~~~~~~~~ 914 (1476)
.......+++.++++|..++..++....++..+++.+...
T Consensus 795 s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 795 SEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455566666666666666665555555555444433
No 285
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.40 E-value=0.57 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=22.3
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++|+|+||+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999876
No 286
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.37 E-value=51 Score=44.48 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=8.9
Q ss_pred HHHcCCCHHhHHHHHHHHH
Q 000467 317 MDIVGISHEDQEAIFRTLA 335 (1476)
Q Consensus 317 l~~lg~~~~~~~~i~~ila 335 (1476)
|+.+-.++.+|.+||.-++
T Consensus 99 FDkVFGpes~Q~d~Y~~~v 117 (1041)
T KOG0243|consen 99 FDKVFGPESQQEDLYDQAV 117 (1041)
T ss_pred cceeeCcchhHHHHHHHHH
Confidence 3333344445666665433
No 287
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=86.33 E-value=0.42 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEcCCCCCchhHHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla 186 (1476)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 79999999999999999987764
No 288
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.31 E-value=66 Score=41.26 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=16.9
Q ss_pred CCCCCccchhHHhhchHHHHHHHhhcCc-cccc
Q 000467 1315 RECCTFSNGEYVKSGLAELEKWIVSAKE-EFAG 1346 (1476)
Q Consensus 1315 ~~~cs~s~G~qIr~nls~LE~W~~~~~l-~~~~ 1346 (1476)
+|..-|+| .++-.|+++.|+ +|+.
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL~eya~ 780 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGLGEYAN 780 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCHHHHhh
Confidence 46677888 456679999888 4433
No 289
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=86.20 E-value=0.99 Score=48.13 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.6
Q ss_pred hcCCCeEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 157 SEHQSQSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 157 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
...++-.|-++|-||||||+.+..+=+.|...|
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 345677999999999999999999999998765
No 290
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=86.11 E-value=0.62 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.4
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
.|.|.|.||||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998654
No 291
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.10 E-value=55 Score=35.50 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 000467 970 TIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 1006 (1476)
Q Consensus 970 l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lk 1006 (1476)
+..++...+..+..+..++..+..+...+...+..|+
T Consensus 96 l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 96 LKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444
No 292
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.10 E-value=0.61 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
|.|+|-||||||+.++.+.+.|...
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999888643
No 293
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=86.07 E-value=0.89 Score=57.35 Aligned_cols=55 Identities=22% Similarity=0.465 Sum_probs=39.0
Q ss_pred HHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 130 EQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 130 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++|+-..+.++. +|+...-..| +...+-.++++++|+.|.|||++++.+.+.|-.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456655555543 4544433333 234566899999999999999999999999864
No 294
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.06 E-value=78 Score=37.17 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhc
Q 000467 989 QSLEEKLSHLEDENHVLRQKALS 1011 (1476)
Q Consensus 989 ~~lee~l~~Le~E~~~Lkqk~~~ 1011 (1476)
.+|..++.+|+.+...|+.++..
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555666777777777766543
No 295
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.03 E-value=0.54 Score=56.98 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346999999999999999999999975
No 296
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.87 E-value=0.86 Score=56.03 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=28.7
Q ss_pred HHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 154 AMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 154 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.....+.+.+++|+|.+|+|||.+++.+++.+..
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445667789999999999999999999998854
No 297
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.79 E-value=0.85 Score=58.25 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=26.2
Q ss_pred HhcCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 156 ISEHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 156 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.....++.|+|.||+|+|||..|+.+.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456789999999999999999999987643
No 298
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.74 E-value=0.97 Score=56.64 Aligned_cols=57 Identities=26% Similarity=0.438 Sum_probs=40.3
Q ss_pred HHHhhCCCCCCC--ChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 129 MEQYKGAPFGEL--SPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 129 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
..+|+-..+.++ .+|+-..-..|+ ...+-+|+++++|..|.|||++++.+-+.|-..
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 356766666554 355554333333 245668999999999999999999999888544
No 299
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.66 E-value=1.5 Score=57.32 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 144 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 144 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
+-.|+..-...+...+.+.++.|+|..|.|||.+++++++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444443333333334555677899999999999999999998643
No 300
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.57 E-value=1.2 Score=50.33 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999887754
No 301
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=85.55 E-value=98 Score=38.75 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000467 930 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSL 991 (1476)
Q Consensus 930 ~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~l 991 (1476)
..+....++...+++.+++..+.+++.+.....++...+...+.+.+.+.+..+.+..+..+
T Consensus 347 ~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~L 408 (570)
T COG4477 347 GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSL 408 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33455555566666655555555554444444444444444444444444444444444433
No 302
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.46 E-value=0.63 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.7
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|+|.|.||||||+-|+.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999884
No 303
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=85.42 E-value=0.64 Score=52.09 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 56788999999999999999998877754
No 304
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.41 E-value=32 Score=45.56 Aligned_cols=132 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 000467 874 EAKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKN 953 (1476)
Q Consensus 874 eak~~E~~~Lq~~le~l~~el~~~~~~~~~e~~~~~~~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i 953 (1476)
++.......++.+++.++.+...+...+.+...++.....++...+..+..+ ..++..+.+-+..++.+++......
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eL---q~eL~~~keS~s~~E~ql~~~~e~~ 661 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEEL---QSELESAKESNSLAETQLKAMKESY 661 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 954 STLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 954 ~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
..++.....++.+...+..++..++.++..-+..-..+..++.+|+.++...+.+
T Consensus 662 e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 662 ESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
No 305
>PRK07667 uridine kinase; Provisional
Probab=85.38 E-value=0.69 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999864
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.36 E-value=0.51 Score=56.05 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
++.|++=|-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 678999999999999999999998888654
No 307
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.34 E-value=0.81 Score=58.95 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=38.5
Q ss_pred HHhhCCCCCCCC--hhHHHHHHHHHHHHH-hcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 130 EQYKGAPFGELS--PHVFAVADASYRAMI-SEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 130 ~~y~~~~~~~~~--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
.+|+-..+.++- +|+-.. ..++. ..+-.+++|++|.+|.|||++++.+.+.|-..
T Consensus 16 ~KyRP~~f~dliGq~~~v~~----L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRT----LTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456655555543 343333 33333 35568999999999999999999999998643
No 308
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.33 E-value=37 Score=35.79 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=7.5
Q ss_pred HHhHHHHHHHHHHh
Q 000467 995 LSHLEDENHVLRQK 1008 (1476)
Q Consensus 995 l~~Le~E~~~Lkqk 1008 (1476)
+.+.+.|+..|+..
T Consensus 135 ~rkke~E~~kLk~r 148 (151)
T PF11559_consen 135 LRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566666554
No 309
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=85.27 E-value=1.1 Score=57.14 Aligned_cols=57 Identities=18% Similarity=0.343 Sum_probs=41.4
Q ss_pred HHHHhhCCCCCCCC--hhHHHHHHHHHHHHH-hcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 128 MMEQYKGAPFGELS--PHVFAVADASYRAMI-SEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 128 ~~~~y~~~~~~~~~--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
..++|+-..+.++- +|+-+ .+.++. ..+-++++|++|+.|.|||+.++.+-+.|-..
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~----~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKK----ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567766666654 55433 334444 44678999999999999999999999998643
No 310
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.26 E-value=1.5e+02 Score=39.69 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000467 879 EISKLQKLLESLNLELDA 896 (1476)
Q Consensus 879 E~~~Lq~~le~l~~el~~ 896 (1476)
++..++..++.|+.++.+
T Consensus 473 e~~~lk~~~~~LQ~eLsE 490 (775)
T PF10174_consen 473 ELKELKAKLESLQKELSE 490 (775)
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 344444444444444433
No 311
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.26 E-value=0.59 Score=48.99 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|+|+|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 312
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.21 E-value=0.57 Score=54.44 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
+....|+|+|+.|||||++.+.++.++-.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred ccceEEEEECCCccccchHHHHHhhhccc
Confidence 35788999999999999999999887754
No 313
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=84.97 E-value=0.51 Score=58.97 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
...+..-|-||||||||+++..+|.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356788899999999999999999999754
No 314
>PRK11281 hypothetical protein; Provisional
Probab=84.95 E-value=1.1e+02 Score=42.80 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=12.9
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHh
Q 000467 984 LQQNMQSLEEKLSHLEDENHVLRQK 1008 (1476)
Q Consensus 984 L~~e~~~lee~l~~Le~E~~~Lkqk 1008 (1476)
+.+.+..+-+.+.+..+.+..+.++
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444
No 315
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.94 E-value=0.48 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.7
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
-+++-|+||||||++.|+|-+-+.-.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC
Confidence 46788999999999999988776543
No 316
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.93 E-value=1e+02 Score=37.41 Aligned_cols=15 Identities=33% Similarity=0.206 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 000467 879 EISKLQKLLESLNLE 893 (1476)
Q Consensus 879 E~~~Lq~~le~l~~e 893 (1476)
+++.++-+++.+..+
T Consensus 298 e~Enlqmr~qqleee 312 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEE 312 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 317
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.89 E-value=0.74 Score=46.75 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 567889999999999999999998887
No 318
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=84.86 E-value=57 Score=35.31 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 000467 978 EQKCSSLQQNMQSLEEKLSHLEDENHVLRQ 1007 (1476)
Q Consensus 978 e~~i~~L~~e~~~lee~l~~Le~E~~~Lkq 1007 (1476)
.++....++.+..||.+...|-.||..||+
T Consensus 107 r~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 107 RQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333444444444444444555555555543
No 319
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=84.86 E-value=1.2 Score=52.90 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987743
No 320
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=84.82 E-value=0.7 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998776
No 321
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=84.71 E-value=0.75 Score=49.70 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988775
No 322
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=84.70 E-value=0.78 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999998774
No 323
>PHA00729 NTP-binding motif containing protein
Probab=84.52 E-value=1.4 Score=49.50 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.7
Q ss_pred cCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 158 EHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 158 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
++.-.+|+|+|.+|+|||+.|..+.+.+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33446899999999999999999998764
No 324
>PRK04182 cytidylate kinase; Provisional
Probab=84.50 E-value=0.67 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.5
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yl 185 (1476)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997665
No 325
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.49 E-value=17 Score=40.25 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=34.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhhh
Q 000467 952 KNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKAL 1010 (1476)
Q Consensus 952 ~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~~ 1010 (1476)
+.+.+..+...++++.++...+++.++.+...|+.+.+.+..+...+-+|++.|+.++.
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33334444444444555555566666666666666666666666667777777766653
No 326
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.46 E-value=1.4 Score=54.38 Aligned_cols=56 Identities=14% Similarity=0.349 Sum_probs=40.7
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 130 EQYKGAPFGELSPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 130 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++|+-..+.++--|-..+ ...+++.+. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456655555655444333 246666655 56789999999999999999999988854
No 327
>PRK13764 ATPase; Provisional
Probab=84.45 E-value=0.8 Score=58.61 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999863
No 328
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=84.45 E-value=1.6 Score=53.86 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcC-----------CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 123 LYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEH-----------QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 123 ~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~-----------~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+.++..+..|-....-..++=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678888877655433334444455555555443321 24789999999999999999886654
No 329
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.29 E-value=2.3e+02 Score=40.98 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
-..+|+|.+|||||.+.-.++.+|..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 468899999999999999999998754
No 330
>PRK04040 adenylate kinase; Provisional
Probab=84.27 E-value=0.85 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998883
No 331
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=84.26 E-value=0.74 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCchhHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQ 183 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~ 183 (1476)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877765
No 332
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=84.16 E-value=0.87 Score=50.32 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=28.8
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhhcCCCCCCCCcHHHHHHhhc-h----HHHhhcc
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESN-P----LLEAFGN 215 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~sn-p----iLEaFGn 215 (1476)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999988866543 211 111234555565543 3 5566665
No 333
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=84.15 E-value=33 Score=41.85 Aligned_cols=38 Identities=18% Similarity=0.446 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000467 773 NIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQH 810 (1476)
Q Consensus 773 ~~Rg~~aR~~~~~~r~~~Aa~~IQ~~~R~~~~R~~y~~ 810 (1476)
++--+.+-.++.+..++.||.++|..|.-|+..+-+++
T Consensus 348 hVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~k 385 (489)
T KOG3684|consen 348 HVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVSK 385 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33334444455566668899999999998887766644
No 334
>PRK15453 phosphoribulokinase; Provisional
Probab=84.11 E-value=0.79 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.=-|.|+|-||||||+.++.+-+-|.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999988776554
No 335
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.09 E-value=1.1 Score=55.44 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 142 PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 142 PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.|+... ....+.+...+...+|++.|++|.|||+.++.+-+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 454443 3456677777778899999999999999999987765
No 336
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.08 E-value=0.93 Score=57.13 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 151 SYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 151 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34445432 334689999999999999988888774
No 337
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=84.07 E-value=0.74 Score=49.63 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+---+.+.|.||||||+..|+|+.-.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 44567889999999999999887543
No 338
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.07 E-value=0.94 Score=40.13 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=16.9
Q ss_pred EEEEcCCCCCchhHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQ 183 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~ 183 (1476)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999987655443
No 339
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.98 E-value=75 Score=35.80 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHh
Q 000467 929 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQK-----------CSSLQQNMQSLEEKLSH 997 (1476)
Q Consensus 929 ~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~-----------i~~L~~e~~~lee~l~~ 997 (1476)
.+.+..+..+...++..++.+...+.+++.++.+++.....+..+...++.. .......++++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666655444333333222221 12333445566666665
Q ss_pred HHHHHH
Q 000467 998 LEDENH 1003 (1476)
Q Consensus 998 Le~E~~ 1003 (1476)
++.+..
T Consensus 178 ~ea~ae 183 (219)
T TIGR02977 178 LEAQAE 183 (219)
T ss_pred HHHHHH
Confidence 555443
No 340
>PRK14527 adenylate kinase; Provisional
Probab=83.97 E-value=0.86 Score=50.05 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.+..-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987764
No 341
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=83.82 E-value=1 Score=57.03 Aligned_cols=58 Identities=31% Similarity=0.462 Sum_probs=42.4
Q ss_pred HHHHhhCCCCCCCChhHHHHHHH--HHHHHHhcC-CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 128 MMEQYKGAPFGELSPHVFAVADA--SYRAMISEH-QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 128 ~~~~y~~~~~~~~~PHifavA~~--Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+++|.-....+|.-|-=.|.+- ....+.... ..+-.|++|.+|+|||++.+.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 46678877788888887666543 344444443 34566779999999999999988877
No 342
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.79 E-value=1.6e+02 Score=38.89 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 000467 931 AMAEIRKENAVLKSSLDSLEK 951 (1476)
Q Consensus 931 ~~~~L~~e~~~Lk~~l~~l~~ 951 (1476)
...+|+.||-.|++++..++.
T Consensus 98 dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544443
No 343
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=83.71 E-value=1.5 Score=57.11 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.0
Q ss_pred HHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 153 RAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 153 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
..+.....++.|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344456678999999999999999999998876443
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.69 E-value=1 Score=48.41 Aligned_cols=27 Identities=41% Similarity=0.560 Sum_probs=23.8
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
.|+++|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888654
No 345
>PRK14974 cell division protein FtsY; Provisional
Probab=83.68 E-value=1.9 Score=51.54 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987643
No 346
>PRK09099 type III secretion system ATPase; Provisional
Probab=83.67 E-value=1.7 Score=53.84 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 151 SYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 151 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 153 ~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 153 IVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555556799999999999999999987776654
No 347
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.60 E-value=1.3e+02 Score=39.40 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 000467 961 IKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVL 1005 (1476)
Q Consensus 961 ~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~L 1005 (1476)
.++-...+.+.-+|++.+.+..-|.-.+..-+.++..|++=...|
T Consensus 504 ~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 504 EEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555666665555555544444544444433333
No 348
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=83.52 E-value=1.2 Score=57.29 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 142 PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 142 PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|=|.++-.++|.. +.++.-.|+|+|-||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4455555555543 4556669999999999999999999998865
No 349
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.45 E-value=1.6 Score=55.66 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=39.9
Q ss_pred HHHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 129 MEQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 129 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.++|+-..+.++- +|+...-..++ ...+-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i---~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHAL---ETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567766666654 55554433333 23456788999999999999999999999864
No 350
>PRK06315 type III secretion system ATPase; Provisional
Probab=83.45 E-value=1.3 Score=54.69 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 151 SYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 151 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
|-..+..-++.|.+.|.|+||+|||+..+.++.+.
T Consensus 154 aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 154 CIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 44445556789999999999999999999998876
No 351
>PRK06761 hypothetical protein; Provisional
Probab=83.44 E-value=0.77 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 352
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=83.44 E-value=18 Score=35.30 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 000467 935 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVL 1005 (1476)
Q Consensus 935 L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~L 1005 (1476)
|-.|..+|+.+..-+++.+-+.+.....+..+.......++.++++++.|.=.+..|..++..|+.|+...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566666666665555555555555555555555566666666666666666777776666666643
No 353
>PRK06893 DNA replication initiation factor; Validated
Probab=83.30 E-value=1.8 Score=49.12 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 148 ADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 148 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
+..+.+.+ ....+-++++.|+||+|||..+..+-+.+..-
T Consensus 27 ~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 27 LDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33333444 34566789999999999999999999887653
No 354
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=83.22 E-value=0.81 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCchhHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~ 182 (1476)
.+-|+|+|.||||||+.++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999998883
No 355
>PRK08727 hypothetical protein; Validated
Probab=83.12 E-value=1.7 Score=49.43 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.8
Q ss_pred cCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 158 EHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 158 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
....+.|+|.|+||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999988887654
No 356
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=83.09 E-value=36 Score=40.33 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 851 LERQLEDLTWRVQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELV 930 (1476)
Q Consensus 851 le~ki~el~~rl~~ek~l~~~~~eak~~E~~~Lq~~le~l~~el~~~~~~~~~e~~~~~~~~~~l~~~~~e~~~l~e~~~ 930 (1476)
+..+++++.+.+. ...+....|..+|+.+-.+++..+....+..++...+...-..++...-..-..+ ..+
T Consensus 279 m~tKveelar~Lr-------~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~ql--aLE 349 (442)
T PF06637_consen 279 MTTKVEELARSLR-------AGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQL--ALE 349 (442)
T ss_pred HHHHHHHHHHHHh-------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Q 000467 931 AMAEIRKENAVLKSSLDSLEKKNSTLELELI 961 (1476)
Q Consensus 931 ~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~ 961 (1476)
+...|+++.+.|.+++++.+.+++.++-++.
T Consensus 350 EKaaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 350 EKAALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 357
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=82.96 E-value=1.4 Score=51.57 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=25.3
Q ss_pred cCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 158 EHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 158 ~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+.+=.|+|+|.||||||+.+..+-++|
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567799999999999999999999888
No 358
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.93 E-value=1.2e+02 Score=36.61 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=2.7
Q ss_pred HHhHHHH
Q 000467 985 QQNMQSL 991 (1476)
Q Consensus 985 ~~e~~~l 991 (1476)
+.++++-
T Consensus 302 ~~e~erR 308 (552)
T KOG2129|consen 302 INELERR 308 (552)
T ss_pred HHHHHHH
Confidence 3333333
No 359
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=82.88 E-value=1.1 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.1
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997643
No 360
>PRK08356 hypothetical protein; Provisional
Probab=82.83 E-value=0.81 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCchhHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQ 183 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~ 183 (1476)
--|+|+|.+|||||+.++++-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999954
No 361
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.81 E-value=1.1 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999977766654
No 362
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=82.65 E-value=1.2 Score=44.74 Aligned_cols=26 Identities=38% Similarity=0.707 Sum_probs=23.8
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 363
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.60 E-value=16 Score=32.40 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 000467 959 ELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHL 998 (1476)
Q Consensus 959 ~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~L 998 (1476)
++..++..+.....+|.+.+.++..|..++..|++++.++
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555566666666666666666655555444
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.58 E-value=2.3 Score=49.46 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHh---------cCCCeEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 143 HVFAVADASYRAMIS---------EHQSQSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 143 HifavA~~Ay~~m~~---------~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
.+..+..++++.++. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 355556666666542 23468999999999999999888888887554
No 365
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=82.48 E-value=1.2 Score=52.15 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 144 VFAVADASYRAMISE--------HQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 144 ifavA~~Ay~~m~~~--------~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
++.....+...++.. .+...|+|.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555556565531 245689999999999999999999999764
No 366
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.48 E-value=1.8e+02 Score=38.49 Aligned_cols=216 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000467 794 VIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKRELR-RLKQVANEAGALRLAKNKLERQLEDLTWRVQLEKKLRVST 872 (1476)
Q Consensus 794 ~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~arr~~~-~lr~~~~~~~~l~~~~~~le~ki~el~~rl~~ek~l~~~~ 872 (1476)
.|....++.+--..+.++..-.-.+....+.-..-.... ++....+++..+......++.++..++..++.........
T Consensus 170 ~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 170 LLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHH-----------------
Q 000467 873 EEAKSVEISKLQKLLESLNLELDAAKLATINECNKNAM----------LQNQLELSLKEKSAL----------------- 925 (1476)
Q Consensus 873 ~eak~~E~~~Lq~~le~l~~el~~~~~~~~~e~~~~~~----------~~~~l~~~~~e~~~l----------------- 925 (1476)
.+....+-..+..+.++++.++..++..+.+...++.. ....+....+.....
T Consensus 250 ~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~ 329 (650)
T TIGR03185 250 EKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERD 329 (650)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------------------------------------------------HHHHHHHH-HHHHHHHHHHHhHHHHHHHhhh
Q 000467 926 -------------------------------------------------ERELVAMA-EIRKENAVLKSSLDSLEKKNST 955 (1476)
Q Consensus 926 -------------------------------------------------~e~~~~~~-~L~~e~~~Lk~~l~~l~~~i~e 955 (1476)
......+. ....+...+..+++.++.++++
T Consensus 330 ~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~ 409 (650)
T TIGR03185 330 KELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAE 409 (650)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhh
Q 000467 956 LELELIKA--QKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 1009 (1476)
Q Consensus 956 le~~~~e~--~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkqk~ 1009 (1476)
+++++... .+...++.+++.+.+.++..++.++..+++++..++.+...++.+.
T Consensus 410 l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 410 VDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 367
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=82.42 E-value=1.7 Score=51.72 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.1
Q ss_pred CCCChhHHHHHHHHHHHH----HhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 138 GELSPHVFAVADASYRAM----ISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 138 ~~~~PHifavA~~Ay~~m----~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
..+||---+.+......| ..-+....|++.|-+|||||+.++.+-+.|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456774444444433333 345678899999999999999999987665
No 368
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.34 E-value=1 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|++.|++|.|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888877
No 369
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.30 E-value=0.98 Score=51.24 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.7
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999998854
No 370
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=82.25 E-value=1.9 Score=48.51 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCC--CeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 148 ADASYRAMISEHQ--SQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 148 A~~Ay~~m~~~~~--~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
|-.|-..+..... ...++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4445555554432 3579999999999999888888877653
No 371
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=82.20 E-value=2.3 Score=44.39 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45667889999999999999999999974
No 372
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.09 E-value=1 Score=54.11 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+.+.+.|-|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 578899999999999999998887655
No 373
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=82.07 E-value=1 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999888765
No 374
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.05 E-value=0.98 Score=47.66 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
..-+|.|+|.||+||++.-|.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 4568999999999999977765443
No 375
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=82.04 E-value=1.1 Score=51.69 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
..-|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999997665543
No 376
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.04 E-value=1 Score=50.65 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888876543
No 377
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.94 E-value=1.8e+02 Score=38.06 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=6.9
Q ss_pred ccCCccCCCCc
Q 000467 1431 LDDDLSIPFST 1441 (1476)
Q Consensus 1431 ld~~~~~Pf~~ 1441 (1476)
|-+.-+|||-+
T Consensus 594 L~~~pcipffy 604 (617)
T PF15070_consen 594 LGSNPCIPFFY 604 (617)
T ss_pred CCCCCccccee
Confidence 55556777754
No 378
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.88 E-value=0.68 Score=59.35 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++.+.|.|.|+||||||+..|.++.+..-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999999987643
No 379
>PRK10646 ADP-binding protein; Provisional
Probab=81.88 E-value=2.2 Score=45.00 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.-.|++.|+-|||||+-+|.+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44788999999999999999998883
No 380
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.84 E-value=89 Score=34.54 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=11.7
Q ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHH
Q 000467 940 AVLKSSLDSLEKKNSTLELELIKAQK 965 (1476)
Q Consensus 940 ~~Lk~~l~~l~~~i~ele~~~~e~~~ 965 (1476)
..|...++.++.++++.+..+..++.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 381
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=81.77 E-value=1.1 Score=50.10 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988877544
No 382
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=81.74 E-value=1.7 Score=47.25 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 383
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=81.74 E-value=2.1 Score=53.02 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 144 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 144 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
++...-.|-..+..-++.|.+.|.|.||+|||+..+.+..+
T Consensus 151 ~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 151 PLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44455566666777789999999999999999998877654
No 384
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=81.74 E-value=1.2 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34689999999999999999998663
No 385
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.72 E-value=1.1 Score=50.20 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888776544
No 386
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.71 E-value=55 Score=38.62 Aligned_cols=68 Identities=28% Similarity=0.416 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000467 929 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLS 996 (1476)
Q Consensus 929 ~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~ 996 (1476)
+-....|-.++..|.-+++.|+.++++++..+..++++..+...++......++.|+.++..+.+++.
T Consensus 97 Mv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 97 MVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777788888888888888888888877777765555555555555555555555555443
No 387
>PRK00698 tmk thymidylate kinase; Validated
Probab=81.70 E-value=1.4 Score=48.57 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988643
No 388
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.60 E-value=1.8 Score=55.13 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=39.4
Q ss_pred HHHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 129 MEQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 129 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.++|+-+.+.++- +|+-..-..++. ..+-.+++|++|++|.|||+.++.+.+.|-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3566665555543 565554333332 3456789999999999999999999999853
No 389
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=81.59 E-value=1.1 Score=48.98 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
...+.+.|.|+||||||+..|.++..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999987776643
No 390
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=81.59 E-value=1.6 Score=46.91 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQ 183 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~ 183 (1476)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988866
No 391
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=81.58 E-value=1.1 Score=50.15 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999988887655
No 392
>PRK08116 hypothetical protein; Validated
Probab=81.56 E-value=2.4 Score=49.22 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHh-cCCCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 142 PHVFAVADASYRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 142 PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
.+.|+.|..--..... ...+..+++.|++|+|||..+..|.++|..-
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455555544333322 2345679999999999999999999999754
No 393
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.53 E-value=1.9 Score=54.63 Aligned_cols=55 Identities=18% Similarity=0.381 Sum_probs=41.1
Q ss_pred HHHhhCCCCCCC--ChhHHHHHHHHHHHHH-hcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 129 MEQYKGAPFGEL--SPHVFAVADASYRAMI-SEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 129 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.++|+-+.+.++ .+||-. +.+++. ..+-+++++++|..|.|||++++.+-+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467777666665 355544 444444 4567899999999999999999999999854
No 394
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=81.47 E-value=1.5 Score=46.85 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
..|.|.|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999997653
No 395
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.46 E-value=1.5 Score=52.29 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999998554
No 396
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.43 E-value=0.88 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
....|+|+|.+|||||+..+.++.++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 34699999999999999999888776
No 397
>PRK14528 adenylate kinase; Provisional
Probab=81.38 E-value=1.3 Score=48.62 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999998776
No 398
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=81.38 E-value=1 Score=46.21 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|++|||||+..+.+....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 356889999999999999776655444
No 399
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=81.37 E-value=1 Score=53.97 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+.+.+.|-||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999988887665
No 400
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=81.36 E-value=1.1 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 578899999999999999999888655
No 401
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.35 E-value=1.7 Score=55.05 Aligned_cols=55 Identities=31% Similarity=0.419 Sum_probs=37.8
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 130 EQYKGAPFGEL--SPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 130 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++|+-..+.++ ..|+.+.-..+.. ..+-.++++++|++|+|||+.++.+.+.|-.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35655554444 3455444333332 3456789999999999999999999998864
No 402
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.23 E-value=1.5e+02 Score=37.49 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=14.6
Q ss_pred hhHHhhchHHHHHHHhhcCc
Q 000467 1323 GEYVKSGLAELEKWIVSAKE 1342 (1476)
Q Consensus 1323 G~qIr~nls~LE~W~~~~~l 1342 (1476)
-+-++.-=+.+.+|+++..+
T Consensus 709 d~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 709 DVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred hHHHHhhhHHHHHHHHhccH
Confidence 34555566888999998766
No 403
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.17 E-value=1.2 Score=49.58 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999888877554
No 404
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=81.15 E-value=1.1 Score=56.14 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+-.+.=|-||||||||+.+|.++..+.-
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45667788899999999999999988754
No 405
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=81.12 E-value=1.1 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.9
Q ss_pred EEEcCCCCCchhHHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla 186 (1476)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988764
No 406
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.06 E-value=2.2 Score=53.63 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=37.5
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 130 EQYKGAPFGEL--SPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 130 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
++|+-+.+.++ .+|+- ...+.+... +-++++|++|+.|.|||+.++.+.+.+-
T Consensus 6 ~kyRP~~~~divGq~~i~----~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVK----KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHCCCCHHHccCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46666665554 45663 344445544 4568899999999999999999988764
No 407
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.02 E-value=1.2 Score=49.66 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888877544
No 408
>PRK04195 replication factor C large subunit; Provisional
Probab=81.02 E-value=1.7 Score=55.08 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
....++|+|++|.|||+.++.+.+.+
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999998776
No 409
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=81.00 E-value=0.79 Score=60.08 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhhcC
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFVGG 190 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 190 (1476)
...|.|.|.|+||||||+.+|+++.+..--.|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35789999999999999999999988865443
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.93 E-value=1.8e+02 Score=38.68 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=6.3
Q ss_pred HHHhhhhhhHHH
Q 000467 459 QFCINFANEKLQ 470 (1476)
Q Consensus 459 QlcINyaNEkLq 470 (1476)
=+.|-++|=+|+
T Consensus 299 ~~via~~~G~l~ 310 (717)
T PF10168_consen 299 VLVIATSNGKLY 310 (717)
T ss_pred EEEEEecCCeEE
Confidence 344555555554
No 411
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.90 E-value=2.1 Score=51.76 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=32.0
Q ss_pred HHHHHHHHHhc-CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 148 ADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 148 A~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44455555544 45899999999999999999999998865
No 412
>PRK13768 GTPase; Provisional
Probab=80.86 E-value=1.3 Score=50.91 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=24.3
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998643
No 413
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=80.84 E-value=1.3 Score=50.10 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999988776
No 414
>PLN02796 D-glycerate 3-kinase
Probab=80.83 E-value=1.2 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla 186 (1476)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 378899999999999998887774
No 415
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.77 E-value=1.3 Score=48.05 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=22.2
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888777776543
No 416
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.73 E-value=2 Score=55.26 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=40.4
Q ss_pred HHHhhCCCCCCC--ChhHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 129 MEQYKGAPFGEL--SPHVFAVADASYRAMISEH-QSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 129 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.++|+-+.+.++ .+|+-++-. ++...+ -.+++|++|+.|.|||++++.+-++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~----~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILS----RAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHH----HHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456776665554 467744434 444444 4899999999999999999999999854
No 417
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=80.68 E-value=1.2 Score=53.42 Aligned_cols=28 Identities=32% Similarity=0.531 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
.+.+.+-|-||||||||+..+.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 5678899999999999999999988663
No 418
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=80.60 E-value=1.3 Score=49.71 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467899999999999999888877654
No 419
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.58 E-value=1.2 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887666
No 420
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.45 E-value=1.3 Score=49.16 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|++|||||+..|.++-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888877543
No 421
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.44 E-value=1.7 Score=47.47 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.8
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
||++|-.|||||+-+|.+-+-|-.-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 8999999999999999999988753
No 422
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.41 E-value=2.3 Score=55.15 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=39.1
Q ss_pred HHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 130 EQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 130 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++|+-..+.++- .|+...-..++. ..+-.+++|++|++|.|||+.++.+.++|-.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467666666554 454443333332 3456899999999999999999999999853
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=80.39 E-value=1.6 Score=41.14 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=23.0
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999874
No 424
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.33 E-value=1.4 Score=47.86 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888877544
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=80.31 E-value=5 Score=49.85 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 145 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 145 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 34555677777777899999999999999999988877654
No 426
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.29 E-value=1.9e+02 Score=37.42 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=16.4
Q ss_pred HccCCCCCHHHHH-------HHHhcCccCCCC
Q 000467 1377 QDLCPALTVRQIY-------RICTMYWDDKYG 1401 (1476)
Q Consensus 1377 ~~~C~~L~~~Ql~-------kiL~~Y~~d~~e 1401 (1476)
.+.|..|-..+|. +|-++|.+.++.
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 4678888777774 556677765544
No 427
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.28 E-value=1.3 Score=50.44 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876544
No 428
>PRK03839 putative kinase; Provisional
Probab=80.22 E-value=1.3 Score=47.94 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.3
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|+|.|-+|||||+.++.+-+-+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999988776
No 429
>PRK05439 pantothenate kinase; Provisional
Probab=80.15 E-value=2.9 Score=49.48 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.6
Q ss_pred hcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 157 SEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 157 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
..+..--|.|+|.||||||+.++.+...|..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456677889999999999999988887754
No 430
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.14 E-value=2.9 Score=50.89 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=43.9
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 128 MMEQYKGAPFGELSPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 128 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
..++|+...+.++--|-.++ ...+..... .-++.+++.|+.|.|||+.++.+.+.+..
T Consensus 7 ~~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35678877777777665543 445555544 46789999999999999999999888864
No 431
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=80.08 E-value=1.7 Score=52.65 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHhhcCC
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYLTFVGGR 191 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~ 191 (1476)
..|+|-+-|+|||||++..+++.+|+-.-+|+
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGs 594 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS 594 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCce
Confidence 46999999999999999999999999876654
No 432
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=80.06 E-value=1.2 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 000467 163 SILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yl 185 (1476)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998774
No 433
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=80.06 E-value=1.3 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.3
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 434
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.02 E-value=2.1e+02 Score=37.65 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 000467 929 LVAMAEIRKENAVLKSSLDSLEKKNST 955 (1476)
Q Consensus 929 ~~~~~~L~~e~~~Lk~~l~~l~~~i~e 955 (1476)
..+..++..+...++++.+.+...+.+
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSA 831 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555554444444433
No 435
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=80.00 E-value=1.5 Score=50.77 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTFVG 189 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 189 (1476)
+..-.+++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999886553
No 436
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.90 E-value=1.4 Score=50.74 Aligned_cols=77 Identities=29% Similarity=0.402 Sum_probs=49.9
Q ss_pred cCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCC--CC--CCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchh
Q 000467 100 LNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGA--PF--GELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKT 175 (1476)
Q Consensus 100 ~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~--~~--~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKT 175 (1476)
-|-=|++.|..=+-||-|+..- -|+-- +..-... .+ -.+||-+..++ ...+--|+|+|..|||||
T Consensus 71 ~Dfs~~~~~~~RfRvN~f~qr~-~~a~v-lR~Ip~~i~~~e~LglP~i~~~~~---------~~~~GLILVTGpTGSGKS 139 (353)
T COG2805 71 LDFSYTLPGVARFRVNAFKQRG-GYALV-LRLIPSKIPTLEELGLPPIVRELA---------ESPRGLILVTGPTGSGKS 139 (353)
T ss_pred eeEEEecCCcceEEeehhhhcC-CcEEE-EeccCccCCCHHHcCCCHHHHHHH---------hCCCceEEEeCCCCCcHH
Confidence 4567999998888999887653 22210 0000000 01 13566555543 345667999999999999
Q ss_pred HHHHHHHHHHHh
Q 000467 176 ETTKLIMQYLTF 187 (1476)
Q Consensus 176 e~~k~~~~yla~ 187 (1476)
+|.-.++.|+-.
T Consensus 140 TTlAamId~iN~ 151 (353)
T COG2805 140 TTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHhc
Confidence 999999999853
No 437
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.89 E-value=2.4 Score=46.31 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHh-cCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 152 YRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 152 y~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+++.. .+-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344444 446799999999999999999999988864
No 438
>PLN02939 transferase, transferring glycosyl groups
Probab=79.89 E-value=1.4e+02 Score=40.81 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=14.9
Q ss_pred HHHHHHhcCc-cCCCCcccCCHHHHHHHHH
Q 000467 1387 QIYRICTMYW-DDKYGTQSVSNEVVAQMRE 1415 (1476)
Q Consensus 1387 Ql~kiL~~Y~-~d~~e~~~v~~~~i~~v~~ 1415 (1476)
.+++-...|- |.-+| |.+-..+..|.-
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAy 879 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRY 879 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHC
Confidence 3455555555 55554 566666666643
No 439
>PRK00023 cmk cytidylate kinase; Provisional
Probab=79.84 E-value=1.4 Score=49.85 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 440
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=79.84 E-value=2.7 Score=52.60 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=40.6
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHHHHh-cCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 129 MEQYKGAPFGELSPHVFAVADASYRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 129 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.++|+-..+.++--|--.+. ..+.+.. .+-.+++|+.|+.|.|||+.++.+.++|..
T Consensus 8 ~~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34676666666554544443 3444444 445799999999999999999999999864
No 441
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=79.83 E-value=1.3 Score=49.48 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.+...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467889999999999999888876543
No 442
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=79.66 E-value=1.4 Score=49.14 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..+.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999877776543
No 443
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.66 E-value=66 Score=31.68 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000467 898 KLATINECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREV 977 (1476)
Q Consensus 898 ~~~~~~e~~~~~~~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~ 977 (1476)
+............+...+..+..+ ++.......+|.++++.|+..+..+........+...+++....++...+...
T Consensus 1 ~ee~~~l~as~~el~n~La~Le~s---lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 1 KEEKEALEASQNELQNRLASLERS---LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp -------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHhHH
Q 000467 978 EQKCSSLQQNMQSLEEKLSHLE 999 (1476)
Q Consensus 978 e~~i~~L~~e~~~lee~l~~Le 999 (1476)
.....+|+..+...+....-++
T Consensus 78 K~ak~~l~~r~~k~~~dka~le 99 (107)
T PF09304_consen 78 KQAKLELESRLLKAQKDKAILE 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH
No 444
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.64 E-value=1 Score=51.12 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
...+.+.|.|+||||||+..|.+...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999998887775543
No 445
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.58 E-value=2.2 Score=56.33 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 150 ASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 150 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+...++..+++|.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777888899999999999999999998765
No 446
>PRK14531 adenylate kinase; Provisional
Probab=79.50 E-value=1.6 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
|-|+|.|.+|||||+.++.+-+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 447
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=79.47 E-value=96 Score=33.84 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 000467 924 ALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENH 1003 (1476)
Q Consensus 924 ~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~ 1003 (1476)
.|.+.+-+...|+.++..++..+..-+.+...|+..+.-.+..-.+........+++...|..+......++.+++..+.
T Consensus 99 ~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 99 RLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777777777777777666666655556666666777777777777777778888888887
Q ss_pred HHHHhh
Q 000467 1004 VLRQKA 1009 (1476)
Q Consensus 1004 ~Lkqk~ 1009 (1476)
.|..+.
T Consensus 179 ~Lq~q~ 184 (192)
T PF11180_consen 179 QLQRQA 184 (192)
T ss_pred HHHHHh
Confidence 777654
No 448
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=79.41 E-value=53 Score=33.17 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 000467 969 NTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 1004 (1476)
Q Consensus 969 ~l~~~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~ 1004 (1476)
++.++.+.++-++..|+....++++++.+|+.++..
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666666665543
No 449
>PRK12608 transcription termination factor Rho; Provisional
Probab=79.40 E-value=1.9 Score=51.92 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 146 AVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 146 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 677888888888899999999999999999999998887754
No 450
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=79.35 E-value=3.8 Score=50.06 Aligned_cols=61 Identities=20% Similarity=0.094 Sum_probs=39.9
Q ss_pred CHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhc---------CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 125 NVHMMEQYKGAPFGELSPHVFAVADASYRAMISE---------HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 125 ~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~---------~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
++.-+..|-+...-..+.=+-+++..+|.+..+. ..+..|++.|.+|+|||+.++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555544444444555666666666543322 125899999999999999998886665
No 451
>PF13479 AAA_24: AAA domain
Probab=79.35 E-value=1.2 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCCCchhHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLI 181 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~ 181 (1476)
+++..|+|-|+||+|||+.++.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 35788999999999999876655
No 452
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.33 E-value=21 Score=39.24 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHhHHHHHHHHHHhh
Q 000467 934 EIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEE----KLSHLEDENHVLRQKA 1009 (1476)
Q Consensus 934 ~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~e~~~lee----~l~~Le~E~~~Lkqk~ 1009 (1476)
.+.+++..++..+.++..+++.......+. .++..+..++.+++.++..|+.++..... .+.+++.+...++..+
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444332222211 33445566666666666666666654432 4556666666665544
No 453
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=79.29 E-value=1.4 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHH
Q 000467 161 SQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 161 ~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
.-.|+|.|+||+||||+|=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999998877765
No 454
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=79.25 E-value=1.1 Score=58.07 Aligned_cols=29 Identities=21% Similarity=0.547 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
.+.|.+.|.|+||||||+..|.++..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 57899999999999999999999987753
No 455
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.21 E-value=1.6 Score=46.90 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999888887654
No 456
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.21 E-value=87 Score=37.83 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 000467 851 LERQLEDLTWRV 862 (1476)
Q Consensus 851 le~ki~el~~rl 862 (1476)
.+.++.++..++
T Consensus 11 ~dqr~~~~~~~l 22 (459)
T KOG0288|consen 11 NDQRLIDLNTEL 22 (459)
T ss_pred hhhHHHHHHHHH
Confidence 333344443333
No 457
>PRK06620 hypothetical protein; Validated
Probab=79.17 E-value=2.5 Score=47.40 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCchhHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLI 181 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~ 181 (1476)
.+++|.|++|+|||..++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999988753
No 458
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=79.16 E-value=1.4 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
+-||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998876
No 459
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=79.02 E-value=1.5 Score=49.80 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999888776443
No 460
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=78.99 E-value=1.6 Score=49.10 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999987776543
No 461
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.90 E-value=3.5 Score=49.31 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHhh
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYLTFV 188 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 188 (1476)
...++++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988753
No 462
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.87 E-value=2.9 Score=48.46 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 141 SPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 141 ~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.|++=.+-+.+.+.+. .+..|++.|++|+|||+.++.+-+.+
T Consensus 4 t~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 4 TDAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CHHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3556666666665554 35689999999999999998876644
No 463
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.83 E-value=1.5 Score=48.92 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+ +.+.|.|+||||||+..+.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999888876544
No 464
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.80 E-value=1.5 Score=49.83 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467889999999999999988887654
No 465
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.79 E-value=2e+02 Score=36.66 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHHHH
Q 000467 790 KAATVIQACWRMCKF 804 (1476)
Q Consensus 790 ~Aa~~IQ~~~R~~~~ 804 (1476)
.|+.+.......|+.
T Consensus 135 ~Aa~i~n~l~~~yi~ 149 (498)
T TIGR03007 135 LAKDVVQTLLTIFVE 149 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444454444443
No 466
>PRK06921 hypothetical protein; Provisional
Probab=78.78 E-value=2.2 Score=49.56 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
...++++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 5689999999999999999888887764
No 467
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.75 E-value=39 Score=31.07 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=6.3
Q ss_pred HHHHHhHHHHHHHhhhH
Q 000467 940 AVLKSSLDSLEKKNSTL 956 (1476)
Q Consensus 940 ~~Lk~~l~~l~~~i~el 956 (1476)
..|+.++++++++...+
T Consensus 21 ~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 21 ALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33333333333333333
No 468
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.74 E-value=2.9 Score=45.48 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
...+.+++.|.+|.|||..+..+.+.+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999988876
No 469
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=78.74 E-value=1.6 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999988887644
No 470
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.74 E-value=1.6 Score=51.16 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=25.0
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhcC
Q 000467 163 SILVSGESGAGKTETTKLIMQYLTFVGG 190 (1476)
Q Consensus 163 sIiisGeSGaGKTe~~k~~~~yla~~~~ 190 (1476)
-|++.|++|+|||+.++.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 471
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.70 E-value=79 Score=39.87 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhh
Q 000467 1209 FKQQLTACVEKI-FGLIRDNLKKELS 1233 (1476)
Q Consensus 1209 ~~qqL~~~v~~i-y~~l~~~~~~~l~ 1233 (1476)
-.+|+-+-+..| |+..+..+.+-+.
T Consensus 551 ~~EqvcnWlae~Gl~qY~n~~r~wv~ 576 (861)
T KOG1899|consen 551 RSEQVCNWLAEIGLGQYMNEVRRWVR 576 (861)
T ss_pred cHHHHHHHHHHhchHHHHHHHHHHHh
Confidence 344555555555 5555555554443
No 472
>PLN02348 phosphoribulokinase
Probab=78.66 E-value=2.6 Score=51.12 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYLT 186 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yla 186 (1476)
++.=-|-|+|.||||||+.++.|.+.|-
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444566899999999999999998884
No 473
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=78.65 E-value=1.6 Score=48.47 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999888876543
No 474
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=78.64 E-value=3.6 Score=50.61 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHH
Q 000467 162 QSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 162 QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
-+|++.|++|+|||+.++.+-+.+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 589999999999999998886544
No 475
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=78.63 E-value=1.6 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999888776544
No 476
>PRK02496 adk adenylate kinase; Provisional
Probab=78.63 E-value=1.6 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 477
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.62 E-value=1.4e+02 Score=34.89 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 000467 973 KLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQ 1007 (1476)
Q Consensus 973 ~l~~~e~~i~~L~~e~~~lee~l~~Le~E~~~Lkq 1007 (1476)
.+.+...+...|+.++++.+..-+-++.|+..|+.
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666665555556666665553
No 478
>PRK09087 hypothetical protein; Validated
Probab=78.47 E-value=2.6 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHH
Q 000467 160 QSQSILVSGESGAGKTETTKLIMQ 183 (1476)
Q Consensus 160 ~~QsIiisGeSGaGKTe~~k~~~~ 183 (1476)
.+..++|.|+||+|||+.+..+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456699999999999998875554
No 479
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.42 E-value=0.99 Score=46.75 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
..+..|+|+||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56788999999999999987755543
No 480
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=78.41 E-value=1.6 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQ 183 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~ 183 (1476)
...+.+.|.|+||||||+..|.+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999998888754
No 481
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=78.40 E-value=1.6 Score=49.41 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...+.+.|.|+||||||+..|.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357789999999999999988887654
No 482
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.38 E-value=2.8 Score=53.96 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=38.4
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHh-cCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 000467 130 EQYKGAPFGEL--SPHVFAVADASYRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 130 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
++|+-+.+.++ .+|+-. +..++.. .+-.+++|++|..|.|||++++.+-+.|-.
T Consensus 7 rKyRPktFddVIGQe~vv~----~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSR----ALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45666555554 456633 3444444 445789999999999999999999998854
No 483
>PRK06936 type III secretion system ATPase; Provisional
Probab=78.34 E-value=2.8 Score=51.75 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 146 AVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 146 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 147 ~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 147 SLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred cCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 3334455556566789999999999999999888777654
No 484
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.23 E-value=1.7 Score=48.38 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
.+.+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988877653
No 485
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=78.20 E-value=1.8 Score=47.21 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=22.3
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHh
Q 000467 164 ILVSGESGAGKTETTKLIMQYLTF 187 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yla~ 187 (1476)
|+|.|-.|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999864
No 486
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.16 E-value=1.7 Score=46.81 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999987776543
No 487
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.12 E-value=1.7 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIMQ 183 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~~ 183 (1476)
...+.+.|.|+||||||+..+.|.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999999999998887764
No 488
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.10 E-value=2.8e+02 Score=37.98 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHH
Q 000467 144 VFAVADASYRAMISEHQSQSILVSGESGAGKTET 177 (1476)
Q Consensus 144 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 177 (1476)
||..|-.-+=.=+-.|-|-+|+.-|..|+|||.|
T Consensus 112 ~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyT 145 (1041)
T KOG0243|consen 112 LYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYT 145 (1041)
T ss_pred HHHHHHHHHHHHHhccCCceEEEecCCCCCceee
Confidence 3433333333333456778888888888888865
No 489
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=78.07 E-value=2.9 Score=54.24 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 130 EQYKGAPFGELSPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 130 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
++|+-+.+.++--|-..+. +.+.++.. +-.+++|++|+.|.|||+.++.+.+.|
T Consensus 8 ~KyRP~~f~divGQe~vv~--~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLT--ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
No 490
>PRK10908 cell division protein FtsE; Provisional
Probab=78.03 E-value=1.7 Score=48.85 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~ 182 (1476)
...+.+.|.|+||||||+..+.|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 491
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.02 E-value=2.6e+02 Score=37.67 Aligned_cols=200 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 000467 789 HKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKRELRRLKQVANEAGALRLAKNK--------LERQLEDLTW 860 (1476)
Q Consensus 789 ~~Aa~~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~arr~~~~lr~~~~~~~~l~~~~~~--------le~ki~el~~ 860 (1476)
..|+.+.......|+....-.+...+.-..+ |-......--+++..+.+++...+...+- .+.++.++..
T Consensus 167 ~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~--~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ 244 (754)
T TIGR01005 167 KLAAAIPDAIAAAYIAGQGAAKSESNTAAAD--FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNT 244 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHH
Q ss_pred HHHHHHHHHhhHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000467 861 RVQLEKKLRVSTEEAKS--------------------------VEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQ 914 (1476)
Q Consensus 861 rl~~ek~l~~~~~eak~--------------------------~E~~~Lq~~le~l~~el~~~~~~~~~e~~~~~~~~~~ 914 (1476)
++...+..+...+.... ..+..|+.++.+++.++.++.......--....+..+
T Consensus 245 ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~q 324 (754)
T TIGR01005 245 ELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSS 324 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000467 915 LELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKA---QKENNNTIEKLREVEQKCSSLQQNMQSL 991 (1476)
Q Consensus 915 l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~ele~~~~e~---~~e~~~l~~~l~~~e~~i~~L~~e~~~l 991 (1476)
++.+..++... -..-+..+..+...++...+.++.++.+++.+...+ +.+...+..+.+..++-++.+.+..++.
T Consensus 325 i~~l~~~i~~e--~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 325 LADLDAQIRSE--LQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 000467 992 E 992 (1476)
Q Consensus 992 e 992 (1476)
+
T Consensus 403 ~ 403 (754)
T TIGR01005 403 A 403 (754)
T ss_pred H
No 492
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=77.98 E-value=3.1e+02 Score=38.46 Aligned_cols=173 Identities=20% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000467 828 KRELRRLKQVANEAGALRLAKNKLERQLEDLTWRVQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDAAKLATINECNK 907 (1476)
Q Consensus 828 rr~~~~lr~~~~~~~~l~~~~~~le~ki~el~~rl~~ek~l~~~~~eak~~E~~~Lq~~le~l~~el~~~~~~~~~e~~~ 907 (1476)
.+.+-..-.+.+-..++-..+.......++.......-..++..++.+. .+...+...+..+...++...+-.++
T Consensus 171 KkkfD~IF~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e-----~~~l~i~~~~~ki~~~ke~v~e~e~e 245 (1294)
T KOG0962|consen 171 KKKFDDIFSATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAE-----VLRLNIHSGQRKIEKSKEEVSELENE 245 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000467 908 NAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNS-TLELELIKAQKENNNTIEKLREVEQKCSSLQQ 986 (1476)
Q Consensus 908 ~~~~~~~l~~~~~e~~~l~e~~~~~~~L~~e~~~Lk~~l~~l~~~i~-ele~~~~e~~~e~~~l~~~l~~~e~~i~~L~~ 986 (1476)
+......+.........+.....++..+..+...+..+++.+..++. -.+.....+.+........+.+.+.+...++.
T Consensus 246 ~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~ 325 (1294)
T KOG0962|consen 246 LGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELER 325 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHH
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q 000467 987 NMQSLEEKLSHLEDENHVL 1005 (1476)
Q Consensus 987 e~~~lee~l~~Le~E~~~L 1005 (1476)
+...++++...+..+...+
T Consensus 326 ~~~~l~~e~~~l~~~k~~~ 344 (1294)
T KOG0962|consen 326 EISDLNEERSSLIQLKTEL 344 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 493
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=77.98 E-value=4 Score=50.52 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred CccCCcEEEEecCCCCEEEEEEEEeecCCEEEEEe--------------CCCceeeEEeeeeeehhhhcccccccccccC
Q 000467 2 NLRKGSKVWVEDKDLAWVAAEVVSDSVGRHVQVLT--------------ATGKKFGVVFFFFSIILQVLAAPERVFLRAT 67 (1476)
Q Consensus 2 ~~~~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (1476)
....|+.|+|.++...-+.|+| ....++.+.+.. ..|... .+...+-+.- +
T Consensus 23 ~~~~ge~~~i~~~~~~~~~~eV-i~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~-------------~v~vg~~lLG-r 87 (422)
T TIGR02546 23 GARVGELCLIRRRDPSQLLAEV-VGFTGDEALLSPLGELHGISPGSEVIPTGRPL-------------SIRVGEALLG-R 87 (422)
T ss_pred CCCCCCEEEEeeCCCCeEEEEE-EEEcCCcEEEEEccCccCCCCCCEEEECCCCc-------------eEEeChhhcc-C
Q ss_pred CCCCCCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCccEEEEcCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHH
Q 000467 68 DDDEEHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAV 147 (1476)
Q Consensus 68 ~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHifav 147 (1476)
--+..-.-.|+...+..-+ ++++ -..--+.||....+ +-.+|..
T Consensus 88 ViD~~G~plD~~~~~~~~~----------------~~~~-pi~~~~~~~~~R~~-------------------i~~~l~t 131 (422)
T TIGR02546 88 VLDGFGRPLDGKGELPAGE----------------IETR-PLDADPPPPMSRQP-------------------IDQPLPT 131 (422)
T ss_pred EeCCCCCcccCCCCCCCCC----------------ceee-eccCCCcCHHHccC-------------------cccccCC
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHH
Q 000467 148 ADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQY 184 (1476)
Q Consensus 148 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 184 (1476)
.-.+...+..-++.|.+.|.|.||+|||+..+.+...
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 168 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARG 168 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCC
No 494
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.90 E-value=2.8 Score=51.97 Aligned_cols=61 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred CHHHHHHhhCCCCCCCChhHHHHHHHHHHHH-----HhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 125 NVHMMEQYKGAPFGELSPHVFAVADASYRAM-----ISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 125 ~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m-----~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
.+-.++.|+-....+|.-|-=.|++---.-- ...-+++-.+|+|.||+|||++.|.+-+=|
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
No 495
>PRK07429 phosphoribulokinase; Provisional
Probab=77.89 E-value=1.6 Score=52.16 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=0.0
Q ss_pred EEEcCCCCCchhHHHHHHHHHH
Q 000467 164 ILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 164 IiisGeSGaGKTe~~k~~~~yl 185 (1476)
|-|+|.||||||+.++.+...|
T Consensus 11 IgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 11 LGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred EEEECCCCCCHHHHHHHHHhHh
No 496
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=77.84 E-value=1.7 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~ 182 (1476)
++.+.+.|.|+||||||+...-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
No 497
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=77.83 E-value=1.6 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~ 182 (1476)
...+.+.|.|+||||||+..|.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHc
No 498
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=77.82 E-value=1.7 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~ 182 (1476)
...+.+.|.|+||||||+..|.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 499
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=77.78 E-value=3.1 Score=53.49 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 000467 130 EQYKGAPFGEL--SPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 185 (1476)
Q Consensus 130 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 185 (1476)
++|+-+.+.++ .+|+-..-..++.. .+-.+++|++|+.|.|||+++|.+-+.+
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHh
No 500
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.77 E-value=1.8 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHH
Q 000467 159 HQSQSILVSGESGAGKTETTKLIM 182 (1476)
Q Consensus 159 ~~~QsIiisGeSGaGKTe~~k~~~ 182 (1476)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Done!