Query 000468
Match_columns 1473
No_of_seqs 518 out of 2317
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-242 2E-247 2246.2 99.6 1353 3-1464 2-1395(1463)
2 PTZ00014 myosin-A; Provisional 100.0 1E-207 3E-212 1951.1 74.5 769 4-777 27-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 2E-192 4E-197 1794.4 63.5 674 62-735 1-674 (674)
4 KOG0160 Myosin class V heavy c 100.0 2E-189 3E-194 1740.4 64.1 752 60-824 6-758 (862)
5 KOG0161 Myosin class II heavy 100.0 9E-186 2E-190 1815.1 92.2 774 5-807 25-822 (1930)
6 cd01380 MYSc_type_V Myosin mot 100.0 3E-188 7E-193 1765.6 60.9 664 63-731 1-691 (691)
7 cd01377 MYSc_type_II Myosin mo 100.0 2E-187 4E-192 1759.0 62.5 667 60-731 3-693 (693)
8 cd01381 MYSc_type_VII Myosin m 100.0 1E-187 3E-192 1752.4 60.5 661 63-731 1-671 (671)
9 cd01378 MYSc_type_I Myosin mot 100.0 8E-186 2E-190 1739.8 61.0 662 63-731 1-674 (674)
10 cd01383 MYSc_type_VIII Myosin 100.0 7E-186 2E-190 1735.1 60.2 657 60-731 6-677 (677)
11 cd01387 MYSc_type_XV Myosin mo 100.0 5E-185 1E-189 1730.6 61.0 661 62-731 1-677 (677)
12 cd01385 MYSc_type_IX Myosin mo 100.0 2E-184 4E-189 1729.0 63.6 664 61-732 6-689 (692)
13 cd01382 MYSc_type_VI Myosin mo 100.0 2E-184 4E-189 1734.5 62.5 665 60-731 2-716 (717)
14 KOG0164 Myosin class I heavy c 100.0 3E-184 7E-189 1593.4 55.3 728 61-805 7-755 (1001)
15 KOG0163 Myosin class VI heavy 100.0 6E-181 1E-185 1563.0 76.3 788 8-812 2-841 (1259)
16 cd01379 MYSc_type_III Myosin m 100.0 6E-182 1E-186 1693.5 61.4 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 2E-180 4E-185 1700.0 62.6 667 61-732 5-677 (677)
18 cd00124 MYSc Myosin motor doma 100.0 2E-178 3E-183 1687.2 62.2 662 63-731 1-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 1E-178 3E-183 1682.5 60.2 660 64-731 2-767 (767)
20 KOG0162 Myosin class I heavy c 100.0 5E-179 1E-183 1548.0 50.3 694 60-764 16-724 (1106)
21 PF00063 Myosin_head: Myosin h 100.0 4E-170 9E-175 1629.4 53.2 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 8E-117 2E-121 1118.8 28.7 754 60-827 59-1009(1062)
23 PF01843 DIL: DIL domain; Int 99.9 1.3E-27 2.8E-32 236.0 5.7 105 1348-1455 1-105 (105)
24 KOG1892 Actin filament-binding 99.9 1.7E-21 3.8E-26 234.3 17.1 236 1153-1465 586-828 (1629)
25 KOG0161 Myosin class II heavy 99.4 1.5E-09 3.2E-14 147.6 40.1 286 353-682 324-627 (1930)
26 cd01363 Motor_domain Myosin an 98.7 1.9E-08 4.2E-13 110.0 7.5 90 132-230 8-98 (186)
27 KOG0160 Myosin class V heavy c 98.4 1.3E-06 2.9E-11 111.7 13.3 87 783-872 672-758 (862)
28 KOG0520 Uncharacterized conser 98.4 5.2E-07 1.1E-11 115.3 7.9 118 735-852 809-934 (975)
29 COG5022 Myosin heavy chain [Cy 98.2 0.00053 1.1E-08 91.0 30.9 77 786-862 747-823 (1463)
30 PF02736 Myosin_N: Myosin N-te 98.2 5.4E-06 1.2E-10 68.0 6.7 41 10-50 1-41 (42)
31 KOG0520 Uncharacterized conser 97.9 1.1E-05 2.3E-10 103.6 6.7 142 731-880 786-939 (975)
32 KOG0971 Microtubule-associated 97.4 0.16 3.4E-06 64.8 30.6 29 1317-1345 896-924 (1243)
33 KOG1029 Endocytic adaptor prot 97.3 0.032 6.9E-07 69.6 22.8 23 1368-1390 1008-1030(1118)
34 KOG0971 Microtubule-associated 97.2 0.13 2.8E-06 65.6 27.3 66 872-940 283-351 (1243)
35 KOG4229 Myosin VII, myosin IXB 97.2 0.0001 2.2E-09 97.3 0.4 268 604-873 643-1007(1062)
36 PF09726 Macoilin: Transmembra 97.1 0.11 2.3E-06 67.8 26.3 144 880-1029 458-608 (697)
37 KOG0250 DNA repair protein RAD 96.9 0.92 2E-05 60.2 31.8 27 1346-1372 931-957 (1074)
38 KOG0933 Structural maintenance 96.9 0.4 8.7E-06 62.4 27.7 21 154-178 30-50 (1174)
39 TIGR02169 SMC_prok_A chromosom 96.8 4.7 0.0001 56.7 44.8 8 434-441 6-13 (1164)
40 TIGR02169 SMC_prok_A chromosom 96.8 4.8 0.0001 56.6 42.3 7 520-526 38-44 (1164)
41 KOG1029 Endocytic adaptor prot 96.8 2.9 6.3E-05 53.2 35.1 27 881-907 443-469 (1118)
42 PF09726 Macoilin: Transmembra 96.8 0.39 8.4E-06 62.7 27.4 68 981-1048 588-655 (697)
43 PF12718 Tropomyosin_1: Tropom 96.6 0.29 6.3E-06 51.5 20.4 130 886-1040 11-140 (143)
44 KOG0164 Myosin class I heavy c 96.5 0.012 2.5E-07 73.0 10.9 82 783-874 695-786 (1001)
45 PRK11637 AmiB activator; Provi 96.5 0.58 1.2E-05 58.3 26.2 19 1022-1040 233-251 (428)
46 PF00612 IQ: IQ calmodulin-bin 96.5 0.0033 7.1E-08 43.7 3.5 19 785-803 2-20 (21)
47 KOG0163 Myosin class VI heavy 96.5 0.86 1.9E-05 57.4 26.0 58 789-855 779-836 (1259)
48 PRK11637 AmiB activator; Provi 96.4 0.57 1.2E-05 58.3 25.2 32 1017-1048 221-252 (428)
49 COG1196 Smc Chromosome segrega 96.3 9.6 0.00021 53.7 43.1 29 1016-1044 461-489 (1163)
50 KOG2128 Ras GTPase-activating 96.3 0.12 2.6E-06 69.3 18.4 114 742-855 513-645 (1401)
51 PF00612 IQ: IQ calmodulin-bin 96.3 0.0054 1.2E-07 42.6 3.5 19 737-755 2-20 (21)
52 PRK04863 mukB cell division pr 96.2 11 0.00024 53.7 38.4 39 1011-1049 438-476 (1486)
53 PF00038 Filament: Intermediat 96.1 4.5 9.7E-05 48.1 30.7 39 880-918 66-104 (312)
54 KOG0933 Structural maintenance 96.1 3.3 7.1E-05 54.5 28.8 69 975-1043 838-906 (1174)
55 TIGR02168 SMC_prok_B chromosom 96.1 3.6 7.8E-05 57.8 33.0 19 150-168 24-42 (1179)
56 KOG0996 Structural maintenance 96.0 9.6 0.00021 51.3 41.8 10 721-730 250-259 (1293)
57 PF12128 DUF3584: Protein of u 96.0 12 0.00027 52.7 36.9 111 1321-1451 1044-1173(1201)
58 KOG0925 mRNA splicing factor A 95.8 0.0084 1.8E-07 71.7 4.2 57 102-167 24-80 (699)
59 KOG0250 DNA repair protein RAD 95.8 12 0.00026 50.3 35.6 36 1011-1046 425-460 (1074)
60 PF07888 CALCOCO1: Calcium bin 95.6 9.8 0.00021 48.1 32.8 79 971-1049 369-451 (546)
61 KOG2128 Ras GTPase-activating 95.6 0.19 4E-06 67.6 15.6 120 760-879 508-646 (1401)
62 KOG4643 Uncharacterized coiled 95.5 14 0.0003 49.0 37.1 49 885-933 404-455 (1195)
63 PF15070 GOLGA2L5: Putative go 95.5 2.3 5E-05 55.0 24.6 73 971-1043 151-230 (617)
64 PRK02224 chromosome segregatio 95.4 15 0.00033 50.2 34.3 19 1325-1343 720-738 (880)
65 PF15066 CAGE1: Cancer-associa 95.4 0.9 2E-05 54.8 18.9 105 882-998 331-436 (527)
66 KOG1853 LIS1-interacting prote 95.4 4.1 8.9E-05 45.5 22.4 26 977-1002 95-120 (333)
67 PF12128 DUF3584: Protein of u 95.3 21 0.00046 50.4 41.0 15 754-768 240-254 (1201)
68 COG1579 Zn-ribbon protein, pos 95.3 2.9 6.4E-05 47.5 21.9 36 972-1007 88-123 (239)
69 PHA02562 46 endonuclease subun 95.3 2.3 5E-05 54.8 24.5 26 972-997 298-323 (562)
70 PF08317 Spc7: Spc7 kinetochor 95.2 5 0.00011 48.2 25.2 57 971-1027 207-263 (325)
71 PRK03918 chromosome segregatio 95.2 2.2 4.7E-05 58.2 25.0 19 151-169 25-43 (880)
72 KOG2129 Uncharacterized conser 95.2 6.5 0.00014 46.9 24.5 28 972-999 252-279 (552)
73 PRK09039 hypothetical protein; 95.2 0.92 2E-05 54.7 18.8 18 892-909 56-73 (343)
74 PRK02224 chromosome segregatio 95.1 8.5 0.00018 52.6 30.2 9 717-725 133-141 (880)
75 PTZ00014 myosin-A; Provisional 95.0 0.042 9.2E-07 72.7 7.4 40 786-825 779-818 (821)
76 COG4942 Membrane-bound metallo 94.9 8.9 0.00019 46.9 25.6 38 1013-1050 215-252 (420)
77 PRK03918 chromosome segregatio 94.8 5.4 0.00012 54.5 27.3 15 1371-1385 786-800 (880)
78 KOG4643 Uncharacterized coiled 94.8 21 0.00045 47.4 29.7 22 885-906 173-194 (1195)
79 KOG0996 Structural maintenance 94.8 23 0.0005 47.9 40.9 10 1381-1390 941-950 (1293)
80 KOG0995 Centromere-associated 94.8 14 0.0003 46.5 27.0 17 882-898 308-324 (581)
81 smart00015 IQ Short calmodulin 94.7 0.032 7E-07 40.9 3.0 20 784-803 3-22 (26)
82 KOG4674 Uncharacterized conser 94.7 30 0.00066 49.4 32.9 61 846-906 658-720 (1822)
83 PF14662 CCDC155: Coiled-coil 94.7 4.1 8.8E-05 44.5 19.7 77 976-1052 63-139 (193)
84 PF07888 CALCOCO1: Calcium bin 94.6 18 0.0004 45.8 29.5 31 1022-1052 371-401 (546)
85 KOG0999 Microtubule-associated 94.5 5.5 0.00012 49.1 22.2 34 972-1005 106-139 (772)
86 PRK09039 hypothetical protein; 94.3 5 0.00011 48.5 22.1 21 890-910 75-95 (343)
87 PHA02562 46 endonuclease subun 94.2 8.6 0.00019 49.6 25.9 20 971-990 304-323 (562)
88 PF00261 Tropomyosin: Tropomyo 94.1 9.5 0.00021 43.7 23.0 17 1023-1039 198-214 (237)
89 PF06785 UPF0242: Uncharacteri 94.0 7.4 0.00016 45.4 21.0 34 973-1006 134-167 (401)
90 PF13207 AAA_17: AAA domain; P 93.8 0.04 8.8E-07 55.5 2.8 23 151-173 1-23 (121)
91 COG3883 Uncharacterized protei 93.8 5.9 0.00013 45.6 20.0 19 922-940 81-99 (265)
92 COG1196 Smc Chromosome segrega 93.8 44 0.00096 47.3 43.3 8 434-441 7-14 (1163)
93 TIGR00606 rad50 rad50. This fa 93.8 14 0.00031 52.7 28.4 21 150-170 29-49 (1311)
94 PF00261 Tropomyosin: Tropomyo 93.7 1.5 3.2E-05 50.2 15.5 26 973-998 92-117 (237)
95 smart00015 IQ Short calmodulin 93.7 0.074 1.6E-06 39.0 3.1 20 736-755 3-22 (26)
96 PF05667 DUF812: Protein of un 93.7 2.7 5.9E-05 54.1 19.1 41 1011-1051 443-483 (594)
97 PF15070 GOLGA2L5: Putative go 93.4 34 0.00073 44.7 30.4 33 998-1030 199-231 (617)
98 PF08317 Spc7: Spc7 kinetochor 93.4 19 0.00041 43.3 24.6 9 670-678 13-21 (325)
99 KOG0994 Extracellular matrix g 93.3 41 0.0009 45.3 35.1 38 84-121 192-229 (1758)
100 KOG0980 Actin-binding protein 93.2 38 0.00081 44.7 28.9 10 1435-1444 935-944 (980)
101 KOG0963 Transcription factor/C 93.2 32 0.0007 43.8 27.2 24 884-907 191-214 (629)
102 KOG4673 Transcription factor T 93.1 33 0.00072 43.7 28.0 13 427-439 9-21 (961)
103 PF05667 DUF812: Protein of un 93.1 17 0.00037 47.1 24.8 72 972-1043 446-526 (594)
104 smart00787 Spc7 Spc7 kinetocho 93.1 11 0.00023 45.1 21.5 10 669-678 8-17 (312)
105 KOG0612 Rho-associated, coiled 93.1 35 0.00076 46.5 27.5 19 1030-1048 675-693 (1317)
106 PF09755 DUF2046: Uncharacteri 93.0 23 0.0005 41.7 24.0 15 1035-1049 184-198 (310)
107 PF10168 Nup88: Nuclear pore c 93.0 9.1 0.0002 50.7 22.8 21 621-641 421-441 (717)
108 KOG4360 Uncharacterized coiled 92.9 2.4 5.1E-05 51.9 15.7 78 973-1050 226-303 (596)
109 COG1579 Zn-ribbon protein, pos 92.9 21 0.00045 40.9 22.3 41 970-1010 93-133 (239)
110 PF13401 AAA_22: AAA domain; P 92.8 0.068 1.5E-06 54.5 2.5 29 147-175 2-30 (131)
111 TIGR03185 DNA_S_dndD DNA sulfu 92.8 17 0.00037 48.0 25.1 33 1012-1044 425-457 (650)
112 KOG1103 Predicted coiled-coil 92.6 21 0.00047 41.6 21.9 46 1005-1050 249-294 (561)
113 PF07111 HCR: Alpha helical co 92.6 34 0.00075 44.1 25.6 43 881-923 100-142 (739)
114 smart00787 Spc7 Spc7 kinetocho 92.6 28 0.00061 41.6 24.3 6 864-869 136-141 (312)
115 KOG0977 Nuclear envelope prote 92.5 39 0.00085 43.0 32.0 29 1022-1050 342-370 (546)
116 KOG0946 ER-Golgi vesicle-tethe 92.5 23 0.0005 46.0 23.9 30 552-581 388-417 (970)
117 KOG0980 Actin-binding protein 92.4 47 0.001 43.8 27.9 12 1160-1171 718-729 (980)
118 COG4372 Uncharacterized protei 92.4 30 0.00065 41.4 28.3 64 973-1036 210-280 (499)
119 KOG4674 Uncharacterized conser 92.4 73 0.0016 45.8 37.3 66 887-952 764-829 (1822)
120 PF13191 AAA_16: AAA ATPase do 92.4 0.082 1.8E-06 57.1 2.6 33 144-176 19-51 (185)
121 TIGR03015 pepcterm_ATPase puta 92.1 0.13 2.9E-06 59.4 4.2 28 147-174 41-68 (269)
122 PF13238 AAA_18: AAA domain; P 92.1 0.094 2E-06 53.0 2.5 22 152-173 1-22 (129)
123 cd00009 AAA The AAA+ (ATPases 92.0 0.18 3.9E-06 51.3 4.5 29 146-174 16-44 (151)
124 PF04849 HAP1_N: HAP1 N-termin 91.8 5.2 0.00011 46.9 16.2 22 977-998 231-252 (306)
125 PF15619 Lebercilin: Ciliary p 91.7 25 0.00054 39.1 23.0 70 973-1042 118-191 (194)
126 TIGR02322 phosphon_PhnN phosph 91.7 0.12 2.5E-06 56.1 2.8 25 150-174 2-26 (179)
127 PRK01156 chromosome segregatio 91.5 17 0.00037 49.8 23.9 63 1322-1385 731-813 (895)
128 cd02019 NK Nucleoside/nucleoti 91.5 0.14 3.1E-06 46.7 2.8 22 152-173 2-23 (69)
129 TIGR02168 SMC_prok_B chromosom 91.5 80 0.0017 44.5 47.5 18 1372-1389 1088-1105(1179)
130 PRK09270 nucleoside triphospha 91.5 0.3 6.4E-06 55.5 5.9 34 145-178 29-62 (229)
131 COG0444 DppD ABC-type dipeptid 91.4 0.11 2.4E-06 60.8 2.3 28 147-174 29-56 (316)
132 KOG0977 Nuclear envelope prote 91.4 37 0.0008 43.2 24.1 24 921-944 106-129 (546)
133 PF12718 Tropomyosin_1: Tropom 91.2 22 0.00048 37.5 20.0 53 991-1043 77-129 (143)
134 KOG4360 Uncharacterized coiled 91.2 11 0.00024 46.4 18.5 13 1333-1345 505-517 (596)
135 KOG0976 Rho/Rac1-interacting s 91.0 61 0.0013 42.1 31.1 34 1012-1045 369-402 (1265)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.0 11 0.00024 39.2 16.3 69 973-1051 59-127 (132)
137 PF00004 AAA: ATPase family as 90.9 0.14 3.1E-06 51.9 2.4 23 152-174 1-23 (132)
138 PRK07196 fliI flagellum-specif 90.9 0.25 5.5E-06 60.9 4.9 43 131-173 137-179 (434)
139 TIGR00150 HI0065_YjeE ATPase, 90.9 0.32 6.9E-06 50.5 4.9 27 147-173 20-46 (133)
140 PF10481 CENP-F_N: Cenp-F N-te 90.8 4.4 9.6E-05 46.0 13.7 40 1015-1054 95-134 (307)
141 PRK06696 uridine kinase; Valid 90.7 0.29 6.3E-06 55.3 4.9 40 134-175 9-48 (223)
142 PF14662 CCDC155: Coiled-coil 90.7 30 0.00065 38.0 23.0 30 972-1001 101-130 (193)
143 PF07111 HCR: Alpha helical co 90.6 45 0.00098 43.1 23.7 23 1020-1042 240-262 (739)
144 PRK05480 uridine/cytidine kina 90.6 0.2 4.4E-06 55.8 3.5 27 147-173 4-30 (209)
145 PRK00300 gmk guanylate kinase; 90.5 0.17 3.7E-06 56.1 2.7 26 148-173 4-29 (205)
146 KOG0612 Rho-associated, coiled 90.5 86 0.0019 43.0 28.6 12 567-578 241-252 (1317)
147 cd01131 PilT Pilus retraction 90.5 0.17 3.8E-06 56.1 2.7 25 151-175 3-27 (198)
148 cd00820 PEPCK_HprK Phosphoenol 90.5 0.2 4.3E-06 50.0 2.8 23 148-170 14-36 (107)
149 PRK13833 conjugal transfer pro 90.3 0.27 5.9E-06 58.6 4.3 34 140-175 137-170 (323)
150 cd02023 UMPK Uridine monophosp 90.3 0.18 3.9E-06 55.7 2.7 22 152-173 2-23 (198)
151 KOG4593 Mitotic checkpoint pro 90.2 68 0.0015 41.5 32.2 36 872-907 141-176 (716)
152 COG5185 HEC1 Protein involved 90.2 54 0.0012 40.2 22.8 10 604-613 79-88 (622)
153 PF09789 DUF2353: Uncharacteri 90.2 48 0.001 39.5 25.3 22 922-943 80-101 (319)
154 cd01918 HprK_C HprK/P, the bif 90.1 0.22 4.8E-06 52.6 2.9 25 148-172 13-37 (149)
155 KOG4593 Mitotic checkpoint pro 90.1 71 0.0015 41.4 29.8 33 1020-1052 280-315 (716)
156 TIGR01843 type_I_hlyD type I s 90.0 32 0.00069 42.5 22.4 14 1024-1037 248-261 (423)
157 cd01129 PulE-GspE PulE/GspE Th 89.9 0.32 6.9E-06 56.6 4.4 35 140-175 72-106 (264)
158 COG0194 Gmk Guanylate kinase [ 89.9 0.2 4.2E-06 54.5 2.4 25 149-173 4-28 (191)
159 PRK01156 chromosome segregatio 89.9 96 0.0021 42.7 35.5 32 1018-1049 412-443 (895)
160 KOG4403 Cell surface glycoprot 89.8 33 0.00072 41.5 20.3 55 696-750 68-128 (575)
161 COG5185 HEC1 Protein involved 89.8 58 0.0012 40.0 22.5 22 603-624 75-96 (622)
162 PRK12402 replication factor C 89.8 0.39 8.4E-06 57.5 5.2 56 117-174 6-61 (337)
163 PF00485 PRK: Phosphoribulokin 89.8 0.2 4.4E-06 55.3 2.5 26 152-177 2-27 (194)
164 PF13851 GAS: Growth-arrest sp 89.8 38 0.00083 37.9 20.8 39 971-1009 91-129 (201)
165 PF09789 DUF2353: Uncharacteri 89.7 41 0.00089 40.1 21.2 27 883-909 73-99 (319)
166 smart00382 AAA ATPases associa 89.6 0.21 4.5E-06 50.2 2.3 28 149-176 2-29 (148)
167 PF15619 Lebercilin: Ciliary p 89.6 38 0.00083 37.6 22.0 18 1023-1040 165-182 (194)
168 TIGR00235 udk uridine kinase. 89.6 0.27 5.8E-06 54.9 3.3 28 147-174 4-31 (207)
169 TIGR03420 DnaA_homol_Hda DnaA 89.6 0.46 9.9E-06 53.4 5.2 39 137-175 26-64 (226)
170 PF10168 Nup88: Nuclear pore c 89.4 41 0.00088 44.8 23.3 50 541-591 377-431 (717)
171 PF05701 WEMBL: Weak chloropla 89.4 77 0.0017 40.8 29.3 34 1017-1050 318-351 (522)
172 PHA02544 44 clamp loader, smal 89.3 0.37 8.1E-06 57.3 4.5 53 117-173 12-67 (316)
173 PF01583 APS_kinase: Adenylyls 89.2 0.37 8E-06 51.4 3.8 29 149-177 2-30 (156)
174 PRK08233 hypothetical protein; 89.1 0.22 4.8E-06 53.9 2.2 25 150-174 4-28 (182)
175 PF04437 RINT1_TIP1: RINT-1 / 89.1 8 0.00017 49.3 16.4 169 1262-1447 307-491 (494)
176 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.1 31 0.00067 35.9 18.2 65 972-1039 65-129 (132)
177 TIGR02173 cyt_kin_arch cytidyl 89.0 0.24 5.3E-06 52.9 2.4 23 151-173 2-24 (171)
178 PTZ00301 uridine kinase; Provi 89.0 0.27 5.9E-06 55.1 2.8 24 151-174 5-28 (210)
179 cd02020 CMPK Cytidine monophos 88.9 0.28 6.1E-06 50.9 2.7 22 152-173 2-23 (147)
180 KOG0018 Structural maintenance 88.9 1.1E+02 0.0023 41.7 34.0 39 785-823 211-249 (1141)
181 PF05701 WEMBL: Weak chloropla 88.8 83 0.0018 40.5 32.5 49 1004-1052 284-332 (522)
182 cd02025 PanK Pantothenate kina 88.7 0.28 6.1E-06 55.4 2.7 24 152-175 2-25 (220)
183 PRK08972 fliI flagellum-specif 88.7 0.7 1.5E-05 57.0 6.2 41 132-172 145-185 (444)
184 PRK06547 hypothetical protein; 88.5 0.58 1.3E-05 50.8 4.9 29 145-173 11-39 (172)
185 KOG0964 Structural maintenance 88.5 32 0.00068 45.8 20.4 14 1434-1447 946-959 (1200)
186 KOG1937 Uncharacterized conser 88.5 44 0.00095 40.9 20.2 15 663-677 75-89 (521)
187 cd02028 UMPK_like Uridine mono 88.4 0.31 6.8E-06 53.2 2.8 24 152-175 2-25 (179)
188 PRK05541 adenylylsulfate kinas 88.4 0.31 6.7E-06 52.8 2.7 29 147-175 5-33 (176)
189 PF08614 ATG16: Autophagy prot 88.4 3 6.5E-05 46.3 10.5 38 1013-1050 142-179 (194)
190 KOG2891 Surface glycoprotein [ 88.4 42 0.00091 38.2 18.9 28 654-681 107-138 (445)
191 TIGR00606 rad50 rad50. This fa 88.3 1.5E+02 0.0032 42.8 37.2 12 354-365 172-183 (1311)
192 COG1340 Uncharacterized archae 88.3 59 0.0013 38.2 29.2 74 972-1045 178-251 (294)
193 PRK07261 topology modulation p 88.3 0.33 7.1E-06 52.6 2.8 23 151-173 2-24 (171)
194 PF07724 AAA_2: AAA domain (Cd 88.3 0.37 7.9E-06 52.3 3.2 24 151-174 5-28 (171)
195 COG1660 Predicted P-loop-conta 88.2 0.27 6E-06 55.7 2.1 19 151-169 3-21 (286)
196 TIGR01843 type_I_hlyD type I s 88.1 29 0.00064 42.8 20.3 10 715-724 55-64 (423)
197 cd01130 VirB11-like_ATPase Typ 88.1 0.31 6.8E-06 53.5 2.5 26 149-174 25-50 (186)
198 PF13851 GAS: Growth-arrest sp 88.0 50 0.0011 37.0 22.0 28 974-1001 101-128 (201)
199 PRK06762 hypothetical protein; 87.9 0.43 9.2E-06 51.1 3.4 25 149-173 2-26 (166)
200 PF15254 CCDC14: Coiled-coil d 87.9 1E+02 0.0022 40.4 25.5 56 983-1038 497-552 (861)
201 PF05729 NACHT: NACHT domain 87.8 0.41 8.9E-06 50.4 3.2 27 151-177 2-28 (166)
202 TIGR03007 pepcterm_ChnLen poly 87.8 41 0.00089 42.8 21.7 17 971-987 252-268 (498)
203 TIGR02782 TrbB_P P-type conjug 87.7 0.67 1.4E-05 54.9 5.1 27 149-175 132-158 (299)
204 PRK08118 topology modulation p 87.7 0.39 8.6E-06 51.8 2.9 25 150-174 2-26 (167)
205 KOG0964 Structural maintenance 87.6 1E+02 0.0023 41.3 24.1 74 976-1049 414-494 (1200)
206 PF12846 AAA_10: AAA-like doma 87.6 0.41 8.9E-06 55.9 3.3 29 149-177 1-29 (304)
207 PF00910 RNA_helicase: RNA hel 87.6 0.37 8E-06 48.0 2.5 25 152-176 1-25 (107)
208 PRK10884 SH3 domain-containing 87.6 5.9 0.00013 44.3 12.1 77 972-1051 92-168 (206)
209 TIGR02928 orc1/cdc6 family rep 87.5 0.54 1.2E-05 57.0 4.3 36 140-175 31-66 (365)
210 PRK14737 gmk guanylate kinase; 87.5 0.35 7.5E-06 53.3 2.4 25 149-173 4-28 (186)
211 cd00227 CPT Chloramphenicol (C 87.5 0.44 9.5E-06 51.7 3.1 25 149-173 2-26 (175)
212 PF13870 DUF4201: Domain of un 87.4 48 0.001 36.2 19.7 26 1016-1041 146-171 (177)
213 PRK10078 ribose 1,5-bisphospho 87.4 0.33 7.2E-06 53.2 2.2 25 149-173 2-26 (186)
214 PRK10884 SH3 domain-containing 87.3 5.7 0.00012 44.5 11.7 12 978-989 137-148 (206)
215 PF04156 IncA: IncA protein; 87.3 15 0.00033 40.3 15.2 28 1016-1043 159-186 (191)
216 cd00071 GMPK Guanosine monopho 87.2 0.33 7.1E-06 50.6 1.9 22 152-173 2-23 (137)
217 TIGR01420 pilT_fam pilus retra 87.2 0.38 8.2E-06 58.2 2.7 26 149-174 122-147 (343)
218 PRK00131 aroK shikimate kinase 87.2 0.48 1E-05 50.7 3.2 26 148-173 3-28 (175)
219 COG4372 Uncharacterized protei 87.2 76 0.0017 38.1 23.4 31 1015-1045 252-282 (499)
220 PRK13851 type IV secretion sys 87.1 0.45 9.8E-06 57.3 3.3 26 149-174 162-187 (344)
221 PF03668 ATP_bind_2: P-loop AT 87.1 0.38 8.2E-06 55.8 2.5 20 150-169 2-21 (284)
222 PRK00889 adenylylsulfate kinas 87.1 0.62 1.3E-05 50.4 4.0 29 148-176 3-31 (175)
223 PLN03025 replication factor C 87.0 0.71 1.5E-05 55.2 4.9 56 117-174 4-59 (319)
224 PRK08084 DNA replication initi 86.9 0.89 1.9E-05 51.9 5.4 40 136-175 32-71 (235)
225 PRK14961 DNA polymerase III su 86.9 0.95 2E-05 55.2 5.9 54 117-174 7-63 (363)
226 COG4172 ABC-type uncharacteriz 86.9 0.33 7.2E-06 58.0 1.9 28 149-176 36-63 (534)
227 cd01120 RecA-like_NTPases RecA 86.9 0.5 1.1E-05 49.4 3.1 25 152-176 2-26 (165)
228 TIGR01005 eps_transp_fam exopo 86.8 1.3E+02 0.0028 40.5 29.4 26 1020-1045 374-399 (754)
229 cd02024 NRK1 Nicotinamide ribo 86.7 0.41 8.8E-06 52.7 2.4 22 152-173 2-23 (187)
230 TIGR01313 therm_gnt_kin carboh 86.7 0.35 7.6E-06 51.6 1.8 23 152-174 1-23 (163)
231 PRK08472 fliI flagellum-specif 86.6 1.8 3.9E-05 53.7 8.1 42 132-173 140-181 (434)
232 PRK13900 type IV secretion sys 86.5 0.62 1.4E-05 55.9 4.0 31 142-174 155-185 (332)
233 KOG4673 Transcription factor T 86.5 1.1E+02 0.0024 39.3 37.1 55 888-942 579-633 (961)
234 KOG0979 Structural maintenance 86.5 90 0.0019 42.1 22.9 20 884-903 204-223 (1072)
235 PRK04778 septation ring format 86.3 43 0.00094 43.5 20.8 74 975-1048 350-423 (569)
236 TIGR00554 panK_bact pantothena 86.2 1 2.2E-05 53.0 5.5 30 146-175 59-88 (290)
237 TIGR02524 dot_icm_DotB Dot/Icm 86.2 0.47 1E-05 57.6 2.8 28 148-175 133-160 (358)
238 PRK12377 putative replication 86.2 1.1 2.4E-05 51.6 5.6 45 130-176 84-128 (248)
239 KOG1853 LIS1-interacting prote 86.2 66 0.0014 36.4 23.4 23 979-1001 104-126 (333)
240 PRK14738 gmk guanylate kinase; 86.2 0.51 1.1E-05 52.7 2.9 26 147-172 11-36 (206)
241 TIGR03263 guanyl_kin guanylate 86.1 0.38 8.3E-06 52.1 1.8 24 150-173 2-25 (180)
242 TIGR02680 conserved hypothetic 86.1 89 0.0019 44.9 25.2 166 873-1048 221-394 (1353)
243 PRK09099 type III secretion sy 85.9 1.5 3.3E-05 54.4 7.0 36 138-173 152-187 (441)
244 PRK00440 rfc replication facto 85.9 0.84 1.8E-05 54.1 4.7 55 118-174 9-63 (319)
245 COG4608 AppF ABC-type oligopep 85.9 0.48 1E-05 54.5 2.4 32 147-178 37-68 (268)
246 PF13245 AAA_19: Part of AAA d 85.9 0.88 1.9E-05 42.6 3.8 28 148-175 9-36 (76)
247 PTZ00112 origin recognition co 85.8 1.3 2.7E-05 58.4 6.3 45 132-176 764-808 (1164)
248 PF04091 Sec15: Exocyst comple 85.8 2.7 5.9E-05 50.1 8.9 131 1317-1449 176-310 (311)
249 cd02027 APSK Adenosine 5'-phos 85.7 0.56 1.2E-05 49.6 2.8 24 152-175 2-25 (149)
250 PRK00411 cdc6 cell division co 85.6 0.83 1.8E-05 56.1 4.6 33 143-175 49-81 (394)
251 PRK06315 type III secretion sy 85.5 0.75 1.6E-05 57.0 4.1 38 136-173 151-188 (442)
252 PRK14956 DNA polymerase III su 85.5 0.91 2E-05 56.7 4.8 54 118-175 10-66 (484)
253 KOG0249 LAR-interacting protei 85.4 94 0.002 40.2 21.5 19 1369-1395 756-774 (916)
254 PRK06217 hypothetical protein; 85.4 0.52 1.1E-05 51.5 2.4 23 151-173 3-25 (183)
255 TIGR02525 plasmid_TraJ plasmid 85.3 0.56 1.2E-05 57.1 2.8 27 149-175 149-175 (372)
256 PRK10751 molybdopterin-guanine 85.3 0.61 1.3E-05 50.6 2.8 27 150-176 7-33 (173)
257 KOG1003 Actin filament-coating 85.2 65 0.0014 35.5 21.2 23 884-906 20-42 (205)
258 TIGR02902 spore_lonB ATP-depen 85.2 0.91 2E-05 58.1 4.8 30 144-173 81-110 (531)
259 PRK08903 DnaA regulatory inact 85.2 1.4 2.9E-05 49.9 5.7 29 147-175 40-68 (227)
260 KOG1003 Actin filament-coating 85.1 40 0.00087 37.0 16.0 31 972-1002 59-89 (205)
261 PRK03846 adenylylsulfate kinas 85.0 1.1 2.3E-05 49.8 4.7 32 145-176 20-51 (198)
262 PF00437 T2SE: Type II/IV secr 85.0 0.53 1.1E-05 54.7 2.4 28 148-175 126-153 (270)
263 KOG4807 F-actin binding protei 85.0 95 0.0021 37.2 20.5 216 823-1044 297-541 (593)
264 PRK07721 fliI flagellum-specif 84.8 2.8 6.1E-05 52.2 8.7 41 133-173 142-182 (438)
265 cd00464 SK Shikimate kinase (S 84.8 0.6 1.3E-05 49.0 2.5 23 151-173 1-23 (154)
266 PF10473 CENP-F_leu_zip: Leuci 84.8 56 0.0012 34.4 20.6 15 892-906 20-34 (140)
267 PF13671 AAA_33: AAA domain; P 84.8 0.5 1.1E-05 48.9 1.8 23 152-174 2-24 (143)
268 PRK06645 DNA polymerase III su 84.7 1 2.2E-05 57.0 4.9 56 118-176 13-70 (507)
269 COG1123 ATPase components of v 84.5 0.51 1.1E-05 59.3 2.0 30 147-176 33-62 (539)
270 COG0572 Udk Uridine kinase [Nu 84.5 0.66 1.4E-05 51.9 2.7 24 151-174 10-33 (218)
271 COG1125 OpuBA ABC-type proline 84.4 0.46 1E-05 53.8 1.4 27 150-176 28-54 (309)
272 PF00038 Filament: Intermediat 84.3 97 0.0021 36.8 34.6 36 972-1007 215-250 (312)
273 COG1102 Cmk Cytidylate kinase 84.3 0.75 1.6E-05 48.9 2.8 23 152-174 3-25 (179)
274 PRK14964 DNA polymerase III su 84.2 1.1 2.4E-05 56.4 4.7 57 118-177 5-63 (491)
275 PRK05342 clpX ATP-dependent pr 84.0 1.7 3.6E-05 53.9 6.1 63 111-173 59-132 (412)
276 PF03205 MobB: Molybdopterin g 84.0 0.79 1.7E-05 48.1 2.9 27 151-177 2-28 (140)
277 PF10498 IFT57: Intra-flagella 84.0 15 0.00033 44.6 14.0 55 977-1031 263-317 (359)
278 COG0563 Adk Adenylate kinase a 84.0 0.73 1.6E-05 50.4 2.7 23 151-173 2-24 (178)
279 PF05911 DUF869: Plant protein 84.0 1.7E+02 0.0037 39.3 27.8 80 973-1052 120-206 (769)
280 COG1340 Uncharacterized archae 83.5 1E+02 0.0022 36.3 24.3 31 1018-1048 210-240 (294)
281 cd02021 GntK Gluconate kinase 83.5 0.7 1.5E-05 48.5 2.3 22 152-173 2-23 (150)
282 PRK05688 fliI flagellum-specif 83.4 0.98 2.1E-05 56.1 3.8 42 131-172 150-191 (451)
283 PF15254 CCDC14: Coiled-coil d 83.3 1.4E+02 0.003 39.3 22.0 25 883-907 428-452 (861)
284 PHA00729 NTP-binding motif con 83.2 1.5 3.3E-05 49.6 4.9 37 137-174 6-42 (226)
285 KOG1937 Uncharacterized conser 83.1 1.3E+02 0.0027 37.2 22.5 34 973-1006 345-378 (521)
286 PF08826 DMPK_coil: DMPK coile 83.1 13 0.00029 33.3 9.6 45 998-1042 15-59 (61)
287 PF03266 NTPase_1: NTPase; In 83.1 0.85 1.8E-05 49.4 2.8 24 152-175 2-25 (168)
288 COG1493 HprK Serine kinase of 83.1 0.66 1.4E-05 53.8 2.0 24 149-172 145-168 (308)
289 PRK13764 ATPase; Provisional 83.1 0.91 2E-05 58.3 3.4 27 149-175 257-283 (602)
290 TIGR01360 aden_kin_iso1 adenyl 83.1 0.84 1.8E-05 49.6 2.8 23 151-173 5-27 (188)
291 PRK13342 recombination factor 83.1 1.3 2.7E-05 55.1 4.6 43 130-173 18-60 (413)
292 KOG0994 Extracellular matrix g 83.0 2E+02 0.0043 39.4 36.3 19 649-667 1291-1309(1758)
293 TIGR02533 type_II_gspE general 83.0 1 2.2E-05 56.9 3.8 35 139-174 233-267 (486)
294 PRK11281 hypothetical protein; 82.9 75 0.0016 44.4 21.3 175 867-1044 58-256 (1113)
295 PF10473 CENP-F_leu_zip: Leuci 82.9 64 0.0014 34.0 16.1 19 922-940 18-36 (140)
296 PRK09825 idnK D-gluconate kina 82.9 0.92 2E-05 49.4 3.0 26 149-174 3-28 (176)
297 PRK05057 aroK shikimate kinase 82.8 0.91 2E-05 49.3 2.9 25 149-173 4-28 (172)
298 cd02029 PRK_like Phosphoribulo 82.8 0.94 2E-05 52.4 3.1 24 152-175 2-25 (277)
299 PF09730 BicD: Microtubule-ass 82.8 90 0.002 41.3 20.9 18 974-991 98-115 (717)
300 PRK04182 cytidylate kinase; Pr 82.8 0.78 1.7E-05 49.4 2.4 23 151-173 2-24 (180)
301 PRK06002 fliI flagellum-specif 82.7 1 2.3E-05 55.8 3.6 31 142-172 158-188 (450)
302 COG1124 DppF ABC-type dipeptid 82.6 0.89 1.9E-05 51.4 2.7 29 147-175 31-59 (252)
303 TIGR02903 spore_lon_C ATP-depe 82.6 1.6 3.5E-05 56.8 5.5 36 141-176 167-202 (615)
304 COG4172 ABC-type uncharacteriz 82.6 0.75 1.6E-05 55.2 2.2 30 147-176 311-340 (534)
305 PRK09111 DNA polymerase III su 82.6 1.1 2.3E-05 58.0 3.8 55 118-176 16-73 (598)
306 PF04111 APG6: Autophagy prote 82.4 13 0.00027 44.6 12.4 13 1321-1333 289-301 (314)
307 smart00333 TUDOR Tudor domain. 82.4 3.7 8E-05 35.7 6.1 51 6-56 2-54 (57)
308 cd03115 SRP The signal recogni 82.4 1.2 2.5E-05 48.1 3.5 27 151-177 2-28 (173)
309 PRK14957 DNA polymerase III su 82.3 1.7 3.6E-05 55.6 5.3 55 117-175 7-64 (546)
310 KOG4809 Rab6 GTPase-interactin 82.3 1.5E+02 0.0032 37.4 22.0 39 1012-1050 421-459 (654)
311 PRK14974 cell division protein 82.1 2.1 4.7E-05 51.4 5.9 31 147-177 138-168 (336)
312 PF10481 CENP-F_N: Cenp-F N-te 82.0 1E+02 0.0023 35.5 19.8 33 973-1005 95-127 (307)
313 PRK14955 DNA polymerase III su 82.0 1.8 3.9E-05 53.5 5.4 56 118-175 8-64 (397)
314 PF07728 AAA_5: AAA domain (dy 81.9 0.95 2E-05 46.8 2.5 23 151-173 1-23 (139)
315 PRK04040 adenylate kinase; Pro 81.9 0.94 2E-05 49.9 2.6 25 150-174 3-27 (188)
316 PF10186 Atg14: UV radiation r 81.9 37 0.0008 39.9 16.3 27 976-1002 73-99 (302)
317 PLN03188 kinesin-12 family pro 81.9 2.2E+02 0.0048 39.7 24.2 37 130-166 147-183 (1320)
318 PRK07667 uridine kinase; Provi 81.8 1.7 3.7E-05 48.0 4.6 26 150-175 18-43 (193)
319 COG4026 Uncharacterized protei 81.8 11 0.00025 41.5 10.5 59 985-1043 140-198 (290)
320 PRK14732 coaE dephospho-CoA ki 81.7 1.1 2.3E-05 49.8 3.0 48 152-204 2-54 (196)
321 PRK05896 DNA polymerase III su 81.7 1.8 3.9E-05 55.6 5.3 59 116-176 6-65 (605)
322 PRK13894 conjugal transfer ATP 81.7 0.99 2.2E-05 53.9 2.9 27 149-175 148-174 (319)
323 PRK08727 hypothetical protein; 81.6 2 4.3E-05 49.1 5.1 31 146-176 38-68 (233)
324 PF03215 Rad17: Rad17 cell cyc 81.5 1.3 2.8E-05 56.3 4.0 58 116-173 9-69 (519)
325 KOG2991 Splicing regulator [RN 81.5 1E+02 0.0022 35.1 24.9 81 971-1051 215-307 (330)
326 PRK06893 DNA replication initi 81.4 2.1 4.6E-05 48.6 5.3 40 136-176 27-66 (229)
327 KOG1962 B-cell receptor-associ 81.4 5.7 0.00012 44.4 8.3 62 978-1039 149-210 (216)
328 PF07475 Hpr_kinase_C: HPr Ser 81.4 0.99 2.1E-05 48.6 2.4 23 149-171 18-40 (171)
329 TIGR01005 eps_transp_fam exopo 81.3 1.1E+02 0.0024 41.2 22.2 14 833-846 168-181 (754)
330 TIGR03499 FlhF flagellar biosy 81.1 1.3 2.9E-05 52.0 3.6 45 132-176 169-221 (282)
331 PRK15093 antimicrobial peptide 81.1 1 2.3E-05 54.1 2.8 27 147-173 31-57 (330)
332 PRK14527 adenylate kinase; Pro 81.0 1.3 2.8E-05 48.8 3.3 28 147-174 4-31 (191)
333 KOG0924 mRNA splicing factor A 81.0 1.6 3.5E-05 55.0 4.3 40 132-177 357-396 (1042)
334 PRK15453 phosphoribulokinase; 80.9 1.2 2.5E-05 52.0 3.0 27 148-174 4-30 (290)
335 PRK14969 DNA polymerase III su 80.9 1.7 3.8E-05 55.5 4.8 55 117-175 7-64 (527)
336 PF13555 AAA_29: P-loop contai 80.9 1.5 3.2E-05 39.4 3.0 21 151-171 25-45 (62)
337 KOG0804 Cytoplasmic Zn-finger 80.9 49 0.0011 40.6 16.2 16 1030-1045 429-444 (493)
338 TIGR00064 ftsY signal recognit 80.9 2.6 5.7E-05 49.2 6.0 47 131-177 45-100 (272)
339 PRK06761 hypothetical protein; 80.9 0.99 2.1E-05 52.8 2.4 26 150-175 4-29 (282)
340 cd03293 ABC_NrtD_SsuB_transpor 80.8 1.1 2.3E-05 50.5 2.6 27 147-173 28-54 (220)
341 PF02367 UPF0079: Uncharacteri 80.8 1.2 2.5E-05 45.8 2.6 27 147-173 13-39 (123)
342 TIGR00176 mobB molybdopterin-g 80.7 1.3 2.8E-05 47.3 3.1 26 152-177 2-27 (155)
343 PRK11308 dppF dipeptide transp 80.7 1.1 2.4E-05 53.8 2.8 27 147-173 39-65 (327)
344 TIGR02673 FtsE cell division A 80.7 1.1 2.4E-05 50.0 2.7 27 147-173 26-52 (214)
345 COG0529 CysC Adenylylsulfate k 80.7 2.1 4.6E-05 46.3 4.5 43 134-177 9-51 (197)
346 TIGR02881 spore_V_K stage V sp 80.7 1.3 2.7E-05 51.5 3.2 31 147-177 40-70 (261)
347 PRK09112 DNA polymerase III su 80.6 2 4.3E-05 52.1 5.0 40 136-175 31-71 (351)
348 TIGR01026 fliI_yscN ATPase Fli 80.6 2.8 6.1E-05 52.2 6.4 40 133-172 147-186 (440)
349 TIGR00960 3a0501s02 Type II (G 80.6 1.1 2.5E-05 50.1 2.7 27 147-173 27-53 (216)
350 COG2884 FtsE Predicted ATPase 80.5 1.1 2.4E-05 49.0 2.3 25 148-172 27-51 (223)
351 PRK05416 glmZ(sRNA)-inactivati 80.5 1 2.3E-05 52.9 2.5 21 149-169 6-26 (288)
352 PRK10416 signal recognition pa 80.5 1.5 3.3E-05 52.4 3.9 31 147-177 112-142 (318)
353 PRK04195 replication factor C 80.4 1.6 3.4E-05 55.4 4.1 27 147-173 37-63 (482)
354 cd01124 KaiC KaiC is a circadi 80.4 1.3 2.8E-05 48.1 3.0 27 151-177 1-27 (187)
355 TIGR01166 cbiO cobalt transpor 80.4 1.2 2.6E-05 48.9 2.8 26 147-172 16-41 (190)
356 PF08614 ATG16: Autophagy prot 80.4 17 0.00038 40.3 11.9 66 972-1037 115-180 (194)
357 TIGR02546 III_secr_ATP type II 80.3 2.6 5.6E-05 52.4 5.9 38 136-173 132-169 (422)
358 TIGR02868 CydC thiol reductant 80.3 0.7 1.5E-05 59.1 1.1 31 147-177 359-389 (529)
359 cd02034 CooC The accessory pro 80.2 1.6 3.4E-05 44.4 3.3 25 152-176 2-26 (116)
360 PF00308 Bac_DnaA: Bacterial d 80.2 2.3 5E-05 48.1 5.0 42 135-176 18-61 (219)
361 cd03225 ABC_cobalt_CbiO_domain 80.2 1.2 2.7E-05 49.6 2.8 27 147-173 25-51 (211)
362 TIGR02788 VirB11 P-type DNA tr 80.2 0.93 2E-05 53.9 2.0 25 149-173 144-168 (308)
363 PRK14963 DNA polymerase III su 80.2 1.7 3.8E-05 55.1 4.4 55 118-175 6-62 (504)
364 PRK08356 hypothetical protein; 80.1 1 2.2E-05 49.8 2.2 22 150-171 6-27 (195)
365 cd03260 ABC_PstB_phosphate_tra 80.1 1.1 2.3E-05 50.7 2.4 27 147-173 24-50 (227)
366 PRK08116 hypothetical protein; 80.0 2.7 5.8E-05 49.1 5.6 47 130-176 94-141 (268)
367 PRK14959 DNA polymerase III su 80.0 1.9 4.2E-05 55.6 4.8 55 117-175 7-64 (624)
368 COG3883 Uncharacterized protei 80.0 1.3E+02 0.0027 35.1 21.7 64 883-950 39-102 (265)
369 PRK15079 oligopeptide ABC tran 80.0 1.2 2.5E-05 53.7 2.7 27 147-173 45-71 (331)
370 PRK15177 Vi polysaccharide exp 79.9 1.2 2.7E-05 49.9 2.8 27 147-173 11-37 (213)
371 PF04665 Pox_A32: Poxvirus A32 79.9 1.2 2.6E-05 50.9 2.6 26 150-175 14-39 (241)
372 PRK09473 oppD oligopeptide tra 79.9 1.1 2.4E-05 53.8 2.5 27 147-173 40-66 (330)
373 PF00005 ABC_tran: ABC transpo 79.9 1.1 2.4E-05 46.0 2.2 26 148-173 10-35 (137)
374 PRK12608 transcription termina 79.7 1.6 3.6E-05 52.8 3.8 42 134-175 118-159 (380)
375 KOG0978 E3 ubiquitin ligase in 79.7 2.2E+02 0.0047 37.6 37.2 45 1010-1054 575-619 (698)
376 PF15397 DUF4618: Domain of un 79.7 1.3E+02 0.0028 35.0 26.1 34 1020-1053 191-224 (258)
377 cd03259 ABC_Carb_Solutes_like 79.6 1.3 2.8E-05 49.5 2.8 27 147-173 24-50 (213)
378 TIGR00678 holB DNA polymerase 79.6 2.3 5E-05 46.6 4.7 36 140-175 4-40 (188)
379 PRK05922 type III secretion sy 79.6 1.6 3.4E-05 54.0 3.7 42 132-173 140-181 (434)
380 PRK04220 2-phosphoglycerate ki 79.6 2 4.4E-05 50.6 4.4 27 147-173 90-116 (301)
381 PRK06835 DNA replication prote 79.5 3 6.6E-05 50.1 6.0 29 148-176 182-210 (329)
382 COG2433 Uncharacterized conser 79.5 15 0.00034 46.3 11.9 26 1020-1045 479-504 (652)
383 PRK06921 hypothetical protein; 79.4 1.8 3.9E-05 50.5 3.9 29 148-176 116-144 (266)
384 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.4 1.3 2.8E-05 49.6 2.8 27 147-173 28-54 (218)
385 PRK14528 adenylate kinase; Pro 79.4 1.4 3.1E-05 48.3 3.0 24 150-173 2-25 (186)
386 TIGR03608 L_ocin_972_ABC putat 79.3 1.3 2.9E-05 49.1 2.7 27 147-173 22-48 (206)
387 PRK14962 DNA polymerase III su 79.3 2.5 5.4E-05 53.3 5.4 53 118-174 6-61 (472)
388 PRK13768 GTPase; Provisional 79.2 1.5 3.3E-05 50.7 3.2 27 151-177 4-30 (253)
389 COG1123 ATPase components of v 79.2 1.3 2.8E-05 55.9 2.7 29 147-175 315-343 (539)
390 PRK11022 dppD dipeptide transp 79.2 1.3 2.8E-05 53.2 2.7 28 147-174 31-58 (326)
391 PRK14950 DNA polymerase III su 79.1 2.4 5.3E-05 54.9 5.4 55 118-175 8-64 (585)
392 TIGR00455 apsK adenylylsulfate 79.1 2.2 4.8E-05 46.6 4.3 29 147-175 16-44 (184)
393 PRK06936 type III secretion sy 79.1 1.8 3.9E-05 53.6 3.9 41 133-173 146-186 (439)
394 COG1382 GimC Prefoldin, chaper 79.1 31 0.00068 35.1 11.9 39 1011-1049 73-111 (119)
395 PF14197 Cep57_CLD_2: Centroso 79.1 18 0.00039 33.3 9.4 64 978-1041 3-66 (69)
396 PRK00698 tmk thymidylate kinas 79.1 1.8 4E-05 47.7 3.7 28 149-176 3-30 (205)
397 KOG0963 Transcription factor/C 79.1 2E+02 0.0044 37.0 27.5 81 972-1052 181-265 (629)
398 PRK14970 DNA polymerase III su 79.1 3 6.6E-05 50.8 6.0 58 116-175 7-65 (367)
399 PF00625 Guanylate_kin: Guanyl 79.0 1.5 3.2E-05 47.9 2.9 26 149-174 2-27 (183)
400 cd03229 ABC_Class3 This class 79.0 1.4 3.1E-05 47.8 2.8 27 147-173 24-50 (178)
401 cd03296 ABC_CysA_sulfate_impor 79.0 1.4 3E-05 50.3 2.8 27 147-173 26-52 (239)
402 PF12325 TMF_TATA_bd: TATA ele 78.9 24 0.00052 36.1 11.2 33 1013-1045 73-105 (120)
403 cd03116 MobB Molybdenum is an 78.9 1.8 3.9E-05 46.4 3.5 28 150-177 2-29 (159)
404 TIGR02880 cbbX_cfxQ probable R 78.9 1.5 3.2E-05 51.7 3.0 28 151-178 60-87 (284)
405 PF00158 Sigma54_activat: Sigm 78.9 1.2 2.7E-05 48.1 2.2 25 147-171 20-44 (168)
406 PF03193 DUF258: Protein of un 78.8 1.6 3.4E-05 47.0 2.9 25 148-172 34-58 (161)
407 PF05622 HOOK: HOOK protein; 78.8 0.64 1.4E-05 61.7 0.0 60 977-1036 360-419 (713)
408 cd01983 Fer4_NifH The Fer4_Nif 78.7 1.8 4E-05 40.8 3.2 25 152-176 2-26 (99)
409 KOG2129 Uncharacterized conser 78.7 1.7E+02 0.0036 35.7 22.5 30 976-1005 249-278 (552)
410 PRK13341 recombination factor 78.7 2.3 4.9E-05 56.3 4.9 36 138-173 41-76 (725)
411 COG2274 SunT ABC-type bacterio 78.6 0.94 2E-05 59.6 1.4 32 147-178 497-528 (709)
412 PF13479 AAA_24: AAA domain 78.6 1.2 2.7E-05 49.9 2.2 23 147-169 1-23 (213)
413 KOG2991 Splicing regulator [RN 78.6 1.3E+02 0.0028 34.4 26.3 22 1013-1034 283-304 (330)
414 TIGR01359 UMP_CMP_kin_fam UMP- 78.5 1.4 3.1E-05 47.8 2.6 23 152-174 2-24 (183)
415 cd03235 ABC_Metallic_Cations A 78.5 1.3 2.9E-05 49.4 2.5 27 147-173 23-49 (213)
416 cd03258 ABC_MetN_methionine_tr 78.4 1 2.2E-05 51.1 1.5 27 147-173 29-55 (233)
417 cd03292 ABC_FtsE_transporter F 78.3 1.5 3.2E-05 49.0 2.7 27 147-173 25-51 (214)
418 PRK06305 DNA polymerase III su 78.3 3 6.4E-05 52.4 5.6 56 118-175 9-65 (451)
419 KOG0056 Heavy metal exporter H 78.2 1.8 3.9E-05 52.9 3.4 41 148-188 563-603 (790)
420 KOG0995 Centromere-associated 78.2 2.1E+02 0.0045 36.6 34.0 25 800-824 265-289 (581)
421 TIGR02640 gas_vesic_GvpN gas v 78.2 2.7 5.9E-05 48.8 5.0 42 129-173 4-45 (262)
422 PLN02796 D-glycerate 3-kinase 78.1 1.4 3.1E-05 52.7 2.7 24 151-174 102-125 (347)
423 PRK08154 anaerobic benzoate ca 78.1 2.6 5.6E-05 50.2 4.9 48 126-173 106-157 (309)
424 PF01695 IstB_IS21: IstB-like 78.1 2.8 6E-05 45.8 4.7 30 147-176 45-74 (178)
425 TIGR03497 FliI_clade2 flagella 78.0 4.1 8.8E-05 50.4 6.6 36 138-173 126-161 (413)
426 COG2805 PilT Tfp pilus assembl 77.9 1.6 3.5E-05 50.8 2.8 78 87-175 70-151 (353)
427 PRK05201 hslU ATP-dependent pr 77.9 3.9 8.5E-05 50.3 6.2 61 113-173 5-74 (443)
428 cd02026 PRK Phosphoribulokinas 77.8 1.5 3.2E-05 51.3 2.6 22 152-173 2-23 (273)
429 PRK14958 DNA polymerase III su 77.7 2.9 6.4E-05 53.2 5.4 55 117-175 7-64 (509)
430 PRK05537 bifunctional sulfate 77.7 2.1 4.6E-05 55.1 4.2 44 130-175 375-418 (568)
431 PF12325 TMF_TATA_bd: TATA ele 77.6 66 0.0014 33.0 13.9 10 986-995 74-83 (120)
432 COG0802 Predicted ATPase or ki 77.5 3.8 8.2E-05 43.3 5.2 29 147-175 23-51 (149)
433 cd03224 ABC_TM1139_LivF_branch 77.5 1.6 3.6E-05 48.9 2.8 26 147-172 24-49 (222)
434 KOG0922 DEAH-box RNA helicase 77.5 2.4 5.1E-05 53.9 4.3 40 132-177 52-91 (674)
435 TIGR03864 PQQ_ABC_ATP ABC tran 77.5 1.6 3.5E-05 49.6 2.8 27 147-173 25-51 (236)
436 PRK11176 lipid transporter ATP 77.5 1.3 2.7E-05 57.6 2.1 29 147-175 367-395 (582)
437 PF06160 EzrA: Septation ring 77.4 2.4E+02 0.0051 36.8 28.2 20 886-905 105-124 (560)
438 cd03297 ABC_ModC_molybdenum_tr 77.4 1.6 3.5E-05 48.8 2.7 26 147-173 22-47 (214)
439 cd03256 ABC_PhnC_transporter A 77.3 1.6 3.5E-05 49.6 2.8 27 147-173 25-51 (241)
440 PRK00023 cmk cytidylate kinase 77.3 1.7 3.6E-05 49.4 2.8 26 149-174 4-29 (225)
441 cd03223 ABCD_peroxisomal_ALDP 77.2 1.7 3.8E-05 46.7 2.8 27 147-173 25-51 (166)
442 smart00072 GuKc Guanylate kina 77.2 1.5 3.4E-05 47.9 2.4 23 151-173 4-26 (184)
443 PRK10436 hypothetical protein; 77.2 1.6 3.4E-05 54.8 2.7 35 139-174 209-243 (462)
444 PRK11124 artP arginine transpo 77.2 1.7 3.6E-05 49.7 2.8 26 147-172 26-51 (242)
445 PRK05563 DNA polymerase III su 77.1 2.9 6.3E-05 53.9 5.2 56 118-176 8-65 (559)
446 TIGR02315 ABC_phnC phosphonate 77.1 1.7 3.6E-05 49.6 2.8 27 147-173 26-52 (243)
447 PRK14531 adenylate kinase; Pro 77.1 1.9 4.1E-05 47.2 3.0 25 150-174 3-27 (183)
448 cd03268 ABC_BcrA_bacitracin_re 77.0 1.7 3.8E-05 48.3 2.8 27 147-173 24-50 (208)
449 COG4088 Predicted nucleotide k 77.0 2.5 5.3E-05 46.7 3.7 26 151-176 3-28 (261)
450 KOG0982 Centrosomal protein Nu 76.9 1.9E+02 0.0041 35.5 22.0 31 1020-1050 358-388 (502)
451 KOG4460 Nuclear pore complex, 76.9 2.1E+02 0.0046 36.1 21.2 27 972-998 661-687 (741)
452 cd03266 ABC_NatA_sodium_export 76.8 1.8 3.8E-05 48.6 2.8 25 147-171 29-53 (218)
453 TIGR01184 ntrCD nitrate transp 76.7 1.8 3.8E-05 49.2 2.8 27 147-173 9-35 (230)
454 PRK10646 ADP-binding protein; 76.7 4 8.7E-05 43.5 5.2 26 149-174 28-53 (153)
455 TIGR00382 clpX endopeptidase C 76.6 3.9 8.4E-05 50.5 5.9 63 111-173 65-140 (413)
456 cd04508 TUDOR Tudor domains ar 76.6 5.4 0.00012 33.3 5.1 43 10-52 1-46 (48)
457 cd03265 ABC_DrrA DrrA is the A 76.6 1.8 3.9E-05 48.6 2.8 25 147-171 24-48 (220)
458 PRK10908 cell division protein 76.6 1.8 3.9E-05 48.7 2.8 26 147-172 26-51 (222)
459 TIGR03574 selen_PSTK L-seryl-t 76.6 1.7 3.8E-05 49.9 2.7 24 152-175 2-25 (249)
460 COG4619 ABC-type uncharacteriz 76.5 1.7 3.6E-05 46.6 2.2 24 148-171 28-51 (223)
461 PRK13539 cytochrome c biogenes 76.5 1.8 4E-05 48.2 2.8 26 147-172 26-51 (207)
462 PF05010 TACC: Transforming ac 76.5 1.4E+02 0.003 33.7 22.9 23 922-944 77-99 (207)
463 PF01580 FtsK_SpoIIIE: FtsK/Sp 76.5 1.8 3.9E-05 48.0 2.8 26 151-176 40-65 (205)
464 TIGR00972 3a0107s01c2 phosphat 76.5 1.8 3.9E-05 49.6 2.8 27 147-173 25-51 (247)
465 cd03219 ABC_Mj1267_LivG_branch 76.4 1.7 3.7E-05 49.3 2.6 27 147-173 24-50 (236)
466 PRK12704 phosphodiesterase; Pr 76.3 1E+02 0.0022 39.6 18.4 122 923-1056 30-151 (520)
467 PF14532 Sigma54_activ_2: Sigm 76.3 1.1 2.4E-05 46.6 0.9 25 147-171 19-43 (138)
468 cd03269 ABC_putative_ATPase Th 76.3 1.9 4.1E-05 48.1 2.8 26 147-172 24-49 (210)
469 PF07106 TBPIP: Tat binding pr 76.3 28 0.0006 37.7 11.7 66 971-1036 70-137 (169)
470 PRK03839 putative kinase; Prov 76.2 1.9 4E-05 46.9 2.7 23 151-173 2-24 (180)
471 cd03226 ABC_cobalt_CbiO_domain 76.2 1.8 3.9E-05 48.1 2.7 26 147-172 24-49 (205)
472 PHA02530 pseT polynucleotide k 76.2 1.7 3.7E-05 51.2 2.6 24 150-173 3-26 (300)
473 cd03245 ABCC_bacteriocin_expor 76.2 1.9 4E-05 48.5 2.8 26 147-172 28-53 (220)
474 TIGR03410 urea_trans_UrtE urea 76.2 1.2 2.7E-05 50.3 1.3 28 147-174 24-51 (230)
475 cd03230 ABC_DR_subfamily_A Thi 76.2 1.9 4.1E-05 46.6 2.8 26 147-172 24-49 (173)
476 cd03262 ABC_HisP_GlnQ_permease 76.2 1.9 4.1E-05 48.1 2.8 27 147-173 24-50 (213)
477 TIGR01978 sufC FeS assembly AT 76.1 1.8 4E-05 49.3 2.7 26 147-172 24-49 (243)
478 PRK02496 adk adenylate kinase; 76.0 1.9 4.2E-05 47.0 2.8 22 152-173 4-25 (184)
479 cd03270 ABC_UvrA_I The excisio 76.0 1.9 4.1E-05 48.9 2.8 24 147-170 19-42 (226)
480 PRK06526 transposase; Provisio 76.0 2.2 4.7E-05 49.4 3.3 29 148-176 97-125 (254)
481 PRK10584 putative ABC transpor 76.0 1.9 4.1E-05 48.7 2.8 27 147-173 34-60 (228)
482 TIGR00634 recN DNA repair prot 76.0 2.5E+02 0.0055 36.5 22.8 9 713-721 105-113 (563)
483 COG1474 CDC6 Cdc6-related prot 75.9 2.9 6.2E-05 51.0 4.5 38 140-177 33-70 (366)
484 TIGR03319 YmdA_YtgF conserved 75.9 1.3E+02 0.0029 38.6 19.2 127 918-1056 19-145 (514)
485 PF13604 AAA_30: AAA domain; P 75.9 3.5 7.6E-05 45.7 4.8 38 138-176 8-45 (196)
486 PRK11248 tauB taurine transpor 75.9 1.9 4.1E-05 49.8 2.8 27 147-173 25-51 (255)
487 PRK05439 pantothenate kinase; 75.9 4 8.8E-05 48.5 5.5 32 145-176 82-113 (311)
488 PRK13541 cytochrome c biogenes 75.8 2 4.3E-05 47.4 2.8 27 147-173 24-50 (195)
489 PRK07960 fliI flagellum-specif 75.8 6.4 0.00014 49.0 7.3 42 132-173 158-199 (455)
490 PRK07133 DNA polymerase III su 75.7 3.2 6.8E-05 54.5 4.9 57 117-175 9-66 (725)
491 PRK14960 DNA polymerase III su 75.6 3.1 6.7E-05 53.8 4.7 54 118-175 7-63 (702)
492 cd01672 TMPK Thymidine monopho 75.6 2.2 4.9E-05 46.5 3.2 24 152-175 3-26 (200)
493 TIGR02211 LolD_lipo_ex lipopro 75.5 2 4.3E-05 48.3 2.8 26 147-172 29-54 (221)
494 TIGR02397 dnaX_nterm DNA polym 75.5 4.5 9.8E-05 48.8 6.1 57 116-173 4-60 (355)
495 PRK12323 DNA polymerase III su 75.5 3 6.5E-05 53.8 4.5 53 118-173 8-62 (700)
496 KOG1970 Checkpoint RAD17-RFC c 75.5 3.3 7.3E-05 51.6 4.8 61 113-173 69-134 (634)
497 PRK06620 hypothetical protein; 75.4 3.4 7.4E-05 46.5 4.6 39 134-172 25-67 (214)
498 cd03222 ABC_RNaseL_inhibitor T 75.3 1.3 2.9E-05 48.3 1.2 32 147-178 23-54 (177)
499 PLN02318 phosphoribulokinase/u 75.3 3 6.6E-05 53.2 4.5 41 133-173 48-89 (656)
500 PRK11629 lolD lipoprotein tran 75.3 2 4.4E-05 48.7 2.8 24 147-170 33-56 (233)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1e-242 Score=2246.22 Aligned_cols=1353 Identities=35% Similarity=0.524 Sum_probs=1057.4
Q ss_pred CccccccCcEEEEeCCCCCeEEEEEEEEc--CCeEEEE--eCCCcEEEEeCCCccC--CCCCCCCCCcCccccCCCCChH
Q 000468 3 APVNIIVGSHVWVEHPELAWVDGEVFKIS--AEEVHVH--TTNGQTVITNISKVFP--KDTEAPPGGVDDMTKLSYLHEP 76 (1473)
Q Consensus 3 ~~~~~~~g~~vwv~~~~~~w~~~~v~~~~--~~~~~v~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~Dl~~L~~l~E~ 76 (1473)
+..++.+|..||+||.+.+|+.|.|.+.+ ++.++.. ..+|..+.++...+-. .++| ..+++||||.|+|||||
T Consensus 2 ~~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P-~~~~vdDLt~LSyLNEp 80 (1463)
T COG5022 2 STTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLP-KFDGVDDLTELSYLNEP 80 (1463)
T ss_pred CccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCc-cccCchhhhhhhccCcH
Confidence 34578999999999999999999999743 3333322 2355444444432221 1111 35899999999999999
Q ss_pred HHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecC
Q 000468 77 GVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSG 156 (1473)
Q Consensus 77 ~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisG 156 (1473)
+|||||++||.++.||||+|.||||||||+.|| ||++++|+.|++++..+++|||||||++||+.|...++||||||||
T Consensus 81 sVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISG 159 (1463)
T COG5022 81 AVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISG 159 (1463)
T ss_pred HHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEec
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEEEcCCCcccceeeee
Q 000468 157 ESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRT 236 (1473)
Q Consensus 157 ESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~Ga~i~t 236 (1473)
||||||||+||+||+|||++++.++....+||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+|
T Consensus 160 ESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~ 239 (1463)
T COG5022 160 ESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIET 239 (1463)
T ss_pred CCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhh
Confidence 99999999999999999999987766667899999999999999999999999999999999999999999999999999
Q ss_pred eeccCccccccCCCCccceeecccccC-ChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhchhhcccCHHH
Q 000468 237 YLLERSRVCQISDPERNYHCFYLLCAA-PPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEE 315 (1473)
Q Consensus 237 yLLEksRvv~q~~~ERNfHIFYql~~~-~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~e 315 (1473)
|||||||||+|+.+|||||||||||++ ++..++.+++..|.+|.||++|+|..++||||+++|..|+.||+++||+.++
T Consensus 240 YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~ee 319 (1463)
T COG5022 240 YLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEE 319 (1463)
T ss_pred hhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHH
Confidence 999999999999999999999999995 5555566677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEeCCceEEccCChhhHhh
Q 000468 316 QDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVG 395 (1473)
Q Consensus 316 ~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~~a~~ 395 (1473)
|..||+|||||||||||+|..+++ +.+.+.+. +.++.||.|||||++.|.+||++|.|.+++|.|.+|++..||..
T Consensus 320 q~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ 395 (1463)
T COG5022 320 QDQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALA 395 (1463)
T ss_pred HHHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHH
Confidence 999999999999999999998654 44444443 36999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhhhhchhhhhhhhhhhhhhhhHhhhh
Q 000468 396 SRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYT 475 (1473)
Q Consensus 396 ~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~ 475 (1473)
+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.
T Consensus 396 irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~ 475 (1463)
T COG5022 396 IRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYV 475 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877778999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccccccchHHHHHHhhc-CCCccccchhhhccCCCCchHHHHHHHHHHhc--CCCCCCCCCCCCCceEEEeccc
Q 000468 476 KEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKRFIKPKLSRTSFTISHYAG 552 (1473)
Q Consensus 476 ~EgI~w~~i~f~dN~~~idlie~-k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~f~~p~~~~~~F~I~Hyag 552 (1473)
+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++|.+||++.+. +++.|.+||+....|+|.||||
T Consensus 476 kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAg 555 (1463)
T COG5022 476 KEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAG 555 (1463)
T ss_pred HhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecc
Confidence 99999999999999999999997 25699999999999999999999999999986 5678999999999999999999
Q ss_pred ceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHccCCCeeEEecC
Q 000468 553 EVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVK 632 (1473)
Q Consensus 553 ~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIk 632 (1473)
+|+|+++||++||||++++++++|+.+|+|+||+.||++..+..+ .++++|+|++||.||.+||.+|++|+||||||||
T Consensus 556 DVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~-K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIk 634 (1463)
T COG5022 556 DVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIES-KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIK 634 (1463)
T ss_pred cceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhccc-cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeC
Confidence 999999999999999999999999999999999999995443333 3688999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCccCC-----CCchHHHHHHHHHhcCC
Q 000468 633 PNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-----NYDDKVACEKILDKMGL 707 (1473)
Q Consensus 633 PN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-----~~~~~~~~~~il~~~~~ 707 (1473)
||..|+|+.||+.+|++|||||||||+|||+|+|||+||+|++|+.||++|.|..... ..|.+.+|..||..+.+
T Consensus 635 PN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~i 714 (1463)
T COG5022 635 PNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVI 714 (1463)
T ss_pred CCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999974321 24578999999999876
Q ss_pred C--CcccccceeeeccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchhhHHHHHHHhH
Q 000468 708 K--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREA 785 (1473)
Q Consensus 708 ~--~~~iG~TkVFlr~~~~~~LE~~R~~~l~~aa~~IQk~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~~~r~~~ 785 (1473)
+ .||+|+||||||+|+++.||.+|...++.+++.||+.|||++.|++|.+..+.+..+|...+|++.|+.+..---..
T Consensus 715 d~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~ 794 (1463)
T COG5022 715 DSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWR 794 (1463)
T ss_pred ChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHH
Confidence 6 59999999999999999999999999999999999999999999999999999999999999999998876666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000468 786 AALKIQKNFHSYTARTSYLTARSSAIQLQ-TGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCG 864 (1473)
Q Consensus 786 AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQ-s~~Rg~~aRr~~~~lk~~~AAv~IQa~~R~~~~r~~y~~~~ka~i~iQ~~ 864 (1473)
+++.+|..||....|+.|...-..++.+| ..+|....+.........++++.+|+.||....+++|..+.+.++.+|+.
T Consensus 795 ~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~ 874 (1463)
T COG5022 795 LFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSA 874 (1463)
T ss_pred hHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999 66677776666667777899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 865 WRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRI 944 (1473)
Q Consensus 865 ~R~~~arkel~~Lk~~a~e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l 944 (1473)
+|...|++++..++.+.+++.++...+..|+.++.++...++.....+..... .....++..++..
T Consensus 875 ~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~k~---e~~a~lk~~l~~~----------- 940 (1463)
T COG5022 875 QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKT---ELIARLKKLLNNI----------- 940 (1463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHHHH---HHHHHHHHHhhcc-----------
Confidence 99999999999999999999999999999999999998876642211111110 1111122211110
Q ss_pred HHHHHHHHHHHHhCCCccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000468 945 LKEQEAARKAIEEAPPIVKETPVIV-HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEK 1023 (1473)
Q Consensus 945 ~~e~e~~~~~~ee~~~~~~e~~~l~-~~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~e 1023 (1473)
+++ +.+..+ ....++..|..+..+++....+...-+ ++......+......++....++
T Consensus 941 ---------d~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----k~~~~~~~~~~~~~~el~~~~~~ 1000 (1463)
T COG5022 941 ---------DLE-------EGPSIEYVKLPELNKLHEVESKLKETSEEYEDLL----KKSTILVREGNKANSELKNFKKE 1000 (1463)
T ss_pred ---------ccc-------chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHhcccHHHHHHHHHHH
Confidence 000 000000 001133444444444444332222111 11111111111111222222222
Q ss_pred HHHHHHHHHHHHHHHHhhHHH---HHHHHHHHhhcCCCCcccccCcchhhhccCCCCCCCCCCCcccCccccccccCCCC
Q 000468 1024 VGQLQESMQRLEEKLCNSESE---NQVIRQQALAMSPTGKSLSARPKTLVIQRTPENGNVQNGEMKVTPDVTLAVTSARE 1100 (1473)
Q Consensus 1024 l~~L~~~~~~Leekl~ele~e---n~~L~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1100 (1473)
+.....+...+.++..+++.. +..+....... +........ ..+... +.+ . .... . ..
T Consensus 1001 l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~----~s~~~~~~~----~~~~~~-~~~-~---~~~~--~----~~ 1061 (1463)
T COG5022 1001 LAELSKQYGALQESTKQLKELPVEVAELQSASKII----SSESTELSI----LKPLQK-LKG-L---LLLE--N----NQ 1061 (1463)
T ss_pred HHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhh----ccchhhhhc----cCcccc-hhh-h---hhHH--H----HH
Confidence 222222222222222222221 22222211100 000000000 000000 000 0 0000 0 00
Q ss_pred CCccc---cccc---cchhHh---hhcHHHHHhhhc-CCCCCcCC-ccchH-HHHHHHHhhhcc-hhhhhhHHHHHHHHH
Q 000468 1101 PESEE---KPQK---SLNEKQ---QENQDLLIKCVS-QNLGFSRS-KPVAA-SVIYKCLLHWRS-FEVERTTVFDRIIQT 1167 (1473)
Q Consensus 1101 ~~~~~---~~~~---~~~e~~---~en~d~lik~l~-~~~gf~~~-kP~~A-~iif~cl~~w~~-~~~e~~~l~~~vi~~ 1167 (1473)
.+.+. ...| ...+.+ .+..+-+.+.+. +++-+.+. -+-|| .+.|...-+|++ ...+...++...+..
T Consensus 1062 l~~~~~~l~~~r~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~ 1141 (1463)
T COG5022 1062 LQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNT 1141 (1463)
T ss_pred hhhhHhhhhhcCcccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhh
Confidence 00000 0000 111111 112222333332 22222111 11133 444445558987 656667777777777
Q ss_pred HHHHHhc---cCCCccceeehHhHHHHHHHHHHHhhhcCCCCCC-ccccccccchhhhccccccCCCCCCCCcccccCCC
Q 000468 1168 IASAIEV---QDNNDVLAYWLSNSSTLLLLLQHTLKASGAASLT-PQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRG 1243 (1473)
Q Consensus 1168 I~~~i~~---~~~~~~layWLSNt~~Ll~llq~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1473)
++.+... .+-.-.+-||.+|...++.. .....+ +.+-. .+..+.+.+
T Consensus 1142 le~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~------------------~~~~~d~~~--- 1192 (1463)
T COG5022 1142 LEPVFQKLSVLQLELDGLFWEANLEALPSP--------PPFAALSEKRLY------------------QSALYDEKS--- 1192 (1463)
T ss_pred ccchhccccchhccccccccccccccCCCC--------Cchhhcchhhhh------------------Hhhhhcccc---
Confidence 7766553 23334677999999987620 000000 00000 000000000
Q ss_pred ccccchhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcC--CCCCccccccCCCcchhhhhhhhhHh
Q 000468 1244 LGRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLCIQA--PRTSRASLVKGRSQANAVAQQALIAH 1321 (1473)
Q Consensus 1244 ~~~~~~~~~v~~~~p~~~fkqqL~~~~~~iy~~l~~~~kk~l~p~L~~~I~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 1321 (1473)
.+..+++ -..+..+..+..++|+.|.... ++.+.+...+-. .....+++. .++..+..+...+
T Consensus 1193 ~~s~s~v---------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 1257 (1463)
T COG5022 1193 KLSSSEV---------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNKKFDTPASMS 1257 (1463)
T ss_pred cccHHHH---------HHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhhcccCcccCc
Confidence 0011111 1346889999999999997654 344443222100 011111111 0112233345667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCccchhHHhhchHHHHHHHhhhccccccc
Q 000468 1322 WQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGS 1401 (1473)
Q Consensus 1322 ~~~il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~~In~~~fN~LllRr~~Cs~s~G~qIr~nls~Le~W~~~~~~~~~~~ 1401 (1473)
.++++.+++.+++.++.+.+.+++....++++..++|+.+||.|-+|+.--+|+.|.++.||.+.+++||+.++ ...
T Consensus 1258 ~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~ 1334 (1463)
T COG5022 1258 NEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISD 1334 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999987 455
Q ss_pred hHhhhHhHHHHHHhHhcccCCcCCHHHHHhccCCCCCHHHHHHHHhcCccCCCCCcccCcccc
Q 000468 1402 AWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVS 1464 (1473)
Q Consensus 1402 a~~~L~~l~QA~~lL~~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~y~~~~is~~v~ 1464 (1473)
+-.+|++++||++.+++.+++..+++++ .+.|.+|+|.||++|+.+|.+.+|++ ++|.++.
T Consensus 1335 ~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e~-~l~ke~~ 1395 (1463)
T COG5022 1335 VDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKEN-NLPKEIL 1395 (1463)
T ss_pred hHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhcccC-CChHHHH
Confidence 6689999999999999999888888777 68999999999999999999999987 9999887
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.4e-207 Score=1951.06 Aligned_cols=769 Identities=36% Similarity=0.576 Sum_probs=715.7
Q ss_pred ccccccCcEEEE-------eCCCCCeEEEEEE-EEcCCeEEEEe---CCCcEEEEeCCCccCCCCCCCCCCcCccccCCC
Q 000468 4 PVNIIVGSHVWV-------EHPELAWVDGEVF-KISAEEVHVHT---TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSY 72 (1473)
Q Consensus 4 ~~~~~~g~~vwv-------~~~~~~w~~~~v~-~~~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~ 72 (1473)
+.++.+|+.||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.+++.++.+++||+.|+|
T Consensus 27 ~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 27 SGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCC
Confidence 456779999998 6789999999999 78899888874 578999999999999998777789999999999
Q ss_pred CChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhcc-CCCCCCchHHHHHHHHHHHHHhcCCCeE
Q 000468 73 LHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGA-QFGELSPHVFAIADVAYRAMINEGKSNS 151 (1473)
Q Consensus 73 l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~-~~~~~~PHifavA~~Ay~~m~~~~~~Qs 151 (1473)
||||+|||||+.||..+.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999998 9999999999985 5688999999999999999999999999
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEEEcCCCcccc
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISG 231 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~G 231 (1473)
|||||||||||||+||+||+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999987532 2357999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhchhhcc
Q 000468 232 AAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVG 310 (1473)
Q Consensus 232 a~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~~~~~Al~~lg 310 (1473)
|+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|+.++|+||+++|.+|+.||++||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 7889999999999999999995 5889999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCceEEecCC---CCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEeCCceEEcc
Q 000468 311 ISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRT 387 (1473)
Q Consensus 311 ~~~~e~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~ 387 (1473)
|+++++.+||+|||||||||||+|.+... .|++.+.+ .+...+..||+|||||+++|.++||+|++.++++.+++|
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~-~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISD-ESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccC-CCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 24555543 234579999999999999999999999999999999999
Q ss_pred CChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhhhhchhhhhhhhhhhhh
Q 000468 388 LDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVF 467 (1473)
Q Consensus 388 l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf 467 (1473)
++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+|||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF 501 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766778999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCCCCC-CCCceE
Q 000468 468 KMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL-SRTSFT 546 (1473)
Q Consensus 468 ~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~-~~~~F~ 546 (1473)
+.||++|.+|||+|++|+|.||++||||||+||.|||++|||||++|+|||++|++||+++|++|++|.+|+. ....|+
T Consensus 502 ~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~ 581 (821)
T PTZ00014 502 ERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFV 581 (821)
T ss_pred HHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 457999
Q ss_pred EEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHccCCCe
Q 000468 547 ISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPH 626 (1473)
Q Consensus 547 I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~Lm~~l~~t~~h 626 (1473)
|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+|||++||.||+.||++|++|+||
T Consensus 582 I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ph 661 (821)
T PTZ00014 582 IKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPH 661 (821)
T ss_pred EEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999998754333334466899999999999999999999999
Q ss_pred eEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCccC-CCCchHHHHHHHHHhc
Q 000468 627 YIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYDDKVACEKILDKM 705 (1473)
Q Consensus 627 fIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~ 705 (1473)
||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+.... ...|+++.|+.||+.+
T Consensus 662 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~ 741 (821)
T PTZ00014 662 FIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERS 741 (821)
T ss_pred EEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999887543 2358899999999998
Q ss_pred CC--CCcccccceeeeccchhhHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchhhH
Q 000468 706 GL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKL 777 (1473)
Q Consensus 706 ~~--~~~~iG~TkVFlr~~~~~~LE~~R~~~l~---~aa~~IQk~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~ 777 (1473)
++ +.|++|+||||||+|+++.||.+|.+++. .+++.||++||+|++|++|++.+.+++.||+.|||+++++.
T Consensus 742 ~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 742 GLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred CCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 58999999999999999999999887764 58889999999999999998888888888888888777653
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.7e-192 Score=1794.38 Aligned_cols=674 Identities=87% Similarity=1.337 Sum_probs=648.1
Q ss_pred CCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHH
Q 000468 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1473)
Q Consensus 62 ~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 141 (1473)
+|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+|++|++++|..|+++..+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEE
Q 000468 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1473)
Q Consensus 142 ~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l 221 (1473)
+|.+.++||||||||||||||||++|++|+|||.+++..+....+|+++|+++||||||||||||+|||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555557899999999999999999999999999999999999
Q ss_pred EEcCCCcccceeeeeeeccCccccccCCCCccceeecccccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000468 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1473)
Q Consensus 222 ~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~~ 301 (1473)
+||.+|.|+||+|.+|||||||||.|++||||||||||||+++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEeCC
Q 000468 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1473)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1473)
|+.||+.|||+++++..||+|||||||||||+|.+..+.|++.+.+..+...+..||+||||+.++|.++|++|++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666654456789999999999999999999999999999
Q ss_pred ceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhhhhchhhhhhh
Q 000468 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQH 461 (1473)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~ 461 (1473)
+.+++|+++++|.++||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||||||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998777789999999999999999999999999999999999
Q ss_pred hhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCCCCCC
Q 000468 462 FNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS 541 (1473)
Q Consensus 462 f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~~ 541 (1473)
||+|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHc
Q 000468 542 RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1473)
Q Consensus 542 ~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~Lm~~l~ 621 (1473)
+..|+|+||||+|+|+++||++||||.++++++++|++|+|++|+.||+..+..+.+.++++||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987665544555778999999999999999999
Q ss_pred cCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCccCCCCchHHHHHHH
Q 000468 622 STEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKI 701 (1473)
Q Consensus 622 ~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~i 701 (1473)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|.......+++..|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766566889999999
Q ss_pred HHhcCCCCcccccceeeeccchhhHHHHHHHHHh
Q 000468 702 LDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVL 735 (1473)
Q Consensus 702 l~~~~~~~~~iG~TkVFlr~~~~~~LE~~R~~~l 735 (1473)
|+.+++++|++|+||||||+|+++.||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-189 Score=1740.41 Aligned_cols=752 Identities=64% Similarity=1.011 Sum_probs=723.1
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHH
Q 000468 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1473)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1473)
|+.|+|||+.|+|||||+|||||+.||..+.||||+|++|||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEE
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~ 219 (1473)
|+.|..++.|||||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999986 34578999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeeeccCccccccCCCCccceeecccccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000468 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1473)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f 299 (1473)
+|+||.+|+|+||.|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+++|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995449999999999999999999999999999999999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEe
Q 000468 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1473)
Q Consensus 300 ~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1473)
..|+.||..+||+.++|+.||++||||||||||+|..+.+.+++...++ ++..+|+|||++.+.|..||++|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998776555554442 799999999999999999999999999
Q ss_pred CCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhcccccc-CCCCCeEEEeecccccccCCCCchhhhhhhhchhhh
Q 000468 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQ-DPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1473)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1473)
+++.|+++++..+|...||++||.||++||+|+|+.||.+|+. ++....+||||||||||+|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 455689999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000468 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1473)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1473)
||+||+|||++||++|.+|||+|+.|+|.||++|+|+||+ |.|+++||||||++|.++|++|..||++.+.+|+.|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999997 889999999999999999999999999999999999999
Q ss_pred CCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHH
Q 000468 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 618 (1473)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~Lm~ 618 (1473)
+++++.|+|.||||+|+|++.|||+||||+|++++++++..|+++|+..+|++...++++.++++||+++|+.||..||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997666655566889999999999999999
Q ss_pred HHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCccCCCCchHHHH
Q 000468 619 TLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVAC 698 (1473)
Q Consensus 619 ~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 698 (1473)
+|++|+||||||||||+.+.|+.||..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|+...|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 333 34669999
Q ss_pred HHHHHhcCCCCcccccceeeeccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchhhHH
Q 000468 699 EKILDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLY 778 (1473)
Q Consensus 699 ~~il~~~~~~~~~iG~TkVFlr~~~~~~LE~~R~~~l~~aa~~IQk~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~ 778 (1473)
+.||+.++++.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|.++|++++.||+++||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000468 779 EQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1473)
Q Consensus 779 ~~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aRr 824 (1473)
..+ +..||+.||+.+|+|..|+.|...+.+++.+|+.+|++.+|+
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334 778999999999999999999999999999999999999998
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.8e-186 Score=1815.15 Aligned_cols=774 Identities=44% Similarity=0.731 Sum_probs=710.1
Q ss_pred cccccCcEEEEeCCCCCeEEEEEEEEcCCeEEEEeCCCcEEE-EeCCCccCCCCCCCCCCcCccccCCCCChHHHHHHHH
Q 000468 5 VNIIVGSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVI-TNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLA 83 (1473)
Q Consensus 5 ~~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~E~~vL~~L~ 83 (1473)
..+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|...+ ++.++++|++|| .++.++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 445667899999999999999999987777999998887766 999999999876 567999999999999999999999
Q ss_pred HhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCch
Q 000468 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKT 163 (1473)
Q Consensus 84 ~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKT 163 (1473)
.||.++.||||+|..||+||||+++| ||+++++++|+|+.+.++||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCC---CccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEEEcCCCcccceeeeeeecc
Q 000468 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLE 240 (1473)
Q Consensus 164 es~k~im~yla~~~~~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~Ga~i~tyLLE 240 (1473)
|+||.||+|||++++++... +.+++++|+++||||||||||+|++|||||||||||.|+||..|.|+||.|.+||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 157899999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCccceeeccccc-CChhHHhhcCCCC-CCCCccccCCCccccCCCCcHHHHHHHHhchhhcccCHHHHHH
Q 000468 241 RSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGD-PKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEEQDA 318 (1473)
Q Consensus 241 ksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~-~~~~~yl~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~e~~~ 318 (1473)
||||++|+++||||||||||++ +++.++..|.|.+ +.+|.|+.++.. .+||+||+++|..|..||++|||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7888999999976 899999999887 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEeCCceEEccCChhhHhhhHH
Q 000468 319 IFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVGSRD 398 (1473)
Q Consensus 319 i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~~a~~~rd 398 (1473)
||+|+||||||||+.|......+...+.+ ......+|.||||+.+.|.++++++.+.++++.+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~---~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDN---TEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCC---chHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 99999999999999998764444444433 346899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhhhhchhhhhhhhhhhhhhhhHhhhhhcC
Q 000468 399 ALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEE 478 (1473)
Q Consensus 399 alak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~Eg 478 (1473)
||||++|++||.|||.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999998877778999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHh-cCCCCCCCCC--CCCCceEEEecccce
Q 000468 479 INWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKPK--LSRTSFTISHYAGEV 554 (1473)
Q Consensus 479 I~w~~i~f-~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~p~--~~~~~F~I~Hyag~V 554 (1473)
|.|++|+| .|-|||||||| +|.||||+|||||++|++||.+|+.||+..| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHh-chhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 68899999999 5569999999999999999999999999999 8999999997 456799999999999
Q ss_pred eeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCC-----------CcCCCCCCcchhHHHHHHHHHHHHHHccC
Q 000468 555 TYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNST 623 (1473)
Q Consensus 555 ~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~~~fk~~L~~Lm~~l~~t 623 (1473)
.|+++||++||+|++++.++.+|..|++++|+.||.+... ..+|++.|.||+..+|.||+.||.+|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987321 12345578899999999999999999999
Q ss_pred CCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCccC-CCCchHHHHHHHH
Q 000468 624 EPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYDDKVACEKIL 702 (1473)
Q Consensus 624 ~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il 702 (1473)
+|||||||.||..|.|+.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.|.... +..|.+.+|..|+
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955555433 3467799999999
Q ss_pred HhcCC--CCcccccceeeeccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchhhHHHH
Q 000468 703 DKMGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQ 780 (1473)
Q Consensus 703 ~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R~~~l~~aa~~IQk~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~~ 780 (1473)
..+.. .-|+||.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+..
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~--------------------- 796 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRL--------------------- 796 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 98755 4699999999999999999999999998887666666666666666554321
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 781 LRREAAALKIQKNFHSYTARTSYLTAR 807 (1473)
Q Consensus 781 ~r~~~AAi~IQ~~~R~~~~Rr~y~~~r 807 (1473)
.+..|+.+||+++|.|+..+.|.+.+
T Consensus 797 -~~~~ai~~iQ~N~r~~~~lr~w~W~~ 822 (1930)
T KOG0161|consen 797 -QQLDAIKVIQRNIRAYLKLRTWPWWR 822 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHhhccCHHHH
Confidence 24457788999999998888877654
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.3e-188 Score=1765.57 Aligned_cols=664 Identities=53% Similarity=0.868 Sum_probs=626.1
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHH
Q 000468 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1473)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1473)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||++
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC--CCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEE
Q 000468 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1473)
Q Consensus 143 m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~--~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~ 220 (1473)
|.++++||||||||||||||||++|+||+|||.++++.. ....+|+++|+++||||||||||||+|||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 234689999999999999999999999999999999999
Q ss_pred EEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000468 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1473)
Q Consensus 221 l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f 299 (1473)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEe
Q 000468 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1473)
Q Consensus 300 ~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1473)
.+|+.||+.|||+++++.+||+|||||||||||+|.+..+ +.+.+.. +...++.||+||||++++|.++|++|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987543 3322221 234799999999999999999999999999
Q ss_pred CCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccC---CCCCeEEEeecccccccCCCCchhhhhhhhchh
Q 000468 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD---PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1473)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 456 (1473)
++|.+++|++++||.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhc--CCCC
Q 000468 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKR 534 (1473)
Q Consensus 457 kLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~ 534 (1473)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.|+ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 799999999999999999999999999998 8999
Q ss_pred CCCCCCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCc-----------------C
Q 000468 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------------S 597 (1473)
Q Consensus 535 f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 597 (1473)
|.+|+.....|+|+||||+|+|+++||++||||.++++++++|++|+++||+.||+.....+ .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532111 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHH
Q 000468 598 KSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1473)
Q Consensus 598 ~~~~~~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1473)
+..+.+||+++||.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 11256799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCccCCCCchHHHHHHHHHhcCC--CCcccccceeeeccchhhHHHHHH
Q 000468 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
.||++|+|.......|++..|+.||+.+.. +.|++|+||||||+|+++.||++|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998764456889999999999874 589999999999999999999876
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.9e-187 Score=1759.05 Aligned_cols=667 Identities=46% Similarity=0.784 Sum_probs=626.5
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHH
Q 000468 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1473)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1473)
+.+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++|+.|+++..+++||||||||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC------CCCccHHHHHHhcchHHhhccCcccccCCCCC
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~------~~~~~ie~~il~snpiLEAFGNAkT~rN~NSS 213 (1473)
|++|.+.++||||||||||||||||++|+||+|||.+++... ....+|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred CcceEEEEEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCC-CCCccccCCCccccC
Q 000468 214 RFGKFVELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDP-KSFHYLNQSNCYALD 291 (1473)
Q Consensus 214 RfGk~~~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~-~~~~yl~~~~~~~~~ 291 (1473)
|||||++|+||.+|+|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78899999999876 99999999886 578
Q ss_pred CCCcHHHHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHh
Q 000468 292 GVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDA 371 (1473)
Q Consensus 292 ~~dD~~~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 371 (1473)
++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+ ..++..||+||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDG---TEEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCC---hHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999998764445555544 357999999999999999999
Q ss_pred hhceEEEeCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhh
Q 000468 372 LINRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1473)
Q Consensus 372 L~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcI 451 (1473)
||+|++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877778999999999999999999999999
Q ss_pred hhchhhhhhhhhhhhhhhhHhhhhhcCCccccccc-cchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhc
Q 000468 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK 530 (1473)
Q Consensus 452 NyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f-~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~ 530 (1473)
|||||||||+||+|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCCC--CCCCCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCc----------CC
Q 000468 531 SNKRF--IKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES----------SK 598 (1473)
Q Consensus 531 ~~~~f--~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------~~ 598 (1473)
+|++| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+ .+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99887 4455567899999999999999999999999999999999999999999999998642211 11
Q ss_pred CCCCcchhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHh
Q 000468 599 SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLH 678 (1473)
Q Consensus 599 ~~~~~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 678 (1473)
.++++||+++||.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 22468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcc-CCCCchHHHHHHHHHhcCCC--CcccccceeeeccchhhHHHHHH
Q 000468 679 RFGVLAPDVL-DGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
||++|+|... ....|+++.|+.||+.++++ .|++|+||||||++++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998864 33458899999999988764 89999999999999999999876
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.3e-187 Score=1752.36 Aligned_cols=661 Identities=46% Similarity=0.773 Sum_probs=625.2
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHH
Q 000468 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1473)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1473)
|||||+.|++||||+|||+|+.||.++.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEE
Q 000468 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1473)
Q Consensus 143 m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~ 222 (1473)
|.++++||||||||||||||||++|++|+|||.+++.. .+|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000468 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1473)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~~ 301 (1473)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCC--CCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEe
Q 000468 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1473)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1473)
|+.||++|||+++++.+||+|||||||||||+|.+... .+.+.+.+ ...++.||+||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 23455544 35799999999999999999999999999
Q ss_pred CCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccC-CCCCeEEEeecccccccCCCCchhhhhhhhchhhh
Q 000468 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1473)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1473)
+++.+++|++++||.++||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754 45678999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000468 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1473)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1473)
||+||+|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.|++|++|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCc-CCCCCCcchhHHHHHHHHHH
Q 000468 539 KL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1473)
Q Consensus 539 ~~-~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~fk~~L~~L 616 (1473)
+. ....|+|+||||+|+|+++||++||||.++++++++|+.|+|++|+.||+.....+ ..+.+.+||+++||.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 45799999999999999999999999999999999999999999999998754221 12235689999999999999
Q ss_pred HHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCccCC--CCch
Q 000468 617 METLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG--NYDD 694 (1473)
Q Consensus 617 m~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1473)
|++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3477
Q ss_pred HHHHHHHHHhcCC--CCcccccceeeeccchhhHHHHHH
Q 000468 695 KVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 695 ~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
+..|+.|++.+.+ ++|++|+||||||++++..||+.|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998765 589999999999999999999875
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=7.9e-186 Score=1739.75 Aligned_cols=662 Identities=45% Similarity=0.776 Sum_probs=626.6
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHH
Q 000468 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1473)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1473)
|||||+.|++|||++|||+|+.||.++.||||+|+||||||||+++| +|++++|+.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEE
Q 000468 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1473)
Q Consensus 143 m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~ 222 (1473)
|.++++||||||||||||||||++|++|+|||.++++.. ....|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986532 2356999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000468 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1473)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~~ 301 (1473)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEeCC
Q 000468 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1473)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1473)
|+.||++|||+++++.+||+|||||||||||+|....+ +.+.+.+ ...++.||+||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2234433 3579999999999999999999999999998
Q ss_pred ----ceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccC-CCCCeEEEeecccccccCCCCchhhhhhhhchh
Q 000468 382 ----EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1473)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 456 (1473)
|.+++|+++++|.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhc-CCCccccchhhhccCC-CCchHHHHHHHHHHhcCCCC
Q 000468 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFAQKLYQTFKSNKR 534 (1473)
Q Consensus 457 kLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~-k~~Gil~lLdee~~~p-~~td~~f~~kl~~~~~~~~~ 534 (1473)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHHHHHHHH
Q 000468 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1473)
Q Consensus 535 f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~fk~~L~ 614 (1473)
|.+|+..+..|+|+||||+|+|+++||++||||.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999999999999986433222 2255799999999999
Q ss_pred HHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCcc-CCCCc
Q 000468 615 SLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL-DGNYD 693 (1473)
Q Consensus 615 ~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 693 (1473)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|+|... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998753 23468
Q ss_pred hHHHHHHHHHhcCC--CCcccccceeeeccc-hhhHHHHHH
Q 000468 694 DKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1473)
Q Consensus 694 ~~~~~~~il~~~~~--~~~~iG~TkVFlr~~-~~~~LE~~R 731 (1473)
+++.|+.||..+++ +.|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 89999999999876 489999999999998 689999875
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=7.3e-186 Score=1735.06 Aligned_cols=657 Identities=48% Similarity=0.828 Sum_probs=615.3
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHH
Q 000468 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1473)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1473)
...++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|++.. .+||||||||+.|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999998 99999999999764 4699999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEE
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~ 219 (1473)
|+.|..+++||||||||||||||||++|+||+|||.++++ ..|+++|+++||||||||||||+|||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 36999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000468 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1473)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~ 298 (1473)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999 688999999999999999999999999999999999
Q ss_pred HHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEE
Q 000468 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1473)
Q Consensus 299 f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 378 (1473)
|.+|+.||+.|||+++++..||+|||||||||||+|...++.+.+.+. +.+.+..||+||||+.++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPV---ADEALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccC---ChHHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 999999999999999999999999999999999999875433333333 23479999999999999999999999999
Q ss_pred eCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCC-CCeEEEeecccccccCCCCchhhhhhhhchhh
Q 000468 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINFTNEK 457 (1473)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEk 457 (1473)
++++.+.+|++++||.++||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987543 46799999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCC
Q 000468 458 LQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK 537 (1473)
Q Consensus 458 Lqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~ 537 (1473)
|||+||++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~ 474 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRG 474 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCC-----CC-C-----cCCCCCCcchh
Q 000468 538 PKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPL-----PE-E-----SSKSSKFSSIG 606 (1473)
Q Consensus 538 p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~-----~~-~-----~~~~~~~~tv~ 606 (1473)
|+ ...|+|+||||+|+|+++||++||||.++++++++|++|+++++. +|... +. + +.+.++..||+
T Consensus 475 ~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~ 551 (677)
T cd01383 475 ER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVG 551 (677)
T ss_pred CC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchH
Confidence 75 468999999999999999999999999999999999999999876 55421 10 0 11123568999
Q ss_pred HHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccC
Q 000468 607 SRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPD 686 (1473)
Q Consensus 607 ~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~ 686 (1473)
++||.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|+|.
T Consensus 552 ~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 631 (677)
T cd01383 552 TKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631 (677)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCchHHHHHHHHHhcCC--CCcccccceeeeccchhhHHHHHH
Q 000468 687 VLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 687 ~~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
... ..|++..|+.||+.+++ ++|++|+||||||+|+++.||+.|
T Consensus 632 ~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 632 NIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 654 35788999999998876 489999999999999999999875
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=4.7e-185 Score=1730.63 Aligned_cols=661 Identities=41% Similarity=0.728 Sum_probs=617.8
Q ss_pred CCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHH
Q 000468 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1473)
Q Consensus 62 ~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 141 (1473)
+|||||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|++.+.+++||||||||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEE
Q 000468 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1473)
Q Consensus 142 ~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l 221 (1473)
.|..+++||||||||||||||||++|++|+|||.++++. ...|+++|+++||||||||||||+|||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 24699999999999999999999999999999999999
Q ss_pred EEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHH
Q 000468 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYL 300 (1473)
Q Consensus 222 ~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~ 300 (1473)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..+++++|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999999999999999
Q ss_pred HHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCC--CCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEE
Q 000468 301 ATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1473)
Q Consensus 301 ~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 378 (1473)
.|+.||++|||+++++..||+|||||||||||+|..... .+.+.+.+ ...+..||+|||||+++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999987432 22233333 3479999999999999999999999999
Q ss_pred eCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhhhhchhhh
Q 000468 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1473)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1473)
+++|.+.+|+++++|.++||||||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4568999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000468 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1473)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1473)
||+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|+|||++|++|++..|++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCC---------c--CCCCCCcchhH
Q 000468 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE---------S--SKSSKFSSIGS 607 (1473)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~---------~--~~~~~~~tv~~ 607 (1473)
+.+.+.|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... + ++..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999753110 0 01124579999
Q ss_pred HHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCc
Q 000468 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1473)
Q Consensus 608 ~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 687 (1473)
+|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|+|..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cCCCCchHHHHHHHHHhcCC--CCcccccceeeeccchhhHHHHHH
Q 000468 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
.....+.+..+..++..+++ +.|++|+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44332334445788887765 479999999999999999999875
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.8e-184 Score=1729.04 Aligned_cols=664 Identities=41% Similarity=0.682 Sum_probs=622.2
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccC-CCCCCchHHHHHHHH
Q 000468 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQ-FGELSPHVFAIADVA 139 (1473)
Q Consensus 61 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~-~~~~~PHifavA~~A 139 (1473)
..++|||+.|++||||+|||+|+.||.++.||||+|+||||||||+++| +|+++.++.|++.. .+++|||||+||+.|
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~A 84 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVA 84 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHH
Confidence 3679999999999999999999999999999999999999999999998 99999999999887 789999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEE
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~ 219 (1473)
|+.|.++++||||||||||||||||++|+||+|||.+++.. ....+|+++|+++||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i 163 (692)
T cd01385 85 YYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 163 (692)
T ss_pred HHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence 99999999999999999999999999999999999997532 23367999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000468 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1473)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~ 298 (1473)
+|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+
T Consensus 164 ~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~ 243 (692)
T cd01385 164 QVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHE 243 (692)
T ss_pred EEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999 688999999999888999999999887789999999
Q ss_pred HHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCC---CCccccccccchHHHHHHHHHcCCCHHHHHHhhhce
Q 000468 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR 375 (1473)
Q Consensus 299 f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r 375 (1473)
|.+|+.||+.|||++++++.||+|||||||||||+|.+..+ .+++.+.+ .+.+..||.||||++++|.++||++
T Consensus 244 f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~ 320 (692)
T cd01385 244 FERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKK 320 (692)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999987432 23444443 4579999999999999999999999
Q ss_pred EEEeCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCC---CCCeEEEeecccccccCCC-Cchhhhhh
Q 000468 376 VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP---NSRTIIGVLDIYGFESFKL-NSFEQFCI 451 (1473)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfEQlcI 451 (1473)
++.+++|.+++|++++||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. ||||||||
T Consensus 321 ~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcI 400 (692)
T cd01385 321 RTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCI 400 (692)
T ss_pred eEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhh
Confidence 9999999999999999999999999999999999999999999998643 2468999999999999999 99999999
Q ss_pred hhchhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcC
Q 000468 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1473)
Q Consensus 452 NyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 531 (1473)
||||||||++||+|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++|+++.|++
T Consensus 401 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~ 480 (692)
T cd01385 401 NYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKD 480 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcC---------CCCCC
Q 000468 532 NKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS---------KSSKF 602 (1473)
Q Consensus 532 ~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~ 602 (1473)
|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+..+.... ++.+.
T Consensus 481 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~ 560 (692)
T cd01385 481 NKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAA 560 (692)
T ss_pred CCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccC
Confidence 999999988888999999999999999999999999999999999999999999999976432211 11234
Q ss_pred cchhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcc
Q 000468 603 SSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGV 682 (1473)
Q Consensus 603 ~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 682 (1473)
+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++
T Consensus 561 ~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~ 640 (692)
T cd01385 561 PSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRI 640 (692)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccCCCCchHHHHHHHHHhcCCC--CcccccceeeeccchhhHHHHHHH
Q 000468 683 LAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRA 732 (1473)
Q Consensus 683 l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~LE~~R~ 732 (1473)
|+|.... +.++.|+.||+.++++ .|+||+||||||+++++.||....
T Consensus 641 L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 641 LLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred hCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 9987432 4467799999998774 899999999999999999998643
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.9e-184 Score=1734.53 Aligned_cols=665 Identities=43% Similarity=0.729 Sum_probs=620.1
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHH
Q 000468 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1473)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1473)
.|.++|||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+|++|++++++.|+++..+++||||||||+.|
T Consensus 2 ~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 81 (717)
T cd01382 2 SKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKA 81 (717)
T ss_pred CCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEE
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~ 219 (1473)
|++|.+.++||||||||||||||||++|+||+|||.+++++ .+|+++|+++||||||||||||+|||||||||||+
T Consensus 82 y~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~ 157 (717)
T cd01382 82 YRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV 157 (717)
T ss_pred HHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEE
Confidence 99999999999999999999999999999999999986542 57999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCC------------
Q 000468 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN------------ 286 (1473)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~------------ 286 (1473)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 158 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~ 237 (717)
T cd01382 158 EIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQ 237 (717)
T ss_pred EEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred --------------ccccCCCCcHHHHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCC-CCccccccccch
Q 000468 287 --------------CYALDGVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE-ADSSVIKDEKSR 351 (1473)
Q Consensus 287 --------------~~~~~~~dD~~~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~~~ 351 (1473)
|..++++||+++|.+|+.||++|||+++++..||+|||||||||||+|.+... .+.+.+.+ .+.
T Consensus 238 ~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~ 316 (717)
T cd01382 238 ILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSE 316 (717)
T ss_pred ccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCH
Confidence 33467899999999999999999999999999999999999999999987432 23343332 245
Q ss_pred HHHHHHHHHcCCCHHHHHHhhhceEEE-----eCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCC
Q 000468 352 FHLNTTAELLKCDAKSLEDALINRVMV-----TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNS 426 (1473)
Q Consensus 352 ~~l~~~a~LLgv~~~~L~~~L~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~ 426 (1473)
..+..||+||||++++|.++|++|++. ++++.+.+|++++||..+||+|||+||++||+|||.+||.++..+. .
T Consensus 317 ~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~ 395 (717)
T cd01382 317 QSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-S 395 (717)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Confidence 689999999999999999999999998 6789999999999999999999999999999999999999997653 5
Q ss_pred CeEEEeecccccccCCCCchhhhhhhhchhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccc
Q 000468 427 RTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIAL 506 (1473)
Q Consensus 427 ~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~l 506 (1473)
..+||||||||||+|+.|||||||||||||||||+||++||+.||++|.+|||+|++|+|.||++|||||++||.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCchHHHHHHHHHHhcCCCCCCCCCCC----------CCceEEEecccceeeehhhHhhhccccchHHHHHH
Q 000468 507 LDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVL 576 (1473)
Q Consensus 507 Ldee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~l 576 (1473)
|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999988877532 25799999999999999999999999999999999
Q ss_pred HhhCCchhHhhcCCCCCCC---cCC--CCCCcchhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhh
Q 000468 577 LTASKCPFVSGLFPPLPEE---SSK--SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQL 651 (1473)
Q Consensus 577 l~~S~~~~v~~lf~~~~~~---~~~--~~~~~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QL 651 (1473)
|++|+++||+.||+..... ..+ ..++.||+++||.||+.||++|++|+||||||||||+.++|+.||..+|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 9999999999999864321 111 12567999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHhhcCCcccchHHHHhhhcccccCccCCCCchHHHHHHHHHhcCCC--CcccccceeeeccchhhHHHH
Q 000468 652 RCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDA 729 (1473)
Q Consensus 652 r~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~LE~ 729 (1473)
||+||||+|||+|+|||+|++|.+|++||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999987553 358899999999998764 899999999999999999998
Q ss_pred HH
Q 000468 730 RR 731 (1473)
Q Consensus 730 ~R 731 (1473)
+.
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 53
No 14
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.2e-184 Score=1593.40 Aligned_cols=728 Identities=40% Similarity=0.698 Sum_probs=674.4
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHH
Q 000468 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1473)
Q Consensus 61 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay 140 (1473)
..|++|++-|+.+.|++++.||+.||..+.||||+|+|||+||||+.++ ||+++.|++|+|....+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 4689999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCC-CCccHHHHHHhcchHHhhccCcccccCCCCCCcceEE
Q 000468 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1473)
Q Consensus 141 ~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~-~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~ 219 (1473)
++|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|+|||||||||||||.||||||||||||
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999865432 1246778999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCC-CCCCCccccCCCccccCCCCcHH
Q 000468 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLG-DPKSFHYLNQSNCYALDGVDDTE 297 (1473)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~dD~~ 297 (1473)
.|.||-+|..+|++|.+|||||||||.|.+|||||||||||+. +++.+...|+|. ++..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 788889999996 79999999998 88899999999
Q ss_pred HHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEE
Q 000468 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVM 377 (1473)
Q Consensus 298 ~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 377 (1473)
+|..++.||.++||+++|+.++|+|+|||||||||+|.++. |++.+... ..+..+|+||++..++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 44444432 47999999999999999999999999
Q ss_pred EeCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCC-----CCCeEEEeecccccccCCCCchhhhhhh
Q 000468 378 VTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-----NSRTIIGVLDIYGFESFKLNSFEQFCIN 452 (1473)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-----~~~~~IgiLDi~GFE~f~~NsfEQlcIN 452 (1473)
.+++|.+.+++++.||..+||||||++|+|||+|||.+||++|.... .....||||||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999996431 2358999999999999999999999999
Q ss_pred hchhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCC-CchHHHHHHHHHHhcC
Q 000468 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFAQKLYQTFKS 531 (1473)
Q Consensus 453 yaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~-~td~~f~~kl~~~~~~ 531 (1473)
|+||||||.|++-++|.|||||.+|||+|+.|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred CCCCCCCC-------CCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcC-CCCCCc
Q 000468 532 NKRFIKPK-------LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS-KSSKFS 603 (1473)
Q Consensus 532 ~~~f~~p~-------~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-~~~~~~ 603 (1473)
|++|..-+ +.-.+|.|.||||+|+|+|.||++||+|.+..|+-.+|..|+++++++||+.....-. ...+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 2346899999999999999999999999999999999999999999999996432211 123668
Q ss_pred chhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhccc
Q 000468 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1473)
Q Consensus 604 tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 683 (1473)
|.|++||.|+..||+.|.+-+|+||||||||+.|.|+.||...|.+|.+|.|+||.+|++|+||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccC--CCCchHHHHHHHHHhcCC-CCcccccceeeeccch-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000468 684 APDVLD--GNYDDKVACEKILDKMGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALR 759 (1473)
Q Consensus 684 ~~~~~~--~~~~~~~~~~~il~~~~~-~~~~iG~TkVFlr~~~-~~~LE~~R~~~l~~aa~~IQk~~R~~~~Rk~y~~~r 759 (1473)
++..+. ...++++.|..|++..+. +++.+|+||||+|.+. +-.||..|.+.+...++.||+.||||++|.+|++++
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988653 234578999999999987 4799999999999875 679999999999999999999999999999999999
Q ss_pred HHHHhHhhhhcccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000468 760 KAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLT 805 (1473)
Q Consensus 760 ~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~ 805 (1473)
++++.|+ +||.+. ...++..||+.+|++..++.|.+
T Consensus 720 a~~~ii~-wyR~~K---------~ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYK---------LKSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHH-HHHHHH---------HHHHHHHHHHHHHhhhhccccCC
Confidence 9999999 788432 22456689999999999998864
No 15
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.6e-181 Score=1563.04 Aligned_cols=788 Identities=40% Similarity=0.675 Sum_probs=710.8
Q ss_pred ccCcEEEEeCCCCCeEEEEEEEEcCCeEEEEe--CCCcEEEEeCCCccCCCCCCCCCCcCccccCCCCChHHHHHHHHHh
Q 000468 8 IVGSHVWVEHPELAWVDGEVFKISAEEVHVHT--TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAAR 85 (1473)
Q Consensus 8 ~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~E~~vL~~L~~R 85 (1473)
.-|..||++|+.++|+.|.|++++.+.+++.. ..|.+++.-.+++++...+ ++..+||-|.|-||||+.+|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhh
Confidence 45889999999999999999999988888865 3577888888888887543 56889999999999999999999999
Q ss_pred hccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhh
Q 000468 86 YELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTET 165 (1473)
Q Consensus 86 y~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes 165 (1473)
|.+|.||||+.+||||||||..++.+|+++.|..|+|+..|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEEEcCCCcccceeeeeeeccCcccc
Q 000468 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLERSRVC 245 (1473)
Q Consensus 166 ~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~Ga~i~tyLLEksRvv 245 (1473)
+|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-|+.|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986554 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCc--------------------------cccCCCCcHHH
Q 000468 246 QISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNC--------------------------YALDGVDDTEE 298 (1473)
Q Consensus 246 ~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~--------------------------~~~~~~dD~~~ 298 (1473)
.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|-. ..-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8899999999999999999985411 11233789999
Q ss_pred HHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCC--CCccccccccchHHHHHHHHHcCCCHHHHHHhhhceE
Q 000468 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRV 376 (1473)
Q Consensus 299 f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~ 376 (1473)
|..+..||..+|++++|...||+++|||||||||+|++..+ ..+|.+.+ .+...|..+|+|||+|.++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 34666665 4567899999999999999999999998
Q ss_pred EEeC-----CceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhh
Q 000468 377 MVTP-----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1473)
Q Consensus 377 ~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcI 451 (1473)
+.+. |..|.+||.+.+|..+||||||++|++||||||.+||.++... .+..|||||||.|||.|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 8653 4588999999999999999999999999999999999999653 578999999999999999999999999
Q ss_pred hhchhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcC
Q 000468 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1473)
Q Consensus 452 NyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 531 (1473)
||+|||||++||+.+++.|||.|++||++...|+|.|||+||+|||.|..|||+|||||.++|+++++.|....++.+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC----------CCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCC--C
Q 000468 532 NKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK--S 599 (1473)
Q Consensus 532 ~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~--~ 599 (1473)
|-+..-||.+ ...|.|+||||.|+|++..|+|||.|.+...+..|+..|+++||.+||++....+.+ .
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888777643 347999999999999999999999999999999999999999999999985433322 1
Q ss_pred C--CCcchhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHH
Q 000468 600 S--KFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1473)
Q Consensus 600 ~--~~~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1473)
+ ++-|||++||.||..||+.|++|..|||||||||..+.|+.||...++.||.|+|+...++++..|||+|..|.|.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 67799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCccCCCCchHHHHHHHHHhcCCC--CcccccceeeeccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000468 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEF 755 (1473)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~LE~~R~~~l~~aa~~IQk~~R~~~~Rk~y 755 (1473)
.-|.-.+|+.+. ..|++..|+.+...+|++ +|++|.||||||+|.++..++.....-...+..|++ +..|+.|.++
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~k-Vn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAK-VNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHH-HHHHHHHhHH
Confidence 999988888665 468999999999999986 799999999999999999999876666666666654 6789999998
Q ss_pred HHHHHHHHhHhhhhcccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 756 IALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQ 812 (1473)
Q Consensus 756 ~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~ 812 (1473)
.+...++..+-.. ..+. .-+..+.+++|+..|||++|+++.........
T Consensus 793 kk~q~~a~sVIKL----kNkI----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K 841 (1259)
T KOG0163|consen 793 KKSQYGALSVIKL----KNKI----IYRAECVLKAQRIARGYLARKRHRPRIAGIRK 841 (1259)
T ss_pred HHhhhhhhheeeh----hhHH----HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Confidence 8776654432211 1111 22445778899999999999998765543333
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=6.4e-182 Score=1693.49 Aligned_cols=639 Identities=39% Similarity=0.709 Sum_probs=602.0
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHH
Q 000468 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1473)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1473)
++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|++...+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEE
Q 000468 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1473)
Q Consensus 143 m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~ 222 (1473)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHH-hhcCCCCCCCCccccCCCccccCCCC----cH
Q 000468 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVR-EKFKLGDPKSFHYLNQSNCYALDGVD----DT 296 (1473)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~-~~l~L~~~~~~~yl~~~~~~~~~~~d----D~ 296 (1473)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++.+|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 454544 78999999999999999887777775 46
Q ss_pred HHHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCC---CCccccccccchHHHHHHHHHcCCCHHHHHHhhh
Q 000468 297 EEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALI 373 (1473)
Q Consensus 297 ~~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~ 373 (1473)
++|.+|+.||.+|||+++++..||+|||||||||||+|.+... .+.+.+. +..++..||+|||||.++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~---~~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVS---NVAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 2233333 345799999999999999999999
Q ss_pred ceEEEeCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCC-----CCeEEEeecccccccCCCCchhh
Q 000468 374 NRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-----SRTIIGVLDIYGFESFKLNSFEQ 448 (1473)
Q Consensus 374 ~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfEQ 448 (1473)
++++.++++.+++|++++||.++||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986543 35799999999999999999999
Q ss_pred hhhhhchhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHH
Q 000468 449 FCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQT 528 (1473)
Q Consensus 449 lcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~ 528 (1473)
||||||||||||+||++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++..
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCCCCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHH
Q 000468 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1473)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1473)
++ ++.|.+|+.....|+|+||||+|+|+++||++||||.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 4678899888889999999999999999999999999999999999988 489999
Q ss_pred HHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCcc
Q 000468 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1473)
Q Consensus 609 fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 688 (1473)
||.||.+||++|++|+||||||||||+.|+|+.||+..|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCchHHHHHHHHHhcCCCCcccccceeeeccchhhHHHHHH
Q 000468 689 DGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 689 ~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999865
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.7e-180 Score=1699.99 Aligned_cols=667 Identities=54% Similarity=0.913 Sum_probs=630.7
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHH
Q 000468 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1473)
Q Consensus 61 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay 140 (1473)
..+++||+.|++|||++||++|+.||..+.||||+|++|||||||+++| +|+++.+..|+++..+++|||||+||+.||
T Consensus 5 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 83 (677)
T smart00242 5 FEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAY 83 (677)
T ss_pred cCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEE
Q 000468 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1473)
Q Consensus 141 ~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~ 220 (1473)
+.|..+++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~ 162 (677)
T smart00242 84 RNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIE 162 (677)
T ss_pred HHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEE
Confidence 99999999999999999999999999999999999986532 34679999999999999999999999999999999999
Q ss_pred EEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000468 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1473)
Q Consensus 221 l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f 299 (1473)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 163 l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f 242 (677)
T smart00242 163 IHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEF 242 (677)
T ss_pred EEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCcc-ccccccchHHHHHHHHHcCCCHHHHHHhhhceEEE
Q 000468 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSS-VIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1473)
Q Consensus 300 ~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 378 (1473)
.+|+.||+.|||+++++.+||+|||||||||||+|....+.+.. .+. +...++.||+||||+.++|.++|+++++.
T Consensus 243 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 319 (677)
T smart00242 243 KETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIK 319 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEE
Confidence 99999999999999999999999999999999999875432221 222 34579999999999999999999999999
Q ss_pred eCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhhhhchhhh
Q 000468 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1473)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1473)
+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||
T Consensus 320 ~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 320 TGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 99999999999999999999999999999999999999999998767789999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000468 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1473)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1473)
|++||+++|+.||++|++|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+|
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHH
Q 000468 539 K-LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLM 617 (1473)
Q Consensus 539 ~-~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~Lm 617 (1473)
+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+.+||+++||.||+.||
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~ 559 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLM 559 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHH
Confidence 4 456799999999999999999999999999999999999999999999998754433333467899999999999999
Q ss_pred HHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCccCC-CCchHH
Q 000468 618 ETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKV 696 (1473)
Q Consensus 618 ~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~ 696 (1473)
++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..|+++
T Consensus 560 ~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~ 639 (677)
T smart00242 560 DTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKE 639 (677)
T ss_pred HHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875432 346899
Q ss_pred HHHHHHHhcCC--CCcccccceeeeccchhhHHHHHHH
Q 000468 697 ACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRA 732 (1473)
Q Consensus 697 ~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R~ 732 (1473)
.|+.||+.+++ +.|++|+||||||++++..||++|.
T Consensus 640 ~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 640 ACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999864 5899999999999999999999873
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.6e-178 Score=1687.18 Aligned_cols=662 Identities=53% Similarity=0.871 Sum_probs=621.3
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHH
Q 000468 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1473)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1473)
|++||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEE
Q 000468 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1473)
Q Consensus 143 m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~ 222 (1473)
|.++++||||||||||||||||++|+||+||+.++++. ...|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 356999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000468 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1473)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~~ 301 (1473)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 688999999999999999999999998899999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCc--cccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEe
Q 000468 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADS--SVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1473)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1473)
++.||++|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.+|+||||+.++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543322 3333 345799999999999999999999999999
Q ss_pred CCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCCCchhhhhhhhchhhhh
Q 000468 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQ 459 (1473)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq 459 (1473)
+++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887667899999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCCCCCC-C
Q 000468 460 QHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK-P 538 (1473)
Q Consensus 460 q~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~-p 538 (1473)
|+|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++.|++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998644 4
Q ss_pred CCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCc-----------CCCCCCcchhH
Q 000468 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------SKSSKFSSIGS 607 (1473)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------~~~~~~~tv~~ 607 (1473)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+ .+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 4566799999999999999999999999999999999999999999999998632111 11225689999
Q ss_pred HHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCc
Q 000468 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1473)
Q Consensus 608 ~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 687 (1473)
+|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCCCchHHHHHHHHHhcCC--CCcccccceeeeccchhhHHHHHH
Q 000468 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
..........|+.++..+++ +.|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333344459999998876 489999999999999999999864
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.4e-178 Score=1682.51 Aligned_cols=660 Identities=32% Similarity=0.502 Sum_probs=591.9
Q ss_pred cCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHHH
Q 000468 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1473)
Q Consensus 64 ~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 143 (1473)
||||+.|++||||+|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEEE
Q 000468 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQF 223 (1473)
Q Consensus 144 ~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~f 223 (1473)
..+++||||||||||||||||++|+||+|||.+++..+. ..++ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999864321 1234 57999999999999999999999999999999999
Q ss_pred cCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCC-CccccCCCCcHHHHHH
Q 000468 224 DKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQS-NCYALDGVDDTEEYLA 301 (1473)
Q Consensus 224 ~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~-~~~~~~~~dD~~~f~~ 301 (1473)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.+ .+...+++||+++|.+
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 68899999999876554333332 2334678999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEeCC
Q 000468 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1473)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1473)
|+.||++|||+++++..||+|||||||||||+|.+.. +.+.+.+ .+.++.||+||||+.++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 2233333 3479999999999999999999998876553
Q ss_pred c-------------eEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEEEeecccccccCCC-----
Q 000468 382 E-------------VITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKL----- 443 (1473)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1473)
+ .+..++++.+|.++||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3445678999999999999999999999999999999998766678999999999999984
Q ss_pred -CchhhhhhhhchhhhhhhhhhhhhhhhHhhhhhcCCccccccc-cchHHHHHHhhcCC--------------Cccccch
Q 000468 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKP--------------GGIIALL 507 (1473)
Q Consensus 444 -NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f-~dN~~~idlie~k~--------------~Gil~lL 507 (1473)
|||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++||||||++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 9999999999999999999999999999999999999987655 79999999999865 5999999
Q ss_pred hhhccCCCCchHHHHHHHHHHhcCCCCCCCCC--C----CCCceEEEecccc--eeeehhhHhhhccccc-hHHHHHHHh
Q 000468 508 DEACMFPKSTHETFAQKLYQTFKSNKRFIKPK--L----SRTSFTISHYAGE--VTYLADLFLDKNKDYV-VAEHQVLLT 578 (1473)
Q Consensus 508 dee~~~p~~td~~f~~kl~~~~~~~~~f~~p~--~----~~~~F~I~Hyag~--V~Y~~~gfleKN~D~~-~~~~~~ll~ 578 (1473)
||||++|+|||++|++||++.|++|++|.+++ . ....|+|+||||. |+|+++||+|||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999988887622 1 2468999999995 9999999999999975 689999999
Q ss_pred hCCchhHhhcCCCCCC-------------CcC----------C--------CCCCcchhHHHHHHHHHHHHHHccCCCee
Q 000468 579 ASKCPFVSGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNSTEPHY 627 (1473)
Q Consensus 579 ~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~fk~~L~~Lm~~l~~t~~hf 627 (1473)
+|++++|+.||+.... +.+ + ..+.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999964210 000 0 01345899999999999999999999999
Q ss_pred EEecCCCCCCC----------------------CCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhccccc
Q 000468 628 IRCVKPNNALR----------------------PAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAP 685 (1473)
Q Consensus 628 IrCIkPN~~~~----------------------p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~ 685 (1473)
|||||||+.|. |+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999988
Q ss_pred CccC------CCCchHHHHHHHHHhcCC--CCcccccceeeeccchhhHHHHHH
Q 000468 686 DVLD------GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1473)
Q Consensus 686 ~~~~------~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~LE~~R 731 (1473)
.... ...|++++|+.||+.+++ +.|+||+||||||+|+++.||+.|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6431 235889999999999876 489999999999999999999875
No 20
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.6e-179 Score=1547.99 Aligned_cols=694 Identities=41% Similarity=0.717 Sum_probs=648.7
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHH
Q 000468 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1473)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1473)
...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|.|+..-+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEE
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~ 219 (1473)
|++|....+|||||||||||||||++||+||+|++.++|. +.+...|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~-g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGG-GEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccC-CcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 9999999999999999999999999999999999999853 455567889999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000468 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1473)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~ 298 (1473)
||+|+..|..+|++|.+|||||||||.|.++||||||||||++ |+.+.|..||+..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEE
Q 000468 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1473)
Q Consensus 299 f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 378 (1473)
|++|+.||.++|+.++||+.||++||+|||||||.|.+.. ..+.+.+. ..++-.|.|||||...|++.||.|.|.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999832 23344432 368899999999999999999999886
Q ss_pred e----CCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCC-CCeEEEeecccccccCCCCchhhhhhhh
Q 000468 379 T----PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1473)
Q Consensus 379 ~----~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfEQlcINy 453 (1473)
+ +.+++.+||+++||...||||||+||.+||||||++||.++...+. ...+||||||||||+|++||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 5 3589999999999999999999999999999999999999985433 5689999999999999999999999999
Q ss_pred chhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhc-CCCccccchhhhccCC----CCchHHHHHHHHHH
Q 000468 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFAQKLYQT 528 (1473)
Q Consensus 454 aNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~-k~~Gil~lLdee~~~p----~~td~~f~~kl~~~ 528 (1473)
.||||||.|++-++|.|||||.+|||.|++|+|.||.-|+||||. .|.||+++|||.|.-. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4779999999999754 46799999999999
Q ss_pred hcCCCCCCCCCCCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCcCCCCCCcchhHH
Q 000468 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1473)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1473)
+++||+|..- ...|+|+||||+|+||++||.+||||.|..|+++|++.|+++|++.||+...+..+ ..+.+|.|++
T Consensus 489 ~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds-krRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADS-KRRPPTAGDK 564 (1106)
T ss_pred hcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccc-cCCCCCchhh
Confidence 9999999743 46899999999999999999999999999999999999999999999998655443 3366899999
Q ss_pred HHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcccccCcc
Q 000468 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1473)
Q Consensus 609 fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 688 (1473)
.++|.++|++||..|.||||||||||+.|.|+.||..+|++|+.|.|+=|.|||+|+||.+|..|+.|+.||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C-CCCchHHHHHHHHHhcCC--CCcccccceeeeccc-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000468 689 D-GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIV 764 (1473)
Q Consensus 689 ~-~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~-~~~~LE~~R~~~l~~aa~~IQk~~R~~~~Rk~y~~~r~aai~ 764 (1473)
. +..|++.+|+.||+...+ ++||+|.||||++.. .+-.||.+|.......|..||+.||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 356899999999998654 589999999999985 567899999999999999999999999999999888875543
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=4e-170 Score=1629.40 Aligned_cols=653 Identities=50% Similarity=0.878 Sum_probs=578.5
Q ss_pred cCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHHH
Q 000468 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1473)
Q Consensus 64 ~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 143 (1473)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| +|+++++..|+++..+++||||||||++||+.|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC-CCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEEEEE
Q 000468 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1473)
Q Consensus 144 ~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~-~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~~l~ 222 (1473)
.++++||||||||||||||||++|+||+||+.+++... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000468 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1473)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dD~~~f~~ 301 (1473)
||.+|.++||+|.+||||||||+.|++||||||||||||+ ++++++++|+|.++++|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHhhhceEEEeCC
Q 000468 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1473)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1473)
++.||++|||+++++.+||+|||||||||||+|....+.+.+.+.+. ..++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998764445555443 359999999999999999999999999999
Q ss_pred ceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCC-CCCeEEEeecccccccCCCCchhhhhhhhchhhhhh
Q 000468 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 460 (1473)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq 460 (1473)
|.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999866 578999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHhhhhhcCCccccccc-cchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHh-cCCCCCCCC
Q 000468 461 HFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKP 538 (1473)
Q Consensus 461 ~f~~~vf~~eq~eY~~EgI~w~~i~f-~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~p 538 (1473)
+|++++|+.||++|.+|||+|..|+| .||++|||||+++|.|||++|||||++|+++|++|+++|...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 888999888
Q ss_pred C----CCCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCC----------C---------
Q 000468 539 K----LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE----------E--------- 595 (1473)
Q Consensus 539 ~----~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~----------~--------- 595 (1473)
+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||..... .
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976421 0
Q ss_pred --cCCCCCCcchhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhcCCcccch
Q 000468 596 --SSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1473)
Q Consensus 596 --~~~~~~~~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~ 673 (1473)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|++||++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccCccCC----CCchHHHHHHHHHhcCC--CCcccccceeeec
Q 000468 674 YEFLHRFGVLAPDVLDG----NYDDKVACEKILDKMGL--KGYQIGKTKVFLR 720 (1473)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr 720 (1473)
.+|++||++|+|..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999986532 46889999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=7.8e-117 Score=1118.79 Aligned_cols=754 Identities=36% Similarity=0.570 Sum_probs=663.5
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHH
Q 000468 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1473)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1473)
...+++||+.|.+++|+.+++||..||..+.||||+|++|++||||+.+|.+|.+..+..|.+.+.+++||||||+|+.|
T Consensus 59 ~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~ 138 (1062)
T KOG4229|consen 59 QVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLA 138 (1062)
T ss_pred ccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCcccccCCCCCCcceEE
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRfGk~~ 219 (1473)
|++|.+...||||+||||||||||++|+++++||+.++. +....++++|+.+||+|||||||+|.+|||||||||||
T Consensus 139 y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 139 YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 999999999999999999999999999999999999983 11256899999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeeeccCccccccCCCCccceeeccccc-CChhHHhhcCCCCCCCCccccCCCcccc-CCCCcHH
Q 000468 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYAL-DGVDDTE 297 (1473)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERNfHIFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~-~~~dD~~ 297 (1473)
++.|...|.|.||.+..||||||||+.|+.+||||||||++++ .+.++++.+.|+.+++|.||+++.+..+ ++.++..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999 6778899999999999999999999999 9999999
Q ss_pred HHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCceEEecC--CCCccccccccchHHHHHHHHHcCCCHHHHHHhhhce
Q 000468 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGE--EADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR 375 (1473)
Q Consensus 298 ~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r 375 (1473)
+|..+..||.++||+.+++..||+++|||||+|||.|..-. ..|...+.+ ..++..+|.||.++.+.|.++++.+
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~ 372 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTAR 372 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhccc
Confidence 99999999999999999999999999999999999997632 234444443 3579999999999999999999999
Q ss_pred EEEeCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCC--CCeEEEeecccccccCCCCchhhhhhhh
Q 000468 376 VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN--SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1473)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfEQlcINy 453 (1473)
+..++++.+..+++.++|.++|||+||.||++||+|||.+||..+.++.. ....||||||||||+|+.||||||||||
T Consensus 373 ~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~ 452 (1062)
T KOG4229|consen 373 VNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINL 452 (1062)
T ss_pred ceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654 3689999999999999999999999999
Q ss_pred chhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhhccCCCCchHHHHHHHHHHhcCCC
Q 000468 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNK 533 (1473)
Q Consensus 454 aNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~ 533 (1473)
|||+||++||+|||..||+||..|+|+|..|+|.||++|+|+|..||.||+.+||||+.+|+++|.+++.|+..+|+.+.
T Consensus 453 Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~ 532 (1062)
T KOG4229|consen 453 ANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNN 532 (1062)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCC-CCCceEEEecccceeeehhhHhhhccccchHHHHHHHhhCCchhHhhcCCCCCCCc----------------
Q 000468 534 RFIKPKL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES---------------- 596 (1473)
Q Consensus 534 ~f~~p~~-~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~---------------- 596 (1473)
.+..|+. ..+.|+|.||||.|.|++.||+|||+|.++.++..++++|.+.++..++...+...
T Consensus 533 ~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~ 612 (1062)
T KOG4229|consen 533 LYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVP 612 (1062)
T ss_pred ccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhccccccc
Confidence 7777765 45699999999999999999999999999999999999999888877664311000
Q ss_pred -------------------------------------------------C-----------------------C------
Q 000468 597 -------------------------------------------------S-----------------------K------ 598 (1473)
Q Consensus 597 -------------------------------------------------~-----------------------~------ 598 (1473)
. +
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~ 692 (1062)
T KOG4229|consen 613 LEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLS 692 (1062)
T ss_pred chhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhh
Confidence 0 0
Q ss_pred ------------CC--------------C--------------------------------------------------C
Q 000468 599 ------------SS--------------K--------------------------------------------------F 602 (1473)
Q Consensus 599 ------------~~--------------~--------------------------------------------------~ 602 (1473)
.. + .
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 772 (1062)
T KOG4229|consen 693 SRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRR 772 (1062)
T ss_pred hcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCcccc
Confidence 00 0 0
Q ss_pred cchhH----------------HHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhccchhHHHHHHhhc
Q 000468 603 SSIGS----------------RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAG 666 (1473)
Q Consensus 603 ~tv~~----------------~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~G 666 (1473)
..++. ++......++..+....|.|++||+-|..+....|+...|..|+++.|+++..+++..+
T Consensus 773 e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~ 852 (1062)
T KOG4229|consen 773 ERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSL 852 (1062)
T ss_pred chhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheecc
Confidence 00111 22234445677777788889999999977788899999999999999999999999999
Q ss_pred CCcccchHHHHhhhcccccCccCCCCchHHHHHHHHHhc--CCCCcccccceeeeccchhhHHHHHH-HHHhhhHHHHHH
Q 000468 667 YPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKM--GLKGYQIGKTKVFLRAGQMAELDARR-AEVLGNAARIIQ 743 (1473)
Q Consensus 667 yp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~--~~~~~~iG~TkVFlr~~~~~~LE~~R-~~~l~~aa~~IQ 743 (1473)
|+..+++.+|...+++..|.... .........+ ..+.++.|.+++|+...-...++..- .+.....+...|
T Consensus 853 ~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 926 (1062)
T KOG4229|consen 853 YFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQ 926 (1062)
T ss_pred ccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHH
Confidence 99999999999999998873221 1111222211 34689999999999887655444332 222221367789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcccchhhHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000468 744 RQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYE-QLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVA 822 (1473)
Q Consensus 744 k~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~-~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~a 822 (1473)
++++....|+.|.++..+.+.+| |++++.|+... ......+|.-+|..|+.+..+..+...+.+.+.+|+.+++...
T Consensus 927 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1004 (1062)
T KOG4229|consen 927 KWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAY 1004 (1062)
T ss_pred HHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchh
Confidence 99999999999999999999999 88888877544 2335568889999999999999999999999999999998877
Q ss_pred HHHHH
Q 000468 823 RNEFR 827 (1473)
Q Consensus 823 Rr~~~ 827 (1473)
+..+.
T Consensus 1005 ~~~~~ 1009 (1062)
T KOG4229|consen 1005 TMIFA 1009 (1062)
T ss_pred hhhHH
Confidence 76553
No 23
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=1.3e-27 Score=236.02 Aligned_cols=105 Identities=36% Similarity=0.667 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhHHHhhhhhccCCCCCccchhHHhhchHHHHHHHhhhccccccchHhhhHhHHHHHHhHhcccCCcCCHH
Q 000468 1348 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLN 1427 (1473)
Q Consensus 1348 q~f~Qlf~~In~~~fN~LllRr~~Cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~QA~~lL~~~kk~~~~~~ 1427 (1473)
|+|+|||+|||+.+||+||.|+++|+|++|+||||||+.||+||++++.. .+ ++++|.||+||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~-~~-~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLE-EA-AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTST-TH--HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccc-hh-HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 89999999999999999999999999999999999999999999999933 22 78999999999999999877777776
Q ss_pred HHHhccCCCCCHHHHHHHHhcCccCCCC
Q 000468 1428 EITKELCPVLSIQQLYRISTMYWDDKYG 1455 (1473)
Q Consensus 1428 ~i~~~~C~~Ls~~Qi~kil~~Y~~d~y~ 1455 (1473)
.+ .++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 66 7999999999999999999999987
No 24
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.86 E-value=1.7e-21 Score=234.32 Aligned_cols=236 Identities=19% Similarity=0.359 Sum_probs=193.2
Q ss_pred hhhhh----hHHHHHHHHHHHHHHhccCCC-ccceeehHhHHHHHHHHHHHhhhcCCCCCCccccccccchhhhcccccc
Q 000468 1153 FEVER----TTVFDRIIQTIASAIEVQDNN-DVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGL 1227 (1473)
Q Consensus 1153 ~~~e~----~~l~~~vi~~I~~~i~~~~~~-~~layWLSNt~~Ll~llq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1473)
+..|+ ..||.++.+.+..+|..+.+. ..|+|||+|.++++|++++--. ..
T Consensus 586 ~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~-----------------------ls-- 640 (1629)
T KOG1892|consen 586 SPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRD-----------------------LS-- 640 (1629)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccc-----------------------hh--
Confidence 55555 679999999999999875444 4999999999999999998200 00
Q ss_pred CCCCCCCCcccccCCCccccchhhhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCccccccCC
Q 000468 1228 RASPQSAGLSFLNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLCIQAPRTSRASLVKGR 1307 (1473)
Q Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~fkqqL~~~~~~iy~~l~~~~kk~l~p~L~~~I~~~~~~~~~~~~~~ 1307 (1473)
.+. ++ . ...|..+++.+|--|..+++-+|+|-+...+. ...
T Consensus 641 -------~~~---------~~------------a-q~vla~~vq~aFr~LV~clqsel~~~~~afLd-en~--------- 681 (1629)
T KOG1892|consen 641 -------RIT---------LD------------A-QDVLAHLVQMAFRYLVHCLQSELNNYMPAFLD-ENS--------- 681 (1629)
T ss_pred -------hee---------hh------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcc---------
Confidence 000 00 0 13467778889999999999998887543321 100
Q ss_pred CcchhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHhhhhhcc--CCCCCccchhHHhhchH
Q 000468 1308 SQANAVAQQALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEYVKAGLA 1385 (1473)
Q Consensus 1308 ~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~~In~~~fN~LllR--r~~Cs~s~G~qIr~nls 1385 (1473)
.......++|..|+..+..|+.|+|...|.-|+|+|||+|||+++||.|..- -.+|+--+|--|++-|.
T Consensus 682 ---------~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~ 752 (1629)
T KOG1892|consen 682 ---------LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLG 752 (1629)
T ss_pred ---------ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHH
Confidence 1122456899999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHHHHHhhhccccccchHhhhHhHHHHHHhHhcccCCcCCHHHHHhccCCCCCHHHHHHHHhcCccCCCCCcccCccccc
Q 000468 1386 ELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVSY 1465 (1473)
Q Consensus 1386 ~Le~W~~~~~~~~~~~a~~~L~~l~QA~~lL~~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~y~~~~is~~v~~ 1465 (1473)
.||.||...|.+.+.++ +|..|+||++||++.|....|+..| ...|..|+.-|++.||..|.+|+-+. .|+.+++.
T Consensus 753 ~ie~waErqGlElAAdC--HL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd 828 (1629)
T KOG1892|consen 753 HIEAWAERQGLELAADC--HLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVD 828 (1629)
T ss_pred HHHHHHHHhcchHhhhc--cHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHH
Confidence 99999999998777775 9999999999999998777777777 56899999999999999999988887 89888765
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.36 E-value=1.5e-09 Score=147.64 Aligned_cols=286 Identities=10% Similarity=0.039 Sum_probs=146.0
Q ss_pred HHHHHHHHcCCCHHHHHHhhhc--eEEEeCCceEEccCChhhHhhhHHHHHHHHHHHHHhHHHHhhccccccCCCCCeEE
Q 000468 353 HLNTTAELLKCDAKSLEDALIN--RVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTII 430 (1473)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~L~~--r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~I 430 (1473)
.+..|-..||+++++....+-- -.+..|+-.+...-..++|.-.....|-.+-. |+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceecc
Confidence 4667778999999877655321 11112221222111344444333333322211 1111122222222211 12245
Q ss_pred EeecccccccCCCCchhhhhhhhchhhhhhhhhhhhhhhhHhhhhhcCCccccccccchHHHHHHhhcCCCccccchhhh
Q 000468 431 GVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEA 510 (1473)
Q Consensus 431 giLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dN~~~idlie~k~~Gil~lLdee 510 (1473)
+-.++.|+..++ .++|=+-|...-...+|. ....+...+++|+ .+-+.+|.+++-...=||.+
T Consensus 401 ~e~v~k~q~~~q--------~~~~v~alAk~lYerlF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---- 463 (1930)
T KOG0161|consen 401 REWVSKAQNVEQ--------VLFAVEALAKALYERLFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---- 463 (1930)
T ss_pred chhhhhcchHHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc----
Confidence 566777776443 667777777666666664 6677888899987 45556666666332223322
Q ss_pred ccCCCCchHHH-----HHHHHHHhcCCCCCCCC----CCCCCceEEEecccceeeehhhHhhhccccchHHHHHHH----
Q 000468 511 CMFPKSTHETF-----AQKLYQTFKSNKRFIKP----KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLL---- 577 (1473)
Q Consensus 511 ~~~p~~td~~f-----~~kl~~~~~~~~~f~~p----~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll---- 577 (1473)
.|-+.+ .+||.+-| +|.-|..- +--+-.|..-||+ -=-=.+.+-|+|=. .+..+|
T Consensus 464 -----nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidfG-~Dlq~~idLIEkp~-----Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 -----NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDFG-LDLQPTIDLIEKPM-----GILSLLDEEC 531 (1930)
T ss_pred -----CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeeccc-cchhhhHHHHhchh-----hHHHHHHHHH
Confidence 121111 13333333 34344321 0112467777872 22222333444422 333333
Q ss_pred ---hhCCchhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchhhHHHhhhcc
Q 000468 578 ---TASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCG 654 (1473)
Q Consensus 578 ---~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~ 654 (1473)
.++...|+..|+..-. ++.++|.... +.+....+..++-+.+ |+|.-||-..++..-.+..|+.+|+|+
T Consensus 532 ~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred hcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhc
Confidence 2344445544443210 1222332221 3444555555555555 999999999888888899999999999
Q ss_pred chhHHHHHHhhcCCcccchHHHHhhhcc
Q 000468 655 GVLEAIRISCAGYPTRRTFYEFLHRFGV 682 (1473)
Q Consensus 655 gvle~iri~~~Gyp~r~~~~~F~~ry~~ 682 (1473)
+ .+-|..--.| +..+..+..++..
T Consensus 604 ~-~~~v~~l~~~---~~~~~~~~~~~~~ 627 (1930)
T KOG0161|consen 604 T-NKLVSSLFQD---YAGAAAAAKGGEA 627 (1930)
T ss_pred c-cHHHHHHhhh---hhccchhhhhhhh
Confidence 9 8887766555 5555555555543
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.72 E-value=1.9e-08 Score=110.03 Aligned_cols=90 Identities=26% Similarity=0.311 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhcc-CcccccCC
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG-NAKTVRNN 210 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEAFG-NAkT~rN~ 210 (1473)
||+.+..++..|+ ++.|+||+..|+||||||+|..--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 9999889999998 5799999999999999998854110 00000012233 3778889999999 99999999
Q ss_pred CCCCcceEEEEEEcCCCccc
Q 000468 211 NSSRFGKFVELQFDKNGRIS 230 (1473)
Q Consensus 211 NSSRfGk~~~l~f~~~g~i~ 230 (1473)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999998655444
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.42 E-value=1.3e-06 Score=111.71 Aligned_cols=87 Identities=32% Similarity=0.385 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000468 783 REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQ 862 (1473)
Q Consensus 783 ~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aRr~~~~lk~~~AAv~IQa~~R~~~~r~~y~~~~ka~i~iQ 862 (1473)
..++++.||+.+|+|..|+.|...|++++.+|+.+||.++|+ ..+ ++.||+.||+.||++..|++|...+.+++.+|
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~q 748 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQ 748 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999 334 78999999999999999999999999999999
Q ss_pred hhhHHHHHHH
Q 000468 863 CGWRRRVARR 872 (1473)
Q Consensus 863 ~~~R~~~ark 872 (1473)
+..|++.+|+
T Consensus 749 s~~r~~~~r~ 758 (862)
T KOG0160|consen 749 SGVRAMLARN 758 (862)
T ss_pred HHHHHHHhcc
Confidence 9999999988
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.38 E-value=5.2e-07 Score=115.28 Aligned_cols=118 Identities=21% Similarity=0.283 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchhhHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHH
Q 000468 735 LGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRR--------EAAALKIQKNFHSYTARTSYLTA 806 (1473)
Q Consensus 735 l~~aa~~IQk~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~~~r~--------~~AAi~IQ~~~R~~~~Rr~y~~~ 806 (1473)
...+|..||+.+|+|..|+.|+.+|.-++.||+.+||+..|+.|..+-. -.++.++|+.+|+|+.|+.+...
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 3578899999999999999999999999999999999999999876421 12344455555555555444444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 807 RSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYK 852 (1473)
Q Consensus 807 r~aai~IQs~~Rg~~aRr~~~~lk~~~AAv~IQa~~R~~~~r~~y~ 852 (1473)
-.+++.||.++|-+..-++.-..+.++|++.||+.+|.+.++..|+
T Consensus 889 ~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 889 ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4344444444444433333333333444444444444444443333
No 29
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.25 E-value=0.00053 Score=90.98 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000468 786 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQ 862 (1473)
Q Consensus 786 AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aRr~~~~lk~~~AAv~IQa~~R~~~~r~~y~~~~ka~i~iQ 862 (1473)
.++.||+.|||+..|++|.+....+..+|...+|+..|+.+..-....+++.+|..|+....|..|+.....+..+|
T Consensus 747 ~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq 823 (1463)
T COG5022 747 IATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ 823 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555444444444455555555555555555555555555555
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.16 E-value=5.4e-06 Score=67.95 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCCeEEEEEEEEcCCeEEEEeCCCcEEEEeCC
Q 000468 10 GSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVITNIS 50 (1473)
Q Consensus 10 g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~~~~~ 50 (1473)
+.+|||||++++|+.|+|++.+|+.++|++.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999888754
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.94 E-value=1.1e-05 Score=103.60 Aligned_cols=142 Identities=21% Similarity=0.202 Sum_probs=107.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Q 000468 731 RAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTA---- 806 (1473)
Q Consensus 731 R~~~l~~aa~~IQk~~R~~~~Rk~y~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~~---- 806 (1473)
+.......+..++..++++-.|.. -.++..||..+|||+.|+.|..+|+ -++.||+.+|+|..|+.|.++
T Consensus 786 ~i~~~~~~~m~~~~a~~~~~~r~~----~~aa~~iq~~f~~yk~r~~~l~tr~--p~v~iqa~~rg~q~r~dy~ki~wSv 859 (975)
T KOG0520|consen 786 QISEELAVSMKASSAFSMCDDRSD----PAAASRIQKKFRGYKQRKEFLSTRQ--PIVKIQAAVRGYQVRKDYRKITWSV 859 (975)
T ss_pred hhhhhhhhhhhcccchhcCccccc----hhHHHHhhhhhhhHHhhhhhcccCC--ccccchhhhhchhHhhhhheechhh
Confidence 333344445556666654444332 3678888999999999888887774 568899999999999888753
Q ss_pred ------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000468 807 ------RSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTAC--SYYKSLKKAAVITQCGWRRRVARRELRNLK 878 (1473)
Q Consensus 807 ------r~aai~IQs~~Rg~~aRr~~~~lk~~~AAv~IQa~~R~~~~r--~~y~~~~ka~i~iQ~~~R~~~arkel~~Lk 878 (1473)
..++-.+|..+||+..|+...+. +.||+.||...+.|+.- ..|.++.+|++.||+.+|...++.+++++.
T Consensus 860 ~~lek~~lrwR~k~~g~Rgfk~~~~~e~~--~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 860 GVLEKLILRWRRKGKGFRGFKGRALFEEQ--ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hHHHHHHHHHHHhhhhhcccccccchhcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455778888888888776543 34889999999999887 788999999999999999999998888766
Q ss_pred HH
Q 000468 879 MA 880 (1473)
Q Consensus 879 ~~ 880 (1473)
..
T Consensus 938 ~~ 939 (975)
T KOG0520|consen 938 LV 939 (975)
T ss_pred HH
Confidence 44
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.38 E-value=0.16 Score=64.80 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=22.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCCHHH
Q 000468 1317 ALIAHWQSIVKSLNSYLKTMKVNYVPPFL 1345 (1473)
Q Consensus 1317 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l 1345 (1473)
+|...+.+.+..+|+.+..+....++++.
T Consensus 896 ~p~~~lr~sleq~nstl~ll~~~~~~~Ey 924 (1243)
T KOG0971|consen 896 SPYECLRQSLEQLNSTLNLLATAMQEGEY 924 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35667889999999999998887766543
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.032 Score=69.65 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=13.9
Q ss_pred cCCCCCccchhHHhhchHHHHHH
Q 000468 1368 RRECCSFSNGEYVKAGLAELEQW 1390 (1473)
Q Consensus 1368 Rr~~Cs~s~G~qIr~nls~Le~W 1390 (1473)
.++-.-|=-|.=+.-|=-+.--|
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GW 1030 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGW 1030 (1118)
T ss_pred ecCCCccchhhHhhcCCcccccc
Confidence 35666676676666555555555
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.21 E-value=0.13 Score=65.57 Aligned_cols=66 Identities=21% Similarity=0.419 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 872 RELRNLKMAARETGALKEAKDKLEKRVEELTWRLQ---FEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEA 940 (1473)
Q Consensus 872 kel~~Lk~~a~e~~~l~~~~~~LE~kv~eL~~~l~---~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~ 940 (1473)
|++.+-|.++++. ++.+++...++.++...++ ..+.+..+.-+....|...+++++++|+..+|-+
T Consensus 283 rel~raR~e~kea---qe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 283 RELKRARKEAKEA---QEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 4444444444444443333 2222222222233344444555555554444433
No 35
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.17 E-value=0.0001 Score=97.33 Aligned_cols=268 Identities=13% Similarity=0.034 Sum_probs=182.1
Q ss_pred chhHHHHHHHHHHHHHHccCCCeeEEecCCCCCCCCCCCchh-hHHHhhhccchhHHHHHHhhcCCcccchHHHHhhhcc
Q 000468 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENA-NIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGV 682 (1473)
Q Consensus 604 tv~~~fk~~L~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~-~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 682 (1473)
+++..++-++.+....|-+..+||.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++++++.
T Consensus 643 ~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1062)
T KOG4229|consen 643 KVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKN 722 (1062)
T ss_pred cccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhccccc
Confidence 355666678888888888899999999999999999999988 7999999999999999999999999999999887764
Q ss_pred cccCccCCCCchHHHHHHHHHhcCCCCcccccceeeeccchhhH-----HHHHHHHHh---------------------h
Q 000468 683 LAPDVLDGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAE-----LDARRAEVL---------------------G 736 (1473)
Q Consensus 683 l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~-----LE~~R~~~l---------------------~ 736 (1473)
..-.....+.-...+|..++++-+.+.+..+.+++|.+..--.. .|..=...+ .
T Consensus 723 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~ 802 (1062)
T KOG4229|consen 723 SEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKL 802 (1062)
T ss_pred ccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccc
Confidence 32111111111244566777777777788888887775421111 111000000 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHhHhhhhcccchhhHHHH--------------------------------
Q 000468 737 NAARIIQRQIRTYIARKEFIAL----RKAAIVLQSYWRGILACKLYEQ-------------------------------- 780 (1473)
Q Consensus 737 ~aa~~IQk~~R~~~~Rk~y~~~----r~aai~IQa~~Rg~laRk~~~~-------------------------------- 780 (1473)
..+..||+-++....+..+... -...+.+|..|=|...+...+.
T Consensus 803 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~ 882 (1062)
T KOG4229|consen 803 ESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEF 882 (1062)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhe
Confidence 2344556655554444443222 1355556666665443332110
Q ss_pred ------------------------------HHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000468 781 ------------------------------LRREAA---ALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFR 827 (1473)
Q Consensus 781 ------------------------------~r~~~A---Ai~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aRr~~~ 827 (1473)
+.++.. +...|++++....++.+.++....+.+| +++.+.|+.-.
T Consensus 883 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~ 960 (1062)
T KOG4229|consen 883 STLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCP 960 (1062)
T ss_pred eecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCc
Confidence 111111 3457888888888899999999999999 77777776443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000468 828 -FRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVARRE 873 (1473)
Q Consensus 828 -~lk~~~AAv~IQa~~R~~~~r~~y~~~~ka~i~iQ~~~R~~~arke 873 (1473)
......+++-+|..|+.+..+..+...++..+.+|..++...-...
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 961 VAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMI 1007 (1062)
T ss_pred chhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhh
Confidence 3445678888999999999999999999999999988877655443
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.08 E-value=0.11 Score=67.76 Aligned_cols=144 Identities=19% Similarity=0.250 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000468 880 AARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAP 959 (1473)
Q Consensus 880 ~a~e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~~~~~~ee~~ 959 (1473)
...++..++..++.|++++.+|....+.++.....+|.....| +.....+|+||.+.+..-.+|.+..........
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE----~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~ 533 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE----RRQRASLEKQLQEERKARKEEEEKAARALAQAQ 533 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHhhhhccccch
Confidence 3455667777788888888888877666655444444433322 223334555544433222222111111100000
Q ss_pred CcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHH
Q 000468 960 PIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEV-------RNTELVKKLEDTEEKVGQLQE 1029 (1473)
Q Consensus 960 ~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~-------~~~~~~~~L~~~e~el~~L~~ 1029 (1473)
.... ..-+..+....+|+.|..+|+.++...++++..++++..++.. +.+.++..|..++++..+|++
T Consensus 534 ~~r~--e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 534 ATRQ--ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred hccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0111235666788888888888887777777777776643322 234455555555555555544
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.89 E-value=0.92 Score=60.17 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhHHHhhhhhccCCCC
Q 000468 1346 VRKVFTQIFSFINVQLFNSLLLRRECC 1372 (1473)
Q Consensus 1346 i~q~f~Qlf~~In~~~fN~LllRr~~C 1372 (1473)
-.|=|+-+..+-...-|+.+|-.|.+|
T Consensus 931 ~~qk~r~~~~~~~~~~F~~~l~~R~~s 957 (1074)
T KOG0250|consen 931 KYQKFRKLLTRRATEEFDALLGKRGFS 957 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 333444444445555555555555544
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.4 Score=62.35 Aligned_cols=21 Identities=24% Similarity=0.714 Sum_probs=16.1
Q ss_pred ecCCCCCCchhhHHHHHHHHHHhcC
Q 000468 154 VSGESGAGKTETTKMLMRYLAYLGG 178 (1473)
Q Consensus 154 isGESGAGKTes~k~im~yla~~~~ 178 (1473)
|+|=.||||+- |+.-++++=|
T Consensus 30 ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHc
Confidence 58999999996 6666777644
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.83 E-value=4.7 Score=56.65 Aligned_cols=8 Identities=38% Similarity=0.858 Sum_probs=3.3
Q ss_pred cccccccC
Q 000468 434 DIYGFESF 441 (1473)
Q Consensus 434 Di~GFE~f 441 (1473)
.|.||-+|
T Consensus 6 ~l~nf~s~ 13 (1164)
T TIGR02169 6 ELENFKSF 13 (1164)
T ss_pred EEeCeeeE
Confidence 34444443
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.82 E-value=4.8 Score=56.57 Aligned_cols=7 Identities=0% Similarity=0.254 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 000468 520 TFAQKLY 526 (1473)
Q Consensus 520 ~f~~kl~ 526 (1473)
++++.+.
T Consensus 38 ~ildAi~ 44 (1164)
T TIGR02169 38 NIGDAIL 44 (1164)
T ss_pred HHHHHHH
Confidence 3444443
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=2.9 Score=53.21 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 881 ARETGALKEAKDKLEKRVEELTWRLQF 907 (1473)
Q Consensus 881 a~e~~~l~~~~~~LE~kv~eL~~~l~~ 907 (1473)
..+.+.|......|+.++.+....+..
T Consensus 443 ~~eletLn~k~qqls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 443 QQELETLNFKLQQLSGKLQDVRVDITT 469 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhhhheeccch
Confidence 344455555555566555555544443
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.76 E-value=0.39 Score=62.74 Aligned_cols=68 Identities=9% Similarity=0.167 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000468 981 EVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1473)
Q Consensus 981 E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L 1048 (1473)
+.+.|-..|..++++...||..+..-..-..++-..|-+...+++-++..+..-+.+|.+|+..+..+
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666544444456666777777777777777777777777776655443
No 43
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.62 E-value=0.29 Score=51.49 Aligned_cols=130 Identities=22% Similarity=0.340 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Q 000468 886 ALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKET 965 (1473)
Q Consensus 886 ~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~~~~~~ee~~~~~~e~ 965 (1473)
.+......++.++.++..+.. .+..++..|+..+..++.+++.+...+..-+.. +++.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~----lee~------- 68 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK----LEES------- 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhH-------
Confidence 344455556665555555433 234466677777777777777766665332222 2221
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000468 966 PVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCN 1040 (1473)
Q Consensus 966 ~~l~~~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~e 1040 (1473)
+......+.|+..+..|..+++....++....+++..+....+...+++..++.+...+...++.|+.+..+
T Consensus 69 ---~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 69 ---EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred ---HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 011233346666777777777777777777777666666555555566666666666666666666555443
No 44
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.55 E-value=0.012 Score=72.98 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 000468 783 REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKS--------- 853 (1473)
Q Consensus 783 ~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aRr~~~~lk~~~AAv~IQa~~R~~~~r~~y~~--------- 853 (1473)
...-++.||+.||||.+|.+|++++.+++.|+ +||++..| .++-.||..+|++..++.|.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~ 764 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPPL 764 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCch
Confidence 34467789999999999999999999888888 77754333 334457888888888887754
Q ss_pred -HHHHHHHHhhhhHHHHHHHHH
Q 000468 854 -LKKAAVITQCGWRRRVARREL 874 (1473)
Q Consensus 854 -~~ka~i~iQ~~~R~~~arkel 874 (1473)
++++...+|..+-++.|.+-+
T Consensus 765 ~Lr~~~~~L~~lf~rwra~~~~ 786 (1001)
T KOG0164|consen 765 VLREFEELLRELFIRWRAWQIL 786 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544444444433
No 45
>PRK11637 AmiB activator; Provisional
Probab=96.54 E-value=0.58 Score=58.33 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000468 1022 EKVGQLQESMQRLEEKLCN 1040 (1473)
Q Consensus 1022 ~el~~L~~~~~~Leekl~e 1040 (1473)
.++..|..+...|+..|.+
T Consensus 233 ~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 233 QQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 46
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.51 E-value=0.0033 Score=43.71 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000468 785 AAALKIQKNFHSYTARTSY 803 (1473)
Q Consensus 785 ~AAi~IQ~~~R~~~~Rr~y 803 (1473)
.||++||+.||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666665
No 47
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.50 E-value=0.86 Score=57.36 Aligned_cols=58 Identities=9% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 789 KIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLK 855 (1473)
Q Consensus 789 ~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aRr~~~~lk~~~AAv~IQa~~R~~~~r~~y~~~~ 855 (1473)
.|+ .+-.|+.+.+|.+...++..+=. -+.+. .-+..+.+++|++.|||++|++++..-
T Consensus 779 lv~-kVn~WLv~sRWkk~q~~a~sVIK------LkNkI--~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 779 LVA-KVNKWLVRSRWKKSQYGALSVIK------LKNKI--IYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHH-HHHHHHHHhHHHHhhhhhhheee------hhhHH--HHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 344 45678888888876554432211 01111 122345667899999999988776543
No 48
>PRK11637 AmiB activator; Provisional
Probab=96.43 E-value=0.57 Score=58.34 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000468 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1473)
Q Consensus 1017 L~~~e~el~~L~~~~~~Leekl~ele~en~~L 1048 (1473)
+..++.++......+..|+.+...+...+..+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555444444444433
No 49
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.30 E-value=9.6 Score=53.70 Aligned_cols=29 Identities=38% Similarity=0.658 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000468 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESE 1044 (1473)
Q Consensus 1016 ~L~~~e~el~~L~~~~~~Leekl~ele~e 1044 (1473)
++.+++.++..+++....++.++.+.+..
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (1163)
T COG1196 461 RLKELERELAELQEELQRLEKELSSLEAR 489 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333
No 50
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.28 E-value=0.12 Score=69.29 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHhHhhhhcccchhhHHHHH----H-HhHHHHHHHHHHHHHHH----HHHHHHHH
Q 000468 742 IQRQIRTYIARKEFIAL-----RKAAIVLQSYWRGILACKLYEQL----R-REAAALKIQKNFHSYTA----RTSYLTAR 807 (1473)
Q Consensus 742 IQk~~R~~~~Rk~y~~~-----r~aai~IQa~~Rg~laRk~~~~~----r-~~~AAi~IQ~~~R~~~~----Rr~y~~~r 807 (1473)
.|.-+|+...|..--.+ ..-...+|+..||+..|..++.. + +.-....||..|||++. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 56666666655432211 12223448889998888776542 2 33456678999998873 23344566
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 808 SSAIQLQTGLRAMVARNEFRFRKQ-----TKAAIIIEAYLRRHTACSYYKSLK 855 (1473)
Q Consensus 808 ~aai~IQs~~Rg~~aRr~~~~lk~-----~~AAv~IQa~~R~~~~r~~y~~~~ 855 (1473)
..++.+|+..||.++|+.+....+ ..+.+.||++.|....|..|+.+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 778888999999998887754332 345556666666666666665554
No 51
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.27 E-value=0.0054 Score=42.63 Aligned_cols=19 Identities=53% Similarity=0.705 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 000468 737 NAARIIQRQIRTYIARKEF 755 (1473)
Q Consensus 737 ~aa~~IQk~~R~~~~Rk~y 755 (1473)
++|++||+.||||++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4666777777777777666
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.23 E-value=11 Score=53.73 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000468 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1473)
Q Consensus 1011 ~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~ 1049 (1473)
+++...+.+.+++...+..++..++.++..++.+...+.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555444443
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.11 E-value=4.5 Score=48.15 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 880 AARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEE 918 (1473)
Q Consensus 880 ~a~e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~ 918 (1473)
...+...+......+...+.++..+++.+...+..++..
T Consensus 66 ~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~e 104 (312)
T PF00038_consen 66 LSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEE 104 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777777777777665555555443
No 54
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=3.3 Score=54.46 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000468 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1473)
Q Consensus 975 ~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~ 1043 (1473)
...+..+...|+.++..++.++...+....++.....+...++.+...++..+....+....+..+++.
T Consensus 838 l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l 906 (1174)
T KOG0933|consen 838 LEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGEL 906 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccc
Confidence 333344444444444444444444444333333333333344444444554444444444444443333
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.05 E-value=3.6 Score=57.76 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.8
Q ss_pred eEEEecCCCCCCchhhHHH
Q 000468 150 NSILVSGESGAGKTETTKM 168 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~ 168 (1473)
-..+|.|++|||||.....
T Consensus 24 ~~~~i~G~NGsGKS~ll~a 42 (1179)
T TIGR02168 24 GITGIVGPNGCGKSNIVDA 42 (1179)
T ss_pred CcEEEECCCCCChhHHHHH
Confidence 3789999999999996543
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=9.6 Score=51.25 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=6.9
Q ss_pred cchhhHHHHH
Q 000468 721 AGQMAELDAR 730 (1473)
Q Consensus 721 ~~~~~~LE~~ 730 (1473)
.|.+.|||..
T Consensus 250 ~GmLEYLEDI 259 (1293)
T KOG0996|consen 250 EGMLEYLEDI 259 (1293)
T ss_pred chHHHHHHHH
Confidence 4677777764
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.95 E-value=12 Score=52.74 Aligned_cols=111 Identities=7% Similarity=0.066 Sum_probs=57.4
Q ss_pred hHHHHHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHhHHH----hhhhhcc-------CCCCCccchhHHhhchHH
Q 000468 1321 HWQSIVKSLN---SYLKTMKVNYVPPFLVRKVFTQIFSFINVQL----FNSLLLR-------RECCSFSNGEYVKAGLAE 1386 (1473)
Q Consensus 1321 ~~~~il~~L~---~~~~~l~~~~v~~~li~q~f~Qlf~~In~~~----fN~LllR-------r~~Cs~s~G~qIr~nls~ 1386 (1473)
.|.+|-.|=. .+........||+.=.-..+..+..+|+..- +++|+-= ..--.|.|.-+++
T Consensus 1044 ~w~~Lk~F~~~~~~w~~~~~~~~lP~e~~~~~l~~l~~~l~~~~~~~~l~~l~~le~~v~Eng~~~~~rn~~~L~----- 1118 (1201)
T PF12128_consen 1044 FWKPLKQFSDEYELWRSSDGSRELPSEEYVNALRELLDILPSGGFSLSLEDLFDLEFRVKENGNDKVIRNDRQLN----- 1118 (1201)
T ss_pred cHHHHHHHHHHHHHHhcccCcccCCCHHHHHHHHHHHHHHhhccccccHHHHeeeEEEEEECCcccccccHHHHH-----
Confidence 4655543333 2222344456999966778888888887633 3333221 1112222222221
Q ss_pred HHHHHhhhccccccchHhhhHhHHHHHHhHhcccCCcCCHHHHHhccCC-----CCCHHHHHHHHhcCcc
Q 000468 1387 LEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCP-----VLSIQQLYRISTMYWD 1451 (1473)
Q Consensus 1387 Le~W~~~~~~~~~~~a~~~L~~l~QA~~lL~~~kk~~~~~~~i~~~~C~-----~Ls~~Qi~kil~~Y~~ 1451 (1473)
..+.+-+-.|+.+.=++-+-..-..+.+-. =.|| .|.|.=+.+|+.|...
T Consensus 1119 -------------~vsS~G~syLi~~~~~i~l~~~lr~~~~~~--ihwpiDEiG~L~~~Nv~~l~~~~~~ 1173 (1201)
T PF12128_consen 1119 -------------NVSSHGTSYLILCMFFIALTRMLRGDADFR--IHWPIDEIGKLHPNNVKKLLDMCNS 1173 (1201)
T ss_pred -------------hcCCchHHHHHHHHHHHHHHHHhcCCCCeE--EEeeehhhccCChHHHHHHHHHHHh
Confidence 112255667777655543221111232211 1466 7999999999998865
No 58
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.77 E-value=0.0084 Score=71.74 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=43.0
Q ss_pred ecCCCCCCCCCCHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHH
Q 000468 102 INPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTK 167 (1473)
Q Consensus 102 vNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k 167 (1473)
+|||...| |+......++. +.+||-|-|. +.-|..-..||+||++||.|||||+-.-
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~k-----~~F~~~l~~nQ~~v~vGetgsGKttQiP 80 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQK-----EEFLKLLLNNQIIVLVGETGSGKTTQIP 80 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHhH-----HHHHHHHhcCceEEEEecCCCCccccCc
Confidence 99999998 88766555543 4567766543 5556666789999999999999998543
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.77 E-value=12 Score=50.28 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000468 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1473)
Q Consensus 1011 ~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~ 1046 (1473)
++..+++++.+++....+.....++.++..-..++.
T Consensus 425 ~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~ 460 (1074)
T KOG0250|consen 425 NEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELK 460 (1074)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.60 E-value=9.8 Score=48.10 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000468 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR----NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~----~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~ 1046 (1473)
.+..+..|+.++..+...+.+.......++.++...... ..+...+|.+++.-+.-++.+.++|.++-.+|.....
T Consensus 369 ~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 369 DKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776666666666666666543322 1233334444444333344444444444444444444
Q ss_pred HHH
Q 000468 1047 VIR 1049 (1473)
Q Consensus 1047 ~L~ 1049 (1473)
.|.
T Consensus 449 ~Le 451 (546)
T PF07888_consen 449 RLE 451 (546)
T ss_pred HHH
Confidence 433
No 61
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.56 E-value=0.19 Score=67.59 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=78.3
Q ss_pred HHHHhHhhhhcccchhhHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHH--HHHHHH
Q 000468 760 KAAIVLQSYWRGILACKLYEQLRREAA---ALKIQKNFHSYTARTSYLTA-------RSSAIQLQTGLRAMV--ARNEFR 827 (1473)
Q Consensus 760 ~aai~IQa~~Rg~laRk~~~~~r~~~A---Ai~IQ~~~R~~~~Rr~y~~~-------r~aai~IQs~~Rg~~--aRr~~~ 827 (1473)
..-+..|+..||...|.....+-...+ -.+||+..||+..|..+... -..+.-+|+.|||++ +-+...
T Consensus 508 ~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~ 587 (1401)
T KOG2128|consen 508 SSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVY 587 (1401)
T ss_pred HHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHH
Confidence 344556777777666654433322221 13468888888877665532 235678899999888 333223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHH
Q 000468 828 FRKQTKAAIIIEAYLRRHTACSYYKSLK-------KAAVITQCGWRRRVARRELRNLKM 879 (1473)
Q Consensus 828 ~lk~~~AAv~IQa~~R~~~~r~~y~~~~-------ka~i~iQ~~~R~~~arkel~~Lk~ 879 (1473)
..-...-++.+|++.|++..|+.|.+.. ..++.+|+..|...+++.++.|.-
T Consensus 588 ~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 588 LDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 3344566788899999988887665443 577888999888888888877653
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.48 E-value=14 Score=49.00 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 000468 885 GALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEE---KAQEIAKLQDALQAM 933 (1473)
Q Consensus 885 ~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~---k~~e~~~L~~~~eeL 933 (1473)
..+...+..|+.|+++|..++........+++.. ...|.++|+++.+..
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555678888888887776554444443332 223444444444433
No 63
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.46 E-value=2.3 Score=54.99 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000468 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR-------NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~-------~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~ 1043 (1473)
++..+...-.++..||.++.+++...-.+..+..++... ..++..++.+++.++..+.+.+..-.+++..+..
T Consensus 151 dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 151 DKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455555566666666666655444444333322221 2234444445555555544444443334444433
No 64
>PRK02224 chromosome segregation protein; Provisional
Probab=95.44 E-value=15 Score=50.17 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhcCCCH
Q 000468 1325 IVKSLNSYLKTMKVNYVPP 1343 (1473)
Q Consensus 1325 il~~L~~~~~~l~~~~v~~ 1343 (1473)
+...+..+-..++..++++
T Consensus 720 L~~~~~~~~~~~~~~~~~~ 738 (880)
T PRK02224 720 LESMYGDLRAELRQRNVET 738 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554
No 65
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.38 E-value=0.9 Score=54.76 Aligned_cols=105 Identities=17% Similarity=0.267 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 000468 882 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPI 961 (1473)
Q Consensus 882 ~e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~~~~~~ee~~~~ 961 (1473)
..+..|+-.+.-||+++++|+.+...++. ..+-+.+|+..+++|-.. +-++.-|+......+..+...
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv--------fvDiinkLk~niEeLIed----KY~viLEKnd~~k~lqnLqe~ 398 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMKITKQQV--------FVDIINKLKENIEELIED----KYRVILEKNDIEKTLQNLQEA 398 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHh----HhHhhhhhhhHHHHHHHHHHH
Confidence 34567777888899999999887664432 122344455555444322 222222333333222222111
Q ss_pred ccc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 962 VKE-TPVIVHDTEKIESLTAEVDSLKALLLSERQSAEE 998 (1473)
Q Consensus 962 ~~e-~~~l~~~~~~~~~L~~E~~~Lk~~l~~l~~~~~~ 998 (1473)
... ...+++.+.+.+.|+.|+++.+..+..|++++-.
T Consensus 399 la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 399 LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 1224445666678888888888888888877664
No 66
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.36 E-value=4.1 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 977 SLTAEVDSLKALLLSERQSAEEARKA 1002 (1473)
Q Consensus 977 ~L~~E~~~Lk~~l~~l~~~~~~l~~~ 1002 (1473)
.|+.++..+++.-+.+++.++++++.
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.35 E-value=21 Score=50.43 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhHhhh
Q 000468 754 EFIALRKAAIVLQSY 768 (1473)
Q Consensus 754 ~y~~~r~aai~IQa~ 768 (1473)
.+..++..+..++..
T Consensus 240 ~~~~~r~~~~~l~~~ 254 (1201)
T PF12128_consen 240 GFEKVRPEFDKLQQQ 254 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.29 E-value=2.9 Score=47.46 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAE 1007 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~ 1007 (1473)
..+.+.|+.|...++....+++..+.++..+..+++
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444444444444444333
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.29 E-value=2.3 Score=54.85 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAE 997 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~ 997 (1473)
...+..|.++...++.++..++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666555555554444
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.19 E-value=5 Score=48.16 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 000468 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQL 1027 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L 1027 (1473)
+..+++.++.++..++.++...++.+.+++.++.......++...+..+++.++..+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655555555555555444443333333333344444333
No 71
>PRK03918 chromosome segregation protein; Provisional
Probab=95.18 E-value=2.2 Score=58.22 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.4
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000468 151 SILVSGESGAGKTETTKML 169 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~i 169 (1473)
-.+|+|++|||||.....|
T Consensus 25 ~~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAI 43 (880)
T ss_pred cEEEEcCCCCCHHHHHHHH
Confidence 3579999999999977643
No 72
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.17 E-value=6.5 Score=46.93 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEA 999 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l 999 (1473)
...++.|+.|+.+|+..+...++.+.+.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777777777776666665543
No 73
>PRK09039 hypothetical protein; Validated
Probab=95.17 E-value=0.92 Score=54.72 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000468 892 DKLEKRVEELTWRLQFEK 909 (1473)
Q Consensus 892 ~~LE~kv~eL~~~l~~e~ 909 (1473)
..|+.++.+|..-+..++
T Consensus 56 ~~L~~qIa~L~e~L~le~ 73 (343)
T PRK09039 56 DRLNSQIAELADLLSLER 73 (343)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444545544444433
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=95.09 E-value=8.5 Score=52.60 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=5.3
Q ss_pred eeeccchhh
Q 000468 717 VFLRAGQMA 725 (1473)
Q Consensus 717 VFlr~~~~~ 725 (1473)
||++.|.+.
T Consensus 133 ~~i~Qge~~ 141 (880)
T PRK02224 133 AYVRQGEVN 141 (880)
T ss_pred eEeeccChH
Confidence 566666553
No 75
>PTZ00014 myosin-A; Provisional
Probab=94.99 E-value=0.042 Score=72.70 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000468 786 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNE 825 (1473)
Q Consensus 786 AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aRr~ 825 (1473)
.+..||++||+|++|+.|++.+.+++.||+.+||++++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888888888888888877778888888888777754
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.88 E-value=8.9 Score=46.90 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 1013 ~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
+...+...+.++..|..+...|+.+|..++.+..+-+.
T Consensus 215 l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re 252 (420)
T COG4942 215 LNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666666677777766655544333
No 77
>PRK03918 chromosome segregation protein; Provisional
Probab=94.83 E-value=5.4 Score=54.47 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=8.2
Q ss_pred CCCccchhHHhhchH
Q 000468 1371 CCSFSNGEYVKAGLA 1385 (1473)
Q Consensus 1371 ~Cs~s~G~qIr~nls 1385 (1473)
.-++|.|++.+.+|+
T Consensus 786 ~~~lS~G~~~~~~la 800 (880)
T PRK03918 786 LTFLSGGERIALGLA 800 (880)
T ss_pred hhhCCHhHHHHHHHH
Confidence 344556666655554
No 78
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.81 E-value=21 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000468 885 GALKEAKDKLEKRVEELTWRLQ 906 (1473)
Q Consensus 885 ~~l~~~~~~LE~kv~eL~~~l~ 906 (1473)
.+|...-..+++++.-|++.++
T Consensus 173 ~hL~velAdle~kir~LrqElE 194 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELE 194 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666665555554
No 79
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.79 E-value=23 Score=47.89 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=4.0
Q ss_pred hhchHHHHHH
Q 000468 1381 KAGLAELEQW 1390 (1473)
Q Consensus 1381 r~nls~Le~W 1390 (1473)
.-|++.+|.=
T Consensus 941 q~~l~~le~~ 950 (1293)
T KOG0996|consen 941 QKKLSELERE 950 (1293)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=14 Score=46.51 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000468 882 RETGALKEAKDKLEKRV 898 (1473)
Q Consensus 882 ~e~~~l~~~~~~LE~kv 898 (1473)
.+.+.++..++.|.+++
T Consensus 308 eE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 308 EEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 81
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.71 E-value=0.032 Score=40.91 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 000468 784 EAAALKIQKNFHSYTARTSY 803 (1473)
Q Consensus 784 ~~AAi~IQ~~~R~~~~Rr~y 803 (1473)
..+|+.||+.||||++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777776
No 82
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.71 E-value=30 Score=49.39 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 846 TACSYYKSLKKAAVITQCGWRRRVARRELR--NLKMAARETGALKEAKDKLEKRVEELTWRLQ 906 (1473)
Q Consensus 846 ~~r~~y~~~~ka~i~iQ~~~R~~~arkel~--~Lk~~a~e~~~l~~~~~~LE~kv~eL~~~l~ 906 (1473)
.....+..+++.+..|+...+...-.+.|. +++...+.++.++.....|+.+-..|+..+.
T Consensus 658 ~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~ 720 (1822)
T KOG4674|consen 658 KLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTIS 720 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666554444344443 4444555666666666666655555554433
No 83
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.66 E-value=4.1 Score=44.45 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000468 976 ESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1473)
Q Consensus 976 ~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~~ 1052 (1473)
..+..|++.|+..+..+++....+-.+...++++...+..++..++++...+..+.+.+.++..+|-.++..|+.+.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34555666666666666666666555555555555666667777777777777777777777777766666665553
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.58 E-value=18 Score=45.76 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000468 1022 EKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1473)
Q Consensus 1022 ~el~~L~~~~~~Leekl~ele~en~~L~q~~ 1052 (1473)
+++..|..++..+++.+.+-..|..+|..+.
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554443
No 85
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=5.5 Score=49.07 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMD 1005 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~ 1005 (1473)
..++-+|+.+++.++.++..-+...+.+.+...+
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd 139 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSD 139 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666555555555554443
No 86
>PRK09039 hypothetical protein; Validated
Probab=94.30 E-value=5 Score=48.50 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000468 890 AKDKLEKRVEELTWRLQFEKQ 910 (1473)
Q Consensus 890 ~~~~LE~kv~eL~~~l~~e~~ 910 (1473)
....++.++.+++..+...+.
T Consensus 75 ~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 75 GNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 344555555555555554333
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.24 E-value=8.6 Score=49.60 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 000468 971 DTEKIESLTAEVDSLKALLL 990 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~ 990 (1473)
..+...+++.++..+...+.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444
No 88
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.14 E-value=9.5 Score=43.71 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000468 1023 KVGQLQESMQRLEEKLC 1039 (1473)
Q Consensus 1023 el~~L~~~~~~Leekl~ 1039 (1473)
.+..|+..++.|+.++.
T Consensus 198 ~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 89
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.01 E-value=7.4 Score=45.37 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~ 1006 (1473)
..+..+++|+..++.+++++...+.+.+++...+
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 4444555555555555555555555555544444
No 90
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.84 E-value=0.04 Score=55.48 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 91
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.82 E-value=5.9 Score=45.61 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000468 922 EIAKLQDALQAMQLQVEEA 940 (1473)
Q Consensus 922 e~~~L~~~~eeLe~qlee~ 940 (1473)
+..++++++++++..+.+.
T Consensus 81 eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 81 EIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 92
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.81 E-value=44 Score=47.25 Aligned_cols=8 Identities=50% Similarity=1.140 Sum_probs=3.1
Q ss_pred cccccccC
Q 000468 434 DIYGFESF 441 (1473)
Q Consensus 434 Di~GFE~f 441 (1473)
-+.||.+|
T Consensus 7 ~l~gFKSF 14 (1163)
T COG1196 7 ELKGFKSF 14 (1163)
T ss_pred EEECcccC
Confidence 33344333
No 93
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.78 E-value=14 Score=52.73 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.1
Q ss_pred eEEEecCCCCCCchhhHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLM 170 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im 170 (1473)
...+|+|++|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 477999999999998766554
No 94
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.73 E-value=1.5 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEE 998 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~ 998 (1473)
..+..|..++..++....+...++.+
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E 117 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEE 117 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333
No 95
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.67 E-value=0.074 Score=39.00 Aligned_cols=20 Identities=50% Similarity=0.662 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 000468 736 GNAARIIQRQIRTYIARKEF 755 (1473)
Q Consensus 736 ~~aa~~IQk~~R~~~~Rk~y 755 (1473)
.++|+.||+.||||++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777766
No 96
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.67 E-value=2.7 Score=54.08 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000468 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1473)
Q Consensus 1011 ~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~ 1051 (1473)
.....+++.+..++..+..++..-++...+|..+..++++.
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445666666666666666666666666666666655433
No 97
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.43 E-value=34 Score=44.66 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000468 998 EARKACMDAEVRNTELVKKLEDTEEKVGQLQES 1030 (1473)
Q Consensus 998 ~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~ 1030 (1473)
++.+++.+++.....+..+++.-.+++..|+.+
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444444444433333334444444444444443
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.36 E-value=19 Score=43.31 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=5.6
Q ss_pred ccchHHHHh
Q 000468 670 RRTFYEFLH 678 (1473)
Q Consensus 670 r~~~~~F~~ 678 (1473)
+++..+|+.
T Consensus 13 ~isL~~FL~ 21 (325)
T PF08317_consen 13 PISLQDFLN 21 (325)
T ss_pred CcCHHHHHH
Confidence 456666665
No 99
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.29 E-value=41 Score=45.31 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=25.5
Q ss_pred HhhccCccccccCCceEEecCCCCCCCCCCHHHHHHhh
Q 000468 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYK 121 (1473)
Q Consensus 84 ~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~ 121 (1473)
.||..-.+-|----|+=++-|--.+|+-|++++...-+
T Consensus 192 SrYS~~~PstgGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPSTGGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCCCCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 46666666443224567788888888889988766554
No 100
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.24 E-value=38 Score=44.67 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=8.2
Q ss_pred CCCCHHHHHH
Q 000468 1435 PVLSIQQLYR 1444 (1473)
Q Consensus 1435 ~~Ls~~Qi~k 1444 (1473)
+.||+.||++
T Consensus 935 S~ls~h~~K~ 944 (980)
T KOG0980|consen 935 SSLSLHQLKT 944 (980)
T ss_pred ccccHHHHHH
Confidence 7899988875
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.19 E-value=32 Score=43.77 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 884 TGALKEAKDKLEKRVEELTWRLQF 907 (1473)
Q Consensus 884 ~~~l~~~~~~LE~kv~eL~~~l~~ 907 (1473)
-..+++....+++++..|+..+..
T Consensus 191 ~~~~~~q~~~le~ki~~lq~a~~~ 214 (629)
T KOG0963|consen 191 EQNLQEQLEELEKKISSLQSAIED 214 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555566666666544443
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.10 E-value=33 Score=43.70 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=7.2
Q ss_pred CeEEEeecccccc
Q 000468 427 RTIIGVLDIYGFE 439 (1473)
Q Consensus 427 ~~~IgiLDi~GFE 439 (1473)
...+|+|||-|=+
T Consensus 9 ~sl~~~lDiq~~~ 21 (961)
T KOG4673|consen 9 VSLGGFLDIQGAV 21 (961)
T ss_pred hhhcccccccccc
Confidence 3456666666544
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.09 E-value=17 Score=47.07 Aligned_cols=72 Identities=13% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR---------NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~---------~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele 1042 (1473)
..++..++.+.+.+..++..-++.+..|..++..+.+. ..+..+.++..+++|.+...+...|++++..+.
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666655555555555666666555332 234555566666677776666666666665544
Q ss_pred H
Q 000468 1043 S 1043 (1473)
Q Consensus 1043 ~ 1043 (1473)
.
T Consensus 526 g 526 (594)
T PF05667_consen 526 G 526 (594)
T ss_pred H
Confidence 4
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.07 E-value=11 Score=45.05 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=5.7
Q ss_pred cccchHHHHh
Q 000468 669 TRRTFYEFLH 678 (1473)
Q Consensus 669 ~r~~~~~F~~ 678 (1473)
.+++..+|++
T Consensus 8 ~~isL~dFL~ 17 (312)
T smart00787 8 EPISLQDFLN 17 (312)
T ss_pred CCccHHHHHH
Confidence 3555666665
No 105
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.06 E-value=35 Score=46.48 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 000468 1030 SMQRLEEKLCNSESENQVI 1048 (1473)
Q Consensus 1030 ~~~~Leekl~ele~en~~L 1048 (1473)
+++.+++++.+...|++.+
T Consensus 675 ~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 675 KLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 106
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.04 E-value=23 Score=41.69 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=6.1
Q ss_pred HHHHHhhHHHHHHHH
Q 000468 1035 EEKLCNSESENQVIR 1049 (1473)
Q Consensus 1035 eekl~ele~en~~L~ 1049 (1473)
-+.+..|..+...|.
T Consensus 184 ~Kqm~~l~~eKr~Lq 198 (310)
T PF09755_consen 184 WKQMDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.03 E-value=9.1 Score=50.68 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.3
Q ss_pred ccCCCeeEEecCCCCCCCCCC
Q 000468 621 NSTEPHYIRCVKPNNALRPAI 641 (1473)
Q Consensus 621 ~~t~~hfIrCIkPN~~~~p~~ 641 (1473)
..|..+||.|-+|.....|..
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999977765543
No 108
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.94 E-value=2.4 Score=51.86 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
++...+.+|+.+|-+++.++++++..+..+..++...+..-...-++++.++..+++...+....+.+.++|++.|+.
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444556667777777777777777765555444433322222222334445555555555555555555555555543
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.94 E-value=21 Score=40.85 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000468 970 HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN 1010 (1473)
Q Consensus 970 ~~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~ 1010 (1473)
....++..++.....|..++..+.++...+++++..+....
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444433
No 110
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.82 E-value=0.068 Score=54.48 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35679999999999999999999987764
No 111
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.79 E-value=17 Score=47.97 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000468 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 1044 (1473)
Q Consensus 1012 ~~~~~L~~~e~el~~L~~~~~~Leekl~ele~e 1044 (1473)
++.+++++++.++..+..+...+++++..++.+
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433333
No 112
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.65 E-value=21 Score=41.64 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=27.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 1005 DAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 1005 ~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
++..+.+-+..+++..+..-+.|.+++.+|.+-+..++...+.++.
T Consensus 249 EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 249 EFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3333333344455555555566777777777777777776665543
No 113
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.64 E-value=34 Score=44.08 Aligned_cols=43 Identities=35% Similarity=0.344 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 881 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEI 923 (1473)
Q Consensus 881 a~e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~ 923 (1473)
+.+++.+......-..+.++|...+.-+...|..+++....|.
T Consensus 100 a~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~EL 142 (739)
T PF07111_consen 100 AEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQREL 142 (739)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHH
Confidence 3344444433333444555566555555555555555444433
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.60 E-value=28 Score=41.56 Aligned_cols=6 Identities=33% Similarity=1.160 Sum_probs=2.8
Q ss_pred hhHHHH
Q 000468 864 GWRRRV 869 (1473)
Q Consensus 864 ~~R~~~ 869 (1473)
.||..+
T Consensus 136 eWR~kl 141 (312)
T smart00787 136 EWRMKL 141 (312)
T ss_pred HHHHHH
Confidence 355543
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.50 E-value=39 Score=42.96 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 1022 EKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 1022 ~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
..+.....++..|++++..+..|.++|..
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455666666666666666666654
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=23 Score=46.03 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=21.8
Q ss_pred cceeeehhhHhhhccccchHHHHHHHhhCC
Q 000468 552 GEVTYLADLFLDKNKDYVVAEHQVLLTASK 581 (1473)
Q Consensus 552 g~V~Y~~~gfleKN~D~~~~~~~~ll~~S~ 581 (1473)
..|.|.-..|+-+|-|--.+=+..++..|.
T Consensus 388 cAv~ycf~s~l~dN~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 388 CAVLYCFRSYLYDNDDGQRKFLKTLLPSST 417 (970)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHhhhhc
Confidence 348899999999998876655556665543
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.44 E-value=47 Score=43.80 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 000468 1160 VFDRIIQTIASA 1171 (1473)
Q Consensus 1160 l~~~vi~~I~~~ 1171 (1473)
.+...+++|.+.
T Consensus 718 ~l~~~lq~~~~~ 729 (980)
T KOG0980|consen 718 LLRQYLQTLNQL 729 (980)
T ss_pred HHHHHHHHHHHH
Confidence 555666666553
No 118
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.40 E-value=30 Score=41.37 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDA-------EVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~-------~~~~~~~~~~L~~~e~el~~L~~~~~~Lee 1036 (1473)
..++.+++|+....+......+++......+... .....+...+|..+|.+...|+.++.+||.
T Consensus 210 ~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 210 NAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555544444433333333333333222 122233444555555555555555555554
No 119
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.39 E-value=73 Score=45.84 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 887 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAAR 952 (1473)
Q Consensus 887 l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~~~ 952 (1473)
|.....+|..+...|+..+..-+.....+++........+++.+++|+..+..++..+.++....+
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r 829 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLR 829 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444333334444444555666777777777777776666555444333
No 120
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.35 E-value=0.082 Score=57.11 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=22.7
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 144 ~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999999888764
No 121
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.14 E-value=0.13 Score=59.36 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999887764
No 122
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.11 E-value=0.094 Score=52.99 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999996
No 123
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.99 E-value=0.18 Score=51.29 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.4
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 146 ~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998875
No 124
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.76 E-value=5.2 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000468 977 SLTAEVDSLKALLLSERQSAEE 998 (1473)
Q Consensus 977 ~L~~E~~~Lk~~l~~l~~~~~~ 998 (1473)
..+.|+..|.+++.+++.+++.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555544444444
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.72 E-value=25 Score=39.06 Aligned_cols=70 Identities=27% Similarity=0.306 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR----NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~----~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele 1042 (1473)
..-++|..++..++..+.+...++..+++++.-.... ......+..++..++..|..++..|..++.+.+
T Consensus 118 ~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 118 AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777777777777777766544332 223334555666666666666666666665544
No 126
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.69 E-value=0.12 Score=56.14 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla 174 (1473)
+.|+|.|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877653
No 127
>PRK01156 chromosome segregation protein; Provisional
Probab=91.54 E-value=17 Score=49.84 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHhhhhhc--------------------cCCCCCccchhHHh
Q 000468 1322 WQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLL--------------------RRECCSFSNGEYVK 1381 (1473)
Q Consensus 1322 ~~~il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~~In~~~fN~Lll--------------------Rr~~Cs~s~G~qIr 1381 (1473)
....+..|+.+...|...++|..+- +...+.|.-.....|..+-+ ..+...+|.|++.+
T Consensus 731 ~~~~~~~l~~~r~~l~k~~~~~~I~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~ 809 (895)
T PRK01156 731 IKKAIGDLKRLREAFDKSGVPAMIR-KSASQAMTSLTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTA 809 (895)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHH-HHHHHHHHHHHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHH
Confidence 3455677788888888888877432 33233333222222222211 13577888999988
Q ss_pred hchH
Q 000468 1382 AGLA 1385 (1473)
Q Consensus 1382 ~nls 1385 (1473)
.+|.
T Consensus 810 ~~la 813 (895)
T PRK01156 810 VAFA 813 (895)
T ss_pred HHHH
Confidence 8775
No 128
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.54 E-value=0.14 Score=46.72 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 129
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.53 E-value=80 Score=44.48 Aligned_cols=18 Identities=33% Similarity=0.248 Sum_probs=10.8
Q ss_pred CCccchhHHhhchHHHHH
Q 000468 1372 CSFSNGEYVKAGLAELEQ 1389 (1473)
Q Consensus 1372 Cs~s~G~qIr~nls~Le~ 1389 (1473)
-+.|.|++-+..|..+-.
T Consensus 1088 ~~lS~g~~~~~~l~~~~~ 1105 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFA 1105 (1179)
T ss_pred cccCccHHHHHHHHHHHH
Confidence 345666666666666543
No 130
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.50 E-value=0.3 Score=55.49 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.7
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000468 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1473)
Q Consensus 145 ~~~~~QsIiisGESGAGKTes~k~im~yla~~~~ 178 (1473)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 4477889999999999999999999999987554
No 131
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.11 Score=60.80 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678899999999999999999999884
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.43 E-value=37 Score=43.15 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 921 QEIAKLQDALQAMQLQVEEANFRI 944 (1473)
Q Consensus 921 ~e~~~L~~~~eeLe~qlee~~~~l 944 (1473)
++..+++.++..++.+++++..++
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555555555554443
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.24 E-value=22 Score=37.53 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000468 991 SERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1473)
Q Consensus 991 ~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~ 1043 (1473)
.+..++.-+++++............+|+++..+...+...+..|+.+....+.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 34444444555544444444444444444444444444444444443333333
No 134
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.20 E-value=11 Score=46.38 Aligned_cols=13 Identities=8% Similarity=-0.143 Sum_probs=7.0
Q ss_pred HHHHHhcCCCHHH
Q 000468 1333 LKTMKVNYVPPFL 1345 (1473)
Q Consensus 1333 ~~~l~~~~v~~~l 1345 (1473)
...++.-++|+.+
T Consensus 505 ~asc~R~~~dek~ 517 (596)
T KOG4360|consen 505 RASCRRMISDEKL 517 (596)
T ss_pred HHHHHhhcCchhh
Confidence 3445556666643
No 135
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.00 E-value=61 Score=42.14 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000468 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1473)
Q Consensus 1012 ~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en 1045 (1473)
.+.++++..+.++..|......+++.+.+++...
T Consensus 369 ~i~e~k~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 369 SIQEKKENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666666666666666555554443
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.00 E-value=11 Score=39.21 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~ 1051 (1473)
..+..++.+...++.++..++...+.....+...+ ...+.+...|.+++..++..+.+|..+|.-|-++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e----------~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESE----------ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555444444444444333332222 2344555556666666666777777766666554
No 137
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.93 E-value=0.14 Score=51.88 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.6
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla 174 (1473)
|+|.|++|+|||..++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 138
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.91 E-value=0.25 Score=60.94 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 131 HVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.++...-.|...+..-++.|.+.|.|.||+|||+..+.|+++.
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 3445555666777667889999999999999999988877643
No 139
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.90 E-value=0.32 Score=50.53 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
..+..|+++|++|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999998877
No 140
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.75 E-value=4.4 Score=46.03 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000468 1015 KKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1473)
Q Consensus 1015 ~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~~~~ 1054 (1473)
..+.-++..+......++.|+.++..++.++++..+.+.+
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455566677777777778888888777777776665543
No 141
>PRK06696 uridine kinase; Validated
Probab=90.74 E-value=0.29 Score=55.35 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+|+..+.. ..+..--|.|+|.||||||+.|+.+.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555442 3556789999999999999999999998854
No 142
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.67 E-value=30 Score=38.01 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARK 1001 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~ 1001 (1473)
...+++|+.++.++..+.+.+..+..++-.
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 456667777777776666666666655433
No 143
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.65 E-value=45 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 000468 1020 TEEKVGQLQESMQRLEEKLCNSE 1042 (1473)
Q Consensus 1020 ~e~el~~L~~~~~~Leekl~ele 1042 (1473)
.+.+..+|.+.++.|+++-..|.
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~ 262 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQ 262 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777776554433
No 144
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.59 E-value=0.2 Score=55.83 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
++.--|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 145
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.50 E-value=0.17 Score=56.12 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56899999999999999999998875
No 146
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.50 E-value=86 Score=43.04 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=6.9
Q ss_pred ccchHHHHHHHh
Q 000468 567 DYVVAEHQVLLT 578 (1473)
Q Consensus 567 D~~~~~~~~ll~ 578 (1473)
|.++++++.-..
T Consensus 241 DYISPEvLqs~~ 252 (1317)
T KOG0612|consen 241 DYISPEVLQSQG 252 (1317)
T ss_pred CccCHHHHHhhc
Confidence 666666655443
No 147
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.47 E-value=0.17 Score=56.10 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~ 175 (1473)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988753
No 148
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.45 E-value=0.2 Score=49.97 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLM 170 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im 170 (1473)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999976
No 149
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.34 E-value=0.27 Score=58.58 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.8
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+.++..+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455555554 5999999999999999999998853
No 150
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.32 E-value=0.18 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998877
No 151
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.25 E-value=68 Score=41.49 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 872 RELRNLKMAARETGALKEAKDKLEKRVEELTWRLQF 907 (1473)
Q Consensus 872 kel~~Lk~~a~e~~~l~~~~~~LE~kv~eL~~~l~~ 907 (1473)
+++..+.........+.....+++..+-+++|....
T Consensus 141 k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~ 176 (716)
T KOG4593|consen 141 KELELLREKEDKLAELGTLRNKLDSSLSELQWEVML 176 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555556666666666665443
No 152
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.18 E-value=54 Score=40.23 Aligned_cols=10 Identities=30% Similarity=0.072 Sum_probs=5.9
Q ss_pred chhHHHHHHH
Q 000468 604 SIGSRFKLQL 613 (1473)
Q Consensus 604 tv~~~fk~~L 613 (1473)
++..-|+.|+
T Consensus 79 ~~s~~~i~q~ 88 (622)
T COG5185 79 SVSRLSINQL 88 (622)
T ss_pred hhhHHHHHhh
Confidence 4555666665
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.16 E-value=48 Score=39.55 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000468 922 EIAKLQDALQAMQLQVEEANFR 943 (1473)
Q Consensus 922 e~~~L~~~~eeLe~qlee~~~~ 943 (1473)
.+..|+.++++|...+.++.-.
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhch
Confidence 4555555555555555554433
No 154
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.07 E-value=0.22 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~y 172 (1473)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999877664
No 155
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.05 E-value=71 Score=41.37 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHH
Q 000468 1020 TEEKVGQLQESM---QRLEEKLCNSESENQVIRQQA 1052 (1473)
Q Consensus 1020 ~e~el~~L~~~~---~~Leekl~ele~en~~L~q~~ 1052 (1473)
+..++..|+..+ ..|+.....++.+|..+....
T Consensus 280 LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555544 344456677888887777653
No 156
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.00 E-value=32 Score=42.48 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 000468 1024 VGQLQESMQRLEEK 1037 (1473)
Q Consensus 1024 l~~L~~~~~~Leek 1037 (1473)
+..+..++..++.+
T Consensus 248 l~~~~~~l~~~~~~ 261 (423)
T TIGR01843 248 LTEAQARLAELRER 261 (423)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 157
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.95 E-value=0.32 Score=56.58 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=26.8
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444322 347999999999999999999998753
No 158
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.94 E-value=0.2 Score=54.46 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yl 173 (1473)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999998766
No 159
>PRK01156 chromosome segregation protein; Provisional
Probab=89.92 E-value=96 Score=42.68 Aligned_cols=32 Identities=6% Similarity=0.204 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000468 1018 EDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1473)
Q Consensus 1018 ~~~e~el~~L~~~~~~Leekl~ele~en~~L~ 1049 (1473)
+++..++..|.+....|+.++.+++.....++
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555544444
No 160
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=89.84 E-value=33 Score=41.48 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCC---Ccccccceeeeccchh-hHHHHHHHHHh--hhHHHHHHHHHHHHH
Q 000468 696 VACEKILDKMGLK---GYQIGKTKVFLRAGQM-AELDARRAEVL--GNAARIIQRQIRTYI 750 (1473)
Q Consensus 696 ~~~~~il~~~~~~---~~~iG~TkVFlr~~~~-~~LE~~R~~~l--~~aa~~IQk~~R~~~ 750 (1473)
++.+.|-..++-+ +.-+--+-=|+|+..- ..=+..|.+.+ ....+.|--.|..|+
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHGDDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccCCccceeHHHHHHHHH
Confidence 3455555555432 3455555556666431 11222233222 234455555555554
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.84 E-value=58 Score=40.02 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=11.3
Q ss_pred cchhHHHHHHHHHHHHHHccCC
Q 000468 603 SSIGSRFKLQLQSLMETLNSTE 624 (1473)
Q Consensus 603 ~tv~~~fk~~L~~Lm~~l~~t~ 624 (1473)
+|+-+.-+.+...|-..++-.+
T Consensus 75 ss~~~~s~~~i~q~~~~~s~~D 96 (622)
T COG5185 75 SSRNSVSRLSINQLQQHLSNRD 96 (622)
T ss_pred chhhhhhHHHHHhhhhhcccCC
Confidence 4555555566555544443333
No 162
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.82 E-value=0.39 Score=57.49 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=35.8
Q ss_pred HHHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 117 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
...|+-....++-.|-..+ +........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVV--ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHH--HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556555444443332222 2233334445545799999999999999999998875
No 163
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.78 E-value=0.2 Score=55.28 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~~ 177 (1473)
|-|+|.||||||+.|+.+-..|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 164
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.75 E-value=38 Score=37.86 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000468 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR 1009 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~ 1009 (1473)
.+..+..++.++..|+-+.+.+++++..++.+..++...
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666665555443
No 165
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.66 E-value=41 Score=40.07 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 883 ETGALKEAKDKLEKRVEELTWRLQFEK 909 (1473)
Q Consensus 883 e~~~l~~~~~~LE~kv~eL~~~l~~e~ 909 (1473)
-+...++.+..|..++.+|++++.+.+
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666777777777777765443
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.61 E-value=0.21 Score=50.21 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999988877653
No 167
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.61 E-value=38 Score=37.65 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000468 1023 KVGQLQESMQRLEEKLCN 1040 (1473)
Q Consensus 1023 el~~L~~~~~~Leekl~e 1040 (1473)
+...++.++..|.+++..
T Consensus 165 K~~~~~~~~~~l~~ei~~ 182 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQR 182 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 168
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.57 E-value=0.27 Score=54.88 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.+..-|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888999999999999998887664
No 169
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.56 E-value=0.46 Score=53.42 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
-.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334445444667889999999999999999999988753
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.38 E-value=41 Score=44.77 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=25.7
Q ss_pred CCCceEEEecccceeeehhhHhhh-----ccccchHHHHHHHhhCCchhHhhcCCC
Q 000468 541 SRTSFTISHYAGEVTYLADLFLDK-----NKDYVVAEHQVLLTASKCPFVSGLFPP 591 (1473)
Q Consensus 541 ~~~~F~I~Hyag~V~Y~~~gfleK-----N~D~~~~~~~~ll~~S~~~~v~~lf~~ 591 (1473)
.+..|-+.|-+|-=.=.. .|+.+ +.|.-..+.+..+...+.+.|..++..
T Consensus 377 ~~~ryy~~H~~GvH~V~L-~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT 431 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTL-PWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCT 431 (717)
T ss_pred CCceEEEEecCccEEEEe-ccHHHHHHHhcccCCccchhhhhcccCCcceEEEecc
Confidence 456899999999622222 36552 232222233333444444556666554
No 171
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.36 E-value=77 Score=40.78 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 1017 L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
|.....++.++.+........+..|+.+..+++.
T Consensus 318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 3333333333333333333334444444443333
No 172
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.30 E-value=0.37 Score=57.25 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=35.4
Q ss_pred HHHhhccCCCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 117 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~-~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.++|+-+...++- +|+-+ ....... .+.+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3566665555553 44422 3444333 3446778889999999999999998875
No 173
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.23 E-value=0.37 Score=51.42 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998764
No 174
>PRK08233 hypothetical protein; Provisional
Probab=89.13 E-value=0.22 Score=53.88 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.4
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla 174 (1473)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999988874
No 175
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=89.10 E-value=8 Score=49.25 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhh-hhhcCCCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHHHHHhcC
Q 000468 1262 FKQQLTAFLEKIYGMIRDNLKKDISPLLG-LCIQAPRTSRASLVKGRSQANAVAQQALIAHWQSIVKSLNSYLKTMKVNY 1340 (1473)
Q Consensus 1262 fkqqL~~~~~~iy~~l~~~~kk~l~p~L~-~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~ 1340 (1473)
|+.-.......|=..+++.++..+.|-.. ..= .+.+.. + .....+++..+...+..|...+..|+..
T Consensus 307 y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W----~~~~~~--~-----~~~~~~~S~el~~~L~~L~~~L~~L~~~- 374 (494)
T PF04437_consen 307 YEKLRKRMLESIVDRVVKEFKASLKAYFKRSQW----SSIESP--S-----DSSPLSPSPELVPALSLLRSRLSFLERS- 374 (494)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GG----GT--------------------GGGHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCC----CCcccc--c-----ccccCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 44444444555555666666666666654 111 000000 0 0011134456678889999999999998
Q ss_pred CCHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCccchhHHhhchHHHHHHHhhhccccccchHhhhHhHHHHHHhHhccc
Q 000468 1341 VPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQ 1420 (1473)
Q Consensus 1341 v~~~li~q~f~Qlf~~In~~~fN~LllRr~~Cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~QA~~lL~~~k 1420 (1473)
+++.....+.+++..-|+-.++++++++. -.|-.-|.|+.+=+. .|+.--+ .+....-..+..|.+|+.||-++.
T Consensus 375 L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~---~L~~~~~-~~~~~p~~~f~~l~E~~~LL~L~~ 449 (494)
T PF04437_consen 375 LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMR---ALFSVFS-QYTPRPEAFFKRLREACKLLNLPY 449 (494)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHH---HHHTTS---TTSGG-HHHHHHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHH---HHHHHHH-hhccCHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999976 333344566665554 4444333 344555579999999999999987
Q ss_pred CCcCCH--------------HHHHhccC-CCCCHHHHHHHHh
Q 000468 1421 KPKKTL--------------NEITKELC-PVLSIQQLYRIST 1447 (1473)
Q Consensus 1421 k~~~~~--------------~~i~~~~C-~~Ls~~Qi~kil~ 1447 (1473)
.+...+ .++..++. -.||+.++.+||.
T Consensus 450 ~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 450 GSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred cchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 654422 22222221 4799999998885
No 176
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.07 E-value=31 Score=35.86 Aligned_cols=65 Identities=26% Similarity=0.406 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ 1039 (1473)
+...+.++.++..++.........+...+..-..-+ ..+.+.+.+++.++..|...+.-|.+.+.
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk---~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWEEQK---EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555444444444333322221 23334455555555556555555555443
No 177
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.05 E-value=0.24 Score=52.94 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 178
>PTZ00301 uridine kinase; Provisional
Probab=88.96 E-value=0.27 Score=55.12 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla 174 (1473)
-|-|+|-||||||+.|+.|.+-|.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 377999999999999998887664
No 179
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.89 E-value=0.28 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 180
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.87 E-value=1.1e+02 Score=41.72 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000468 785 AAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVAR 823 (1473)
Q Consensus 785 ~AAi~IQ~~~R~~~~Rr~y~~~r~aai~IQs~~Rg~~aR 823 (1473)
.++..-|..|..|..-+.-.+.-..+-..++-.+....+
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~ 249 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKER 249 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhh
Confidence 455566666666654443333333333444444444333
No 181
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.84 E-value=83 Score=40.49 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=33.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000468 1004 MDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1473)
Q Consensus 1004 ~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~~ 1052 (1473)
..+..+++.....|.....+...|...+..|+.++...+.+...+++..
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566677777777788888888888877777777777653
No 182
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.71 E-value=0.28 Score=55.40 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~ 175 (1473)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999988753
No 183
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=88.69 E-value=0.7 Score=57.03 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
++...-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 34455556666666778999999999999999998888753
No 184
>PRK06547 hypothetical protein; Provisional
Probab=88.48 E-value=0.58 Score=50.82 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.9
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 145 NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 145 ~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
......-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999887764
No 185
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.47 E-value=32 Score=45.75 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=8.3
Q ss_pred CCCCCHHHHHHHHh
Q 000468 1434 CPVLSIQQLYRIST 1447 (1473)
Q Consensus 1434 C~~Ls~~Qi~kil~ 1447 (1473)
.+..++.||.+-|.
T Consensus 946 y~~~~~~el~kkL~ 959 (1200)
T KOG0964|consen 946 YQDKKSKELMKKLH 959 (1200)
T ss_pred hccCCHHHHHHHHH
Confidence 45666666666554
No 186
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.47 E-value=44 Score=40.90 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.4
Q ss_pred HhhcCCcccchHHHH
Q 000468 663 SCAGYPTRRTFYEFL 677 (1473)
Q Consensus 663 ~~~Gyp~r~~~~~F~ 677 (1473)
...|||.-+.|..|+
T Consensus 75 kdlgyrgD~gyqtfL 89 (521)
T KOG1937|consen 75 KDLGYRGDTGYQTFL 89 (521)
T ss_pred HHcCCCcccchhhee
Confidence 456788777776664
No 187
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.44 E-value=0.31 Score=53.20 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~ 175 (1473)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 188
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.42 E-value=0.31 Score=52.81 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+..-|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999998864
No 189
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.38 E-value=3 Score=46.26 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 1013 ~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
..+.+..+.+|+..|+-+...+++++..++.||..|-+
T Consensus 142 k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 142 KNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566666777777777777777777777766543
No 190
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.35 E-value=42 Score=38.23 Aligned_cols=28 Identities=14% Similarity=0.477 Sum_probs=17.7
Q ss_pred cchhHHHHHH----hhcCCcccchHHHHhhhc
Q 000468 654 GGVLEAIRIS----CAGYPTRRTFYEFLHRFG 681 (1473)
Q Consensus 654 ~gvle~iri~----~~Gyp~r~~~~~F~~ry~ 681 (1473)
+|..+.+++. +-.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 3444444443 345888888888886544
No 191
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.33 E-value=1.5e+02 Score=42.75 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=7.1
Q ss_pred HHHHHHHcCCCH
Q 000468 354 LNTTAELLKCDA 365 (1473)
Q Consensus 354 l~~~a~LLgv~~ 365 (1473)
-..+-+++|++.
T Consensus 172 k~~~d~if~~~~ 183 (1311)
T TIGR00606 172 KQKFDEIFSATR 183 (1311)
T ss_pred HHHHHHHhhhhH
Confidence 445566777654
No 192
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.32 E-value=59 Score=38.18 Aligned_cols=74 Identities=26% Similarity=0.369 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en 1045 (1473)
...+..|..+.+....++..+-++.+++.++..++.....+...+..++..++..++.++..++..+..+....
T Consensus 178 ~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~ 251 (294)
T COG1340 178 HEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKE 251 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444444445555566666666666666666655555543
No 193
>PRK07261 topology modulation protein; Provisional
Probab=88.30 E-value=0.33 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886554
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.29 E-value=0.37 Score=52.33 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla 174 (1473)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 195
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.19 E-value=0.27 Score=55.66 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.5
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000468 151 SILVSGESGAGKTETTKML 169 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~i 169 (1473)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987754
No 196
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.14 E-value=29 Score=42.79 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=5.7
Q ss_pred ceeeeccchh
Q 000468 715 TKVFLRAGQM 724 (1473)
Q Consensus 715 TkVFlr~~~~ 724 (1473)
++||.++|..
T Consensus 55 ~~i~V~eG~~ 64 (423)
T TIGR01843 55 REILVREGDR 64 (423)
T ss_pred EEEEeCCCCE
Confidence 3566666643
No 197
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.06 E-value=0.31 Score=53.47 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=22.9
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla 174 (1473)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999888763
No 198
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.00 E-value=50 Score=36.96 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 974 KIESLTAEVDSLKALLLSERQSAEEARK 1001 (1473)
Q Consensus 974 ~~~~L~~E~~~Lk~~l~~l~~~~~~l~~ 1001 (1473)
.+..|+-+.+.|...+..++...+++..
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333
No 199
>PRK06762 hypothetical protein; Provisional
Probab=87.90 E-value=0.43 Score=51.10 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...|+|+|-+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 200
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.89 E-value=1e+02 Score=40.41 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 983 DSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKL 1038 (1473)
Q Consensus 983 ~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl 1038 (1473)
.++|-+++++..+.+.+.-++...++++.-+.-.|+.-..|+.+|.+-...|+..+
T Consensus 497 ~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sm 552 (861)
T PF15254_consen 497 TRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSM 552 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333334444444444444444444433
No 201
>PF05729 NACHT: NACHT domain
Probab=87.82 E-value=0.41 Score=50.44 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998887643
No 202
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.79 E-value=41 Score=42.82 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHHHHH
Q 000468 971 DTEKIESLTAEVDSLKA 987 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~ 987 (1473)
...++.+++.++..+..
T Consensus 252 l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 252 LDGRIEALEKQLDALRL 268 (498)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555566666655544
No 203
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.67 E-value=0.67 Score=54.91 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
...|+|+|..|||||+.++.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 358999999999999999999998864
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=87.65 E-value=0.39 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla 174 (1473)
+-|+|.|.||||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999887753
No 205
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.64 E-value=1e+02 Score=41.26 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000468 976 ESLTAEVDSLKALLLSERQSAEEARKACMDAEV-------RNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1473)
Q Consensus 976 ~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~-------~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L 1048 (1473)
+.|+.|+..++.++.+.-+++.++...+.+... ....+.+++.++..+...|..+...|+..+..++.+...-
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433322 2233455566666677777777777777777666655443
Q ss_pred H
Q 000468 1049 R 1049 (1473)
Q Consensus 1049 ~ 1049 (1473)
.
T Consensus 494 ~ 494 (1200)
T KOG0964|consen 494 E 494 (1200)
T ss_pred H
Confidence 3
No 206
>PF12846 AAA_10: AAA-like domain
Probab=87.62 E-value=0.41 Score=55.86 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999888765
No 207
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.60 E-value=0.37 Score=47.97 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.6
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~ 176 (1473)
|.|.|+||.|||..++.+.+++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 208
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.57 E-value=5.9 Score=44.32 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~ 1051 (1473)
...+..|+.|++++++++.+..+..+....++ +.......+.+.+++++..+|.+++..++.++..++.++..++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l---~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEM---QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655554433222222 121222233334455555555555555555555555555555443
No 209
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.49 E-value=0.54 Score=57.03 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344677889999999999999999999998854
No 210
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.48 E-value=0.35 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999988764
No 211
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.46 E-value=0.44 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yl 173 (1473)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 212
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.44 E-value=48 Score=36.15 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000468 1016 KLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1473)
Q Consensus 1016 ~L~~~e~el~~L~~~~~~Leekl~el 1041 (1473)
......+++..++..+..++.++..+
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555544433
No 213
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.37 E-value=0.33 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=20.9
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+.|+|+|.||||||+..+.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999885543
No 214
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.32 E-value=5.7 Score=44.46 Aligned_cols=12 Identities=42% Similarity=0.440 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 000468 978 LTAEVDSLKALL 989 (1473)
Q Consensus 978 L~~E~~~Lk~~l 989 (1473)
|++++++|+.++
T Consensus 137 L~~~n~~L~~~l 148 (206)
T PRK10884 137 LKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 215
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.27 E-value=15 Score=40.35 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000468 1016 KLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1473)
Q Consensus 1016 ~L~~~e~el~~L~~~~~~Leekl~ele~ 1043 (1473)
.+........+++++...+.+.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555444433
No 216
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.24 E-value=0.33 Score=50.65 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 217
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.20 E-value=0.38 Score=58.15 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=23.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla 174 (1473)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999998874
No 218
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.16 E-value=0.48 Score=50.71 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 219
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.15 E-value=76 Score=38.14 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000468 1015 KKLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1473)
Q Consensus 1015 ~~L~~~e~el~~L~~~~~~Leekl~ele~en 1045 (1473)
+.+.+-+.++..|++....||.++.+++.--
T Consensus 252 e~I~~re~~lq~lEt~q~~leqeva~le~yy 282 (499)
T COG4372 252 EQIRERERQLQRLETAQARLEQEVAQLEAYY 282 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777766643
No 220
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.15 E-value=0.45 Score=57.30 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla 174 (1473)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45799999999999999999888764
No 221
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=87.10 E-value=0.38 Score=55.83 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.2
Q ss_pred eEEEecCCCCCCchhhHHHH
Q 000468 150 NSILVSGESGAGKTETTKML 169 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~i 169 (1473)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999987654
No 222
>PRK00889 adenylylsulfate kinase; Provisional
Probab=87.07 E-value=0.62 Score=50.40 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
+...|+|.|-+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 223
>PLN03025 replication factor C subunit; Provisional
Probab=87.01 E-value=0.71 Score=55.19 Aligned_cols=56 Identities=21% Similarity=0.426 Sum_probs=39.9
Q ss_pred HHHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 117 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.++|+-....++-.|-=.+ ...+.+...+.-..++++|++|+|||++++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566655555554443322 2355666667667899999999999999999998874
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.94 E-value=0.89 Score=51.92 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
|-.+.+.+.......++++.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455556655556679999999999999999988887764
No 225
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.88 E-value=0.95 Score=55.17 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=39.4
Q ss_pred HHHhhccCCCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 117 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~-~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.++|+-....++- +|+-.. .+.+.. .+-+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4667766666654 454433 444444 45689999999999999999999999885
No 226
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=86.87 E-value=0.33 Score=58.01 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=25.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
--++-+-||||||||.|+..||+-|.+-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 4578899999999999999999999863
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.85 E-value=0.5 Score=49.40 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.8
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~ 176 (1473)
++|+|+||+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998763
No 228
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.82 E-value=1.3e+02 Score=40.52 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000468 1020 TEEKVGQLQESMQRLEEKLCNSESEN 1045 (1473)
Q Consensus 1020 ~e~el~~L~~~~~~Leekl~ele~en 1045 (1473)
.+.++.+|+.+.+..++-...+....
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444433
No 229
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.66 E-value=0.41 Score=52.72 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887764
No 230
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.66 E-value=0.35 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla 174 (1473)
|++.|.||||||+.++.+-+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68899999999999999988873
No 231
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=86.63 E-value=1.8 Score=53.66 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
+|...-.|...+..-.+.|.+.|.|.||+|||+..+.|++..
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344445577788777899999999999999999999888764
No 232
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.52 E-value=0.62 Score=55.94 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.9
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 142 ~m~~~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.+++.+ ..|+|+|+.|||||+..+.++.++-
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 344444 4699999999999999999888773
No 233
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.47 E-value=1.1e+02 Score=39.35 Aligned_cols=55 Identities=31% Similarity=0.289 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 888 KEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANF 942 (1473)
Q Consensus 888 ~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~ 942 (1473)
++....|-.+|.+|.+.|...+......+.-..-|+..|+.++++.+.+++++..
T Consensus 579 r~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 579 RERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566666666665443333333333445666777777766666666543
No 234
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.45 E-value=90 Score=42.08 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000468 884 TGALKEAKDKLEKRVEELTW 903 (1473)
Q Consensus 884 ~~~l~~~~~~LE~kv~eL~~ 903 (1473)
+.+|.....++++.|+.+..
T Consensus 204 l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 204 LNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444443
No 235
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.31 E-value=43 Score=43.48 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000468 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1473)
Q Consensus 975 ~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L 1048 (1473)
...+.+++..+...+....+.+......+..+....+++.+++++++.+...+.+.+..|++.-.+.+.....+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333322223333333444445555555555555555555554444443333333
No 236
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=86.24 E-value=1 Score=53.03 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=24.9
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 146 EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 146 ~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+.+--|-|+|.||||||++++.+...|..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677889999999999999988777754
No 237
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.21 E-value=0.47 Score=57.55 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999864
No 238
>PRK12377 putative replication protein; Provisional
Probab=86.17 E-value=1.1 Score=51.62 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
-|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566666654444433 35799999999999999999999999853
No 239
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.16 E-value=66 Score=36.44 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000468 979 TAEVDSLKALLLSERQSAEEARK 1001 (1473)
Q Consensus 979 ~~E~~~Lk~~l~~l~~~~~~l~~ 1001 (1473)
.+..+.++.-+.+|++.++.++.
T Consensus 104 ~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 104 HAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHhccHHHH
Confidence 33334444444444454444443
No 240
>PRK14738 gmk guanylate kinase; Provisional
Probab=86.15 E-value=0.51 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999988888764
No 241
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.10 E-value=0.38 Score=52.10 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yl 173 (1473)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999998865
No 242
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.07 E-value=89 Score=44.93 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 873 ELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAAR 952 (1473)
Q Consensus 873 el~~Lk~~a~e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~~~ 952 (1473)
.+..|...-..+..++.....++.++..|..=+..-+.-.......+..+.-....+++++..+++.+...+....++..
T Consensus 221 ~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEER 300 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhCCCcccccccccccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000468 953 KAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLK--------ALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKV 1024 (1473)
Q Consensus 953 ~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk--------~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el 1024 (1473)
...++. .. .....+.++.+...|+ .++.+++++++...+..............++.+.+.++
T Consensus 301 ~~~~~~----~~------le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~ 370 (1353)
T TIGR02680 301 ELDART----EA------LEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRL 370 (1353)
T ss_pred HHHHHH----HH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 000468 1025 GQLQESMQRLEEKLCNSESENQVI 1048 (1473)
Q Consensus 1025 ~~L~~~~~~Leekl~ele~en~~L 1048 (1473)
.++.......+..+.+...+....
T Consensus 371 ~~~~~r~~~~~~~l~~~~~el~~~ 394 (1353)
T TIGR02680 371 DEEAGRLDDAERELRAAREQLARA 394 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 243
>PRK09099 type III secretion system ATPase; Provisional
Probab=85.93 E-value=1.5 Score=54.44 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345556566789999999999999999988776543
No 244
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.90 E-value=0.84 Score=54.10 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=36.3
Q ss_pred HHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 118 EQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 118 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
+.|+-....++..|-- +-...+.....+..-.++++|++|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~--~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEE--IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3454444444444432 223455555555555699999999999999999988774
No 245
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.86 E-value=0.48 Score=54.45 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~~~ 178 (1473)
.+..++-+-||||+|||++.|.+++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 46678999999999999999999987754443
No 246
>PF13245 AAA_19: Part of AAA domain
Probab=85.86 E-value=0.88 Score=42.57 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567788999999999888888888874
No 247
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.84 E-value=1.3 Score=58.37 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
+-.|+..-...+...+.+.++.|+|..|.|||.+++++++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445554333334344555667899999999999999999988643
No 248
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=85.83 E-value=2.7 Score=50.05 Aligned_cols=131 Identities=12% Similarity=0.157 Sum_probs=71.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCccch--hHHhhchHHHHHHHhhh
Q 000468 1317 ALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNG--EYVKAGLAELEQWCYDA 1394 (1473)
Q Consensus 1317 ~~~~~~~~il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~~In~~~fN~LllRr~~Cs~s~G--~qIr~nls~Le~W~~~~ 1394 (1473)
.+...+.+++.+|.+.++.. -..+|+.+.+-++...|.+|+..+++-|+ -.+...++.| .++...+..||.++.+.
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll-~~~vk~in~~al~~~~~Dv~~lE~f~~~~ 253 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLL-SDDVKRINMNALQNFDLDVKYLESFADSL 253 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT----------TTHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 35568999999999988543 45799999999999999999999998864 6677777766 57778889999999986
Q ss_pred cc--ccccchHhhhHhHHHHHHhHhcccCCcCCHHHHHhccCCCCCHHHHHHHHhcC
Q 000468 1395 TE--EYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMY 1449 (1473)
Q Consensus 1395 ~~--~~~~~a~~~L~~l~QA~~lL~~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y 1449 (1473)
.. ...+...++|..|+|-+.||....-..---..++.---+.++|..+..||..|
T Consensus 254 ~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~ 310 (311)
T PF04091_consen 254 PVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKL 310 (311)
T ss_dssp SSSS--SSTTGGGGHHHHHHHHHHH--------------------------------
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhc
Confidence 10 23567789999999999999965322210012443445677777777777655
No 249
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=85.75 E-value=0.56 Score=49.59 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~ 175 (1473)
|+|.|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 250
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.58 E-value=0.83 Score=56.06 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=28.2
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 143 m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
......+.+++|+|.+|+|||.+++.+++.+..
T Consensus 49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344567789999999999999999999998854
No 251
>PRK06315 type III secretion system ATPase; Provisional
Probab=85.54 E-value=0.75 Score=57.02 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.-.|...+..-++.|.+.|.|+||+|||+..+.++++.
T Consensus 151 Gi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 151 GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred eEEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 33444455566789999999999999999999998766
No 252
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.53 E-value=0.91 Score=56.68 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=38.6
Q ss_pred HHhhccCCCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
++|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.+.|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45665555444 4566543 44444444 4789999999999999999999998864
No 253
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.38 E-value=94 Score=40.23 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=12.3
Q ss_pred CCCCCccchhHHhhchHHHHHHHhhhc
Q 000468 1369 RECCSFSNGEYVKAGLAELEQWCYDAT 1395 (1473)
Q Consensus 1369 r~~Cs~s~G~qIr~nls~Le~W~~~~~ 1395 (1473)
+|..-|||- ++-.|+.+-|
T Consensus 756 ~DvlVWsN~--------RvirWV~~ig 774 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIG 774 (916)
T ss_pred ccceEeecH--------HHHHHHHhcC
Confidence 455678875 4456877765
No 254
>PRK06217 hypothetical protein; Validated
Probab=85.37 E-value=0.52 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
-|+|+|-||||||+.++.+.+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999988776
No 255
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.33 E-value=0.56 Score=57.09 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999975
No 256
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=85.28 E-value=0.61 Score=50.64 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=24.0
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
--|.|+|.||||||+..+.++..|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 368899999999999999999999753
No 257
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.19 E-value=65 Score=35.48 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000468 884 TGALKEAKDKLEKRVEELTWRLQ 906 (1473)
Q Consensus 884 ~~~l~~~~~~LE~kv~eL~~~l~ 906 (1473)
...+++....+..++.++++.-+
T Consensus 20 le~aqErl~~a~~KL~Eaeq~~d 42 (205)
T KOG1003|consen 20 LDRAQERLATALQKLEEAEQAAD 42 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 33344444444445555554433
No 258
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.19 E-value=0.91 Score=58.08 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=25.9
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 144 INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 144 ~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.....++.|+|.||+|+|||..|+++.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445678999999999999999999987764
No 259
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.16 E-value=1.4 Score=49.88 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999887754
No 260
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.11 E-value=40 Score=37.01 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~ 1002 (1473)
..+++.+..++...+.--.+...++++...+
T Consensus 59 EE~~e~~e~qLkEAk~iaE~adrK~eEVark 89 (205)
T KOG1003|consen 59 EEKMEAQEAQLKEAKHIAEKADRKYEEVARK 89 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333344443333
No 261
>PRK03846 adenylylsulfate kinase; Provisional
Probab=85.05 E-value=1.1 Score=49.81 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.7
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 145 ~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
...+...|+|.|.||||||+.++.+.+.|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34577899999999999999999999988654
No 262
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.04 E-value=0.53 Score=54.74 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4689999999999999999999887754
No 263
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.99 E-value=95 Score=37.22 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 000468 823 RNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQC-GWRRRVARRELRNLKMA------ARETGALKEAKDKLE 895 (1473)
Q Consensus 823 Rr~~~~lk~~~AAv~IQa~~R~~~~r~~y~~~~ka~i~iQ~-~~R~~~arkel~~Lk~~------a~e~~~l~~~~~~LE 895 (1473)
+++...++..--|-..|-..-....|..-......-...|. +-|+..+-.+-..-+++ .+++..|++.++.|-
T Consensus 297 ~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLL 376 (593)
T KOG4807|consen 297 EKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLL 376 (593)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc--------cc
Q 000468 896 KRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKET--------PV 967 (1473)
Q Consensus 896 ~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~~~~~~ee~~~~~~e~--------~~ 967 (1473)
.+ +....+..-+.++....++...|.++-+ .++..++.+..+...+.+..+.+++-+..+-..+ +.
T Consensus 377 AE--ETAATiSAIEAMKnAhrEEmeRELeKsq----SvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqa 450 (593)
T KOG4807|consen 377 AE--ETAATISAIEAMKNAHREEMERELEKSQ----SVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQA 450 (593)
T ss_pred hh--hhhhhhHHHHHHHHHHHHHHHHHHHhhh----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 968 IVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDA--------------EVRNTELVKKLEDTEEKVGQLQESMQR 1033 (1473)
Q Consensus 968 l~~~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~--------------~~~~~~~~~~L~~~e~el~~L~~~~~~ 1033 (1473)
++.....+..-+.|+++|.+.-.++..++.+....+..+ .+..=++.--|+--+.++.-|.+++..
T Consensus 451 lEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEiss 530 (593)
T KOG4807|consen 451 LEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISS 530 (593)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHH
Q 000468 1034 LEEKLCNSESE 1044 (1473)
Q Consensus 1034 Leekl~ele~e 1044 (1473)
|.++++.....
T Consensus 531 LkDELQtalrD 541 (593)
T KOG4807|consen 531 LKDELQTALRD 541 (593)
T ss_pred HHHHHHHHHhh
No 264
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.85 E-value=2.8 Score=52.18 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
+.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 45566777778777899999999999999999988777654
No 265
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.81 E-value=0.6 Score=48.99 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
+|+|.|.+|||||+.+|.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998877
No 266
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.81 E-value=56 Score=34.42 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 000468 892 DKLEKRVEELTWRLQ 906 (1473)
Q Consensus 892 ~~LE~kv~eL~~~l~ 906 (1473)
..|+.++..|...|+
T Consensus 20 dsle~~v~~LEreLe 34 (140)
T PF10473_consen 20 DSLEDHVESLERELE 34 (140)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444444444433
No 267
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.77 E-value=0.5 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla 174 (1473)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999998886654
No 268
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.73 E-value=1 Score=56.98 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=38.8
Q ss_pred HHhhccCCCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 118 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
++|+-..+.++. +|+...-..| +...+-.++++++|+.|.|||++++++.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456555555543 4444422222 3345668999999999999999999999988653
No 269
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=84.48 E-value=0.51 Score=59.31 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
...+..-|-||||||||+++..+|.++-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356888999999999999999999999754
No 270
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.47 E-value=0.66 Score=51.91 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla 174 (1473)
-|-|+|-||||||+-|+.+..-|-
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999988775
No 271
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.42 E-value=0.46 Score=53.84 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
--+++-|+||||||++.|+|-+-+.-.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 356788999999999999998866543
No 272
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.35 E-value=97 Score=36.81 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAE 1007 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~ 1007 (1473)
+..+..++..+..+..++..++.+...++..+..++
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 334444444444444455555555555555554443
No 273
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=84.27 E-value=0.75 Score=48.89 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla 174 (1473)
|.|||.+|||||+-++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999998875
No 274
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.18 E-value=1.1 Score=56.41 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=39.6
Q ss_pred HHhhccCCCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
++|+-..+.++ .+|+-..-..|+ ..++-+|+++++|.+|.|||++++++-+.|-...
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 46665555554 355544333332 3456689999999999999999999998885543
No 275
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=84.04 E-value=1.7 Score=53.87 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=42.9
Q ss_pred CCCHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcC-----------CCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 111 LYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 111 lY~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~-----------~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
+.++..+..|-+...-..++=+=+++..+|..+.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678888887765544444545556655555433321 24789999999999999999886554
No 276
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=84.03 E-value=0.79 Score=48.07 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
.|.|.|-||||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998654
No 277
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.03 E-value=15 Score=44.63 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000468 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESM 1031 (1473)
Q Consensus 977 ~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~ 1031 (1473)
-++.+++.+-.++...+.++.+.++++..+.....++...|.++.+++.+.+.++
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444433
No 278
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=83.97 E-value=0.73 Score=50.36 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
-|+|.|.||||||+-||.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999884
No 279
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.96 E-value=1.7e+02 Score=39.29 Aligned_cols=80 Identities=25% Similarity=0.213 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHHHHHH---HHHHHHH--HHHHhhHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLED--TEEKVGQLQ---ESMQRLE--EKLCNSESEN 1045 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~--~e~el~~L~---~~~~~Le--ekl~ele~en 1045 (1473)
..+.+|..+......++..+..+++..+++...++-+...+.++|+- .|.+...=- ...+.|| ++|..|+.|.
T Consensus 120 ~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC 199 (769)
T PF05911_consen 120 KLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAEC 199 (769)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655554443333333322 222222110 1223344 2777788888
Q ss_pred HHHHHHH
Q 000468 1046 QVIRQQA 1052 (1473)
Q Consensus 1046 ~~L~q~~ 1052 (1473)
++|+-=.
T Consensus 200 ~rLr~l~ 206 (769)
T PF05911_consen 200 QRLRALV 206 (769)
T ss_pred HHHHHHH
Confidence 7776543
No 280
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.50 E-value=1e+02 Score=36.35 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000468 1018 EDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1473)
Q Consensus 1018 ~~~e~el~~L~~~~~~Leekl~ele~en~~L 1048 (1473)
..+-.++..+....+.+++++.++..+...+
T Consensus 210 de~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555444444333
No 281
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=83.45 E-value=0.7 Score=48.49 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999887754
No 282
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=83.38 E-value=0.98 Score=56.05 Aligned_cols=42 Identities=14% Similarity=0.327 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 131 HVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
.++...-.|...|..-++.|.+.|.|.||+|||+..+.+.++
T Consensus 150 ~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 150 EPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CCcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 355566677777777789999999999999999998877654
No 283
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.27 E-value=1.4e+02 Score=39.35 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 883 ETGALKEAKDKLEKRVEELTWRLQF 907 (1473)
Q Consensus 883 e~~~l~~~~~~LE~kv~eL~~~l~~ 907 (1473)
|+..||..+..|++++.|....++.
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~ 452 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQEL 452 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556788888888887776665553
No 284
>PHA00729 NTP-binding motif containing protein
Probab=83.18 E-value=1.5 Score=49.55 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
...-..+. ++.-.+|+|+|.+|+|||+.|..+.+.+.
T Consensus 6 k~~~~~l~-~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYN-NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33333443 33446999999999999999999998764
No 285
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.11 E-value=1.3e+02 Score=37.18 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~ 1006 (1473)
..+++|+.++..+-.++.+-+.-...+..++..+
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 4445555555544444433333333444444433
No 286
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=83.11 E-value=13 Score=33.32 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000468 998 EARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1473)
Q Consensus 998 ~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele 1042 (1473)
.+.+++..+...+.....+|.+.+.+...|..++..|++++.++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555556667777888888888888888877776654
No 287
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.09 E-value=0.85 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~ 175 (1473)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998864
No 288
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=83.09 E-value=0.66 Score=53.78 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=19.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~y 172 (1473)
-.-|+|+|+||+||||+|==+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999997655543
No 289
>PRK13764 ATPase; Provisional
Probab=83.07 E-value=0.91 Score=58.34 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999864
No 290
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=83.07 E-value=0.84 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 291
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.05 E-value=1.3 Score=55.06 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.|+... ....+.+...+...+|++.|++|+|||+.++.+-+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 454443 3556777777888899999999999999999887654
No 292
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.04 E-value=2e+02 Score=39.41 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=9.5
Q ss_pred HhhhccchhHHHHHHhhcC
Q 000468 649 QQLRCGGVLEAIRISCAGY 667 (1473)
Q Consensus 649 ~QLr~~gvle~iri~~~Gy 667 (1473)
.+|+.+.|+-+..+.+..|
T Consensus 1291 ~~ik~sdi~GA~~~~r~a~ 1309 (1758)
T KOG0994|consen 1291 EKIKESDILGAFNSTRHAY 1309 (1758)
T ss_pred HHhhccCchhHHHHHHHHH
Confidence 3445555555555554443
No 293
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.98 E-value=1 Score=56.91 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34445432 334789999999999999998888774
No 294
>PRK11281 hypothetical protein; Provisional
Probab=82.93 E-value=75 Score=44.35 Aligned_cols=175 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 000468 867 RRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEI---------AKLQDALQAMQLQV 937 (1473)
Q Consensus 867 ~~~arkel~~Lk~~a~e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~---------~~L~~~~eeLe~ql 937 (1473)
.+.....++..-.--.++...++..+.+++++.+..+++....+...++.+...... .+|++.+.+++.++
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 000468 938 EEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLT---------------AEVDSLKALLLSERQSAEEARKA 1002 (1473)
Q Consensus 938 ee~~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~---------------~E~~~Lk~~l~~l~~~~~~l~~~ 1002 (1473)
++++..+.....++....... ......+.+.....++++ .....+++++..++.+++..+.+
T Consensus 138 q~~Q~~La~~NsqLi~~qT~P---ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~ 214 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQP---ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKS 214 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcch---HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000468 1003 CMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 1044 (1473)
Q Consensus 1003 ~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~e 1044 (1473)
+.......+-...+.+....++.+++..++.|++.+.+...+
T Consensus 215 l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 215 LEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 295
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.92 E-value=64 Score=34.02 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000468 922 EIAKLQDALQAMQLQVEEA 940 (1473)
Q Consensus 922 e~~~L~~~~eeLe~qlee~ 940 (1473)
+...++..+..|+.+++..
T Consensus 18 e~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMS 36 (140)
T ss_pred hHhhHHHHHHHHHHHHHHH
Confidence 3444555555665555443
No 296
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=82.86 E-value=0.92 Score=49.44 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla 174 (1473)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 297
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=82.84 E-value=0.91 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yl 173 (1473)
++.|+|.|.+|||||+.++.+.+.|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988765
No 298
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.83 E-value=0.94 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~ 175 (1473)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988888754
No 299
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.77 E-value=90 Score=41.30 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000468 974 KIESLTAEVDSLKALLLS 991 (1473)
Q Consensus 974 ~~~~L~~E~~~Lk~~l~~ 991 (1473)
...+|++|+-.|+.++..
T Consensus 98 dyselEeENislQKqvs~ 115 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSV 115 (717)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 300
>PRK04182 cytidylate kinase; Provisional
Probab=82.76 E-value=0.78 Score=49.40 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999887654
No 301
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=82.70 E-value=1 Score=55.76 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 142 AMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 142 ~m~~~~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
.+..-++.|.+.|.|.||+|||+..+.+.++
T Consensus 158 ~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 158 IFTPLCAGQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred eeceecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3333567899999999999999998766543
No 302
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.64 E-value=0.89 Score=51.44 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+..+.=|.||||+|||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46789999999999999999998877654
No 303
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.63 E-value=1.6 Score=56.84 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 141 ~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
..+.....+++|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344455678999999999999999999998876443
No 304
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.61 E-value=0.75 Score=55.17 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
++.|++=|-||||||||+....+++-+.+.
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999999887654
No 305
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.59 E-value=1.1 Score=58.03 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=38.2
Q ss_pred HHhhccCCCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 118 EQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 118 ~~y~~~~~~~~~--PHifavA~~Ay~~m~-~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
++|+-..+.++- +|+-. ...++. ..+-.|++|++|.+|.|||++++++.+.|-..
T Consensus 16 ~KyRP~~f~dliGq~~~v~----~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVR----TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456655554443 33332 233333 45568999999999999999999999998653
No 306
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.42 E-value=13 Score=44.56 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHH
Q 000468 1321 HWQSIVKSLNSYL 1333 (1473)
Q Consensus 1321 ~~~~il~~L~~~~ 1333 (1473)
.|..-+++|=+-+
T Consensus 289 ~WT~AlK~lLtnl 301 (314)
T PF04111_consen 289 EWTKALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6776666554433
No 307
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=82.42 E-value=3.7 Score=35.67 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=41.0
Q ss_pred ccccCcEEEEeCCCCCeEEEEEEEEcC-CeEEEEeCC-CcEEEEeCCCccCCC
Q 000468 6 NIIVGSHVWVEHPELAWVDGEVFKISA-EEVHVHTTN-GQTVITNISKVFPKD 56 (1473)
Q Consensus 6 ~~~~g~~vwv~~~~~~w~~~~v~~~~~-~~~~v~~~~-g~~~~~~~~~~~~~~ 56 (1473)
.+.+|+.|=++..+..|..|+|+++.+ +.+.|...| |....++.+++.+..
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899888887677899999999987 778888766 888888877766543
No 308
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=82.36 E-value=1.2 Score=48.09 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999888654
No 309
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.32 E-value=1.7 Score=55.57 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=39.3
Q ss_pred HHHhhccCCCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 117 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~-~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.++|+-..+.++- +|+... ...+.. .+-.+++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3566665555553 555543 333333 456788999999999999999999999864
No 310
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.28 E-value=1.5e+02 Score=37.41 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 1012 ~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
++.+.|+....+...+....+.+.+++.++..+...++.
T Consensus 421 d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKn 459 (654)
T KOG4809|consen 421 DQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKN 459 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444333333334444455555555555555555543
No 311
>PRK14974 cell division protein FtsY; Provisional
Probab=82.09 E-value=2.1 Score=51.41 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987644
No 312
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.05 E-value=1e+02 Score=35.50 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMD 1005 (1473)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~ 1005 (1473)
..+.-|+.++...+.+++.|++.+...+.++..
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655555443
No 313
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.04 E-value=1.8 Score=53.47 Aligned_cols=56 Identities=14% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHhhccCCCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 118 EQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 118 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
+.|+-..+.+.--|-.++ ..++++... +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 355555555554444333 246666655 56789999999999999999999988854
No 314
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.93 E-value=0.95 Score=46.85 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
.|++.|++|+|||+.++.+.+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999888777
No 315
>PRK04040 adenylate kinase; Provisional
Probab=81.91 E-value=0.94 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla 174 (1473)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998883
No 316
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.91 E-value=37 Score=39.87 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 976 ESLTAEVDSLKALLLSERQSAEEARKA 1002 (1473)
Q Consensus 976 ~~L~~E~~~Lk~~l~~l~~~~~~l~~~ 1002 (1473)
..++.+++.++.++...++++.+++.+
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444333333333333333
No 317
>PLN03188 kinesin-12 family protein; Provisional
Probab=81.87 E-value=2.2e+02 Score=39.73 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhH
Q 000468 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETT 166 (1473)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~ 166 (1473)
-.||..+..-.-.-.-.|-|=||+..|.+|||||.|.
T Consensus 147 edVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 147 EDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 3566655443333334788999999999999999985
No 318
>PRK07667 uridine kinase; Provisional
Probab=81.82 E-value=1.7 Score=48.04 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.1
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999864
No 319
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.77 E-value=11 Score=41.46 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000468 985 LKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1473)
Q Consensus 985 Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~ 1043 (1473)
++..++++.+...++.+++.+++.+.++.+.+|+.++.++.+|.+..+.|..++..|+.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444444433333
No 320
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=81.70 E-value=1.1 Score=49.83 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=30.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcch-----HHhhccCc
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGNA 204 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snp-----iLEAFGNA 204 (1473)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999988866443 211 1112345555665443 67777763
No 321
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=81.68 E-value=1.8 Score=55.58 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=41.0
Q ss_pred HHHHhhccCCCCCCchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 116 MMEQYKGAQFGELSPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 116 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~-~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
..++|+-....++--|--.+ ..+..+. ..+-.++++++|+.|.|||+.|+.+-+.|-..
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567666655554333222 3444444 45678999999999999999999999998654
No 322
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=81.66 E-value=0.99 Score=53.92 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987753
No 323
>PRK08727 hypothetical protein; Validated
Probab=81.58 E-value=2 Score=49.05 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=26.0
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 146 ~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
....+.|+++|+||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3456789999999999999999988887654
No 324
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.52 E-value=1.3 Score=56.25 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=41.9
Q ss_pred HHHHhhccCCCCCCchHHHHHHH--HHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 116 MMEQYKGAQFGELSPHVFAIADV--AYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 116 ~~~~y~~~~~~~~~PHifavA~~--Ay~~m~~~~-~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+++|+-....++.-|-=.|.+- ....|.... ..+-+|++|.+|+|||++.+.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 56778777778888887655542 344444333 35677889999999999999988776
No 325
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.50 E-value=1e+02 Score=35.07 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 971 DTEKIESLTAEVDSLKALL-----LSERQSAEEARKACMDAEVR-------NTELVKKLEDTEEKVGQLQESMQRLEEKL 1038 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l-----~~l~~~~~~l~~~~~~~~~~-------~~~~~~~L~~~e~el~~L~~~~~~Leekl 1038 (1473)
...+...|..|++++-.+. .+|+.++.-.+....+++.. .+++.+.++..+..+--|+++++..+++|
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 4677778888888775543 33333333222222333222 23344444445555555666666666666
Q ss_pred HhhHHHHHHHHHH
Q 000468 1039 CNSESENQVIRQQ 1051 (1473)
Q Consensus 1039 ~ele~en~~L~q~ 1051 (1473)
..++..+..+.+.
T Consensus 295 q~l~k~~~q~sqa 307 (330)
T KOG2991|consen 295 QRLKKGLEQVSQA 307 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555443
No 326
>PRK06893 DNA replication initiation factor; Validated
Probab=81.41 E-value=2.1 Score=48.62 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
+..+.+.+. ...+-++++.|+||+|||..+..+-+.+...
T Consensus 27 ~~~~~~~~~-~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 27 LDSLRKNFI-DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHHhh-ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 333344443 4566789999999999999999999887654
No 327
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.38 E-value=5.7 Score=44.36 Aligned_cols=62 Identities=27% Similarity=0.298 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1473)
Q Consensus 978 L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ 1039 (1473)
|++|+..+++++..++++.++..+++..++....++.++.++...|.++|.++...|++++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555555555555555556666667777777777777777776654
No 328
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=81.37 E-value=0.99 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~ 171 (1473)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877765
No 329
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.26 E-value=1.1e+02 Score=41.23 Aligned_cols=14 Identities=29% Similarity=0.062 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 000468 833 KAAIIIEAYLRRHT 846 (1473)
Q Consensus 833 ~AAv~IQa~~R~~~ 846 (1473)
.||.+..+....|.
T Consensus 168 ~Aa~iaN~la~~Y~ 181 (754)
T TIGR01005 168 LAAAIPDAIAAAYI 181 (754)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=81.12 E-value=1.3 Score=51.97 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 132 VFAIADVAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~--------~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
++....++...++.. .+...|+|.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555666665531 245689999999999999999999999865
No 331
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=81.10 E-value=1 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+.+.+.|-|+||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887655
No 332
>PRK14527 adenylate kinase; Provisional
Probab=80.99 E-value=1.3 Score=48.77 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.+..-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999887664
No 333
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.95 E-value=1.6 Score=54.99 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
||++-++-. .--+.||.|||.||.|||||+ .+-+||-.-|
T Consensus 357 vf~~R~~ll---~~ir~n~vvvivgETGSGKTT---Ql~QyL~edG 396 (1042)
T KOG0924|consen 357 VFACRDQLL---SVIRENQVVVIVGETGSGKTT---QLAQYLYEDG 396 (1042)
T ss_pred hHHHHHHHH---HHHhhCcEEEEEecCCCCchh---hhHHHHHhcc
Confidence 555544432 234689999999999999998 5778887654
No 334
>PRK15453 phosphoribulokinase; Provisional
Probab=80.94 E-value=1.2 Score=52.02 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
+.=-|.|+|-||||||+.++.+-+-|.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445799999999999999987765553
No 335
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.94 E-value=1.7 Score=55.50 Aligned_cols=55 Identities=24% Similarity=0.450 Sum_probs=38.8
Q ss_pred HHHhhccCCCCC--CchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 117 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~-~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.++|+-..+.++ .+|+-.. ...+.. .+-.+++|++|++|.|||+.++.+.+.|-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 355665555554 3555543 333333 456789999999999999999999998854
No 336
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.91 E-value=1.5 Score=39.41 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=17.4
Q ss_pred EEEecCCCCCCchhhHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~ 171 (1473)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999998765543
No 337
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.89 E-value=49 Score=40.56 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhHHHH
Q 000468 1030 SMQRLEEKLCNSESEN 1045 (1473)
Q Consensus 1030 ~~~~Leekl~ele~en 1045 (1473)
.+...++++.+|+++.
T Consensus 429 ~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555444
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=80.88 E-value=2.6 Score=49.24 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHh---------cCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 131 HVFAIADVAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 131 HifavA~~Ay~~m~~---------~~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
.+..+..++++.++. .++.+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 456666677766542 23468999999999999999998888887654
No 339
>PRK06761 hypothetical protein; Provisional
Probab=80.88 E-value=0.99 Score=52.84 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 340
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.78 E-value=1.1 Score=50.49 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998876543
No 341
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=80.78 E-value=1.2 Score=45.76 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999999877
No 342
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=80.73 E-value=1.3 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~~ 177 (1473)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997643
No 343
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=80.70 E-value=1.1 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999887755
No 344
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=80.69 E-value=1.1 Score=50.00 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887644
No 345
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=80.68 E-value=2.1 Score=46.26 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
+|...+...| ...+.-.|-++|-||||||+.+..+-+.|-..|
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 4444443333 344678999999999999999999999998765
No 346
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=80.66 E-value=1.3 Score=51.46 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
+..-.|++.|++|+|||..++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3557899999999999999999999886554
No 347
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.62 E-value=2 Score=52.11 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.5
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 136 ADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 136 A~~Ay~~m~~~-~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 45556665554 45899999999999999999999998865
No 348
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=80.58 E-value=2.8 Score=52.24 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
|...-.+...+..-++.|.+.|.|.||+|||+..+.|+++
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4444556666666778999999999999999998877765
No 349
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=80.55 E-value=1.1 Score=50.07 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999888876644
No 350
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=80.50 E-value=1.1 Score=48.95 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~y 172 (1473)
+--=+.+.|.||||||+..|+|+.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3446789999999999999998763
No 351
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=80.48 E-value=1 Score=52.91 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.2
Q ss_pred CeEEEecCCCCCCchhhHHHH
Q 000468 149 SNSILVSGESGAGKTETTKML 169 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~i 169 (1473)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999987
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.46 E-value=1.5 Score=52.36 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999998644
No 353
>PRK04195 replication factor C large subunit; Provisional
Probab=80.37 E-value=1.6 Score=55.41 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 347899999999999999999887765
No 354
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.36 E-value=1.3 Score=48.11 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
+++|+|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888877776543
No 355
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=80.36 E-value=1.2 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.|+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999988877643
No 356
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.35 E-value=17 Score=40.26 Aligned_cols=66 Identities=24% Similarity=0.258 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEK 1037 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leek 1037 (1473)
...+.+|+.++..|+..+..++..+.+..+.+..+..+...+.-.+..+++++..|+.++..|=+.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554444444444444344444444555555555555444443
No 357
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=80.29 E-value=2.6 Score=52.37 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 34556667677889999999999999999988887644
No 358
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.28 E-value=0.7 Score=59.14 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
++.+.|.|.|+||||||+..|.+++++.--+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5789999999999999999999998875433
No 359
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.23 E-value=1.6 Score=44.35 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=23.5
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~ 176 (1473)
|+++|.+|+|||..+..+.++|+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999999874
No 360
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=80.23 E-value=2.3 Score=48.06 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCC--CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 135 IADVAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 135 vA~~Ay~~m~~~~~--~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
.|-.|-..+..... -..++|.|+||+|||.....+.+++...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34445555555432 3679999999999999988888887654
No 361
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=80.20 E-value=1.2 Score=49.55 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998887654
No 362
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.19 E-value=0.93 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999888776
No 363
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.18 E-value=1.7 Score=55.11 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=37.0
Q ss_pred HHhhccCCCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
++|+-..+.++ ..|+.+.-..++ ...+-.++++++|++|+|||+.++.+.+.|-.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i---~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAAL---RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34554444443 345544333332 23456789999999999999999999998864
No 364
>PRK08356 hypothetical protein; Provisional
Probab=80.13 E-value=1 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEecCCCCCCchhhHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~ 171 (1473)
--|+|+|.+|||||+.++++-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998854
No 365
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=80.08 E-value=1.1 Score=50.68 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999998776
No 366
>PRK08116 hypothetical protein; Validated
Probab=80.03 E-value=2.7 Score=49.09 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 130 PHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 130 PHifavA~~Ay~~m~~~-~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
.+.|+.|..--...... ..+..+++.|++|+|||..+..|.++|...
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44566555544444322 345679999999999999999999999764
No 367
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.02 E-value=1.9 Score=55.57 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=40.1
Q ss_pred HHHhhccCCCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 117 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.++|+-..+.++ .+|+-+ -++.+...+ -.+++|++|+.|.|||++++.+-++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~----~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKA----ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456766655554 466643 344444444 4899999999999999999999999854
No 368
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.01 E-value=1.3e+02 Score=35.12 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 883 ETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEA 950 (1473)
Q Consensus 883 e~~~l~~~~~~LE~kv~eL~~~l~~e~~~r~~lee~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~ 950 (1473)
++.++++....++++++.|...++.-.... .....++.+++.++.+++.++++++.++.+..+-
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~----~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKI----DELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555544443222111 1234467778888888888888888777655443
No 369
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=80.00 E-value=1.2 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999988655
No 370
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=79.92 E-value=1.2 Score=49.88 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999887654
No 371
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.91 E-value=1.2 Score=50.86 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
=.|+|-|-||||||...+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 36899999999999999999998764
No 372
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=79.91 E-value=1.1 Score=53.82 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+.+.+.|-||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999887655
No 373
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.88 E-value=1.1 Score=46.04 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
..+.+.|.|++|||||+..+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56889999999999999887665443
No 374
>PRK12608 transcription termination factor Rho; Provisional
Probab=79.72 E-value=1.6 Score=52.76 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 677889999988899999999999999999999998887754
No 375
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.67 E-value=2.2e+02 Score=37.63 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000468 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1473)
Q Consensus 1010 ~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~~~~ 1054 (1473)
.++...++++++.....+..+++.+..+...++.|+..|+.+...
T Consensus 575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555666667777777666543
No 376
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.65 E-value=1.3e+02 Score=34.99 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 000468 1020 TEEKVGQLQESMQRLEEKLCNSESENQVIRQQAL 1053 (1473)
Q Consensus 1020 ~e~el~~L~~~~~~Leekl~ele~en~~L~q~~~ 1053 (1473)
...++..-.+.++.|++++..|+.+...|..+..
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555566666666666666666666665543
No 377
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.62 E-value=1.3 Score=49.46 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999998877544
No 378
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.61 E-value=2.3 Score=46.58 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 140 YRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 140 y~~m~~-~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
++.+.. .+-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344444 446799999999999999999999988864
No 379
>PRK05922 type III secretion system ATPase; Validated
Probab=79.57 E-value=1.6 Score=54.04 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
++...-+|...+..-++.|-|.|.|.+|+|||+..+.+.++.
T Consensus 140 ~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 140 IFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred ecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 344455556666677899999999999999999988887654
No 380
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=79.55 E-value=2 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
+.+=.|+|+|-||+|||+.+..+-++|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999999999888
No 381
>PRK06835 DNA replication protein DnaC; Validated
Probab=79.52 E-value=3 Score=50.07 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988753
No 382
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.51 E-value=15 Score=46.33 Aligned_cols=26 Identities=8% Similarity=0.304 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000468 1020 TEEKVGQLQESMQRLEEKLCNSESEN 1045 (1473)
Q Consensus 1020 ~e~el~~L~~~~~~Leekl~ele~en 1045 (1473)
.+.++..|..++.+-.+.+.+|+.+.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 383
>PRK06921 hypothetical protein; Provisional
Probab=79.44 E-value=1.8 Score=50.46 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
...++++.|++|+|||..+..|.+.+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 56899999999999999999988877643
No 384
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.43 E-value=1.3 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999887654
No 385
>PRK14528 adenylate kinase; Provisional
Probab=79.41 E-value=1.4 Score=48.31 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.4
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yl 173 (1473)
+.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987766
No 386
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=79.32 E-value=1.3 Score=49.08 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999988887543
No 387
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.27 E-value=2.5 Score=53.28 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=37.1
Q ss_pred HHhhccCCCCC--CchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~-~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
++|+-....+. ++|+ ....+.+... +-++++|++|+.|.|||+.++.+.+.+-
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45665555444 4565 3344555544 4568899999999999999999988764
No 388
>PRK13768 GTPase; Provisional
Probab=79.17 E-value=1.5 Score=50.67 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998643
No 389
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.17 E-value=1.3 Score=55.87 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+-.+.=|.||||||||+.+|.|+..+--
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35578888999999999999999887754
No 390
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=79.15 E-value=1.3 Score=53.24 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.+.+.+.|-||||||||+.+|.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4678999999999999999999988653
No 391
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.12 E-value=2.4 Score=54.94 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=38.4
Q ss_pred HHhhccCCCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 118 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
++|+-..+.++- .|+...-..++ ...+..+++|++|++|.|||+.++.+.++|-.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456655555553 45443322332 23456899999999999999999999999864
No 392
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.11 E-value=2.2 Score=46.56 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
+..-.|+++|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45569999999999999999999998853
No 393
>PRK06936 type III secretion system ATPase; Provisional
Probab=79.10 E-value=1.8 Score=53.64 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
+...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 44444555666666789999999999999999988777654
No 394
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=79.09 E-value=31 Score=35.13 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000468 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1473)
Q Consensus 1011 ~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~ 1049 (1473)
.++.++++.++-++..|+...+.+++++.++..++...-
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777888888888888888888888877665443
No 395
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.09 E-value=18 Score=33.34 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000468 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1473)
Q Consensus 978 L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~el 1041 (1473)
|+.++..|+..++.+..++..-...+..+..+.+....+|...-.++..|..+++.|.+++.+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666665555555554444444444445555566666667777777777777665443
No 396
>PRK00698 tmk thymidylate kinase; Validated
Probab=79.08 E-value=1.8 Score=47.71 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988643
No 397
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=79.07 E-value=2e+02 Score=36.99 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVK----KLEDTEEKVGQLQESMQRLEEKLCNSESENQV 1047 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~----~L~~~e~el~~L~~~~~~Leekl~ele~en~~ 1047 (1473)
......|.++...++.++..+++++..+...+.....+...+.. ++.....++.-...+++..+..+..++.++..
T Consensus 181 ~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~ 260 (629)
T KOG0963|consen 181 AEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQ 260 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666665554444333322221111 12233344444555555555556666666665
Q ss_pred HHHHH
Q 000468 1048 IRQQA 1052 (1473)
Q Consensus 1048 L~q~~ 1052 (1473)
|+.+.
T Consensus 261 L~~ql 265 (629)
T KOG0963|consen 261 LREQL 265 (629)
T ss_pred HHHHH
Confidence 55553
No 398
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.05 E-value=3 Score=50.77 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=43.2
Q ss_pred HHHHhhccCCCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 116 MMEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 116 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
..++|+-....++--|-.++ +..+..... .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 7 ~~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34677777777776665543 445555544 56789999999999999999999888764
No 399
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=78.99 E-value=1.5 Score=47.92 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla 174 (1473)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34699999999999999999988653
No 400
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.98 E-value=1.4 Score=47.81 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876543
No 401
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.97 E-value=1.4 Score=50.29 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876544
No 402
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.92 E-value=24 Score=36.15 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000468 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1473)
Q Consensus 1013 ~~~~L~~~e~el~~L~~~~~~Leekl~ele~en 1045 (1473)
+..++++++.+...+.+-+-+-.+++.+|+...
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv 105 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADV 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 444444555554444443333333333444333
No 403
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.91 E-value=1.8 Score=46.44 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
..|.|.|.||||||+.++.+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 404
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.86 E-value=1.5 Score=51.66 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYLGG 178 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~~~ 178 (1473)
.|++.|++|+|||..++.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 405
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.86 E-value=1.2 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~ 171 (1473)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999998755
No 406
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=78.82 E-value=1.6 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~y 172 (1473)
+++.+++.|.||+|||.....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999977766543
No 407
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.79 E-value=0.64 Score=61.69 Aligned_cols=60 Identities=28% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1473)
Q Consensus 977 ~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Lee 1036 (1473)
.+..++..++.++.+++.++.+...+...+.-+...+..++..++.+..+|..+.+.|++
T Consensus 360 ~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 360 ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333332222222233333444444444444444444443
No 408
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=78.73 E-value=1.8 Score=40.81 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~~ 176 (1473)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999873
No 409
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.71 E-value=1.7e+02 Score=35.73 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 976 ESLTAEVDSLKALLLSERQSAEEARKACMD 1005 (1473)
Q Consensus 976 ~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~ 1005 (1473)
..+..-.+.|++++++++..+..++++..+
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788888888777777766543
No 410
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.68 E-value=2.3 Score=56.31 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+...++..++++.|++|+|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 557777778888899999999999999999998765
No 411
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=78.62 E-value=0.94 Score=59.57 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~~~ 178 (1473)
...|.|.|.|+||||||+.+|+++.++.--.|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35789999999999999999999988765444
No 412
>PF13479 AAA_24: AAA domain
Probab=78.58 E-value=1.2 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKML 169 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~i 169 (1473)
+++..|+|.|+||+|||..++.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999877654
No 413
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=78.57 E-value=1.3e+02 Score=34.38 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000468 1013 LVKKLEDTEEKVGQLQESMQRL 1034 (1473)
Q Consensus 1013 ~~~~L~~~e~el~~L~~~~~~L 1034 (1473)
++++|++.+++|.+|.+.+..+
T Consensus 283 LQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 283 LQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 414
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.53 E-value=1.4 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla 174 (1473)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999988764
No 415
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=78.52 E-value=1.3 Score=49.35 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999988876543
No 416
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.44 E-value=1 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988877654
No 417
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=78.29 E-value=1.5 Score=48.98 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999888776543
No 418
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=78.27 E-value=3 Score=52.40 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=39.4
Q ss_pred HHhhccCCCCCCchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 118 EQYKGAQFGELSPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 118 ~~y~~~~~~~~~PHifavA~~Ay~~m~~-~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
++|+-..+.++--|--.+. ..+.+.. .+-.+++|++|++|.|||+.++.+.++|..
T Consensus 9 ~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4566555555544443433 3444444 445799999999999999999999999864
No 419
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=78.23 E-value=1.8 Score=52.94 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=32.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~~~~~~~~~~~~ie 188 (1473)
..|+|-+-|+|||||++..+++.||+-.-+|+-.-++..|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999766654333444443
No 420
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.20 E-value=2.1e+02 Score=36.59 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 000468 800 RTSYLTARSSAIQLQTGLRAMVARN 824 (1473)
Q Consensus 800 Rr~y~~~r~aai~IQs~~Rg~~aRr 824 (1473)
|+.+..++.-+...|+++-++..++
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 4444555555556666666655554
No 421
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.17 E-value=2.7 Score=48.79 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 129 SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 129 ~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.|++=.+-+.+.+.+.. +..|++.|++|+|||+.++.+-+.+
T Consensus 4 t~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CHHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35666666777666653 5799999999999999999876533
No 422
>PLN02796 D-glycerate 3-kinase
Probab=78.15 E-value=1.4 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla 174 (1473)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 488999999999999998887764
No 423
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=78.12 E-value=2.6 Score=50.22 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=34.0
Q ss_pred CCCCchHHHHHHHHHHHH----HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 126 GELSPHVFAIADVAYRAM----INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 126 ~~~~PHifavA~~Ay~~m----~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
..+||---+.+......| ..-.....|++.|-+|||||+.++.+-+.|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456674444444444443 345678899999999999999999987654
No 424
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.06 E-value=2.8 Score=45.84 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
...+.+++.|.+|.|||..+..+.+.+..-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 357899999999999999999999988763
No 425
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=78.00 E-value=4.1 Score=50.43 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.|...+..-++.|.+.|.|.||+|||+..+.++++.
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444445455788999999999999999988776543
No 426
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.92 E-value=1.6 Score=50.76 Aligned_cols=78 Identities=27% Similarity=0.407 Sum_probs=50.3
Q ss_pred ccCccccccCCceEEecCCCCCCCCCCHHHHHHh-hc-cCC--CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 000468 87 ELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQY-KG-AQF--GELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGK 162 (1473)
Q Consensus 87 ~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y-~~-~~~--~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGK 162 (1473)
.-|.=|++.|.-=+-||-|+.-. -|+--. +.- .. ... -.+||=+..+++ ..+=-|+|+|..||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~vl-R~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYALVL-RLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEEEE-eccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCCCcH
Confidence 45678999998888888887542 111100 000 00 001 135665555433 4567899999999999
Q ss_pred hhhHHHHHHHHHH
Q 000468 163 TETTKMLMRYLAY 175 (1473)
Q Consensus 163 Tes~k~im~yla~ 175 (1473)
|+|.-.++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999954
No 427
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=77.85 E-value=3.9 Score=50.30 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=40.7
Q ss_pred CHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhc---------CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 113 DTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE---------GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~---------~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
++..+..|-+...-..+.-+-+++..+|.+..+. ..+..|++.|.+|+|||+.++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555555544444555666666666543332 135899999999999999999886654
No 428
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.78 E-value=1.5 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.2
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887665
No 429
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.73 E-value=2.9 Score=53.17 Aligned_cols=55 Identities=22% Similarity=0.391 Sum_probs=40.9
Q ss_pred HHHhhccCCCCC--CchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 117 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~-~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.++|+-+.+.++ .+||-. +.+++. ..+-+++++++|..|.|||++++.+.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467776666665 355543 444444 4567899999999999999999999998854
No 430
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=77.71 E-value=2.1 Score=55.14 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
|-|.++=.++|.. +.++.-.|+++|-||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3445544444433 4456679999999999999999999998865
No 431
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.60 E-value=66 Score=33.01 Aligned_cols=10 Identities=20% Similarity=0.029 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000468 986 KALLLSERQS 995 (1473)
Q Consensus 986 k~~l~~l~~~ 995 (1473)
+.++.+++.+
T Consensus 74 ~~el~~l~~r 83 (120)
T PF12325_consen 74 EQELEELQQR 83 (120)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 432
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=77.54 E-value=3.8 Score=43.30 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45678999999999999999999998864
No 433
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=77.53 E-value=1.6 Score=48.93 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999988877543
No 434
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=77.52 E-value=2.4 Score=53.93 Aligned_cols=40 Identities=30% Similarity=0.559 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
||+..++-...+ ..||.+||-||.|||||+ .|-+||+..|
T Consensus 52 I~~~r~~il~~v---e~nqvlIviGeTGsGKST---QipQyL~eaG 91 (674)
T KOG0922|consen 52 IYKYRDQILYAV---EDNQVLIVIGETGSGKST---QIPQYLAEAG 91 (674)
T ss_pred HHHHHHHHHHHH---HHCCEEEEEcCCCCCccc---cHhHHHHhcc
Confidence 666666555554 468999999999999998 6889998765
No 435
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=77.47 E-value=1.6 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..+.|...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999888876543
No 436
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=77.46 E-value=1.3 Score=57.55 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+.|.+.|.|+||||||+..|.++..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46899999999999999999999887743
No 437
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.38 E-value=2.4e+02 Score=36.78 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000468 886 ALKEAKDKLEKRVEELTWRL 905 (1473)
Q Consensus 886 ~l~~~~~~LE~kv~eL~~~l 905 (1473)
.+.+.-..++.++..+...+
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l 124 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDEL 124 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433
No 438
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.37 E-value=1.6 Score=48.80 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+ +.+.|.|+||||||+..+.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999988886544
No 439
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.35 E-value=1.6 Score=49.62 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999887654
No 440
>PRK00023 cmk cytidylate kinase; Provisional
Probab=77.33 E-value=1.7 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla 174 (1473)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 441
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=77.25 E-value=1.7 Score=46.69 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998887654
No 442
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=77.19 E-value=1.5 Score=47.88 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
-|||+|.||||||+.++.+++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998874
No 443
>PRK10436 hypothetical protein; Provisional
Probab=77.18 E-value=1.6 Score=54.84 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.++.+.. ...=-|+|+|..|||||++...+++++.
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 3444442 2345799999999999999998888874
No 444
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=77.18 E-value=1.7 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887653
No 445
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=77.14 E-value=2.9 Score=53.88 Aligned_cols=56 Identities=23% Similarity=0.422 Sum_probs=39.8
Q ss_pred HHhhccCCCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
+.|+-+.+.++ .+|+-..=..++. ..+-.+++|++|+.|.|||+++|.+.+.|-..
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45555555444 5676654444433 35568999999999999999999999887643
No 446
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=77.14 E-value=1.7 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988876544
No 447
>PRK14531 adenylate kinase; Provisional
Probab=77.13 E-value=1.9 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.4
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yla 174 (1473)
|-|+|.|.+|||||+.++.+-+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 448
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=77.03 E-value=1.7 Score=48.28 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998876543
No 449
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.99 E-value=2.5 Score=46.74 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~ 176 (1473)
-||++|-.|||||+-+|.+-+-|-.-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 38999999999999999999988753
No 450
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.92 E-value=1.9e+02 Score=35.49 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000468 1020 TEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1473)
Q Consensus 1020 ~e~el~~L~~~~~~Leekl~ele~en~~L~q 1050 (1473)
..+.+.+.+++-...++-+.+|..+...++.
T Consensus 358 m~d~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 358 MNDILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555543
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.88 E-value=2.1e+02 Score=36.06 Aligned_cols=27 Identities=4% Similarity=0.174 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 972 TEKIESLTAEVDSLKALLLSERQSAEE 998 (1473)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~l~~~~~~ 998 (1473)
+++++-+..+.+.|.+-++.+..+.++
T Consensus 661 k~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 661 KKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666555555
No 452
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=76.84 E-value=1.8 Score=48.58 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~ 171 (1473)
...+.+.|.|+||||||+..|.|..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999988764
No 453
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=76.71 E-value=1.8 Score=49.22 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887654
No 454
>PRK10646 ADP-binding protein; Provisional
Probab=76.70 E-value=4 Score=43.49 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 149 ~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.-.|++.|+-|||||+-+|.+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999999883
No 455
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=76.64 E-value=3.9 Score=50.54 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=36.8
Q ss_pred CCCHHHHHHhhccCCCCCCchHHHHHHHHH---HHHHh--cC--------CCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 111 LYDTHMMEQYKGAQFGELSPHVFAIADVAY---RAMIN--EG--------KSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 111 lY~~~~~~~y~~~~~~~~~PHifavA~~Ay---~~m~~--~~--------~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
+..+..+..+-+...-..+--+=+++...| ..+.. .. ..-+|++.|++|+|||+.+|.+-+.+
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 445677777655442222222233443344 44432 11 13689999999999999999875443
No 456
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=76.64 E-value=5.4 Score=33.32 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=32.5
Q ss_pred CcEEEEeCCC-CCeEEEEEEEEc-CCeEEEEeCC-CcEEEEeCCCc
Q 000468 10 GSHVWVEHPE-LAWVDGEVFKIS-AEEVHVHTTN-GQTVITNISKV 52 (1473)
Q Consensus 10 g~~vwv~~~~-~~w~~~~v~~~~-~~~~~v~~~~-g~~~~~~~~~~ 52 (1473)
|+.|-++.++ ..|-+|+|.++. ++.+.|...| |....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 6777777654 889999999988 6678888755 88776665543
No 457
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.62 E-value=1.8 Score=48.64 Aligned_cols=25 Identities=40% Similarity=0.512 Sum_probs=21.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~ 171 (1473)
...+.+.|.|+||||||+..|.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999988764
No 458
>PRK10908 cell division protein FtsE; Provisional
Probab=76.59 E-value=1.8 Score=48.73 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.|...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999887653
No 459
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=76.56 E-value=1.7 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~ 175 (1473)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 460
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=76.54 E-value=1.7 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHH
Q 000468 148 KSNSILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~ 171 (1473)
..-.|.|.|.||+||++..|.+-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 456899999999999998776543
No 461
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.54 E-value=1.8 Score=48.21 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
.+.+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887653
No 462
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.53 E-value=1.4e+02 Score=33.67 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000468 922 EIAKLQDALQAMQLQVEEANFRI 944 (1473)
Q Consensus 922 e~~~L~~~~eeLe~qlee~~~~l 944 (1473)
+...+...+..++.-..++..+.
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444444444444443
No 463
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=76.52 E-value=1.8 Score=48.04 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yla~~ 176 (1473)
.++|.|.||||||...+.++.-++..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 78999999999999999988888763
No 464
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=76.49 E-value=1.8 Score=49.64 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999988876543
No 465
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=76.44 E-value=1.7 Score=49.34 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999998886543
No 466
>PRK12704 phosphodiesterase; Provisional
Probab=76.32 E-value=1e+02 Score=39.60 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 923 IAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1473)
Q Consensus 923 ~~~L~~~~eeLe~qlee~~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~ 1002 (1473)
...++....+.+.-++++..+...+.++...+.++. ....-++++.+....+.++...++++...++.
T Consensus 30 ~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE------------~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~ 97 (520)
T PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEE------------IHKLRNEFEKELRERRNELQKLEKRLLQKEEN 97 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q 000468 1003 CMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALAMS 1056 (1473)
Q Consensus 1003 ~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~~~~~~ 1056 (1473)
+..-....++..++|...++++...+++++.+++++.++..+...-......++
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 467
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=76.27 E-value=1.1 Score=46.57 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=19.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~ 171 (1473)
..+..|+|.||+|+||+..++++-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5678999999999999998775544
No 468
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.27 E-value=1.9 Score=48.09 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999888653
No 469
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.26 E-value=28 Score=37.73 Aligned_cols=66 Identities=23% Similarity=0.409 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR--NTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1473)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~l~~~~~~l~~~~~~~~~~--~~~~~~~L~~~e~el~~L~~~~~~Lee 1036 (1473)
....+..|..++..|+.++..++..+..++.++..+... .+++...+.+++.++..|...+..|+.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888889988888888888888888877554 356666666777777776666666654
No 470
>PRK03839 putative kinase; Provisional
Probab=76.25 E-value=1.9 Score=46.91 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000468 151 SILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 151 sIiisGESGAGKTes~k~im~yl 173 (1473)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999887765
No 471
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=76.25 E-value=1.8 Score=48.06 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998887653
No 472
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=76.21 E-value=1.7 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000468 150 NSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 150 QsIiisGESGAGKTes~k~im~yl 173 (1473)
+-||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999988776
No 473
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=76.20 E-value=1.9 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
.+.+.+.|.|+||||||+..+.|+..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998888654
No 474
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=76.18 E-value=1.2 Score=50.31 Aligned_cols=28 Identities=39% Similarity=0.471 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla 174 (1473)
.+.+.+.|.|+||||||+..|.++..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998876553
No 475
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.16 E-value=1.9 Score=46.60 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988876543
No 476
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=76.16 E-value=1.9 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999888776543
No 477
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=76.12 E-value=1.8 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998887754
No 478
>PRK02496 adk adenylate kinase; Provisional
Probab=76.05 E-value=1.9 Score=46.97 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yl 173 (1473)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 479
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=76.01 E-value=1.9 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=19.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLM 170 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im 170 (1473)
.+.+.+.|.|+||||||+.+.-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999974333
No 480
>PRK06526 transposase; Provisional
Probab=76.01 E-value=2.2 Score=49.42 Aligned_cols=29 Identities=21% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 148 ~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
..+.+++.|.+|+|||..+..+...++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 45679999999999999999998877753
No 481
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=75.96 E-value=1.9 Score=48.70 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|++|||||+..|.|...+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988887654
No 482
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.95 E-value=2.5e+02 Score=36.46 Aligned_cols=9 Identities=22% Similarity=0.870 Sum_probs=5.3
Q ss_pred ccceeeecc
Q 000468 713 GKTKVFLRA 721 (1473)
Q Consensus 713 G~TkVFlr~ 721 (1473)
|+++.|+-.
T Consensus 105 grs~~~iNg 113 (563)
T TIGR00634 105 GRSRAYLNG 113 (563)
T ss_pred CceEEEECC
Confidence 667666543
No 483
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.95 E-value=2.9 Score=51.00 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=31.6
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000468 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1473)
Q Consensus 140 y~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~~ 177 (1473)
+....+...+=.|+|.|.+|+|||.++|++|+-|-..+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 55556666666799999999999999999999987654
No 484
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.94 E-value=1.3e+02 Score=38.58 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000468 918 EKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAE 997 (1473)
Q Consensus 918 ~k~~e~~~L~~~~eeLe~qlee~~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~l~~~~~ 997 (1473)
.+......++....+.+.-.+++..+...+.++...+.++. ....-++++.+.+..+.++...++++.
T Consensus 19 ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE------------~~~~R~Ele~el~~~e~rL~qrE~rL~ 86 (514)
T TIGR03319 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEE------------VHKLRAELERELKERRNELQRLERRLL 86 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q 000468 998 EARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALAMS 1056 (1473)
Q Consensus 998 ~l~~~~~~~~~~~~~~~~~L~~~e~el~~L~~~~~~Leekl~ele~en~~L~q~~~~~~ 1056 (1473)
..++.+..-....++..++|...++++...+++++.++++..++..+..........++
T Consensus 87 qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt 145 (514)
T TIGR03319 87 QREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT 145 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 485
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.88 E-value=3.5 Score=45.71 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
+|++.+.. ..++.++|.|..|+|||.+.+.+.+++...
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 45555554 457889999999999999999999988774
No 486
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=75.88 E-value=1.9 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999887644
No 487
>PRK05439 pantothenate kinase; Provisional
Probab=75.86 E-value=4 Score=48.52 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=26.3
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000468 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1473)
Q Consensus 145 ~~~~~QsIiisGESGAGKTes~k~im~yla~~ 176 (1473)
..+..--|.|+|-||||||+.++.+...|...
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34566789999999999999999988877543
No 488
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.82 E-value=2 Score=47.44 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
...+.+.|.|++|||||+..+.++.-+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999888876543
No 489
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=75.79 E-value=6.4 Score=49.02 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
++...-.|...+..-++.|-+.|.|.||+|||+..+.++++.
T Consensus 158 ~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 158 VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred chhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCC
Confidence 455566666677777899999999999999999988887643
No 490
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=75.69 E-value=3.2 Score=54.50 Aligned_cols=57 Identities=23% Similarity=0.421 Sum_probs=39.1
Q ss_pred HHHhhccCCCCCCchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 117 MEQYKGAQFGELSPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 117 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~-~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
.+.|+-..+.++--|-.++ ...+.... .+-..++|++|+.|.|||++|+.+.+.|-.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v--~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIV--QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4567665555554333322 33444444 456899999999999999999999887754
No 491
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.59 E-value=3.1 Score=53.82 Aligned_cols=54 Identities=28% Similarity=0.505 Sum_probs=38.3
Q ss_pred HHhhccCCCCC--CchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000468 118 EQYKGAQFGEL--SPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~-~~~~QsIiisGESGAGKTes~k~im~yla~ 175 (1473)
++||-..+.++ .+|+ -++..++.. .+-.+++|++|..|.|||.+++.+-+.|-.
T Consensus 7 rKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45665555444 4565 334444444 445789999999999999999999998854
No 492
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=75.56 E-value=2.2 Score=46.46 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000468 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1473)
Q Consensus 152 IiisGESGAGKTes~k~im~yla~ 175 (1473)
|+|.|-.|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 493
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=75.54 E-value=2 Score=48.25 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~y 172 (1473)
...+.+.|.|+||||||+..|.|+..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998887654
No 494
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.52 E-value=4.5 Score=48.78 Aligned_cols=57 Identities=21% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHhhccCCCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 116 MMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 116 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
..++|+-....++--|-=++..-- ......+-++++++.|++|.|||++++.+.+.|
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~-~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLK-NAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHH-HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
No 495
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.48 E-value=3 Score=53.85 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHhhccCCCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
++|+-+.+.++ ..|+-..-..++. ..+-.+++|++|+.|.|||++++.+.+.|
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~---~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALE---QQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHh
No 496
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.46 E-value=3.3 Score=51.64 Aligned_cols=61 Identities=31% Similarity=0.368 Sum_probs=0.0
Q ss_pred CHHHHHHhhccCCCCCCchHHHHHHHHHHHH-----HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000468 113 DTHMMEQYKGAQFGELSPHVFAIADVAYRAM-----INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m-----~~~~~~QsIiisGESGAGKTes~k~im~yl 173 (1473)
.+-.+..|+-....++.-|-=.|++-=-.-- ...-+++-.+|+|.||+|||++.|.+-+=|
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
No 497
>PRK06620 hypothetical protein; Validated
Probab=75.44 E-value=3.4 Score=46.55 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh--cCCC--eEEEecCCCCCCchhhHHHHHHH
Q 000468 134 AIADVAYRAMIN--EGKS--NSILVSGESGAGKTETTKMLMRY 172 (1473)
Q Consensus 134 avA~~Ay~~m~~--~~~~--QsIiisGESGAGKTes~k~im~y 172 (1473)
..|-.|.+.+.. ...+ .++++.|++|+|||..++.+-+.
T Consensus 25 ~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 25 DQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred HHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
No 498
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=75.32 E-value=1.3 Score=48.32 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000468 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im~yla~~~~ 178 (1473)
.....+.|.|+||||||+..|.+...+.-.+|
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 54 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD 54 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCc
No 499
>PLN02318 phosphoribulokinase/uridine kinase
Probab=75.30 E-value=3 Score=53.16 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCC-eEEEecCCCCCCchhhHHHHHHHH
Q 000468 133 FAIADVAYRAMINEGKS-NSILVSGESGAGKTETTKMLMRYL 173 (1473)
Q Consensus 133 favA~~Ay~~m~~~~~~-QsIiisGESGAGKTes~k~im~yl 173 (1473)
|=++-+|-.-+...... --|-|+|.||||||+.++.|+..+
T Consensus 48 ~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 48 FFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred hhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
No 500
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=75.29 E-value=2 Score=48.73 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000468 147 GKSNSILVSGESGAGKTETTKMLM 170 (1473)
Q Consensus 147 ~~~QsIiisGESGAGKTes~k~im 170 (1473)
...+.+.|.|+||||||+..|.|+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Done!