BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000469
(1472 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1
SV=3
Length = 2012
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 347/1494 (23%), Positives = 612/1494 (40%), Gaps = 265/1494 (17%)
Query: 76 VAFLKMLSTLASSQEGASKVYELL-----------QGKAFRSIGWRTLFDCLSIYDEKFK 124
+ +LKML LA+ + A + LL QG + W F L +Y E +
Sbjct: 511 IPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLMLYHEHLR 570
Query: 125 QSLQTGGAL----LPD--FQEGDAKALVAYLNVLQKVM---ENGNS--IERKNWFPDIEP 173
+ L + ++ LP + + L+A+L + ++ EN E W P +
Sbjct: 571 KDLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVI 630
Query: 174 LFKLLSYENVPPYLKGALRNAIAACIHVSLVMKDNIWRLLEQYDLPVVVGTHVGNTAQ-P 232
L L ++PP LK L +AA S + ++W+ LE T + T + P
Sbjct: 631 LGLLQC--SIPPVLKAELLKTLAA-FGKSPEIAASLWQSLEY--------TQILQTVRIP 679
Query: 233 IAGQVYDMQFELNEIEARREQYPSTISFLNLLNALIAEEKDVSD-----RGRRFVGIFRF 287
Q ++ ELNEIE+R E+YP T +F L++ L+ E S+ R F +F
Sbjct: 680 SQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLV-ESSFPSNLGAGLRPPGFDPYLQF 738
Query: 288 VYDHVFGPFPQRAYADPCEKWQLVVACLKHFHMILNMYDIQEEDIDNAVEQSSTLTQSSP 347
+ D VF F RAY EKW++ L+ F+ +L Y+ Q ED V+Q L
Sbjct: 739 LRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDF---VDQFVELQGEEI 795
Query: 348 IQMQLPVLELLKDFMSGKAVFRNIMGILQPGVDSIITERNNQIYGPL-----LEKAVQLS 402
I + P L+ ++ + + +L+ GV + T Y P LEKAVQ
Sbjct: 796 IAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDT------YAPFPGKKHLEKAVQHC 849
Query: 403 LEIVILVFEKDLLLSDFWR---------PLYQPVDVI--LSQDHNQIVALLEYVRY-DFL 450
L ++ L +K+ L D R PL Q + I ++ + +V + Y+ + +
Sbjct: 850 LALLNLTLQKENLFMDLLRESQLALIVCPLEQLLQGINPRTKKADNVVNIARYLYHGNTN 909
Query: 451 PQIQQCSIKIMSILSSRMVGLVQLLLKYNAASS----LVEDYAACLE-------LRSEES 499
P++ S KI+ +S ++L+ + S L+ + CL+ +R EE
Sbjct: 910 PELAFESAKILCCISCNSNIQIKLVGDFTHDQSISQKLMAGFVECLDCEDAEEFVRLEEG 969
Query: 500 QIIEKS----GDDPGVLIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQ-------P 548
+EK + + I+ LLI ++ PN+ LL F+L P+ T LQ P
Sbjct: 970 SELEKKLVAIRHETRIHILNLLITSLECNPPNLALYLLGFELKKPVSTTNLQDPGVLGCP 1029
Query: 549 KFHYSCLKIILEILEKVSKPDVNAL-------LHEFGFQLLYELCLDPLTCGPTMDLLSN 601
+ +CL IL ILEK ++ + L E +Q++Y+LC T GPTM L
Sbjct: 1030 R---TCLHAILNILEKGTEGRTGPVAVRESPQLAELCYQVIYQLCACSDTSGPTMRYLRT 1086
Query: 602 KKYQFFVKHLDAIGVAPLPKRNSNQALRISSLHQRAWLLKLLAIELHAGYGSSSTHQEAC 661
+ F L + SN+ IS L+Q +WL+K +IEL +S Q +
Sbjct: 1087 SQ-DFLFSQLQYLPF-------SNKEYEISMLNQMSWLMKTASIELRV---TSLNRQRSH 1135
Query: 662 QTILAHLF-----------GRDHIEDTDRTLSLPFMVQNITEHAGTRTISKSKVLELLEV 710
L HL G IED +R++S F+ H T T + K+L +L+
Sbjct: 1136 TQRLLHLLLDDMPVKPYSDGEGGIEDENRSVS-GFL------HFDTATKVRRKILNILDS 1188
Query: 711 VQFRSPDTAMKLSQIVSNMKYDLL----AEEILGNPTTSGKGGIYYYSERGDRLIDLSSF 766
+ F +I ++ D E+++ N + + RG + ++
Sbjct: 1189 IDFSQ--------EIPEPLQLDFFDRAQIEQVIAN--------CEHKNLRGQTVCNVKLL 1232
Query: 767 SDKLWKKLNIVYPQLSNFGSEAELNDVKEAIQQLLRWGWKYNKNLEEQAAQLHMLTGWSQ 826
L ++N L + + + E I +L++ NK L+ A+ H L W Q
Sbjct: 1233 HRVLVAEVNA----LQGMAAIGQRPLLMEEISTVLQYVVGRNKLLQCLHAKRHALESWRQ 1288
Query: 827 VVEV---SVSRRISALGNRSEILYQIL----DACLGASASPDCSLRMA-FILCQVALTCM 878
+VE+ + + + +R I+ IL D L A+ + +A + A
Sbjct: 1289 LVEIILTACPQDLIQAEDRQLIIRDILQDVHDKILDDEAAQELMPVVAGAVFTLTAHLSQ 1348
Query: 879 AKLRDEK-------------FLCPGGLNSDSVTFLDVIMVKQLSNGACHSLLFKLIMAIL 925
A L ++K F+ S ++ + + + + +L KL+ IL
Sbjct: 1349 AVLTEQKETSVLGPAEAHYAFMLDSCFTSPPPEENPLVGFASIGDSSLYIILKKLLDFIL 1408
Query: 926 RNESS-EALRRRQYALLLSYFQYCQHMLAPDVPTTVLQYLLLDEQDGEDLDLQKIDKEQA 984
+ + +R Y LL Y Q Q PD + + ED+ K+ +E
Sbjct: 1409 KTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPEDV-FSKLQRE-- 1465
Query: 985 ELTHANFSTLRKEAQAILDLFIKDATQGSEPGKTLSLYVLDALICIDHEKYFLNQLQSRG 1044
N + + A++++ +DA G E G+ L+L +LD ++ +D ++ +L L + G
Sbjct: 1466 -----NIAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSG 1520
Query: 1045 FLRSCLMNVSNVSYQDGKRSLDT--------LQRACTLEAELALLLRISHKYGKSGAQVL 1096
+L+ V S + R+L + L+ T E+++A L R++ + GA L
Sbjct: 1521 YLK-----VLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKI--QQGALEL 1573
Query: 1097 FSMGSLEHIASCKAVGLQGSLRRVATKPRRALG---------GDIDRQRMIVTPMLRLVF 1147
G + +A C+ + R T P+ G +DR R I+ P L+L
Sbjct: 1574 LRSGVIVRLAQCQVYDM-----RPETDPQSMFGMRDPPMFIPTPVDRYRQILLPALQLC- 1627
Query: 1148 SLTSLVDTSDFFEVKNKVVREVMDFIKGHQLLVDQVLQ-ENISEADELTMEQINLVVGIL 1206
++ TS + + +V+ F+ H + +L+ +++S +++++ L+ GI+
Sbjct: 1628 ---QVILTSSMAQ-HLQAAGQVLQFLISHSDTIQAILRCQDVSAG---SLQELALLTGII 1680
Query: 1207 SK-VWP---------------YEESDEYG-FVQGLFGMMSSLFSSD-LENLTFSQ---SA 1245
SK P E G F + G++S SD L F
Sbjct: 1681 SKAALPGILSELDVDVNEGSLMELQGHIGRFQRQCLGLLSRFGGSDRLRQFKFQDDNVEG 1740
Query: 1246 RSLENQRKSELKKFQLCFSLSSYLYFMVTKKSLRLQ-----VSRSLDDYNTNSGLQQLT- 1299
+ + + EL Q+C ++ Y ++ + S Q + SL + G +Q T
Sbjct: 1741 DKVSKKDEIELAMQQICANVMEYCQSLMLQSSPTFQHAVCLFTPSLSETVNRDGPRQDTQ 1800
Query: 1300 --------LTSLG---SLLNSATAVLERAAEEKSLLLNKIRDINELSRQEVDEVIN--MC 1346
L LG LL + + ++K++++ +L E+ E+ M
Sbjct: 1801 APVVPYWRLPGLGIIIYLLKQSANDFFSYYDSHRQSVSKLQNVEQLPPDEIKELCQSVMP 1860
Query: 1347 VREDYVSSSDNIQKRRYV-AMVEMCQVAGNRDQLITLLLLLTEHVLNVILIHFQ 1399
D +S++ ++YV A + +V NR +L++L + E L ++ H +
Sbjct: 1861 AGVDKISTA-----QKYVLARRRLVKVINNRAKLLSLCSFIIETCLFILWRHLE 1909
>sp|Q6NKL5|RECF_CORDI DNA replication and repair protein RecF OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=recF PE=3 SV=1
Length = 397
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 253 QYPSTISFLNLLN---------ALIAE-----EKDVSDRGRRFVGIFRFVYDHVFGPFPQ 298
+Y ST+ F +++ A++AE +K++ DRG VG R D V G +P
Sbjct: 232 RYVSTVPFADVVELPSPEEFEAAMLAELGQCRDKEI-DRGVSLVGPHRDDLDVVLGDYPA 290
Query: 299 RAYADPCEKWQLVVAC-LKHFHMILN--------MYDI-QEEDIDNAVEQSSTLTQSSPI 348
+ +A E W + ++ L FH++ N + D+ E D + S ++ +
Sbjct: 291 KGFASHGETWSMCLSLRLAEFHLLRNDGTDPVLILDDVFAELDTQRREKLVSVTAEAEQV 350
Query: 349 QMQLPVLELLKDFMSGKAVFRNIMGI 374
+ V + L D ++ AV R+ + +
Sbjct: 351 LITAAVGDDLPDTLTESAVHRHFVSV 376
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica
GN=DCL2B PE=2 SV=2
Length = 1377
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 1224 LFGMMSSL-FSSDLENLTFSQSARSLENQRKSELKKFQLCFSLSSYLYFMVTKKSLRLQV 1282
+FGM +SL +S DL +S+ +EN S++ +LS Y+ F TK
Sbjct: 197 IFGMSASLIYSKDLNQHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIV----- 251
Query: 1283 SRSLDDYNTNSGLQQLTLTSLGSLLNSATAVLERAAEEKSLLLNKIRDINELSRQEVDEV 1342
DD N +S L L+ L L L+R SL K R I++L R V +
Sbjct: 252 --HFDDSNISSELHANILSCLNRLTKKHIEALDRKLHGSSLENAKQR-ISKLHRTFVYCL 308
Query: 1343 INMCV 1347
N+ V
Sbjct: 309 YNLGV 313
>sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Petunia hybrida PE=1 SV=1
Length = 479
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 37 LLEFVSEIYQKEPELLSGNDVLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKVY 96
LLE ++EI + P LL +D ++ +++A HT+F +L T+ G S
Sbjct: 257 LLEQIAEIVARHPRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTV----NGFS--- 309
Query: 97 ELLQGKAFRSIGWR 110
KAF GWR
Sbjct: 310 -----KAFAMTGWR 318
>sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Arabidopsis thaliana GN=PAT PE=1 SV=2
Length = 475
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 36 SLLEFVSEIYQKEPELLSGNDVLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKV 95
SLLE ++ I K P LL +D ++ +++A HT+F +L + T+ G S
Sbjct: 252 SLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTV----NGFS-- 305
Query: 96 YELLQGKAFRSIGWR 110
KAF GWR
Sbjct: 306 ------KAFAMTGWR 314
>sp|A5FVN2|HIS8_ACICJ Histidinol-phosphate aminotransferase OS=Acidiphilium cryptum (strain
JF-5) GN=hisC PE=3 SV=1
Length = 364
Score = 35.0 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 1078 LALLLRISHKYGKSGAQVLFSM-GSLEHIASCKAVGLQGSLRRVATKPRRALGGDIDRQR 1136
+ALL++ YG G +++ S G L + + + G+ V P R L DID
Sbjct: 93 IALLIQ---SYGGPGTELVMSRHGFLIYEIAARLAGMN-----VRKAPERNLTADIDAML 144
Query: 1137 MIVTPMLRLVF------SLTSLVDTSDFFEVKNKVVREVMDFIKGHQLLVDQVLQENISE 1190
VTP RLVF SLV SD ++ ++ +V+ L++D E +
Sbjct: 145 AEVTPATRLVFLANPNNPTGSLVPASDVSRLRAELPPDVL-------LVLDAAYAEYVER 197
Query: 1191 AD 1192
AD
Sbjct: 198 AD 199
>sp|Q90977|E2F1_CHICK Transcription factor E2F1 OS=Gallus gallus GN=E2F1 PE=2 SV=1
Length = 403
Score = 34.3 bits (77), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 1278 LRLQVSRSLDDYNTNSGLQQLTLTSLGSLLNSATAVLERAAEEKSLLLNKIRDINELSRQ 1337
L++Q R D N G+Q +T S ++ + V A+ + LL ++RD+ RQ
Sbjct: 137 LKVQKRRIYDITNVLEGIQLITKKSKNNIQWLGSQVAAGASSRQRLLEKELRDLQAAERQ 196
Query: 1338 EVDEVINMC-VREDYVSSSDNIQKRRYVAMVEMCQVAGNRDQLITLLLLLTEHVLNV 1393
+D++I C VR ++ + Q YV ++ + +Q++ ++ E L V
Sbjct: 197 -LDDLIQTCTVRLRLLTEDPSNQHAAYVTCQDLRSIVDPSEQMVMVIKAPPETQLQV 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,903,701
Number of Sequences: 539616
Number of extensions: 20468513
Number of successful extensions: 55172
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 55144
Number of HSP's gapped (non-prelim): 36
length of query: 1472
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1342
effective length of database: 121,419,379
effective search space: 162944806618
effective search space used: 162944806618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)