Query 000469
Match_columns 1472
No_of_seqs 174 out of 228
Neff 7.0
Searched_HMMs 13730
Date Tue Mar 26 16:38:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000469.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_248-252//hhsearch_scop/000469hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1khda1 a.46.2.1 (A:12-80) Ant 3.1 1.3E+02 0.0092 4.6 2.2 27 1322-1348 3-29 (69)
2 d1g9la_ a.144.1.1 (A:) poly(A) 2.7 1.5E+02 0.011 4.2 1.8 48 997-1052 70-117 (144)
3 d1p9sa_ b.47.1.4 (A:) Coronavi 2.6 1.6E+02 0.011 4.1 2.3 80 40-143 203-293 (300)
4 d1qdma1 a.64.1.2 (A:1S-104S) ( 2.3 1.8E+02 0.013 3.6 0.1 35 986-1021 2-36 (104)
5 d2a1ja1 a.60.2.5 (A:837-898) D 2.2 1.9E+02 0.014 3.5 3.1 26 82-107 37-62 (62)
6 d1sxda_ a.60.1.1 (A:) GABP-alp 2.2 1.9E+02 0.014 3.5 1.0 8 1393-1400 76-83 (91)
7 d1vfsa2 c.1.6.1 (A:13-249) Ala 2.2 1.8E+02 0.013 3.7 -0.2 34 988-1022 6-41 (237)
8 d1sxea_ a.60.1.1 (A:) Transcri 2.1 2.1E+02 0.015 3.3 1.0 8 1393-1400 83-90 (97)
9 d2doaa1 a.4.5.81 (A:8-98) RNA 2.1 2.1E+02 0.015 3.3 1.4 20 580-599 9-28 (91)
10 d2p6va1 a.277.1.1 (A:582-678) 2.0 2.2E+02 0.016 3.1 2.7 24 509-532 38-75 (97)
No 1
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=3.10 E-value=1.3e+02 Score=4.64 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 999997653300695519999830014
Q 000469 1322 SLLLNKIRDINELSRQEVDEVINMCVR 1348 (1472)
Q Consensus 1322 ~~~~~kl~~~~~L~~~e~~el~~~~~~ 1348 (1472)
..+.+|+.+..+|+.+|..++....+.
T Consensus 3 ~~il~kl~~g~~Ls~ee~~~~~~~i~~ 29 (69)
T d1khda1 3 QPILEKLFKSQSMTQEESHQLFAAIVR 29 (69)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 999999985999799999999999986
No 2
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.74 E-value=1.5e+02 Score=4.23 Aligned_cols=48 Identities=27% Similarity=0.321 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 13367898730245899605999999999998015843599999711939999998
Q 000469 997 EAQAILDLFIKDATQGSEPGKTLSLYVLDALICIDHEKYFLNQLQSRGFLRSCLMN 1052 (1472)
Q Consensus 997 ~~~~LidvIc~DA~~G~~~~r~~Al~lLd~Lv~ld~~~~il~~L~~~g~L~~li~s 1052 (1472)
.||+|...|- +.+-+-.+||+++ |+++|. .-++..|.....|+.-|+.
T Consensus 70 LGE~Lyp~I~--~~~p~~A~KITGM-----LLEmd~-~ell~lL~~~~~L~~kV~E 117 (144)
T d1g9la_ 70 LGERLFPLIQ--AMHPTLAGKITGM-----LLEIDN-SELLHMLESPESLRSKVDE 117 (144)
T ss_dssp TTSSSHHHHH--HHTTSCCSSHHHH-----TTTSSS-HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHH--HHCHHHCCCHHHH-----HHCCCH-HHHHHHHCCHHHHHHHHHH
T ss_conf 9998899999--7371210222234-----335887-9999997499999999999
No 3
>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Human coronavirus 229E [TaxId: 11137]}
Probab=2.62 E-value=1.6e+02 Score=4.08 Aligned_cols=80 Identities=14% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCCCCCCCC----------HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 99999147945533465220----------27855101478800399999999882089123999999850699985358
Q 000469 40 FVSEIYQKEPELLSGNDVLW----------TFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKVYELLQGKAFRSIGW 109 (1472)
Q Consensus 40 ~ia~~Y~~~P~~~~~~~~fW----------gFi~wa~~~~~~~~~~~afl~ML~sLa~g~~~A~~~~~lL~~~~~~~iSW 109 (1472)
.+|.+|+ +-+|..=| .|=+||++. ...+..+.-+|..|..+ .-++-
T Consensus 203 VVAwLYA-----Ailn~~~w~l~~~~~svedfN~WA~~N-----------------gft~~~~~~~~~~Laa~--TGV~V 258 (300)
T d1p9sa_ 203 VVAFLYA-----AILNGCTWWLKGEKLFVEHYNEWAQAN-----------------GFTAMNGEDAFSILAAK--TGVCV 258 (300)
T ss_dssp HHHHHHH-----HHHTTCCTTCCSCCCCHHHHHHHHTTT-----------------TBCCCCCGGGCSHHHHT--TTCCH
T ss_pred HHHHHHH-----HHHCCCCCEECCCEECHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHH--HCCCH
T ss_conf 9999999-----997589611155365488876778647-----------------96534411678888877--48779
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHH
Q ss_conf 9999999999999410-014689989999930499
Q 000469 110 RTLFDCLSIYDEKFKQ-SLQTGGALLPDFQEGDAK 143 (1472)
Q Consensus 110 ~~iF~~L~~Y~~~l~~-~~~~~~~~~~~l~~ee~~ 143 (1472)
.++..+++.-...+.- .+-.+.+...|++|+++.
T Consensus 259 ~~lL~aI~~L~~gf~g~~IlG~~~leDE~Tp~~V~ 293 (300)
T d1p9sa_ 259 ERLLHAIQVLNNGFGGKQILGYSSLNDEFSINEVV 293 (300)
T ss_dssp HHHHHHHHHHHTCCTTCCBTTBSSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHH
T ss_conf 99999999996077985341444444558999999
No 4
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=2.27 E-value=1.8e+02 Score=3.59 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 689999999861336789873024589960599999
Q 000469 986 LTHANFSTLRKEAQAILDLFIKDATQGSEPGKTLSL 1021 (1472)
Q Consensus 986 l~~~~~~ii~~~~~~LidvIc~DA~~G~~~~r~~Al 1021 (1472)
++.+--.++..|++.+++.+-.+ .+...+|+.+.+
T Consensus 2 ls~eC~~~V~~Y~~~ii~~L~~~-~~P~~IC~~lgl 36 (104)
T d1qdma1 2 VSQECKTIVSQYGQQILDLLLAE-TQPKKICSQVGL 36 (104)
T ss_dssp CCHHHHHHHHHTHHHHHHHHHTT-CCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHCC
T ss_conf 55899999999999999999954-999999999487
No 5
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.22 E-value=1.9e+02 Score=3.52 Aligned_cols=26 Identities=12% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 98820891239999998506999853
Q 000469 82 LSTLASSQEGASKVYELLQGKAFRSI 107 (1472)
Q Consensus 82 L~sLa~g~~~A~~~~~lL~~~~~~~i 107 (1472)
|+.+-.|+..|..+|+||.......|
T Consensus 37 L~~v~G~~~~A~~i~~f~~~~~~~~v 62 (62)
T d2a1ja1 37 LTSILGNAANAKQLYDFIHTSFAEVV 62 (62)
T ss_dssp HHHHHSCHHHHHHHHHHHHCCCCCCC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 97785958999999999810110129
No 6
>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.19 E-value=1.9e+02 Score=3.48 Aligned_cols=8 Identities=13% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 99986342
Q 000469 1393 VILIHFQD 1400 (1472)
Q Consensus 1393 ilw~Hl~~ 1400 (1472)
|||.|||+
T Consensus 76 iL~~hL~~ 83 (91)
T d1sxda_ 76 ILWSHLEL 83 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 7
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
Probab=2.16 E-value=1.8e+02 Score=3.67 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9999999861--3367898730245899605999999
Q 000469 988 HANFSTLRKE--AQAILDLFIKDATQGSEPGKTLSLY 1022 (1472)
Q Consensus 988 ~~~~~ii~~~--~~~LidvIc~DA~~G~~~~r~~Al~ 1022 (1472)
++|++.++.. +.+++.||--||| |||.-.+.-.+
T Consensus 6 ~~N~~~l~~~~~~~~i~aVVKAnAY-GhG~~~ia~~l 41 (237)
T d1vfsa2 6 RANVRALRARAPRSALMAVVKSNAY-GHGAVPCARAA 41 (237)
T ss_dssp HHHHHHHHTTSTTSEEEEECHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCC-CCCHHHHHHHH
T ss_conf 9999999976899829999813157-47799999999
No 8
>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.06 E-value=2.1e+02 Score=3.27 Aligned_cols=8 Identities=25% Similarity=0.604 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 99986342
Q 000469 1393 VILIHFQD 1400 (1472)
Q Consensus 1393 ilw~Hl~~ 1400 (1472)
|||.|||+
T Consensus 83 iL~~hL~~ 90 (97)
T d1sxea_ 83 ILLSHLHY 90 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 9
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.06 E-value=2.1e+02 Score=3.26 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999422999848889999
Q 000469 580 QLLYELCLDPLTCGPTMDLL 599 (1472)
Q Consensus 580 ~LL~~Lc~~p~TS~~tLr~L 599 (1472)
+|||.||.-|.|-.-.+..|
T Consensus 9 ~iIH~La~~p~~~sEL~~~l 28 (91)
T d2doaa1 9 RVLHLLALRPYRKAELLLRL 28 (91)
T ss_dssp HHHHHHHHSCEEHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHH
T ss_conf 99999982889889999998
No 10
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.98 E-value=2.2e+02 Score=3.15 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCC--------------CCCCHHHHHH
Q ss_conf 28999999994279--------------9998187766
Q 000469 509 PGVLIMQLLIDNIS--------------RPAPNITHLL 532 (1472)
Q Consensus 509 ~k~~IL~LLl~nL~--------------~~~PniAHlL 532 (1472)
+|..|..++...++ +|+|.+..||
T Consensus 38 Vr~LV~~L~~~~i~~EEF~~~Lq~~lns~pqP~lvPFL 75 (97)
T d2p6va1 38 VKELVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFL 75 (97)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHTTCCCCTTHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999838868999999999986599972239989
Done!