BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000470
(1472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 37/267 (13%)
Query: 1047 RGILVAHLQEHC-SAVNEIAISHDHS-FFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL 1104
RG L+A L E+ +++ A+S + + ++ SD +K+W+ +++ + S LTY
Sbjct: 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDC 110
Query: 1105 EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAI 1164
+ TM+ A V + DG I + V+H Y S++K + +
Sbjct: 111 SSTVTQITMIPNFDA-FAVSSKDGQIIVLKVNH----------YQQESEVKFLNCECIRK 159
Query: 1165 VTLVNYNTDNCASHMFMYS----------TQNCGIHLWDTRSNSNTWTLKAIPEEGYVSS 1214
+ L N+ + A M + T + ++D R+ ++ P G VSS
Sbjct: 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219
Query: 1215 LVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIE--KMCLFVPPPNAAVSTT 1272
+ + G++RG++ +WD+RF V + SW + PI ++C F
Sbjct: 220 ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY---------- 269
Query: 1273 ARPLIYVAAGCNE--VSLWNAENGSCH 1297
+ + V G ++ +++WN G C
Sbjct: 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQ 296
>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
pdb|3EB0|C Chain C, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
Length = 383
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSW-NWLYLSDFASFKPTYIPYXXXXXXXXXXX 108
+QL AV H GICH DIK +N+LV S N L L DF S K IP
Sbjct: 148 YQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAK-KLIP----------SE 196
Query: 109 TGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
+C RFY M A + PS+D++++GCV EL L P F
Sbjct: 197 PSVAXIC----SRFYRAPELMLGATE--YTPSIDLWSIGCVFGELILGKPLF 242
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 30/208 (14%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
E+ YL+ Q L DR+ F + + L FQ+L AVK H+ GI H D+K E
Sbjct: 86 ESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPE 145
Query: 73 NVLVTSWNW---LYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM 129
N+L S + + +SDF K T Y+APE
Sbjct: 146 NLLYYSLDEDSKIMISDFGLSK--------MEDPGSVLSTACGTPGYVAPE--------- 188
Query: 130 QVAQDAPLKPSMDIFAVGCVIAELFL--EVPFFELSHLLAYR---RGQYD-PSQHLEKIP 183
V P ++D +++G VIA + L PF++ + + + +Y+ S + + I
Sbjct: 189 -VLAQKPYSKAVDCWSIG-VIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDIS 246
Query: 184 DSGIRKMILHMIQLEPELRFSAESYLQN 211
DS + I H+++ +PE RF+ E LQ+
Sbjct: 247 DSA-KDFIRHLMEKDPEKRFTCEQALQH 273
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 30/208 (14%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
E+ YL+ Q L DR+ F + + L FQ+L AVK H+ GI H D+K E
Sbjct: 86 ESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPE 145
Query: 73 NVLVTSWNW---LYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM 129
N+L S + + +SDF K T Y+APE
Sbjct: 146 NLLYYSLDEDSKIMISDFGLSK--------MEDPGSVLSTACGTPGYVAPE--------- 188
Query: 130 QVAQDAPLKPSMDIFAVGCVIAELFL--EVPFFELSHLLAYR---RGQYD-PSQHLEKIP 183
V P ++D +++G VIA + L PF++ + + + +Y+ S + + I
Sbjct: 189 -VLAQKPYSKAVDCWSIG-VIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDIS 246
Query: 184 DSGIRKMILHMIQLEPELRFSAESYLQN 211
DS + I H+++ +PE RF+ E LQ+
Sbjct: 247 DSA-KDFIRHLMEKDPEKRFTCEQALQH 273
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 30/202 (14%)
Query: 20 YLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTS 78
YL+ Q L DR+ F + + L FQ+L AVK H+ GI H D+K EN+L S
Sbjct: 92 YLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYS 151
Query: 79 WNW---LYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDA 135
+ + +SDF K T Y+APE V
Sbjct: 152 LDEDSKIMISDFGLSK--------MEDPGSVLSTACGTPGYVAPE----------VLAQK 193
Query: 136 PLKPSMDIFAVGCVIAELFL--EVPFFELSHLLAYR---RGQYD-PSQHLEKIPDSGIRK 189
P ++D +++G VIA + L PF++ + + + +Y+ S + + I DS +
Sbjct: 194 PYSKAVDCWSIG-VIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSA-KD 251
Query: 190 MILHMIQLEPELRFSAESYLQN 211
I H+++ +PE RF+ E LQ+
Sbjct: 252 FIRHLMEKDPEKRFTCEQALQH 273
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 29/193 (15%)
Query: 28 NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW---LYL 84
L DR+ F + + L FQ+L AVK H+ GI H D+K EN+L S + + +
Sbjct: 101 GELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMI 160
Query: 85 SDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIF 144
SDF K T Y+APE V P ++D +
Sbjct: 161 SDFGLSK--------MEDPGSVLSTACGTPGYVAPE----------VLAQKPYSKAVDCW 202
Query: 145 AVGCVIAELFL--EVPFFELSHLLAYR---RGQYD-PSQHLEKIPDSGIRKMILHMIQLE 198
++G VIA + L PF++ + + + +Y+ S + + I DS + I H+++ +
Sbjct: 203 SIG-VIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSA-KDFIRHLMEKD 260
Query: 199 PELRFSAESYLQN 211
PE RF+ E LQ+
Sbjct: 261 PEKRFTCEQALQH 273
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 14 ETDKAAYLLRQYFFNSLRDRL------STPPFLSLVEKKWLAFQLLLAVKQCHEKGICHG 67
T+ L+ ++ N L+ + +TP L L K+ +QLL + CHE I H
Sbjct: 73 HTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHR 132
Query: 68 DIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGG 127
D+K +N+L+ L L DF + IP L Y AP+
Sbjct: 133 DLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVT-------LWYRAPD------- 178
Query: 128 EMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
+ S+DI++ GC++AE+ P F
Sbjct: 179 --VLMGSRTYSTSIDIWSCGCILAEMITGKPLF 209
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 6 CVHKKFWQETDKAAYLLRQYFFNSLRDRLSTPP--FLSLVEKKWLAFQLLLAVKQCHEKG 63
C KK W YL+ ++ +++ D L P V +K+L FQ++ + CH
Sbjct: 93 CKKKKRW-------YLVFEFVDHTILDDLELFPNGLDYQVVQKYL-FQIINGIGFCHSHN 144
Query: 64 ICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFY 123
I H DIK EN+LV+ + L DF + P Y APE
Sbjct: 145 IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATR-------WYRAPEL-- 195
Query: 124 EHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
+ D ++D++A+GC++ E+F+ P F
Sbjct: 196 -------LVGDVKYGKAVDVWAIGCLVTEMFMGEPLF 225
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
+QLL V CH+ I H D+K +N+L+ S L L+DF + IP
Sbjct: 126 YQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVT--- 182
Query: 110 GGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
L Y AP+ + S+DI+++GC+ AE+ P F
Sbjct: 183 ----LWYRAPD---------VLMGSKKYSTSVDIWSIGCIFAEMITGKPLF 220
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
+QLL V CH+ I H D+K +N+L+ S L L+DF + IP
Sbjct: 126 YQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVT--- 182
Query: 110 GGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
L Y AP+ + S+DI+++GC+ AE+ P F
Sbjct: 183 ----LWYRAPD---------VLMGSKKYSTSVDIWSIGCIFAEMITGKPLF 220
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 157 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 209
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 210 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 259
Query: 159 FF 160
F
Sbjct: 260 IF 261
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 155 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 207
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 208 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 257
Query: 159 FF 160
F
Sbjct: 258 IF 259
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 153 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 205
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 206 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 255
Query: 159 FF 160
F
Sbjct: 256 IF 257
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 198 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 250
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 251 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 300
Query: 159 FF 160
F
Sbjct: 301 IF 302
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 147 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 199
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 200 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 249
Query: 159 FF 160
F
Sbjct: 250 IF 251
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 124 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 176
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 177 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 226
Query: 159 FF 160
F
Sbjct: 227 IF 228
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFAS 89
L D L+ LS E + + LL AV H I H D+K EN+L+ + LSDF
Sbjct: 187 LFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFG- 245
Query: 90 FKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFA 145
F P + LC YLAPE E +D++A
Sbjct: 246 FSCHLEPGEKL-----------RELCGTPGYLAPEILKCSMDETHPGYGK----EVDLWA 290
Query: 146 VGCVIAELFL-EVPFFELSHLLAYR---RGQYDPSQHLEKIPDSGIRKMILHMIQLEPEL 201
G ++ L PF+ +L R GQY S S ++ +I ++Q++PE
Sbjct: 291 CGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEA 350
Query: 202 RFSAESYLQN 211
R +AE LQ+
Sbjct: 351 RLTAEQALQH 360
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 132 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 184
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 185 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 234
Query: 159 FF 160
F
Sbjct: 235 IF 236
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 47/202 (23%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXX 99
L V K QLL + CH++ + H D+K +N+L+ L ++DF + IP
Sbjct: 97 LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK 156
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
L Y AP+ + ++DI++VGC+ AE+ P
Sbjct: 157 YTHEVVT-------LWYRAPD---------VLMGSKKYSTTIDIWSVGCIFAEMVNGTPL 200
Query: 160 F----ELSHLLAYRR----------------GQYDPS----------QHLEKIPDSGIRK 189
F E L+ R +YDP+ L+ + +SGI
Sbjct: 201 FPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGI-D 259
Query: 190 MILHMIQLEPELRFSAESYLQN 211
++ M++L+P R +A+ L++
Sbjct: 260 LLSKMLKLDPNQRITAKQALEH 281
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 47/202 (23%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXX 99
L V K QLL + CH++ + H D+K +N+L+ L ++DF + IP
Sbjct: 97 LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK 156
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
L Y AP+ + ++DI++VGC+ AE+ P
Sbjct: 157 YTHEIVT-------LWYRAPD---------VLMGSKKYSTTIDIWSVGCIFAEMVNGTPL 200
Query: 160 F----ELSHLLAYRR----------------GQYDPS----------QHLEKIPDSGIRK 189
F E L+ R +YDP+ L+ + +SGI
Sbjct: 201 FPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGI-D 259
Query: 190 MILHMIQLEPELRFSAESYLQN 211
++ M++L+P R +A+ L++
Sbjct: 260 LLSKMLKLDPNQRITAKQALEH 281
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 28/139 (20%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
K + FQLL + H + H D+K +N+LVTS + L+DF + Y
Sbjct: 123 KDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR----IYSFQMALTS 178
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHL 165
T L Y APE +Q + P +D+++VGC+ AE+F P F
Sbjct: 179 VVVT----LWYRAPEVL------LQSSYATP----VDLWSVGCIFAEMFRRKPLF----- 219
Query: 166 LAYRRGQYDPSQHLEKIPD 184
RG D Q L KI D
Sbjct: 220 ----RGSSDVDQ-LGKILD 233
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 47/202 (23%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXX 99
L V K QLL + CH++ + H D+K +N+L+ L ++DF + IP
Sbjct: 97 LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK 156
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
L Y AP+ + ++DI++VGC+ AE+ P
Sbjct: 157 YTHEVVT-------LWYRAPD---------VLMGSKKYSTTIDIWSVGCIFAEMVNGAPL 200
Query: 160 F----ELSHLLAYRR----------------GQYDPS----------QHLEKIPDSGIRK 189
F E L+ R +YDP+ L+ + +SGI
Sbjct: 201 FPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGI-D 259
Query: 190 MILHMIQLEPELRFSAESYLQN 211
++ M++L+P R +A+ L++
Sbjct: 260 LLSKMLKLDPNQRITAKQALEH 281
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 171
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 172 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 221
Query: 159 FF 160
F
Sbjct: 222 IF 223
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 171
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 172 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 221
Query: 159 FF 160
F
Sbjct: 222 IF 223
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 171
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G + Y+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 172 -------QLVRGEPNVSYIC-SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 221
Query: 159 FF 160
F
Sbjct: 222 IF 223
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 28/139 (20%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
K + FQLL + H + H D+K +N+LVTS + L+DF + Y
Sbjct: 123 KDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR----IYSFQMALTS 178
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHL 165
T L Y APE +Q + P +D+++VGC+ AE+F P F
Sbjct: 179 VVVT----LWYRAPEVL------LQSSYATP----VDLWSVGCIFAEMFRRKPLF----- 219
Query: 166 LAYRRGQYDPSQHLEKIPD 184
RG D Q L KI D
Sbjct: 220 ----RGSSDVDQ-LGKILD 233
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 31/186 (16%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q + V+ H + H D+K N+ + + + DF T I +
Sbjct: 143 EARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGL--ATKIEFDGERK- 199
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V DI+++GC++ L + P
Sbjct: 200 --------KTLCGTPNYIAPEVLCKKGHSFEV----------DIWSLGCILYTLLVGKPP 241
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELR--FSAESYLQNYA 213
FE S L + ++ +Y +H+ + + IR+M+ L P + + E + YA
Sbjct: 242 FETSCLKETYIRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTSGYA 301
Query: 214 AVVFPT 219
+ PT
Sbjct: 302 PMRLPT 307
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 28/139 (20%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
K + FQLL + H + H D+K +N+LVTS + L+DF + Y
Sbjct: 123 KDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR----IYSFQMALTS 178
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHL 165
T L Y APE +Q + P +D+++VGC+ AE+F P F
Sbjct: 179 VVVT----LWYRAPEVL------LQSSYATP----VDLWSVGCIFAEMFRRKPLF----- 219
Query: 166 LAYRRGQYDPSQHLEKIPD 184
RG D Q L KI D
Sbjct: 220 ----RGSSDVDQ-LGKILD 233
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 31/186 (16%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q + V+ H + H D+K N+ + + + DF T I +
Sbjct: 143 EARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGL--ATKIEFDGERK- 199
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V DI+++GC++ L + P
Sbjct: 200 --------KXLCGTPNYIAPEVLCKKGHSFEV----------DIWSLGCILYTLLVGKPP 241
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELR--FSAESYLQNYA 213
FE S L + ++ +Y +H+ + + IR+M+ L P + + E + YA
Sbjct: 242 FETSCLKETYIRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTSGYA 301
Query: 214 AVVFPT 219
+ PT
Sbjct: 302 PMRLPT 307
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 31/186 (16%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q + V+ H + H D+K N+ + + + DF T I +
Sbjct: 143 EARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGL--ATKIEFDGERK- 199
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V DI+++GC++ L + P
Sbjct: 200 --------KDLCGTPNYIAPEVLCKKGHSFEV----------DIWSLGCILYTLLVGKPP 241
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELR--FSAESYLQNYA 213
FE S L + ++ +Y +H+ + + IR+M+ L P + + E + YA
Sbjct: 242 FETSCLKETYIRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTSGYA 301
Query: 214 AVVFPT 219
+ PT
Sbjct: 302 PMRLPT 307
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 28/131 (21%)
Query: 35 STPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-----S 89
+ PP L K L Q L + H I H D+K EN+LVTS + L+DF S
Sbjct: 104 APPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS 163
Query: 90 FKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCV 149
++ P L Y APE +Q P+ D+++VGC+
Sbjct: 164 YQMALFPVVVT-------------LWYRAPEVL------LQSTYATPV----DMWSVGCI 200
Query: 150 IAELFLEVPFF 160
AE+F P F
Sbjct: 201 FAEMFRRKPLF 211
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 35 STPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTY 94
+ PP L K L Q L + H I H D+K EN+LVTS + L+DF +
Sbjct: 104 APPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR--- 160
Query: 95 IPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y T L Y APE +Q P+ D+++VGC+ AE+F
Sbjct: 161 -IYSYQMALAPVVVT----LWYRAPEVL------LQSTYATPV----DMWSVGCIFAEMF 205
Query: 155 LEVPFF 160
P F
Sbjct: 206 RRKPLF 211
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 28/131 (21%)
Query: 35 STPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-----S 89
+ PP L K L Q L + H I H D+K EN+LVTS + L+DF S
Sbjct: 112 APPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS 171
Query: 90 FKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCV 149
++ P L Y APE +Q P+ D+++VGC+
Sbjct: 172 YQMALTPVVVT-------------LWYRAPEVL------LQSTYATPV----DMWSVGCI 208
Query: 150 IAELFLEVPFF 160
AE+F P F
Sbjct: 209 FAEMFRRKPLF 219
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
K + +Q L AV CH+ H D+K EN+L+T + + L DF + P
Sbjct: 105 KSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVA 164
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
Y +PE + D P +D++A+GCV AEL VP +
Sbjct: 165 TR-------WYRSPE---------LLVGDTQYGPPVDVWAIGCVFAELLSGVPLW 203
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 31/186 (16%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q + V+ H + H D+K N+ + + + DF T I +
Sbjct: 127 EARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGL--ATKIEFDGERK- 183
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V DI+++GC++ L + P
Sbjct: 184 --------KDLCGTPNYIAPEVLCKKGHSFEV----------DIWSLGCILYTLLVGKPP 225
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELR--FSAESYLQNYA 213
FE S L + ++ +Y +H+ + + IR+M+ L P + + E + YA
Sbjct: 226 FETSCLKETYIRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTSGYA 285
Query: 214 AVVFPT 219
+ PT
Sbjct: 286 PMRLPT 291
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 35 STPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTY 94
+ PP L K L Q L + H I H D+K EN+LVTS + L+DF +
Sbjct: 104 APPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR--- 160
Query: 95 IPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y T L Y APE +Q P+ D+++VGC+ AE+F
Sbjct: 161 -IYSYQMALDPVVVT----LWYRAPEVL------LQSTYATPV----DMWSVGCIFAEMF 205
Query: 155 LEVPFF 160
P F
Sbjct: 206 RRKPLF 211
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 163
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 272 KEIVQKLQ 279
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q++L + H + H D+K N+ + + + DF T + Y
Sbjct: 122 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL--ATKVEYDGERK- 178
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V D++++GC++ L + P
Sbjct: 179 --------KTLCGTPNYIAPEVLSKKGHSFEV----------DVWSIGCIMYTLLVGKPP 220
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
FE S L L ++ +Y +H+ + S I+K M+Q +P R + L +
Sbjct: 221 FETSCLKETYLRIKKNEYSIPKHINPVAASLIQK----MLQTDPTARPTINELLND 272
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 163
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 272 KEIVQKLQ 279
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 163
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 272 KEIVQKLQ 279
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 153 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 205
Query: 99 XXXXXXXXXXTGGKRLC---YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL 155
+C Y APE + A D S+D+++ GCV+AEL L
Sbjct: 206 ----QLVRGEPNVSXICSRYYRAPELIFG-------ATD--YTSSIDVWSAGCVLAELLL 252
Query: 156 EVPFF 160
P F
Sbjct: 253 GQPIF 257
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q++L + H + H D+K N+ + + + DF T + Y
Sbjct: 118 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL--ATKVEYDGERK- 174
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V D++++GC++ L + P
Sbjct: 175 --------KTLCGTPNYIAPEVLSKKGHSFEV----------DVWSIGCIMYTLLVGKPP 216
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
FE S L L ++ +Y +H+ + S I+K M+Q +P R + L +
Sbjct: 217 FETSCLKETYLRIKKNEYSIPKHINPVAASLIQK----MLQTDPTARPTINELLND 268
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q++L + H + H D+K N+ + + + DF T + Y
Sbjct: 118 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL--ATKVEYDGERK- 174
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V D++++GC++ L + P
Sbjct: 175 --------KTLCGTPNYIAPEVLSKKGHSFEV----------DVWSIGCIMYTLLVGKPP 216
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
FE S L L ++ +Y +H+ + S I+K M+Q +P R + L +
Sbjct: 217 FETSCLKETYLRIKKNEYSIPKHINPVAASLIQK----MLQTDPTARPTINELLND 268
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L+ +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TR-------------YYRAPEVILGMG----------YKENVDIWSVGCIMGEMI 219
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 111
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 156
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 157 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 213 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 264
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 265 KEIVQKLQ 272
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 115
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 160
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 161 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 217 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 269 KEIVQKLQ 276
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 120
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 165
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 166 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 222 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 274 KEIVQKLQ 281
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 114
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 159
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 160 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 216 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 267
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 268 KEIVQKLQ 275
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q++L + H + H D+K N+ + + + DF T + Y
Sbjct: 140 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL--ATKVEYDGERK- 196
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V D++++GC++ L + P
Sbjct: 197 --------KVLCGTPNYIAPEVLSKKGHSFEV----------DVWSIGCIMYTLLVGKPP 238
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
FE S L L ++ +Y +H+ + S I+K M+Q +P R + L +
Sbjct: 239 FETSCLKETYLRIKKNEYSIPKHINPVAASLIQK----MLQTDPTARPTINELLND 290
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCEN 73
E Y++++ L +ST LS ++ +Q L AVK H + H D+K N
Sbjct: 84 ENFNEVYIIQELMQTDLHRVISTQ-MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSN 142
Query: 74 VLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKR-LCYLAPERFYEHGGEMQVA 132
+L+ S L + DF + TG + + R+Y M +
Sbjct: 143 LLINSNCDLKVCDFGLAR-----IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTS 197
Query: 133 QDAPLKPSMDIFAVGCVIAELFLEVPFF 160
A +MD+++ GC++AELFL P F
Sbjct: 198 --AKYSRAMDVWSCGCILAELFLRRPIF 223
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 131 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 183
Query: 99 XXXXXXXXXXTGGKRLC---YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL 155
+C Y APE + A D S+D+++ GCV+AEL L
Sbjct: 184 ----QLVRGEPNVSXICSRYYRAPELIFG-------ATD--YTSSIDVWSAGCVLAELLL 230
Query: 156 EVPFF 160
P F
Sbjct: 231 GQPIF 235
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q++L + H + H D+K N+ + + + DF T + Y
Sbjct: 142 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL--ATKVEYDGERK- 198
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V D++++GC++ L + P
Sbjct: 199 --------KVLCGTPNYIAPEVLSKKGHSFEV----------DVWSIGCIMYTLLVGKPP 240
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
FE S L L ++ +Y +H+ + S I+K M+Q +P R + L +
Sbjct: 241 FETSCLKETYLRIKKNEYSIPKHINPVAASLIQK----MLQTDPTARPTINELLND 292
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 127 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 179
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 180 --------QLVRGEPNVSXICSRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 229
Query: 159 FF 160
F
Sbjct: 230 IF 231
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 138 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 190
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 191 --------QLVRGEPNVSXICSRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 240
Query: 159 FF 160
F
Sbjct: 241 IF 242
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 132
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 177
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 178 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 234 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 285
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 286 KEIVQKLQ 293
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 115
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 160
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 161 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 217 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 269 KEIVQKLQ 276
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 131 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 183
Query: 99 XXXXXXXXXXTGGKRLC---YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL 155
+C Y APE + A D S+D+++ GCV+AEL L
Sbjct: 184 ----QLVRGEPNVSXICSRYYRAPELIFG-------ATD--YTSSIDVWSAGCVLAELLL 230
Query: 156 EVPFF 160
P F
Sbjct: 231 GQPIF 235
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 38/190 (20%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
W Q+ LA+K H++ I H DIK +N+ +T + L DF
Sbjct: 130 WFV-QICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFG------------IARVLN 176
Query: 107 XXTGGKRLC-----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
R C YL+PE + ++ P DI+A+GCV+ EL FE
Sbjct: 177 STVELARACIGTPYYLSPE----------ICENKPYNNKSDIWALGCVLYELCTLKHAFE 226
Query: 162 LSHL----LAYRRGQYDP-SQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN-YAAV 215
+ L G + P S H +R ++ + + P R S S L+ + A
Sbjct: 227 AGSMKNLVLKIISGSFPPVSLHY----SYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAK 282
Query: 216 VFPTYFSPFL 225
+ SP L
Sbjct: 283 RIEKFLSPQL 292
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 121
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 166
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 167 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 223 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 275 KEIVQKLQ 282
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 116
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 161
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 162 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 218 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 269
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 270 KEIVQKLQ 277
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+D + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
EN+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 121
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 166
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 167 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 223 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 275 KEIVQKLQ 282
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 171
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 172 --------QLVRGEPNVSXICSRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 221
Query: 159 FF 160
F
Sbjct: 222 IF 223
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 121
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSD-------------PVSAVHFNRD- 166
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 167 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 223 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 275 KEIVQKLQ 282
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 171
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
+C R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 172 ----QLVRGEPNVSXIC----SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 221
Query: 159 FF 160
F
Sbjct: 222 IF 223
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 171
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
+C R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 172 ----QLVRGEPNVSXIC----SRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 221
Query: 159 FF 160
F
Sbjct: 222 IF 223
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 171
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 172 --------QLVRGEPNVSXICSRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 221
Query: 159 FF 160
F
Sbjct: 222 IF 223
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 123 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 175
Query: 99 XXXXXXXXXXTGGKRLC---YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL 155
+C Y APE + A D S+D+++ GCV+AEL L
Sbjct: 176 ----QLVRGEPNVSXICSRYYRAPELIFG-------ATD--YTSSIDVWSAGCVLAELLL 222
Query: 156 EVPFF 160
P F
Sbjct: 223 GQPIF 227
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L ++ K +QL ++ H GICH DIK +N+L+ L L DF S K
Sbjct: 120 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK------- 172
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158
G+ R+Y + A D S+D+++ GCV+AEL L P
Sbjct: 173 --------QLVRGEPNVSXICSRYYRAPELIFGATD--YTSSIDVWSAGCVLAELLLGQP 222
Query: 159 FF 160
F
Sbjct: 223 IF 224
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCEN 73
E Y++++ L +ST LS ++ +Q L AVK H + H D+K N
Sbjct: 84 ENFNEVYIIQELMQTDLHRVISTQ-MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSN 142
Query: 74 VLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKR-LCYLAPERFYEHGGEMQVA 132
+L+ S L + DF + TG + + R+Y M +
Sbjct: 143 LLINSNCDLKVCDFGLAR-----IIDESAADNSEPTGQQSGMTEXVATRWYRAPEVMLTS 197
Query: 133 QDAPLKPSMDIFAVGCVIAELFLEVPFF 160
A +MD+++ GC++AELFL P F
Sbjct: 198 --AKYSRAMDVWSCGCILAELFLRRPIF 223
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCEN 73
E Y++++ L +ST LS ++ +Q L AVK H + H D+K N
Sbjct: 84 ENFNEVYIIQELMQTDLHRVISTQ-MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSN 142
Query: 74 VLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKR-LCYLAPERFYEHGGEMQVA 132
+L+ S L + DF + TG + + R+Y M +
Sbjct: 143 LLINSNCDLKVCDFGLAR-----IIDESAADNSEPTGQQSGMTEYVATRWYRAPEVMLTS 197
Query: 133 QDAPLKPSMDIFAVGCVIAELFLEVPFF 160
A +MD+++ GC++AELFL P F
Sbjct: 198 --AKYSRAMDVWSCGCILAELFLRRPIF 223
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 139
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 140 NPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSD-------------PVSAVHFNRD- 184
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 185 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 241 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 292
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 293 KEIVQKLQ 300
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 1031 PSFVRTSSIPDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR-- 1088
PS T S P + +P L L H AV+ + S + + S+S D +K+W +
Sbjct: 21 PSSSATQSKP-TPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 79
Query: 1089 KLEKDIS 1095
K EK IS
Sbjct: 80 KFEKTIS 86
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 137
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V + L + +S V+ V++N D
Sbjct: 138 NPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSD-------------PVSAVHFNRD- 182
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 183 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 239 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 291 KEIVQKLQ 298
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 1031 PSFVRTSSIPDSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR-- 1088
PS T S P + +P L L H AV+ + S + + S+S D +K+W +
Sbjct: 19 PSSSATQSKP-TPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 77
Query: 1089 KLEKDIS 1095
K EK IS
Sbjct: 78 KFEKTIS 84
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E ++ Q++L + H + H D+K N+ + + + DF T + Y
Sbjct: 116 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL--ATKVEYDGERK- 172
Query: 104 XXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
K LC Y+APE + G +V D++++GC++ L + P
Sbjct: 173 --------KVLCGTPNYIAPEVLSKKGHSFEV----------DVWSIGCIMYTLLVGKPP 214
Query: 160 FELSHL----LAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
FE S L L ++ +Y +H+ + S I+K M+Q +P R + L +
Sbjct: 215 FETSCLKETYLRIKKNEYSIPKHINPVAASLIQK----MLQTDPTARPTINELLND 266
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 8/245 (3%)
Query: 432 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 491
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 172 PXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQL---L 228
Query: 492 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEAGVLDK 551
P D + + P L +D VR A +L + + + L K
Sbjct: 229 PQEDLEAL---VXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXK 285
Query: 552 LSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDIG 611
++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 286 DCEAEVRAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQ--HVKSALASVIX 343
Query: 612 NLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQ 671
L G+ + + LLP+ A L D ++R + V +G R + + LLP I +
Sbjct: 344 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 403
Query: 672 ALSDA 676
DA
Sbjct: 404 LAEDA 408
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 12/247 (4%)
Query: 432 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 491
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 234
Query: 492 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEA--GVL 549
P D + ++P L +D VR A +L A G + L A ++
Sbjct: 235 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQ-KAVGPEITKTDLVPAFQNLM 290
Query: 550 DKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQD 609
A ++ ++S++ + L+AD + + + I ++ELV Q ++ AL
Sbjct: 291 KDCEAEVRA-AASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQ--HVKSALASV 347
Query: 610 IGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYI 669
I L G+ + + LLP+ A L D ++R + V +G R + + LLP I
Sbjct: 348 IMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 407
Query: 670 EQALSDA 676
+ DA
Sbjct: 408 VELAEDA 414
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 12/247 (4%)
Query: 432 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 491
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 234
Query: 492 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEA--GVL 549
P D + ++P L +D VR A +L A G + L A ++
Sbjct: 235 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQ-KAVGPEITKTDLVPAFQNLM 290
Query: 550 DKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQD 609
A ++ ++S++ + L+AD + + + I ++ELV Q ++ AL
Sbjct: 291 KDCEAEVRA-AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASV 347
Query: 610 IGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYI 669
I L G+ + + LLP+ A L D ++R + V +G R + + LLP I
Sbjct: 348 IMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 407
Query: 670 EQALSDA 676
+ DA
Sbjct: 408 VELAEDA 414
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 10/246 (4%)
Query: 432 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 491
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 235
Query: 492 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEA-GVLD 550
P D + ++P L +D VR A +L A G + L A L
Sbjct: 236 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQ-KAVGPEITKTDLVPAFQNLM 291
Query: 551 KLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDI 610
K ++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 292 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVI 349
Query: 611 GNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIE 670
L G+ + + LLP+ A L D ++R + V +G R + + LLP I
Sbjct: 350 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 409
Query: 671 QALSDA 676
+ DA
Sbjct: 410 ELAEDA 415
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 31/77 (40%)
Query: 599 TPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGE 658
TP +RRA +G ++P+ +D + +R + V + + +
Sbjct: 178 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 237
Query: 659 RSVEEYLLPYIEQALSD 675
+E ++P + QA D
Sbjct: 238 EDLEALVMPTLRQAAED 254
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 12/247 (4%)
Query: 432 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 491
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 235
Query: 492 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEA--GVL 549
P D + ++P L +D VR A +L A G + L A ++
Sbjct: 236 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQ-KAVGPEITKTDLVPAFQNLM 291
Query: 550 DKLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQD 609
A ++ ++S++ + L+AD + + + I ++ELV Q ++ AL
Sbjct: 292 KDCEAEVRA-AASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQ--HVKSALASV 348
Query: 610 IGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYI 669
I L G+ + + LLP+ A L D ++R + V +G R + + LLP I
Sbjct: 349 IMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 408
Query: 670 EQALSDA 676
+ DA
Sbjct: 409 VELAEDA 415
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 31/77 (40%)
Query: 599 TPSIRRALLQDIGNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGE 658
TP +RRA +G ++P+ +D + +R + V + + +
Sbjct: 178 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 237
Query: 659 RSVEEYLLPYIEQALSD 675
+E ++P + QA D
Sbjct: 238 EDLEALVMPTLRQAAED 254
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TR-------------YYRAPEVILGMG----------YKENVDIWSVGCIMGEM 218
>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major
pdb|3E3P|B Chain B, Glycogen Synthase Kinase From Leishmania Major
Length = 360
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 30/139 (21%)
Query: 28 NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCH--EKGICHGDIKCENVLVTSWNW-LYL 84
N R +++ PP L K FQL+ ++ H +CH DIK NVLV + L L
Sbjct: 118 NYYRRQVAPPPILI----KVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKL 173
Query: 85 SDFASFKPTYIPYXXXXXXXXXXXTGGKRLC---YLAPERFYEHGGEMQVAQDAPLKPSM 141
DF S K +C Y APE + G + ++
Sbjct: 174 CDFGSAK-----------KLSPSEPNVAYICSRYYRAPELIF--GNQHYTT-------AV 213
Query: 142 DIFAVGCVIAELFLEVPFF 160
DI++VGC+ AE+ L P F
Sbjct: 214 DIWSVGCIFAEMMLGEPIF 232
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXXXXXXT 109
Q+L +K H+ I H DIK +NVL+ +++ L +SDF + K T
Sbjct: 130 QILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSK-------RLAGINPCTET 182
Query: 110 GGKRLCYLAPERFYEHGGEMQVAQDAP--LKPSMDIFAVGCVIAELFL-EVPFFELSHLL 166
L Y+APE + P + DI+++GC I E+ + PF+EL
Sbjct: 183 FTGTLQYMAPE----------IIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQ 232
Query: 167 A--YRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYL 209
A ++ G + + + + + IL + +P+ R A L
Sbjct: 233 AAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLL 277
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 10/246 (4%)
Query: 432 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 491
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 170 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 226
Query: 492 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEA-GVLD 550
P D + ++P L +D VR A +L A G + L A L
Sbjct: 227 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQ-KAVGPEITKTDLVPAFQNLM 282
Query: 551 KLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDI 610
K ++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 283 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVI 340
Query: 611 GNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIE 670
L G+ + + LLP+ A L D ++R + V +G R + + LLP I
Sbjct: 341 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 400
Query: 671 QALSDA 676
+ DA
Sbjct: 401 ELAEDA 406
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 10/246 (4%)
Query: 432 PHYRRAAILLLKSSSLFIDDEDRLQRVLPHVIAMLSDPAAIVRCAALETLCDILPLVRNF 491
P RRAA L + ++ ++ ++P + SD VR A+E +I L
Sbjct: 172 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL---L 228
Query: 492 PPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHSIRLSEA-GVLD 550
P D + ++P L +D VR A +L A G + L A L
Sbjct: 229 PQEDLEAL---VMPTLRQAAEDKSWRVRYMVADKFTELQ-KAVGPEITKTDLVPAFQNLM 284
Query: 551 KLSAPHKSPSSSNETSVQLQRLNADVQLSQLRKSIAEVVQELVMGPKQTPSIRRALLQDI 610
K ++S++ + L+AD + + + I ++ELV Q ++ AL I
Sbjct: 285 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVI 342
Query: 611 GNLCSFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIE 670
L G+ + + LLP+ A L D ++R + V +G R + + LLP I
Sbjct: 343 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 402
Query: 671 QALSDA 676
+ DA
Sbjct: 403 ELAEDA 408
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 218
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TR-------------YYRAPEVILGMG----------YKENVDIWSVGCIMGEMI 219
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 123 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMT--PYVV 180
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 181 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 211
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V +G+ K V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK------------TGMC--LKTLPAHSDPVSAVHFNRD- 163
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNMVYIWNLQT 271
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 1045 RPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR--KLEKDIS 1095
+P L+ L H AV+ + S + + S+S D +K+W + K EK IS
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEMI 219
>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
Length = 355
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 218
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 28/112 (25%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDF-----ASFKPTYIPYXXXX 101
+L +Q+L +K H GI H D+K N++V S L + DF AS PY
Sbjct: 128 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTASTNFMMTPYVVTR 187
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ EL
Sbjct: 188 Y-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEL 216
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+L +Q+L +K H GI H D+K N++V S L + DF +
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR--------------- 174
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
T G + PE + +V K ++DI++VGC++ E+
Sbjct: 175 --TAGTSFM-MTPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 219
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXXXXXXT 109
Q+L +K H+ I H DIK +NVL+ +++ L +SDF + K T
Sbjct: 116 QILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSK-------RLAGINPCTET 168
Query: 110 GGKRLCYLAPERFYEHGGEMQVAQDAP--LKPSMDIFAVGCVIAELFL-EVPFFELSHLL 166
L Y+APE + P + DI+++GC I E+ + PF+EL
Sbjct: 169 FTGTLQYMAPE----------IIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQ 218
Query: 167 A--YRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYL 209
A ++ G + + + + + IL + +P+ R A L
Sbjct: 219 AAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLL 263
>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor,
Sr- 3451
Length = 353
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 218
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 15 TDKAAYLLRQYFFNSLRDRLST-PPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCEN 73
T+K+ L+ +Y L+ L +++ K FQLL + CH + + H D+K +N
Sbjct: 71 TEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQN 130
Query: 74 VLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQ 133
+L+ L L+DF + IP L Y P+ +
Sbjct: 131 LLINERGELKLADFGLARAKSIPTKTYDNEVVT-------LWYRPPD---------ILLG 174
Query: 134 DAPLKPSMDIFAVGCVIAELFLEVPFF 160
+D++ VGC+ E+ P F
Sbjct: 175 STDYSTQIDMWGVGCIFYEMATGRPLF 201
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 20 YLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79
+L+ +Y N L+ + P +S+ K +QL+ V CH + H D+K +N+L++
Sbjct: 109 HLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVS 168
Query: 80 NW-----LYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQD 134
+ L + DF + IP L Y PE G +
Sbjct: 169 DASETPVLKIGDFGLARAFGIPIRQFTHEIIT-------LWYRPPEILL---GSRHYST- 217
Query: 135 APLKPSMDIFAVGCVIAELFLEVPFF 160
S+DI+++ C+ AE+ ++ P F
Sbjct: 218 -----SVDIWSIACIWAEMLMKTPLF 238
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+L +Q+L +K H GI H D+K N++V S L + DF +
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR--------------- 174
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
T G + PE + +V K ++DI++VGC++ E+
Sbjct: 175 --TAGTSFM-MEPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEMI 219
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 49/185 (26%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 168 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 225
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159
Y APE G K ++DI++VGC++ E+
Sbjct: 226 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM------ 256
Query: 160 FELSHLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN---YAAVV 216
+ H + + Y K+ + M +L+P +R +Y++N YA +
Sbjct: 257 --VRHKILFPGRDY--IDQWNKVIEQLGTPCPEFMKKLQPTVR----NYVENRPKYAGLT 308
Query: 217 FPTYF 221
FP F
Sbjct: 309 FPKLF 313
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEMI 219
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 53 LLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGK 112
L ++ H+ I H D+K N+L+ L L+DF K P
Sbjct: 122 LQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTR----- 176
Query: 113 RLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
Y APE + G M +D++AVGC++AEL L VPF
Sbjct: 177 --WYRAPELLF--GARMYGV-------GVDMWAVGCILAELLLRVPFL 213
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L+ +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VG ++ E+
Sbjct: 188 TR-------------YYRAPEVILGMG----------YKENVDIWSVGVIMGEMI 219
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 131 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 188
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 189 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEMI 220
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEMI 219
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWD--SRKLEKDISFRSRLTYHLEGSRALCTMM 1114
H ++++A S D + VSASDD T+K+WD S K K + S + C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------CCNF 118
Query: 1115 LRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDN 1174
S +V G+ D + ++ V +G+ K V+ V++N D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVK------------TGMC--LKTLPAHSDPVSAVHFNRD- 163
Query: 1175 CASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVT-GPCGNWFVSGSSRGVL 1233
+ + S+ + +WDT S TL I ++ S V P G + ++ + L
Sbjct: 164 --GSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTARPLIYVAAGCNEVSLWNAEN 1293
LWD + ++ + EK C+F A S T I + N V +WN +
Sbjct: 220 KLWDYSKGKCLKTYTGHKN---EKYCIF-----ANFSVTGGKWIVSGSEDNMVYIWNLQT 271
Query: 1294 GSCHQVLR 1301
Q L+
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 1045 RPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR--KLEKDIS 1095
+P L+ L H AV+ + S + + S+S D +K+W + K EK IS
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 73 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 131
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
EN+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 132 PENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 183
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 184 -------------TAVDIWSLGCIFAEM 198
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 24/119 (20%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
K +QLL ++ H GICH DIK +N+L+ + L L DF S K
Sbjct: 144 KLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAK-----------IL 192
Query: 105 XXXXTGGKRLC---YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
+C Y APE + G + +DI++ GCV+AEL P F
Sbjct: 193 IAGEPNVSXICSRYYRAPELIF---GATNYTTN------IDIWSTGCVMAELMQGQPLF 242
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 128 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEY 187
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 188 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 234
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 74 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 132
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
EN+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 133 PENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 184
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 185 -------------TAVDIWSLGCIFAEM 199
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+L +Q+L +K H GI H D+K N++V S L + DF + +
Sbjct: 132 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMVPFVVTR 191
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VGC++ E+
Sbjct: 192 Y--------YRAPEVILGMG----------YKENVDIWSVGCIMGEMI 221
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 148 YFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEX 207
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 208 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 254
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+D + + + K +L FQLL + CH + H D+K
Sbjct: 74 HTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 132
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 133 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 184
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 185 -------------TAVDIWSLGCIFAEM 199
>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + + L + DF + +
Sbjct: 130 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEY 189
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 190 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 236
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 168 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 225
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 226 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 256
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+D + + + K +L FQLL + CH + H D+K
Sbjct: 75 HTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 133
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 134 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 185
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 186 -------------TAVDIWSLGCIFAEM 200
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 131 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 188
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 189 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 219
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 218
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 32/225 (14%)
Query: 14 ETDKAAYLLRQYF-FNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET +++ +Y L D + + LS E + + Q++ AV H +G H D+K E
Sbjct: 78 ETANKIFMVLEYCPGGELFDYIISQDRLSEEETRVVFRQIVSAVAYVHSQGYAHRDLKPE 137
Query: 73 NVLVTSWNWLYLSDFA-SFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N+L ++ L L DF KP T L Y APE +
Sbjct: 138 NLLFDEYHKLKLIDFGLCAKPK-------GNKDYHLQTCCGSLAYAAPEL---------I 181
Query: 132 AQDAPLKPSMDIFAVGCVIAELFLE-VPFFELSHLLAYR---RGQYDPSQHLEKIPDSGI 187
+ L D++++G ++ L +PF + + + Y+ RG+YD + L P S +
Sbjct: 182 QGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMALYKKIMRGKYDVPKWLS--PSSIL 239
Query: 188 RKMILHMIQLEPELRFSAESYL------QNYAAVVFPTYFSPFLH 226
++ M+Q++P+ R S ++ L Q+Y V +PF+H
Sbjct: 240 --LLQQMLQVDPKKRISMKNLLNHPWIMQDYNYPVEWQSKNPFIH 282
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L+ +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
Y APE G K ++DI++VG ++ E+
Sbjct: 188 TR-------------YYRAPEVILGMG----------YKENVDIWSVGVIMGEMI 219
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 131 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 188
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 189 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 219
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 187
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 188 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 218
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 129 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 186
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 187 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 217
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 124 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 181
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 182 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 212
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 124 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 181
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 182 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 212
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTS---WNWLYLSDFASFKPTYIPYXXXXXXXXXX 107
Q+L ++ CH GI H ++K EN+L+ S + L+DF I
Sbjct: 136 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFG----LAIEVNDSEAWHGFA 191
Query: 108 XTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHL 165
T G YL+PE V + P +DI+A G ++ L + P F E H
Sbjct: 192 GTPG----YLSPE----------VLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR 237
Query: 166 L--AYRRGQYD-PSQHLEKI-PDSGIRKMILHMIQLEPELRFSAESYLQ 210
L + G YD PS + + P++ + +I M+ + P+ R +A+ L+
Sbjct: 238 LYAQIKAGAYDYPSPEWDTVTPEA--KSLIDSMLTVNPKKRITADQALK 284
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 123 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 180
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++DI++VGC++ E+
Sbjct: 181 TRY-------------YRAPEVILGMG----------YKENVDIWSVGCIMGEM 211
>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
pdb|3LL6|B Chain B, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
Length = 337
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 16/162 (9%)
Query: 50 FQLLLAVKQCHEKG--ICHGDIKCENVLVTSWNWLYLSDFA-----SFKPTYIPYXXXXX 102
+Q AV+ H + I H D+K EN+L+++ + L DF S P Y
Sbjct: 143 YQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRA 202
Query: 103 XXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFEL 162
T Y PE + + + P+ DI+A+GC++ L FE
Sbjct: 203 LVEEEITRNTTPMYRTPEI-------IDLYSNFPIGEKQDIWALGCILYLLCFRQHPFED 255
Query: 163 SHLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFS 204
L G+Y H + + +I M+Q+ PE R S
Sbjct: 256 GAKLRIVNGKYSIPPHDTQY--TVFHSLIRAMLQVNPEERLS 295
>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2
Length = 364
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 132 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEY 191
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 192 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 238
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 128 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEY 187
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 188 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 234
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 132 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEY 191
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 192 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 238
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 128 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEY 187
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 188 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 234
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+L +Q+L +K H GI H D+K N++V S L + DF +
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR--------------- 174
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
T G + PE + +V K ++D+++VGC++ E+
Sbjct: 175 --TAGTSFM-MEPEVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEM 218
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 148 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEY 207
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 208 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 254
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYH 1103
W G L+ L H S+V +A S D SASDD TVK+W+ ++ LT H
Sbjct: 207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGH 261
Query: 1104 LEGSRALCTMMLRHSAQVVVGACD 1127
S ++ + R Q + A D
Sbjct: 262 ---SSSVNGVAFRPDGQTIASASD 282
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+VN +A D SASDD TVK+W+
Sbjct: 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 453 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 494 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 412 WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 43 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SASDD TVK+W+
Sbjct: 289 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G + L H S+V +A S D SASDD TVK+W+
Sbjct: 330 WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
L+ H S+V +A S D SASDD TVK+W+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W G L+ L H S+V +A S D SAS D TVK+W+
Sbjct: 535 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
FQLL + CH + H D+K EN+L+ + + L+DF + +P
Sbjct: 111 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT--- 167
Query: 110 GGKRLCYLAPE-----RFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
L Y APE ++Y ++DI+++GC+ AE+
Sbjct: 168 ----LWYRAPEILLGCKYYS--------------TAVDIWSLGCIFAEM 198
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
K FQLL + CH + + H D+K +N+L+ L L+DF + IP
Sbjct: 104 KSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVV 163
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
L Y P+ + G ++ S+D+++ GC+ AEL
Sbjct: 164 T-------LWYRPPDVLF--GAKLYST-------SIDMWSAGCIFAEL 195
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
FQLL + CH + H D+K EN+L+ + + L+DF + +P
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT--- 169
Query: 110 GGKRLCYLAPE-----RFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
L Y APE ++Y ++DI+++GC+ AE+
Sbjct: 170 ----LWYRAPEILLGCKYYS--------------TAVDIWSLGCIFAEM 200
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 76 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 134
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 135 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 186
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 187 -------------TAVDIWSLGCIFAEM 201
>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVJ|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVK|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVL|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVM|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVN|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|3BE9|A Chain A, Structure-Based Design And Synthesis Of Novel Macrocyclic
Pyrazolo[1,5-A] [1,3,5]triazine Compounds As Potent
Inhibitors Of Protein Kinase Ck2 And Their Anticancer
Activities
Length = 352
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 141 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 199
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 200 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 242
Query: 155 LEVPFF 160
+ PFF
Sbjct: 243 RKEPFF 248
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 73 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 131
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 132 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 183
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 184 -------------TAVDIWSLGCIFAEM 198
>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex
With The Inhibitor
4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68)
Length = 331
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 120 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 178
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 179 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 221
Query: 155 LEVPFF 160
+ PFF
Sbjct: 222 RKEPFF 227
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
Q+L +V CH GI H D+K EN+L+ S + A F T
Sbjct: 111 QILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTP 170
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHLL-- 166
G YL+PE V + P +D++A G ++ L + P F E H L
Sbjct: 171 G----YLSPE----------VLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQ 216
Query: 167 AYRRGQYD-PSQHLEKI-PDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ G YD PS + + P++ + +I M+ + P R +A L++
Sbjct: 217 QIKAGAYDFPSPEWDTVTPEA--KDLINKMLTINPAKRITASEALKH 261
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 81 ETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAE 140
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 141 NLLLDADMNIKIADFG 156
>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc
pdb|3FL5|A Chain A, Protein Kinase Ck2 In Complex With The Inhibitor
Quinalizarin
pdb|3PZH|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With
Emodin At 1.92 A Resolution
Length = 332
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 121 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 179
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 180 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 222
Query: 155 LEVPFF 160
+ PFF
Sbjct: 223 RKEPFF 228
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGXKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLSFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 75 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 133
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 134 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 185
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 186 -------------TAVDIWSLGCIFAEM 200
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 76 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 134
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 135 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 186
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 187 -------------TAVDIWSLGCIFAEM 201
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L ++ E + Q++ AV+ CH+K I H D+K E
Sbjct: 76 ETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE 135
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 136 NLLLDADMNIKIADFG 151
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 79 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 137
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 138 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 189
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 190 -------------TAVDIWSLGCIFAEM 204
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 71 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 129
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 130 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 181
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 182 -------------TAVDIWSLGCIFAEM 196
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 79 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 137
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 138 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGXKYYS- 189
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 190 -------------TAVDIWSLGCIFAEM 204
>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor
Length = 335
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 122 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 180
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 181 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 223
Query: 155 LEVPFF 160
+ PFF
Sbjct: 224 RKEPFF 229
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 73 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 131
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 132 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 183
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 184 -------------TAVDIWSLGCIFAEM 198
>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
Inhibitor
Length = 369
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 135 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 192
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++D+++VGC++ E+
Sbjct: 193 TRY-------------YRAPEVILGMG----------YKENVDLWSVGCIMGEM 223
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 73 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 131
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 132 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 183
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 184 -------------TAVDIWSLGCIFAEM 198
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 75 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 133
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 134 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 185
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 186 -------------TAVDIWSLGCIFAEM 200
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 74 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 132
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 133 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 184
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 185 -------------TAVDIWSLGCIFAEM 199
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 71 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 129
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 130 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 181
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 182 -------------TAVDIWSLGCIFAEM 196
>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|B Chain B, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|C Chain C, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|D Chain D, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1F0Q|A Chain A, Crystal Structure Of The Alpha Subunit Of Protein Kinase
Ck2 In Complex With The Nucleotide Competitive Inhibitor
Emodin
pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1J91|B Chain B, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1JAM|A Chain A, Crystal Structure Of Apo-Form Of Z. Mays Ck2 Protein
Kinase Alpha Subunit
pdb|1LP4|A Chain A, Crystal Structure Of A Binary Complex Of The Catalytic
Subunit Of Protein Kinase Ck2 With Mg-Amppnp
pdb|1LPU|A Chain A, Low Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1LR4|A Chain A, Room Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1OM1|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With Iqa
pdb|1ZOE|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|1ZOG|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives
pdb|1ZOH|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|2OXD|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole K17, K22 And K32 Inhibitors
pdb|2OXX|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|B Chain B, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|3PWD|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Nbc (Z1)
Length = 332
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 121 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 179
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 180 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 222
Query: 155 LEVPFF 160
+ PFF
Sbjct: 223 RKEPFF 228
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 71 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 129
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 130 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT-------LWYRAPEILLGCKYYS- 181
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 182 -------------TAVDIWSLGCIFAEM 196
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCEN 73
+ D+ YL+ Y L + L V K+++ +QL+ +K H G+ H D+K N
Sbjct: 81 DNDRDVYLVFDYMETDLHAVIRAN-ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSN 139
Query: 74 VLVTSWNWLYLSDFA---SF-----KPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEH 125
+L+ + + ++DF SF IP Y+A R+Y
Sbjct: 140 ILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVAT-RWYR- 197
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
E+ + K +D++++GC++ E+ P F
Sbjct: 198 APEILLGSTKYTK-GIDMWSLGCILGEILCGKPIF 231
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 84 ETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAE 143
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 144 NLLLDADMNIKIADFG 159
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 74 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 132
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 133 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 184
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 185 -------------TAVDIWSLGCIFAEM 199
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
3,4,5,6,7-Pentabromo-1h-Indazole (K64)
pdb|3KXH|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
(2-Dymethylammino-4,5,6,7-Tetrabromobenzoimidazol-1yl-
Acetic Acid (K66)
Length = 327
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 120 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 178
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 179 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 221
Query: 155 LEVPFF 160
+ PFF
Sbjct: 222 RKEPFF 227
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 75 HTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 133
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 134 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 185
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 186 -------------TAVDIWSLGCIFAEM 200
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 148 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 207
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 208 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 254
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 71 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 129
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 130 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 181
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 182 -------------TAVDIWSLGCIFAEM 196
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 72 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 130
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 182
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 183 -------------TAVDIWSLGCIFAEM 197
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 14 ETDKAAYLLRQYFFNSLRDRLSTPPFLSL---VEKKWLAFQLLLAVKQCHEKGICHGDIK 70
T+ YL+ ++ L+ + + + K +L FQLL + CH + H D+K
Sbjct: 71 HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL-FQLLQGLAFCHSHRVLHRDLK 129
Query: 71 CENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPE-----RFYEH 125
+N+L+ + + L+DF + +P L Y APE ++Y
Sbjct: 130 PQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT-------LWYRAPEILLGCKYYS- 181
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
++DI+++GC+ AE+
Sbjct: 182 -------------TAVDIWSLGCIFAEM 196
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 136 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 195
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 196 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 242
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 128 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 187
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 188 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 234
>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Amppnp
pdb|1DAY|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Gmppnp
pdb|1M2Q|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-Xanten-9-
OneCK2 KINASE COMPLEX
pdb|1M2R|A Chain A, Crystal Structure Of 5,8-Di-Amino-1,4-Di-Hydroxy-
AnthraquinoneCK2 KINASE COMPLEX
pdb|3KXM|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor K74
pdb|3KXN|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor Tetraiodobenzimidazole (K88)
Length = 327
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 120 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 178
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 179 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 221
Query: 155 LEVPFF 160
+ PFF
Sbjct: 222 RKEPFF 227
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 130 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 189
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 190 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 236
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 130 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 189
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 190 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 236
>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine
Mutation At Position 52
Length = 364
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 132 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 191
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 192 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 238
>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp
pdb|2CN8|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Debromohymenialdisine
pdb|2WTC|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTD|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTI|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XBJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XM8|A Chain A, Co-Crystal Structure Of A Small Molecule Inhibitor Bound
To The Kinase Domain Of Chk2
pdb|2XM9|A Chain A, Structure Of A Small Molecule Inhibitor With The Kinase
Domain Of Chk2
pdb|4A9R|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9S|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9T|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9U|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
Length = 329
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK 91
K +Q+LLAV+ HE GI H D+K ENVL++S + ++DF K
Sbjct: 123 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK 171
>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv976
Length = 323
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK 91
K +Q+LLAV+ HE GI H D+K ENVL++S + ++DF K
Sbjct: 117 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK 165
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 128 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 187
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 188 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 234
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 133 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 192
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 193 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 239
>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
Length = 358
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 32/114 (28%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA-------SFKPTYIPYXX 99
+L +Q+L +K H GI H D+K N++V S L + DF SF T PY
Sbjct: 124 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMT--PYVV 181
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G K ++D+++VGC++ E+
Sbjct: 182 TRY-------------YRAPEVILGMG----------YKENVDLWSVGCIMGEM 212
>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In
Complex With Inhibitor Pv1533
Length = 322
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK 91
K +Q+LLAV+ HE GI H D+K ENVL++S + ++DF K
Sbjct: 116 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK 164
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 134 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 193
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 194 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 240
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 125 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 184
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 185 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 231
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 84 ETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKYIVHRDLKAE 143
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + ++DF
Sbjct: 144 NLLLDGDMNIKIADFG 159
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 132 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 191
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 192 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 238
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 126 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 185
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 186 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 232
>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1531
Length = 322
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK 91
K +Q+LLAV+ HE GI H D+K ENVL++S + ++DF K
Sbjct: 117 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK 165
>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-
AnthraquinoneCK2 KINASE COMPLEX
pdb|4DGO|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Tyrphostin
Ag99
Length = 325
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 120 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 178
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 179 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 221
Query: 155 LEVPFF 160
+ PFF
Sbjct: 222 RKEPFF 227
>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A
Specific Inhibitor
pdb|2W7X|A Chain A, Cellular Inhibition Of Checkpoint Kinase 2 And
Potentiation Of Cytotoxic Drugs By Novel Chk2 Inhibitor
Pv1019
pdb|2YIQ|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1322
pdb|2YIR|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1352
pdb|2YIT|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Pv1162, A Novel Inhibitor
pdb|2YCQ|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1115
pdb|2YCS|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Pv788
Length = 323
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK 91
K +Q+LLAV+ HE GI H D+K ENVL++S + ++DF K
Sbjct: 117 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK 165
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 132 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 191
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 192 VATRW----YRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 238
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 126 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 185
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 186 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 232
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 26/109 (23%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
FQLL + CH + H D+K +N+L+ + + L+DF + +P
Sbjct: 109 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVT--- 165
Query: 110 GGKRLCYLAPE-----RFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
L Y APE ++Y ++DI+++GC+ AE+
Sbjct: 166 ----LWYRAPEILLGCKYYS--------------TAVDIWSLGCIFAEM 196
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 132 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEX 191
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 192 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 238
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+ +Q+L +K H + H D+K N+L+ + L + DF + +
Sbjct: 133 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEX 192
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
T Y APE G + S+DI++VGC++AE+ P F H L
Sbjct: 193 VATR----WYRAPEIMLNSKGYTK---------SIDIWSVGCILAEMLSNRPIFPGKHYL 239
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 47 WLAF-QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
W F QL A++ H + + H DIK NV +T+ + L D + +
Sbjct: 139 WKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGR-----FFSSKTTAA 193
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G Y++PER +E+G + DI+++GC++ E+ L+ PF+
Sbjct: 194 HSLVGTPY--YMSPERIHENGYNFKS----------DIWSLGCLLYEMAALQSPFY 237
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 83 ETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE 142
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 143 NLLLDADMNIKIADFG 158
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 83 ETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE 142
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 143 NLLLDADMNIKIADFG 158
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
Q+L +V CH GI H D+K EN+L+ S + A F T
Sbjct: 111 QILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTP 170
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHLL-- 166
G YL+PE V + P +D++A G ++ L + P F E H L
Sbjct: 171 G----YLSPE----------VLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQ 216
Query: 167 AYRRGQYD-PSQHLEKI-PDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ G YD PS + + P++ + +I M+ + P R +A L++
Sbjct: 217 QIKAGAYDFPSPEWDTVTPEA--KDLINKMLTINPAKRITASEALKH 261
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 83 ETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE 142
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 143 NLLLDADMNIKIADFG 158
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 83 ETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE 142
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 143 NLLLDADMNIKIADFG 158
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L + E + Q++ AV+ CH+K I H D+K E
Sbjct: 83 ETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE 142
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 143 NLLLDADMNIKIADFG 158
>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Luteolin
Length = 326
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 120 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 178
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 179 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 221
Query: 155 LEVPFFELSHLLAYRRGQYDPSQHLEKIPDSGIRKMIL--HMIQLEPEL 201
+ PFF Y +D + K+ + + L + I+L+P+L
Sbjct: 222 RKEPFF-------YGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQL 263
>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Apigenin
Length = 326
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 38 PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIP 96
P L+ + ++ ++LL A+ CH +GI H D+K NV++ L L D+ Y P
Sbjct: 120 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHP 178
Query: 97 YXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV-AQDAPLKPSMDIFAVGCVIAEL-F 154
GK R+++ G E+ V QD S+D++++GC+ A + F
Sbjct: 179 --------------GKEYNVRVASRYFK-GPELLVDLQDYDY--SLDMWSLGCMFAGMIF 221
Query: 155 LEVPFFELSHLLAYRRGQYDPSQHLEKIPDSGIRKMIL--HMIQLEPEL 201
+ PFF Y +D + K+ + + L + I+L+P+L
Sbjct: 222 RKEPFF-------YGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQL 263
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 31/141 (21%)
Query: 996 ASVNCKFPEMGTSGTAKGSSINVEDASSPADLTGLPSFVRTSSIPDSGWRPRGILVAHLQ 1055
A ++ +F +K SI V D +SP D+T R +LV H
Sbjct: 215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT-----------------LRRVLVGHR- 256
Query: 1056 EHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMML 1115
+AVN + D + VSAS D T+KVW++ E F L H R + +
Sbjct: 257 ---AAVN--VVDFDDKYIVSASGDRTIKVWNTSTCE----FVRTLNGH---KRGIACLQY 304
Query: 1116 RHSAQVVVGACDGIIHMFSVD 1136
R VV G+ D I ++ ++
Sbjct: 305 RDRL-VVSGSSDNTIRLWDIE 324
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
FQLL + CH + H D+K +N+L+ + + L+DF + +P
Sbjct: 113 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVT--- 169
Query: 110 GGKRLCYLAPE-----RFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
L Y APE ++Y ++DI+++GC+ AE+
Sbjct: 170 ----LWYRAPEILLGCKYYS--------------TAVDIWSLGCIFAEM 200
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTS---WNWLYLSDFASFKPTYIPYXXXXXXXXXX 107
Q+L ++ CH GI H ++K EN+L+ S + L+DF I
Sbjct: 113 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFG----LAIEVNDSEAWHGFA 168
Query: 108 XTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHL 165
T G YL+PE V + P +DI+A G ++ L + P F E H
Sbjct: 169 GTPG----YLSPE----------VLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR 214
Query: 166 L--AYRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQ 210
L + G YD PS + + + +I M+ + P+ R +A+ L+
Sbjct: 215 LYAQIKAGAYDYPSPEWDTVTPEA-KSLIDSMLTVNPKKRITADQALK 261
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTS---WNWLYLSDFASFKPTYIPYXXXXXXXXXX 107
Q+L ++ CH GI H ++K EN+L+ S + L+DF I
Sbjct: 112 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFG----LAIEVNDSEAWHGFA 167
Query: 108 XTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHL 165
T G YL+PE V + P +DI+A G ++ L + P F E H
Sbjct: 168 GTPG----YLSPE----------VLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR 213
Query: 166 L--AYRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQ 210
L + G YD PS + + + +I M+ + P+ R +A+ L+
Sbjct: 214 LYAQIKAGAYDYPSPEWDTVTPEA-KSLIDSMLTVNPKKRITADQALK 260
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTS---WNWLYLSDFASFKPTYIPYXXXXXXXXXX 107
Q+L ++ CH GI H ++K EN+L+ S + L+DF I
Sbjct: 113 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFG----LAIEVNDSEAWHGFA 168
Query: 108 XTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHL 165
T G YL+PE V + P +DI+A G ++ L + P F E H
Sbjct: 169 GTPG----YLSPE----------VLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR 214
Query: 166 L--AYRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQ 210
L + G YD PS + + + +I M+ + P+ R +A+ L+
Sbjct: 215 LYAQIKAGAYDYPSPEWDTVTPEA-KSLIDSMLTVNPKKRITADQALK 261
>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|C Chain C, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|D Chain D, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|E Chain E, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|F Chain F, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|G Chain G, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|H Chain H, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 443
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTS 78
K +Q+LLAV+ HE GI H D+K ENVL++S
Sbjct: 256 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSS 288
>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6U|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 419
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTS 78
K +Q+LLAV+ HE GI H D+K ENVL++S
Sbjct: 242 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSS 274
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 20/194 (10%)
Query: 1045 RPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHL 1104
+ G+ L H V ++ +S D F +S S D +++WD L +S R R H
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD---LAAGVSTR-RFVGHT 472
Query: 1105 EGSRALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAI 1164
+ L + Q+V + D I +++ LG KY+ I +
Sbjct: 473 K--DVLSVAFSLDNRQIVSASRDRTIKLWNT------LGEC-KYT----ISEGGEGHRDW 519
Query: 1165 VTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWF 1224
V+ V + + N + ++ + + +W+ + TL GYVS++ P G+
Sbjct: 520 VSCVRF-SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLC 576
Query: 1225 VSGSSRGVLTLWDL 1238
SG GV+ LWDL
Sbjct: 577 ASGGKDGVVLLWDL 590
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 48 LAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXX 107
+A +++ + H KGI H D+K +NV + + ++DF F + +
Sbjct: 135 IAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGK-VVITDFGLFSISGVLQAGRREDKLRI 193
Query: 108 XTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPF 159
G LC+LAPE + + + P D+FA+G + EL E PF
Sbjct: 194 QNGW--LCHLAPEIIRQLSPDTE-EDKLPFSKHSDVFALGTIWYELHAREWPF 243
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
Q+L AV CH+ G+ H D+K EN+L+ S A F T
Sbjct: 129 QILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTP 188
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHLL-- 166
G YL+PE V + P +D++A G ++ L + P F E H L
Sbjct: 189 G----YLSPE----------VLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQ 234
Query: 167 AYRRGQYD-PSQHLEKI-PDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ G YD PS + + P++ + +I M+ + P R +A L++
Sbjct: 235 QIKAGAYDFPSPEWDTVTPEA--KDLINKMLTINPSKRITAAEALKH 279
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
Q+L AV CH+ G+ H D+K EN+L+ S A F T
Sbjct: 111 QILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTP 170
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHLL-- 166
G YL+PE + ++A KP +DI+A G ++ L + P F E H L
Sbjct: 171 G----YLSPE---------VLRKEAYGKP-VDIWACGVILYILLVGYPPFWDEDQHKLYQ 216
Query: 167 AYRRGQYD-PSQHLEKI-PDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ G YD PS + + P++ + +I M+ + P R +A L++
Sbjct: 217 QIKAGAYDFPSPEWDTVTPEA--KNLINQMLTINPAKRITAHEALKH 261
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 15/149 (10%)
Query: 19 AYLLRQYF-----FNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCEN 73
A+LL +F +N + FL+ + WL + ++ H KG H D+K N
Sbjct: 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTN 164
Query: 74 VLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKR--LCYLAPERFYEHGGEMQV 131
+L+ L D S I +R + Y APE F V
Sbjct: 165 ILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELF-------SV 217
Query: 132 AQDAPLKPSMDIFAVGCVI-AELFLEVPF 159
+ D++++GCV+ A +F E P+
Sbjct: 218 QSHCVIDERTDVWSLGCVLYAMMFGEGPY 246
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
K FQLL + CH + + H D+K +N+L+ L L++F + IP
Sbjct: 104 KSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVV 163
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
L Y P+ + G ++ S+D+++ GC+ AEL
Sbjct: 164 T-------LWYRPPDVLF--GAKLYST-------SIDMWSAGCIFAEL 195
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
K+ A ++ LA++ H K I + D+K EN+L+ + ++DF K Y+P
Sbjct: 109 KFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAK--YVPDVTY----- 161
Query: 106 XXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFF 160
LC Y+APE V P S+D ++ G +I E+ PF+
Sbjct: 162 -------XLCGTPDYIAPE----------VVSTKPYNKSIDWWSFGILIYEMLAGYTPFY 204
Query: 161 ELSHLLAYRR 170
+ + + Y +
Sbjct: 205 DSNTMKTYEK 214
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 1051 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKD 1093
VA + H S V+ + S D S F++ASDD T++VW+++K+ K+
Sbjct: 882 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands
pdb|3GOK|B Chain B, Binding Site Mapping Of Protein Ligands
pdb|3GOK|C Chain C, Binding Site Mapping Of Protein Ligands
pdb|3GOK|D Chain D, Binding Site Mapping Of Protein Ligands
pdb|3GOK|E Chain E, Binding Site Mapping Of Protein Ligands
pdb|3GOK|F Chain F, Binding Site Mapping Of Protein Ligands
pdb|3GOK|G Chain G, Binding Site Mapping Of Protein Ligands
pdb|3GOK|H Chain H, Binding Site Mapping Of Protein Ligands
pdb|3GOK|I Chain I, Binding Site Mapping Of Protein Ligands
pdb|3GOK|J Chain J, Binding Site Mapping Of Protein Ligands
pdb|3GOK|K Chain K, Binding Site Mapping Of Protein Ligands
pdb|3GOK|L Chain L, Binding Site Mapping Of Protein Ligands
Length = 334
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 143 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 198
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 199 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 234
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 235 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 292
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 1051 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKD 1093
VA + H S V+ + S D S F++ASDD T++VW+++K+ K+
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii,
25.M01780 Or Tgme49_007820
Length = 458
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 20 YLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79
Y++ + + + TP +L+ + K L + LL+ VK H GI H D+K N LV
Sbjct: 133 YVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQD 192
Query: 80 NWLYLSDFA 88
+ + DF
Sbjct: 193 CSVKVCDFG 201
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
pdb|1NY3|A Chain A, Crystal Structure Of Adp Bound To Map Kap Kinase 2
Length = 400
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 173 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 228
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 229 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 264
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 265 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 322
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXX 106
+L +Q+L +K H GI H D+K N++V S L + DF + +
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTR 189
Query: 107 XXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y APE G V DI++VGC++ EL
Sbjct: 190 Y--------YRAPEVILGMGYAANV----------DIWSVGCIMGEL 218
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++L +QLL +K H GI H D+K NV V + L + DF +
Sbjct: 134 QFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLAR-----------QAD 182
Query: 106 XXXTGG-KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
TG Y APE M Q ++DI++VGC++AEL
Sbjct: 183 EEMTGYVATRWYRAPEIMLNW---MHYNQ------TVDIWSVGCIMAELL 223
>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
Length = 406
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 179 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 234
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 235 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 270
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 271 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 328
>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|B Chain B, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|C Chain C, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|D Chain D, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|E Chain E, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|F Chain F, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|G Chain G, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|H Chain H, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|I Chain I, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|J Chain J, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|K Chain K, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|L Chain L, Mk2 Kinase Bound To Compound 5b
Length = 318
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 127 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 182
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 183 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 218
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 219 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 276
>pdb|2OZA|A Chain A, Structure Of P38alpha Complex
Length = 356
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 129 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 184
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 185 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 220
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 221 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 278
>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal
Form-1, Soaking)
pdb|2JBP|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|B Chain B, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|C Chain C, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|D Chain D, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|E Chain E, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|F Chain F, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|G Chain G, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|H Chain H, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|I Chain I, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|J Chain J, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|K Chain K, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|L Chain L, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
Length = 326
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 135 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 190
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 191 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 226
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 227 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 284
>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform
Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo
Sapiens
Length = 350
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L+ + ++ ++LL A+ CH KGI H D+K NV++ L L D+ Y P
Sbjct: 129 LTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRLIDWG-LAEFYHPAQ 187
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEV 157
G L L + Y++ S+D++++GC++A + F
Sbjct: 188 EYNVRVASRYFKGPEL--LVDYQMYDY--------------SLDMWSLGCMLASMIFRRE 231
Query: 158 PFFE 161
PFF
Sbjct: 232 PFFH 235
>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor
6-(5-(2-Aminopyrimidin-4-Ylamino)-2-
Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide
Length = 320
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 127 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTEPCYTPY---- 182
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 183 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 218
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 219 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 276
>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1
pdb|3R30|A Chain A, Mk2 Kinase Bound To Compound 2
Length = 319
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 128 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 183
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 184 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 219
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 220 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 277
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 43 VEKKWLAF---QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXX 99
V +KW F +++LA+ H G+ H D+K +N+L+ L L+DF T +
Sbjct: 171 VPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFG----TCMKMDE 226
Query: 100 XXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVP 158
G Y++PE GG+ ++ D ++VG + E+ + + P
Sbjct: 227 TGMVHCDTAVGTPD--YISPEVLKSQGGDGYYGREC------DWWSVGVFLFEMLVGDTP 278
Query: 159 FFELSHLLAYRR 170
F+ S + Y +
Sbjct: 279 FYADSLVGTYSK 290
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++L +QLL +K H GI H D+K NV V + L + DF +
Sbjct: 134 QFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLAR-----------QAD 182
Query: 106 XXXTGG-KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
TG Y APE M Q ++DI++VGC++AEL
Sbjct: 183 EEMTGYVATRWYRAPEIMLNW---MHYNQ------TVDIWSVGCIMAELL 223
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.7 bits (86), Expect = 0.044, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L H + H+ +SAS D+T+++WD E L Y L+G AL +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGE--------LXYTLQGHTALVGL 357
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISR 1140
+ +V A DG I + + SR
Sbjct: 358 LRLSDKFLVSAAADGSIRGWDANDYSR 384
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 37.7 bits (86), Expect = 0.045, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 20 YLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79
Y++ + + L+ TP FL+ K + + LLL HE GI H D+K N L+
Sbjct: 106 YIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQD 165
Query: 80 NWLYLSDFA------SFKPTYIPYXXXXXXXXXXXTGG--KRLCYLAPERFYEHGGEMQV 131
+ + DF S K T I K+L R+Y E+ +
Sbjct: 166 CSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYR-APELIL 224
Query: 132 AQDAPLKPSMDIFAVGCVIAELF 154
Q+ K S+DI++ GC+ AEL
Sbjct: 225 LQENYTK-SIDIWSTGCIFAELL 246
>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|B Chain B, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|C Chain C, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|D Chain D, Structure Of Mk2 Complexed With Compound 76
pdb|3KC3|A Chain A, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|B Chain B, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|C Chain C, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|D Chain D, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|E Chain E, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|F Chain F, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|G Chain G, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|H Chain H, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|I Chain I, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|J Chain J, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|K Chain K, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|L Chain L, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3A2C|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|B Chain B, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|C Chain C, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|D Chain D, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|E Chain E, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|F Chain F, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|G Chain G, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|H Chain H, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|I Chain I, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|J Chain J, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|K Chain K, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|L Chain L, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
Length = 324
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 133 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 188
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 189 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 224
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 225 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 282
>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap
Kinase-2
Length = 325
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 134 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 189
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 190 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 225
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 226 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 283
>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To
Mapkap Kinase-2
pdb|3FYJ|X Chain X, Crystal Structure Of An Optimzied Benzothiophene Inhibitor
Bound To Mapkap Kinase-2 (Mk-2)
pdb|3FYK|X Chain X, Crystal Structure Of A Benzthiophene Lead Bound To Mapkap
Kinase-2 (Mk-2)
Length = 327
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 51/179 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 129 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 184
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D++++G ++ L P F
Sbjct: 185 --------------YVAPE----------VLGPEKYDKSCDMWSLGVIMYILLCGYPPFY 220
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + ++ +
Sbjct: 221 SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE-VKMLIRNLLKTEPTQRMTITEFMNH 278
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 135 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANS 193
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSH- 164
T Y++PE E S D++A+GC+I +L +P F +
Sbjct: 194 FVGTAQ----YVSPELLTEKSA----------SKSSDLWALGCIIYQLVAGLPPFRAGNE 239
Query: 165 LLAYRRG---QYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQNYAAVVFPTY 220
L +++ +YD P + K R ++ ++ L+ R E ++ Y P
Sbjct: 240 YLIFQKIIKLEYDFPEKFFPK-----ARDLVEKLLVLDATKRLGCEE-MEGYG----PLK 289
Query: 221 FSPFLHNFYCCWNPLH 236
PF + W LH
Sbjct: 290 AHPFFES--VTWENLH 303
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 135 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 193
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 194 FVGTA----QYVSPELLTEKSA----------XKSSDLWALGCIIYQLVAGLPPF 234
>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein
Kinase Ck2alpha Prime With A Potent Indazole-Derivative
Inhibitor
Length = 339
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFASFKPTYIPYX 98
L+ + ++ ++LL A+ CH KGI H D+K NV++ L L D+ Y P
Sbjct: 134 LTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRLIDWG-LAEFYHPAQ 192
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEV 157
G L L + Y++ S+D++++GC++A + F
Sbjct: 193 EYNVRVASRYFKGPEL--LVDYQMYDY--------------SLDMWSLGCMLASMIFRRE 236
Query: 158 PFFE 161
PFF
Sbjct: 237 PFFH 240
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTS---WNWLYLSDFASFKPTYIPYXXXXXXXXXX 107
Q+L AVK HE GI H D+K EN+L + + + ++DF K
Sbjct: 114 QVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK---------MEQNGIM 164
Query: 108 XTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEV-PFFELSHLL 166
T Y+APE V P ++D +++G + L PF+E +
Sbjct: 165 STACGTPGYVAPE----------VLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK 214
Query: 167 AY---RRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ + G Y+ S + I +S + I H+++ +P R++ E L +
Sbjct: 215 LFEKIKEGYYEFESPFWDDISESA-KDFICHLLEKDPNERYTCEKALSH 262
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 11 FWQETDKAAY----LLRQYFFNSLRDR-----LSTPPFLSLVE--------KKWLAF--- 50
FW+E D A+ + Q F+ DR + P LV +KW F
Sbjct: 121 FWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTA 180
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
+++LA+ H G H D+K +N+L+ L L+DF T + G
Sbjct: 181 EVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG----TCMKMNKEGMVRCDTAVG 236
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHLLAYR 169
Y++PE GG+ ++ D ++VG + E+ + + PF+ S + Y
Sbjct: 237 TPD--YISPEVLKSQGGDGYYGREC------DWWSVGVFLYEMLVGDTPFYADSLVGTYS 288
Query: 170 R 170
+
Sbjct: 289 K 289
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 19/90 (21%)
Query: 1051 VAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRAL 1110
VA + H S V+ + S D S F+++SDD T+++W+++K+ K+ +
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSA--------------- 925
Query: 1111 CTMMLRHSAQVVVGACDGIIHMFSVDHISR 1140
+ML+ VV + + + +VDHI R
Sbjct: 926 --VMLKQEVDVVFQ--ENEVMVLAVDHIRR 951
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Query: 1057 HCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTY-HLEGSRALCTMML 1115
H ++VN S D S S D T+K+WD+ + S + + +LE + +++
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Query: 1116 R------HSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVN 1169
+ A+++V A + I +F + H S LG + T + + +
Sbjct: 808 KCCSWSADGARIMVAAKNKIF-LFDI-HTSGLLGEIH------------TGHHSTIQYCD 853
Query: 1170 YNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSS 1229
++ N H+ + + + LW+T S S + +V ++ P G+ F++ S
Sbjct: 854 FSPQN---HLAVVALSQYCVELWNTDSRSKVADCRG--HLSWVHGVMFSPDGSSFLTSSD 908
Query: 1230 RGVLTLWDLR 1239
+ LW+ +
Sbjct: 909 DQTIRLWETK 918
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 11 FWQETDKAAY----LLRQYFFNSLRDR-----LSTPPFLSLVE--------KKWLAF--- 50
FW+E D A+ + Q F+ DR + P LV +KW F
Sbjct: 116 FWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTA 175
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
+++LA+ H G H D+K +N+L+ L L+DF T + G
Sbjct: 176 EVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG----TCMKMNKEGMVRCDTAVG 231
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHLLAYR 169
Y++PE GG+ ++ D ++VG + E+ + + PF+ S + Y
Sbjct: 232 TPD--YISPEVLKSQGGDGYYGREC------DWWSVGVFLYEMLVGDTPFYADSLVGTYS 283
Query: 170 R 170
+
Sbjct: 284 K 284
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 48 LAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXX 107
+ +L A+ H +G+ H DIK +++L+TS + LSDF +
Sbjct: 146 VCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFG-----FCAQVSKEVPKRKX 200
Query: 108 XTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLL 166
G ++APE V P +DI+++G ++ E+ E P+F L
Sbjct: 201 LVGTP--YWMAPE----------VISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQ 248
Query: 167 AYR--RGQYDPS-QHLEKIPDSGIRKMILHMIQLEPELRFSAESYL 209
A R R P + L K+ S +R + M+ EP R +A+ L
Sbjct: 249 AMRRIRDSLPPRVKDLHKV-SSVLRGFLDLMLVREPSQRATAQELL 293
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 37.4 bits (85), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 117 WQVLEAVRHCHNXGVLHRDIKDENILIDLNRGELKLIDFGS 157
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 124 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 183
Query: 72 ENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N L+ L L DF P T + Y+ PE + +
Sbjct: 184 ANFLIVD-GMLKLIDFG-IANQMQPDTTSVVKDSQVGT----VNYMPPEAIKDMSSSREN 237
Query: 132 A-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPDSGI 187
+ + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+ +
Sbjct: 238 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 297
Query: 188 RKMILHMIQLEPELRFS-----AESYLQ 210
+ ++ ++ +P+ R S A Y+Q
Sbjct: 298 QDVLKCCLKRDPKQRISIPELLAHPYVQ 325
>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|B Chain B, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|C Chain C, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
Length = 368
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 21/144 (14%)
Query: 27 FNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT------SWN 80
F+ L+D P + V + +AFQL AVK H+ + H D+K EN+L ++N
Sbjct: 123 FDFLKDNNYLPYPIHQV--RHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYN 180
Query: 81 WLYLSDFASFKPT---YIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPL 137
D S K T + + T Y APE E G
Sbjct: 181 LEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELG----------W 230
Query: 138 KPSMDIFAVGCVIAELFLEVPFFE 161
D++++GC+I E ++ F+
Sbjct: 231 SQPCDVWSIGCIIFEYYVGFTLFQ 254
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
Q+L AV CH+ G+ H ++K EN+L+ S A F T
Sbjct: 118 QILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTP 177
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHLL-- 166
G YL+PE V + P +D++A G ++ L + P F E H L
Sbjct: 178 G----YLSPE----------VLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQ 223
Query: 167 AYRRGQYD-PSQHLEKI-PDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ G YD PS + + P++ + +I M+ + P R +A L++
Sbjct: 224 QIKAGAYDFPSPEWDTVTPEA--KDLINKMLTINPSKRITAAEALKH 268
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 11 FWQETDKAAY----LLRQYFFNSLRDR-----LSTPPFLSLVE--------KKWLAF--- 50
FW+E D A+ + Q F+ DR + P LV +KW F
Sbjct: 121 FWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTA 180
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
+++LA+ H G H D+K +N+L+ L L+DF T + G
Sbjct: 181 EVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG----TCMKMNKEGMVRCDTAVG 236
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHLLAYR 169
Y++PE GG+ ++ D ++VG + E+ + + PF+ S + Y
Sbjct: 237 TPD--YISPEVLKSQGGDGYYGREC------DWWSVGVFLYEMLVGDTPFYADSLVGTYS 288
Query: 170 R 170
+
Sbjct: 289 K 289
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 37.0 bits (84), Expect = 0.078, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
ET+K YL+ +Y + D L E + Q++ AV+ CH+K I H D+K E
Sbjct: 83 ETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE 142
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + + ++DF
Sbjct: 143 NLLLDADXNIKIADFG 158
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 37.0 bits (84), Expect = 0.079, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 20 YLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79
Y++ + + L+ TP FL+ K + + LLL K HE GI H D+K N L+
Sbjct: 108 YIVLEIADSDLKKLFKTPIFLTEQHVKTILYNLLLGEKFIHESGIIHRDLKPANCLLNQD 167
Query: 80 NWLYLSDFA 88
+ + DF
Sbjct: 168 CSVKICDFG 176
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 37.0 bits (84), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 124 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 183
Query: 72 ENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N L+ L L DF P T + Y+ PE + +
Sbjct: 184 ANFLIVD-GMLKLIDFG-IANQMQPDTTSVVKDSQVGT----VNYMPPEAIKDMSSSREN 237
Query: 132 A-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPDSGI 187
+ + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+ +
Sbjct: 238 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 297
Query: 188 RKMILHMIQLEPELRFS-----AESYLQ 210
+ ++ ++ +P+ R S A Y+Q
Sbjct: 298 QDVLKCCLKRDPKQRISIPELLAHPYVQ 325
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
GI L+ H V+++ IS D F +S S D T+++WD L + R R H +
Sbjct: 53 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTTGTTTR-RFVGHTK-- 106
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYS-GISDIKKKDTKEGAIVT 1166
L + Q+V G+ D I +++ + + E +S +S ++ I+
Sbjct: 107 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 1167 LVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVS 1226
++ + +++ NC + ++N I GY++++ P G+ S
Sbjct: 167 SCGWD-----KLVKVWNLANCKL-----KTNH-------IGHTGYLNTVTVSPDGSLCAS 209
Query: 1227 GSSRGVLTLWDL 1238
G G LWDL
Sbjct: 210 GGKDGQAMLWDL 221
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
GI L+ H V+++ IS D F +S S D T+++WD L + R R H +
Sbjct: 76 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTTGTTTR-RFVGHTK-- 129
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYS-GISDIKKKDTKEGAIVT 1166
L + Q+V G+ D I +++ + + E +S +S ++ I+
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 1167 LVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVS 1226
++ + +++ NC + ++N I GY++++ P G+ S
Sbjct: 190 SCGWD-----KLVKVWNLANCKL-----KTNH-------IGHTGYLNTVTVSPDGSLCAS 232
Query: 1227 GSSRGVLTLWDL 1238
G G LWDL
Sbjct: 233 GGKDGQAMLWDL 244
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 30/166 (18%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL 114
A+ H+ GI H D+K N+++++ N + + DF + I G +
Sbjct: 145 ALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA--IADSGNSVTQTAAVIGTAQ- 201
Query: 115 CYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHL-LAYRRGQ 172
YL+PE+ A+ + D++++GCV+ E+ E PF S + +AY+ +
Sbjct: 202 -YLSPEQ----------ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVR 250
Query: 173 YDPSQHLEKIPDSG--------IRKMILHMIQLEPELRFSAESYLQ 210
DP IP S + ++L + PE R+ + ++
Sbjct: 251 EDP------IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 290
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 61/186 (32%)
Query: 51 QLLLAVKQCHEKG-----ICHGDIKCENVLVTSWNWLYLSDFA---------SFKPTYI- 95
QL LA+K+CH + + H D+K NV + + L DF SF T++
Sbjct: 119 QLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVG 178
Query: 96 -PYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
PY Y++PE+ M + + DI+++GC++ EL
Sbjct: 179 TPY------------------YMSPEQM----NRMSYNEKS------DIWSLGCLLYELC 210
Query: 155 LEVPFF------ELSHLL---AYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSA 205
+P F EL+ + +RR Y S L +I I M+ L+ R S
Sbjct: 211 ALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEI--------ITRMLNLKDYHRPSV 262
Query: 206 ESYLQN 211
E L+N
Sbjct: 263 EEILEN 268
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 133 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANA 191
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 192 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 232
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 169 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 209
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 122 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 162
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 156 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 196
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 136 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANS 194
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSH- 164
T Y++PE E S D++A+GC+I +L +P F +
Sbjct: 195 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPFRAGNE 240
Query: 165 LLAYRRG---QYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQNYAAVVFPTY 220
L +++ +YD P + K R ++ ++ L+ R E ++ Y P
Sbjct: 241 YLIFQKIIKLEYDFPEKFFPK-----ARDLVEKLLVLDATKRLGCEE-MEGYG----PLK 290
Query: 221 FSPFLHNFYCCWNPLH 236
PF + W LH
Sbjct: 291 AHPFFES--VTWENLH 304
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 150 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 190
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL 114
A+ H+ GI H D+K N+L+++ N + + DF + I G +
Sbjct: 128 ALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARA--IADSGNSVXQTAAVIGTAQ- 184
Query: 115 CYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHL-LAYRRGQ 172
YL+PE+ A+ + D++++GCV+ E+ E PF S + +AY+ +
Sbjct: 185 -YLSPEQ----------ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVR 233
Query: 173 YDPSQHLEKIPDSG--------IRKMILHMIQLEPELRFSAESYLQ 210
DP IP S + ++L + PE R+ + ++
Sbjct: 234 EDP------IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 150 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 190
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 164 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 204
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 149 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 189
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 149 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 189
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 164 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 204
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 122 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 162
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 122 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 162
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 149 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 189
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 144 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 184
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 150 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 190
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 149 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 189
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 137 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 177
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 137 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 177
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 150 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 190
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 18 AAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
+ Y++++Y L + L P L + +QLL +K H + H D+K N+ +
Sbjct: 96 SVYIVQEYMETDLANVLEQGPLLE-EHARLFMYQLLRGLKYIHSANVLHRDLKPANLFIN 154
Query: 78 SWNW-LYLSDFASFKPTYIPYXXXXXXXXXXXTGGKR--LCYLAPERFYEHGGEMQVAQD 134
+ + L + DF + Y T R L+P + +
Sbjct: 155 TEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTK---------- 204
Query: 135 APLKPSMDIFAVGCVIAELFLEVPFFELSHLL 166
++D++A GC+ AE+ F +H L
Sbjct: 205 -----AIDMWAAGCIFAEMLTGKTLFAGAHEL 231
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 121 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 161
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 136 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 176
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 137 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 177
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 136 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 176
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 21/211 (9%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 124 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 183
Query: 72 ENVLVTSWNWLYLSDFA---SFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGE 128
N L+ L L DF +P G + Y+ PE +
Sbjct: 184 ANFLIVD-GMLKLIDFGIANQMQPD------TTSVVKDSQVGA--VNYMPPEAIKDMSSS 234
Query: 129 MQVA-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPD 184
+ + + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+
Sbjct: 235 RENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPE 294
Query: 185 SGIRKMILHMIQLEPELRFS-----AESYLQ 210
++ ++ ++ +P+ R S A Y+Q
Sbjct: 295 KDLQDVLKCCLKRDPKQRISIPELLAHPYVQ 325
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 121 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 161
>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 164 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 204
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++L +QLL +K H GI H D+K NV V L + DF +
Sbjct: 126 QFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLAR-----------QAD 174
Query: 106 XXXTGG-KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF 154
TG Y APE M Q ++DI++VGC++AEL
Sbjct: 175 EEMTGYVATRWYRAPEIML---NWMHYNQ------TVDIWSVGCIMAELL 215
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 29/186 (15%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW---LYLSD 86
L DR+ F + + L Q+L AV H GI H D+K EN+L S + + +SD
Sbjct: 107 LFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISD 166
Query: 87 FASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAV 146
F K T Y+APE V P ++D +++
Sbjct: 167 FGLSK--------MEGKGDVMSTACGTPGYVAPE----------VLAQKPYSKAVDCWSI 208
Query: 147 GCVIAELFL--EVPFFELSHLLAYR---RGQYD-PSQHLEKIPDSGIRKMILHMIQLEPE 200
G VIA + L PF++ + + + +Y+ S + + I DS + I ++++ +P
Sbjct: 209 G-VIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA-KDFIRNLMEKDPN 266
Query: 201 LRFSAE 206
R++ E
Sbjct: 267 KRYTCE 272
>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|B Chain B, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|3PE1|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Alpha
Subunit In Complex With The Inhibitor Cx-4945
pdb|3PE2|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 In Complex
With The Inhibitor Cx-5011
pdb|3R0T|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Alpha
Subunit In Complex With The Inhibitor Cx-5279
Length = 337
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYX 98
L+ + ++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 128 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-- 184
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEV 157
G+ R+++ G E+ V S+D++++GC++A + F +
Sbjct: 185 ------------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKE 230
Query: 158 PFFE 161
PFF
Sbjct: 231 PFFH 234
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 113 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 171
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 172 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 212
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 133 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 191
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 192 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 232
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 135 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 193
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 194 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 234
>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase
Ck2
pdb|2R7I|B Chain B, Crystal Structure Of Catalytic Subunit Of Protein Kinase
Ck2
pdb|2R7I|C Chain C, Crystal Structure Of Catalytic Subunit Of Protein Kinase
Ck2
pdb|2R7I|D Chain D, Crystal Structure Of Catalytic Subunit Of Protein Kinase
Ck2
Length = 335
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYX 98
L+ + ++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 128 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-- 184
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEV 157
G+ R+++ G E+ V S+D++++GC++A + F +
Sbjct: 185 ------------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKE 230
Query: 158 PFFE 161
PFF
Sbjct: 231 PFFH 234
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 133 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 191
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 192 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 232
>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With
Emodin At Ph 8.5
pdb|3Q9X|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With
Emodin At Ph 6.5
pdb|3Q9X|B Chain B, Crystal Structure Of Human Ck2 Alpha In Complex With
Emodin At Ph 6.5
pdb|3Q9Y|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With
Quinalizarin At Ph 8.5
pdb|3Q9Z|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With
Quinalizarin At Ph 6.5
pdb|3Q9Z|B Chain B, Crystal Structure Of Human Ck2 Alpha In Complex With
Quinalizarin At Ph 6.5
pdb|3QA0|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph
6.5
pdb|3QA0|B Chain B, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph
6.5
Length = 336
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYX 98
L+ + ++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 128 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-- 184
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEV 157
G+ R+++ G E+ V S+D++++GC++A + F +
Sbjct: 185 ------------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKE 230
Query: 158 PFFE 161
PFF
Sbjct: 231 PFFH 234
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 138 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 196
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 197 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 237
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 133 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 191
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 192 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 232
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 136 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 194
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 195 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 235
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 135 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 193
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 194 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 234
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 135 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 193
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 194 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 234
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 135 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 193
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 194 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 234
>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And
Human Ck2alpha' In Complex With A Non-hydrolysable
Atp-analogue
pdb|3U87|B Chain B, Structure Of A Chimeric Construct Of Human Ck2alpha And
Human Ck2alpha' In Complex With A Non-hydrolysable
Atp-analogue
Length = 349
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYX 98
L+ + ++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 128 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-- 184
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEV 157
G+ R+++ G E+ V S+D++++GC++A + F +
Sbjct: 185 ------------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKE 230
Query: 158 PFFE 161
PFF
Sbjct: 231 PFFH 234
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 112 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 170
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 171 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 211
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 120 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 160
>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With
Ellagic Acid
pdb|3AMY|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With
Apigenin
pdb|3AT2|A Chain A, Crystal Structure Of Ck2alpha
pdb|3AT3|A Chain A, Crystal Structure Of Ck2alpha With Pyradine Derivative
pdb|3AT4|A Chain A, Crystal Structure Of Ck2alpha With Pyradine Derivertive
pdb|3AXW|A Chain A, Crystal Structure Of Human Ck2alpha Complexed With A
Potent Inhibitor
Length = 340
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYX 98
L+ + ++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 133 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-- 189
Query: 99 XXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEV 157
G+ R+++ G E+ V S+D++++GC++A + F +
Sbjct: 190 ------------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKE 235
Query: 158 PFFE 161
PFF
Sbjct: 236 PFFH 239
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 117 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 157
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 140 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 198
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 199 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 239
>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors
Length = 273
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVT-SWNWLYLSDFAS 89
+Q+L AV+ CH G+ H DIK EN+L+ + L L DF S
Sbjct: 117 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS 157
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 111 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 169
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 170 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 210
>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
pdb|2H34|B Chain B, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
Length = 309
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 66 HGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEH 125
H D+K EN+LV++ ++ YL DF T T G L Y APERF E
Sbjct: 157 HRDVKPENILVSADDFAYLVDFGIASAT-----TDEKLTQLGNTVGT-LYYXAPERFSES 210
Query: 126 GGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHL 165
+ DI+A+ CV+ E P ++ L
Sbjct: 211 HATYRA----------DIYALTCVLYECLTGSPPYQGDQL 240
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ +++ A++ H KGI H D+K EN+L+ + ++DF + K P
Sbjct: 110 RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANX 168
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
T Y++PE E S D++A+GC+I +L +P F
Sbjct: 169 FVGTAQ----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 209
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 20/157 (12%)
Query: 53 LLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGK 112
LLA+ H +G+ H D+K N+ + L DF + G
Sbjct: 167 LLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFG------LLVELGTAGAGEVQEGDP 220
Query: 113 RLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLLAYRRGQ 172
R Y+APE G + D+F++G I E+ + R
Sbjct: 221 R--YMAPELLQGSYGT-----------AADVFSLGLTILEVACNMELPHGGEGWQQLRQG 267
Query: 173 YDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYL 209
Y P + + S +R +++ M++ +P+LR +AE+ L
Sbjct: 268 YLPPEFTAGL-SSELRSVLVMMLEPDPKLRATAEALL 303
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 30/166 (18%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL 114
A+ H+ GI H D+K N+++++ N + + DF + I G +
Sbjct: 128 ALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA--IADSGNSVTQTAAVIGTAQ- 184
Query: 115 CYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHL-LAYRRGQ 172
YL+PE+ A+ + D++++GCV+ E+ E PF S + +AY+ +
Sbjct: 185 -YLSPEQ----------ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVR 233
Query: 173 YDPSQHLEKIPDSG--------IRKMILHMIQLEPELRFSAESYLQ 210
DP IP S + ++L + PE R+ + ++
Sbjct: 234 EDP------IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 30/166 (18%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL 114
A+ H+ GI H D+K N+++++ N + + DF + I G +
Sbjct: 128 ALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA--IADSGNSVTQTAAVIGTAQ- 184
Query: 115 CYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHL-LAYRRGQ 172
YL+PE+ A+ + D++++GCV+ E+ E PF S + +AY+ +
Sbjct: 185 -YLSPEQ----------ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVR 233
Query: 173 YDPSQHLEKIPDSG--------IRKMILHMIQLEPELRFSAESYLQ 210
DP IP S + ++L + PE R+ + ++
Sbjct: 234 EDP------IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
Q+L +V H+ I H D+K EN+L+ S A F T
Sbjct: 138 QILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTP 197
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHLL-- 166
G YL+PE V + P +DI+A G ++ L + P F E H L
Sbjct: 198 G----YLSPE----------VLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQ 243
Query: 167 AYRRGQYD-PSQHLEKI-PDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ G YD PS + + P++ + +I M+ + P R +A+ L++
Sbjct: 244 QIKAGAYDFPSPEWDTVTPEA--KNLINQMLTINPAKRITADQALKH 288
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L H + H+ +SAS D+T+++WD E L Y L+G AL +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--------LMYTLQGHTALVGL 357
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISR 1140
+ +V A DG I + + SR
Sbjct: 358 LRLSDKFLVSAAADGSIRGWDANDYSR 384
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 30/166 (18%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL 114
A+ H+ GI H D+K N+++++ N + + DF + I G +
Sbjct: 128 ALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA--IADSGNSVTQTAAVIGTAQ- 184
Query: 115 CYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL-EVPFFELSHL-LAYRRGQ 172
YL+PE+ A+ + D++++GCV+ E+ E PF S + +AY+ +
Sbjct: 185 -YLSPEQ----------ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVR 233
Query: 173 YDPSQHLEKIPDSG--------IRKMILHMIQLEPELRFSAESYLQ 210
DP IP S + ++L + PE R+ + ++
Sbjct: 234 EDP------IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 84/197 (42%), Gaps = 10/197 (5%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 77 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 136
Query: 72 ENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N L+ L L DF P T + Y+ PE + +
Sbjct: 137 ANFLIVD-GMLKLIDFG-IANQMQPDTTSVVKDSQVGT----VNYMPPEAIKDMSSSREN 190
Query: 132 A-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPDSGI 187
+ + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+ +
Sbjct: 191 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 250
Query: 188 RKMILHMIQLEPELRFS 204
+ ++ ++ +P+ R S
Sbjct: 251 QDVLKCCLKRDPKQRIS 267
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLV 76
L +R+ S E ++ QLL V CH ICH D+K EN L+
Sbjct: 103 LYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLL 149
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL 114
A+ H+ GI H D+K N+++++ N + + DF + I G +
Sbjct: 128 ALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA--IADSGNSVTQTAAVIGTAQ- 184
Query: 115 CYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF--ELSHLLAYRRGQ 172
YL+PE+ A+ + D++++GCV+ E+ P F + +AY+ +
Sbjct: 185 -YLSPEQ----------ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVR 233
Query: 173 YDPSQHLEKIPDSG--------IRKMILHMIQLEPELRFSAESYLQ 210
DP IP S + ++L + PE R+ + ++
Sbjct: 234 EDP------IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 14 ETDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
E D YL+ +Y +L + + + LS+ Q+L +K H+ I H DIK +
Sbjct: 81 EEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQ 140
Query: 73 NVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQVA 132
N+L+ S L + DF K G + Y +PE+ A
Sbjct: 141 NILIDSNKTLKIFDFGIAK----ALSETSLTQTNHVLGTVQ--YFSPEQ----------A 184
Query: 133 QDAPLKPSMDIFAVGCVIAELFLEVPFF 160
+ DI+++G V+ E+ + P F
Sbjct: 185 KGEATDECTDIYSIGIVLYEMLVGEPPF 212
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 76 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 135
Query: 72 ENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N L+ L L DF P T + Y+ PE + +
Sbjct: 136 ANFLIVD-GMLKLIDFG-IANQMQPDTTSVVKDSQVGT----VNYMPPEAIKDMSSSREN 189
Query: 132 A-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPDSGI 187
+ + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+ +
Sbjct: 190 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 249
Query: 188 RKMILHMIQLEPELRFS-----AESYLQ 210
+ ++ ++ +P+ R S A Y+Q
Sbjct: 250 QDVLKCCLKRDPKQRISIPELLAHPYVQ 277
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 84/197 (42%), Gaps = 10/197 (5%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 96 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 155
Query: 72 ENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N L+ L L DF P T + Y+ PE + +
Sbjct: 156 ANFLIVD-GMLKLIDFG-IANQMQPDTTSVVKDSQVGT----VNYMPPEAIKDMSSSREN 209
Query: 132 A-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPDSGI 187
+ + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+ +
Sbjct: 210 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 269
Query: 188 RKMILHMIQLEPELRFS 204
+ ++ ++ +P+ R S
Sbjct: 270 QDVLKCCLKRDPKQRIS 286
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLV 76
Q++ A++ CH +G+ H DIK EN+L+
Sbjct: 147 QVVAAIQHCHSRGVVHRDIKDENILI 172
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
+++ A++ H KGI H D+K EN+L+ + ++DF + K P T
Sbjct: 122 EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANXFVGTA 180
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
Y++PE E S D++A+GC+I +L +P F
Sbjct: 181 Q----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 216
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 52 LLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGG 111
+L A+ H +G+ H DIK +++L+T + LSDF + G
Sbjct: 256 VLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFG-----FCAQVSKEVPRRKXLVGT 310
Query: 112 KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLLAYR- 169
++APE + P P +DI+++G ++ E+ E P+F L A +
Sbjct: 311 P--YWMAPE----------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 358
Query: 170 -RGQYDPS-QHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
R P ++L K+ S ++ + ++ +P R +A L++
Sbjct: 359 IRDNLPPRLKNLHKVSPS-LKGFLDRLLVRDPAQRATAAELLKH 401
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
+++ A++ H KGI H D+K EN+L+ + ++DF + K P T
Sbjct: 137 EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANSFVGTA 195
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
Y++PE E S D++A+GC+I +L +P F
Sbjct: 196 Q----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 231
>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|B Chain B, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|C Chain C, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|D Chain D, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
Length = 400
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 51/176 (28%)
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWN---WLYLSDFASFK----------PTYIPYXXXX 101
A++ H I H D+K EN+L TS L L+DF K P Y PY
Sbjct: 173 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY---- 228
Query: 102 XXXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
Y+APE V S D +++G + L P F
Sbjct: 229 --------------YVAPE----------VLGPEKYDKSCDXWSLGVIXYILLCGYPPFY 264
Query: 162 LSHLLA--------YRRGQYD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESY 208
+H LA R GQY+ P+ ++ + ++ +I ++++ EP R + +
Sbjct: 265 SNHGLAISPGXKTRIRXGQYEFPNPEWSEVSEE-VKXLIRNLLKTEPTQRXTITEF 319
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 80 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 139
Query: 72 ENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N L+ L L DF P T + Y+ PE + +
Sbjct: 140 ANFLIVD-GMLKLIDFG-IANQMQPDTTSVVKDSQVGT----VNYMPPEAIKDMSSSREN 193
Query: 132 A-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPDSGI 187
+ + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+ +
Sbjct: 194 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 253
Query: 188 RKMILHMIQLEPELRFS-----AESYLQ 210
+ ++ ++ +P+ R S A Y+Q
Sbjct: 254 QDVLKCCLKRDPKQRISIPELLAHPYVQ 281
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
+++ A++ H KGI H D+K EN+L+ + ++DF + K P T
Sbjct: 137 EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK-VLSPESKQARANXFVGTA 195
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
Y++PE E S D++A+GC+I +L +P F
Sbjct: 196 Q----YVSPELLTEKSA----------CKSSDLWALGCIIYQLVAGLPPF 231
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIP 96
++ + ++ LA+ HE+GI + D+K +NVL+ S + L+D+ K P
Sbjct: 156 RFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 23/182 (12%)
Query: 43 VEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXX 102
+E + L Q+L AV CH + H D+K ENVL+ + ++DF
Sbjct: 111 MEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG--------LSNMMS 162
Query: 103 XXXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFEL 162
T Y APE G + P +DI++ G ++ L F+
Sbjct: 163 DGEFLRTSCGSPNYAAPEVI---SGRLYAG------PEVDIWSCGVILYALLCGTLPFDD 213
Query: 163 SHLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSA------ESYLQNYAAVV 216
H+ + ++ + + + +++HM+Q++P R + E + Q+ + +
Sbjct: 214 EHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYL 273
Query: 217 FP 218
FP
Sbjct: 274 FP 275
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIP 96
++ + ++ LA+ HE+GI + D+K +NVL+ S + L+D+ K P
Sbjct: 124 RFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 174
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 17 KAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLV 76
K+ Y++ + L + + L+L ++ +QLL +K H + H D+K N+LV
Sbjct: 133 KSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLV 192
Query: 77 TSWNWLYLSDFA 88
L + DF
Sbjct: 193 NENCELKIGDFG 204
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 21 LLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN 80
++ +Y N L D + +S E + Q++ AV+ CH I H D+K EN+L+
Sbjct: 91 MVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL 150
Query: 81 WLYLSDFA 88
+ ++DF
Sbjct: 151 NVKIADFG 158
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 142 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 179
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 21 LLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN 80
++ +Y N L D + +S E + Q++ AV+ CH I H D+K EN+L+
Sbjct: 90 MVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL 149
Query: 81 WLYLSDFA 88
+ ++DF
Sbjct: 150 NVKIADFG 157
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 142 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 179
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 17 KAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLV 76
K+ Y++ + L + + L+L ++ +QLL +K H + H D+K N+LV
Sbjct: 132 KSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLV 191
Query: 77 TSWNWLYLSDFA 88
L + DF
Sbjct: 192 NENCELKIGDFG 203
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 21 LLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN 80
++ +Y N L D + +S E + Q++ AV+ CH I H D+K EN+L+
Sbjct: 85 MVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL 144
Query: 81 WLYLSDFA 88
+ ++DF
Sbjct: 145 NVKIADFG 152
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIP 96
++ + ++ LA+ HE+GI + D+K +NVL+ S + L+D+ K P
Sbjct: 109 RFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 159
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 21 LLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN 80
++ +Y N L D + +S E + Q++ AV+ CH I H D+K EN+L+
Sbjct: 81 MVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL 140
Query: 81 WLYLSDFA 88
+ ++DF
Sbjct: 141 NVKIADFG 148
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIP 96
++ + ++ LA+ HE+GI + D+K +NVL+ S + L+D+ K P
Sbjct: 113 RFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKKVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 34/212 (16%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L+ H + V+++A+S++ +F VSAS D ++++W+ + + F L
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT------KDVLSVA 116
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDH-----ISRGLGNVEKYSGISDIKKKDTKEGAIVTLV 1168
+ Q+V G D + +++V +SRG +S ++ + + ++ V
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG----AHTDWVSCVRFSPSLDAPVI--V 170
Query: 1169 NYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGS 1228
+ DN + +WD + LK YV+S+ P G+ S
Sbjct: 171 SGGWDNL-------------VKVWDLATGRLVTDLKG--HTNYVTSVTVSPDGSLCASSD 215
Query: 1229 SRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCL 1260
GV LWDL ++ + + PI ++C
Sbjct: 216 KDGVARLWDLTKGEALS--EMAAGAPINQICF 245
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN 80
L +R+ S E ++ +L+ AV H+ G+ H D+K EN+L T N
Sbjct: 93 LFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDEN 143
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 117 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 154
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 121 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 158
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 133 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 170
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFNS-LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
+T+ YL+ + L RLS + + K+ +L L + H GI + D+K E
Sbjct: 100 QTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPE 159
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + L+DF
Sbjct: 160 NILLDEEGHIKLTDFG 175
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 34.3 bits (77), Expect = 0.52, Method: Composition-based stats.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 15/208 (7%)
Query: 12 WQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKC 71
++ TD+ Y++ + L L + E+K +L AV H+ GI H D+K
Sbjct: 96 YEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKP 155
Query: 72 ENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEMQV 131
N L+ L L DF P T + Y+ PE + +
Sbjct: 156 ANFLIVD-GMLKLIDFG-IANQMQPDXXXVVKDSQVGT----VNYMPPEAIKDMSSSREN 209
Query: 132 A-QDAPLKPSMDIFAVGCVIAEL-FLEVPFFELSHLLAYRRGQYDPSQHLE--KIPDSGI 187
+ + P D++++GC++ + + + PF ++ + ++ DP+ +E IP+ +
Sbjct: 210 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL 269
Query: 188 RKMILHMIQLEPELRFS-----AESYLQ 210
+ ++ ++ +P+ R S A Y+Q
Sbjct: 270 QDVLKCCLKRDPKQRISIPELLAHPYVQ 297
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 121 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 158
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 121 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 158
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 120 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 157
>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase
Ck2alpha With Altered Cosubstrate Specificity
pdb|3JUH|B Chain B, Crystal Structure Of A Mutant Of Human Protein Kinase
Ck2alpha With Altered Cosubstrate Specificity
Length = 335
Score = 34.3 bits (77), Expect = 0.55, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NVL+ + L L D+ Y P
Sbjct: 134 RFYMYEILKALDYCHSMGIMHRDVKPHNVLIDHEHRKLRLIDWG-LAEFYHP-------- 184
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 185 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 233
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 119 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 119 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CHE+ + H DIK EN+L+ L ++DF
Sbjct: 123 ELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFG 160
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CHE+ + H DIK EN+L+ L ++DF
Sbjct: 122 ELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFG 159
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CHE+ + H DIK EN+L+ L ++DF
Sbjct: 122 ELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFG 159
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTS 78
Q+L A++ CH+ I H D+K ENVL+ S
Sbjct: 138 QILEALRYCHDNNIIHRDVKPENVLLAS 165
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 119 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 118 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 155
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 34.3 bits (77), Expect = 0.59, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+++LA++ H+ GI + DIK EN+L+ S + L+DF
Sbjct: 167 EIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFG 204
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 121 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 158
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 117 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 154
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 115 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 152
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 117 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 154
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 121 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 158
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 52 LLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGG 111
+L A+ H +G+ H DIK +++L+T + LSDF + G
Sbjct: 179 VLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFG-----FCAQVSKEVPRRKXLVGT 233
Query: 112 KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLLAYR- 169
++APE + P P +DI+++G ++ E+ E P+F L A +
Sbjct: 234 P--YWMAPE----------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 281
Query: 170 -RGQYDPS-QHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
R P ++L K+ S ++ + ++ +P R +A L++
Sbjct: 282 IRDNLPPRLKNLHKVSPS-LKGFLDRLLVRDPAQRATAAELLKH 324
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 119 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 43 VEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXX 102
+E + L Q+L AV CH + H D+K ENVL+ + ++DF
Sbjct: 111 MEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG-------------- 156
Query: 103 XXXXXXTGGKRL---C----YLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFL 155
+ G+ L C Y APE G + P +DI++ G ++ L
Sbjct: 157 -LSNMMSDGEFLRDSCGSPNYAAPEVI---SGRLYAG------PEVDIWSCGVILYALLC 206
Query: 156 EVPFFELSHLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSA------ESYL 209
F+ H+ + ++ + + + +++HM+Q++P R + E +
Sbjct: 207 GTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFK 266
Query: 210 QNYAAVVFP 218
Q+ + +FP
Sbjct: 267 QDLPSYLFP 275
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 119 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 116 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 1189 IHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQ 1248
I +WD + L+ ++ Y SL P G+ VSGS + +WDLR + Q
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKLVSGSGDRTVRIWDLR------TGQ 198
Query: 1249 YSQVCPIEK--MCLFVPPPNAAVSTTARPLIYVAAGC--NEVSLWNAENGSCHQVLRTAN 1304
S IE + V P + Y+AAG V +W++E G + L + N
Sbjct: 199 CSLTLSIEDGVTTVAVSPGDGK---------YIAAGSLDRAVRVWDSETGFLVERLDSEN 249
Query: 1305 YDG 1307
G
Sbjct: 250 ESG 252
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1044 WRPRGILVAHLQEHCSAV-NEIAISHDHSFFVSASDDSTVKVWDSRKLEKDIS 1095
W+ G LV +LQ H ++V + +S + F++AS D T+K+W + K+ K S
Sbjct: 129 WK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFS 180
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 113 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 150
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 58 QCHEKGICHGDIKCENVLVTSWNWLYLSDFA---SFKPTYIPYXXXXXXXXXXXTGGKRL 114
+ H+ I H D K +NVL+ S L+DF F+P P G +R
Sbjct: 138 EGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPP------GDTHGQVGTRR- 190
Query: 115 CYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
Y+APE G + +DA L+ +D++A+G V+ EL
Sbjct: 191 -YMAPEVLE---GAINFQRDAFLR--IDMYAMGLVLWEL 223
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 52 LLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGG 111
+L A+ H +G+ H DIK +++L+T + LSDF + G
Sbjct: 136 VLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFG-----FCAQVSKEVPRRKXLVGT 190
Query: 112 KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLLAYR- 169
++APE + P P +DI+++G ++ E+ E P+F L A +
Sbjct: 191 P--YWMAPE----------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 238
Query: 170 -RGQYDPS-QHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
R P ++L K+ S ++ + ++ +P R +A L++
Sbjct: 239 IRDNLPPRLKNLHKVSPS-LKGFLDRLLVRDPAQRATAAELLKH 281
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.5 bits (75), Expect = 0.82, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 108
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 1165
+ + + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 167
Query: 1166 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1223
T+++ D + W N N + ++A I +++L P G
Sbjct: 168 TIISAGNDKM-------------VKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1224 FVSGSSRGVLTLWDL 1238
S G + LW+L
Sbjct: 211 IASAGKDGEIMLWNL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.5 bits (75), Expect = 0.82, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 49 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 102
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 1165
+ + + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 103 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 161
Query: 1166 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1223
T+++ D + W N N + ++A I +++L P G
Sbjct: 162 TIISAGNDKM-------------VKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 204
Query: 1224 FVSGSSRGVLTLWDL 1238
S G + LW+L
Sbjct: 205 IASAGKDGEIMLWNL 219
>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|F Chain F, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 305
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 11 FWQETDKAAYLLRQYFFNSLRDRLSTPP--FLSLVEKKWLAFQLLLAVKQCHEKGICHGD 68
+ E + Y++ +Y +++ L + P + + QL+ ++ H +GI H D
Sbjct: 75 LYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKD 134
Query: 69 IKCENVLVTSWNWLYLS 85
IK N+L+T+ L +S
Sbjct: 135 IKPGNLLLTTGGTLKIS 151
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 120 ELANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFG 157
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLV 76
L +R+ S E ++ QL+ V CH +CH D+K EN L+
Sbjct: 102 LFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL 148
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 52 LLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGG 111
+L A+ H +G+ H DIK +++L+T + LSDF + G
Sbjct: 134 VLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFG-----FCAQVSKEVPRRKXLVGT 188
Query: 112 KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLLAYR- 169
++APE + P P +DI+++G ++ E+ E P+F L A +
Sbjct: 189 P--YWMAPE----------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 236
Query: 170 -RGQYDPS-QHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
R P ++L K+ S ++ + ++ +P R +A L++
Sbjct: 237 IRDNLPPRLKNLHKVSPS-LKGFLDRLLVRDPAQRATAAELLKH 279
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 33.5 bits (75), Expect = 0.88, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
+T+ YL+ + L RLS + + K+ +L LA+ H GI + D+K E
Sbjct: 97 QTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPE 156
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + L+DF
Sbjct: 157 NILLDEEGHIKLTDFG 172
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 33.5 bits (75), Expect = 0.88, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
+T+ YL+ + L RLS + + K+ +L LA+ H GI + D+K E
Sbjct: 96 QTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPE 155
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + L+DF
Sbjct: 156 NILLDEEGHIKLTDFG 171
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L ++DF
Sbjct: 120 ELANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFG 157
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 33.5 bits (75), Expect = 0.89, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 14 ETDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCE 72
+T+ YL+ + L RLS + + K+ +L LA+ H GI + D+K E
Sbjct: 96 QTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPE 155
Query: 73 NVLVTSWNWLYLSDFA 88
N+L+ + L+DF
Sbjct: 156 NILLDEEGHIKLTDFG 171
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLV 76
L +R+ S E ++ QL+ V CH +CH D+K EN L+
Sbjct: 102 LFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL 148
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLV 76
L +R+ S E ++ QL+ V CH +CH D+K EN L+
Sbjct: 102 LFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL 148
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 43 VEKKWLAF---QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
++++W+A+ ++L + H+ + H DIK +NVL+T + L DF
Sbjct: 126 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFG 174
>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph
8.5
Length = 328
Score = 33.5 bits (75), Expect = 0.92, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 132 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 182
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 183 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 231
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 27/154 (17%)
Query: 12 WQETDKAAYLLR-----QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICH 66
+Q DK ++L + F++ R+R P ++ A ++ A+ H I +
Sbjct: 108 FQTADKLYFVLDYINGGELFYHLQRERCFLEP-----RARFYAAEIASALGYLHSLNIVY 162
Query: 67 GDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHG 126
D+K EN+L+ S + L+DF K T YLAPE
Sbjct: 163 RDLKPENILLDSQGHIVLTDFGLCKEN-------IEHNSTTSTFCGTPEYLAPE------ 209
Query: 127 GEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160
V P ++D + +G V+ E+ +P F
Sbjct: 210 ----VLHKQPYDRTVDWWCLGAVLYEMLYGLPPF 239
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 30 LRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLV 76
L +R+ S E ++ QL+ V CH +CH D+K EN L+
Sbjct: 101 LFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL 147
>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human
Protein Kinase Ck2
Length = 329
Score = 33.5 bits (75), Expect = 0.94, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 134 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 184
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 185 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 233
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 6 CVHKKFWQETDKAAYLLR-----QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLL 54
C++K E Y R QY F L DR+ + + + QL+
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
V H GI H DIK EN+L+ + L +SDF
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 149
>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With
The Catalytic Subunit Of Protein Kinase Ck2
pdb|3C13|A Chain A, Low Ph-Value Crystal Structure Of Emodin In Complex With
The Catalytic Subunit Of Protein Kinase Ck2
pdb|3FWQ|A Chain A, Inactive Conformation Of Human Protein Kinase Ck2
Catalytic Subunit
pdb|3FWQ|B Chain B, Inactive Conformation Of Human Protein Kinase Ck2
Catalytic Subunit
pdb|3RPS|A Chain A, Structure Of Human Ck2alpha In Complex With The
Atp-Competitive Inhibitor
3-(4,5,6,7-Tetrabromo-1h-Benzotriazol-1-Yl)propan-1-Ol
pdb|3RPS|B Chain B, Structure Of Human Ck2alpha In Complex With The
Atp-Competitive Inhibitor
3-(4,5,6,7-Tetrabromo-1h-Benzotriazol-1-Yl)propan-1-Ol
pdb|3U9C|A Chain A, Structure Of A C-terminal Deletion Mutant Of Human Protein
Kinase Ck2 Catalytic Subunit With The Atp-competitive
Inhibitor Resorufin
pdb|3U9C|B Chain B, Structure Of A C-terminal Deletion Mutant Of Human Protein
Kinase Ck2 Catalytic Subunit With The Atp-competitive
Inhibitor Resorufin
pdb|4FBX|A Chain A, Complex Structure Of Human Protein Kinase Ck2 Catalytic
Subunit Crystallized In The Presence Of A Bisubstrate
Inhibitor
Length = 335
Score = 33.5 bits (75), Expect = 0.97, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 134 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 184
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 185 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 233
>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human
Protein Kinase Ck2 Catalytic Subunit
pdb|2PVR|A Chain A, Crystal Structure Of The Catalytic Subunit Of Protein
Kinase Ck2 (c- Terminal Deletion Mutant 1-335) In
Complex With Two Sulfate Ions
Length = 334
Score = 33.5 bits (75), Expect = 0.98, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 133 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 183
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 184 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 232
>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
pdb|4DGL|D Chain D, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
Length = 335
Score = 33.5 bits (75), Expect = 0.99, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 134 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 184
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 185 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 233
>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn
Length = 330
Score = 33.5 bits (75), Expect = 0.99, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 133 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 183
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 184 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 232
>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane
Derivative Inhibitor (Cpa)
pdb|3MB7|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane
Derivative Inhibitor (Amr)
pdb|3OWJ|A Chain A, Human Ck2 Catalytic Domain In Complex With A
Pyridocarbazole Derivative Inhibitor
pdb|3OWK|A Chain A, Human Ck2 Catalytic Domain In Complex With A
Benzopyridoindole Derivative Inhibitor
pdb|3OWL|A Chain A, Human Ck2 Catalytic Domain In Complex With A
Benzopyridoindole Derivative Inhibitor
Length = 331
Score = 33.5 bits (75), Expect = 0.99, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 134 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 184
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 185 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 233
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 33.5 bits (75), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 6 CVHKKFWQETDKAAYLLR-----QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLL 54
C++K E Y R QY F L DR+ + + + QL+
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
V H GI H DIK EN+L+ + L +SDF
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 150
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 51/206 (24%)
Query: 16 DKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVL 75
DK +++L L LS S + ++ A +++L ++ H + + + D+K N+L
Sbjct: 264 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANIL 323
Query: 76 VTSWNWLYLS------DFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM 129
+ + +S DF+ KP T G Y+APE +
Sbjct: 324 LDEHGHVRISDLGLACDFSKKKP-----------HASVGTHG----YMAPEVL-----QK 363
Query: 130 QVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLLAYRRGQYDPSQHLEKIPDSGIRK 189
VA D+ S D F++GC++ +L RG QH K I +
Sbjct: 364 GVAYDS----SADWFSLGCMLFKLL---------------RGHSPFRQHKTK-DKHEIDR 403
Query: 190 MILHMI-----QLEPELRFSAESYLQ 210
M L M PELR E LQ
Sbjct: 404 MTLTMAVELPDSFSPELRSLLEGLLQ 429
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 6 CVHKKFWQETDKAAYLLR-----QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLL 54
C++K E Y R QY F L DR+ + + + QL+
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
V H GI H DIK EN+L+ + L +SDF
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 150
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 6 CVHKKFWQETDKAAYLLR-----QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLL 54
C++K E Y R QY F L DR+ + + + QL+
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
V H GI H DIK EN+L+ + L +SDF
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 150
>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human
Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D-
Ribofuranosylbenzimidazole
pdb|3H30|B Chain B, Crystal Structure Of The Catalytic Subunit Of Human
Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D-
Ribofuranosylbenzimidazole
Length = 334
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 134 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 184
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 185 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 233
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 6 CVHKKFWQETDKAAYLLR-----QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLL 54
C++K E Y R QY F L DR+ + + + QL+
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 55 AVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
V H GI H DIK EN+L+ + L +SDF
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 150
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 51/206 (24%)
Query: 16 DKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVL 75
DK +++L L LS S + ++ A +++L ++ H + + + D+K N+L
Sbjct: 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANIL 324
Query: 76 VTSWNWLYLS------DFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM 129
+ + +S DF+ KP T G Y+APE +
Sbjct: 325 LDEHGHVRISDLGLACDFSKKKP-----------HASVGTHG----YMAPEVL-----QK 364
Query: 130 QVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLLAYRRGQYDPSQHLEKIPDSGIRK 189
VA D+ S D F++GC++ +L RG QH K I +
Sbjct: 365 GVAYDS----SADWFSLGCMLFKLL---------------RGHSPFRQHKTK-DKHEIDR 404
Query: 190 MILHMI-----QLEPELRFSAESYLQ 210
M L M PELR E LQ
Sbjct: 405 MTLTMAVELPDSFSPELRSLLEGLLQ 430
>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945
pdb|3NGA|B Chain B, Human Ck2 Catalytic Domain In Complex With Cx-4945
pdb|3U4U|A Chain A, Casein Kinase 2 In Complex With Az-Inhibitor
Length = 333
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNW-LYLSDFASFKPTYIPYXXXXXXX 104
++ +++L A+ CH GI H D+K NV++ + L L D+ Y P
Sbjct: 134 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHP-------- 184
Query: 105 XXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL-FLEVPFF 160
G+ R+++ G E+ V S+D++++GC++A + F + PFF
Sbjct: 185 ------GQEYNVRVASRYFK-GPELLVDYQM-YDYSLDMWSLGCMLASMIFRKEPFF 233
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 51/206 (24%)
Query: 16 DKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVL 75
DK +++L L LS S + ++ A +++L ++ H + + + D+K N+L
Sbjct: 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANIL 324
Query: 76 VTSWNWLYLS------DFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM 129
+ + +S DF+ KP T G Y+APE +
Sbjct: 325 LDEHGHVRISDLGLACDFSKKKP-----------HASVGTHG----YMAPEVL-----QK 364
Query: 130 QVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLLAYRRGQYDPSQHLEKIPDSGIRK 189
VA D+ S D F++GC++ +L RG QH K I +
Sbjct: 365 GVAYDS----SADWFSLGCMLFKLL---------------RGHSPFRQHKTK-DKHEIDR 404
Query: 190 MILHMI-----QLEPELRFSAESYLQ 210
M L M PELR E LQ
Sbjct: 405 MTLTMAVELPDSFSPELRSLLEGLLQ 430
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 51/206 (24%)
Query: 16 DKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVL 75
DK +++L L LS S + ++ A +++L ++ H + + + D+K N+L
Sbjct: 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANIL 324
Query: 76 VTSWNWLYLS------DFASFKPTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM 129
+ + +S DF+ KP T G Y+APE +
Sbjct: 325 LDEHGHVRISDLGLACDFSKKKP-----------HASVGTHG----YMAPEVL-----QK 364
Query: 130 QVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELSHLLAYRRGQYDPSQHLEKIPDSGIRK 189
VA D+ S D F++GC++ +L RG QH K I +
Sbjct: 365 GVAYDS----SADWFSLGCMLFKLL---------------RGHSPFRQHKTK-DKHEIDR 404
Query: 190 MILHMI-----QLEPELRFSAESYLQ 210
M L M PELR E LQ
Sbjct: 405 MTLTMAVELPDSFSPELRSLLEGLLQ 430
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
+L A+ H +G+ H DIK +++L+T + LSDF +
Sbjct: 127 LAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFG-----FCAQVSKEVPRRKXLV 181
Query: 110 GGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLLAY 168
G ++APE + P P +DI+++G ++ E+ E P+F L A
Sbjct: 182 GTP--YWMAPE----------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM 229
Query: 169 R--RGQYDPS-QHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ R P ++L K+ S ++ + ++ +P R +A L++
Sbjct: 230 KMIRDNLPPRLKNLHKVSPS-LKGFLDRLLVRDPAQRATAAELLKH 274
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 50 FQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXT 109
+L A+ H +G+ H DIK +++L+T + LSDF +
Sbjct: 123 LAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFG-----FCAQVSKEVPRRKXLV 177
Query: 110 GGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLLAY 168
G ++APE + P P +DI+++G ++ E+ E P+F L A
Sbjct: 178 GTP--YWMAPE----------LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM 225
Query: 169 R--RGQYDPS-QHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
+ R P ++L K+ S ++ + ++ +P R +A L++
Sbjct: 226 KMIRDNLPPRLKNLHKVSPS-LKGFLDRLLVRDPAQRATAAELLKH 270
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L+ H + + + D VSAS D + +WDS K H R+ M
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 112
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 1173
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 165
Query: 1174 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1233
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 166 N----QIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1267
LWD+R + ++ + I +C F P NA
Sbjct: 220 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 251
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 21/89 (23%)
Query: 21 LLRQYFFNSLRDRLSTPP-------------FLSLVEKKWLAF--------QLLLAVKQC 59
LLR L D ++TP F +VEKK + Q++ A++ C
Sbjct: 65 LLRHPHIIKLYDVITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYC 124
Query: 60 HEKGICHGDIKCENVLVTSWNWLYLSDFA 88
H I H D+K EN+L+ + ++DF
Sbjct: 125 HRHKIVHRDLKPENLLLDDNLNVKIADFG 153
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 81/193 (41%), Gaps = 21/193 (10%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L+ H +V +I+ H S S D T+K+WD + F T H
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ------GFECIRTMHGHDHNVSSVS 199
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKK--KDTKEGAIVTLVNYN 1171
++ + +V + D I M+ V + V+ ++G + + + ++G TL+
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEV----QTGYCVKTFTGHREWVRMVRPNQDG---TLIASC 252
Query: 1172 TDNCASHMFMYSTQNCGIHLWDTRS--NSNTW----TLKAIPEEGYVSSLVTGPCGNWFV 1225
+++ +++ +T+ C L + R +W + +I E + +G G + +
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312
Query: 1226 SGSSRGVLTLWDL 1238
SGS + +WD+
Sbjct: 313 SGSRDKTIKMWDV 325
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 1044 WRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
W PR L H S V + S VSAS+D+T+KVWD
Sbjct: 94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 39/150 (26%)
Query: 411 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 455
K G+ L+ LL +C + +PH YR AA++ S L + ++L
Sbjct: 346 KAAGVCLM--LLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GSILEGPEPNQL 402
Query: 456 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 508
+ + +P +I ++ DP+ +VR T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 509 MLPD----DPEESVRICYASNIAKLALTAY 534
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
QL+ V H GI H DIK EN+L+ + L +SDF
Sbjct: 112 QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 149
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
QL+ V H GI H DIK EN+L+ + L +SDF
Sbjct: 112 QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 149
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
QL+ V H GI H DIK EN+L+ + L +SDF
Sbjct: 113 QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFG 150
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In
Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L+ H + + + D VSAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 1173
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 1174 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1233
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1267
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And
Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In
Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L+ H + + + D VSAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 1173
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 1174 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1233
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1267
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 23/181 (12%)
Query: 44 EKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXX 103
E + L Q+L V CH + H D+K ENVL+ + ++DF +
Sbjct: 117 ESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG------LSNMMSDGE 170
Query: 104 XXXXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFELS 163
G Y APE G + P +DI++ G ++ L F+
Sbjct: 171 FLRXSCGSPN--YAAPEVI---SGRLYAG------PEVDIWSSGVILYALLCGTLPFDDD 219
Query: 164 HLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSA------ESYLQNYAAVVF 217
H+ + D + + + + ++ HM+Q++P R + E + Q+ +F
Sbjct: 220 HVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLF 279
Query: 218 P 218
P
Sbjct: 280 P 280
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 78 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 137
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 138 ERDNLKISDFG 148
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 80 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 139
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 140 ERDNLKISDFG 150
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
++ +A+ H+KGI + D+K EN+++ + L+DF
Sbjct: 129 EISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFG 166
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
++ +A+ H+KGI + D+K EN+++ + L+DF
Sbjct: 129 EISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFG 166
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|B Chain B, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|C Chain C, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|D Chain D, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
Length = 432
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 26/220 (11%)
Query: 5 PCVHKKFWQETDKA-AYLLRQYFFNSLRDRLSTPPFLSL-VEKKWLAFQLLLAVKQCHEK 62
P V + F E D+ Y+ + +L++ + F L +E L Q + H
Sbjct: 78 PNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL 137
Query: 63 GICHGDIKCENVLVTSWNW-----LYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRLCYL 117
I H D+K N+L++ N +SDF K + T G ++
Sbjct: 138 NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEG----WI 193
Query: 118 APERFYEHGGEMQVAQDAPLKP--SMDIFAVGCVIAELFLE--VPFFE-LSHLLAYRRGQ 172
APE +++D P ++DIF+ GCV + E PF + L G
Sbjct: 194 APE---------MLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGA 244
Query: 173 YD-PSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
H EK D R++I MI ++P+ R SA+ L++
Sbjct: 245 CSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH 284
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFAS 89
++++A+ H G H DIK +N+L+ + L+DF S
Sbjct: 170 EIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGS 208
>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
Length = 298
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 49 AFQLLLAVKQCHEKGICHGDIKCENVLV-----TSWNWLYLSDFASFK-------PTYIP 96
A Q+L V+ HEK + + DIK +N L+ + N +Y+ DF K +IP
Sbjct: 112 AKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIP 171
Query: 97 Y 97
Y
Sbjct: 172 Y 172
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 80 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 139
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 140 ERDNLKISDFG 150
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 18/183 (9%)
Query: 1057 HCSAVNEIAI-SHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMML 1115
H + V ++I S + + F+S S D+TV++WD R I+ R+ TYH
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLR-----ITSRAVRTYHGHEGDINSVKFF 258
Query: 1116 RHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNC 1175
+ G+ DG +F + R ++ Y+ D ++ E IVT V ++
Sbjct: 259 PDGQRFGTGSDDGTCRLFDM----RTGHQLQVYNREPD---RNDNELPIVTSVAFSI--- 308
Query: 1176 ASHMFMYSTQNCGIHLWDTRSNSNTWTLKAI--PEEGYVSSLVTGPCGNWFVSGSSRGVL 1233
+ + N ++WDT L + EG +S L G+ +GS L
Sbjct: 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368
Query: 1234 TLW 1236
+W
Sbjct: 369 KIW 371
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 14/188 (7%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD-SRKLEKDISF-RSRLTYHLEGSRALC 1111
++ HC V E A + + DS +++ S + ++D + SR+ +G + C
Sbjct: 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 1112 TMMLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYN 1171
+ +++ G+ D ++ V R IS I + G +++ +
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQR----------IS-IFGSEFPSGHTADVLSLS 212
Query: 1172 TDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRG 1231
++ ++MF+ + + + LWD R S EG ++S+ P G F +GS G
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRA-VRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Query: 1232 VLTLWDLR 1239
L+D+R
Sbjct: 272 TCRLFDMR 279
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
Length = 297
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 49 AFQLLLAVKQCHEKGICHGDIKCENVLV-----TSWNWLYLSDFASFK-------PTYIP 96
A Q+L V+ HEK + + DIK +N L+ + N +Y+ DF K +IP
Sbjct: 111 AKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIP 170
Query: 97 Y 97
Y
Sbjct: 171 Y 171
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 80 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 139
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 140 ERDNLKISDFG 150
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 24 QYFF------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77
QY F L DR+ + + + QL+ V H GI H DIK EN+L+
Sbjct: 79 QYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD 138
Query: 78 SWNWLYLSDFA 88
+ L +SDF
Sbjct: 139 ERDNLKISDFG 149
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L +++F
Sbjct: 119 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIANFG 156
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+L A+ CH K + H DIK EN+L+ S L +++F
Sbjct: 118 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIANFG 155
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 81/195 (41%), Gaps = 28/195 (14%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 108
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 1165
+ + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 109 DVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 167
Query: 1166 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1223
T+++ D + W N N + ++A I +++L P G
Sbjct: 168 TIISAGNDK-------------XVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1224 FVSGSSRGVLTLWDL 1238
S G + LW+L
Sbjct: 211 IASAGKDGEIXLWNL 225
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 411 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 455
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 346 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 402
Query: 456 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 508
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 509 MLPD----DPEESVRICYASNIAKLALTAY 534
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 411 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 455
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 346 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 402
Query: 456 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 508
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 509 MLPD----DPEESVRICYASNIAKLALTAY 534
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 753 RRQPASLASVKALLSCLKPPVSRE-VFYQVLENARSSDMLERQRKIWYNTSSQSK 806
+ +P L + + +LSCLKP ++ V+ VLEN + + + R W N + K
Sbjct: 28 KNEPEFLQAFEEVLSCLKPVFKKDNVYIGVLENIAEPERVIQFRVPWINDKGEHK 82
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 411 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 455
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 346 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 402
Query: 456 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 508
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 454
Query: 509 MLPD----DPEESVRICYASNIAKLALTAY 534
L + +P + +C+A + LA AY
Sbjct: 455 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 482
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 24 QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLY 83
+ FF+ R+R+ T ++ +++ A++ H + + + DIK EN+++ +
Sbjct: 91 ELFFHLSRERVFTEE-----RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145
Query: 84 LSDFASFKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKP 139
++DF K K C YLAPE V +D
Sbjct: 146 ITDFGLCKEG-----------ISDGATMKXFCGTPEYLAPE----------VLEDNDYGR 184
Query: 140 SMDIFAVGCVIAELFL-EVPFFELSH 164
++D + +G V+ E+ +PF+ H
Sbjct: 185 AVDWWGLGVVMYEMMCGRLPFYNQDH 210
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 24 QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLY 83
+ FF+ R+R+ T ++ +++ A++ H + + + DIK EN+++ +
Sbjct: 91 ELFFHLSRERVFTEE-----RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145
Query: 84 LSDFASFKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKP 139
++DF K K C YLAPE V +D
Sbjct: 146 ITDFGLCKEG-----------ISDGATMKXFCGTPEYLAPE----------VLEDNDYGR 184
Query: 140 SMDIFAVGCVIAELFL-EVPFFELSH 164
++D + +G V+ E+ +PF+ H
Sbjct: 185 AVDWWGLGVVMYEMMCGRLPFYNQDH 210
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 24 QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLY 83
+ FF+ R+R+ T ++ +++ A++ H + + + DIK EN+++ +
Sbjct: 94 ELFFHLSRERVFTEE-----RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 148
Query: 84 LSDFASFKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKP 139
++DF K K C YLAPE V +D
Sbjct: 149 ITDFGLCKEG-----------ISDGATMKTFCGTPEYLAPE----------VLEDNDYGR 187
Query: 140 SMDIFAVGCVIAELFL-EVPFFELSH 164
++D + +G V+ E+ +PF+ H
Sbjct: 188 AVDWWGLGVVMYEMMCGRLPFYNQDH 213
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 24 QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLY 83
+ FF+ R+R+ T ++ +++ A++ H + + + DIK EN+++ +
Sbjct: 91 ELFFHLSRERVFTEE-----RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145
Query: 84 LSDFASFKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKP 139
++DF K K C YLAPE V +D
Sbjct: 146 ITDFGLCK-----------EGISDGATMKTFCGTPEYLAPE----------VLEDNDYGR 184
Query: 140 SMDIFAVGCVIAELFL-EVPFFELSH 164
++D + +G V+ E+ +PF+ H
Sbjct: 185 AVDWWGLGVVMYEMMCGRLPFYNQDH 210
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 24 QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLY 83
+ FF+ R+R+ T ++ +++ A++ H + + + DIK EN+++ +
Sbjct: 91 ELFFHLSRERVFTEE-----RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145
Query: 84 LSDFASFKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKP 139
++DF K K C YLAPE V +D
Sbjct: 146 ITDFGLCKEG-----------ISDGATMKTFCGTPEYLAPE----------VLEDNDYGR 184
Query: 140 SMDIFAVGCVIAELFL-EVPFFELSH 164
++D + +G V+ E+ +PF+ H
Sbjct: 185 AVDWWGLGVVMYEMMCGRLPFYNQDH 210
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 24 QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLY 83
+ FF+ R+R+ T ++ +++ A++ H + + + DIK EN+++ +
Sbjct: 91 ELFFHLSRERVFTEE-----RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145
Query: 84 LSDFASFKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKP 139
++DF K K C YLAPE V +D
Sbjct: 146 ITDFGLCKEG-----------ISDGATMKXFCGTPEYLAPE----------VLEDNDYGR 184
Query: 140 SMDIFAVGCVIAELFL-EVPFFELSH 164
++D + +G V+ E+ +PF+ H
Sbjct: 185 AVDWWGLGVVMYEMMCGRLPFYNQDH 210
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 24 QYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLY 83
+ FF+ R+R+ T ++ +++ A++ H + + + DIK EN+++ +
Sbjct: 96 ELFFHLSRERVFTEE-----RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 150
Query: 84 LSDFASFKPTYIPYXXXXXXXXXXXTGGKRLC----YLAPERFYEHGGEMQVAQDAPLKP 139
++DF K K C YLAPE V +D
Sbjct: 151 ITDFGLCKEG-----------ISDGATMKXFCGTPEYLAPE----------VLEDNDYGR 189
Query: 140 SMDIFAVGCVIAELFL-EVPFFELSH 164
++D + +G V+ E+ +PF+ H
Sbjct: 190 AVDWWGLGVVMYEMMCGRLPFYNQDH 215
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 411 KCEGIVLIASLLCSCVRNVKLPH---------------YRRAAILLLKSSSLFIDDEDRL 455
K G+ L+ LL +C + +PH YR AA++ L + +L
Sbjct: 221 KAAGVCLM--LLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF-GCILEGPEPSQL 277
Query: 456 Q----RVLPHVIAMLSDPAAIVRCAALET---LCDILPLVRNFPPSDAKIFPEYILPMLS 508
+ + +P +I ++ DP+ +VR A T +C++LP +A I Y+ P+L
Sbjct: 278 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP--------EAAINDVYLAPLLQ 329
Query: 509 MLPD----DPEESVRICYASNIAKLALTAY 534
L + +P + +C+A + LA AY
Sbjct: 330 CLIEGLSAEPRVASNVCWA--FSSLAEAAY 357
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L+ H + + + D +SAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 1173
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 1174 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1233
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1267
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++ A +++ A+ H+KGI + D+K +NVL+ L+DF K
Sbjct: 127 RFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC-------NGV 179
Query: 106 XXXTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAEL 153
T Y+APE + Q+ P++D +A+G ++ E+
Sbjct: 180 TTATFCGTPDYIAPE----------ILQEMLYGPAVDWWAMGVLLYEM 217
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The
Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 24/214 (11%)
Query: 1054 LQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTM 1113
L+ H + + + D +SAS D + +WDS K H R+ M
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------VHAIPLRSSWVM 101
Query: 1114 MLRHSAQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTD 1173
++ AC G+ ++ S+ ++ GNV + ++ ++ + D
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-------VSRELAGHTGYLSCCRFLDD 154
Query: 1174 NCASHMFMYSTQNCGIHLWDTRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVL 1233
N + S+ + LWD + T G V SL P FVSG+
Sbjct: 155 N----QIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 1234 TLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNA 1267
LWD+R + ++ + I +C F P NA
Sbjct: 209 KLWDVREGMCRQTFTGHES-DINAICFF-PNGNA 240
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 73 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 132
Query: 72 ENVLVTSWNWLYLSDFA 88
N+LV+ ++DF
Sbjct: 133 ANILVSDTLSCKIADFG 149
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWN--WLYLSDFASFKPTY 94
Q+ A+ H +GICH DIK EN L ++ + L DF K Y
Sbjct: 176 QIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFY 221
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 32 DRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFK 91
DR T P + +V + Q+L A+ H K I H D+K NVL+T + L+DF
Sbjct: 111 DRGLTEPQIQVVCR-----QMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFG--- 162
Query: 92 PTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM-QVAQDAPLKPSMDIFAVGCVI 150
T KR ++ + M + +D P DI+++G +
Sbjct: 163 ----------VSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITL 212
Query: 151 AELF-LEVPFFELS 163
E+ +E P EL+
Sbjct: 213 IEMAQIEPPHHELN 226
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Query: 52 LLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGG 111
+L A+ H +G+ H DIK +++L+T + LSDF + G
Sbjct: 150 VLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFG-----FCAQISKDVPKRKXLVGT 204
Query: 112 KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELF-LEVPFFELSHLLAYRR 170
++APE V + +DI+++G ++ E+ E P+F S + A +R
Sbjct: 205 P--YWMAPE----------VISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKR 252
Query: 171 GQYDPSQHLEKIPDSG--IRKMILHMIQLEPELRFSAESYLQN 211
+ P L+ +R + M+ +P+ R +A+ L +
Sbjct: 253 LRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++L +Q+L +K H G+ H D+K N+ V L + DF
Sbjct: 147 QYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFG-----------LARHAD 195
Query: 106 XXXTGG-KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
TG Y APE M Q ++DI++VGC++AE+ F+
Sbjct: 196 AEMTGYVVTRWYRAPEVILSW---MHYNQ------TVDIWSVGCIMAEMLTGKTLFK 243
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 494 SDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFL 537
SD KI P+Y P+L++LP + S ++ Y + L YG L
Sbjct: 812 SDDKILPKYENPILAVLPKKSDLSPKVTYRQAGDRYILVEYGEL 855
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 28 NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTS 78
L DR+ + S + Q+L AV HE GI H D+K EN+L +
Sbjct: 133 GELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYAT 183
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 46 KWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXX 105
++L +Q+L +K H G+ H D+K N+ V L + DF
Sbjct: 129 QYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFG-----------LARHAD 177
Query: 106 XXXTGG-KRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE 161
TG Y APE M Q ++DI++VGC++AE+ F+
Sbjct: 178 AEMTGYVVTRWYRAPEVIL---SWMHYNQ------TVDIWSVGCIMAEMLTGKTLFK 225
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 86 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 145
Query: 72 ENVLVTSWNWLYLSDFA 88
N+LV+ ++DF
Sbjct: 146 ANILVSDTLSCKIADFG 162
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSR 1088
GI L H V+++A+S ++ F +S+S D T+++WD R
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR 106
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 78 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 137
Query: 72 ENVLVTSWNWLYLSDFA 88
N+LV+ ++DF
Sbjct: 138 ANILVSDTLSCKIADFG 154
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 32 DRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFK 91
DR T P + +V + Q+L A+ H K I H D+K NVL+T + L+DF
Sbjct: 103 DRGLTEPQIQVVCR-----QMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFG--- 154
Query: 92 PTYIPYXXXXXXXXXXXTGGKRLCYLAPERFYEHGGEM-QVAQDAPLKPSMDIFAVGCVI 150
T KR ++ + M + +D P DI+++G +
Sbjct: 155 ----------VSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITL 204
Query: 151 AELF-LEVPFFELS 163
E+ +E P EL+
Sbjct: 205 IEMAQIEPPHHELN 218
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 88 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 147
Query: 72 ENVLVTSWNWLYLSDFA 88
N+LV+ ++DF
Sbjct: 148 ANILVSDTLSCKIADFG 164
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 87 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 146
Query: 72 ENVLVTSWNWLYLSDFA 88
N+LV+ ++DF
Sbjct: 147 ANILVSDTLSCKIADFG 163
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 78 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 137
Query: 72 ENVLVTSWNWLYLSDFA 88
N+LV+ ++DF
Sbjct: 138 ANILVSDTLSCKIADFG 154
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 84 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 143
Query: 72 ENVLVTSWNWLYLSDFA 88
N+LV+ ++DF
Sbjct: 144 ANILVSDTLSCKIADFG 160
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWD 1086
G L+ L+ H + + S D V+ASDD +K++D
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 79 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 138
Query: 72 ENVLVT 77
N+LV+
Sbjct: 139 ANILVS 144
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 80 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 139
Query: 72 ENVLVT 77
N+LV+
Sbjct: 140 ANILVS 145
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 78 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 137
Query: 72 ENVLVT 77
N+LV+
Sbjct: 138 ANILVS 143
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 42/216 (19%)
Query: 17 KAAYLLRQYFF--------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGD 68
K Y +FF L D L+ LS E + + LL + H+ I H D
Sbjct: 90 KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRD 149
Query: 69 IKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL-------CYLAPER 121
+K EN+L+ + L+DF F P G++L YLAPE
Sbjct: 150 LKPENILLDDDMNIKLTDFG-FSCQLDP--------------GEKLRSVCGTPSYLAPEI 194
Query: 122 FYEHGGEMQVAQDAP-LKPSMDIFAVGCVIAELFL-EVPFFELSHLLAYR---RGQYD-P 175
E + + P +D+++ G ++ L PF+ +L R G Y
Sbjct: 195 I-----ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFG 249
Query: 176 SQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
S + D+ ++ ++ + ++P+ R++AE L +
Sbjct: 250 SPEWDDYSDT-VKDLVSRFLVVQPQKRYTAEEALAH 284
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 83 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 142
Query: 72 ENVLVT 77
N+LV+
Sbjct: 143 ANILVS 148
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 84 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 143
Query: 72 ENVLVT 77
N+LV+
Sbjct: 144 ANILVS 149
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 15 TDKAAYLLRQYFFN-SLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGDIKC 71
T + Y++ +Y N SL D L TP + L K L A Q+ + E+ H D++
Sbjct: 78 TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 137
Query: 72 ENVLVT 77
N+LV+
Sbjct: 138 ANILVS 143
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 42/216 (19%)
Query: 17 KAAYLLRQYFF--------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGD 68
K Y +FF L D L+ LS E + + LL + H+ I H D
Sbjct: 90 KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRD 149
Query: 69 IKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL-------CYLAPER 121
+K EN+L+ + L+DF F P G++L YLAPE
Sbjct: 150 LKPENILLDDDMNIKLTDFG-FSCQLDP--------------GEKLREVCGTPSYLAPEI 194
Query: 122 FYEHGGEMQVAQDAP-LKPSMDIFAVGCVIAELFL-EVPFFELSHLLAYR---RGQYD-P 175
E + + P +D+++ G ++ L PF+ +L R G Y
Sbjct: 195 I-----ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFG 249
Query: 176 SQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
S + D+ ++ ++ + ++P+ R++AE L +
Sbjct: 250 SPEWDDYSDT-VKDLVSRFLVVQPQKRYTAEEALAH 284
>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Y|B Chain B, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Z|A Chain A, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q8Z|B Chain B, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q97|A Chain A, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q97|B Chain B, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q99|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
pdb|1Q99|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
Length = 373
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEK-GICHGDIKCENVLV 76
+ L+ K ++ QLLL + H + GI H DIK ENVL+
Sbjct: 128 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM 165
>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
In Yeast
pdb|2JD5|A Chain A, Sky1p Bound To Npl3p-Derived Substrate Peptide
pdb|2JD5|B Chain B, Sky1p Bound To Npl3p-Derived Substrate Peptide
Length = 373
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 40 LSLVEKKWLAFQLLLAVKQCHEK-GICHGDIKCENVLV 76
+ L+ K ++ QLLL + H + GI H DIK ENVL+
Sbjct: 128 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM 165
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 51 QLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTG 110
+L A+ CH K + H DIK EN+L+ L ++DF T
Sbjct: 131 ELADALMYCHGKKVIHRDIKPENLLLGLKGELKIADFG---------WSVHAPSLRRKTM 181
Query: 111 GKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFFE-LSHLLAYR 169
L YL PE G M +D++ +G + EL + P FE SH YR
Sbjct: 182 CGTLDYLPPEMI---EGRMH-------NEKVDLWCIGVLCYELLVGNPPFESASHNETYR 231
Query: 170 R 170
R
Sbjct: 232 R 232
>pdb|2JII|A Chain A, Structure Of Vaccinia Related Kinase 3
pdb|2JII|B Chain B, Structure Of Vaccinia Related Kinase 3
Length = 352
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 11 FWQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWL--AFQLLLAVKQCHEKGICHGD 68
F DK +L+ SL+ L P L E+ L A +LL A++ HE HG+
Sbjct: 125 FGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGN 184
Query: 69 IKCENVLV 76
+ EN+ V
Sbjct: 185 VTAENIFV 192
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 27 FNSLRDRLSTPPF-LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLS 85
LR L F L L A+QL A+ K H DI NVLV+S + + L
Sbjct: 474 LGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLG 533
Query: 86 DFA 88
DF
Sbjct: 534 DFG 536
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 47 WLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLSDFA 88
+ A +++L ++ H KGI + D+K +N+L+ + ++DF
Sbjct: 122 FYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFG 163
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 42/216 (19%)
Query: 17 KAAYLLRQYFF--------NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGD 68
K Y +FF L D L+ LS E + + LL + H+ I H D
Sbjct: 77 KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRD 136
Query: 69 IKCENVLVTSWNWLYLSDFASFKPTYIPYXXXXXXXXXXXTGGKRL-------CYLAPER 121
+K EN+L+ + L+DF F P G++L YLAPE
Sbjct: 137 LKPENILLDDDMNIKLTDFG-FSCQLDP--------------GEKLREVCGTPSYLAPEI 181
Query: 122 FYEHGGEMQVAQDAP-LKPSMDIFAVGCVIAELFL-EVPFFELSHLLAYR---RGQYD-P 175
E + + P +D+++ G ++ L PF+ +L R G Y
Sbjct: 182 I-----ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFG 236
Query: 176 SQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211
S + D+ ++ ++ + ++P+ R++AE L +
Sbjct: 237 SPEWDDYSDT-VKDLVSRFLVVQPQKRYTAEEALAH 271
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 108
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 1165
+ + + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 167
Query: 1166 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1223
T+++ D + W N N + ++A I +++L P G
Sbjct: 168 TIISAGNDKM-------------VKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1224 FVSGSSRGVLTLWDL 1238
S G + LW+L
Sbjct: 211 IASAGKDGEIMLWNL 225
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFV-SASDDSTVKVWDSRKLEKDISF 1096
G + +L+ H V +A++ +F+ +AS D TVK+WD R++ SF
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 290
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 436
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFV-SASDDSTVKVWDSRKLEKDISF 1096
G + +L+ H V +A++ +F+ +AS D TVK+WD R++ SF
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 435
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFV-SASDDSTVKVWDSRKLEKDISF 1096
G + +L+ H V +A++ +F+ +AS D TVK+WD R++ SF
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 108
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 1165
+ + + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 167
Query: 1166 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1223
T+++ D + W N N + ++A I +++L P G
Sbjct: 168 TIISAGNDKM-------------VKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1224 FVSGSSRGVLTLWDL 1238
S G + LW+L
Sbjct: 211 IASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating
80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 1048 GILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGS 1107
G+ V + H V + ++ D ++ +SAS D T+++WD E R H S
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET----YQRFVGH--KS 108
Query: 1108 RALCTMMLRHSAQVVVGACDGIIHMFSVDH--ISRGLGNVEKYSGISDIKKKDTKEGAIV 1165
+ + + ++ ++ G+ D I ++++ ++ LG+ + S + + + + + V
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS-V 167
Query: 1166 TLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNTWTLKA--IPEEGYVSSLVTGPCGNW 1223
T+++ D + W N N + ++A I +++L P G
Sbjct: 168 TIISAGNDKM-------------VKAW----NLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1224 FVSGSSRGVLTLWDL 1238
S G + LW+L
Sbjct: 211 IASAGKDGEIMLWNL 225
>pdb|2D2M|C Chain C, Structure Of An Extracellular Giant Hemoglobin Of The
Gutless Beard Worm Oligobrachia Mashikoi
pdb|2D2N|C Chain C, Structure Of An Extracellular Giant Hemoglobin Of The
Gutless Beard Worm Oligobrachia Mashikoi
pdb|2ZFO|C Chain C, Structure Of The Partially Unliganded Met State Of 400 Kda
Hemoglobin: Insights Into Ligand-Induced Structural
Changes Of Giant Hemoglobins
pdb|2ZS0|C Chain C, Structural Basis For The Heterotropic And Homotropic
Interactions Of Invertebrate Giant Hemoglobin
pdb|2ZS1|C Chain C, Structural Basis For The Heterotropic And Homotropic
Interactions Of Invertebrate Giant Hemoglobin
Length = 147
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 225 LHNFYCCWNPLHSDMRVAMCRSVFPEILKQMMGNKSSEDIGSGVGT 270
+HN+ W+ +SD RVA+ ++VF + + + +++ + SGV
Sbjct: 13 MHNWDAAWSAAYSDRRVALAQAVFASLFSR---DAAAQGLFSGVSA 55
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 1189 IHLWDTRSNSNTWTLKAIPEEGY---VSSLVTGPCGNWFVSGSSRGVLTLW 1236
I +W T +S W K++ EG+ V + PCGN+ S S +W
Sbjct: 40 IRIWGTEGDS--WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1068 HDHSFFVSASDDSTVKVWDSRKLE 1091
HD F S+S D T+KVWD+ L+
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTLQ 133
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 27 FNSLRDRLSTPPF-LSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLS 85
LR L F L L A+QL A+ K H DI NVLV+S + + L
Sbjct: 94 LGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLG 153
Query: 86 DFA 88
DF
Sbjct: 154 DFG 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,802,349
Number of Sequences: 62578
Number of extensions: 1616037
Number of successful extensions: 5149
Number of sequences better than 100.0: 528
Number of HSP's better than 100.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 4106
Number of HSP's gapped (non-prelim): 912
length of query: 1472
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1361
effective length of database: 8,027,179
effective search space: 10924990619
effective search space used: 10924990619
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)