Query 000470
Match_columns 1472
No_of_seqs 561 out of 5245
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 17:05:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000470.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_248-252//hhsearch_pdb/000470hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 340.6 13.8 196 1-211 89-285 (311)
2 3hyh_A Carbon catabolite-derep 1.0 1 1 333.9 17.0 196 1-213 70-265 (275)
3 4b9d_A Serine/threonine-protei 1.0 1 1 331.7 15.5 191 1-211 80-277 (350)
4 3ubd_A Ribosomal protein S6 ki 1.0 1 1 331.4 16.1 194 1-211 83-282 (304)
5 3gre_A Serine/threonine-protei 1.0 1 1 331.2 39.9 382 1041-1472 45-437 (437)
6 4fie_A Serine/threonine-protei 1.0 1 1 330.8 19.3 193 1-211 205-401 (423)
7 4fih_A Serine/threonine-protei 1.0 1 1 330.0 18.8 193 1-211 128-324 (346)
8 1vyh_C Platelet-activating fac 1.0 1 1 329.9 41.0 306 1041-1472 91-408 (410)
9 3v5w_A G-protein coupled recep 1.0 1 1 328.1 17.4 195 1-213 249-452 (689)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 328.1 17.6 200 1-213 107-312 (336)
No 1
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=340.59 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=166.2
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCC
Q ss_conf 999883201289994895899930667-9598897099999999999999999999999998898424888997999159
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFF-NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~-gsL~d~l~~~~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~~~ 79 (1472)
|+||||+++++++++++.+|+|||||+ |+|.+++...+.+++.+++.|+.||+.||+|||++||+||||||+|||++.+
T Consensus 89 l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~ 168 (311)
T 4aw0_A 89 LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED 168 (311)
T ss_dssp CCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTT
T ss_pred CCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCC
T ss_conf 79989891999997389899999648998999999874999999999999999999999998878268787899698589
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 90999713664323688999999721220599986423752111237863224579999520478887999999827999
Q 000470 80 NWLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159 (1472)
Q Consensus 80 ~~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~~~ 159 (1472)
+.+||+|||+++....... .....+.+||+.|+|||++. +..|+.++||||+||++|||++|.+|
T Consensus 169 g~vKl~DFGla~~~~~~~~-----~~~~~~~~GTp~YmAPEvl~----------~~~y~~~~DiWSlGvilyeml~G~~P 233 (311)
T 4aw0_A 169 MHIQITDFGTAKVLSPESK-----QARANSFVGTAQYVSPELLT----------EKSACKSSDLWALGCIIYQLVAGLPP 233 (311)
T ss_dssp SCEEECCCTTCEECCTTTT-----CCCBCCCCSCGGGCCHHHHH----------HSCBCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEECCCCEECCCCCC-----CCCCCCCCCCCCCCCHHHHC----------CCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 8889987687502577877-----65436755680307998976----------89999689899899999999749899
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9704799999368999964688998889999998300295889899999997
Q 000470 160 FELSHLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211 (1472)
Q Consensus 160 f~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~sa~e~L~~ 211 (1472)
|...+..............++...++++++||.+||++||++|+|++|++.+
T Consensus 234 F~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~ 285 (311)
T 4aw0_A 234 FRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY 285 (311)
T ss_dssp SCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCH
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCC
T ss_conf 8997999999999719999996569999999999762897578096797587
No 2
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=333.92 Aligned_cols=196 Identities=20% Similarity=0.224 Sum_probs=167.5
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCC
Q ss_conf 99988320128999489589993066795988970999999999999999999999999988984248889979991599
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFFNSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSWN 80 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~gsL~d~l~~~~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~~~~ 80 (1472)
|+||||++++++++++...|+||||++|+|.+++..++.+++.+++.++.||+.||+|||++||+||||||+|||++.++
T Consensus 70 l~HpnIv~~~~~~~~~~~~~ivmEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~ 149 (275)
T 3hyh_A 70 LRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL 149 (275)
T ss_dssp CCCTTBCCEEEEEECSSEEEEEEECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTC
T ss_pred CCCCCCCEEEEEEEECCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC
T ss_conf 79989992999999899899999278997899998749999999999999999999999988930666875876887999
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 09997136643236889999997212205999864237521112378632245799995204788879999998279999
Q 000470 81 WLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPFF 160 (1472)
Q Consensus 81 ~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~~~f 160 (1472)
.+||+|||+++..... ....+.+||+.|+|||++.+. ..++.++||||+||++|||++|++||
T Consensus 150 ~vkl~DFGla~~~~~~--------~~~~~~~GT~~Y~APE~~~~~---------~y~~~~~DiwSlGvily~lltg~~PF 212 (275)
T 3hyh_A 150 NVKIADFGLSNIMTDG--------NFLKTSCGSPNYAAPEVISGK---------LYAGPEVDVWSCGVILYVMLCRRLPF 212 (275)
T ss_dssp CEEECCSSCC-----------------------CTTSCHHHHSSS---------SCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEEECCCCEECCCC--------CCCCCEEECCCCCCHHHHCCC---------CCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8999454777266788--------746770289352774550689---------88898365687899999999887998
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 70479999936899996468899888999999830029588989999999721
Q 000470 161 ELSHLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQNYA 213 (1472)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~sa~e~L~~~~ 213 (1472)
.........+........++...++++++||.+||++||++|+|++|+++|.+
T Consensus 213 ~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw 265 (275)
T 3hyh_A 213 DDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDW 265 (275)
T ss_dssp CCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCC
T ss_conf 99899999999974999998779999999999986589668919999971920
No 3
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=331.71 Aligned_cols=191 Identities=23% Similarity=0.291 Sum_probs=162.8
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCC-CCHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEC
Q ss_conf 999883201289994895899930667-9598897099--9999999999999999999999988984248889979991
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFF-NSLRDRLSTP--PFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVT 77 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~-gsL~d~l~~~--~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~ 77 (1472)
|+||||++++++++++...|+|||||+ |+|.++|..+ ..+++.+++.|+.||+.||+|||++||+||||||+|||++
T Consensus 80 l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~ 159 (350)
T 4b9d_A 80 MKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLT 159 (350)
T ss_dssp CCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEEC
T ss_pred CCCCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEEC
T ss_conf 79989891999999899999999488998399999973899997899999999999999999989915135978997987
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 59909997136643236889999997212205999864237521112378632245799995204788879999998279
Q 000470 78 SWNWLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEV 157 (1472)
Q Consensus 78 ~~~~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~ 157 (1472)
.+|.+||+|||+++..... .....+.+||+.|+|||++. +..|+.++||||+||++|||++|+
T Consensus 160 ~~g~vKl~DFGla~~~~~~-------~~~~~~~~GT~~YmAPE~l~----------~~~y~~~~DiwSlGvilyemltG~ 222 (350)
T 4b9d_A 160 KDGTVQLGDFGIARVLNST-------VELARACIGTPYYLSPEICE----------NKPYNNKSDIWALGCVLYELCTLK 222 (350)
T ss_dssp TTCCEEECSTTEESCCCHH-------HHHHHHHHSCCTTCCHHHHT----------TCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEECCCCCCEEECCC-------CCCCCCCCCCCCCCCHHHHC----------CCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8999897646521440688-------54101457883603999987----------999895999999999999999787
Q ss_pred CCCCCHHHHH----HHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9997047999----99368999964688998889999998300295889899999997
Q 000470 158 PFFELSHLLA----YRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211 (1472)
Q Consensus 158 ~~f~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~sa~e~L~~ 211 (1472)
+||....... +..+.+. .++...++++++||.+||++||++|||++|+|+|
T Consensus 223 ~PF~~~~~~~~~~~i~~~~~~---~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 223 HAFEAGSMKNLVLKIISGSFP---PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp CSCCCSSHHHHHHHHHHTCCC---CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 998996999999999808999---9975579999999999855896679089999639
No 4
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=331.37 Aligned_cols=194 Identities=19% Similarity=0.208 Sum_probs=165.8
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCC
Q ss_conf 999883201289994895899930667-9598897099999999999999999999999998898424888997999159
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFF-NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~-gsL~d~l~~~~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~~~ 79 (1472)
|+||||++++++++++...|+|||||+ |+|.+++...+.+++.+++.++.||+.||+|||++||+||||||+|||++.+
T Consensus 83 l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~ 162 (304)
T 3ubd_A 83 VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEE 162 (304)
T ss_dssp CCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTT
T ss_pred CCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCC
T ss_conf 79979990999999899999999757998889999755999999999999999999999997799588887899578689
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 90999713664323688999999721220599986423752111237863224579999520478887999999827999
Q 000470 80 NWLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159 (1472)
Q Consensus 80 ~~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~~~ 159 (1472)
|.+||+|||+++....... ...+.+||+.|+|||++. ...|+.++||||+||++|||++|++|
T Consensus 163 g~vKl~DFGla~~~~~~~~-------~~~~~~GT~~YmAPE~~~----------~~~y~~~~DiwSlGvilyemltG~~P 225 (304)
T 3ubd_A 163 GHIKLTDFGLSKESIDHEK-------KAYSFCGTVEYMAPEVVN----------RRGHTQSADWWSFGVLMFEMLTGTLP 225 (304)
T ss_dssp SCEEEESSEEEEC-----C-------CCCSCCCCGGGCCHHHHH----------TSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEECCCCCCEECCCCCC-------CCCCCCCCCCCCCHHHHC----------CCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 9887623663433268876-------304544181507999965----------68878777636119999999859899
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC-----HHHHHHH
Q ss_conf 970479999936899996468899888999999830029588989-----9999997
Q 000470 160 FELSHLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFS-----AESYLQN 211 (1472)
Q Consensus 160 f~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~s-----a~e~L~~ 211 (1472)
|......+...........++...++++++||.+||++||++|+| ++|+++|
T Consensus 226 F~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H 282 (304)
T 3ubd_A 226 FQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH 282 (304)
T ss_dssp SCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHCC
T ss_conf 898499999999971899998768999999999986469878799986789999769
No 5
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=331.23 Aligned_cols=382 Identities=19% Similarity=0.318 Sum_probs=279.8
Q ss_pred CCCCCCCCCEEEEC-CCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCC
Q ss_conf 98855565363451-12345555899907-99799999299979999399886442111105874169732799992499
Q 000470 1041 DSGWRPRGILVAHL-QEHCSAVNEIAISH-DHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHS 1118 (1472)
Q Consensus 1041 ~~~W~p~G~lV~~L-~~H~~~V~~iafsp-d~~~lvSgS~DGtVkIWD~~~~e~~~~~~s~~t~~~~~~~I~~i~f~~~~ 1118 (1472)
...|+++|.+++++ .+|.++|++++|+| ++.+|+||+.||+|++||+.+.+.....+....+. |...|++++|++++
T Consensus 45 ~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 45 PNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNF 123 (437)
T ss_dssp CCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTS
T ss_pred CCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEECC-CCCCEEEEEEECCC
T ss_conf 65435644487552367998527999878999889996699639996876544575213134306-89977899995899
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCC---CCCEEEEEE--ECCCCCCCEEEEEEECCCEEEEEE
Q ss_conf 799999179949999801124688864334685452330279---985899997--137998721999995897499995
Q 000470 1119 AQVVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTK---EGAIVTLVN--YNTDNCASHMFMYSTQNCGIHLWD 1193 (1472)
Q Consensus 1119 ~~las~s~DG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~~~d~~s~~~Lv~at~dg~I~iwD 1193 (1472)
+.+++++.||.|++|+++.... +...+......++..... ++..+.++. ++++ +..+++++.||.|++||
T Consensus 124 ~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 124 DAFAVSSKDGQIIVLKVNHYQQ--ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE---KSLLVALTNLSRVIIFD 198 (437)
T ss_dssp SEEEEEETTSEEEEEEEEEEEE--TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS---CEEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCEEEEEEECCCCC--CCEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCC---CCEEEEEECCCEEEEEE
T ss_conf 8899990899799999234557--721431353406789746766566716889997599---98899995898499996
Q ss_pred CCCCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99898654000478766538999969998999993799399997899951006741566772047842599997444689
Q 000470 1194 TRSNSNTWTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAVSTTA 1273 (1472)
Q Consensus 1194 lrt~~~~~~l~~~~h~g~Itsi~~sp~g~~LvsGssdG~I~lWDlR~~~~i~s~~~~~~~~I~~l~~~~p~~~~~~~s~~ 1273 (1472)
+++++...++..+.|.+.|++++|+|++.+|++|+.||.|++||++.+.++..+...+..+|.++.+ +|.. +.+
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~-----s~~ 272 (437)
T 3gre_A 199 IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV-CQFY-----GKN 272 (437)
T ss_dssp TTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE-CTTT-----CTT
T ss_pred CCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEE-CCCC-----CCC
T ss_conf 7788264797458878954899988998899998689849999767763788885189986678886-1355-----888
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 997999986994999986887177898613588987668776323588988999753323445332223448999--886
Q 000470 1274 RPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPP--PRL 1351 (1472)
Q Consensus 1274 ~~~i~vas~dg~V~VWDl~tg~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~ 1351 (1472)
+.++++++.|+.|.+||+.++++...+..+... .....+.+ ... .+... ... .|.
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~---~~~---------------~l~~~-~~~~~~~~ 329 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ----PSMEHFLP---IEK---------------GLEEL-NFCGIRSL 329 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSC----CCGGGGSC---BCS---------------SGGGC-CCCCCCSG
T ss_pred CCEEEEECCCCCEEEEECCCCCEEEEEECCCCC----CCCCEECC---CCC---------------CCCCC-EECCCCCC
T ss_conf 549999748981899984788088999858889----75110041---204---------------43100-00244467
Q ss_pred CCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 78158344899918981699909997399999964971899889999840678605861999954058864012467887
Q 000470 1352 LGIRSLLPLPGGDLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAKAVL 1431 (1472)
Q Consensus 1352 ~~V~sl~~~p~g~LiTgg~Dg~IriWDl~~~~~s~vi~g~~~~~~~~~~~y~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 1431 (1472)
..|++++|+++..+++|+.|+.|++||+.+++....+.+.... ...+..........+..+.....
T Consensus 330 ~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------- 395 (437)
T 3gre_A 330 NALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRF---SDVFIPTQVTANLTMLLRKMKRT----------- 395 (437)
T ss_dssp GGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--C---CCEEEEEEEETTEEEEEEECC-------------
T ss_pred CCEEEEEECCCEEEEECCCCCEEEEEECCCCCCCEEEECCCCC---CCEEEEEEEECCEEEEEEECCCC-----------
T ss_conf 8337999879669996389974999979995105698446656---76078877605458999745535-----------
Q ss_pred HHHHCCCCCCCCCCEEEEEEEECC--CCEEEEECCCCEEEECC
Q ss_conf 542017778875304587522069--82899980894389839
Q 000470 1432 AAAATDSAGCHRDSILSLGSVKLN--QRLLISSSRDGAIKVWK 1472 (1472)
Q Consensus 1432 ~~~~~~~~~~H~d~I~~ia~~~~~--~~~LvS~s~DG~IkVWk 1472 (1472)
..........|.+.|++++ +.++ +.+|+||++||.|+||+
T Consensus 396 ~~~~~~~~~~h~~~I~~i~-~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 396 STHSVDDSLYHHDIINSIS-TCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----------CCCEEEEE-EEESSSSEEEEEEETTSCEEEEC
T ss_pred CCCCCCCCCCCCCCEEEEE-EECCCCCEEEEEECCCCEEEEEC
T ss_conf 4465676556653046672-30158825999984786688729
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=330.75 Aligned_cols=193 Identities=18% Similarity=0.226 Sum_probs=162.5
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCC
Q ss_conf 999883201289994895899930667-9598897099999999999999999999999998898424888997999159
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFF-NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~-gsL~d~l~~~~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~~~ 79 (1472)
|+||||+++++++++++.+|||||||. |+|.+++... .+++.+++.|+.||+.||+|||++||+||||||+|||++.+
T Consensus 205 l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~~-~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~ 283 (423)
T 4fie_A 205 YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT-RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHD 283 (423)
T ss_dssp CCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTT
T ss_pred CCCCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCC
T ss_conf 79989871689999899999999698998289887616-98999999999999999999998890446578777898589
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 90999713664323688999999721220599986423752111237863224579999520478887999999827999
Q 000470 80 NWLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159 (1472)
Q Consensus 80 ~~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~~~ 159 (1472)
|.+||+|||+++....... ...+.+|++.|+|||++. ...|+.++|||||||++|||++|++|
T Consensus 284 g~vKl~DFGla~~~~~~~~-------~~~~~~GTp~YmAPEvl~----------~~~y~~~~DiWSlGvilyeml~G~~P 346 (423)
T 4fie_A 284 GRVKLSDFGFCAQVSKEVP-------RRKSLVGTPYWMAPELIS----------RLPYGPEVDIWSLGIMVIEMVDGEPP 346 (423)
T ss_dssp CCEEECCCTTCEECCSSCC-------CBCCCEECTTTCCHHHHT----------TCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEECCCCCEECCCCCC-------CCCCCCCCCCCCCHHHHC----------CCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9989803726547778876-------434666474727999977----------99999689999999999999978799
Q ss_pred CCCHHHHHH---HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 970479999---9368999964688998889999998300295889899999997
Q 000470 160 FELSHLLAY---RRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211 (1472)
Q Consensus 160 f~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~sa~e~L~~ 211 (1472)
|........ ......+....+...++++++||.+||++||++|+|++|+|+|
T Consensus 347 F~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 347 YFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp TTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 8986999999999727998876501299999999999867895689099999609
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=329.98 Aligned_cols=193 Identities=18% Similarity=0.226 Sum_probs=162.7
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCC
Q ss_conf 999883201289994895899930667-9598897099999999999999999999999998898424888997999159
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFF-NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~-gsL~d~l~~~~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~~~ 79 (1472)
|+||||++++++++++..+|||||||+ |+|.+++... .+++.+++.|+.||+.||+|||++||+||||||+|||++.+
T Consensus 128 l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~ 206 (346)
T 4fih_A 128 YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT-RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHD 206 (346)
T ss_dssp CCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTT
T ss_pred CCCCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCC
T ss_conf 79989991999999899999999698998089998718-98999999999999999999998883556278899788799
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 90999713664323688999999721220599986423752111237863224579999520478887999999827999
Q 000470 80 NWLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159 (1472)
Q Consensus 80 ~~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~~~ 159 (1472)
|.+||+|||+++....... ...+.+||+.|+|||++. ...|+.++||||+||++|||++|.+|
T Consensus 207 g~vKl~DFGla~~~~~~~~-------~~~~~~GTp~YmAPEvl~----------~~~y~~~~DiWSlGvilyeml~G~~P 269 (346)
T 4fih_A 207 GRVKLSDFGFCAQVSKEVP-------RRKSLVGTPYWMAPELIS----------RLPYGPEVDIWSLGIMVIEMVDGEPP 269 (346)
T ss_dssp CCEEECCCTTCEECCSSSC-------CBCCCCSCGGGCCHHHHT----------TCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEECCCCCEECCCCCC-------CCCCCCCCCCCCCHHHHC----------CCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9889902757536678877-------534656275827999977----------99999689999999999999978799
Q ss_pred CCCHHHHHH---HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 970479999---9368999964688998889999998300295889899999997
Q 000470 160 FELSHLLAY---RRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQN 211 (1472)
Q Consensus 160 f~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~sa~e~L~~ 211 (1472)
|........ ......+....+...++++++||.+||++||++|+|++|+|+|
T Consensus 270 F~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 270 YFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp TTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 8985999999999717999887502299999999999867995689099999609
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=329.92 Aligned_cols=306 Identities=19% Similarity=0.275 Sum_probs=258.5
Q ss_pred CCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCE
Q ss_conf 98855565363451123455558999079979999929997999939988644211110587416973279999249979
Q 000470 1041 DSGWRPRGILVAHLQEHCSAVNEIAISHDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRALCTMMLRHSAQ 1120 (1472)
Q Consensus 1041 ~~~W~p~G~lV~~L~~H~~~V~~iafspd~~~lvSgS~DGtVkIWD~~~~e~~~~~~s~~t~~~~~~~I~~i~f~~~~~~ 1120 (1472)
+..|.|.......+.+|.++|++++|+|++.+++|||.||+|++||..+++ ...++.+|...|.+++|+++++.
T Consensus 91 ~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~------~~~~l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 91 PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD------FERTLKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp -CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC------CCEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC------EEEEEECCCCCEEEEEECCCCCE
T ss_conf 011234897307661667768999996999989999389859999899993------77888166786878998599999
Q ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 99991799499998011246888643346854523302799858999971379987219999958974999959989865
Q 000470 1121 VVVGACDGIIHMFSVDHISRGLGNVEKYSGISDIKKKDTKEGAIVTLVNYNTDNCASHMFMYSTQNCGIHLWDTRSNSNT 1200 (1472)
Q Consensus 1121 las~s~DG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~d~~s~~~Lv~at~dg~I~iwDlrt~~~~ 1200 (1472)
+++|+.||+|++||+... ..++ ....|...+.++.|+|+ +..+++++.|+.|++||++++.+.
T Consensus 165 l~sgs~D~~i~iwd~~~~-------------~~~~-~~~~h~~~V~~v~~~p~---~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGF-------------ECIR-TMHGHDHNVSSVSIMPN---GDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp EEEEETTSCCCEEETTSS-------------CEEE-CCCCCSSCEEEEEECSS---SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEECCCEEEEEECCCC-------------CEEE-EECCCCCCEEEEEEECC---CCEEEEEECCCEEEEEECCCCCEE
T ss_conf 999918981999958998-------------2669-98289997789999679---999999968996999989999489
Q ss_pred CEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCEEEEEECCCCCCCC-----------
Q ss_conf 400047876653899996999899999379939999789995100674156677204784259999744-----------
Q 000470 1201 WTLKAIPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWQYSQVCPIEKMCLFVPPPNAAV----------- 1269 (1472)
Q Consensus 1201 ~~l~~~~h~g~Itsi~~sp~g~~LvsGssdG~I~lWDlR~~~~i~s~~~~~~~~I~~l~~~~p~~~~~~----------- 1269 (1472)
.++.. |.+.+++++++|++.++++|+.||.|++||++.+.+...+.. +...|.++.+ +|......
T Consensus 228 ~~~~~--h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~-~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 228 KTFTG--HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISW-APESSYSSISEATGSETKK 303 (410)
T ss_dssp EEEEC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEE-CCSCGGGGGGGCCSCC---
T ss_pred EEEEC--CCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-CCCEEEEEEE-CCCCCCCCHHHHCCCCCCC
T ss_conf 99927--886289999989999999991899099998989743667337-8745899998-5865543101212555556
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46899979999869949999868871778986135889876687763235889889997533234453322234489998
Q 000470 1270 STTARPLIYVAAGCNEVSLWNAENGSCHQVLRTANYDGDTEMSDLPWAFARPSSRSNPKTDLRRNVNQKYRVDELNEPPP 1349 (1472)
Q Consensus 1270 ~s~~~~~i~vas~dg~V~VWDl~tg~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1349 (1472)
....++++++++.|+.|.+||+.++.+...+..
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~----------------------------------------------- 336 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG----------------------------------------------- 336 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTEEEEEEEC-----------------------------------------------
T ss_pred CCCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-----------------------------------------------
T ss_conf 678888999993898499998899966999977-----------------------------------------------
Q ss_pred CCCCCEEECCCCCC-CEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCHHHHHH
Q ss_conf 86781583448999-18981699909997399999964971899889999840678605861999954058864012467
Q 000470 1350 RLLGIRSLLPLPGG-DLLTGGTDLKIRRWDHCSPGRSYCICGPNLKGVGNDEFYETRSSSGVQVVQERKRQPLTSKLTAK 1428 (1472)
Q Consensus 1350 ~~~~V~sl~~~p~g-~LiTgg~Dg~IriWDl~~~~~s~vi~g~~~~~~~~~~~y~~~~~~~~~~~~e~~~~~~~~~~~~~ 1428 (1472)
|...|++++|+|+| ++++|+.|+.|++||+.+++....+.+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-------------------------------------- 378 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-------------------------------------- 378 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC--------------------------------------
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC--------------------------------------
T ss_conf 888589999949989999995979299998999906899847--------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf 88754201777887530458752206982899980894389839
Q 000470 1429 AVLAAAATDSAGCHRDSILSLGSVKLNQRLLISSSRDGAIKVWK 1472 (1472)
Q Consensus 1429 ~~~~~~~~~~~~~H~d~I~~ia~~~~~~~~LvS~s~DG~IkVWk 1472 (1472)
|.+.|++++ |++++.+|+||+.||.|+||+
T Consensus 379 -------------h~~~v~~l~-~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 379 -------------HEHFVTSLD-FHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp -------------CSSCEEEEE-ECSSSSCEEEEETTSEEEEEC
T ss_pred -------------CCCCEEEEE-ECCCCCEEEEEECCCCEEEEE
T ss_conf -------------778689999-828999999992799489973
No 9
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=328.14 Aligned_cols=195 Identities=16% Similarity=0.189 Sum_probs=166.0
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCC
Q ss_conf 999883201289994895899930667-9598897099999999999999999999999998898424888997999159
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFF-NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~-gsL~d~l~~~~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~~~ 79 (1472)
++||||++++++|+++..+|+||||+. |+|.++|...+.+++.++++|+.||+.||+|||++||+||||||+|||++..
T Consensus 249 ~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~ 328 (689)
T 3v5w_A 249 GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEH 328 (689)
T ss_dssp SCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTT
T ss_pred CCCCCEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECC
T ss_conf 89998717999999899889999468998299999866999999999999999999999997885416886687598089
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 90999713664323688999999721220599986423752111237863224579999520478887999999827999
Q 000470 80 NWLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVPF 159 (1472)
Q Consensus 80 ~~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~~~ 159 (1472)
|.+||+|||+++...... ..+.+||+.|+|||++. .+..|+.++||||+||++|||++|.+|
T Consensus 329 G~vKL~DFGlA~~~~~~~---------~~t~~GTp~YmAPEvl~---------~~~~y~~~vDiWSLGvilYEmLtG~~P 390 (689)
T 3v5w_A 329 GHVRISDLGLACDFSKKK---------PHASVGTHGYMAPEVLQ---------KGVAYDSSADWFSLGCMLFKLLRGHSP 390 (689)
T ss_dssp SCEEECCCTTCEECSSCC---------CCSCCSCGGGCCHHHHS---------TTCCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEECCCCEEEECCCCC---------CCCCCCCCCCCCHHHHH---------CCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 988964565566637898---------77765786731889984---------799999599999999999999868799
Q ss_pred CCCH---HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC-----HHHHHHHHH
Q ss_conf 9704---79999936899996468899888999999830029588989-----999999721
Q 000470 160 FELS---HLLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFS-----AESYLQNYA 213 (1472)
Q Consensus 160 f~~~---~~~~~~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~s-----a~e~L~~~~ 213 (1472)
|... ....+.+........++...++++++||.+||++||++|++ ++|+++|.+
T Consensus 391 F~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~Hpf 452 (689)
T 3v5w_A 391 FRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPF 452 (689)
T ss_dssp TCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGG
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCC
T ss_conf 99998677999998505798888766999999999997608986879998889999966915
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=328.12 Aligned_cols=200 Identities=19% Similarity=0.106 Sum_probs=166.5
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCC
Q ss_conf 999883201289994895899930667-9598897099999999999999999999999998898424888997999159
Q 000470 1 MSSTPCVHKKFWQETDKAAYLLRQYFF-NSLRDRLSTPPFLSLVEKKWLAFQLLLAVKQCHEKGICHGDIKCENVLVTSW 79 (1472)
Q Consensus 1 l~hpNIv~~~~~~~~~~~~ylV~e~~~-gsL~d~l~~~~~l~~~~~~~i~~Qil~aL~~lH~~gIvH~DIKpeNILv~~~ 79 (1472)
|+||||++++++++++...|+|||||+ |+|.++|..++.+++.+++.|+.||+.||+|||++||+||||||+|||++.+
T Consensus 107 l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~ 186 (336)
T 4g3f_A 107 LSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSD 186 (336)
T ss_dssp CCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTT
T ss_pred CCCCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEECC
T ss_conf 79989993999999899999999665998699999876999999999999999999999998890426167788799589
Q ss_pred C-CEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9-099971366432368899999972122059998642375211123786322457999952047888799999982799
Q 000470 80 N-WLYLSDFASFKPTYIPYDDPSDFSFFFDTGGKRLCYLAPERFYEHGGEMQVAQDAPLKPSMDIFAVGCVIAELFLEVP 158 (1472)
Q Consensus 80 ~-~vkL~DFg~~k~~~~~~~~~~~~~~~~~t~~~~~~y~APE~~~~~~~~~~~~~~~~~t~~~DIwSlG~vl~el~tg~~ 158 (1472)
| .+||+|||+++........ .......+.+||+.|+|||++. +..|+.++||||+||++|||++|++
T Consensus 187 g~~vKl~DFGla~~~~~~~~~--~~~~~~~~~~GT~~YmAPE~~~----------~~~y~~~~DiwSlGvilyemltG~~ 254 (336)
T 4g3f_A 187 GSRAALCDFGHALCLQPDGLG--KSLLTGDYIPGTETHMAPEVVM----------GKPCDAKVDIWSSCCMMLHMLNGCH 254 (336)
T ss_dssp SCCEEECCCTTCEEC--------------CCCCCCGGGCCHHHHT----------TCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEEECCCCEECCCCCCC--CCEECCCCCCCCCCCCCHHHHC----------CCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 997999627877685678765--4022178545580200899988----------9998908999999999999997869
Q ss_pred CCCCHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 997047----9999936899996468899888999999830029588989999999721
Q 000470 159 FFELSH----LLAYRRGQYDPSQHLEKIPDSGIRKMILHMIQLEPELRFSAESYLQNYA 213 (1472)
Q Consensus 159 ~f~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~lI~~mL~~dP~~R~sa~e~L~~~~ 213 (1472)
||.... ...+..... +...++...++.+++||.+||++||++|||+.|+++++.
T Consensus 255 Pf~~~~~~~~~~~i~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~ 312 (336)
T 4g3f_A 255 PWTQYFRGPLCLKIASEPP-PIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVG 312 (336)
T ss_dssp SSTTTCCSCCHHHHHHSCC-GGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCC-CCHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
T ss_conf 9899899999999980899-800258667999999999976289768959999999999
Done!