BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000471
(1472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 41/234 (17%)
Query: 296 LLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDD 353
LL+LDDVW+ ++ + +C +I++TTR+ V + MG V ++ L +
Sbjct: 239 LLILDDVWDSWVLKAFDSQC---------QILLTTRDKSVTDSVMGPKYVVPVESSLGKE 289
Query: 354 DCLCVLTQ-ISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFV 412
L +L+ +++ D L E I+ +C G PL +G LL RD P WE+
Sbjct: 290 KGLEILSLFVNMKKAD------LPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 341
Query: 413 LK----TDIWNLRDSD------ILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEII 462
LK +R S + A+ +S L +K + S+ KD + + +
Sbjct: 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 401
Query: 463 LLWTAEGLLDQEYNGRKMEDLGREFVRELHSRSLFQQSSKDASRFVMHDLINDL 516
+LW E ++ED+ +EFV + LF + + R+ +HDL D
Sbjct: 402 ILWDME--------TEEVEDILQEFV---NKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 41/234 (17%)
Query: 296 LLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDD 353
LL+LDDVW+ ++ + +C +I++TTR+ V + MG V ++ L +
Sbjct: 245 LLILDDVWDSWVLKAFDSQC---------QILLTTRDKSVTDSVMGPKYVVPVESSLGKE 295
Query: 354 DCLCVLTQ-ISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFV 412
L +L+ +++ D L E I+ +C G PL +G LL RD P WE+
Sbjct: 296 KGLEILSLFVNMKKAD------LPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 347
Query: 413 LK----TDIWNLRDSD------ILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEII 462
LK +R S + A+ +S L +K + S+ KD + + +
Sbjct: 348 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 407
Query: 463 LLWTAEGLLDQEYNGRKMEDLGREFVRELHSRSLFQQSSKDASRFVMHDLINDL 516
+LW E ++ED+ +EFV + LF + + R+ +HDL D
Sbjct: 408 ILWDME--------TEEVEDILQEFVNK---SLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 26/152 (17%)
Query: 1196 LEHLQVRFCSNLAFLSRNGNLPQALKYLRV----EDCSKLESLAERLDNTSLEEITISV- 1250
L L +R C L LP+ L + L+SL RL+ T + + S+
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSL--RLEWTGIRSLPASIA 203
Query: 1251 -LENLKSL-----------PADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYD 1298
L+NLKSL PA +H+L L+++ + C L ++P L L + D
Sbjct: 204 NLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
Query: 1299 CENLKALPNCMHNLTSLLILEIRGCPSVVSFP 1330
C NL LP +H LT L L++RGC ++ P
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Query: 1241 TSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTK-------LTE 1293
LE +T++ L++LPA + +L+ L+++ I CP L PE L ST L
Sbjct: 127 AGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVN 184
Query: 1294 LTIYDCE--NLKALPNCMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKP 1351
L E +++LP + NL +L L+IR P P L+ L++RG
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG------ 238
Query: 1352 LPEWGFNRFTSLRRF-TICGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLE 1410
T+LR + I GG A L L + D +L ++ LT LE
Sbjct: 239 --------CTALRNYPPIFGGR----------APLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 1411 TLRLFNCPKLKYFP 1424
L L C L P
Sbjct: 281 KLDLRGCVNLSRLP 294
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 599 RLRVFSLRGCGNIFNLPNEIGN---------LKHLRCLNLSRTRIQILPESINSLYNLHT 649
RLR S+R C + LP + + L +L+ L L T I+ LP SI +L NL +
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 650 ILLEDCHQLKKLCKDMGNLRKLHHLRNSTANSLKEMPKGFG 690
+ + + L L + +L KL L +L+ P FG
Sbjct: 211 LKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 1008 LQFLKLSKCEGLTRLPQALLTLSSLTEMRISGCASLVSFPQAALPS----------HLRT 1057
L+ L L++ L LP ++ +L+ L E+ I C L P+ + +L++
Sbjct: 129 LETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 1058 VKIEDCNALESLPEAWMHNSNSSLESLKIRNCNSLVSFPEVALPSQLRTVKIEYCNALIS 1117
+++E + SLP + + N L+SLKIRN P + +L + + C AL +
Sbjct: 188 LRLE-WTGIRSLPASIANLQN--LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 1118 LPEAWMQNSNTSLESLRIKGCDSLKYIARIQLPPSLKRLIVSRCWNLRTLIGEQDICSSS 1177
P + L+ L +K C +L + LP + RL T + + D+
Sbjct: 245 YPPIF--GGRAPLKRLILKDCSNL-----LTLPLDIHRL---------TQLEKLDL---- 284
Query: 1178 RGCTSLTYFSS 1188
RGC +L+ S
Sbjct: 285 RGCVNLSRLPS 295
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 588 SVLQRLLNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSR-TRIQILPESINSLYN 646
S L ++HLP+L LRGC + N P G L+ L L + + LP I+ L
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 647 LHTILLEDCHQLKKL 661
L + L C L +L
Sbjct: 279 LEKLDLRGCVNLSRL 293
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 1176 SSRGCTSLTYF---------SSENELPTMLEHLQVRFCSNLAFLSRNGNLPQALKYLRVE 1226
S R C LT S E++ L+ L++ + + + NL Q LK L++
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-QNLKSLKIR 214
Query: 1227 DCSKLESLAERLDN-TSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEG 1285
+ S L +L + + LEE+ + L++ P L+++ + C NL + P +
Sbjct: 215 N-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 1286 LPSTKLTELTIYDCENLKALPNCMHNLTS 1314
T+L +L + C NL LP+ + L +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 611 IFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRK 670
I +LP I NL++L+ L + + + L +I+ L L + L C L+ G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 671 LHHLRNSTANSLKEMPKGFGKLTSL 695
L L ++L +P +LT L
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQL 279
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 296 LLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDD 353
LL+LDDVW+ ++ + +C +I++TTR+ V + MG V ++ L +
Sbjct: 239 LLILDDVWDPWVLKAFDNQC---------QILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 354 DCLCVLTQ-ISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFV 412
L +L+ +++ D L I+ +C G PL +G LL RD P W +
Sbjct: 290 KGLEILSLFVNMKKED------LPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYY 341
Query: 413 LK----TDIWNLRDSD------ILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEII 462
L+ +R S + A+ +S L +K + S+ KD + + +
Sbjct: 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 401
Query: 463 LLWTAEGLLDQEYNGRKMEDLGREFVRELHSRSLFQQSSKDASRFVMHDLINDL 516
+LW E ++ED+ +EFV + LF + + + +HDL D
Sbjct: 402 VLWDLE--------TEEVEDILQEFVNK---SLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 41/234 (17%)
Query: 296 LLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDD 353
LL+LDDVW+ ++ + +C +I++TT + V + MG V ++ L +
Sbjct: 246 LLILDDVWDPWVLKAFDNQC---------QILLTTSDKSVTDSVMGPKHVVPVESGLGRE 296
Query: 354 DCLCVLTQ-ISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFV 412
L +L+ +++ D L I+ +C G PL +G LL RD P W +
Sbjct: 297 KGLEILSLFVNMKKED------LPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYY 348
Query: 413 LK----TDIWNLRDSD------ILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEII 462
L+ +R S + A+ +S L +K + S+ KD + + +
Sbjct: 349 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 408
Query: 463 LLWTAEGLLDQEYNGRKMEDLGREFVRELHSRSLFQQSSKDASRFVMHDLINDL 516
+LW E ++ED+ +EFV + LF + + + +HDL D
Sbjct: 409 VLWDLE--------TEEVEDILQEFVNK---SLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 665 MGNLRKLHHLRNSTANSLKEM-PKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGT 723
NL KLH +R AN+L + P+ F L +L L S +G++ L + +
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL------LISNTGIKHLPDVHKIHSL 128
Query: 724 LRISKLENVKDVGDASEAQLNNKVNL--EALLLKWSARDVQNLDQCEFETHVLSVLK--P 779
++ L +++D + + N+ V L E+++L + +Q + C F L L
Sbjct: 129 QKV--LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 186
Query: 780 HRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTSTSLPSVGQLPFLKELR 834
+ +++EL + G P+ L++ R SLPS G L LK+LR
Sbjct: 187 NNNLEELPNDVFHGASGPVI-----------LDISRTRIHSLPSYG-LENLKKLR 229
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 35/169 (20%)
Query: 1215 NLPQALKYLRVEDCSKLESL-AERLDNT-SLEEITISVLENLKSLPADLHNLHHLQKIWI 1272
NLP+ L +R+E + L + E N +L+ + IS +K LP D+H +H LQK+ +
Sbjct: 77 NLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLP-DVHKIHSLQKVLL 133
Query: 1273 NYCPNLESFPEE---------------------------GLPSTKLTELTIYDCENLKAL 1305
+ N+ E T+L EL + D NL+ L
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 193
Query: 1306 PN-CMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLP 1353
PN H + +IL+I + S P G NL+ L R K LP
Sbjct: 194 PNDVFHGASGPVILDISRT-RIHSLPSYGL-ENLKKLRARSTYNLKKLP 240
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From
Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich Effector
Protein From Yersinia Pestis
Length = 454
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 148/389 (38%), Gaps = 61/389 (15%)
Query: 870 EWEEWIPCGAGEEVDEVFPKLRKLSLFHCHKLQ-----GTXXXXXXXXXXXVIKSCQQLI 924
EWE P G GE+ + +LR H+L+ + ++ SC L
Sbjct: 45 EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT 104
Query: 925 VTIQCLPALSELQIDGCKRVVFSS-PHLVHAVNVRKQAYFWRSETRLPQ----------D 973
+ +L L +D S P L+ + V +LP+ D
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL-----EKLPELQNSSFLKIID 159
Query: 974 IRSLNRLQISRCPQLLSLVTEEEHDQQQPESPCRLQFLK--LSKCEGLTRLPQALLTLSS 1031
+ + + ++ P L + + ++ L FL + L +LP L+L S
Sbjct: 160 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLES 219
Query: 1032 LTEMRISGCASLVSFPQAALPSHLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRNCNS 1091
+ ++G L P+ L T+ D N L++LP+ SLE+L +R+ N
Sbjct: 220 I----VAGNNILEELPELQNLPFLTTI-YADNNLLKTLPDLP-----PSLEALNVRD-NY 268
Query: 1092 LVSFPEVALPSQLRTVKIEYCNALISL-PEAWMQNSNT-----------SLESLRIKGCD 1139
L PE+ V + L L P + N+++ SLE L +
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN- 327
Query: 1140 SLKYIARIQLPPSLKRLIVSRCWNLRTLIGE--QDICSSSRGCTSLTYFSSENELPTMLE 1197
K I LPP L+RLI S +N + E Q++ L F ++P +E
Sbjct: 328 --KLIELPALPPRLERLIAS--FNHLAEVPELPQNLKQLHVEYNPLREFP---DIPESVE 380
Query: 1198 HLQVRFCSNLAFLSRNGNLPQALKYLRVE 1226
L R S+LA + LPQ LK L VE
Sbjct: 381 DL--RMNSHLAEVPE---LPQNLKQLHVE 404
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.5 bits (75), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 1196 LEHLQVRFCSNLAFLSRNG--NLPQALKYLRVEDCSKLESLAERLDNTSLEEITISVLEN 1253
L +++ +NL +++ NLP L+YL + + + ++ L + SL+++ + + +N
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPN-LQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDN 138
Query: 1254 LKSLPADLHNLHHLQK------------IWINYCPNLESFPEEGLPSTKLTELTIYDCEN 1301
+ N+H +++ +W+N ++ T+L EL + D N
Sbjct: 139 I--------NIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNN 189
Query: 1302 LKALPN-CMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLP 1353
L+ LPN H + +IL+I + S P G NL+ L R K LP
Sbjct: 190 LEELPNDVFHGASGPVILDISRT-RIHSLPSYGL-ENLKKLRARSTYNLKKLP 240
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 25/185 (13%)
Query: 665 MGNLRKLHHLRNSTANSLKEM-PKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGT 723
NL KLH +R AN+L + P+ F L +L L S +G++ L + +
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL------LISNTGIKHLPDVHKIHSL 128
Query: 724 LRISKLENVKDVGDASEAQLNNKVNL--EALLLKWSARDVQNLDQCEFETHVLSVLK--P 779
++ L +++D + + N+ V L E+++L + +Q + F L L
Sbjct: 129 QKV--LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 780 HRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTSTSLPSVGQLPFLKELRISGMD 839
+ +++EL + G P+ L++ R SLPS G L LK+LR
Sbjct: 187 NNNLEELPNDVFHGASGPVI-----------LDISRTRIHSLPSYG-LENLKKLRARSTY 234
Query: 840 GVKSV 844
+K +
Sbjct: 235 NLKKL 239
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 1029 LSSLTEMRISGCASLVSFPQAALPSHLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRN 1088
++S+ + C +L + + ++TV C+ +L + + NS++E+L+ R
Sbjct: 251 VTSIGSFLLQNCTALKTL---NFYAKVKTVPYLLCSGCSNLTK--VVXDNSAIETLEPRV 305
Query: 1089 CNSLVSFPEVALPSQLRTVKI---EYCNAL--ISLPEAWMQNSNTSLESLRIKGCDSLKY 1143
V V LP+ L+T+++ + C AL IS P+ S T +ES +G KY
Sbjct: 306 FXDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK-----SITLIESGAFEGSSITKY 360
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 11/135 (8%)
Query: 1259 ADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLIL 1318
ADL L + W + C +S + ++ E C + + P + N+ +
Sbjct: 7 ADLSPLLEANRKWADECAAKDSTYFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVF 66
Query: 1319 EIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSP 1378
R ++VS + + L+ V LKI L +N CG C +
Sbjct: 67 VQRNVGNLVSNKDLNCMSCLE-YTVDHLKIKHILVCGHYN----------CGACKAGLVW 115
Query: 1379 PPFPASLTNLWISDM 1393
P A +TNLWISD+
Sbjct: 116 HPKTAGVTNLWISDV 130
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 11 ASVELLIEKLASKGLELFTRHKKLEADFIKWKRMLKMIKAVLADAED--RQTKDESVKTW 68
A++ LI KL E F HK ++ + + L+ A L + R+ D K W
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 69 LDDLQNLAYDAEDV 82
D+++ L+Y EDV
Sbjct: 61 ADEVRELSYVIEDV 74
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 609 GNIFNL-PNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILL 652
GN F L P E+ N KHL ++LS RI L +S +++ L T++L
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,402,939
Number of Sequences: 62578
Number of extensions: 1589975
Number of successful extensions: 3618
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3566
Number of HSP's gapped (non-prelim): 52
length of query: 1472
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1361
effective length of database: 8,027,179
effective search space: 10924990619
effective search space used: 10924990619
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)