Query 000471
Match_columns 1472
No_of_seqs 771 out of 5716
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.8E-83 1.5E-87 793.3 49.8 642 26-706 18-678 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-62 3.3E-67 652.4 49.7 693 184-1144 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.9E-41 1.3E-45 383.4 12.0 277 191-474 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 7.8E-38 1.7E-42 420.1 29.3 180 1241-1444 428-608 (968)
5 PLN00113 leucine-rich repeat r 100.0 5.2E-37 1.1E-41 412.2 25.1 510 592-1347 87-605 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 1.7E-28 3.7E-33 258.9 -10.2 149 1220-1374 390-541 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 3.2E-28 6.8E-33 256.8 -11.8 105 1242-1349 436-541 (565)
8 KOG4194 Membrane glycoprotein 99.9 2.8E-26 6.1E-31 253.0 2.2 375 1006-1456 78-464 (873)
9 KOG0618 Serine/threonine phosp 99.9 5.9E-26 1.3E-30 265.1 -2.3 131 1239-1373 357-488 (1081)
10 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.4E-27 270.2 24.5 309 1004-1370 556-878 (1153)
11 KOG4194 Membrane glycoprotein 99.9 3.8E-23 8.2E-28 228.5 8.1 343 1051-1444 76-430 (873)
12 KOG0618 Serine/threonine phosp 99.9 1.9E-24 4E-29 252.7 -2.7 368 594-1138 41-417 (1081)
13 KOG0444 Cytoskeletal regulator 99.9 2.3E-23 5.1E-28 230.9 -3.6 335 1005-1443 31-375 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 2.8E-23 6E-28 230.3 -4.0 368 596-1119 5-379 (1255)
15 PRK15387 E3 ubiquitin-protein 99.6 1.4E-14 3E-19 178.2 16.7 98 1314-1422 363-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 4.9E-14 1.1E-18 173.4 16.7 157 1264-1443 301-458 (788)
17 PRK15370 E3 ubiquitin-protein 99.4 9.7E-13 2.1E-17 163.6 12.2 99 1265-1372 325-426 (754)
18 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3E-17 162.3 12.1 82 598-688 178-259 (754)
19 PRK04841 transcriptional regul 99.4 2.9E-11 6.3E-16 162.6 24.5 294 186-521 14-332 (903)
20 KOG0617 Ras suppressor protein 99.3 2.6E-14 5.5E-19 134.2 -4.5 100 597-698 32-132 (264)
21 KOG4237 Extracellular matrix p 99.3 1.1E-13 2.3E-18 147.9 -2.5 113 780-906 66-180 (498)
22 KOG4237 Extracellular matrix p 99.3 8.7E-14 1.9E-18 148.6 -5.3 252 1202-1457 51-372 (498)
23 PRK00411 cdc6 cell division co 99.3 3.5E-10 7.5E-15 135.6 24.0 301 184-499 28-357 (394)
24 KOG0617 Ras suppressor protein 99.3 2.5E-13 5.4E-18 127.7 -3.5 86 611-699 23-108 (264)
25 KOG4658 Apoptotic ATPase [Sign 99.3 3.2E-12 7E-17 161.5 5.1 286 596-902 543-843 (889)
26 TIGR02928 orc1/cdc6 family rep 99.2 4.5E-09 9.7E-14 124.7 26.1 301 186-500 15-350 (365)
27 TIGR03015 pepcterm_ATPase puta 99.1 5.7E-09 1.2E-13 118.0 21.2 182 213-400 43-242 (269)
28 TIGR00635 ruvB Holliday juncti 99.0 7.9E-09 1.7E-13 118.9 18.7 276 186-501 4-290 (305)
29 COG2909 MalT ATP-dependent tra 99.0 1.6E-08 3.5E-13 120.7 19.9 291 196-523 25-340 (894)
30 PRK00080 ruvB Holliday junctio 99.0 1.6E-08 3.5E-13 116.8 19.5 276 186-501 25-311 (328)
31 PF01637 Arch_ATPase: Archaeal 99.0 2E-09 4.4E-14 119.3 11.4 194 188-395 1-233 (234)
32 cd00116 LRR_RI Leucine-rich re 98.9 4.2E-11 9E-16 139.9 -4.4 180 1194-1373 23-233 (319)
33 cd00116 LRR_RI Leucine-rich re 98.9 5.4E-11 1.2E-15 139.0 -4.2 108 1243-1350 110-235 (319)
34 PTZ00112 origin recognition co 98.9 7.6E-08 1.6E-12 115.5 20.4 302 185-500 754-1086(1164)
35 PF05729 NACHT: NACHT domain 98.8 1.1E-08 2.5E-13 106.2 10.5 144 214-363 1-163 (166)
36 KOG4341 F-box protein containi 98.8 1.3E-10 2.7E-15 126.1 -5.2 296 1054-1414 139-459 (483)
37 KOG4341 F-box protein containi 98.8 1.6E-10 3.5E-15 125.4 -5.5 136 1008-1143 140-283 (483)
38 COG3899 Predicted ATPase [Gene 98.6 4.2E-07 9.1E-12 116.4 17.3 311 188-519 2-384 (849)
39 PRK06893 DNA replication initi 98.6 5.7E-07 1.2E-11 97.6 15.1 156 213-400 39-207 (229)
40 COG2256 MGS1 ATPase related to 98.6 2.8E-07 6.1E-12 101.0 11.6 172 185-393 29-209 (436)
41 COG4886 Leucine-rich repeat (L 98.6 4.4E-08 9.4E-13 117.7 5.2 180 594-843 112-292 (394)
42 KOG0532 Leucine-rich repeat (L 98.6 3E-09 6.4E-14 119.9 -4.6 174 593-838 93-270 (722)
43 PRK15386 type III secretion pr 98.6 2.5E-07 5.5E-12 104.6 10.3 160 1262-1443 49-213 (426)
44 KOG1259 Nischarin, modulator o 98.5 1.6E-08 3.4E-13 104.6 0.4 132 1261-1420 280-412 (490)
45 KOG3207 Beta-tubulin folding c 98.5 1.4E-08 3.1E-13 111.1 0.1 156 1261-1417 168-336 (505)
46 KOG3207 Beta-tubulin folding c 98.5 1.5E-08 3.2E-13 111.0 0.0 198 1241-1443 121-339 (505)
47 PRK13342 recombination factor 98.5 1E-06 2.2E-11 104.9 14.6 177 187-398 13-198 (413)
48 PRK14961 DNA polymerase III su 98.5 4.6E-06 9.9E-11 97.4 18.5 194 186-395 16-219 (363)
49 TIGR03420 DnaA_homol_Hda DnaA 98.5 2E-06 4.4E-11 94.2 14.8 171 191-399 22-204 (226)
50 PRK05564 DNA polymerase III su 98.4 4.6E-06 1E-10 95.7 17.5 179 187-396 5-190 (313)
51 PRK14960 DNA polymerase III su 98.4 4.1E-06 9E-11 100.0 17.1 194 186-396 15-219 (702)
52 PRK07003 DNA polymerase III su 98.4 4.1E-06 8.8E-11 101.1 17.1 196 186-398 16-223 (830)
53 PRK12402 replication factor C 98.4 3.3E-06 7.2E-11 99.1 16.3 197 186-395 15-225 (337)
54 PRK14949 DNA polymerase III su 98.4 5.1E-06 1.1E-10 102.5 17.3 195 186-396 16-220 (944)
55 PRK14963 DNA polymerase III su 98.4 1.5E-06 3.2E-11 104.4 12.5 198 186-393 14-214 (504)
56 KOG1259 Nischarin, modulator o 98.4 5.1E-08 1.1E-12 100.9 -0.0 127 1309-1442 280-411 (490)
57 PF13401 AAA_22: AAA domain; P 98.4 5.9E-07 1.3E-11 88.8 7.5 117 213-332 4-125 (131)
58 KOG0532 Leucine-rich repeat (L 98.4 2.2E-08 4.7E-13 113.1 -4.3 170 599-840 76-246 (722)
59 PRK04195 replication factor C 98.4 1.5E-05 3.3E-10 97.1 19.6 247 186-473 14-271 (482)
60 PRK12323 DNA polymerase III su 98.3 9.9E-06 2.2E-10 96.6 16.5 199 186-396 16-225 (700)
61 PF14580 LRR_9: Leucine-rich r 98.3 7.4E-07 1.6E-11 90.1 5.8 106 596-705 40-152 (175)
62 PF13191 AAA_16: AAA ATPase do 98.3 1.4E-06 3E-11 92.3 8.1 48 187-237 1-48 (185)
63 PLN03025 replication factor C 98.3 1.1E-05 2.5E-10 92.7 16.1 183 186-394 13-198 (319)
64 cd00009 AAA The AAA+ (ATPases 98.3 4.2E-06 9.1E-11 85.1 11.1 125 189-334 1-131 (151)
65 PRK14956 DNA polymerase III su 98.3 4.5E-06 9.8E-11 97.2 12.3 192 186-393 18-219 (484)
66 PF13173 AAA_14: AAA domain 98.3 1.4E-06 3E-11 85.1 6.9 119 214-355 3-127 (128)
67 PRK06645 DNA polymerase III su 98.3 1.9E-05 4.1E-10 94.4 17.8 195 186-393 21-226 (507)
68 PRK00440 rfc replication facto 98.3 1.7E-05 3.7E-10 92.3 16.9 181 186-394 17-201 (319)
69 TIGR02903 spore_lon_C ATP-depe 98.3 1.4E-05 3E-10 99.3 16.7 203 187-399 155-398 (615)
70 PTZ00202 tuzin; Provisional 98.3 2.5E-05 5.3E-10 87.7 16.7 171 181-363 257-434 (550)
71 PRK14957 DNA polymerase III su 98.3 1.9E-05 4.2E-10 94.8 17.2 185 186-398 16-223 (546)
72 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.3E-11 72.8 4.3 58 598-656 1-60 (61)
73 PF14580 LRR_9: Leucine-rich r 98.2 7.8E-07 1.7E-11 90.0 4.1 86 595-685 16-103 (175)
74 PRK05896 DNA polymerase III su 98.2 1.7E-05 3.7E-10 95.1 15.9 197 186-398 16-223 (605)
75 KOG2028 ATPase related to the 98.2 1.6E-05 3.4E-10 85.3 13.7 157 212-391 161-331 (554)
76 cd01128 rho_factor Transcripti 98.2 1.8E-06 3.8E-11 93.5 6.8 91 213-304 16-114 (249)
77 COG1474 CDC6 Cdc6-related prot 98.2 6.1E-05 1.3E-09 86.7 19.7 207 188-398 19-240 (366)
78 TIGR02397 dnaX_nterm DNA polym 98.2 3.7E-05 8.1E-10 90.9 18.8 182 187-397 15-219 (355)
79 PF05496 RuvB_N: Holliday junc 98.2 2E-05 4.2E-10 81.3 13.7 182 186-401 24-226 (233)
80 PRK08691 DNA polymerase III su 98.2 2.1E-05 4.5E-10 95.3 16.1 194 186-396 16-220 (709)
81 PRK07994 DNA polymerase III su 98.2 2.1E-05 4.5E-10 96.1 16.1 195 186-396 16-220 (647)
82 PRK08727 hypothetical protein; 98.2 2.4E-05 5.1E-10 85.2 15.0 148 214-393 42-201 (233)
83 PRK15386 type III secretion pr 98.2 4.7E-06 1E-10 94.5 9.7 136 1287-1441 50-188 (426)
84 PRK14951 DNA polymerase III su 98.2 3.4E-05 7.3E-10 94.1 17.5 197 186-396 16-225 (618)
85 PRK14962 DNA polymerase III su 98.2 3.6E-05 7.7E-10 91.9 17.3 186 186-399 14-222 (472)
86 PRK14964 DNA polymerase III su 98.2 4E-05 8.7E-10 90.7 17.3 180 186-393 13-214 (491)
87 COG4886 Leucine-rich repeat (L 98.2 1.3E-06 2.8E-11 105.0 4.9 175 1241-1423 116-293 (394)
88 TIGR00678 holB DNA polymerase 98.2 5.1E-05 1.1E-09 80.1 16.4 91 292-392 95-187 (188)
89 PRK08084 DNA replication initi 98.2 3.3E-05 7.1E-10 84.2 15.3 156 213-400 45-213 (235)
90 PRK14958 DNA polymerase III su 98.2 3.3E-05 7.2E-10 93.2 16.7 182 186-395 16-219 (509)
91 PRK13341 recombination factor 98.2 2.5E-05 5.4E-10 97.7 15.8 171 186-393 28-214 (725)
92 PLN03150 hypothetical protein; 98.2 2.2E-06 4.7E-11 107.5 6.5 107 1243-1349 420-528 (623)
93 PRK09087 hypothetical protein; 98.2 5.4E-05 1.2E-09 81.5 16.2 143 213-398 44-197 (226)
94 PRK07471 DNA polymerase III su 98.1 7E-05 1.5E-09 86.4 18.1 196 185-397 18-239 (365)
95 COG3903 Predicted ATPase [Gene 98.1 3E-06 6.5E-11 94.0 6.4 287 212-518 13-311 (414)
96 PRK07940 DNA polymerase III su 98.1 6.3E-05 1.4E-09 87.5 17.4 194 187-397 6-214 (394)
97 PRK08903 DnaA regulatory inact 98.1 3.3E-05 7.2E-10 84.4 14.4 152 213-400 42-203 (227)
98 PRK14955 DNA polymerase III su 98.1 4.1E-05 9E-10 90.6 16.0 201 186-395 16-227 (397)
99 PRK09376 rho transcription ter 98.1 5E-06 1.1E-10 93.1 7.5 91 213-304 169-267 (416)
100 PRK05642 DNA replication initi 98.1 4.8E-05 1E-09 82.8 14.8 156 213-400 45-212 (234)
101 PLN03150 hypothetical protein; 98.1 3.2E-06 7E-11 106.0 6.5 94 599-692 419-513 (623)
102 PRK09112 DNA polymerase III su 98.1 0.00011 2.5E-09 84.2 18.3 198 185-397 22-241 (351)
103 PRK14969 DNA polymerase III su 98.1 7.8E-05 1.7E-09 90.8 18.0 183 186-396 16-221 (527)
104 PF00308 Bac_DnaA: Bacterial d 98.1 4.2E-05 9.2E-10 82.0 13.4 187 187-399 10-211 (219)
105 COG2255 RuvB Holliday junction 98.0 7.1E-05 1.5E-09 78.4 13.7 279 186-502 26-313 (332)
106 PRK09111 DNA polymerase III su 98.0 0.0001 2.2E-09 90.4 17.4 199 186-397 24-234 (598)
107 PRK07133 DNA polymerase III su 98.0 0.00015 3.3E-09 89.0 18.4 193 186-395 18-218 (725)
108 PRK14959 DNA polymerase III su 98.0 0.00013 2.8E-09 88.3 17.1 199 186-400 16-225 (624)
109 PRK14970 DNA polymerase III su 98.0 0.00019 4.1E-09 84.9 17.9 181 186-393 17-206 (367)
110 KOG2120 SCF ubiquitin ligase, 98.0 6E-08 1.3E-12 100.6 -10.0 130 1241-1370 185-322 (419)
111 PRK14952 DNA polymerase III su 98.0 0.0002 4.4E-09 87.1 18.1 199 186-400 13-224 (584)
112 PRK14950 DNA polymerase III su 98.0 0.00013 2.7E-09 90.8 16.8 197 186-397 16-222 (585)
113 PRK08451 DNA polymerase III su 97.9 0.00026 5.6E-09 84.8 18.1 194 186-396 14-218 (535)
114 PRK14954 DNA polymerase III su 97.9 0.00029 6.3E-09 86.5 18.9 197 186-391 16-223 (620)
115 TIGR01242 26Sp45 26S proteasom 97.9 4.9E-05 1.1E-09 89.3 11.9 181 184-390 120-328 (364)
116 PRK14087 dnaA chromosomal repl 97.9 0.00021 4.6E-09 85.4 17.0 171 213-400 141-323 (450)
117 PRK14953 DNA polymerase III su 97.9 0.00042 9.2E-09 83.3 19.3 184 186-397 16-221 (486)
118 PF13855 LRR_8: Leucine rich r 97.9 1.5E-05 3.3E-10 65.8 4.9 59 1265-1324 1-60 (61)
119 PRK06305 DNA polymerase III su 97.9 0.00028 6E-09 84.4 17.3 185 186-396 17-223 (451)
120 PRK07764 DNA polymerase III su 97.9 0.00026 5.6E-09 89.9 17.7 191 187-393 16-218 (824)
121 KOG2120 SCF ubiquitin ligase, 97.9 4.4E-07 9.6E-12 94.3 -5.9 89 1053-1143 185-275 (419)
122 KOG2227 Pre-initiation complex 97.9 0.00027 5.9E-09 79.5 15.1 214 184-400 148-376 (529)
123 PRK14971 DNA polymerase III su 97.9 0.00039 8.4E-09 86.1 18.2 177 186-394 17-220 (614)
124 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 60.0 3.4 39 599-638 2-40 (44)
125 PRK06620 hypothetical protein; 97.9 0.00035 7.6E-09 74.5 15.4 139 214-397 45-190 (214)
126 PRK14948 DNA polymerase III su 97.8 0.00043 9.3E-09 85.7 18.3 197 186-396 16-222 (620)
127 TIGR00767 rho transcription te 97.8 2.9E-05 6.2E-10 87.8 7.2 91 213-304 168-266 (415)
128 KOG2543 Origin recognition com 97.8 0.00071 1.5E-08 74.2 16.8 170 185-362 5-192 (438)
129 KOG0989 Replication factor C, 97.8 6.4E-05 1.4E-09 79.7 8.5 184 186-391 36-225 (346)
130 PF05673 DUF815: Protein of un 97.8 0.00042 9.1E-09 72.8 14.4 126 183-336 24-154 (249)
131 PHA02544 44 clamp loader, smal 97.8 0.00017 3.6E-09 83.6 13.0 148 186-361 21-171 (316)
132 PRK06647 DNA polymerase III su 97.8 0.00075 1.6E-08 82.5 18.9 195 186-396 16-220 (563)
133 CHL00181 cbbX CbbX; Provisiona 97.8 0.00088 1.9E-08 75.0 17.8 135 214-365 60-211 (287)
134 PF05621 TniB: Bacterial TniB 97.8 0.00057 1.2E-08 74.3 15.4 196 193-393 44-258 (302)
135 KOG0531 Protein phosphatase 1, 97.7 6.5E-06 1.4E-10 98.8 0.0 100 594-698 91-191 (414)
136 TIGR00362 DnaA chromosomal rep 97.7 0.00058 1.3E-08 81.7 16.7 160 213-395 136-309 (405)
137 TIGR02881 spore_V_K stage V sp 97.7 0.00042 9.1E-09 77.3 14.2 161 187-364 7-192 (261)
138 PRK14965 DNA polymerase III su 97.7 0.00069 1.5E-08 83.8 17.1 195 186-396 16-221 (576)
139 PRK11331 5-methylcytosine-spec 97.7 0.00013 2.8E-09 84.1 9.4 111 186-309 175-288 (459)
140 PRK03992 proteasome-activating 97.7 0.0002 4.4E-09 84.3 11.2 179 185-389 130-336 (389)
141 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00042 9E-09 89.4 14.8 182 186-389 187-389 (852)
142 PRK05563 DNA polymerase III su 97.7 0.0016 3.5E-08 80.2 19.0 193 186-394 16-218 (559)
143 TIGR02639 ClpA ATP-dependent C 97.6 0.00035 7.6E-09 89.7 13.7 156 187-363 183-358 (731)
144 PRK12422 chromosomal replicati 97.6 0.0013 2.7E-08 78.4 17.1 155 213-390 141-307 (445)
145 PRK14088 dnaA chromosomal repl 97.6 0.0006 1.3E-08 81.5 14.2 161 213-395 130-304 (440)
146 TIGR02880 cbbX_cfxQ probable R 97.6 0.0012 2.5E-08 74.1 15.5 133 215-364 60-209 (284)
147 KOG0531 Protein phosphatase 1, 97.6 1.7E-05 3.8E-10 95.1 0.6 175 1261-1442 91-289 (414)
148 PRK00149 dnaA chromosomal repl 97.6 0.00077 1.7E-08 81.7 14.8 160 213-395 148-321 (450)
149 PF12799 LRR_4: Leucine Rich r 97.6 6E-05 1.3E-09 56.6 3.2 40 622-662 1-40 (44)
150 KOG1909 Ran GTPase-activating 97.6 1.1E-05 2.4E-10 86.8 -1.3 90 590-680 22-131 (382)
151 KOG1909 Ran GTPase-activating 97.6 9.3E-06 2E-10 87.3 -2.0 223 1217-1442 29-310 (382)
152 PRK05707 DNA polymerase III su 97.5 0.0016 3.4E-08 74.3 15.5 97 292-396 105-203 (328)
153 PF14516 AAA_35: AAA-like doma 97.5 0.0047 1E-07 71.2 19.4 203 184-403 9-246 (331)
154 PRK07399 DNA polymerase III su 97.5 0.0019 4.1E-08 73.2 15.9 197 187-397 5-222 (314)
155 KOG2982 Uncharacterized conser 97.5 4.3E-05 9.3E-10 80.0 1.6 83 1241-1323 71-156 (418)
156 PRK14086 dnaA chromosomal repl 97.5 0.0018 3.9E-08 78.2 15.1 159 214-395 315-487 (617)
157 KOG1859 Leucine-rich repeat pr 97.4 5.7E-06 1.2E-10 96.5 -5.8 122 1266-1394 165-290 (1096)
158 CHL00095 clpC Clp protease ATP 97.4 0.00072 1.6E-08 87.9 11.7 155 187-362 180-353 (821)
159 PRK11034 clpA ATP-dependent Cl 97.4 0.0014 3.1E-08 82.7 13.4 156 187-363 187-362 (758)
160 TIGR03689 pup_AAA proteasome A 97.4 0.0017 3.6E-08 77.6 13.3 167 186-363 182-378 (512)
161 PF00004 AAA: ATPase family as 97.4 0.00037 7.9E-09 68.9 6.7 70 216-306 1-71 (132)
162 KOG2004 Mitochondrial ATP-depe 97.3 0.0035 7.6E-08 74.2 15.1 107 185-304 410-516 (906)
163 TIGR00602 rad24 checkpoint pro 97.3 0.0015 3.3E-08 80.1 12.7 209 185-399 83-326 (637)
164 KOG1859 Leucine-rich repeat pr 97.3 1.2E-05 2.7E-10 93.7 -5.2 177 1258-1445 102-294 (1096)
165 PTZ00361 26 proteosome regulat 97.3 0.00057 1.2E-08 80.4 8.3 158 186-364 183-368 (438)
166 PRK08769 DNA polymerase III su 97.3 0.0079 1.7E-07 67.9 17.0 187 193-397 11-209 (319)
167 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0024 5.3E-08 83.3 14.6 156 187-363 174-349 (852)
168 KOG4579 Leucine-rich repeat (L 97.2 3.8E-05 8.1E-10 71.0 -1.9 83 596-680 51-134 (177)
169 COG0593 DnaA ATPase involved i 97.2 0.0032 6.9E-08 72.2 13.0 160 185-365 87-259 (408)
170 PRK08116 hypothetical protein; 97.2 0.001 2.2E-08 73.8 8.8 104 214-333 115-221 (268)
171 KOG1947 Leucine rich repeat pr 97.2 8.8E-05 1.9E-09 92.5 0.2 63 1102-1164 243-308 (482)
172 PTZ00454 26S protease regulato 97.2 0.003 6.4E-08 74.0 12.6 179 186-390 145-351 (398)
173 PRK06090 DNA polymerase III su 97.2 0.011 2.3E-07 66.8 16.4 179 193-397 10-202 (319)
174 PRK08058 DNA polymerase III su 97.2 0.0077 1.7E-07 69.3 15.8 163 188-362 7-181 (329)
175 smart00382 AAA ATPases associa 97.1 0.002 4.3E-08 64.7 9.5 88 214-306 3-91 (148)
176 PRK06871 DNA polymerase III su 97.1 0.017 3.6E-07 65.4 17.2 177 194-393 10-200 (325)
177 PF13177 DNA_pol3_delta2: DNA 97.1 0.0057 1.2E-07 62.2 11.9 136 190-350 1-161 (162)
178 PRK10536 hypothetical protein; 97.0 0.0091 2E-07 63.9 13.3 134 187-333 56-213 (262)
179 KOG0741 AAA+-type ATPase [Post 97.0 0.01 2.2E-07 67.8 14.2 161 211-400 536-716 (744)
180 PRK10865 protein disaggregatio 97.0 0.0051 1.1E-07 79.9 13.9 156 187-363 179-354 (857)
181 KOG1947 Leucine rich repeat pr 97.0 0.00015 3.3E-09 90.3 -0.4 133 1005-1137 187-330 (482)
182 CHL00176 ftsH cell division pr 97.0 0.0058 1.2E-07 75.9 13.3 177 186-388 183-386 (638)
183 COG3267 ExeA Type II secretory 97.0 0.028 6E-07 59.1 15.7 182 212-398 50-247 (269)
184 KOG1644 U2-associated snRNP A' 96.9 0.0014 3.1E-08 65.4 5.9 102 1289-1393 42-150 (233)
185 KOG4579 Leucine-rich repeat (L 96.9 0.00029 6.4E-09 65.3 0.9 99 598-699 27-129 (177)
186 PF04665 Pox_A32: Poxvirus A32 96.9 0.0018 4E-08 68.9 6.9 36 215-252 15-50 (241)
187 KOG3665 ZYG-1-like serine/thre 96.9 0.00088 1.9E-08 83.7 5.1 110 563-680 144-261 (699)
188 COG1373 Predicted ATPase (AAA+ 96.9 0.011 2.3E-07 69.8 13.8 136 191-359 22-163 (398)
189 COG2607 Predicted ATPase (AAA+ 96.9 0.018 3.8E-07 59.5 13.2 122 184-333 58-183 (287)
190 PRK10787 DNA-binding ATP-depen 96.9 0.024 5.1E-07 72.7 17.7 51 185-235 321-371 (784)
191 COG1222 RPT1 ATP-dependent 26S 96.9 0.011 2.4E-07 64.8 12.3 188 186-400 151-371 (406)
192 PRK08118 topology modulation p 96.9 0.00052 1.1E-08 70.2 2.3 34 215-248 3-37 (167)
193 PRK07993 DNA polymerase III su 96.9 0.039 8.5E-07 63.2 17.5 182 193-396 9-204 (334)
194 TIGR00763 lon ATP-dependent pr 96.8 0.014 3.1E-07 75.5 15.3 51 186-236 320-370 (775)
195 TIGR01241 FtsH_fam ATP-depende 96.8 0.017 3.7E-07 70.9 15.1 179 186-390 55-260 (495)
196 COG0466 Lon ATP-dependent Lon 96.8 0.0022 4.7E-08 76.5 6.8 166 185-363 322-508 (782)
197 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.7E-08 74.2 4.4 50 187-236 52-101 (361)
198 COG2812 DnaX DNA polymerase II 96.8 0.006 1.3E-07 72.3 10.1 189 187-391 17-215 (515)
199 TIGR02639 ClpA ATP-dependent C 96.7 0.031 6.7E-07 72.0 17.5 121 186-318 454-578 (731)
200 TIGR02640 gas_vesic_GvpN gas v 96.7 0.035 7.6E-07 61.7 15.6 56 193-261 9-64 (262)
201 PRK08939 primosomal protein Dn 96.7 0.005 1.1E-07 69.5 8.9 122 190-332 135-260 (306)
202 PRK08181 transposase; Validate 96.7 0.0026 5.5E-08 70.0 6.3 101 214-333 107-209 (269)
203 PRK13531 regulatory ATPase Rav 96.7 0.0063 1.4E-07 71.2 9.6 41 187-235 21-61 (498)
204 PRK09361 radB DNA repair and r 96.7 0.0073 1.6E-07 65.9 9.7 47 211-260 21-67 (225)
205 KOG1514 Origin recognition com 96.7 0.027 5.9E-07 67.3 14.4 208 187-400 397-625 (767)
206 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0069 1.5E-07 66.7 9.2 92 211-303 17-125 (235)
207 PRK06526 transposase; Provisio 96.6 0.0029 6.3E-08 69.3 5.9 100 214-333 99-201 (254)
208 PRK10865 protein disaggregatio 96.6 0.018 3.9E-07 74.9 14.0 137 186-332 568-720 (857)
209 PRK06964 DNA polymerase III su 96.6 0.033 7.2E-07 63.5 14.4 94 292-397 131-226 (342)
210 KOG2982 Uncharacterized conser 96.6 0.0035 7.7E-08 66.1 5.9 85 595-680 68-157 (418)
211 KOG2228 Origin recognition com 96.6 0.012 2.7E-07 63.6 10.0 172 187-363 25-219 (408)
212 PF10443 RNA12: RNA12 protein; 96.6 0.069 1.5E-06 61.2 16.4 200 191-406 1-288 (431)
213 PRK07952 DNA replication prote 96.5 0.0088 1.9E-07 64.8 8.9 103 213-332 99-204 (244)
214 PRK09183 transposase/IS protei 96.5 0.0051 1.1E-07 67.9 7.0 23 214-236 103-125 (259)
215 KOG0991 Replication factor C, 96.5 0.055 1.2E-06 55.3 13.3 44 186-235 27-70 (333)
216 PF07693 KAP_NTPase: KAP famil 96.5 0.064 1.4E-06 62.5 16.6 43 191-236 1-43 (325)
217 PRK12377 putative replication 96.5 0.0057 1.2E-07 66.4 7.1 101 214-332 102-205 (248)
218 PF01695 IstB_IS21: IstB-like 96.5 0.0033 7.1E-08 64.9 4.9 101 214-333 48-150 (178)
219 COG1223 Predicted ATPase (AAA+ 96.4 0.014 3.1E-07 60.5 9.0 179 186-390 121-319 (368)
220 TIGR03345 VI_ClpV1 type VI sec 96.4 0.008 1.7E-07 77.8 9.0 137 186-332 566-718 (852)
221 TIGR02237 recomb_radB DNA repa 96.4 0.011 2.3E-07 63.8 8.7 49 211-262 10-58 (209)
222 PRK06921 hypothetical protein; 96.4 0.0095 2.1E-07 65.9 8.4 37 213-251 117-154 (266)
223 TIGR02902 spore_lonB ATP-depen 96.4 0.017 3.6E-07 71.0 11.2 43 187-235 66-108 (531)
224 PRK12608 transcription termina 96.4 0.015 3.3E-07 65.9 9.8 104 194-303 119-230 (380)
225 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.015 3.3E-07 57.8 8.7 118 214-334 3-139 (159)
226 TIGR03346 chaperone_ClpB ATP-d 96.3 0.015 3.3E-07 76.0 11.0 138 186-332 565-717 (852)
227 PRK04132 replication factor C 96.3 0.071 1.5E-06 67.8 16.2 156 221-397 574-732 (846)
228 COG0470 HolB ATPase involved i 96.3 0.02 4.3E-07 66.9 10.8 142 187-349 2-167 (325)
229 PRK04296 thymidine kinase; Pro 96.3 0.0086 1.9E-07 62.9 6.7 114 214-334 3-117 (190)
230 KOG0733 Nuclear AAA ATPase (VC 96.3 0.069 1.5E-06 62.6 14.1 99 186-305 190-294 (802)
231 KOG3665 ZYG-1-like serine/thre 96.2 0.0037 8.1E-08 78.2 4.5 55 643-699 146-201 (699)
232 PF02562 PhoH: PhoH-like prote 96.2 0.012 2.6E-07 61.3 7.3 132 190-334 4-157 (205)
233 KOG2123 Uncharacterized conser 96.2 0.00027 5.9E-09 73.4 -4.7 98 1312-1413 18-123 (388)
234 PRK07261 topology modulation p 96.2 0.01 2.2E-07 61.1 6.6 22 215-236 2-23 (171)
235 KOG0728 26S proteasome regulat 96.1 0.055 1.2E-06 55.7 11.2 191 187-399 147-366 (404)
236 PRK08699 DNA polymerase III su 96.1 0.05 1.1E-06 62.1 12.1 71 292-362 112-184 (325)
237 PRK06835 DNA replication prote 96.0 0.0069 1.5E-07 68.9 5.0 102 214-332 184-288 (329)
238 PRK11889 flhF flagellar biosyn 96.0 0.058 1.3E-06 61.3 11.9 91 212-305 240-332 (436)
239 PF00448 SRP54: SRP54-type pro 96.0 0.018 3.9E-07 60.4 7.6 90 213-304 1-94 (196)
240 TIGR01243 CDC48 AAA family ATP 96.0 0.048 1E-06 70.6 13.2 180 186-391 178-382 (733)
241 KOG2035 Replication factor C, 96.0 0.063 1.4E-06 56.7 11.1 206 188-416 15-258 (351)
242 KOG0730 AAA+-type ATPase [Post 96.0 0.075 1.6E-06 63.3 13.1 172 187-380 435-631 (693)
243 COG0542 clpA ATP-binding subun 96.0 0.019 4.1E-07 71.1 8.7 122 186-319 491-619 (786)
244 cd00983 recA RecA is a bacter 96.0 0.013 2.8E-07 65.8 6.7 86 211-303 53-143 (325)
245 CHL00095 clpC Clp protease ATP 96.0 0.026 5.6E-07 73.7 10.6 137 186-332 509-661 (821)
246 TIGR02012 tigrfam_recA protein 96.0 0.014 3E-07 65.6 6.9 86 211-303 53-143 (321)
247 PF00560 LRR_1: Leucine Rich R 96.0 0.0031 6.8E-08 39.2 1.0 21 623-643 1-21 (22)
248 TIGR01243 CDC48 AAA family ATP 96.0 0.087 1.9E-06 68.3 15.1 179 186-390 453-657 (733)
249 cd01393 recA_like RecA is a b 95.9 0.04 8.6E-07 60.2 10.2 91 211-304 17-125 (226)
250 PF00158 Sigma54_activat: Sigm 95.9 0.018 4E-07 58.7 6.7 45 188-236 1-45 (168)
251 cd01394 radB RadB. The archaea 95.9 0.037 8.1E-07 60.0 9.6 44 211-256 17-60 (218)
252 PRK09354 recA recombinase A; P 95.8 0.019 4E-07 65.1 7.2 86 211-303 58-148 (349)
253 PRK15455 PrkA family serine pr 95.8 0.0058 1.3E-07 72.3 3.3 49 187-235 77-125 (644)
254 PF14532 Sigma54_activ_2: Sigm 95.8 0.0081 1.8E-07 59.5 3.9 107 189-332 1-109 (138)
255 PF13207 AAA_17: AAA domain; P 95.8 0.006 1.3E-07 59.0 2.9 21 215-235 1-21 (121)
256 PF08423 Rad51: Rad51; InterP 95.8 0.021 4.5E-07 62.9 7.4 56 212-268 37-96 (256)
257 PHA02244 ATPase-like protein 95.8 0.073 1.6E-06 60.3 11.3 42 187-236 97-142 (383)
258 cd01133 F1-ATPase_beta F1 ATP 95.8 0.02 4.4E-07 62.4 6.8 89 213-303 69-173 (274)
259 PRK05541 adenylylsulfate kinas 95.8 0.019 4.1E-07 59.8 6.5 36 212-249 6-41 (176)
260 PRK06696 uridine kinase; Valid 95.7 0.012 2.5E-07 63.9 5.0 43 190-235 2-44 (223)
261 CHL00195 ycf46 Ycf46; Provisio 95.7 0.047 1E-06 65.6 10.4 180 186-390 228-429 (489)
262 KOG1644 U2-associated snRNP A' 95.7 0.014 2.9E-07 58.7 4.8 93 773-869 56-151 (233)
263 KOG0731 AAA+-type ATPase conta 95.7 0.14 3E-06 63.3 14.2 182 186-392 311-520 (774)
264 PLN00020 ribulose bisphosphate 95.6 0.019 4E-07 64.3 6.0 26 211-236 146-171 (413)
265 KOG1969 DNA replication checkp 95.6 0.024 5.3E-07 67.7 7.2 77 211-306 324-400 (877)
266 KOG0733 Nuclear AAA ATPase (VC 95.6 0.26 5.6E-06 58.1 15.1 155 213-390 545-718 (802)
267 PRK13695 putative NTPase; Prov 95.6 0.022 4.7E-07 59.2 6.0 22 215-236 2-23 (174)
268 PF07728 AAA_5: AAA domain (dy 95.6 0.0055 1.2E-07 60.9 1.5 85 216-314 2-86 (139)
269 KOG2123 Uncharacterized conser 95.5 0.0014 3E-08 68.4 -2.9 105 596-704 17-128 (388)
270 TIGR02238 recomb_DMC1 meiotic 95.5 0.035 7.5E-07 62.9 7.9 59 211-270 94-156 (313)
271 COG1484 DnaC DNA replication p 95.5 0.038 8.3E-07 60.7 7.9 81 213-311 105-185 (254)
272 COG0468 RecA RecA/RadA recombi 95.5 0.062 1.4E-06 58.9 9.4 93 209-304 56-152 (279)
273 TIGR03499 FlhF flagellar biosy 95.5 0.043 9.2E-07 61.6 8.5 88 212-302 193-281 (282)
274 PRK06762 hypothetical protein; 95.5 0.099 2.1E-06 53.8 10.5 23 213-235 2-24 (166)
275 KOG0652 26S proteasome regulat 95.5 0.31 6.8E-06 50.7 13.5 49 187-235 172-227 (424)
276 PRK11034 clpA ATP-dependent Cl 95.5 0.049 1.1E-06 69.2 9.7 120 186-318 458-582 (758)
277 cd03238 ABC_UvrA The excision 95.4 0.089 1.9E-06 54.1 9.9 123 213-347 21-161 (176)
278 PRK04301 radA DNA repair and r 95.4 0.057 1.2E-06 62.1 9.4 58 211-269 100-161 (317)
279 PRK07132 DNA polymerase III su 95.4 0.72 1.6E-05 51.9 17.6 153 213-396 18-185 (299)
280 KOG2739 Leucine-rich acidic nu 95.4 0.011 2.4E-07 62.1 3.1 82 1311-1394 41-127 (260)
281 PLN03187 meiotic recombination 95.4 0.042 9E-07 62.7 7.9 59 211-270 124-186 (344)
282 KOG0735 AAA+-type ATPase [Post 95.4 0.025 5.3E-07 67.3 6.0 73 213-304 431-505 (952)
283 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.097 2.1E-06 56.2 10.0 123 214-338 31-204 (254)
284 KOG0734 AAA+-type ATPase conta 95.3 0.052 1.1E-06 62.4 8.1 98 186-304 304-407 (752)
285 COG1875 NYN ribonuclease and A 95.3 0.076 1.7E-06 58.5 9.1 132 189-332 227-387 (436)
286 cd03247 ABCC_cytochrome_bd The 95.3 0.06 1.3E-06 56.1 8.3 126 214-347 29-169 (178)
287 cd01120 RecA-like_NTPases RecA 95.3 0.065 1.4E-06 55.1 8.5 40 215-256 1-40 (165)
288 TIGR02239 recomb_RAD51 DNA rep 95.2 0.062 1.3E-06 61.1 8.8 58 211-269 94-155 (316)
289 KOG0744 AAA+-type ATPase [Post 95.2 0.05 1.1E-06 58.6 7.3 81 213-304 177-261 (423)
290 KOG2739 Leucine-rich acidic nu 95.2 0.011 2.4E-07 62.2 2.5 102 1334-1440 41-153 (260)
291 PRK00771 signal recognition pa 95.2 0.12 2.6E-06 61.2 11.1 91 211-304 93-186 (437)
292 TIGR00708 cobA cob(I)alamin ad 95.2 0.11 2.4E-06 52.4 9.3 117 214-334 6-141 (173)
293 COG0563 Adk Adenylate kinase a 95.2 0.031 6.7E-07 57.5 5.6 22 215-236 2-23 (178)
294 PF13604 AAA_30: AAA domain; P 95.1 0.021 4.5E-07 60.3 4.3 108 214-334 19-132 (196)
295 PRK08233 hypothetical protein; 95.1 0.057 1.2E-06 56.7 7.6 24 213-236 3-26 (182)
296 COG0542 clpA ATP-binding subun 95.1 0.051 1.1E-06 67.5 7.9 155 187-363 171-346 (786)
297 PRK14722 flhF flagellar biosyn 95.1 0.056 1.2E-06 62.1 7.8 90 213-305 137-227 (374)
298 COG1618 Predicted nucleotide k 95.1 0.019 4E-07 55.5 3.2 23 214-236 6-28 (179)
299 COG5238 RNA1 Ran GTPase-activa 95.1 0.0072 1.6E-07 63.0 0.5 88 596-685 28-135 (388)
300 cd03214 ABC_Iron-Siderophores_ 95.0 0.18 3.9E-06 52.6 10.9 123 213-338 25-163 (180)
301 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.17 3.8E-06 50.3 10.1 106 213-338 26-132 (144)
302 PTZ00035 Rad51 protein; Provis 94.9 0.12 2.5E-06 59.5 9.9 58 211-269 116-177 (337)
303 PRK11608 pspF phage shock prot 94.9 0.064 1.4E-06 61.7 7.8 133 187-332 7-150 (326)
304 TIGR02236 recomb_radA DNA repa 94.9 0.1 2.2E-06 60.0 9.5 58 211-269 93-154 (310)
305 PF00154 RecA: recA bacterial 94.9 0.062 1.3E-06 60.2 7.3 87 211-304 51-142 (322)
306 cd03223 ABCD_peroxisomal_ALDP 94.9 0.21 4.5E-06 51.3 10.7 119 213-337 27-152 (166)
307 cd03228 ABCC_MRP_Like The MRP 94.9 0.15 3.3E-06 52.6 9.8 126 213-347 28-167 (171)
308 PRK06067 flagellar accessory p 94.8 0.13 2.8E-06 56.5 9.6 88 211-303 23-130 (234)
309 PRK05703 flhF flagellar biosyn 94.8 0.17 3.7E-06 60.1 11.2 89 213-304 221-310 (424)
310 TIGR00959 ffh signal recogniti 94.8 0.13 2.7E-06 60.8 9.8 24 212-235 98-121 (428)
311 PRK12727 flagellar biosynthesi 94.7 0.12 2.5E-06 61.5 9.3 90 212-304 349-439 (559)
312 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.046 9.9E-07 58.5 5.6 120 213-339 29-160 (213)
313 PLN03186 DNA repair protein RA 94.7 0.13 2.9E-06 58.7 9.6 59 211-270 121-183 (342)
314 TIGR01817 nifA Nif-specific re 94.7 0.23 5.1E-06 61.9 12.7 135 185-332 195-340 (534)
315 PRK00625 shikimate kinase; Pro 94.7 0.22 4.8E-06 51.1 10.2 21 215-235 2-22 (173)
316 PRK10867 signal recognition pa 94.7 0.13 2.8E-06 60.7 9.7 25 211-235 98-122 (433)
317 cd03216 ABC_Carb_Monos_I This 94.7 0.097 2.1E-06 53.5 7.7 117 214-338 27-147 (163)
318 COG0572 Udk Uridine kinase [Nu 94.7 0.067 1.4E-06 55.7 6.4 79 211-294 6-85 (218)
319 KOG1051 Chaperone HSP104 and r 94.7 0.12 2.6E-06 65.2 9.8 118 187-317 563-684 (898)
320 COG4608 AppF ABC-type oligopep 94.7 0.093 2E-06 56.3 7.5 125 213-341 39-178 (268)
321 cd01122 GP4d_helicase GP4d_hel 94.7 0.23 4.9E-06 56.0 11.4 53 213-268 30-82 (271)
322 PRK05986 cob(I)alamin adenolsy 94.7 0.11 2.4E-06 53.2 7.8 120 213-334 22-159 (191)
323 COG2884 FtsE Predicted ATPase 94.6 0.31 6.8E-06 48.8 10.4 61 280-340 142-204 (223)
324 PF13671 AAA_33: AAA domain; P 94.6 0.064 1.4E-06 53.6 6.1 21 215-235 1-21 (143)
325 PRK14974 cell division protein 94.6 0.19 4.1E-06 57.3 10.4 91 212-305 139-234 (336)
326 TIGR01650 PD_CobS cobaltochela 94.6 0.67 1.4E-05 52.2 14.3 40 188-235 47-86 (327)
327 TIGR00064 ftsY signal recognit 94.6 0.15 3.2E-06 56.8 9.2 92 211-305 70-166 (272)
328 PRK12724 flagellar biosynthesi 94.6 0.092 2E-06 60.7 7.7 24 212-235 222-245 (432)
329 cd03246 ABCC_Protease_Secretio 94.5 0.15 3.3E-06 52.7 8.8 128 214-347 29-168 (173)
330 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.042 9.2E-07 61.4 4.7 51 185-235 60-110 (358)
331 TIGR02974 phageshock_pspF psp 94.4 0.1 2.2E-06 60.0 7.9 45 188-236 1-45 (329)
332 PRK07667 uridine kinase; Provi 94.4 0.052 1.1E-06 57.3 5.0 37 195-235 3-39 (193)
333 PRK12723 flagellar biosynthesi 94.4 0.2 4.3E-06 58.3 10.0 90 212-305 173-266 (388)
334 cd01131 PilT Pilus retraction 94.3 0.051 1.1E-06 57.6 4.9 110 214-336 2-112 (198)
335 cd03222 ABC_RNaseL_inhibitor T 94.3 0.23 5.1E-06 51.1 9.5 103 214-338 26-137 (177)
336 PTZ00301 uridine kinase; Provi 94.3 0.075 1.6E-06 56.3 6.1 23 213-235 3-25 (210)
337 cd03115 SRP The signal recogni 94.3 0.14 3.1E-06 53.0 8.1 21 215-235 2-22 (173)
338 PRK15429 formate hydrogenlyase 94.3 0.15 3.2E-06 65.7 9.8 134 187-333 377-521 (686)
339 TIGR00390 hslU ATP-dependent p 94.3 0.11 2.5E-06 59.7 7.6 51 186-236 12-70 (441)
340 PF00006 ATP-synt_ab: ATP synt 94.2 0.11 2.4E-06 55.1 7.0 83 214-302 16-114 (215)
341 PRK10733 hflB ATP-dependent me 94.2 0.32 7E-06 61.5 12.3 156 187-363 153-335 (644)
342 PF07724 AAA_2: AAA domain (Cd 94.2 0.036 7.8E-07 56.7 3.2 40 213-254 3-43 (171)
343 PF01583 APS_kinase: Adenylyls 94.2 0.062 1.3E-06 53.3 4.6 36 213-250 2-37 (156)
344 PRK13948 shikimate kinase; Pro 94.1 0.4 8.7E-06 49.6 10.7 24 212-235 9-32 (182)
345 PF03215 Rad17: Rad17 cell cyc 94.1 0.14 3E-06 62.2 8.4 59 187-250 20-78 (519)
346 cd03230 ABC_DR_subfamily_A Thi 94.1 0.32 7E-06 50.3 10.2 120 213-338 26-160 (173)
347 PRK06547 hypothetical protein; 94.1 0.064 1.4E-06 55.0 4.8 26 211-236 13-38 (172)
348 PTZ00494 tuzin-like protein; P 94.1 2 4.4E-05 49.2 16.4 170 182-363 367-544 (664)
349 cd01125 repA Hexameric Replica 94.1 0.24 5.2E-06 54.5 9.6 21 215-235 3-23 (239)
350 cd01121 Sms Sms (bacterial rad 94.0 0.29 6.2E-06 57.0 10.3 85 212-304 81-169 (372)
351 COG0464 SpoVK ATPases of the A 94.0 0.38 8.3E-06 59.5 12.2 157 187-364 243-424 (494)
352 PRK05439 pantothenate kinase; 94.0 0.26 5.6E-06 55.3 9.5 82 210-294 83-166 (311)
353 COG5238 RNA1 Ran GTPase-activa 93.9 0.012 2.6E-07 61.4 -0.8 88 616-703 24-130 (388)
354 KOG0727 26S proteasome regulat 93.9 0.27 5.8E-06 50.9 8.6 51 186-236 155-212 (408)
355 PF00560 LRR_1: Leucine Rich R 93.9 0.028 6.1E-07 34.9 1.1 22 599-621 1-22 (22)
356 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.31 6.6E-06 53.5 10.1 49 211-263 19-67 (237)
357 cd02019 NK Nucleoside/nucleoti 93.9 0.04 8.7E-07 46.6 2.4 22 215-236 1-22 (69)
358 PF12775 AAA_7: P-loop contain 93.9 0.052 1.1E-06 60.3 4.0 94 195-309 22-116 (272)
359 PRK05022 anaerobic nitric oxid 93.9 0.19 4E-06 62.1 9.2 136 185-333 186-332 (509)
360 COG1136 SalX ABC-type antimicr 93.9 0.49 1.1E-05 50.1 10.8 60 280-339 147-209 (226)
361 PF08433 KTI12: Chromatin asso 93.9 0.071 1.5E-06 58.9 4.9 23 214-236 2-24 (270)
362 COG1102 Cmk Cytidylate kinase 93.9 0.076 1.7E-06 51.5 4.4 44 215-271 2-45 (179)
363 PF13238 AAA_18: AAA domain; P 93.9 0.039 8.4E-07 54.0 2.6 21 216-236 1-21 (129)
364 KOG0729 26S proteasome regulat 93.8 0.23 5E-06 51.8 8.0 55 187-243 178-239 (435)
365 TIGR00554 panK_bact pantothena 93.8 0.29 6.2E-06 54.6 9.6 25 211-235 60-84 (290)
366 PRK05201 hslU ATP-dependent pr 93.8 0.12 2.7E-06 59.4 6.8 81 186-268 15-107 (443)
367 KOG1532 GTPase XAB1, interacts 93.8 0.23 5E-06 52.4 8.0 63 209-273 15-88 (366)
368 TIGR00235 udk uridine kinase. 93.8 0.052 1.1E-06 58.2 3.7 25 211-235 4-28 (207)
369 KOG0736 Peroxisome assembly fa 93.8 1 2.2E-05 54.9 14.4 99 186-305 672-776 (953)
370 cd02025 PanK Pantothenate kina 93.8 0.18 3.9E-06 54.2 7.8 21 215-235 1-21 (220)
371 PF00485 PRK: Phosphoribulokin 93.8 0.045 9.7E-07 58.0 3.1 21 215-235 1-21 (194)
372 PRK05480 uridine/cytidine kina 93.8 0.051 1.1E-06 58.4 3.6 26 211-236 4-29 (209)
373 COG2842 Uncharacterized ATPase 93.8 0.95 2.1E-05 49.3 12.9 97 213-318 94-190 (297)
374 PRK09270 nucleoside triphospha 93.8 0.24 5.3E-06 53.9 8.9 25 211-235 31-55 (229)
375 PF07726 AAA_3: ATPase family 93.7 0.032 7E-07 52.5 1.6 27 216-244 2-28 (131)
376 PRK12726 flagellar biosynthesi 93.7 0.27 5.9E-06 55.9 9.2 90 212-304 205-296 (407)
377 PF12061 DUF3542: Protein of u 93.7 0.23 5.1E-06 53.2 8.0 54 33-86 318-372 (402)
378 PTZ00088 adenylate kinase 1; P 93.7 0.078 1.7E-06 57.1 4.8 21 216-236 9-29 (229)
379 TIGR01425 SRP54_euk signal rec 93.6 0.4 8.7E-06 56.3 10.7 25 211-235 98-122 (429)
380 PRK00889 adenylylsulfate kinas 93.5 0.18 3.9E-06 52.4 7.1 24 213-236 4-27 (175)
381 cd03229 ABC_Class3 This class 93.5 0.2 4.4E-06 52.1 7.4 24 213-236 26-49 (178)
382 cd03217 ABC_FeS_Assembly ABC-t 93.5 0.3 6.5E-06 52.0 8.8 24 213-236 26-49 (200)
383 PRK06002 fliI flagellum-specif 93.5 0.19 4E-06 59.1 7.6 89 213-304 165-265 (450)
384 PRK09519 recA DNA recombinatio 93.4 0.18 3.9E-06 63.3 7.8 86 211-303 58-148 (790)
385 cd02027 APSK Adenosine 5'-phos 93.3 0.52 1.1E-05 47.3 9.7 21 215-235 1-21 (149)
386 PHA00729 NTP-binding motif con 93.3 0.095 2.1E-06 55.4 4.5 24 213-236 17-40 (226)
387 COG0396 sufC Cysteine desulfur 93.3 0.66 1.4E-05 48.3 10.2 60 286-345 155-216 (251)
388 cd03283 ABC_MutS-like MutS-lik 93.3 0.11 2.4E-06 54.9 5.1 22 214-235 26-47 (199)
389 PRK10820 DNA-binding transcrip 93.2 0.22 4.7E-06 61.4 8.2 62 187-254 205-266 (520)
390 COG0465 HflB ATP-dependent Zn 93.2 0.6 1.3E-05 56.7 11.4 183 183-391 147-356 (596)
391 PF03308 ArgK: ArgK protein; 93.2 0.14 3.1E-06 54.6 5.5 60 194-257 14-73 (266)
392 cd01135 V_A-ATPase_B V/A-type 93.1 0.29 6.3E-06 53.4 8.0 91 214-304 70-177 (276)
393 PF00910 RNA_helicase: RNA hel 93.1 0.05 1.1E-06 50.9 1.9 21 216-236 1-21 (107)
394 COG1428 Deoxynucleoside kinase 93.1 0.068 1.5E-06 54.8 2.9 25 213-237 4-28 (216)
395 PRK14723 flhF flagellar biosyn 93.1 0.5 1.1E-05 59.3 10.9 87 213-303 185-273 (767)
396 TIGR00150 HI0065_YjeE ATPase, 93.1 0.13 2.8E-06 49.6 4.6 40 193-236 6-45 (133)
397 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.26 5.7E-06 54.7 7.7 41 211-253 34-74 (259)
398 TIGR02858 spore_III_AA stage I 93.0 0.46 9.9E-06 52.6 9.4 130 194-338 97-234 (270)
399 KOG4252 GTP-binding protein [S 92.9 0.25 5.5E-06 48.1 6.2 36 215-251 22-57 (246)
400 cd02021 GntK Gluconate kinase 92.9 0.69 1.5E-05 46.5 10.1 22 215-236 1-22 (150)
401 PRK14721 flhF flagellar biosyn 92.9 0.42 9.1E-06 56.1 9.4 24 212-235 190-213 (420)
402 cd02028 UMPK_like Uridine mono 92.9 0.18 3.9E-06 52.3 5.9 22 215-236 1-22 (179)
403 cd03240 ABC_Rad50 The catalyti 92.9 0.43 9.4E-06 50.8 8.9 61 285-347 131-195 (204)
404 KOG0743 AAA+-type ATPase [Post 92.9 0.44 9.5E-06 54.8 9.1 70 324-400 338-413 (457)
405 PRK04040 adenylate kinase; Pro 92.9 0.078 1.7E-06 55.4 3.1 23 213-235 2-24 (188)
406 PF13504 LRR_7: Leucine rich r 92.9 0.064 1.4E-06 30.8 1.4 16 623-638 2-17 (17)
407 PRK08972 fliI flagellum-specif 92.9 0.33 7.1E-06 56.8 8.4 88 213-304 162-263 (444)
408 KOG0473 Leucine-rich repeat pr 92.8 0.0072 1.6E-07 61.5 -4.3 85 594-680 38-122 (326)
409 cd03243 ABC_MutS_homologs The 92.8 0.12 2.5E-06 55.2 4.4 22 214-235 30-51 (202)
410 PRK10463 hydrogenase nickel in 92.8 0.36 7.8E-06 53.3 8.1 26 211-236 102-127 (290)
411 PRK03839 putative kinase; Prov 92.8 0.076 1.6E-06 55.5 2.9 22 215-236 2-23 (180)
412 cd03282 ABC_MSH4_euk MutS4 hom 92.8 0.18 4E-06 53.4 5.8 120 213-341 29-159 (204)
413 cd02024 NRK1 Nicotinamide ribo 92.8 0.17 3.7E-06 52.4 5.4 22 215-236 1-22 (187)
414 TIGR01360 aden_kin_iso1 adenyl 92.8 0.088 1.9E-06 55.6 3.4 24 212-235 2-25 (188)
415 PRK04328 hypothetical protein; 92.8 0.34 7.4E-06 53.4 8.1 41 212-254 22-62 (249)
416 KOG0473 Leucine-rich repeat pr 92.7 0.0097 2.1E-07 60.6 -3.7 87 611-699 30-117 (326)
417 cd03244 ABCC_MRP_domain2 Domai 92.7 0.81 1.7E-05 49.7 10.9 23 213-235 30-52 (221)
418 cd03215 ABC_Carb_Monos_II This 92.7 0.4 8.7E-06 50.1 8.2 24 213-236 26-49 (182)
419 PRK05342 clpX ATP-dependent pr 92.6 0.2 4.4E-06 59.0 6.4 50 186-235 71-130 (412)
420 PF05659 RPW8: Arabidopsis bro 92.6 2 4.3E-05 42.4 12.2 82 5-86 3-85 (147)
421 COG1126 GlnQ ABC-type polar am 92.6 0.81 1.8E-05 47.2 9.6 125 213-340 28-203 (240)
422 cd00267 ABC_ATPase ABC (ATP-bi 92.6 0.4 8.6E-06 48.7 7.8 119 214-339 26-146 (157)
423 PRK05917 DNA polymerase III su 92.6 1.2 2.5E-05 49.5 11.7 142 194-350 5-154 (290)
424 PF10236 DAP3: Mitochondrial r 92.5 0.73 1.6E-05 52.4 10.5 49 344-393 258-306 (309)
425 PRK07276 DNA polymerase III su 92.5 3.9 8.5E-05 45.6 15.8 70 291-361 102-173 (290)
426 cd03232 ABC_PDR_domain2 The pl 92.5 0.64 1.4E-05 49.1 9.4 23 213-235 33-55 (192)
427 COG1120 FepC ABC-type cobalami 92.5 0.65 1.4E-05 50.3 9.4 58 283-341 146-207 (258)
428 COG0714 MoxR-like ATPases [Gen 92.4 0.26 5.6E-06 57.1 7.0 64 187-263 25-88 (329)
429 PRK06995 flhF flagellar biosyn 92.4 0.66 1.4E-05 55.5 10.3 25 212-236 255-279 (484)
430 PRK12597 F0F1 ATP synthase sub 92.4 0.27 5.9E-06 58.2 7.1 91 213-304 143-248 (461)
431 TIGR03522 GldA_ABC_ATP gliding 92.3 0.94 2E-05 51.7 11.3 24 213-236 28-51 (301)
432 PTZ00185 ATPase alpha subunit; 92.3 0.55 1.2E-05 55.4 9.0 92 213-304 189-300 (574)
433 COG1703 ArgK Putative periplas 92.2 0.18 3.9E-06 54.5 4.8 62 196-261 38-99 (323)
434 PRK08533 flagellar accessory p 92.2 0.56 1.2E-05 50.9 8.7 48 213-264 24-71 (230)
435 TIGR01069 mutS2 MutS2 family p 92.1 0.16 3.5E-06 65.1 5.1 175 213-403 322-508 (771)
436 COG2019 AdkA Archaeal adenylat 92.1 0.12 2.7E-06 50.3 3.1 23 213-235 4-26 (189)
437 smart00534 MUTSac ATPase domai 92.1 0.15 3.3E-06 53.4 4.1 120 215-340 1-129 (185)
438 PRK13765 ATP-dependent proteas 92.1 0.22 4.8E-06 61.8 6.1 75 186-270 31-105 (637)
439 TIGR03574 selen_PSTK L-seryl-t 92.1 0.42 9.2E-06 52.9 7.9 20 216-235 2-21 (249)
440 PRK09280 F0F1 ATP synthase sub 92.1 0.31 6.8E-06 57.5 7.0 90 213-303 144-248 (463)
441 PRK11823 DNA repair protein Ra 92.1 0.63 1.4E-05 56.0 9.8 84 212-303 79-166 (446)
442 PRK05973 replicative DNA helic 92.1 0.68 1.5E-05 49.9 9.0 48 212-263 63-110 (237)
443 PRK13543 cytochrome c biogenes 92.0 1.1 2.4E-05 48.3 10.8 24 213-236 37-60 (214)
444 TIGR00416 sms DNA repair prote 92.0 0.72 1.6E-05 55.5 10.1 54 195-254 80-133 (454)
445 PRK10416 signal recognition pa 92.0 0.7 1.5E-05 52.6 9.6 25 212-236 113-137 (318)
446 PRK10751 molybdopterin-guanine 92.0 0.15 3.3E-06 51.7 3.8 25 212-236 5-29 (173)
447 cd01134 V_A-ATPase_A V/A-type 92.0 0.84 1.8E-05 51.4 9.8 48 213-264 157-205 (369)
448 COG0467 RAD55 RecA-superfamily 92.0 0.17 3.6E-06 56.5 4.6 42 211-254 21-62 (260)
449 PRK11388 DNA-binding transcrip 91.9 0.39 8.5E-06 61.4 8.4 130 187-332 326-466 (638)
450 COG1419 FlhF Flagellar GTP-bin 91.9 0.45 9.8E-06 54.3 7.8 88 213-304 203-292 (407)
451 PF13481 AAA_25: AAA domain; P 91.9 0.29 6.2E-06 51.9 6.1 41 214-254 33-81 (193)
452 cd03369 ABCC_NFT1 Domain 2 of 91.9 1.3 2.8E-05 47.5 11.2 23 213-235 34-56 (207)
453 TIGR01359 UMP_CMP_kin_fam UMP- 91.9 0.097 2.1E-06 55.0 2.4 21 215-235 1-21 (183)
454 cd02023 UMPK Uridine monophosp 91.9 0.098 2.1E-06 55.7 2.4 21 215-235 1-21 (198)
455 TIGR03881 KaiC_arch_4 KaiC dom 91.8 0.52 1.1E-05 51.5 8.1 41 212-254 19-59 (229)
456 TIGR02322 phosphon_PhnN phosph 91.8 0.13 2.7E-06 53.8 3.2 23 214-236 2-24 (179)
457 PRK09544 znuC high-affinity zi 91.8 0.89 1.9E-05 50.3 9.9 24 213-236 30-53 (251)
458 TIGR03305 alt_F1F0_F1_bet alte 91.8 0.33 7.1E-06 57.2 6.7 91 213-304 138-243 (449)
459 PRK00131 aroK shikimate kinase 91.8 0.12 2.7E-06 53.7 3.1 24 213-236 4-27 (175)
460 COG1936 Predicted nucleotide k 91.7 0.13 2.8E-06 50.8 2.8 20 215-234 2-21 (180)
461 COG1066 Sms Predicted ATP-depe 91.7 0.41 8.9E-06 54.2 7.0 98 195-305 79-180 (456)
462 COG0003 ArsA Predicted ATPase 91.7 0.25 5.5E-06 55.7 5.5 48 213-262 2-49 (322)
463 PRK08149 ATP synthase SpaL; Va 91.7 0.46 1E-05 55.8 7.8 88 213-304 151-252 (428)
464 TIGR03575 selen_PSTK_euk L-ser 91.7 0.36 7.8E-06 55.0 6.7 21 216-236 2-22 (340)
465 PRK12678 transcription termina 91.6 0.39 8.5E-06 57.2 7.0 90 213-303 416-513 (672)
466 PF01078 Mg_chelatase: Magnesi 91.6 0.25 5.4E-06 51.3 4.9 42 186-235 3-44 (206)
467 PF13245 AAA_19: Part of AAA d 91.6 0.26 5.7E-06 42.4 4.3 21 214-234 11-31 (76)
468 PF13306 LRR_5: Leucine rich r 91.6 0.59 1.3E-05 45.5 7.5 100 1260-1368 7-110 (129)
469 PF03969 AFG1_ATPase: AFG1-lik 91.6 0.41 8.8E-06 55.4 7.1 101 212-334 61-168 (362)
470 KOG2170 ATPase of the AAA+ sup 91.5 0.48 1E-05 51.2 6.9 115 186-317 82-202 (344)
471 PRK15453 phosphoribulokinase; 91.5 0.87 1.9E-05 49.8 9.0 24 212-235 4-27 (290)
472 cd01136 ATPase_flagellum-secre 91.5 0.88 1.9E-05 51.5 9.5 88 213-304 69-170 (326)
473 PRK06793 fliI flagellum-specif 91.4 0.68 1.5E-05 54.5 8.8 90 213-305 156-258 (432)
474 KOG0739 AAA+-type ATPase [Post 91.4 2.8 6.1E-05 45.1 12.3 50 187-236 134-189 (439)
475 PRK08927 fliI flagellum-specif 91.4 0.65 1.4E-05 54.6 8.6 88 213-304 158-259 (442)
476 PF03205 MobB: Molybdopterin g 91.4 0.22 4.7E-06 49.1 4.1 39 214-253 1-39 (140)
477 TIGR03263 guanyl_kin guanylate 91.4 0.15 3.2E-06 53.4 3.1 22 214-235 2-23 (180)
478 COG3640 CooC CO dehydrogenase 91.4 0.27 5.9E-06 51.1 4.8 42 215-257 2-43 (255)
479 PF00625 Guanylate_kin: Guanyl 91.4 0.19 4.1E-06 52.7 3.8 36 213-250 2-37 (183)
480 cd03213 ABCG_EPDR ABCG transpo 91.3 1.2 2.5E-05 47.2 9.9 24 213-236 35-58 (194)
481 PRK06731 flhF flagellar biosyn 91.3 1.1 2.4E-05 49.5 9.8 90 213-305 75-166 (270)
482 TIGR00764 lon_rel lon-related 91.3 0.45 9.7E-06 59.5 7.6 75 186-270 18-92 (608)
483 PF06309 Torsin: Torsin; Inte 91.2 0.37 8E-06 45.4 5.1 49 188-236 27-76 (127)
484 cd00227 CPT Chloramphenicol (C 91.2 0.15 3.3E-06 52.9 3.0 23 214-236 3-25 (175)
485 COG4181 Predicted ABC-type tra 91.2 1.6 3.4E-05 43.1 9.4 85 256-341 122-215 (228)
486 cd03233 ABC_PDR_domain1 The pl 91.2 1.3 2.9E-05 47.1 10.3 24 213-236 33-56 (202)
487 COG4240 Predicted kinase [Gene 91.2 0.67 1.5E-05 47.6 7.2 83 211-294 48-134 (300)
488 cd03285 ABC_MSH2_euk MutS2 hom 91.1 0.26 5.6E-06 53.1 4.7 174 213-401 30-218 (222)
489 PRK09099 type III secretion sy 91.1 0.54 1.2E-05 55.5 7.6 89 213-304 163-264 (441)
490 PRK03846 adenylylsulfate kinas 91.1 0.19 4.2E-06 53.3 3.6 24 212-235 23-46 (198)
491 TIGR01313 therm_gnt_kin carboh 91.0 0.89 1.9E-05 46.5 8.5 21 216-236 1-21 (163)
492 PRK06217 hypothetical protein; 91.0 0.15 3.3E-06 53.4 2.7 22 215-236 3-24 (183)
493 PRK13949 shikimate kinase; Pro 90.9 0.16 3.4E-06 52.2 2.7 22 215-236 3-24 (169)
494 cd00544 CobU Adenosylcobinamid 90.9 1.1 2.5E-05 45.6 8.9 79 216-302 2-82 (169)
495 TIGR01818 ntrC nitrogen regula 90.9 1 2.3E-05 55.3 10.5 134 187-333 135-279 (463)
496 PF13306 LRR_5: Leucine rich r 90.9 0.54 1.2E-05 45.8 6.4 98 1259-1364 29-129 (129)
497 TIGR03498 FliI_clade3 flagella 90.9 0.69 1.5E-05 54.4 8.2 89 213-304 140-241 (418)
498 PRK05922 type III secretion sy 90.9 0.77 1.7E-05 54.0 8.5 87 214-304 158-258 (434)
499 cd02020 CMPK Cytidine monophos 90.8 0.16 3.4E-06 51.1 2.6 21 215-235 1-21 (147)
500 PRK10875 recD exonuclease V su 90.8 0.66 1.4E-05 57.7 8.4 118 214-334 168-303 (615)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-83 Score=793.32 Aligned_cols=642 Identities=30% Similarity=0.478 Sum_probs=508.2
Q ss_pred hHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhHhhcchhhhhHHHHHHHHHHHhhcCcccCCC
Q 000471 26 ELFTRHKKLEADFIKWKRMLKMIKAVLADAEDRQTKDESVKTWLDDLQNLAYDAEDVLDELETEALRRELLRQEPAAADQ 105 (1472)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~lD~~~~~~~~~~~~~~~~~~~~~ 105 (1472)
.++....++++.+..|++.|..++++++||++++.....++.|.+.+++++|++||.++.|......++..+.-
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l------ 91 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLL------ 91 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh------
Confidence 34555567888999999999999999999999998888999999999999999999999999887765433210
Q ss_pred CCCCcccccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccCccccccCCCc-ccccCCCCCcCCCc
Q 000471 106 PSSSANTSKFRKLIPTCCTNFSPRSIQFESKMASQIEEVTARLQSIISTQKDLLKLKNVISDGKS-RNIRQRLPTTSLVN 184 (1472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (1472)
.......+.. |+. .+.++.+..+..+..++..+ -+..+.++.......+.. ...+...++.+...
T Consensus 92 ----~~~~~~~~~~--c~~-------~~~~~~~~~~~~~~~rv~~~-l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 92 ----STRSVERQRL--CLC-------GFCSKNVSDSYKYGKRVSKV-LREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred ----hhhHHHHHHH--hhh-------hhHhHhhhhhHhHHHHHHHH-HHHHHHhccccceecccccccchhhcccCCCCc
Confidence 0000011111 111 23445555555566665555 222233332221111110 11112223444444
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc-hhccCcceEEEEecCCCCHHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDR-VQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
..+ ||.+..++++.+.|.+++ ..+++|+||||+||||||++++|+.. ++.+|+.++||.||+.++...++++
T Consensus 158 ~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 158 ESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred ccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 445 999999999999997753 38999999999999999999999987 9999999999999999999999999
Q ss_pred HHHhhcCCCCC-CcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHh-hCC
Q 000471 264 ILNSVASDQCK-DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER-MGA 341 (1472)
Q Consensus 264 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~-~~~ 341 (1472)
|++.++..... .....++++..+.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||++.|+.. +++
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 99999875432 2233478899999999999999999999998 6799999999999899999999999999998 888
Q ss_pred CCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCChhhHHHHHhhcccccC
Q 000471 342 DPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLR 421 (1472)
Q Consensus 342 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~~w~~~~~~~~~~~~ 421 (1472)
...++++.|+++|||+||.+.||.... ..++.++++|++|+++|+|+|||++++|+.|+.+....+|+++.+...+...
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 889999999999999999999987643 3445589999999999999999999999999999999999999987655422
Q ss_pred ------CCCcccchhhcccCCChhhHhHhhhhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHhCC
Q 000471 422 ------DSDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREFVRELHSRS 495 (1472)
Q Consensus 422 ------~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ 495 (1472)
.+.|.++|++||+.||++.|.||+|||+||+||.|+++.+|.+|+||||+.+...+.+++++|+.|+.+|++++
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~ 467 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRAS 467 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHH
Confidence 23788999999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred CccccC--CCCCcEEEehhHHHHHHHhhc-----ccEEEeecc--ccccccccccccccEEEEEcCCCCCCcchhhhccC
Q 000471 496 LFQQSS--KDASRFVMHDLINDLARWAAG-----ELYFRMEGT--LKGENQQKFSESLRHFSYICGEYDGDTRLEFICDV 566 (1472)
Q Consensus 496 ll~~~~--~~~~~~~mHdlv~~~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~ 566 (1472)
|++... .....|+|||+|||+|.++|+ ++...+... .........+..+||+++++..... ...-...
T Consensus 468 Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~ 544 (889)
T KOG4658|consen 468 LLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSEN 544 (889)
T ss_pred HHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCC
Confidence 999865 355789999999999999999 454444432 1112233345678999998765422 1223345
Q ss_pred CccceeeecccCcccccchhhHHHHHHhccCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhccc
Q 000471 567 QHLRTFLPVNLSDYRHNYLAWSVLQRLLNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYN 646 (1472)
Q Consensus 567 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~ 646 (1472)
+++++|+...... ........+|..++.||||||++|..+.++|++|++|.|||||+|+++.|..+|.++++|+.
T Consensus 545 ~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 545 PKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred CccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHh
Confidence 6799998876531 12344556799999999999999989999999999999999999999999999999999999
Q ss_pred ccEEecCCCcchhhhhhhhcccCCCceeecCCCCCcccCCCcccccccccccCceEecCC
Q 000471 647 LHTILLEDCHQLKKLCKDMGNLRKLHHLRNSTANSLKEMPKGFGKLTSLLTLGRFVVGKD 706 (1472)
Q Consensus 647 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 706 (1472)
|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.+...
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecc
Confidence 9999999988888888777789999999987654 2222233556666666665555433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-62 Score=652.41 Aligned_cols=693 Identities=21% Similarity=0.325 Sum_probs=442.4
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEe---cCC------
Q 000471 184 NEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCV---SED------ 254 (1472)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~------ 254 (1472)
+..++|||+++++++.++|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+.. ...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 4557999999999999988542 34689999999999999999999998 57788988887742 111
Q ss_pred -----CC-HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEE
Q 000471 255 -----FD-VFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV 328 (1472)
Q Consensus 255 -----~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv 328 (1472)
++ ...++++++.++........... ..+++.++++|+||||||||+. ..|+.+.....+.+.||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12344555555543322111111 4567788999999999999986 668888876666788999999
Q ss_pred EcCChHHHHhhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCChhh
Q 000471 329 TTRNLVVAERMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRD 408 (1472)
Q Consensus 329 TtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~~ 408 (1472)
|||+++++..++..++|+++.+++++||++|+++||+... +++++.+++++|+++|+|+|||++++|++|+++ +..+
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~ 406 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKED 406 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHH
Confidence 9999999988888889999999999999999999997643 345688999999999999999999999999987 6789
Q ss_pred HHHHHhhcccccCCCCcccchhhcccCCCh-hhHhHhhhhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHH
Q 000471 409 WEFVLKTDIWNLRDSDILPALRVSYHFLPP-QLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREF 487 (1472)
Q Consensus 409 w~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~ 487 (1472)
|+.++++.... .+..|.++|++||++|++ ..|.||+++|+||.++.++ .+..|+|.+... ++..
T Consensus 407 W~~~l~~L~~~-~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~~ 471 (1153)
T PLN03210 407 WMDMLPRLRNG-LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNIG 471 (1153)
T ss_pred HHHHHHHHHhC-ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chhC
Confidence 99999875443 345899999999999987 5999999999999887553 477788876543 2234
Q ss_pred HHHHHhCCCccccCCCCCcEEEehhHHHHHHHhhcccEE-------Eeecc-ccc-cccccccccccEEEEEcCCCCCCc
Q 000471 488 VRELHSRSLFQQSSKDASRFVMHDLINDLARWAAGELYF-------RMEGT-LKG-ENQQKFSESLRHFSYICGEYDGDT 558 (1472)
Q Consensus 488 ~~~L~~~~ll~~~~~~~~~~~mHdlv~~~a~~~~~~~~~-------~~~~~-~~~-~~~~~~~~~~r~ls~~~~~~~~~~ 558 (1472)
++.|++++|++... .++.|||++|++|+++++++.. ..... ... -....-...++++++......
T Consensus 472 l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~--- 545 (1153)
T PLN03210 472 LKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID--- 545 (1153)
T ss_pred hHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc---
Confidence 88999999998754 3699999999999999876531 00000 000 000000122333332211100
Q ss_pred chhhhccCCccceeeecccCcccccchhhHHHHHHhccCCcceEEEecCCC------CCccCCcccCCCC-cCcEEecCC
Q 000471 559 RLEFICDVQHLRTFLPVNLSDYRHNYLAWSVLQRLLNHLPRLRVFSLRGCG------NIFNLPNEIGNLK-HLRCLNLSR 631 (1472)
Q Consensus 559 ~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~------~~~~lp~~i~~L~-~Lr~L~L~~ 631 (1472)
...+....|..+++|+.|.+..+. ....+|..+..++ +||+|++.+
T Consensus 546 ---------------------------~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~ 598 (1153)
T PLN03210 546 ---------------------------ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK 598 (1153)
T ss_pred ---------------------------eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC
Confidence 011223446677777777775441 1124566666654 577888877
Q ss_pred ccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCceeecCCCCCcccCCCcccccccccccCceEecCCCCccc
Q 000471 632 TRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLRNSTANSLKEMPKGFGKLTSLLTLGRFVVGKDSGSGL 711 (1472)
Q Consensus 632 ~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~ 711 (1472)
+.++.+|..+ .+.+|+.|++++| .+..+|.++..+++|+.|+++++..+..+|. ++.+++|++|
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L------------- 662 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL------------- 662 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEE-------------
Confidence 7777777776 4677778888774 4677777777777888888777654555542 3333333333
Q ss_pred ccccCccccCCceEEecccCCCCccccchhccCCCCCCCeEEEEecCCcccCccchhHHHHHhccCCCCCCCCeEEEEee
Q 000471 712 RELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLEALLLKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGY 791 (1472)
Q Consensus 712 ~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 791 (1472)
+++++
T Consensus 663 ---------------------------------------------------------------------------~L~~c 667 (1153)
T PLN03210 663 ---------------------------------------------------------------------------KLSDC 667 (1153)
T ss_pred ---------------------------------------------------------------------------EecCC
Confidence 22111
Q ss_pred C-CCCCCcccCCCCcccccEEEEcCCCC-CCCCCCCCCCCccceeecCCCCceEeCccccCCCCCCCCCCccEEeccCcc
Q 000471 792 G-GTKFPIWLGDSSFSKLARLELRRCTS-TSLPSVGQLPFLKELRISGMDGVKSVGSEFYGNSRSVPFPSLETLSFFDMR 869 (1472)
Q Consensus 792 ~-~~~~p~~~~~~~l~~L~~L~L~~~~~-~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~fp~L~~L~l~~~~ 869 (1472)
. ...+|..+. .+++|+.|++++|.. ..+|....+++|+.|++++|..++.++.
T Consensus 668 ~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----------------------- 722 (1153)
T PLN03210 668 SSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD----------------------- 722 (1153)
T ss_pred CCccccchhhh--ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc-----------------------
Confidence 1 112333332 244555555555443 4444433455555555555443322110
Q ss_pred cccccccCCCCCcccccCCcccEeeecCCcCcccCCCCCCCCcceEEEcccCCchhccCCCCCccEEEEcCCCCeeecCC
Q 000471 870 EWEEWIPCGAGEEVDEVFPKLRKLSLFHCHKLQGTLPKRLLLLETLVIKSCQQLIVTIQCLPALSELQIDGCKRVVFSSP 949 (1472)
Q Consensus 870 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 949 (1472)
..++|+.|+++++. ++ .+|..+ .+++|.+|.+.++....+.
T Consensus 723 ----------------~~~nL~~L~L~~n~-i~-~lP~~~-------------------~l~~L~~L~l~~~~~~~l~-- 763 (1153)
T PLN03210 723 ----------------ISTNISWLDLDETA-IE-EFPSNL-------------------RLENLDELILCEMKSEKLW-- 763 (1153)
T ss_pred ----------------ccCCcCeeecCCCc-cc-cccccc-------------------cccccccccccccchhhcc--
Confidence 02345555555444 33 444210 1233333433332211000
Q ss_pred cccceeeeccccccccccCCCcccccccceEEeccCCCccccccccccccCCCCCCCccceEEeccCCCCCccchhhcCC
Q 000471 950 HLVHAVNVRKQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPESPCRLQFLKLSKCEGLTRLPQALLTL 1029 (1472)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~l~~~~~~l 1029 (1472)
..+..+..+ ....+++|+.|++++|.....+|..+.++
T Consensus 764 ----------------------~~~~~l~~~--------------------~~~~~~sL~~L~Ls~n~~l~~lP~si~~L 801 (1153)
T PLN03210 764 ----------------------ERVQPLTPL--------------------MTMLSPSLTRLFLSDIPSLVELPSSIQNL 801 (1153)
T ss_pred ----------------------ccccccchh--------------------hhhccccchheeCCCCCCccccChhhhCC
Confidence 000000000 00113466777777776666677777777
Q ss_pred CCccEEEeccCCCccccCCCCCCCCcceEEecCCCCCCCChhhhhccCCCCcceEEeecCCCCCcCCC-CCCCCCccEEE
Q 000471 1030 SSLTEMRISGCASLVSFPQAALPSHLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRNCNSLVSFPE-VALPSQLRTVK 1108 (1472)
Q Consensus 1030 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~ 1108 (1472)
++|+.|++++|..++.+|....+++|+.|++++|..+..+|.. .++|+.|++++| .+..+|. ...+++|+.|+
T Consensus 802 ~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 802 HKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred CCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCCCEEE
Confidence 7777777777777777666555667777777777766665543 345777777666 3444542 34456677777
Q ss_pred EecCCCcccCchhhhcCCCCccceEeecccCCcccc
Q 000471 1109 IEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKYI 1144 (1472)
Q Consensus 1109 l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 1144 (1472)
+++|+.+..+|... ..+++|+.+++++|+.++.+
T Consensus 876 L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 876 MNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCCcCccCccc--ccccCCCeeecCCCcccccc
Confidence 77777776666543 34667777777777766543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.9e-41 Score=383.44 Aligned_cols=277 Identities=37% Similarity=0.643 Sum_probs=224.6
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcC
Q 000471 191 REKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVAS 270 (1472)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1472)
||.++++|.++|.... ++.++|+|+||||+||||||++++++..++.+|+.++||.+++..+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998742 568999999999999999999999977789999999999999999999999999999988
Q ss_pred CCCC--CcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHhhCC-CCceeC
Q 000471 271 DQCK--DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMGA-DPVYQL 347 (1472)
Q Consensus 271 ~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~-~~~~~l 347 (1472)
.... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4567778999999999999999999999987 5888888888877789999999999998876654 578999
Q ss_pred CCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCChhhHHHHHhhcccccC-----C
Q 000471 348 KELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLR-----D 422 (1472)
Q Consensus 348 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~~w~~~~~~~~~~~~-----~ 422 (1472)
++|+++||++||.+.++... ...++.+++.+++|+++|+|+||||+++|++|+.+....+|+.+++...+... .
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997654 22334456789999999999999999999999766677899998876444332 2
Q ss_pred CCcccchhhcccCCChhhHhHhhhhccCCCCCccChHHHHHHHHHcCCcccc
Q 000471 423 SDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQE 474 (1472)
Q Consensus 423 ~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 474 (1472)
..+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+|+|+|...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 3788999999999999999999999999999999999999999999999653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-38 Score=420.09 Aligned_cols=180 Identities=15% Similarity=0.152 Sum_probs=125.4
Q ss_pred CCcchhhhccccccccCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeee
Q 000471 1241 TSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEI 1320 (1472)
Q Consensus 1241 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 1320 (1472)
++|+.|++++|...+.++..+..+++|+.|++++|...+.+|..+ ..++|+.|++++|...+.+|..+..+++|++|++
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 506 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence 344444555555555555666677888888888887777776544 3467888888888877777777778888888888
Q ss_pred cCCCCCccCCCC-CCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCCCCccccceeccCCCCcCcc
Q 000471 1321 RGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPPFPASLTNLWISDMPDLESI 1399 (1472)
Q Consensus 1321 ~~n~~l~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~L~~L~l~~~~~l~~i 1399 (1472)
++|...+.+|.. ..+++|++|++++|.+.+.+|. .+.++++|+.|+|++ |...+.+
T Consensus 507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~----------------------N~l~~~~ 563 (968)
T PLN00113 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQ----------------------NQLSGEI 563 (968)
T ss_pred cCCcceeeCChHHcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCC----------------------CcccccC
Confidence 888666666655 6677788888888888777776 566666666665554 4444566
Q ss_pred cccCCCCCcCceeeccCCCCCCCCCCCCCccccceecccCCcchH
Q 000471 1400 SSIGENLTSLETLRLFNCPKLKYFPEQGLPKSLSRLSIHNCPLIE 1444 (1472)
Q Consensus 1400 ~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~sL~~L~l~~c~~l~ 1444 (1472)
|..+..+++|++|++++|+..+.+|..+...++....+.+||.+|
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC 608 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcccc
Confidence 666667777888888887777777766555556666667777665
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-37 Score=412.16 Aligned_cols=510 Identities=18% Similarity=0.185 Sum_probs=305.9
Q ss_pred HHhccCCcceEEEecCCCCCc-cCCcccC-CCCcCcEEecCCcccc-ccchhhhhcccccEEecCCCcchhhhhhhhccc
Q 000471 592 RLLNHLPRLRVFSLRGCGNIF-NLPNEIG-NLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCHQLKKLCKDMGNL 668 (1472)
Q Consensus 592 ~~~~~l~~Lr~L~L~~~~~~~-~lp~~i~-~L~~Lr~L~L~~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 668 (1472)
..|..+++|++|+|++| .+. .+|..+. .+.+||+|+|++|++. .+|. +.+.+|++|+|++|.....+|..++++
T Consensus 87 ~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 87 SAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred hHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 34667888888888888 553 6776654 7888888888888876 4554 567888888888876666788888888
Q ss_pred CCCceeecCCCCCcccCCCcccccccccccCceEecCCCCcccccccCccccCCceEEecccCCCCccccchhccCCCCC
Q 000471 669 RKLHHLRNSTANSLKEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVN 748 (1472)
Q Consensus 669 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 748 (1472)
++|++|++++|.....+|..++++++|++|.....
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--------------------------------------------- 198 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN--------------------------------------------- 198 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCC---------------------------------------------
Confidence 88888888888755677777777777777631100
Q ss_pred CCeEEEEecCCcccCccchhHHHHHhccCCCCCCCCeEEEEeeCCC-CCCcccCCCCcccccEEEEcCCCC-CCCC-CCC
Q 000471 749 LEALLLKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGGT-KFPIWLGDSSFSKLARLELRRCTS-TSLP-SVG 825 (1472)
Q Consensus 749 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~-~~l~-~l~ 825 (1472)
.+....+..+..+++|+.|++++|... .+|.++. .+++|++|++++|.+ ..+| .++
T Consensus 199 -------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 199 -------------------QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred -------------------CCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceeccccChhHh
Confidence 000112223344555666666666554 4555554 266677777766666 3444 366
Q ss_pred CCCCccceeecCCCCceEeCccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEeeecCCcCcccCC
Q 000471 826 QLPFLKELRISGMDGVKSVGSEFYGNSRSVPFPSLETLSFFDMREWEEWIPCGAGEEVDEVFPKLRKLSLFHCHKLQGTL 905 (1472)
Q Consensus 826 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~l 905 (1472)
.+++|++|++++|.....++..+ ..+++|++|++++|. +.+.+
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l------------------------------------~~l~~L~~L~Ls~n~-l~~~~ 300 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSI------------------------------------FSLQKLISLDLSDNS-LSGEI 300 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhH------------------------------------hhccCcCEEECcCCe-eccCC
Confidence 66666666666653322222111 124566666666665 44455
Q ss_pred CCCCCCcceEEEcccCCchhccCCCCCccEEEEcCCCCeeecCCcccceeeeccccccccccCCCcccccccceEEeccC
Q 000471 906 PKRLLLLETLVIKSCQQLIVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVRKQAYFWRSETRLPQDIRSLNRLQISRC 985 (1472)
Q Consensus 906 p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 985 (1472)
|. .+..+++|+.|++++|.+... +|..
T Consensus 301 p~------------------~~~~l~~L~~L~l~~n~~~~~-----------------------~~~~------------ 327 (968)
T PLN00113 301 PE------------------LVIQLQNLEILHLFSNNFTGK-----------------------IPVA------------ 327 (968)
T ss_pred Ch------------------hHcCCCCCcEEECCCCccCCc-----------------------CChh------------
Confidence 53 334455666666666553210 0100
Q ss_pred CCccccccccccccCCCCCCCccceEEeccCCCCCccchhhcCCCCccEEEeccCCCccccCCC-CCCCCcceEEecCCC
Q 000471 986 PQLLSLVTEEEHDQQQPESPCRLQFLKLSKCEGLTRLPQALLTLSSLTEMRISGCASLVSFPQA-ALPSHLRTVKIEDCN 1064 (1472)
Q Consensus 986 ~~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~ 1064 (1472)
+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|.. ...++|+.|++++|+
T Consensus 328 ----------------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 328 ----------------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred ----------------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 112445566666666555556666666666666666666444334332 223556666666655
Q ss_pred CCCCChhhhhccCCCCcceEEeecCCCCCcCCC-CCCCCCccEEEEecCCCcccCchhhhcCCCCccceEeecccCCccc
Q 000471 1065 ALESLPEAWMHNSNSSLESLKIRNCNSLVSFPE-VALPSQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKY 1143 (1472)
Q Consensus 1065 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 1143 (1472)
....+|..+.. +++|+.|++++|.....+|. +..+++|+.|++++|.....++..+ ..+++|+.|++++|.....
T Consensus 392 l~~~~p~~~~~--~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 392 LEGEIPKSLGA--CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred ecccCCHHHhC--CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeee
Confidence 55555544332 56666666666644434332 3344556666666655333333322 2345566666655543322
Q ss_pred cccccCCCccceEEeccccccccccccccccccCCCCCccccccCCCCccccccccccccccccccccCCCCCCcccceE
Q 000471 1144 IARIQLPPSLKRLIVSRCWNLRTLIGEQDICSSSRGCTSLTYFSSENELPTMLEHLQVRFCSNLAFLSRNGNLPQALKYL 1223 (1472)
Q Consensus 1144 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 1223 (1472)
++..... ++|+.|
T Consensus 468 ~p~~~~~-------------------------------------------------------------------~~L~~L 480 (968)
T PLN00113 468 LPDSFGS-------------------------------------------------------------------KRLENL 480 (968)
T ss_pred cCccccc-------------------------------------------------------------------ccceEE
Confidence 2111111 234555
Q ss_pred Eeccccccccccchh-ccCCcchhhhccccccccCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEeccccccc
Q 000471 1224 RVEDCSKLESLAERL-DNTSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENL 1302 (1472)
Q Consensus 1224 ~l~~c~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l 1302 (1472)
++++|......|..+ .+++|+.|++++|...+.+|..+.++++|++|+|++|...+.+|..+..+++|++|++++|+..
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 555544433333332 2356677777777777777777778888888888888777777777777888888888888887
Q ss_pred ccccccCCCCCcccEeeecCCCCCccCCCCCCCCCcceeEecccc
Q 000471 1303 KALPNCMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLK 1347 (1472)
Q Consensus 1303 ~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l~~n~ 1347 (1472)
+.+|..+.++++|++|++++|+..+.+|..+.+.++....+.+|+
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 788888888888888888888777777766555566666666665
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.7e-28 Score=258.87 Aligned_cols=149 Identities=20% Similarity=0.247 Sum_probs=117.1
Q ss_pred cceEEeccccccccccchhc-cCCcchhhhccccccccCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEeccc
Q 000471 1220 LKYLRVEDCSKLESLAERLD-NTSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYD 1298 (1472)
Q Consensus 1220 L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~ 1298 (1472)
....+++++. +..+|.... ...+++.-+..++..+-+|..++.+++|..|++++| .+..+|.+++.+..|++|+++.
T Consensus 390 Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 390 VTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred eEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccc
Confidence 5567777743 445554332 355666556666777778888999999999999984 5788999999998999999999
Q ss_pred ccccccccccCCCCCcccEeeecCCCCCccCCCC--CCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCC
Q 000471 1299 CENLKALPNCMHNLTSLLILEIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPD 1374 (1472)
Q Consensus 1299 c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~ 1374 (1472)
| ....+|.++..+..|+.+-.++| .++.++.+ ..+.+|.+||+.+|.+..+.| .++++++|++|.|+||...
T Consensus 468 N-rFr~lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp--~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 468 N-RFRMLPECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP--ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred c-ccccchHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhhCCh--hhccccceeEEEecCCccC
Confidence 7 45677888888777877776666 67888776 778999999999999988777 5999999999999887554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.2e-28 Score=256.84 Aligned_cols=105 Identities=23% Similarity=0.320 Sum_probs=75.3
Q ss_pred CcchhhhccccccccCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeec
Q 000471 1242 SLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIR 1321 (1472)
Q Consensus 1242 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 1321 (1472)
.|..|++++ +.+..+|..+..+..|+.|+++.| ....+|...-.+..|+++-.++|..-..-|..+.++.+|..||+.
T Consensus 436 kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 436 KLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred cceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 333344432 445667788888888999999986 566677665555566666555554444444558899999999998
Q ss_pred CCCCCccCCCC-CCCCCcceeEeccccCC
Q 000471 1322 GCPSVVSFPED-GFPTNLQSLEVRGLKIS 1349 (1472)
Q Consensus 1322 ~n~~l~~~p~~-~~~~~L~~L~l~~n~~~ 1349 (1472)
+| .+..+|+. +.+++|++|+++||++.
T Consensus 514 nN-dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NN-DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CC-chhhCChhhccccceeEEEecCCccC
Confidence 88 46667766 89999999999999986
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-26 Score=252.96 Aligned_cols=375 Identities=17% Similarity=0.171 Sum_probs=223.8
Q ss_pred CccceEEeccCCCCCccchhhcCCCCccEEEeccCCCccccCCCCCC-CCcceEEecCCCCCCCChhhhhccCCCCcceE
Q 000471 1006 CRLQFLKLSKCEGLTRLPQALLTLSSLTEMRISGCASLVSFPQAALP-SHLRTVKIEDCNALESLPEAWMHNSNSSLESL 1084 (1472)
Q Consensus 1006 ~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 1084 (1472)
+.-+.|++++|.....-+..|.++++|+++++.+| .++.+|..+-. .+|+.|+|.+|. +.++...-... ++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~-l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSA-LPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHHHh-Hhhhhhh
Confidence 34577999998776666778889999999999887 78888877554 569999999865 44444333322 7889999
Q ss_pred EeecCCCCCcCCCCCCC--CCccEEEEecCCCcccCchhhhcCCCCccceEeecccCCcccc-ccccCCCccceEEeccc
Q 000471 1085 KIRNCNSLVSFPEVALP--SQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKYI-ARIQLPPSLKRLIVSRC 1161 (1472)
Q Consensus 1085 ~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~L~~L~l~~c 1161 (1472)
|++.| .+..++...++ .++++|++++|. ++.+....+ ..+.+|..|.++.|...+-. ..|..++.|+.|++..+
T Consensus 155 DLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 155 DLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 99988 66666654444 589999999998 666655544 34668888888887543321 22344455555554332
Q ss_pred cccccccccccccccCCCCCccccccCCCCccccccccccccccccccccCCCCCCcccceEEeccccccccccchhccC
Q 000471 1162 WNLRTLIGEQDICSSSRGCTSLTYFSSENELPTMLEHLQVRFCSNLAFLSRNGNLPQALKYLRVEDCSKLESLAERLDNT 1241 (1472)
Q Consensus 1162 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 1241 (1472)
.++. .+.+ .+. +++
T Consensus 232 -~iri-----------------------------ve~l-------------tFq-----------------------gL~ 245 (873)
T KOG4194|consen 232 -RIRI-----------------------------VEGL-------------TFQ-----------------------GLP 245 (873)
T ss_pred -ceee-----------------------------ehhh-------------hhc-----------------------Cch
Confidence 0000 0000 111 223
Q ss_pred CcchhhhccccccccCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeec
Q 000471 1242 SLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIR 1321 (1472)
Q Consensus 1242 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 1321 (1472)
+|+.|.+..|.+...--+.|..+.++++|+|+.|.....-...+.++++|+.|++|+|.+...-+.++...++|+.|+|+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 34444444444433333445555555555555543322222333445555555555544444444444555555555555
Q ss_pred CCCCCccCCCC--CCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCC----CC-CCCccccceeccCCC
Q 000471 1322 GCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS----PP-PFPASLTNLWISDMP 1394 (1472)
Q Consensus 1322 ~n~~l~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~----~~-~~~~~L~~L~l~~~~ 1394 (1472)
+| .++.+++. ..+.+|++|++++|.+...-. ..|..+.+|++|||++|.+.... .+ .-+++|+.|++.+|
T Consensus 326 ~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN- 402 (873)
T KOG4194|consen 326 SN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAE-GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN- 402 (873)
T ss_pred cc-ccccCChhHHHHHHHhhhhcccccchHHHHh-hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-
Confidence 55 34444443 334555555555555433222 24555555555555554322110 00 01455666666666
Q ss_pred CcCccccc-CCCCCcCceeeccCCCCCCCCCCCCCccccceecccCCcchHHhhccCCCCCCC
Q 000471 1395 DLESISSI-GENLTSLETLRLFNCPKLKYFPEQGLPKSLSRLSIHNCPLIEKRCRKDEGKYWP 1456 (1472)
Q Consensus 1395 ~l~~i~~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~sL~~L~l~~c~~l~~~~~~~~~~~w~ 1456 (1472)
++++||.- +..+++|++|+|.+|...+.-|...-+-.|++|-+..-..+|+ |+..|...|-
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD-Cql~Wl~qWl 464 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD-CQLKWLAQWL 464 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEe-ccHHHHHHHH
Confidence 68888874 4889999999999987665555543344899999999999999 9999988774
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=5.9e-26 Score=265.06 Aligned_cols=131 Identities=24% Similarity=0.311 Sum_probs=106.0
Q ss_pred ccCCcchhhhccccccccCccccCCCCCccEEeeccCCCccccCCC-CCCCCCccEEecccccccccccccCCCCCcccE
Q 000471 1239 DNTSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEE-GLPSTKLTELTIYDCENLKALPNCMHNLTSLLI 1317 (1472)
Q Consensus 1239 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~-~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 1317 (1472)
.+..|+.|.+.+|.........+.++.+|+.|+|++| .++++|.. +.+++.|++|+|||| .++.+|..+..+..|++
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHH
Confidence 3467888888888888888788999999999999995 57777764 567789999999995 56788899999999999
Q ss_pred eeecCCCCCccCCCCCCCCCcceeEeccccCCCCCCccccccccccceeeeccCCC
Q 000471 1318 LEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCP 1373 (1472)
Q Consensus 1318 L~L~~n~~l~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~ 1373 (1472)
|...+| .+..+|....+++|+.+|++.|++........ ..-++|++||++||..
T Consensus 435 L~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 999998 67888977889999999999999886443211 1227888888888754
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-22 Score=270.17 Aligned_cols=309 Identities=25% Similarity=0.438 Sum_probs=203.2
Q ss_pred CCCccceEEeccCC------CCCccchhhcCCC-CccEEEeccCCCccccCCCCCCCCcceEEecCCCCCCCChhhhhcc
Q 000471 1004 SPCRLQFLKLSKCE------GLTRLPQALLTLS-SLTEMRISGCASLVSFPQAALPSHLRTVKIEDCNALESLPEAWMHN 1076 (1472)
Q Consensus 1004 ~l~~L~~L~Ls~~~------~~~~l~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 1076 (1472)
.+++|+.|.+..+. ....+|..+..++ +|+.|++.++ .+..+|....+.+|+.|++.+|. +..++....
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~-- 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVH-- 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-ccccccccc--
Confidence 35566666664432 1123455555553 5788888776 45666766666788888888754 556665543
Q ss_pred CCCCcceEEeecCCCCCcCCCCCCCCCccEEEEecCCCcccCchhhhcCCCCccceEeecccCCccccccccCCCccceE
Q 000471 1077 SNSSLESLKIRNCNSLVSFPEVALPSQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKYIARIQLPPSLKRL 1156 (1472)
Q Consensus 1077 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L 1156 (1472)
.+++|+.|++++|..+..+|.+..+++|++|++++|..+..+|..+ ..+++|+.|++++|..++.++....+++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence 2778888888888777888877778888888888888887777665 45788888888888877776554455666666
Q ss_pred EeccccccccccccccccccCCCCCccccccCCCCccccccccccccccccccccCCCCCCcccceEEeccccccccccc
Q 000471 1157 IVSRCWNLRTLIGEQDICSSSRGCTSLTYFSSENELPTMLEHLQVRFCSNLAFLSRNGNLPQALKYLRVEDCSKLESLAE 1236 (1472)
Q Consensus 1157 ~l~~c~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 1236 (1472)
++++|..++.++ ..+.+|+.|+++++. ++.+|.
T Consensus 710 ~Lsgc~~L~~~p----------------------------------------------~~~~nL~~L~L~~n~-i~~lP~ 742 (1153)
T PLN03210 710 NLSGCSRLKSFP----------------------------------------------DISTNISWLDLDETA-IEEFPS 742 (1153)
T ss_pred eCCCCCCccccc----------------------------------------------cccCCcCeeecCCCc-cccccc
Confidence 666664433221 112345555555543 344444
Q ss_pred hhccCCcchhhhccccccc-------cCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccC
Q 000471 1237 RLDNTSLEEITISVLENLK-------SLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM 1309 (1472)
Q Consensus 1237 ~~~~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l 1309 (1472)
.+.+++|+.|++.++.... ..+..+...++|+.|++++|+.+..+|..+.++++|+.|++++|+.++.+|..+
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 4445555555555433211 011122335678888888888888888888888888888888888888887765
Q ss_pred CCCCcccEeeecCCCCCccCCCCCCCCCcceeEeccccCCCCCCccccccccccceeeecc
Q 000471 1310 HNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1370 (1472)
Q Consensus 1310 ~~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~ 1370 (1472)
.+++|++|++++|..+..+|. .+++|++|++++|.+.. +|. .+.++++|+.|+|++
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~-iP~-si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEE-VPW-WIEKFSNLSFLDMNG 878 (1153)
T ss_pred -CccccCEEECCCCCccccccc--cccccCEeECCCCCCcc-ChH-HHhcCCCCCEEECCC
Confidence 678888888888887777765 45678888888887754 444 466666666666544
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.8e-23 Score=228.48 Aligned_cols=343 Identities=16% Similarity=0.153 Sum_probs=256.2
Q ss_pred CCCCcceEEecCCCCCCCChhhhhccCCCCcceEEeecCCCCCcCCCCCCCC-CccEEEEecCCCcccCchhhhcCCCCc
Q 000471 1051 LPSHLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRNCNSLVSFPEVALPS-QLRTVKIEYCNALISLPEAWMQNSNTS 1129 (1472)
Q Consensus 1051 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~ 1129 (1472)
.++.-+.|++++| .+..+...++.+ +++|+++.+.+| .+..+|.++... +|+.|++.+|. +.++..... ..++.
T Consensus 76 lp~~t~~LdlsnN-kl~~id~~~f~n-l~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~a 150 (873)
T KOG4194|consen 76 LPSQTQTLDLSNN-KLSHIDFEFFYN-LPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPA 150 (873)
T ss_pred Cccceeeeecccc-ccccCcHHHHhc-CCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhh
Confidence 3566778888884 466665555555 899999999888 788899877665 49999999987 555544332 34788
Q ss_pred cceEeecccCCccc-cccccCCCccceEEeccccccccccccccccccCCCCCccccccCCCCccccccccccccccccc
Q 000471 1130 LESLRIKGCDSLKY-IARIQLPPSLKRLIVSRCWNLRTLIGEQDICSSSRGCTSLTYFSSENELPTMLEHLQVRFCSNLA 1208 (1472)
Q Consensus 1130 L~~L~l~~c~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 1208 (1472)
|+.||++.|..-+. .+.+..-.++++|++.++ ....
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-------------------------------------------~It~ 187 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-------------------------------------------RITT 187 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccc-------------------------------------------cccc
Confidence 99999988643322 122333356666666554 1111
Q ss_pred cccCCCCCCcccceEEeccccccccccchhc-cCCcchhhhccccccccCccccCCCCCccEEeeccCCCccccCCCCCC
Q 000471 1209 FLSRNGNLPQALKYLRVEDCSKLESLAERLD-NTSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLP 1287 (1472)
Q Consensus 1209 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~ 1287 (1472)
.-...+..+.+|..|.|+.|...+-.+..|. ++.|+.|++..|.+...-...|.++++|+.|.+..|....--...|..
T Consensus 188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 1111122234688888888554433345566 699999999998877665678999999999999998766655667888
Q ss_pred CCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCC--CCCCCcceeEeccccCCCCCCccccccccccce
Q 000471 1288 STKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRR 1365 (1472)
Q Consensus 1288 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 1365 (1472)
+.++++|+|+.|+....-..++.++++|+.|+++.| .+..+..+ .+.++|++|++++|.+....+. .|..+..|++
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~ 345 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEE 345 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChh-HHHHHHHhhh
Confidence 999999999999887777788999999999999999 46666544 8899999999999999775554 8999999999
Q ss_pred eeeccCCCCCCCCCC--CCccccceeccCCCCcCcc---cccCCCCCcCceeeccCCCCCCCCCCCCC--ccccceeccc
Q 000471 1366 FTICGGCPDLVSPPP--FPASLTNLWISDMPDLESI---SSIGENLTSLETLRLFNCPKLKYFPEQGL--PKSLSRLSIH 1438 (1472)
Q Consensus 1366 L~Ls~n~~~~~~~~~--~~~~L~~L~l~~~~~l~~i---~~~~~~l~~L~~L~l~~~~~l~~lp~~~~--~~sL~~L~l~ 1438 (1472)
|.|++|.+.-..-.. ...+|+.|||.+|...-.| ...+..+++|+.|++.+| .++.+|...+ +.+|++||+.
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCC
Confidence 999998776433333 4789999999999754333 334477999999999988 7899988744 6799999999
Q ss_pred CCcchH
Q 000471 1439 NCPLIE 1444 (1472)
Q Consensus 1439 ~c~~l~ 1444 (1472)
+|+...
T Consensus 425 ~NaiaS 430 (873)
T KOG4194|consen 425 DNAIAS 430 (873)
T ss_pred CCccee
Confidence 999753
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-24 Score=252.65 Aligned_cols=368 Identities=24% Similarity=0.286 Sum_probs=220.2
Q ss_pred hccCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCce
Q 000471 594 LNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHH 673 (1472)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 673 (1472)
..+.-+|++||+++| .+..+|..|+.+.+|+.|+++.|.|.++|.+++++.+|++|+|.+ +.+..+|.++..+++|+.
T Consensus 41 ~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQY 118 (1081)
T ss_pred hhheeeeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccc
Confidence 333445999999999 999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred eecCCCCCcccCCCcccccccccccCceEecCCCCcccccccCccccCCceEEecccCCCCccccchhccCCCCCCCeEE
Q 000471 674 LRNSTANSLKEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLEALL 753 (1472)
Q Consensus 674 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 753 (1472)
|+++.|. ...+|.-+..++.+.++.....- .+..++..
T Consensus 119 LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~-----~~~~lg~~------------------------------------ 156 (1081)
T KOG0618|consen 119 LDLSFNH-FGPIPLVIEVLTAEEELAASNNE-----KIQRLGQT------------------------------------ 156 (1081)
T ss_pred cccchhc-cCCCchhHHhhhHHHHHhhhcch-----hhhhhccc------------------------------------
Confidence 9999998 88889888888877665211000 00000000
Q ss_pred EEecCCcccCccchhHHHHHhccCCCCCCCCeEEEEeeCC-CCCCcccCCCCccccc-EEEEcCCCCCCCCCCCCCCCcc
Q 000471 754 LKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGG-TKFPIWLGDSSFSKLA-RLELRRCTSTSLPSVGQLPFLK 831 (1472)
Q Consensus 754 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~-~L~L~~~~~~~l~~l~~l~~L~ 831 (1472)
.++.+++..+.. ..++..+ .+++ .|+|++|.+. .-.+..+++|+
T Consensus 157 ----------------------------~ik~~~l~~n~l~~~~~~~i-----~~l~~~ldLr~N~~~-~~dls~~~~l~ 202 (1081)
T KOG0618|consen 157 ----------------------------SIKKLDLRLNVLGGSFLIDI-----YNLTHQLDLRYNEME-VLDLSNLANLE 202 (1081)
T ss_pred ----------------------------cchhhhhhhhhcccchhcch-----hhhheeeecccchhh-hhhhhhccchh
Confidence 011111211111 1122111 1222 3566665554 22344555555
Q ss_pred ceeecCCCCceEeCccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEeeecCCcCcccCCC-CCCC
Q 000471 832 ELRISGMDGVKSVGSEFYGNSRSVPFPSLETLSFFDMREWEEWIPCGAGEEVDEVFPKLRKLSLFHCHKLQGTLP-KRLL 910 (1472)
Q Consensus 832 ~L~L~~~~~l~~i~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp-~~l~ 910 (1472)
.|....+.. ..+ .+ .-++|+.|+..+|+..+ ..+ ....
T Consensus 203 ~l~c~rn~l-s~l-------------------~~--------------------~g~~l~~L~a~~n~l~~-~~~~p~p~ 241 (1081)
T KOG0618|consen 203 VLHCERNQL-SEL-------------------EI--------------------SGPSLTALYADHNPLTT-LDVHPVPL 241 (1081)
T ss_pred hhhhhhccc-ceE-------------------Ee--------------------cCcchheeeeccCccee-eccccccc
Confidence 555544221 111 10 02344444444444211 222 1122
Q ss_pred CcceEEEccc--CCchhccCCCCCccEEEEcCCCCeeecCCcccceeeeccccccccccCCCcccccccceEEeccCCCc
Q 000471 911 LLETLVIKSC--QQLIVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVRKQAYFWRSETRLPQDIRSLNRLQISRCPQL 988 (1472)
Q Consensus 911 ~L~~L~i~~~--~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 988 (1472)
+|+.++++.. ..++.++..+.+|+.+.+.+|.+..+ |..+..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~l------------------------p~ri~~------------ 285 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVAL------------------------PLRISR------------ 285 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhh------------------------HHHHhh------------
Confidence 3444444332 13334677778888888877764321 111100
Q ss_pred cccccccccccCCCCCCCccceEEeccCCCCCccchhhcCCCCccEEEeccCCCccccCCCCC---CCCcceEEecCCCC
Q 000471 989 LSLVTEEEHDQQQPESPCRLQFLKLSKCEGLTRLPQALLTLSSLTEMRISGCASLVSFPQAAL---PSHLRTVKIEDCNA 1065 (1472)
Q Consensus 989 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~~~~ 1065 (1472)
..+|++|.+..|. +..+|+....+++|++|++..| .+.++|...+ ..+|+.|..+.+ .
T Consensus 286 ----------------~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~ 346 (1081)
T KOG0618|consen 286 ----------------ITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-K 346 (1081)
T ss_pred ----------------hhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-c
Confidence 2345566666553 4566666667777778877776 5555555322 123555555543 3
Q ss_pred CCCChhhhhccCCCCcceEEeecCCCCC-cCCCCCCCCCccEEEEecCCCcccCchhhhcCCCCccceEeeccc
Q 000471 1066 LESLPEAWMHNSNSSLESLKIRNCNSLV-SFPEVALPSQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGC 1138 (1472)
Q Consensus 1066 l~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 1138 (1472)
+...| .+.+..++.|+.|.+.+|..-. ++|.+..+.+|+.|++++|. +..+|.... .++..|++|+++||
T Consensus 347 l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~-~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 347 LSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKL-RKLEELEELNLSGN 417 (1081)
T ss_pred ccccc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHH-hchHHhHHHhcccc
Confidence 44444 2233346778888888884432 36777777888888888887 677777654 34555666666654
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.3e-23 Score=230.87 Aligned_cols=335 Identities=21% Similarity=0.290 Sum_probs=190.7
Q ss_pred CCccceEEeccCCCCCccchhhcCCCCccEEEeccCCCccccCCCCCCCCcceEEecCCCCC-CCChhhhhccCCCCcce
Q 000471 1005 PCRLQFLKLSKCEGLTRLPQALLTLSSLTEMRISGCASLVSFPQAALPSHLRTVKIEDCNAL-ESLPEAWMHNSNSSLES 1083 (1472)
Q Consensus 1005 l~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~ 1083 (1472)
|..++.|.|... .+..+|..++.+.+|++|.+++|...+-.....-++.|+.+.+.+|+.- ..+|..++. +..|..
T Consensus 31 Mt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~--l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR--LKDLTI 107 (1255)
T ss_pred hhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc--ccccee
Confidence 445666666654 4567888888889999999998866655555566788888888886533 346777766 778889
Q ss_pred EEeecCCCCCcCC-CCCCCCCccEEEEecCCCcccCchhhhcCCCCccceEeecccCCccccccccCCCccceEEecccc
Q 000471 1084 LKIRNCNSLVSFP-EVALPSQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKYIARIQLPPSLKRLIVSRCW 1162 (1472)
Q Consensus 1084 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 1162 (1472)
|++++| .+...| ......++-.|++++|+ +.++|...+. +++-|-.|++++|..-.-.+....+.
T Consensus 108 lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~----------- 173 (1255)
T KOG0444|consen 108 LDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLS----------- 173 (1255)
T ss_pred eecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHh-----------
Confidence 999988 566666 35566788888898887 7888876653 46666677777653211111111111
Q ss_pred ccccccccccccccCCCCCccccccCCCCccccccccccccccccccccCCCCCCcccceEEeccccc----cccccchh
Q 000471 1163 NLRTLIGEQDICSSSRGCTSLTYFSSENELPTMLEHLQVRFCSNLAFLSRNGNLPQALKYLRVEDCSK----LESLAERL 1238 (1472)
Q Consensus 1163 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~----l~~l~~~~ 1238 (1472)
.|+.|.|++++. +..+|
T Consensus 174 --------------------------------------------------------~LqtL~Ls~NPL~hfQLrQLP--- 194 (1255)
T KOG0444|consen 174 --------------------------------------------------------MLQTLKLSNNPLNHFQLRQLP--- 194 (1255)
T ss_pred --------------------------------------------------------hhhhhhcCCChhhHHHHhcCc---
Confidence 233333333321 11111
Q ss_pred ccCCcchhhhccccc-cccCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccE
Q 000471 1239 DNTSLEEITISVLEN-LKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLI 1317 (1472)
Q Consensus 1239 ~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 1317 (1472)
.+++|+.|++++.+- +..+|..+..+.+|..+++|.| .+..+|.....+.+|+.|+||+|.+ +.+........+|++
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLET 272 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhh
Confidence 234555556555432 2245555555666666666553 3444555555555555555555433 223233344445555
Q ss_pred eeecCCCCCccCCCC-CCCCCcceeEeccccCC-CCCCccccccccccceeeeccCCCCCCCCCCCCccccceeccCCCC
Q 000471 1318 LEIRGCPSVVSFPED-GFPTNLQSLEVRGLKIS-KPLPEWGFNRFTSLRRFTICGGCPDLVSPPPFPASLTNLWISDMPD 1395 (1472)
Q Consensus 1318 L~L~~n~~l~~~p~~-~~~~~L~~L~l~~n~~~-~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~L~~L~l~~~~~ 1395 (1472)
|+++.| .++.+|.. ..++.|+.|++.+|++. +.+|. +++.+.+|+.+..++| +
T Consensus 273 LNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN-----------------------~ 327 (1255)
T KOG0444|consen 273 LNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANN-----------------------K 327 (1255)
T ss_pred hccccc-hhccchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhcc-----------------------c
Confidence 555555 34555544 44555555555555554 23333 4555555555555443 4
Q ss_pred cCcccccCCCCCcCceeeccCCCCCCCCCCC-CCccccceecccCCcch
Q 000471 1396 LESISSIGENLTSLETLRLFNCPKLKYFPEQ-GLPKSLSRLSIHNCPLI 1443 (1472)
Q Consensus 1396 l~~i~~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~~sL~~L~l~~c~~l 1443 (1472)
++-+|.++..|..|+.|.|+.| .+-.+|+. .+++-|+.||+..||.|
T Consensus 328 LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCc
Confidence 5555555555555666655533 44445544 45555566666655554
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.8e-23 Score=230.29 Aligned_cols=368 Identities=21% Similarity=0.310 Sum_probs=254.4
Q ss_pred cCCcceEEEecCCCCC--ccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCce
Q 000471 596 HLPRLRVFSLRGCGNI--FNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHH 673 (1472)
Q Consensus 596 ~l~~Lr~L~L~~~~~~--~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 673 (1472)
-++..|-.|+++| .+ ..+|.+...+..+++|.|..+.+..+|+.++.|.+|++|.+.+ +.+..+-..++.|+.||.
T Consensus 5 VLpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCC-cCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHH
Confidence 4566788999999 54 4689999999999999999999999999999999999999999 567778888999999999
Q ss_pred eecCCCCC-cccCCCcccccccccccCceEecCCCCcccccccCccccCCceEEecccCCCCccccchhccCCCCCCCeE
Q 000471 674 LRNSTANS-LKEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLEAL 752 (1472)
Q Consensus 674 L~l~~~~~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 752 (1472)
+.+..|+. -..+|..|-+|..|.+|+.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDL---------------------------------------------------- 110 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDL---------------------------------------------------- 110 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeec----------------------------------------------------
Confidence 99998872 2367888777776666521
Q ss_pred EEEecCCcccCccchhHHHHHhccCCCCCCCCeEEEEeeCCCCCCcccCCCCcccccEEEEcCCCCCCCCC-CCCCCCcc
Q 000471 753 LLKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTSTSLPS-VGQLPFLK 831 (1472)
Q Consensus 753 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~ 831 (1472)
+.|+. ..++..+..-+++-.|++++|++..+|..++- .+..|-.|+|++|.++.+|+ ...+..|+
T Consensus 111 ------------ShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 111 ------------SHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred ------------chhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 11111 13455566667888999999999999987653 57888899999999988876 88999999
Q ss_pred ceeecCCCCceEeCccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEeeecCCcCcccCCCCCCCC
Q 000471 832 ELRISGMDGVKSVGSEFYGNSRSVPFPSLETLSFFDMREWEEWIPCGAGEEVDEVFPKLRKLSLFHCHKLQGTLPKRLLL 911 (1472)
Q Consensus 832 ~L~L~~~~~l~~i~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~ 911 (1472)
+|+|++|+....--. ...++.+|+.|++++...--.-++.. ...+.+|..++++.++ |. .+|.
T Consensus 177 tL~Ls~NPL~hfQLr------QLPsmtsL~vLhms~TqRTl~N~Pts-----ld~l~NL~dvDlS~N~-Lp-~vPe---- 239 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLR------QLPSMTSLSVLHMSNTQRTLDNIPTS-----LDDLHNLRDVDLSENN-LP-IVPE---- 239 (1255)
T ss_pred hhhcCCChhhHHHHh------cCccchhhhhhhcccccchhhcCCCc-----hhhhhhhhhccccccC-CC-cchH----
Confidence 999999764321100 00113444444444432211111111 2235667777776554 54 5553
Q ss_pred cceEEEcccCCchhccCCCCCccEEEEcCCCCeeecCCcccceeeeccccccccccCCCcccccccceEEeccCCCcccc
Q 000471 912 LETLVIKSCQQLIVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVRKQAYFWRSETRLPQDIRSLNRLQISRCPQLLSL 991 (1472)
Q Consensus 912 L~~L~i~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 991 (1472)
.+..+++|+.|++++|.+..+...
T Consensus 240 --------------cly~l~~LrrLNLS~N~iteL~~~------------------------------------------ 263 (1255)
T KOG0444|consen 240 --------------CLYKLRNLRRLNLSGNKITELNMT------------------------------------------ 263 (1255)
T ss_pred --------------HHhhhhhhheeccCcCceeeeecc------------------------------------------
Confidence 566778888888888875442111
Q ss_pred ccccccccCCCCCCCccceEEeccCCCCCccchhhcCCCCccEEEeccCCC-ccccCCC-CCCCCcceEEecCCCCCCCC
Q 000471 992 VTEEEHDQQQPESPCRLQFLKLSKCEGLTRLPQALLTLSSLTEMRISGCAS-LVSFPQA-ALPSHLRTVKIEDCNALESL 1069 (1472)
Q Consensus 992 ~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~l~~c~~-l~~~~~~-~~~~~L~~L~l~~~~~l~~~ 1069 (1472)
.....+|++|++|.|+ ++.+|+.+..++.|+.|.+.+|.. ...+|.. +.+.+|+.+..++ ++++-+
T Consensus 264 ----------~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElV 331 (1255)
T KOG0444|consen 264 ----------EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV 331 (1255)
T ss_pred ----------HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccC
Confidence 0002367888888875 467888888888888888877743 2334443 4456777777666 557777
Q ss_pred hhhhhccCCCCcceEEeecCCCCCcCC-CCCCCCCccEEEEecCCCcccCc
Q 000471 1070 PEAWMHNSNSSLESLKIRNCNSLVSFP-EVALPSQLRTVKIEYCNALISLP 1119 (1472)
Q Consensus 1070 ~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~ 1119 (1472)
|+++.. +..|+.|.++.| .+..+| ...+++.|+.|++..|+.+.--|
T Consensus 332 PEglcR--C~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 332 PEGLCR--CVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhh--hHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 877654 777888888766 444445 35566778888888887665443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.4e-14 Score=178.15 Aligned_cols=98 Identities=24% Similarity=0.312 Sum_probs=55.2
Q ss_pred cccEeeecCCCCCccCCCCCCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCCCCccccceeccCC
Q 000471 1314 SLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPPFPASLTNLWISDM 1393 (1472)
Q Consensus 1314 ~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~L~~L~l~~~ 1393 (1472)
+|+.|++++| .+..+|. .+.+|+.|++++|.+.+ +|. . .++|+.|++++|.+. ++|..+.+|+.|++++|
T Consensus 363 ~L~~L~Ls~N-~L~~LP~--l~~~L~~LdLs~N~Lt~-LP~-l---~s~L~~LdLS~N~Ls--sIP~l~~~L~~L~Ls~N 432 (788)
T PRK15387 363 ELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLTS-LPV-L---PSELKELMVSGNRLT--SLPMLPSGLLSLSVYRN 432 (788)
T ss_pred ccceehhhcc-ccccCcc--cccccceEEecCCcccC-CCC-c---ccCCCEEEccCCcCC--CCCcchhhhhhhhhccC
Confidence 3444444444 2333443 23445555555555543 221 1 234555666554432 34445556777777776
Q ss_pred CCcCcccccCCCCCcCceeeccCCCCCCC
Q 000471 1394 PDLESISSIGENLTSLETLRLFNCPKLKY 1422 (1472)
Q Consensus 1394 ~~l~~i~~~~~~l~~L~~L~l~~~~~l~~ 1422 (1472)
.++.+|..+.++++|+.|+|++|+.-+.
T Consensus 433 -qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 433 -QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred -cccccChHHhhccCCCeEECCCCCCCch
Confidence 4667887777788888888888865444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=4.9e-14 Score=173.41 Aligned_cols=157 Identities=24% Similarity=0.361 Sum_probs=118.9
Q ss_pred CCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCCCCCCCcceeEe
Q 000471 1264 LHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEV 1343 (1472)
Q Consensus 1264 l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l 1343 (1472)
.++|++|++++|. +..+|.. ..+|+.|++++|.. +.+|.. ..+|++|+|++| .++.+|. .+++|+.|++
T Consensus 301 p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~L 369 (788)
T PRK15387 301 PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSDN-QLASLPT--LPSELYKLWA 369 (788)
T ss_pred ccccceeECCCCc-cccCCCC---cccccccccccCcc-cccccc---ccccceEecCCC-ccCCCCC--CCcccceehh
Confidence 3678888888864 4455542 23688888888665 445531 248999999998 5667876 5678999999
Q ss_pred ccccCCCCCCccccccccccceeeeccCCCCCCCCCCCCccccceeccCCCCcCcccccCCCCCcCceeeccCCCCCCCC
Q 000471 1344 RGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLETLRLFNCPKLKYF 1423 (1472)
Q Consensus 1344 ~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~~~~l~~l 1423 (1472)
++|.+.. +|. . .++|+.|++++|.+. .++..+.+|+.|++++| .+..+|.. ..+|+.|++++| .++.+
T Consensus 370 s~N~L~~-LP~-l---~~~L~~LdLs~N~Lt--~LP~l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~L 437 (788)
T PRK15387 370 YNNRLTS-LPA-L---PSGLKELIVSGNRLT--SLPVLPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRL 437 (788)
T ss_pred hcccccc-Ccc-c---ccccceEEecCCccc--CCCCcccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-ccccc
Confidence 9999875 443 2 357999999997654 56667889999999999 57778853 457899999987 57788
Q ss_pred CCC-CCccccceecccCCcch
Q 000471 1424 PEQ-GLPKSLSRLSIHNCPLI 1443 (1472)
Q Consensus 1424 p~~-~~~~sL~~L~l~~c~~l 1443 (1472)
|.. ..+++|+.|++++||+-
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ChHHhhccCCCeEECCCCCCC
Confidence 876 45789999999999874
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=9.7e-13 Score=163.61 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=46.9
Q ss_pred CCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCCCCCCCcceeEec
Q 000471 1265 HHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVR 1344 (1472)
Q Consensus 1265 ~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l~ 1344 (1472)
++|+.|++++|. ++.+|..+. ++|+.|++++|+. ..+|..+. ++|++|++++|. ++.+|.. .+.+|+.|+++
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~-l~~sL~~LdLs 396 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLPASLP--PELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNA-LTNLPEN-LPAALQIMQAS 396 (754)
T ss_pred ccceeccccCCc-cccCChhhc--CcccEEECCCCCC-CcCChhhc--CCcCEEECCCCc-CCCCCHh-HHHHHHHHhhc
Confidence 455556665553 333444332 3566666666543 23444332 456666666653 3444442 23356666666
Q ss_pred cccCCCCCCcc---ccccccccceeeeccCC
Q 000471 1345 GLKISKPLPEW---GFNRFTSLRRFTICGGC 1372 (1472)
Q Consensus 1345 ~n~~~~~~~~~---~l~~l~~L~~L~Ls~n~ 1372 (1472)
+|.+.. +|.. .+..++++..|+|.+|.
T Consensus 397 ~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 397 RNNLVR-LPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCCccc-CchhHHHHhhcCCCccEEEeeCCC
Confidence 665542 2220 12223445555555543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=1.4e-12 Score=162.28 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=66.4
Q ss_pred CcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCceeecC
Q 000471 598 PRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLRNS 677 (1472)
Q Consensus 598 ~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 677 (1472)
.+..+|+++++ .++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 45789999998 8999998775 589999999999999998775 58999999985 5778887654 478899998
Q ss_pred CCCCcccCCCc
Q 000471 678 TANSLKEMPKG 688 (1472)
Q Consensus 678 ~~~~~~~~p~~ 688 (1472)
+|. +..+|..
T Consensus 250 ~N~-L~~LP~~ 259 (754)
T PRK15370 250 INR-ITELPER 259 (754)
T ss_pred CCc-cCcCChh
Confidence 887 5566643
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=2.9e-11 Score=162.57 Aligned_cols=294 Identities=16% Similarity=0.186 Sum_probs=182.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEec-CCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVS-EDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i 264 (1472)
..+|-|..-.+.+.+ . ...+++.|+|++|.||||++.++... ++.++|+++. .+.++..+...+
T Consensus 14 ~~~~~R~rl~~~l~~----~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKLSG----A-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHHhc----c-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 346677655554432 1 24689999999999999999998752 2368999996 445667777777
Q ss_pred HHhhcCCCCC------------CcccHHHHHHHHHhhhC--CCeEEEEEeCCCCCCHhhHHhhccc-ccCCCCCcEEEEE
Q 000471 265 LNSVASDQCK------------DKDDLNLLQEKLKKQLS--GNKFLLVLDDVWNENYIRWSELRCP-FVAGAAGSKIVVT 329 (1472)
Q Consensus 265 ~~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~~s~iivT 329 (1472)
+..+...... ...+...+...+...+. +.+++|||||+...+......+... +.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777422110 00122223333333332 6789999999977643333323222 2233456788899
Q ss_pred cCChH---HHHhhCCCCceeCC----CCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcC
Q 000471 330 TRNLV---VAERMGADPVYQLK----ELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRG 402 (1472)
Q Consensus 330 tR~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~ 402 (1472)
||... .....-.....++. +|+.+|+.++|........ -.+.+.+|.+.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99742 11111122344555 9999999999987642211 1466789999999999999999987755
Q ss_pred CCChhhHHHHHhhcccccCCCCcccchhh-cccCCChhhHhHhhhhccCCCCCccChHHHHHHHHHcCCcccccCCccHH
Q 000471 403 RDDPRDWEFVLKTDIWNLRDSDILPALRV-SYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKME 481 (1472)
Q Consensus 403 ~~~~~~w~~~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 481 (1472)
...... ..... ........+...+.- .|+.||++.+..+...|+++ .|+.+ +.. .+...
T Consensus 232 ~~~~~~--~~~~~-~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~~~-------- 291 (903)
T PRK04841 232 NNSSLH--DSARR-LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVTGE-------- 291 (903)
T ss_pred CCCchh--hhhHh-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHcCC--------
Confidence 432100 00100 000111234444333 37899999999999999996 33432 222 11111
Q ss_pred HHHHHHHHHHHhCCCccc-cCCCCCcEEEehhHHHHHHHhh
Q 000471 482 DLGREFVRELHSRSLFQQ-SSKDASRFVMHDLINDLARWAA 521 (1472)
Q Consensus 482 ~~~~~~~~~L~~~~ll~~-~~~~~~~~~mHdlv~~~a~~~~ 521 (1472)
+.+...+++|.+++++.. .+.+..+|+.|++++++.+...
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 224678999999999754 3444457999999999998765
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=2.6e-14 Score=134.21 Aligned_cols=100 Identities=29% Similarity=0.408 Sum_probs=60.1
Q ss_pred CCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCceeec
Q 000471 597 LPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLRN 676 (1472)
Q Consensus 597 l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 676 (1472)
+.++..|.|++| .+..+|..|..|.+|++|++++|+|+++|.+|+.|++|++|++.- +.+..+|.+|+.++.|+.||+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 344555666666 666666666666666666666666666666666666666666665 456666666666666666666
Q ss_pred CCCCCc-ccCCCccccccccccc
Q 000471 677 STANSL-KEMPKGFGKLTSLLTL 698 (1472)
Q Consensus 677 ~~~~~~-~~~p~~i~~L~~L~~L 698 (1472)
..|+.- ..+|..|-.|+.|+.|
T Consensus 110 tynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred cccccccccCCcchhHHHHHHHH
Confidence 655522 2345445444444443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=1.1e-13 Score=147.91 Aligned_cols=113 Identities=18% Similarity=0.241 Sum_probs=78.5
Q ss_pred CCCCCeEEEEeeCCCCCCcccCCCCcccccEEEEcCCCCCCCC--CCCCCCCccceeecCCCCceEeCccccCCCCCCCC
Q 000471 780 HRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTSTSLP--SVGQLPFLKELRISGMDGVKSVGSEFYGNSRSVPF 857 (1472)
Q Consensus 780 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 857 (1472)
++....+++..|.+..+|+..+. .+++|++|+|++|.+..+. .|..+++|..|.+.+++.+++++...++. +
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-----L 139 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-----L 139 (498)
T ss_pred CCcceEEEeccCCcccCChhhcc-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-----H
Confidence 34678899999999999987664 6899999999999995444 38899999999999989999988766553 4
Q ss_pred CCccEEeccCcccccccccCCCCCcccccCCcccEeeecCCcCcccCCC
Q 000471 858 PSLETLSFFDMREWEEWIPCGAGEEVDEVFPKLRKLSLFHCHKLQGTLP 906 (1472)
Q Consensus 858 p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp 906 (1472)
.+|+.|.+.-+. +..+ -+.....+++|..|.+.++. +. .++
T Consensus 140 ~slqrLllNan~-i~Ci-----r~~al~dL~~l~lLslyDn~-~q-~i~ 180 (498)
T KOG4237|consen 140 SSLQRLLLNANH-INCI-----RQDALRDLPSLSLLSLYDNK-IQ-SIC 180 (498)
T ss_pred HHHHHHhcChhh-hcch-----hHHHHHHhhhcchhcccchh-hh-hhc
Confidence 555554443221 1111 01122346778888887775 54 555
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=8.7e-14 Score=148.60 Aligned_cols=252 Identities=20% Similarity=0.262 Sum_probs=167.1
Q ss_pred ccccccccccCCCCCCcccceEEeccccccccccc-hhc-cCCcchhhhccccccccCccccCCCCCccEEeeccCCCcc
Q 000471 1202 RFCSNLAFLSRNGNLPQALKYLRVEDCSKLESLAE-RLD-NTSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLE 1279 (1472)
Q Consensus 1202 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~ 1279 (1472)
..|..-.......++|+....++|..|. ++.+|. .|. +++|+.||++.|++...-|..|.++++|.+|-+-+++.++
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3444333333345667777778887743 455543 333 4778888888887777778888888888888887777777
Q ss_pred ccCCC-CCCC------------------------CCccEEecccccccccccc-cCCCCCcccEeeecCCCCCcc--CCC
Q 000471 1280 SFPEE-GLPS------------------------TKLTELTIYDCENLKALPN-CMHNLTSLLILEIRGCPSVVS--FPE 1331 (1472)
Q Consensus 1280 ~l~~~-~~~l------------------------~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~n~~l~~--~p~ 1331 (1472)
.+|.. |..+ ++|..|.+.+|. ...++. .|..+.+++.+.+..|+.+.. +|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccch
Confidence 77753 3333 444445555533 233333 566666777777766652110 110
Q ss_pred ---------------------------------CCCCCCccee---EeccccCCCCCCccccccccccceeeeccCCCCC
Q 000471 1332 ---------------------------------DGFPTNLQSL---EVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDL 1375 (1472)
Q Consensus 1332 ---------------------------------~~~~~~L~~L---~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 1375 (1472)
..+...++.+ -.+.|....+.|...|..+++|+.|+|++|.++.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 0011123333 2344445567777789999999999999987776
Q ss_pred CCCCCC--CccccceeccCCCCcCcccccC-CCCCcCceeeccCCCCCCCCCCC-CCccccceecccCCcchHHhhccCC
Q 000471 1376 VSPPPF--PASLTNLWISDMPDLESISSIG-ENLTSLETLRLFNCPKLKYFPEQ-GLPKSLSRLSIHNCPLIEKRCRKDE 1451 (1472)
Q Consensus 1376 ~~~~~~--~~~L~~L~l~~~~~l~~i~~~~-~~l~~L~~L~l~~~~~l~~lp~~-~~~~sL~~L~l~~c~~l~~~~~~~~ 1451 (1472)
..-..| ...++.|.|..| .++.+.+.. .++..|++|+|++|+....-|.. ....+|..|++-.||..|+ |+..|
T Consensus 289 i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn-C~l~w 366 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN-CRLAW 366 (498)
T ss_pred hhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc-cchHH
Confidence 655554 568999999999 677766543 88999999999999554444433 3367999999999999999 99999
Q ss_pred CCCCCc
Q 000471 1452 GKYWPM 1457 (1472)
Q Consensus 1452 ~~~w~~ 1457 (1472)
..+|-.
T Consensus 367 l~~Wlr 372 (498)
T KOG4237|consen 367 LGEWLR 372 (498)
T ss_pred HHHHHh
Confidence 999954
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=3.5e-10 Score=135.59 Aligned_cols=301 Identities=15% Similarity=0.084 Sum_probs=175.0
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 184 NEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
.+..++||++++++|...+...- .......+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 34569999999999999985431 1123456789999999999999999985433222234567777777788889999
Q ss_pred HHHhhcCC-CCCCcccHHHHHHHHHhhhC--CCeEEEEEeCCCCCC----HhhHHhhcccccCCCCCcE--EEEEcCChH
Q 000471 264 ILNSVASD-QCKDKDDLNLLQEKLKKQLS--GNKFLLVLDDVWNEN----YIRWSELRCPFVAGAAGSK--IVVTTRNLV 334 (1472)
Q Consensus 264 i~~~l~~~-~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~~s~--iivTtR~~~ 334 (1472)
++.++... ......+.+++.+.+.+.+. +++.+||||+++... ...+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 99998762 22123345666667777664 457899999997642 1223333322221 12333 566666544
Q ss_pred HHHhhC-------CCCceeCCCCChHhHHHHHHhhhcCCC--CCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh--c--
Q 000471 335 VAERMG-------ADPVYQLKELSDDDCLCVLTQISLGAR--DFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL--R-- 401 (1472)
Q Consensus 335 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~--~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L--~-- 401 (1472)
+..... ....+.+.+++.++..+++..++.... ....+..++.+++......|..+.|+.++-.+. .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332221 124578999999999999988763221 111222223333333333455777777765432 1
Q ss_pred -CCC--ChhhHHHHHhhcccccCCCCcccchhhcccCCChhhHhHhhhhccCCC--CCccChHHHHHH--HHHcCCcccc
Q 000471 402 -GRD--DPRDWEFVLKTDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFPK--DYEFQEEEIILL--WTAEGLLDQE 474 (1472)
Q Consensus 402 -~~~--~~~~w~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~--~~~i~~~~li~~--w~a~g~i~~~ 474 (1472)
+.. +.+..+.+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-..+
T Consensus 265 ~~~~~I~~~~v~~a~~~~--------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~ 336 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS--------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP 336 (394)
T ss_pred cCCCCcCHHHHHHHHHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc
Confidence 111 244454444332 0123445678999998887766653321 123445444432 2232211110
Q ss_pred cCCccHHHHHHHHHHHHHhCCCccc
Q 000471 475 YNGRKMEDLGREFVRELHSRSLFQQ 499 (1472)
Q Consensus 475 ~~~~~~~~~~~~~~~~L~~~~ll~~ 499 (1472)
. -......|+.+|...|+++.
T Consensus 337 ---~-~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 337 ---R-THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred ---C-cHHHHHHHHHHHHhcCCeEE
Confidence 0 12335668999999999875
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=2.5e-13 Score=127.65 Aligned_cols=86 Identities=29% Similarity=0.520 Sum_probs=77.7
Q ss_pred CccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCceeecCCCCCcccCCCccc
Q 000471 611 IFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLRNSTANSLKEMPKGFG 690 (1472)
Q Consensus 611 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 690 (1472)
+..+| .+.++.+...|.||+|.++.+|+.|..|.+|+.|++.+ +.++++|..|+.|++||+|+++-|. +..+|.+||
T Consensus 23 f~~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 23 FEELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred Hhhcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhh-hhcCccccC
Confidence 34444 45578889999999999999999999999999999998 7899999999999999999999887 889999999
Q ss_pred ccccccccC
Q 000471 691 KLTSLLTLG 699 (1472)
Q Consensus 691 ~L~~L~~L~ 699 (1472)
.++.|+.|+
T Consensus 100 s~p~levld 108 (264)
T KOG0617|consen 100 SFPALEVLD 108 (264)
T ss_pred CCchhhhhh
Confidence 999999884
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=3.2e-12 Score=161.48 Aligned_cols=286 Identities=25% Similarity=0.319 Sum_probs=178.7
Q ss_pred cCCcceEEEecCCCC-CccCCc-ccCCCCcCcEEecCCc-cccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCc
Q 000471 596 HLPRLRVFSLRGCGN-IFNLPN-EIGNLKHLRCLNLSRT-RIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLH 672 (1472)
Q Consensus 596 ~l~~Lr~L~L~~~~~-~~~lp~-~i~~L~~Lr~L~L~~~-~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 672 (1472)
..+.|++|-+.+|.. +..++. .|..+++||+|||++| .+.++|++|++|.+||+|+|++ +.+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 445799999999842 677764 4788999999999987 6789999999999999999999 77999999999999999
Q ss_pred eeecCCCCCcccCCCcccccccccccCceEec-CCCCcccccccCccccCCceEEecccCCCCccccchhccCCCCCCCe
Q 000471 673 HLRNSTANSLKEMPKGFGKLTSLLTLGRFVVG-KDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLEA 751 (1472)
Q Consensus 673 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 751 (1472)
+|++..+..+..+|..+..|.+|++|..+... ..+...+.++.+|.+|+ .+.+..... .....+..+..|..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLRS 694 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHHH
Confidence 99999988777777777779999999877665 44455677777777776 444421110 00111222222222
Q ss_pred EEEEecCCcccCccchhHHHHHhccCCCCCCCCeEEEEeeCCCCCCc-ccCC---CC-cccccEEEEcCCCC-CCCCCCC
Q 000471 752 LLLKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGGTKFPI-WLGD---SS-FSKLARLELRRCTS-TSLPSVG 825 (1472)
Q Consensus 752 L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~---~~-l~~L~~L~L~~~~~-~~l~~l~ 825 (1472)
+...... .. .........+..+.+|+.|.+.++.+..... |... .. |+++..+...+|.. ..+.+..
T Consensus 695 ~~~~l~~------~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 695 LLQSLSI------EG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred HhHhhhh------cc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 2111000 00 0111234456667788888888887764322 3211 12 45666666667766 4444455
Q ss_pred CCCCccceeecCCCCceEeCccccCCC----CCCCCCCccEE-eccCcccccccccCCCCCcccccCCcccEeeecCCcC
Q 000471 826 QLPFLKELRISGMDGVKSVGSEFYGNS----RSVPFPSLETL-SFFDMREWEEWIPCGAGEEVDEVFPKLRKLSLFHCHK 900 (1472)
Q Consensus 826 ~l~~L~~L~L~~~~~l~~i~~~~~~~~----~~~~fp~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 900 (1472)
-.|+|+.|.+..|..++.+....-... ...+|++++.+ .+.+.+.+..+.... -.+++|+.+.+..|++
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~------l~~~~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP------LSFLKLEELIVEECPK 841 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc------cCccchhheehhcCcc
Confidence 667888888888777766543322110 11335555555 344444444433222 1244455555555555
Q ss_pred cc
Q 000471 901 LQ 902 (1472)
Q Consensus 901 L~ 902 (1472)
+.
T Consensus 842 l~ 843 (889)
T KOG4658|consen 842 LG 843 (889)
T ss_pred cc
Confidence 43
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=4.5e-09 Score=124.65 Aligned_cols=301 Identities=14% Similarity=0.095 Sum_probs=171.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh-ccC---cceEEEEecCCCCHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHY---EIKAWTCVSEDFDVFRIS 261 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~ 261 (1472)
..++||++++++|..++.... .......+.|+|++|+|||++++.++++.... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 469999999999999986421 11234568999999999999999999743211 111 135778887777788899
Q ss_pred HHHHHhhc---CCCCCCcccHHHHHHHHHhhhC--CCeEEEEEeCCCCCC---HhhHHhhcccc-cCCC--CCcEEEEEc
Q 000471 262 KSILNSVA---SDQCKDKDDLNLLQEKLKKQLS--GNKFLLVLDDVWNEN---YIRWSELRCPF-VAGA--AGSKIVVTT 330 (1472)
Q Consensus 262 ~~i~~~l~---~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~~s~iivTt 330 (1472)
..++.++. ........+..+....+.+.+. +++++||||+++... ......+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999984 2222122234445555555553 568999999997752 11122222211 1111 233455555
Q ss_pred CChHHHHhhC-------CCCceeCCCCChHhHHHHHHhhhcCC-CCCCCCccHHHHHHHHHHHhCCChhHH-HHHHhhh-
Q 000471 331 RNLVVAERMG-------ADPVYQLKELSDDDCLCVLTQISLGA-RDFTRHLSLKEVGEQIVIKCGGLPLAA-KTLGGLL- 400 (1472)
Q Consensus 331 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~glPLal-~~~~~~L- 400 (1472)
........+. ....+.+.+.+.++..+++..++... ......++..+.+.+++....|.|..+ .++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5443322111 12457899999999999998886311 111122333345566777778888544 3322211
Q ss_pred ---cC-C--CChhhHHHHHhhcccccCCCCcccchhhcccCCChhhHhHhhhhccCC--CCCccChHHHHHHHH--HcCC
Q 000471 401 ---RG-R--DDPRDWEFVLKTDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFP--KDYEFQEEEIILLWT--AEGL 470 (1472)
Q Consensus 401 ---~~-~--~~~~~w~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp--~~~~i~~~~li~~w~--a~g~ 470 (1472)
.. . -+.+..+.+.+.. -.....-++..||.+.|..+..++..- ++..+...++...+- ++.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~--------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~- 323 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI--------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED- 323 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh-
Confidence 11 1 1133333333221 012334466789999887776655221 333455666655331 221
Q ss_pred cccccCCccHHHHHHHHHHHHHhCCCcccc
Q 000471 471 LDQEYNGRKMEDLGREFVRELHSRSLFQQS 500 (1472)
Q Consensus 471 i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 500 (1472)
+.. ....+.....++..|...|++...
T Consensus 324 ~~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 324 IGV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred cCC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 110 112245677889999999999864
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.09 E-value=5.7e-09 Score=117.95 Aligned_cols=182 Identities=20% Similarity=0.135 Sum_probs=114.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHH----HHHHHHHh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLN----LLQEKLKK 288 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~l~~ 288 (1472)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..++..++.+.. . .+.. .+...+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-G-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-C-CCHHHHHHHHHHHHHH
Confidence 4588999999999999999999753321 11 12333 33345777888899888876532 1 2222 23333333
Q ss_pred h-hCCCeEEEEEeCCCCCCHhhHHhhccccc---CCCCCcEEEEEcCChHHHHhhC----------CCCceeCCCCChHh
Q 000471 289 Q-LSGNKFLLVLDDVWNENYIRWSELRCPFV---AGAAGSKIVVTTRNLVVAERMG----------ADPVYQLKELSDDD 354 (1472)
Q Consensus 289 ~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~~s~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 354 (1472)
. ..+++.++|+||++......++.+..... .......|++|... .....+. ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 26788999999999876666666543221 11222344555543 2222221 12357899999999
Q ss_pred HHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 355 CLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 355 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
..+++...+..........-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887764322111111225788999999999999999988765
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.02 E-value=7.9e-09 Score=118.91 Aligned_cols=276 Identities=15% Similarity=0.110 Sum_probs=150.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+|||+++.++++..++..... .......+.++|++|+|||+||+.+++... ..+ ..+......... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCch-hHHHHH
Confidence 3699999999999998864321 123355688999999999999999987432 111 112111111111 222223
Q ss_pred HhhcCCCCCCcccH----HHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHhh--
Q 000471 266 NSVASDQCKDKDDL----NLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERM-- 339 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~-- 339 (1472)
..+.....--.++. ....+.+...+.+.+..+|+|+...... | ...++ +.+-|..||+...+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~--~---~~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARS--V---RLDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccc--e---eecCC---CeEEEEecCCccccCHHHHh
Confidence 33322110000111 1123445555556666677776644321 1 11121 245556677764433221
Q ss_pred CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCChhhHHHHHhhcccc
Q 000471 340 GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWN 419 (1472)
Q Consensus 340 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~~w~~~~~~~~~~ 419 (1472)
.....+++++++.++..+++.+.+..... .. -.+.+..|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 11346789999999999999988743221 11 14677889999999997765555432 11110000000
Q ss_pred cCCC---CcccchhhcccCCChhhHhHhh-hhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHHHH-HHHhC
Q 000471 420 LRDS---DILPALRVSYHFLPPQLKQCFA-YCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREFVR-ELHSR 494 (1472)
Q Consensus 420 ~~~~---~i~~~l~~sy~~L~~~~k~~fl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 494 (1472)
...+ .....+...|..++++.+..+. .++.++.+ .+..+.+.... |. ....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHc
Confidence 1100 1122256678899998887776 55666543 34443332221 11 1234666677 69999
Q ss_pred CCccccC
Q 000471 495 SLFQQSS 501 (1472)
Q Consensus 495 ~ll~~~~ 501 (1472)
+|++..+
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997543
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=1.6e-08 Score=120.66 Aligned_cols=291 Identities=19% Similarity=0.222 Sum_probs=185.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC-CCHHHHHHHHHHhhcCCCCC
Q 000471 196 EEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-FDVFRISKSILNSVASDQCK 274 (1472)
Q Consensus 196 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 274 (1472)
.++++.|... .+.|.+.|..|+|.||||++.+... ....-..++|.+..+. .++..+...++..+..-.+.
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4455555432 3579999999999999999999874 1122346899998765 67888888888888743321
Q ss_pred ------------CcccHHHHHHHHHhhhC--CCeEEEEEeCCCCCCHhhH-HhhcccccCCCCCcEEEEEcCChHH---H
Q 000471 275 ------------DKDDLNLLQEKLKKQLS--GNKFLLVLDDVWNENYIRW-SELRCPFVAGAAGSKIVVTTRNLVV---A 336 (1472)
Q Consensus 275 ------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~-~~l~~~l~~~~~~s~iivTtR~~~v---~ 336 (1472)
...+...+.+.+...+. .++..+||||..-...... +.+...+.....+-.+|||||...- +
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 12233344444444443 5689999999865432222 2333333444567899999998642 2
Q ss_pred HhhCCCCceeC----CCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCChhhHHHH
Q 000471 337 ERMGADPVYQL----KELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFV 412 (1472)
Q Consensus 337 ~~~~~~~~~~l----~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~~w~~~ 412 (1472)
+.--.+...++ -.++.+|+-++|....... -+ +..++.+.+..+|-+-|+..++=.++.+.+.+.-...
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 11111223333 3689999999998764111 11 4567889999999999999999888744332221111
Q ss_pred HhhcccccCCCCccc-chhhcccCCChhhHhHhhhhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHHHHHH
Q 000471 413 LKTDIWNLRDSDILP-ALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREFVREL 491 (1472)
Q Consensus 413 ~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L 491 (1472)
+.-. ..-+.+ ...--++.||+++|..++-+|+++.- -+.|+..- +-++.+..++++|
T Consensus 250 LsG~-----~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~amLe~L 307 (894)
T COG2909 250 LSGA-----ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAMLEEL 307 (894)
T ss_pred ccch-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHHHHHH
Confidence 1100 000111 11223688999999999999998541 12333321 1134477889999
Q ss_pred HhCCCcc-ccCCCCCcEEEehhHHHHHHHhhcc
Q 000471 492 HSRSLFQ-QSSKDASRFVMHDLINDLARWAAGE 523 (1472)
Q Consensus 492 ~~~~ll~-~~~~~~~~~~mHdlv~~~a~~~~~~ 523 (1472)
.+++++- +-++...+|+.|.+..||.+..-..
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999875 4456677999999999998865543
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.99 E-value=1.6e-08 Score=116.78 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=151.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+|+|+++.++.+..++..... .....+.+.|+|++|+||||+|+.+++... ..+ .++.. ........+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~-~~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSG-PALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEec-ccccChHHHHHHH
Confidence 4699999999999888754211 123456788999999999999999997432 111 11211 1112222233333
Q ss_pred HhhcCCCCCCcccHH----HHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHhh--
Q 000471 266 NSVASDQCKDKDDLN----LLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERM-- 339 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~----~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~-- 339 (1472)
..+.....--.++.+ ...+.+...+.+.+..+|+|+..+..... ..++ ..+-|..|+|...+....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~-----~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR-----LDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee-----ecCC---CceEEeecCCcccCCHHHHH
Confidence 333221100001111 12233444455555666666654432111 1111 234556677744332221
Q ss_pred CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCChhhHHHHHhhcccc
Q 000471 340 GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWN 419 (1472)
Q Consensus 340 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~~w~~~~~~~~~~ 419 (1472)
.....+++++++.++..+++.+.+....- .. -.+.+..|++.|+|.|-.+..+...+. .|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-EI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC
Confidence 11346799999999999999988744321 11 146789999999999975555554321 22211100 01
Q ss_pred cCCC---CcccchhhcccCCChhhHhHhh-hhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHHHH-HHHhC
Q 000471 420 LRDS---DILPALRVSYHFLPPQLKQCFA-YCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREFVR-ELHSR 494 (1472)
Q Consensus 420 ~~~~---~i~~~l~~sy~~L~~~~k~~fl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 494 (1472)
.... .....+...|..|++..+..+. ....|+.+ .+..+.+.... .. . .+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~--~----~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE--E----RDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC--C----cchHHHHhhHHHHHc
Confidence 1111 2334466778899988888775 66677665 45555443321 11 1 123454555 89999
Q ss_pred CCccccC
Q 000471 495 SLFQQSS 501 (1472)
Q Consensus 495 ~ll~~~~ 501 (1472)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997544
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.98 E-value=2e-09 Score=119.33 Aligned_cols=194 Identities=25% Similarity=0.227 Sum_probs=100.8
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH---
Q 000471 188 VYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI--- 264 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 264 (1472)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.. +..-...+|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 799999999999998653 24689999999999999999998732 22111344444433332211 1111
Q ss_pred -------HHhhc----CCCC-----C----CcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC------HhhHHhhccccc
Q 000471 265 -------LNSVA----SDQC-----K----DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN------YIRWSELRCPFV 318 (1472)
Q Consensus 265 -------~~~l~----~~~~-----~----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~~~l~~~l~ 318 (1472)
.+.+. .... . .......+...+.+ .+++++||+||+.... ..-...+...+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 11121 1100 0 11222333333332 2445999999996653 111122222222
Q ss_pred C--CCCCcEEEEEcCChHHHHh--------hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCC
Q 000471 319 A--GAAGSKIVVTTRNLVVAER--------MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGG 388 (1472)
Q Consensus 319 ~--~~~~s~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 388 (1472)
. ......+|+++....+... .+....+.+++++.+++++++...+-...+ - +.-.+..++|++.+||
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIK--L-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhc--c-cCCHHHHHHHHHHhCC
Confidence 2 1233345555554544433 122335899999999999999986533211 1 1124667999999999
Q ss_pred ChhHHHH
Q 000471 389 LPLAAKT 395 (1472)
Q Consensus 389 lPLal~~ 395 (1472)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9988764
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=4.2e-11 Score=139.92 Aligned_cols=180 Identities=16% Similarity=0.041 Sum_probs=78.5
Q ss_pred cccccccccccccc----ccccCCCCCCcccceEEeccccccc------cccchh-ccCCcchhhhccccccccCccccC
Q 000471 1194 TMLEHLQVRFCSNL----AFLSRNGNLPQALKYLRVEDCSKLE------SLAERL-DNTSLEEITISVLENLKSLPADLH 1262 (1472)
Q Consensus 1194 ~~L~~L~l~~~~~l----~~~~~~~~~~~~L~~L~l~~c~~l~------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~l~ 1262 (1472)
.+|+.+.+.+|... ..+.......++++.|+++++..-. .++..+ ..++|+.|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 34666666665421 1112222233446666666543221 111111 234566666665555443333333
Q ss_pred CCCC---ccEEeeccCCCcc----ccCCCCCCC-CCccEEecccccccc----cccccCCCCCcccEeeecCCCCCc---
Q 000471 1263 NLHH---LQKIWINYCPNLE----SFPEEGLPS-TKLTELTIYDCENLK----ALPNCMHNLTSLLILEIRGCPSVV--- 1327 (1472)
Q Consensus 1263 ~l~~---L~~L~Ls~~~~l~----~l~~~~~~l-~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~n~~l~--- 1327 (1472)
.+.+ |++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|....
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 3332 6666666654331 111122223 456666666655442 122334445556666666653221
Q ss_pred -cCCCC-CCCCCcceeEeccccCCCCCCc---cccccccccceeeeccCCC
Q 000471 1328 -SFPED-GFPTNLQSLEVRGLKISKPLPE---WGFNRFTSLRRFTICGGCP 1373 (1472)
Q Consensus 1328 -~~p~~-~~~~~L~~L~l~~n~~~~~~~~---~~l~~l~~L~~L~Ls~n~~ 1373 (1472)
.++.. ...++|+.|++++|.+.+.... ..+..+++|++|++++|..
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 01110 1224566666666655422110 1234455566666655443
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=5.4e-11 Score=138.97 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=62.8
Q ss_pred cchhhhccccccc----cCccccCCC-CCccEEeeccCCCcc----ccCCCCCCCCCccEEecccccccc----cccccC
Q 000471 1243 LEEITISVLENLK----SLPADLHNL-HHLQKIWINYCPNLE----SFPEEGLPSTKLTELTIYDCENLK----ALPNCM 1309 (1472)
Q Consensus 1243 L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~Ls~~~~l~----~l~~~~~~l~~L~~L~Ls~c~~l~----~lp~~l 1309 (1472)
|+.|++++|.... .+...+..+ ++|++|++++|.... .++..+..+++|++|++++|...+ .++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5555555554331 112334455 778888888876552 223334445678888888876552 233345
Q ss_pred CCCCcccEeeecCCCCCcc----CCCC-CCCCCcceeEeccccCCC
Q 000471 1310 HNLTSLLILEIRGCPSVVS----FPED-GFPTNLQSLEVRGLKISK 1350 (1472)
Q Consensus 1310 ~~l~~L~~L~L~~n~~l~~----~p~~-~~~~~L~~L~l~~n~~~~ 1350 (1472)
..+++|++|++++|..... +... ..+++|++|++++|.+.+
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 5567888888888743211 1111 345778888888887764
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.89 E-value=7.6e-08 Score=115.54 Aligned_cols=302 Identities=14% Similarity=0.113 Sum_probs=163.4
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcch---hccCc--ceEEEEecCCCCHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRV---QRHYE--IKAWTCVSEDFDVFR 259 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 259 (1472)
+..+.|||+|+++|...|...-. +.....++.|+|++|.|||+.++.|.+.... +.... .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35688999999999998865321 2233467889999999999999999864311 11112 356787777778888
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhh-C--CCeEEEEEeCCCCCCHhhHHhhccccc-CCCCCcEEEE--EcCCh
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQL-S--GNKFLLVLDDVWNENYIRWSELRCPFV-AGAAGSKIVV--TTRNL 333 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~~s~iiv--TtR~~ 333 (1472)
++..|..++............+....+...+ . ....+||||+++......-+.+...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 9999998885543322223333444444443 2 234699999996542111111211111 1123555554 33321
Q ss_pred H--------HHHhhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCC
Q 000471 334 V--------VAERMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD 405 (1472)
Q Consensus 334 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~ 405 (1472)
+ +...++. ..+...|++.++-.+++..++-.......+..++-+|+.++...|..-.||.++-.+...+..
T Consensus 913 DLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1 2222222 235679999999999999988543222233334444454554455566777766655543211
Q ss_pred ----hhhHHHHHhhcccccCCCCcccchhhcccCCChhhHhHhhhhccCCC---CCccChHHHHHHH--HHc--C-Cccc
Q 000471 406 ----PRDWEFVLKTDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFPK---DYEFQEEEIILLW--TAE--G-LLDQ 473 (1472)
Q Consensus 406 ----~~~w~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~---~~~i~~~~li~~w--~a~--g-~i~~ 473 (1472)
.+.-+.+.... . ...+.-....||.+.|..+..+...-+ ...++-..+.... +++ | .+..
T Consensus 992 skVT~eHVrkAleei----E----~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv 1063 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----F----DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM 1063 (1164)
T ss_pred CccCHHHHHHHHHHH----H----hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC
Confidence 11222222111 0 111233446789888776654442211 1134444443322 222 1 1110
Q ss_pred ccCCccHHHHHHHHHHHHHhCCCcccc
Q 000471 474 EYNGRKMEDLGREFVRELHSRSLFQQS 500 (1472)
Q Consensus 474 ~~~~~~~~~~~~~~~~~L~~~~ll~~~ 500 (1472)
...-+ ...+|+.+|...|+|-..
T Consensus 1064 ---~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1064 ---CSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred ---CCcHH-HHHHHHHHHHhcCeEEec
Confidence 11122 567788888888887653
No 35
>PF05729 NACHT: NACHT domain
Probab=98.85 E-value=1.1e-08 Score=106.22 Aligned_cols=144 Identities=18% Similarity=0.264 Sum_probs=88.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhcc----CcceEEEEecCCCCHH---HHHHHHHHhhcCCCCCCcccHHHHHHHH
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRH----YEIKAWTCVSEDFDVF---RISKSILNSVASDQCKDKDDLNLLQEKL 286 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~l 286 (1472)
|++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+..... .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHHHHHHH
Confidence 58999999999999999999875332222 3456677666554432 33333333332211 1111111111
Q ss_pred HhhhCCCeEEEEEeCCCCCCHh-------hHHhhcccccC--CCCCcEEEEEcCChHH---HHhhCCCCceeCCCCChHh
Q 000471 287 KKQLSGNKFLLVLDDVWNENYI-------RWSELRCPFVA--GAAGSKIVVTTRNLVV---AERMGADPVYQLKELSDDD 354 (1472)
Q Consensus 287 ~~~l~~k~~LlVlDdv~~~~~~-------~~~~l~~~l~~--~~~~s~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 354 (1472)
.-+.++++||+|++++.... .+..+...+.. ...+.++|||+|.... .........+++.+|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 12478999999999775421 12222222222 2468999999998765 3334444679999999999
Q ss_pred HHHHHHhhh
Q 000471 355 CLCVLTQIS 363 (1472)
Q Consensus 355 ~~~lf~~~a 363 (1472)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987753
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.83 E-value=1.3e-10 Score=126.15 Aligned_cols=296 Identities=15% Similarity=0.223 Sum_probs=174.9
Q ss_pred CcceEEecCCCCCCCChhhhhccCCCCcceEEeecCCCCCcCC---CCCCCCCccEEEEecCCCcccCchhhhcCCCCcc
Q 000471 1054 HLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRNCNSLVSFP---EVALPSQLRTVKIEYCNALISLPEAWMQNSNTSL 1130 (1472)
Q Consensus 1054 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 1130 (1472)
.|+.|.+.+|.....-+...+...++++++|.+.+|..+++.. ....+++|+++++..|..+++.........+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3555666666655555544444457777888777777665532 2345677888888888777777666555667888
Q ss_pred ceEeecccCCcccc---ccccCCCccceEEeccccccccccccccccccCCCCCccccccCCCCcccccccccccccccc
Q 000471 1131 ESLRIKGCDSLKYI---ARIQLPPSLKRLIVSRCWNLRTLIGEQDICSSSRGCTSLTYFSSENELPTMLEHLQVRFCSNL 1207 (1472)
Q Consensus 1131 ~~L~l~~c~~l~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 1207 (1472)
++|+++.|+.++.- ........++++... +|..+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k-------------------------------------------GC~e~ 255 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLK-------------------------------------------GCLEL 255 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhc-------------------------------------------ccccc
Confidence 88888888766541 011122223333333 33322
Q ss_pred c--cccCCCCCCcccceEEeccccccccccch---hccCCcchhhhccccccccCc--cccCCCCCccEEeeccCCCccc
Q 000471 1208 A--FLSRNGNLPQALKYLRVEDCSKLESLAER---LDNTSLEEITISVLENLKSLP--ADLHNLHHLQKIWINYCPNLES 1280 (1472)
Q Consensus 1208 ~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~Ls~~~~l~~ 1280 (1472)
. .+........-+..+++.+|..+++.... .....|+.|+.++|...+..+ .--.++++|+.|-+++|...+.
T Consensus 256 ~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 256 ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh
Confidence 2 11111222234566667777777665422 234677888888877765432 2235678899999999886653
Q ss_pred cC--CCCCCCCCccEEeccccccccc--ccccCCCCCcccEeeecCCCCCccC-----CCC-CCCCCcceeEeccccCCC
Q 000471 1281 FP--EEGLPSTKLTELTIYDCENLKA--LPNCMHNLTSLLILEIRGCPSVVSF-----PED-GFPTNLQSLEVRGLKISK 1350 (1472)
Q Consensus 1281 l~--~~~~~l~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~n~~l~~~-----p~~-~~~~~L~~L~l~~n~~~~ 1350 (1472)
.. .-..+.+.|+.+++.+|..... +-.--.+++.|++|.+++|..++.. ... .....|+.|.+++++...
T Consensus 336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 336 RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 32 2234567889999888865432 2222357888999999988777655 111 345678888888887754
Q ss_pred CCCccccccccccceeeeccCCCCCCCCCCCCccccceeccCCCCcCcccc--cCCCCCcCceeec
Q 000471 1351 PLPEWGFNRFTSLRRFTICGGCPDLVSPPPFPASLTNLWISDMPDLESISS--IGENLTSLETLRL 1414 (1472)
Q Consensus 1351 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~l~~L~~L~l 1414 (1472)
.-....+..++ +|+.+++.+|....+-+. ....+|+++..-+
T Consensus 416 d~~Le~l~~c~----------------------~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 416 DATLEHLSICR----------------------NLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred HHHHHHHhhCc----------------------ccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 33222333333 455556666665544322 2256777666544
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=1.6e-10 Score=125.36 Aligned_cols=136 Identities=14% Similarity=0.242 Sum_probs=77.5
Q ss_pred cceEEeccCCCCCccc--hhhcCCCCccEEEeccCCCccccCC---CCCCCCcceEEecCCCCCCCChhhhhccCCCCcc
Q 000471 1008 LQFLKLSKCEGLTRLP--QALLTLSSLTEMRISGCASLVSFPQ---AALPSHLRTVKIEDCNALESLPEAWMHNSNSSLE 1082 (1472)
Q Consensus 1008 L~~L~Ls~~~~~~~l~--~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 1082 (1472)
|+.|.+++|...+.-+ .....++++++|++.+|..+++... ..+.+.|+.|++..|..++..........+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 4556666665444322 2445677777777777766554321 2345777778888777777665544444478888
Q ss_pred eEEeecCCCCCcCC---CCCCCCCccEEEEecCCCcccCchhhhcCCCCccceEeecccCCccc
Q 000471 1083 SLKIRNCNSLVSFP---EVALPSQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKY 1143 (1472)
Q Consensus 1083 ~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 1143 (1472)
+|+++.|+.+..-. .......++.+...+|..++.-........++.+..+++..|..+++
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc
Confidence 88888887765521 12233445555555665444333333333444455555555555544
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=4.2e-07 Score=116.38 Aligned_cols=311 Identities=14% Similarity=0.150 Sum_probs=177.8
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh-ccCcceEEEEecCCC---CHHHHHHH
Q 000471 188 VYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHYEIKAWTCVSEDF---DVFRISKS 263 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~---~~~~~~~~ 263 (1472)
++||+.+++.|...+... ..+...++.|.|..|||||+++++|.....-+ +.|-...+-....+. ...+.+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 789999999999999765 34556799999999999999999998732111 122111111122221 12334444
Q ss_pred HHHhhcCCCCC--------------------------------------C--cccHH-----HHHHHHHhhh-CCCeEEE
Q 000471 264 ILNSVASDQCK--------------------------------------D--KDDLN-----LLQEKLKKQL-SGNKFLL 297 (1472)
Q Consensus 264 i~~~l~~~~~~--------------------------------------~--~~~~~-----~~~~~l~~~l-~~k~~Ll 297 (1472)
++.++...... + ....+ ..+..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 44444221100 0 00000 1122223333 3569999
Q ss_pred EEeCCCCCCHhhHHhhcccccCCC----CCcEEE--EEcCCh--HHHHhhCCCCceeCCCCChHhHHHHHHhhhcCCCCC
Q 000471 298 VLDDVWNENYIRWSELRCPFVAGA----AGSKIV--VTTRNL--VVAERMGADPVYQLKELSDDDCLCVLTQISLGARDF 369 (1472)
Q Consensus 298 VlDdv~~~~~~~~~~l~~~l~~~~----~~s~ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 369 (1472)
|+||+...+....+-+........ ....|. .|.+.. .+.........+.+.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 999996665444333322221111 111233 233322 2222223346799999999999999988763212
Q ss_pred CCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCC------CChhhHHHHHhhcccccCCCCcccchhhcccCCChhhHhH
Q 000471 370 TRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGR------DDPRDWEFVLKTDIWNLRDSDILPALRVSYHFLPPQLKQC 443 (1472)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~ 443 (1472)
....+....|+++..|+|+.+.-+-..+... .+...|..-..........+.+...+..-.+.||...|..
T Consensus 237 ---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 237 ---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred ---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHH
Confidence 1225778999999999999999988887664 2333443322111100001134445788899999999999
Q ss_pred hhhhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHhCCCcccc-----CCCCCc--E-EEehhHHH
Q 000471 444 FAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREFVRELHSRSLFQQS-----SKDASR--F-VMHDLIND 515 (1472)
Q Consensus 444 fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~-----~~~~~~--~-~mHdlv~~ 515 (1472)
....|++- -.|+.+.|...|-. ...+.+....+.|....++... ...... | ..||.|++
T Consensus 314 l~~AA~iG--~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 314 LKAAACIG--NRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHhC--ccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 99999994 45666666665532 2245566666666655555422 111111 2 46888887
Q ss_pred HHHH
Q 000471 516 LARW 519 (1472)
Q Consensus 516 ~a~~ 519 (1472)
.|-.
T Consensus 381 aaY~ 384 (849)
T COG3899 381 AAYN 384 (849)
T ss_pred HHhc
Confidence 7653
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.62 E-value=5.7e-07 Score=97.59 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=97.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
.+.+.|+|++|+|||+||+++++. .......+.|+.+.... ... ..+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~----------------------~~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS----------------------PAVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh----------------------HHHHhhcc-
Confidence 357899999999999999999984 22233345666653110 000 01111121
Q ss_pred CeEEEEEeCCCCCC-HhhHHh-hcccccCC-CCCcEEE-EEcCC---------hHHHHhhCCCCceeCCCCChHhHHHHH
Q 000471 293 NKFLLVLDDVWNEN-YIRWSE-LRCPFVAG-AAGSKIV-VTTRN---------LVVAERMGADPVYQLKELSDDDCLCVL 359 (1472)
Q Consensus 293 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~~s~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 359 (1472)
+.-+||+||+|... ...|+. +...+... ..|..+| +|++. +++...+....+++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998742 234543 22222211 2355554 45544 466666666778999999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 360 TQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
.+.++...- ..+ +++..-|++++.|..-++..+-..|
T Consensus 171 ~~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 998864331 111 5788899999998887766555444
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.59 E-value=2.8e-07 Score=101.00 Aligned_cols=172 Identities=24% Similarity=0.281 Sum_probs=101.5
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
+.+++|-+..+.++++ . +.+.-...||++|+||||||+.+.. .....| ..++...+-.+-++++
T Consensus 29 Q~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH
Confidence 4456666555555443 2 2456677999999999999999987 333333 3333333222222222
Q ss_pred HHhhcCCCCCCcccHHHHHHHH-HhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEE--EcCChHH---HHh
Q 000471 265 LNSVASDQCKDKDDLNLLQEKL-KKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV--TTRNLVV---AER 338 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv--TtR~~~v---~~~ 338 (1472)
.+.- +....+++.+|++|.|..-+..+-+.+. |.-..|.-|+| ||.++.. ...
T Consensus 93 ------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 93 ------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred ------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHH
Confidence 2222 2233489999999999765433333333 33346766666 6776632 122
Q ss_pred hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCC--CccH-HHHHHHHHHHhCCChhHH
Q 000471 339 MGADPVYQLKELSDDDCLCVLTQISLGARDFTR--HLSL-KEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 339 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~--~~~~-~~~~~~i~~~~~glPLal 393 (1472)
.....++.+++|+.++-.+++.+.+......-. ...+ ++....+++.++|--.++
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 244578999999999999999884422111111 1111 346677888888876544
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=4.4e-08 Score=117.71 Aligned_cols=180 Identities=29% Similarity=0.407 Sum_probs=133.8
Q ss_pred hccCCcceEEEecCCCCCccCCcccCCCC-cCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCc
Q 000471 594 LNHLPRLRVFSLRGCGNIFNLPNEIGNLK-HLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLH 672 (1472)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 672 (1472)
+..++.++.|++.++ .+.++|...+.+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhh
Confidence 345578999999999 9999998888885 99999999999999999999999999999999 57899998888999999
Q ss_pred eeecCCCCCcccCCCcccccccccccCceEecCCCCcccccccCccccCCceEEecccCCCCccccchhccCCCCCCCeE
Q 000471 673 HLRNSTANSLKEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLEAL 752 (1472)
Q Consensus 673 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 752 (1472)
.|++++|. +..+|..++.+..|++|...... .+
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-----~~----------------------------------------- 222 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNS-----II----------------------------------------- 222 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCc-----ce-----------------------------------------
Confidence 99999998 88999877677777776321110 00
Q ss_pred EEEecCCcccCccchhHHHHHhccCCCCCCCCeEEEEeeCCCCCCcccCCCCcccccEEEEcCCCCCCCCCCCCCCCccc
Q 000471 753 LLKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTSTSLPSVGQLPFLKE 832 (1472)
Q Consensus 753 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~ 832 (1472)
..+..+..+.++..+.+.++.+..+|.++.. +.+++.|++++|.+..++.++.+.+|+.
T Consensus 223 -------------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~i~~i~~~~~~~~l~~ 281 (394)
T COG4886 223 -------------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQISSISSLGSLTNLRE 281 (394)
T ss_pred -------------------ecchhhhhcccccccccCCceeeeccchhcc--ccccceeccccccccccccccccCccCE
Confidence 0111222233444444555555555555543 6668888888888876776778888888
Q ss_pred eeecCCCCceE
Q 000471 833 LRISGMDGVKS 843 (1472)
Q Consensus 833 L~L~~~~~l~~ 843 (1472)
|+++++.....
T Consensus 282 L~~s~n~~~~~ 292 (394)
T COG4886 282 LDLSGNSLSNA 292 (394)
T ss_pred EeccCcccccc
Confidence 88877654433
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=3e-09 Score=119.87 Aligned_cols=174 Identities=24% Similarity=0.317 Sum_probs=131.2
Q ss_pred HhccCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCc
Q 000471 593 LLNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLH 672 (1472)
Q Consensus 593 ~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 672 (1472)
.+..|-.|..|.|+.| .+..+|..+++|..|.||||+.|++..+|..++.|+ |+.|-+++ +++..+|..|+.+..|.
T Consensus 93 ~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 93 EACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHH
Confidence 3455566888889988 899999999999999999999999999999998774 89999998 67899999999999999
Q ss_pred eeecCCCCCcccCCCcccccccccccCceEecCCCCcccccccCccccCCceEEecccCCCCccccchhccCCCCCCCeE
Q 000471 673 HLRNSTANSLKEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLEAL 752 (1472)
Q Consensus 673 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 752 (1472)
+|+.+.|. +..+|..++.|++|+.|.....
T Consensus 170 ~ld~s~ne-i~slpsql~~l~slr~l~vrRn------------------------------------------------- 199 (722)
T KOG0532|consen 170 HLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN------------------------------------------------- 199 (722)
T ss_pred Hhhhhhhh-hhhchHHhhhHHHHHHHHHhhh-------------------------------------------------
Confidence 99999998 8889988999888887731100
Q ss_pred EEEecCCcccCccchhHHHHHhccCCCCCCCCeEEEEeeCCCCCCcccCCCCcccccEEEEcCCCCCCCCC----CCCCC
Q 000471 753 LLKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTSTSLPS----VGQLP 828 (1472)
Q Consensus 753 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~l~~----l~~l~ 828 (1472)
.. ...++.+. .-.|..|++++|++..+|..+.. +..|++|.|.+|.++..|. -|...
T Consensus 200 ---------------~l-~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 200 ---------------HL-EDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQSPPAQICEKGKVH 260 (722)
T ss_pred ---------------hh-hhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCCChHHHHhcccee
Confidence 00 01122222 12366778888888888877653 7788888888888766653 24455
Q ss_pred CccceeecCC
Q 000471 829 FLKELRISGM 838 (1472)
Q Consensus 829 ~L~~L~L~~~ 838 (1472)
--++|+..-|
T Consensus 261 IFKyL~~qA~ 270 (722)
T KOG0532|consen 261 IFKYLSTQAC 270 (722)
T ss_pred eeeeecchhc
Confidence 5566666554
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.55 E-value=2.5e-07 Score=104.56 Aligned_cols=160 Identities=26% Similarity=0.467 Sum_probs=95.0
Q ss_pred CCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCCCCCCCccee
Q 000471 1262 HNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSL 1341 (1472)
Q Consensus 1262 ~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L 1341 (1472)
..+.+++.|++++| .+..+|. -.++|++|.+++|..+..+|..+. ++|++|++++|..+..+| ++|+.|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-----~sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-----ESVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-----cccceE
Confidence 34567778888877 5666662 123688888888777777776553 478888888876665444 467777
Q ss_pred EeccccCC--CCCCccccccccccceeeeccCCCC-CCCCC-CCCccccceeccCCCCcCcccccCCCCCcCceeeccCC
Q 000471 1342 EVRGLKIS--KPLPEWGFNRFTSLRRFTICGGCPD-LVSPP-PFPASLTNLWISDMPDLESISSIGENLTSLETLRLFNC 1417 (1472)
Q Consensus 1342 ~l~~n~~~--~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~~~-~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~~ 1417 (1472)
+++++... +.+| ++|+.|.+.+++.. ....+ .+|.+|++|++++|..+. +|..+. .+|++|+++.|
T Consensus 118 ~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCc-------chHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 77655432 2222 24666666443211 12222 366788888888876442 332222 57888887754
Q ss_pred CCC-CCCCCCCCccccceecccCCcch
Q 000471 1418 PKL-KYFPEQGLPKSLSRLSIHNCPLI 1443 (1472)
Q Consensus 1418 ~~l-~~lp~~~~~~sL~~L~l~~c~~l 1443 (1472)
... -.++...+++++ .|++.+|-.+
T Consensus 188 ~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 188 QKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ccccccCccccccccc-Eechhhhccc
Confidence 311 123333456677 7777777543
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.6e-08 Score=104.55 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=89.2
Q ss_pred cCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCC-CCCCCcc
Q 000471 1261 LHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPED-GFPTNLQ 1339 (1472)
Q Consensus 1261 l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~-~~~~~L~ 1339 (1472)
+.....|++|+||+| .++.+.++..-.|.++.|++|+|.+... ..++.+++|+.|+|++| .++.+..+ ..+-|.+
T Consensus 280 ~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 444567888888884 4556666666667888888888765543 34778888888888888 45555444 5677888
Q ss_pred eeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCCCCccccceeccCCCCcCcccccCCCCCcCceeeccCCCC
Q 000471 1340 SLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLETLRLFNCPK 1419 (1472)
Q Consensus 1340 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~~~~ 1419 (1472)
.|.+++|.+.... +++.+.+|..||+++|++.. +..+. .+.++|.|++|.+.+||.
T Consensus 356 tL~La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~--------------------ldeV~-~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 356 TLKLAQNKIETLS---GLRKLYSLVNLDLSSNQIEE--------------------LDEVN-HIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeehhhhhHhhhh---hhHhhhhheeccccccchhh--------------------HHHhc-ccccccHHHHHhhcCCCc
Confidence 8888888764322 56677777777776654421 12222 447888999999998874
Q ss_pred C
Q 000471 1420 L 1420 (1472)
Q Consensus 1420 l 1420 (1472)
-
T Consensus 412 ~ 412 (490)
T KOG1259|consen 412 A 412 (490)
T ss_pred c
Confidence 3
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.4e-08 Score=111.13 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=94.6
Q ss_pred cCCCCCccEEeeccCCCccccCCC-CCCCCCccEEecccccccc-cccccCCCCCcccEeeecCCCCCccCCC-CCCCCC
Q 000471 1261 LHNLHHLQKIWINYCPNLESFPEE-GLPSTKLTELTIYDCENLK-ALPNCMHNLTSLLILEIRGCPSVVSFPE-DGFPTN 1337 (1472)
Q Consensus 1261 l~~l~~L~~L~Ls~~~~l~~l~~~-~~~l~~L~~L~Ls~c~~l~-~lp~~l~~l~~L~~L~L~~n~~l~~~p~-~~~~~~ 1337 (1472)
...+|+|+.|+|+.|....-.... -..++.|+.|.|+.|.... .+-.....+|+|+.|.+.+|..+..... ...+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 345677777777775433221111 1234677788888877652 2334456778888888888853332222 256778
Q ss_pred cceeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCC--------CCccccceeccCCCC--cCcccccCCCCC
Q 000471 1338 LQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPP--------FPASLTNLWISDMPD--LESISSIGENLT 1407 (1472)
Q Consensus 1338 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~--------~~~~L~~L~l~~~~~--l~~i~~~~~~l~ 1407 (1472)
|++|||++|++...--....+.++.|+.|+++.+.+.....++ .+++|++|++..|+. ..++. .+..++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~l~ 326 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-HLRTLE 326 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc-hhhccc
Confidence 8888888888765442224677888888888776655444443 256777888877743 22222 235666
Q ss_pred cCceeeccCC
Q 000471 1408 SLETLRLFNC 1417 (1472)
Q Consensus 1408 ~L~~L~l~~~ 1417 (1472)
+|+.|.+-.|
T Consensus 327 nlk~l~~~~n 336 (505)
T KOG3207|consen 327 NLKHLRITLN 336 (505)
T ss_pred hhhhhhcccc
Confidence 7777766544
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.5e-08 Score=111.04 Aligned_cols=198 Identities=13% Similarity=0.039 Sum_probs=107.5
Q ss_pred CCcchhhhccccccccCc-cccCCCCCccEEeeccCCCcc--ccCCCCCCCCCccEEecccccccccccccC-CCCCccc
Q 000471 1241 TSLEEITISVLENLKSLP-ADLHNLHHLQKIWINYCPNLE--SFPEEGLPSTKLTELTIYDCENLKALPNCM-HNLTSLL 1316 (1472)
Q Consensus 1241 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~Ls~~~~l~--~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~ 1316 (1472)
..|+++.+.++....... .....|++++.|+||+|-+.. .+.....++++|+.|+|+.|....-..... ..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 455666665544322111 245567777888887753322 222334556777777777765432221111 3566777
Q ss_pred EeeecCCCCCccCCCC---CCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCC-----CCccccce
Q 000471 1317 ILEIRGCPSVVSFPED---GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPP-----FPASLTNL 1388 (1472)
Q Consensus 1317 ~L~L~~n~~l~~~p~~---~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~-----~~~~L~~L 1388 (1472)
.|.|++|... .-... ...|+|+.|++.+|........ ....+..|++|+|++|.+. +++. .++.|..|
T Consensus 201 ~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li--~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 201 QLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLI--DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred eEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCccc--ccccccccccccchhhh
Confidence 7777777432 11110 3457777777777753332222 3455667777777775442 2222 24566666
Q ss_pred eccCCCCcCcc--ccc-----CCCCCcCceeeccCCCC--CCCCCCCCCccccceecccCCcch
Q 000471 1389 WISDMPDLESI--SSI-----GENLTSLETLRLFNCPK--LKYFPEQGLPKSLSRLSIHNCPLI 1443 (1472)
Q Consensus 1389 ~l~~~~~l~~i--~~~-----~~~l~~L~~L~l~~~~~--l~~lp~~~~~~sL~~L~l~~c~~l 1443 (1472)
.++.| .+.++ |+. ...+++|++|++..|+. -..+.+....++|+.|.+..|+.-
T Consensus 277 nls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666 33332 222 14677777777777754 333333345667777777666653
No 47
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1e-06 Score=104.95 Aligned_cols=177 Identities=19% Similarity=0.203 Sum_probs=104.8
Q ss_pred ceeechhHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 187 KVYGREKEKEE---IIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 187 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
++||++..+.. +.+++... ....+.++|++|+||||+|+.+++. .... |+.++.......-+++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHH
Confidence 58888877665 77777443 3456788999999999999999873 2222 2222222111111111
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEE--EcCChHHH---H
Q 000471 264 ILNSVASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV--TTRNLVVA---E 337 (1472)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv--TtR~~~v~---~ 337 (1472)
+ .+..... ..+++.+|++|+++.......+.+...+. .|..++| ||.+.... .
T Consensus 80 i------------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 80 V------------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred H------------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 2 1122111 24578899999998876555555555443 2444444 34443211 1
Q ss_pred hhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHh
Q 000471 338 RMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGG 398 (1472)
Q Consensus 338 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 398 (1472)
......++.+.+++.++.++++.+.+....... ..--.+..+.|++.|+|.+..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 112236789999999999999988653211100 011246678899999999977654443
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=4.6e-06 Score=97.43 Aligned_cols=194 Identities=16% Similarity=0.143 Sum_probs=111.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++.......+. ...+..-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 358999999999999886532 245678999999999999999986422111100 00000000111111
Q ss_pred Hhhc-------CCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHH
Q 000471 266 NSVA-------SDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVA 336 (1472)
Q Consensus 266 ~~l~-------~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~ 336 (1472)
.... .......++..++.+.+... ..+++-++|+|+++......++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 1000 00000111122222222111 12456699999998876656777766666555566777766543 333
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
... +....+++.+++.++..+.+...+...+... -.+.++.|++.++|.|..+..
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 222 2235789999999999988887653322111 146678899999998864433
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.47 E-value=2e-06 Score=94.23 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcC
Q 000471 191 REKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVAS 270 (1472)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1472)
.+..++.+.+++.. ...+.+.|+|++|+|||++|+.+++.. .......++++++.-.+.. ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~~---~~------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQAD---PE------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHhH---HH-------
Confidence 44566777776532 234678999999999999999998742 2233345566543321100 00
Q ss_pred CCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHh-hH-HhhcccccC-CCCCcEEEEEcCChH---------HHHh
Q 000471 271 DQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYI-RW-SELRCPFVA-GAAGSKIVVTTRNLV---------VAER 338 (1472)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~~s~iivTtR~~~---------v~~~ 338 (1472)
+...+.+ .-+||+||++..... .| +.+...+.. ...+.++|+||+... +...
T Consensus 84 ---------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 84 ---------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1111222 238999999765322 22 233332221 123457889887532 2223
Q ss_pred hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhh
Q 000471 339 MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGL 399 (1472)
Q Consensus 339 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~ 399 (1472)
+.....+++.++++++...++...+....- .. -.+..+.+++.++|.|..+.-+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL-QL---PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333457899999999999998876532211 11 1466788888999999887766543
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=4.6e-06 Score=95.69 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=116.7
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCc----chhccCcceEEEEe-cCCCCHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDD----RVQRHYEIKAWTCV-SEDFDVFRIS 261 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~ 261 (1472)
+++|-+..++.+..++..+. -.....++|+.|+||||+|+.++... ....|.|...|... +....+.+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 57899999999999986542 24577899999999999999998631 12345555555432 22222222 2
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHH-Hh-h
Q 000471 262 KSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVA-ER-M 339 (1472)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~-~~-~ 339 (1472)
+++.+.+... -..+++-++|+|+++......+..+...+.....++.+|++|.+.+.. .. .
T Consensus 79 r~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2222222211 123566678888887776677888888887777788999888765422 11 1
Q ss_pred CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 340 GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 340 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
....++.+.++++++....+.+...+ . . .+.++.++..++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-~---~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-I---K----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-C---C----HHHHHHHHHHcCCCHHHHHHH
Confidence 22357899999999998877654311 1 1 344778899999998755433
No 51
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.1e-06 Score=100.05 Aligned_cols=194 Identities=16% Similarity=0.131 Sum_probs=113.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++..... -|+.. ..+..-..-+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~------~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCE------TGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCC------cCCCC-CCCccCHHHHHHh
Confidence 369999999999999996542 24677899999999999999987632111 01110 0001101111111
Q ss_pred HhhcC-----CCCCCcccHHHHHHHHHh----hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-H
Q 000471 266 NSVAS-----DQCKDKDDLNLLQEKLKK----QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-V 335 (1472)
Q Consensus 266 ~~l~~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v 335 (1472)
..-.. ... .....+.+.+.+.. -..+++-++|+|++..........+...+.....+.++|++|.+.. +
T Consensus 83 ~g~hpDviEIDAA-s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 83 EGRFIDLIEIDAA-SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred cCCCCceEEeccc-ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 00000 000 01122222222211 1235667999999988766666666666655445667887776542 2
Q ss_pred HHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 336 AER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 336 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
... ......+++++++.++..+.+.+.+...+-... .+....|++.++|.+..+..+
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 211 233367899999999999888877643221111 466788999999987554433
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=4.1e-06 Score=101.11 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=114.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.......+. +..+..-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 369999999999999986542 245667999999999999998876321111110 00011111111111
Q ss_pred Hh-----hcCCCCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-H
Q 000471 266 NS-----VASDQCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-V 335 (1472)
Q Consensus 266 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v 335 (1472)
.. +..+.. .....+++.+.+... ..++.-++|||+++......|..+...+.......++|+||++.. +
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 10 000000 111222222222221 134556899999988877778887776665556778888777653 2
Q ss_pred HHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh-HHHHHHh
Q 000471 336 AERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL-AAKTLGG 398 (1472)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~~ 398 (1472)
...+ .....+.++.++.++..+.+.+.+....- .. -.+..+.|++.++|..- |+..+-.
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2111 22357899999999999998887633221 11 14677889999998664 5554333
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.43 E-value=3.3e-06 Score=99.13 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=108.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCc-ceEEEEecCCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYE-IKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 264 (1472)
.+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++-.+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 46899999999999988543 234678999999999999999987321 11122 1234443321100 00000
Q ss_pred H------HhhcCCCCCCcccHHHHHHHHHh---hh--CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh
Q 000471 265 L------NSVASDQCKDKDDLNLLQEKLKK---QL--SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 265 ~------~~l~~~~~~~~~~~~~~~~~l~~---~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~ 333 (1472)
. ..+...........+.....++. .. .+.+-+||+||+..........+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 00000000000111222222221 11 2345589999997665444444554443334457788877543
Q ss_pred H-HHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 334 V-VAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 334 ~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
. +.... .....+++.+++.++...++.+.+....- .. -.+.++.+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2 22222 22346788999999998888887643221 11 156788899999988765543
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.1e-06 Score=102.48 Aligned_cols=195 Identities=17% Similarity=0.166 Sum_probs=114.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++........... .+..-..-..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-------pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-------PCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-------CCCCchHHHHHh
Confidence 369999999999999986542 23456899999999999999998743211110000 000000000010
Q ss_pred Hh-------hcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHH
Q 000471 266 NS-------VASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVA 336 (1472)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~ 336 (1472)
.. +........+++.++.+.+.. ...+++-++|||++.......+..+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 000000011222333322221 124677899999998887677777777665544566776665543 333
Q ss_pred Hh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 337 ER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
.. ......|++++++.++..+.+.+.+-... .. .-.+.+..|++.++|.|.-+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 12236799999999999998887653221 11 11467888999999988654444
No 55
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.5e-06 Score=104.39 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=114.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|-+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.+.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358999999999999886542 24567899999999999999998743222222223333221100 000000000
Q ss_pred HhhcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHHHHhh-CCC
Q 000471 266 NSVASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVAERM-GAD 342 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v~~~~-~~~ 342 (1472)
..+........+.+.++.+.+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+.... ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00011001011222222222222 12356679999999877666677777766655455566665543 3332222 223
Q ss_pred CceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 343 PVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 343 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
..+++.+++.++..+.+.+.+...+-.. -.+.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 5789999999999999988764332111 1467888999999988644
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=5.1e-08 Score=100.87 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=96.0
Q ss_pred CCCCCcccEeeecCCCCCccCCCC-CCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCC-CCcccc
Q 000471 1309 MHNLTSLLILEIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPP-FPASLT 1386 (1472)
Q Consensus 1309 l~~l~~L~~L~L~~n~~l~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~-~~~~L~ 1386 (1472)
+....-|++|+|++| .++.+... ...|.++.|++++|.+...- .++.+++|++||||+|......-.. -+.+.+
T Consensus 280 ~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeeh---hhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 344567889999998 56777666 67789999999999886543 4788999999999987543222221 367889
Q ss_pred ceeccCCCCcCcccccCCCCCcCceeeccCCCCCCCC---CCCCCccccceecccCCcc
Q 000471 1387 NLWISDMPDLESISSIGENLTSLETLRLFNCPKLKYF---PEQGLPKSLSRLSIHNCPL 1442 (1472)
Q Consensus 1387 ~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~~~~l~~l---p~~~~~~sL~~L~l~~c~~ 1442 (1472)
+|.|+.| .++++. ++..+.+|..||+++|+ +..+ ...+.++.|+++.+.+||.
T Consensus 356 tL~La~N-~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 356 TLKLAQN-KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeehhhh-hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 9999998 566665 55889999999999985 3333 3336788999999999996
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=5.9e-07 Score=88.80 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=80.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchh---ccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQ---RHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQ 289 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 289 (1472)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++.+++..... ..+.+.+.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHHH
Confidence 4689999999999999999998742111 0134567999988889999999999999987652 34566666777777
Q ss_pred hCCC-eEEEEEeCCCCC-CHhhHHhhcccccCCCCCcEEEEEcCC
Q 000471 290 LSGN-KFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRN 332 (1472)
Q Consensus 290 l~~k-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtR~ 332 (1472)
+... ..+||+|+++.. ....++.+..... ..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7644 469999999775 5444555544333 566778777664
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.36 E-value=2.2e-08 Score=113.11 Aligned_cols=170 Identities=24% Similarity=0.261 Sum_probs=132.3
Q ss_pred cceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCceeecCC
Q 000471 599 RLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLRNST 678 (1472)
Q Consensus 599 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 678 (1472)
.-...||+.| .+..+|..++.+..|..|.|..|.|..+|..+++|..|.+|||+. +.+..+|..+..|+ |+.|-+++
T Consensus 76 dt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec
Confidence 3456788888 888899888888899999999999999999999999999999988 56888888888775 78888887
Q ss_pred CCCcccCCCcccccccccccCceEecCCCCcccccccCccccCCceEEecccCCCCccccchhccCCCCCCCeEEEEecC
Q 000471 679 ANSLKEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLEALLLKWSA 758 (1472)
Q Consensus 679 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 758 (1472)
|+ ++.+|..|+.+..|..|...
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s--------------------------------------------------------- 174 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVS--------------------------------------------------------- 174 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhh---------------------------------------------------------
Confidence 76 88888888865555555210
Q ss_pred CcccCccchhHHHHHhccCCCCCCCCeEEEEeeCCCCCCcccCCCCcccccEEEEcCCCCCCCCC-CCCCCCccceeecC
Q 000471 759 RDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTSTSLPS-VGQLPFLKELRISG 837 (1472)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~L~~ 837 (1472)
.|++ ...+..+..+.+|+.|.+..|....+|..+.. -.|.+|+++.|++..+|. |.+|..|++|.|.+
T Consensus 175 -------~nei-~slpsql~~l~slr~l~vrRn~l~~lp~El~~---LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 175 -------KNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS---LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred -------hhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC---CceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 0111 12333455566788888999999999988753 358999999999988886 99999999999998
Q ss_pred CCC
Q 000471 838 MDG 840 (1472)
Q Consensus 838 ~~~ 840 (1472)
|+.
T Consensus 244 NPL 246 (722)
T KOG0532|consen 244 NPL 246 (722)
T ss_pred CCC
Confidence 763
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.35 E-value=1.5e-05 Score=97.07 Aligned_cols=247 Identities=19% Similarity=0.156 Sum_probs=136.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|.++.++++.+|+..... ....+.+.|+|++|+||||+|++++++.. |+ .+-++.+...+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 4699999999999999865321 12267899999999999999999998431 22 222333332222 2222222
Q ss_pred HhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH----hhHHhhcccccCCCCCcEEEEEcCChH-HHH-hh
Q 000471 266 NSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY----IRWSELRCPFVAGAAGSKIVVTTRNLV-VAE-RM 339 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~-~~ 339 (1472)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... ..
T Consensus 86 ~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 2211110 00113678999999977532 224444443332 3345666664421 111 11
Q ss_pred -CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCC-C--hhhHHHHHhh
Q 000471 340 -GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD-D--PRDWEFVLKT 415 (1472)
Q Consensus 340 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~-~--~~~w~~~~~~ 415 (1472)
.....+.+.+++.++....+...+....- ..+ .+....|++.++|..-.+......+.... . .+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 22356889999999998888877643321 111 46788999999998776654444343321 1 222222221
Q ss_pred cccccCCCCcccchhhccc-CCChhhHhHhhhhccCCCCCccChHHHHHHHHHcCCccc
Q 000471 416 DIWNLRDSDILPALRVSYH-FLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQ 473 (1472)
Q Consensus 416 ~~~~~~~~~i~~~l~~sy~-~L~~~~k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~ 473 (1472)
......++.++..-+. .-+......+.. ..++. ..+-.|+.+.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122355666554443 222333332222 12333 35778999998753
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=9.9e-06 Score=96.61 Aligned_cols=199 Identities=14% Similarity=0.137 Sum_probs=112.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.......-.... + .+..+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 369999999999999996543 245678999999999999999876321100000000 0 000000001111111
Q ss_pred Hh-----hcCCCCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHH
Q 000471 266 NS-----VASDQCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVV 335 (1472)
Q Consensus 266 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v 335 (1472)
.. +..+.. .....+++.+.+... ..++.-++|||+++......+..+...+.....+.++|++|.+ ..+
T Consensus 89 aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 000000 111223222222221 2356679999999888777777777776654456666655554 444
Q ss_pred HHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 336 AERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
.... .....+.++.++.++..+.+.+.+....- .. -.+..+.|++.++|.|.....+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 22257899999999999988876532211 11 1355688999999999654443
No 61
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=7.4e-07 Score=90.12 Aligned_cols=106 Identities=28% Similarity=0.354 Sum_probs=50.9
Q ss_pred cCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhh-hhcccccEEecCCCcchhhhh--hhhcccCCCc
Q 000471 596 HLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLEDCHQLKKLC--KDMGNLRKLH 672 (1472)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~ 672 (1472)
.+.+|++|+|++| .++.++ .+..+.+|++|++++|.|+.+++.+ ..+++|+.|+|++| .+..+- ..+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcc
Confidence 4677888999988 888885 6888889999999999998887666 46888999999884 444432 3466788888
Q ss_pred eeecCCCCCcccCCC----cccccccccccCceEecC
Q 000471 673 HLRNSTANSLKEMPK----GFGKLTSLLTLGRFVVGK 705 (1472)
Q Consensus 673 ~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~ 705 (1472)
+|++.+|. +...+. -+..+++|+.|+...+..
T Consensus 117 ~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 117 VLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred eeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 99988887 544442 267778888886655544
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=1.4e-06 Score=92.29 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=32.8
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCc
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDD 237 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 237 (1472)
+||||+++++++...+... .....+++.|+|++|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999522 33456899999999999999999998743
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=98.30 E-value=1.1e-05 Score=92.66 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=105.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcc-eEEEEecCCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEI-KAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 264 (1472)
.+++|.++.++.|.+++... ..+.+.++|++|+||||+|+.+++.. ....|.. ++-+..+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 35889999888888877543 23457799999999999999998732 1112221 1112222211111 12222
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHHHhh-CCC
Q 000471 265 LNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-GAD 342 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~~~~-~~~ 342 (1472)
+..+..... ..-.++.-++|+|+++.........+...+......+++|+++... .+.... ...
T Consensus 85 i~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 211110000 0002456799999998876544455554444334567777776542 221111 122
Q ss_pred CceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHH
Q 000471 343 PVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAK 394 (1472)
Q Consensus 343 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 394 (1472)
..++++++++++....+...+-..+-... .+....|++.++|..-.+.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 46899999999999888877643221111 4667889999998774443
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=4.2e-06 Score=85.10 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=72.2
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhh
Q 000471 189 YGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSV 268 (1472)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1472)
+||+..++.+...+... ..+.+.|+|++|+||||+|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47889999999988542 346888999999999999999997432 222345666654443322211111000
Q ss_pred cCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhh---HHhhcccccCC---CCCcEEEEEcCChH
Q 000471 269 ASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIR---WSELRCPFVAG---AAGSKIVVTTRNLV 334 (1472)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~---~~~s~iivTtR~~~ 334 (1472)
............++.++|+||++...... +......+... ..+.+||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 01111122234567899999998642222 22222222221 35778888888643
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=4.5e-06 Score=97.18 Aligned_cols=192 Identities=15% Similarity=0.069 Sum_probs=112.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++..... +... ...+....+ -+.+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHHHH
Confidence 368999999999999986542 13467899999999999999998732111 0000 000111111 11111
Q ss_pred HhhcCC-------CCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHHH
Q 000471 266 NSVASD-------QCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVA 336 (1472)
Q Consensus 266 ~~l~~~-------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v~ 336 (1472)
...... .....+++.++.+.+... ..++.-++|+|++.......+..+...+........+|++|.. ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 111100 000112233333333221 2456679999999888777788877766544445555545543 3333
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
... .....|.+.+++.++..+.+.+.+...+- .- -.+....|++.++|.+.-+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~---e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV-QY---DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCChHHHH
Confidence 222 22357899999999998888877643221 11 1467788999999998543
No 66
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=1.4e-06 Score=85.14 Aligned_cols=119 Identities=22% Similarity=0.207 Sum_probs=78.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
+++.|.|+.|+||||++++++.+.. ....+++++..+....... ..+ ..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999987432 2345566665444221000 000 223334434447
Q ss_pred eEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHhh------CCCCceeCCCCChHhH
Q 000471 294 KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERM------GADPVYQLKELSDDDC 355 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 355 (1472)
+.+|+||++... .+|......+.+.....+|++|+........- +....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999776 56777766666655678999999987665331 1223578899988764
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.9e-05 Score=94.44 Aligned_cols=195 Identities=19% Similarity=0.172 Sum_probs=113.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcc-eEEEEecCCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEI-KAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 264 (1472)
.+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++.......... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 368999999999988775532 2356889999999999999999864221111000 000000000 000111
Q ss_pred HHh-------hcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEE-EcCChHH
Q 000471 265 LNS-------VASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV-TTRNLVV 335 (1472)
Q Consensus 265 ~~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv-TtR~~~v 335 (1472)
... +........+++.++.+.... -..+++-++|+|+++......|..+...+......+++|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 100 000000011222222222211 1346677999999988776778888776665555666654 5555555
Q ss_pred HHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 336 AERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
.... .....+++.+++.++....+.+.+...+.... .+....|++.++|.+.-+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4433 23357899999999999999888743321111 456778999999987544
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.27 E-value=1.7e-05 Score=92.35 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=105.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEe--cCCCCHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCV--SEDFDVFRISKS 263 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 263 (1472)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 35899999999999998543 234579999999999999999987421 11121 122222 1111111 1111
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHHHhh-CC
Q 000471 264 ILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-GA 341 (1472)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~~~~-~~ 341 (1472)
.+..+..... .....+-++|+|+++.........+...+......+++|+++... .+.... ..
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111110000 001345689999997665444555555544444556777776432 111111 12
Q ss_pred CCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHH
Q 000471 342 DPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAK 394 (1472)
Q Consensus 342 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 394 (1472)
...+++.++++++....+...+....-... .+.+..+++.++|.+.-+.
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 246789999999998888877643221111 4678889999999876543
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=1.4e-05 Score=99.25 Aligned_cols=203 Identities=18% Similarity=0.169 Sum_probs=119.8
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC---cceEEEEecCC---CCHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY---EIKAWTCVSED---FDVFRI 260 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~ 260 (1472)
+++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++..+....+ ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 5899999999988877432 24579999999999999999998754333322 12345544321 122222
Q ss_pred HHHH---------------HHhhcCCCC---------------CCccc-HHHHHHHHHhhhCCCeEEEEEeCCCCCCHhh
Q 000471 261 SKSI---------------LNSVASDQC---------------KDKDD-LNLLQEKLKKQLSGNKFLLVLDDVWNENYIR 309 (1472)
Q Consensus 261 ~~~i---------------~~~l~~~~~---------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 309 (1472)
...+ +...+.... ++... ....+..+.+.+.++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 111111000 00111 1235677888888899999988887776667
Q ss_pred HHhhcccccCCCCCcEEEE--EcCChHH-HHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHH
Q 000471 310 WSELRCPFVAGAAGSKIVV--TTRNLVV-AERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIK 385 (1472)
Q Consensus 310 ~~~l~~~l~~~~~~s~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~ 385 (1472)
|+.+...+........|+| ||++... ...+ .....+.+.+++.+|.++++.+.+-... .... .++.+.|++.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHC
Confidence 8877766665555544555 5664431 1111 1223578899999999999998764321 1111 3455566666
Q ss_pred hCCChhHHHHHHhh
Q 000471 386 CGGLPLAAKTLGGL 399 (1472)
Q Consensus 386 ~~glPLal~~~~~~ 399 (1472)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 65556666666544
No 70
>PTZ00202 tuzin; Provisional
Probab=98.26 E-value=2.5e-05 Score=87.65 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=104.8
Q ss_pred CCCcCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHH
Q 000471 181 SLVNEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRI 260 (1472)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 260 (1472)
.+.+..+|+||+++...+...|...+. ...+++.|+|++|+|||||++.+..... ..+++.... +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHH
Confidence 345567899999999999999965432 3456999999999999999999986432 123333333 67999
Q ss_pred HHHHHHhhcCCCCCCc-ccHHHHHHHHHhhh-C-CCeEEEEEeCCCCCCHhh-HHhhcccccCCCCCcEEEEEcCChHHH
Q 000471 261 SKSILNSVASDQCKDK-DDLNLLQEKLKKQL-S-GNKFLLVLDDVWNENYIR-WSELRCPFVAGAAGSKIVVTTRNLVVA 336 (1472)
Q Consensus 261 ~~~i~~~l~~~~~~~~-~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~~~-~~~l~~~l~~~~~~s~iivTtR~~~v~ 336 (1472)
++.++.+++.+..... +-.+.+.+.+.+.- . +++.+||+-==.-.+... +.+.. .+.....-|.|++---.+.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcc
Confidence 9999999997433221 22344555544432 2 677777764322211111 11111 233334557777654433322
Q ss_pred Hhh---CCCCceeCCCCChHhHHHHHHhhh
Q 000471 337 ERM---GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 337 ~~~---~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
-.. ..-..|.+.+++.++|.+...+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 112458899999999988876543
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.9e-05 Score=94.84 Aligned_cols=185 Identities=17% Similarity=0.136 Sum_probs=111.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc-------------------cCcce
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HYEIK 246 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 246 (1472)
.+++|-+..++.+..++..+. ....+.++|+.|+||||+|+.+++...... .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 358999999999999986532 245678999999999999999986221100 11112
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcE
Q 000471 247 AWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 325 (1472)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 325 (1472)
+++....... .++...+.+.+... ..+++-++|+|++.......++.+...+......++
T Consensus 91 ieidaas~~g-------------------vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTG-------------------VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccC-------------------HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 2222111111 11222233322221 235677999999987766667777776665545666
Q ss_pred EEE-EcCChHHHHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh-HHHHHHh
Q 000471 326 IVV-TTRNLVVAER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL-AAKTLGG 398 (1472)
Q Consensus 326 iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~~ 398 (1472)
+|+ ||....+... .....++++++++.++....+.+.+-..+ .. --.+....|++.++|.+- |+..+-.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~---~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-IN---SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 665 4443333322 22346789999999998887777543221 11 114567889999999764 4444433
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1e-06 Score=72.78 Aligned_cols=58 Identities=26% Similarity=0.509 Sum_probs=44.5
Q ss_pred CcceEEEecCCCCCccCC-cccCCCCcCcEEecCCccccccc-hhhhhcccccEEecCCCc
Q 000471 598 PRLRVFSLRGCGNIFNLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCH 656 (1472)
Q Consensus 598 ~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~ 656 (1472)
++|++|++++| .+..+| ..|.++++|++|++++|.|+.+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46778888888 788887 56777888888888888888775 467788888888887753
No 73
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.24 E-value=7.8e-07 Score=89.99 Aligned_cols=86 Identities=28% Similarity=0.481 Sum_probs=30.7
Q ss_pred ccCCcceEEEecCCCCCccCCcccC-CCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhh-cccCCCc
Q 000471 595 NHLPRLRVFSLRGCGNIFNLPNEIG-NLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDM-GNLRKLH 672 (1472)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~lp~~i~-~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 672 (1472)
.+...+|.|+|++| .|..+. .++ .+.+|+.|+|++|.|+.++ .+..|.+|++|++++ +.+..++..+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--
T ss_pred cccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCC
Confidence 34557899999999 888884 676 5899999999999999995 688999999999999 5677776666 4699999
Q ss_pred eeecCCCCCcccC
Q 000471 673 HLRNSTANSLKEM 685 (1472)
Q Consensus 673 ~L~l~~~~~~~~~ 685 (1472)
+|++++|. +..+
T Consensus 92 ~L~L~~N~-I~~l 103 (175)
T PF14580_consen 92 ELYLSNNK-ISDL 103 (175)
T ss_dssp EEE-TTS----SC
T ss_pred EEECcCCc-CCCh
Confidence 99999997 5544
No 74
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.7e-05 Score=95.11 Aligned_cols=197 Identities=13% Similarity=0.147 Sum_probs=110.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|++..++.+.+++..+. ....+.++|+.|+||||+|+.+++... |.-|... ..+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 368999999999999986542 235688999999999999999986321 1112111 0111111111111
Q ss_pred Hhhc-------CCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChHHH
Q 000471 266 NSVA-------SDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLVVA 336 (1472)
Q Consensus 266 ~~l~-------~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~v~ 336 (1472)
.... .......++++.+.+.+... ..+++-++|+|+++......+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 1110 00000111122222222211 12344469999998766566667766665444456666555 433343
Q ss_pred Hh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh-HHHHHHh
Q 000471 337 ER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL-AAKTLGG 398 (1472)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~~ 398 (1472)
.. ......+++.++++++....+...+...+.... .+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 223457899999999999888876633221111 4567889999999664 4444443
No 75
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.23 E-value=1.6e-05 Score=85.26 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=97.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhC
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLS 291 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1472)
...-+.+||++|+||||||+.+....+... ..||..|....-..-.+.|.++... ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhhh
Confidence 466788999999999999999997543322 4567777665544445555544321 12345
Q ss_pred CCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEE--EcCChHH---HHhhCCCCceeCCCCChHhHHHHHHhhhc--
Q 000471 292 GNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV--TTRNLVV---AERMGADPVYQLKELSDDDCLCVLTQISL-- 364 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~-- 364 (1472)
++|.+|.+|.|..-...+-+. .+|...+|.-++| ||.++.. +.....-.++.+++|..++-..++.+...
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999996543222222 2444456776665 7777642 22234446889999999999998887432
Q ss_pred C-CC---CCCCCcc---HHHHHHHHHHHhCCChh
Q 000471 365 G-AR---DFTRHLS---LKEVGEQIVIKCGGLPL 391 (1472)
Q Consensus 365 ~-~~---~~~~~~~---~~~~~~~i~~~~~glPL 391 (1472)
+ .. ++.+++. ...+.+-++..|+|-..
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 11 1222211 13456667777888664
No 76
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.8e-06 Score=93.49 Aligned_cols=91 Identities=21% Similarity=0.220 Sum_probs=62.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC--CCHHHHHHHHHHhhcCCCCCCccc-----HHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFRISKSILNSVASDQCKDKDD-----LNLLQEK 285 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~~ 285 (1472)
...++|+|++|+|||||+++++++.... +|+..+|+.+.+. .++.++++.+...+-......... .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999975444 8999999997777 789999999844333222211111 1112222
Q ss_pred HHhh-hCCCeEEEEEeCCCC
Q 000471 286 LKKQ-LSGNKFLLVLDDVWN 304 (1472)
Q Consensus 286 l~~~-l~~k~~LlVlDdv~~ 304 (1472)
.... -.++++++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 248999999999954
No 77
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.1e-05 Score=86.69 Aligned_cols=207 Identities=16% Similarity=0.118 Sum_probs=127.6
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHh
Q 000471 188 VYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNS 267 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 267 (1472)
+.+||++++++...|...-. ...+.-+.|+|.+|+|||+.++.|.+..+....=..+++|++....+..+++..|+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 89999999999988865321 2223348899999999999999999843222111127899999999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHhhhC--CCeEEEEEeCCCCCCHhhHHhhcccccCCC-CCcEE--EEEcCChHHHHhh---
Q 000471 268 VASDQCKDKDDLNLLQEKLKKQLS--GNKFLLVLDDVWNENYIRWSELRCPFVAGA-AGSKI--VVTTRNLVVAERM--- 339 (1472)
Q Consensus 268 l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~~s~i--ivTtR~~~v~~~~--- 339 (1472)
++.... ......+....+.+.+. ++.+++|||+++......-+.+...+.... ..++| |..+-+......+
T Consensus 97 ~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 97 LGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred cCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 974333 34555566666666664 679999999996642111012211122111 14444 3344444333322
Q ss_pred -----CCCCceeCCCCChHhHHHHHHhhhcCCC-CCCCCccHHHHHHHHHHHhCC-ChhHHHHHHh
Q 000471 340 -----GADPVYQLKELSDDDCLCVLTQISLGAR-DFTRHLSLKEVGEQIVIKCGG-LPLAAKTLGG 398 (1472)
Q Consensus 340 -----~~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~~~g-lPLal~~~~~ 398 (1472)
+.. .+...|-+.+|-..++..++-... +....++.-+.+..++..-+| --.|+..+.+
T Consensus 176 v~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 176 VKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 222 367889999999999988874321 112233334444445555554 4455555443
No 78
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.23 E-value=3.7e-05 Score=90.91 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=110.0
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh--------------------ccCcce
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ--------------------RHYEIK 246 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~ 246 (1472)
+++|.+..++.+.+++.... -...+.++|++|+||||+|+.+....... .+++ .
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~ 88 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-V 88 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-E
Confidence 58999999999999986542 24578899999999999998887532110 0111 1
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcE
Q 000471 247 AWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 325 (1472)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 325 (1472)
.+++...... ..+...+.+.+... ..+++-++|+|+++.........+...+......+.
T Consensus 89 ~~~~~~~~~~-------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 IEIDAASNNG-------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEeeccccCC-------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 1221111101 11122222222211 234566899999977655556666665544445667
Q ss_pred EEEEcCChH-HHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 326 IVVTTRNLV-VAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 326 iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
+|++|.+.. +.... .....+++.++++++..+.+...+-..+-..+ .+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 777765543 22222 22356788999999998888876643221111 4678889999999987665443
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.22 E-value=2e-05 Score=81.26 Aligned_cols=182 Identities=19% Similarity=0.206 Sum_probs=92.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+|||.+.-++.+.-++..... ..+...-+..||++|+||||||+.+++. ....|. +.+.. ...-..-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~-~i~k~~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGP-AIEKAGDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECC-C--SCHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccch-hhhhHHHHHHHH
Confidence 4699999888876555432211 2345677889999999999999999983 333332 22211 111001111111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccC--------CCCC-----------cEE
Q 000471 266 NSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVA--------GAAG-----------SKI 326 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~~-----------s~i 326 (1472)
.. + +++-+|.+|.+..-....-+.+..++.+ .+.+ +-|
T Consensus 97 ~~----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 97 TN----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred Hh----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11 1 2344666677766543322222222211 1111 223
Q ss_pred EEEcCChHHHHhhCCC--CceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhc
Q 000471 327 VVTTRNLVVAERMGAD--PVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLR 401 (1472)
Q Consensus 327 ivTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~ 401 (1472)
=-|||...+...+..- -+.+++..+.+|-.++..+.+..-.- +--++.+.+|++++.|-|--+.-+-+..+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4578765444333322 23579999999999999887633221 12257899999999999976665555443
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.1e-05 Score=95.28 Aligned_cols=194 Identities=14% Similarity=0.135 Sum_probs=109.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+........ -+..+.. -...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~----C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGV----CQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCcc----cHHHHHHh
Confidence 469999999999999986542 24578899999999999999887632111100 0000000 00000000
Q ss_pred Hh-----hcCCCCCCcccHHHHHHHHHh----hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-H
Q 000471 266 NS-----VASDQCKDKDDLNLLQEKLKK----QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-V 335 (1472)
Q Consensus 266 ~~-----l~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v 335 (1472)
.. +..... .....+.+.+.+.. -..+++-++|+|++..........+...+.......++|++|.+.. +
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 000000 11122222222221 1235667999999987665455556555544344567777765432 2
Q ss_pred HHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 336 AER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 336 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
... .+....+.+.+++.++....+.+.+-..+-.. -.+....|++.++|.+.-+..+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHH
Confidence 211 12224578899999999988887764322111 1467788999999988544433
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.1e-05 Score=96.06 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=113.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.......+. ...+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 369999999999999986542 234578999999999999999986321111000 00111111111211
Q ss_pred Hh-------hcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHH
Q 000471 266 NS-------VASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVA 336 (1472)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~ 336 (1472)
.. +........+++.++.+.+... ..+++-++|+|+++.........+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 0000000112222333222211 24677799999998877667777766665544566666655543 333
Q ss_pred Hh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 337 ER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
.. ......|.+++++.++..+.+.+.+-...- . .-.+....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-P---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 122367899999999999888876522211 1 11456778999999988754444
No 82
>PRK08727 hypothetical protein; Validated
Probab=98.20 E-value=2.4e-05 Score=85.19 Aligned_cols=148 Identities=17% Similarity=0.136 Sum_probs=89.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
..+.|+|..|+|||+||+++++.. ......+.++++.+ ....+ .+.+.. + .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~------------------~~~~~~-l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRL------------------RDALEA-L-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhH------------------HHHHHH-H-hc
Confidence 469999999999999999998742 23333455665322 11111 011111 1 12
Q ss_pred eEEEEEeCCCCCC-HhhHHhhcccccC--CCCCcEEEEEcCCh---------HHHHhhCCCCceeCCCCChHhHHHHHHh
Q 000471 294 KFLLVLDDVWNEN-YIRWSELRCPFVA--GAAGSKIVVTTRNL---------VVAERMGADPVYQLKELSDDDCLCVLTQ 361 (1472)
Q Consensus 294 ~~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 361 (1472)
.-+||+||+.... ...|......+.. ...|..||+|++.. ++...+....++++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996542 1223322222221 12466799999853 2333344456789999999999999998
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 362 ISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
++.... ... -+++..-|++.++|..-++
T Consensus 174 ~a~~~~-l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRG-LAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcC-CCC---CHHHHHHHHHhCCCCHHHH
Confidence 775422 111 1577888999998776655
No 83
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=4.7e-06 Score=94.50 Aligned_cols=136 Identities=30% Similarity=0.476 Sum_probs=99.6
Q ss_pred CCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCCCCCCCcceeEeccccCCCCCCcccccccccccee
Q 000471 1287 PSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRF 1366 (1472)
Q Consensus 1287 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 1366 (1472)
.+.+++.|++++| .+..+|. + -++|++|++++|..++.+|. ..+++|+.|++++|.....+|. +|+.|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~-------sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPE-------SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccccc-------ccceE
Confidence 3568999999999 5677772 2 24799999999999988885 4578999999999955455554 58888
Q ss_pred eeccCCCCCCCCCCCCccccceeccCCCCc--CcccccCCCC-CcCceeeccCCCCCCCCCCCCCccccceecccCCc
Q 000471 1367 TICGGCPDLVSPPPFPASLTNLWISDMPDL--ESISSIGENL-TSLETLRLFNCPKLKYFPEQGLPKSLSRLSIHNCP 1441 (1472)
Q Consensus 1367 ~Ls~n~~~~~~~~~~~~~L~~L~l~~~~~l--~~i~~~~~~l-~~L~~L~l~~~~~l~~lp~~~~~~sL~~L~l~~c~ 1441 (1472)
+++++ ....+..+|.+|+.|.+.++... ..+| ..+ ++|++|++++|..+. +|. .+|.+|++|+++.|.
T Consensus 118 ~L~~n--~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~-~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKGS--ATDSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPE-KLPESLQSITLHIEQ 188 (426)
T ss_pred EeCCC--CCcccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccc-cccccCcEEEecccc
Confidence 88653 33456778899999998654321 1122 223 689999999997553 443 378899999998764
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.4e-05 Score=94.12 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=111.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC--cceEEEEecCCCCHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY--EIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 263 (1472)
.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+........ ...-+ ..+..-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 358999999999999986542 24567899999999999999986532110000 00000 00111111111
Q ss_pred HHHhh-----cCCCCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-h
Q 000471 264 ILNSV-----ASDQCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-L 333 (1472)
Q Consensus 264 i~~~l-----~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~ 333 (1472)
|...- ..... .....+++.+.+... ..++.-++|||+|+......+..+...+.......++|++|.+ .
T Consensus 87 i~~g~h~D~~eldaa-s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 87 IDSGRFVDYTELDAA-SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHcCCCCceeecCcc-cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 10000 00000 111222222222211 1245568999999988777777777766654456666655543 3
Q ss_pred HHHHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 334 VVAER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 334 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
.+... ......+++++++.++..+.+.+.+...+-.. -.+....|++.++|.+.-+..+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 33322 23346789999999999888887663322111 1466788999999987554433
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.6e-05 Score=91.85 Aligned_cols=186 Identities=17% Similarity=0.171 Sum_probs=107.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhcc--C-----------------cce
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--Y-----------------EIK 246 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f-----------------~~~ 246 (1472)
.++||.+...+.+...+..+. -...+.++|++|+||||+|+.+++....... + ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 359999988888888875432 2356789999999999999999763211100 0 011
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcE
Q 000471 247 AWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 325 (1472)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 325 (1472)
..++.+..... ++...+.+.+.. ...+++-++|+|+++.........+...+........
T Consensus 89 ~el~aa~~~gi-------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGI-------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCH-------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 11111111111 111222222211 1235677999999976544445555555544333455
Q ss_pred EEEEcCC-hHHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCC-hhHHHHHHhh
Q 000471 326 IVVTTRN-LVVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGL-PLAAKTLGGL 399 (1472)
Q Consensus 326 iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~~~~ 399 (1472)
+|++|.+ ..+.... .....+++.+++.++....+.+.+....-... .+....|++.++|. +.|+..+-.+
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5544443 3343332 23357899999999998888887643221111 46678888888654 6666666553
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4e-05 Score=90.72 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=110.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh-------------------ccCcce
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-------------------RHYEIK 246 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 246 (1472)
.++||-+..++.+..++..+. -...+.++|+.|+||||+|+.++...... ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 368999999999988885542 23478899999999999999887521000 011112
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcE
Q 000471 247 AWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 325 (1472)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 325 (1472)
+.++.+....+. ++.++.+..... ..+++-++|+|++........+.+...+......++
T Consensus 88 ~eidaas~~~vd-------------------dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 88 IEIDAASNTSVD-------------------DIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEEecccCCCHH-------------------HHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 223322222211 122222221111 235667899999977766666677666665555667
Q ss_pred EEEEc-CChHHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 326 IVVTT-RNLVVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 326 iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
+|++| ....+.... .....+++.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+..+
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 66655 434444332 23467899999999999988887643321111 466788999999987544
No 87
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.3e-06 Score=105.03 Aligned_cols=175 Identities=20% Similarity=0.251 Sum_probs=91.9
Q ss_pred CCcchhhhccccccccCccccCCCC-CccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEee
Q 000471 1241 TSLEEITISVLENLKSLPADLHNLH-HLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILE 1319 (1472)
Q Consensus 1241 ~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 1319 (1472)
+.++.|++.+++.. .++.....+. +|+.|++++| .+..+|.....+++|+.|++++|+. ..+|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhhee
Confidence 44455554443332 2333333332 5666666663 3444444455566666666666443 33444344556666666
Q ss_pred ecCCCCCccCCCC-CCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCC-CCCCCCCccccceeccCCCCcC
Q 000471 1320 IRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDL-VSPPPFPASLTNLWISDMPDLE 1397 (1472)
Q Consensus 1320 L~~n~~l~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~~L~~L~l~~~~~l~ 1397 (1472)
+++| .+..+|.. ..+..|++|.+++|.....+. .+.++.++..+.+.+|.... ......+.+++.|++++| .+.
T Consensus 193 ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~ 268 (394)
T COG4886 193 LSGN-KISDLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QIS 268 (394)
T ss_pred ccCC-ccccCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccchhccccccceeccccc-ccc
Confidence 6666 45555554 344556666666664333332 35556666666655544333 233334455666666666 455
Q ss_pred cccccCCCCCcCceeeccCCCCCCCC
Q 000471 1398 SISSIGENLTSLETLRLFNCPKLKYF 1423 (1472)
Q Consensus 1398 ~i~~~~~~l~~L~~L~l~~~~~l~~l 1423 (1472)
.++. +..+.+|+.|+++++.....+
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccc-ccccCccCEEeccCccccccc
Confidence 5554 556666666666666544433
No 88
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=5.1e-05 Score=80.05 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=64.1
Q ss_pred CCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCC
Q 000471 292 GNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDF 369 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 369 (1472)
+.+-++|+||++......++.+...+......+.+|++|++. .+.... ....++++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 567789999998776566677776666555567777777654 222221 22357899999999998888776 2 1
Q ss_pred CCCccHHHHHHHHHHHhCCChhH
Q 000471 370 TRHLSLKEVGEQIVIKCGGLPLA 392 (1472)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~glPLa 392 (1472)
. .+.+..|++.++|.|..
T Consensus 170 -~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -C----HHHHHHHHHHcCCCccc
Confidence 1 46788999999999853
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.17 E-value=3.3e-05 Score=84.18 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=93.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
.+.+.|+|+.|+|||+||+++++.. ...-..+.++.+..... ...+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~~~---- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW---------------------FVPEVLEGMEQ---- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh---------------------hhHHHHHHhhh----
Confidence 3578999999999999999998742 22223345555532100 00111111111
Q ss_pred CeEEEEEeCCCCCCH-hhHHhhc-ccccCC-CCC-cEEEEEcCCh---------HHHHhhCCCCceeCCCCChHhHHHHH
Q 000471 293 NKFLLVLDDVWNENY-IRWSELR-CPFVAG-AAG-SKIVVTTRNL---------VVAERMGADPVYQLKELSDDDCLCVL 359 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~-~~~~~l~-~~l~~~-~~~-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 359 (1472)
--+|++||+..... ..|+... ..+... ..| .++|+||+.. ++...+....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 23789999965421 2343322 122111 123 4799999754 34455566678999999999999998
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 360 TQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
.+++.... ..- -+++..-|++.+.|..-++..+-..+
T Consensus 177 ~~~a~~~~-~~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 177 QLRARLRG-FEL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHcC-CCC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 88664321 111 15788889999998877665554443
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.3e-05 Score=93.20 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=108.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc-------------------cCcce
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HYEIK 246 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 246 (1472)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...... .|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 369999999999999996542 234678999999999999999886321111 11111
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcE
Q 000471 247 AWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 325 (1472)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 325 (1472)
+.++.+....+ +++.++.+.+.. -..++.-++|+|+|+.........+...+......++
T Consensus 91 ~eidaas~~~v-------------------~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 91 FEVDAASRTKV-------------------EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEEcccccCCH-------------------HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 22221111111 112222222111 1235666899999988776667766666655445677
Q ss_pred EEEEcCCh-HHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 326 IVVTTRNL-VVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 326 iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
+|++|.+. .+.... .....+++++++.++....+.+.+-..+- .. -.+....|++.++|.+.-+..
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHH
Confidence 77665443 332221 22356789999999887776665532221 11 135567889999998864443
No 91
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.16 E-value=2.5e-05 Score=97.69 Aligned_cols=171 Identities=23% Similarity=0.290 Sum_probs=98.0
Q ss_pred CceeechhHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKE---EIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
.+|+|.+..+. .+.+++... ....+.++|++|+||||+|+.+++. ...+|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 35889888774 455665432 3456789999999999999999973 333331 111110 000
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHHHhhh--CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEE--EcCChH--HH
Q 000471 263 SILNSVASDQCKDKDDLNLLQEKLKKQL--SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV--TTRNLV--VA 336 (1472)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv--TtR~~~--v~ 336 (1472)
.+.........+.+ .+++.++||||++......++.+...+. .|..++| ||.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111111121111 2467899999998765555555554332 3555555 344431 21
Q ss_pred Hh-hCCCCceeCCCCChHhHHHHHHhhhcC------CCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 337 ER-MGADPVYQLKELSDDDCLCVLTQISLG------ARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~------~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
.. .....++.+++++.++...++.+.+-. ..... --.+....|++.+.|..-.+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCHHHH
Confidence 11 122357899999999999998876531 11111 11456778888888875433
No 92
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=2.2e-06 Score=107.53 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=74.4
Q ss_pred cchhhhccccccccCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeecC
Q 000471 1243 LEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRG 1322 (1472)
Q Consensus 1243 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 1322 (1472)
++.|++++|...+.+|..+..+++|+.|+|++|...+.+|..+..+++|+.|+|++|...+.+|..+.++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555566666666677777777777777777776667777777777777777777777777777777777777777777
Q ss_pred CCCCccCCCC--CCCCCcceeEeccccCC
Q 000471 1323 CPSVVSFPED--GFPTNLQSLEVRGLKIS 1349 (1472)
Q Consensus 1323 n~~l~~~p~~--~~~~~L~~L~l~~n~~~ 1349 (1472)
|...+.+|.. ..+.++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 7666666654 22345566677666543
No 93
>PRK09087 hypothetical protein; Validated
Probab=98.15 E-value=5.4e-05 Score=81.46 Aligned_cols=143 Identities=19% Similarity=0.157 Sum_probs=88.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
.+.+.|||+.|+|||+|++.++.... ..+++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~----------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA----------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh----------------------hhc
Confidence 35689999999999999998886321 1133221 111111111 111
Q ss_pred CeEEEEEeCCCCCC--HhhHHhhcccccCCCCCcEEEEEcCC---------hHHHHhhCCCCceeCCCCChHhHHHHHHh
Q 000471 293 NKFLLVLDDVWNEN--YIRWSELRCPFVAGAAGSKIVVTTRN---------LVVAERMGADPVYQLKELSDDDCLCVLTQ 361 (1472)
Q Consensus 293 k~~LlVlDdv~~~~--~~~~~~l~~~l~~~~~~s~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 361 (1472)
-+|++||+.... +..+-.+...+. ..|..||+|++. ++....+....++++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 278889996532 222222222222 246779998873 34555556667899999999999999998
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHh
Q 000471 362 ISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGG 398 (1472)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 398 (1472)
.+.... ..-+ +++..-|++++.|..-++..+-.
T Consensus 165 ~~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 165 LFADRQ-LYVD---PHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHcC-CCCC---HHHHHHHHHHhhhhHHHHHHHHH
Confidence 874321 1111 57888899999988877765433
No 94
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=7e-05 Score=86.43 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=113.3
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceE------EEEecCCCCHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKA------WTCVSEDFDVF 258 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~------wv~~~~~~~~~ 258 (1472)
-.+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+.+..-......... =..+....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 3569999999999999986542 245688999999999999988875321111000000 00000000
Q ss_pred HHHHHHHHhh-------cCC--CC----CCcccHHHHHHHHHhhhC-----CCeEEEEEeCCCCCCHhhHHhhcccccCC
Q 000471 259 RISKSILNSV-------ASD--QC----KDKDDLNLLQEKLKKQLS-----GNKFLLVLDDVWNENYIRWSELRCPFVAG 320 (1472)
Q Consensus 259 ~~~~~i~~~l-------~~~--~~----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 320 (1472)
..-+.+...- ... .. .....++++. .+.+.+. +.+.++|+||++..+......+...+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0111111000 000 00 0111233322 2333332 55779999999888777777777666555
Q ss_pred CCCcEEEEEcCChH-HHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 321 AAGSKIVVTTRNLV-VAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 321 ~~~s~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
..++.+|++|.... +.... .....+.+.+++.++..+++...... .. .+....+++.++|.|..+..+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 45667777777653 32222 23357899999999999999875411 11 1223678999999998665554
No 95
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.14 E-value=3e-06 Score=94.04 Aligned_cols=287 Identities=17% Similarity=0.187 Sum_probs=176.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcc-eEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEI-KAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
..|.+.++|.|||||||++-.+.. ...-|.. ++++....-.+...+.-.....++...... +.....+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g----~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG----DSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc----hHHHHHHHHHH
Confidence 357899999999999999988875 4455654 555666666666666666666566543311 22334455666
Q ss_pred CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHhhCCCCceeCCCCChH-hHHHHHHhhhcCCC-C
Q 000471 291 SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSDD-DCLCVLTQISLGAR-D 368 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~-~ 368 (1472)
.++|.++|+||-...- ..-..+...+..+...-.|+.|+|..-. +..+..+.+.+|+.. ++.++|...+.... .
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7889999999984431 1222233334445556678889886532 234456778888775 78889877763221 1
Q ss_pred CCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCC-------hhhHHHHHhhc-ccccCCCCcccchhhcccCCChhh
Q 000471 369 FTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD-------PRDWEFVLKTD-IWNLRDSDILPALRVSYHFLPPQL 440 (1472)
Q Consensus 369 ~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~-------~~~w~~~~~~~-~~~~~~~~i~~~l~~sy~~L~~~~ 440 (1472)
..-...-...+.+|.++.+|.|++|...++..++-.. .+.|.....-. .-...+......+.+||.-|....
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 2222233577899999999999999999988876522 12233222110 001112367789999999999999
Q ss_pred HhHhhhhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHhCCCccccC-CCCCcEEEehhHHHHHH
Q 000471 441 KQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREFVRELHSRSLFQQSS-KDASRFVMHDLINDLAR 518 (1472)
Q Consensus 441 k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~~~~~~~mHdlv~~~a~ 518 (1472)
+-.|.-++.|...+.-. ...|.+.|-.... ..-.....+..+++.+++...+ .....|+.-+-++.|+.
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999998776543 3345554432100 1122344566777887775432 11223444444444443
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=6.3e-05 Score=87.51 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=108.0
Q ss_pred ceeechhHHHHHHHHHhcCCCC----CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLR----GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
+++|-+..++.+.+++..+... +..-..-+.++|+.|+|||++|+.++........- +..+ ..-..-+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~C----g~C~~C~ 77 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGC----GECRACR 77 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCC----CCCHHHH
Confidence 5889999999999999764210 00124568899999999999999987521110000 0000 0000000
Q ss_pred HHHHhhc-------CC-CCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh
Q 000471 263 SILNSVA-------SD-QCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 263 ~i~~~l~-------~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~ 333 (1472)
.+...-. .. .....+++..+.+.+.. -..+++-++|+|+++.........+...+.....+..+|++|.+.
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 0000000 00 00011112222222211 113455688889998876555566666555545566676666654
Q ss_pred -HHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 334 -VVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 334 -~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
.+.... .....+.+.+++.++..+.+.... + .. .+.+..+++.++|.|.....+.
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~----~~----~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G----VD----PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C----CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 333222 223678999999999998887432 1 11 3557889999999997654443
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.13 E-value=3.3e-05 Score=84.41 Aligned_cols=152 Identities=20% Similarity=0.155 Sum_probs=88.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
.+.+.|+|..|+|||+||+++++... ... ....+++...... . + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~-------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F-------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H-------------------hhc-c
Confidence 45788999999999999999987421 111 1334444322110 0 0 011 2
Q ss_pred CeEEEEEeCCCCCCHhhHHhhcccccCC-CCCc-EEEEEcCChHHH--------HhhCCCCceeCCCCChHhHHHHHHhh
Q 000471 293 NKFLLVLDDVWNENYIRWSELRCPFVAG-AAGS-KIVVTTRNLVVA--------ERMGADPVYQLKELSDDDCLCVLTQI 362 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~~s-~iivTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~ 362 (1472)
..-+||+||+.......-..+...+... ..+. .||+|++..... ..+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347889999654322222333333211 1333 467777653322 12233457899999998877777665
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 363 SLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
+-... ... -++..+.+++...|.+..+..+...+
T Consensus 170 ~~~~~-v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-LQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-CCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 42211 111 15678889999999999887777655
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.1e-05 Score=90.56 Aligned_cols=201 Identities=13% Similarity=0.105 Sum_probs=111.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEE-ecCCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTC-VSEDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 264 (1472)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.......+....|.. ....+..-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 368999999999999886532 234577999999999999999876322111111111110 00111111111111
Q ss_pred HHhhcCC----CCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChHH
Q 000471 265 LNSVASD----QCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLVV 335 (1472)
Q Consensus 265 ~~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~v 335 (1472)
....... ........+++.+..... ..+++-++|+|++.......+..+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1110000 000111123333221111 23566789999998776666777777666555566666555 44444
Q ss_pred HHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 336 AERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
.... ....++++.++++++..+.+...+-....... .+.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 3322 12246889999999988888776532211111 56788999999998754433
No 99
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.12 E-value=5e-06 Score=93.09 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=61.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC--CHHHHHHHHHHhhcCCCCCCcccHH-----HHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF--DVFRISKSILNSVASDQCKDKDDLN-----LLQEK 285 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~~ 285 (1472)
-.-..|+|++|+||||||++||++.... +|+..+||.+.+.. .+.++++.+...+-....+...... ...+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999975444 89999999999887 7778888876433322221111111 11111
Q ss_pred HHhh-hCCCeEEEEEeCCCC
Q 000471 286 LKKQ-LSGNKFLLVLDDVWN 304 (1472)
Q Consensus 286 l~~~-l~~k~~LlVlDdv~~ 304 (1472)
-+.. -.+++++|++|++..
T Consensus 248 Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHcCCCEEEEEEChHH
Confidence 1111 358999999999944
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=98.11 E-value=4.8e-05 Score=82.78 Aligned_cols=156 Identities=24% Similarity=0.245 Sum_probs=93.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
...+.|+|..|+|||.||+++++.. ...-..++|++..+ +... .. .+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhh
Confidence 3678999999999999999998732 22223456665432 1110 01 12222222
Q ss_pred CeEEEEEeCCCCCC-HhhHHh-hcccccC-CCCCcEEEEEcCChH---------HHHhhCCCCceeCCCCChHhHHHHHH
Q 000471 293 NKFLLVLDDVWNEN-YIRWSE-LRCPFVA-GAAGSKIVVTTRNLV---------VAERMGADPVYQLKELSDDDCLCVLT 360 (1472)
Q Consensus 293 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 360 (1472)
-. ++|+||+.... ...|.. +...+.. ...|.+||+|++... +...+....++++++++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899996432 124433 3222221 134667899887532 22333444678999999999999998
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 361 QISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
.++.... ..-+ +++..-|++++.|..-++..+-..|
T Consensus 177 ~ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7664332 1111 5788889999998877665555444
No 101
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=3.2e-06 Score=105.98 Aligned_cols=94 Identities=24% Similarity=0.330 Sum_probs=83.5
Q ss_pred cceEEEecCCCCCccCCcccCCCCcCcEEecCCcccc-ccchhhhhcccccEEecCCCcchhhhhhhhcccCCCceeecC
Q 000471 599 RLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLRNS 677 (1472)
Q Consensus 599 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 677 (1472)
.++.|+|++|..-..+|..|++|.+|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999444578999999999999999999998 899999999999999999988778999999999999999999
Q ss_pred CCCCcccCCCccccc
Q 000471 678 TANSLKEMPKGFGKL 692 (1472)
Q Consensus 678 ~~~~~~~~p~~i~~L 692 (1472)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998777888877653
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00011 Score=84.22 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=114.9
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc--cCcceEEEEecCCCCHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--HYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
-..++|-++..+.+...+..+. ....+.|+|+.|+||||+|+.+.+..-... .+.... ....+......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 4569999999999999996542 245688999999999999998876321100 011110 000111111223
Q ss_pred HHHHh-------hcCCC-C-----CCcccHHHHHHHHHhhh-----CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCc
Q 000471 263 SILNS-------VASDQ-C-----KDKDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGS 324 (1472)
Q Consensus 263 ~i~~~-------l~~~~-~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s 324 (1472)
.+... +..+. . .....++++. .+.+.+ .+++-++|+|+++..+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222 11100 0 0111233332 333333 3567799999998877666666666665444455
Q ss_pred EEEEEcCCh-HHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 325 KIVVTTRNL-VVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 325 ~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
.+|++|... .+.... .....+.+.+++.++..+++.+..... + --.+.+..|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555555433 332222 223578999999999999998743211 1 113557889999999998665544
No 103
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=7.8e-05 Score=90.77 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=107.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc-------------------cCcce
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HYEIK 246 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 246 (1472)
.++||-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+...... .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368999999999999986542 235668999999999999999976321110 01111
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcE
Q 000471 247 AWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 325 (1472)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 325 (1472)
+++..+.... .+++.++.+.... -..+++-++|+|+++.........+...+......+.
T Consensus 91 ~ei~~~~~~~-------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 91 IEVDAASNTQ-------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eEeeccccCC-------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 1221111111 1111112111111 1235677999999987765556666666655445666
Q ss_pred EEEEcCCh-HHHHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh-HHHHH
Q 000471 326 IVVTTRNL-VVAER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL-AAKTL 396 (1472)
Q Consensus 326 iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 396 (1472)
+|++|.+. .+... ......+++++++.++..+.+.+.+...+- . .-.+..+.|++.++|.+- |+..+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-P---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66665443 22211 111256899999999998888776532211 1 114567889999999875 44443
No 104
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.07 E-value=4.2e-05 Score=82.03 Aligned_cols=187 Identities=16% Similarity=0.161 Sum_probs=105.6
Q ss_pred ceeec-hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCc--ceEEEEecCCCCHHHHHHH
Q 000471 187 KVYGR-EKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYE--IKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 187 ~~vGr-~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 263 (1472)
.++|- .+..-...+.+.+.. +.....+.|+|..|+|||.|.+++++. ..+... .++++ +..+....
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHH
Confidence 34565 333344445554432 123456889999999999999999984 332222 24454 34455566
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHh-hHHhhcccccC--CCCCcEEEEEcCCh-------
Q 000471 264 ILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYI-RWSELRCPFVA--GAAGSKIVVTTRNL------- 333 (1472)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~~~l~~~l~~--~~~~s~iivTtR~~------- 333 (1472)
+...+... ..+ .+++.++ .-=+|++||++..... .|.+....+.. ...|.+||+|++..
T Consensus 79 ~~~~~~~~------~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 79 FADALRDG------EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHTT------SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHcc------cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 66555442 122 2333343 2347899999765322 23322211111 13466899999643
Q ss_pred --HHHHhhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhh
Q 000471 334 --VVAERMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGL 399 (1472)
Q Consensus 334 --~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~ 399 (1472)
++...+....++++++.++++-.+++.+.+....-. - -+++++-|++.+.+..-.+..+-..
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~-l---~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE-L---PEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S----HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC-C---cHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 344445566689999999999999999888543221 1 1577888888888777666555443
No 105
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.05 E-value=7.1e-05 Score=78.42 Aligned_cols=279 Identities=16% Similarity=0.151 Sum_probs=134.3
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+|||.++-++++.=.+..... ....+--|.++|++|.||||||.-+++. ....+ -++.+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----EecccccccChhhHHHHH
Confidence 4699999998888777655433 4456778999999999999999999984 22222 111111111111122222
Q ss_pred HhhcCCCCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHhhC-
Q 000471 266 NSVASDQCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMG- 340 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~- 340 (1472)
..+....---.+++..+...+.+. +.+-+.=|++.--... ..+...++++ +-|=-|||.-.+...+.
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~A-----rsv~ldLppF---TLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAA-----RSIRLDLPPF---TLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCcc-----ceEeccCCCe---eEeeeccccccccchhHH
Confidence 222221110011122111111111 1222222222211110 1111122221 12335888654433322
Q ss_pred -CCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCChhhHHHHHhhcccc
Q 000471 341 -ADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWN 419 (1472)
Q Consensus 341 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~~w~~~~~~~~~~ 419 (1472)
-.-+.+++..+.+|-.++..+.|..-. ... -++.+.+|+++..|-|.-+.-+-+..+ ++..+.... .
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i---~~~~a~eIA~rSRGTPRIAnRLLrRVR------Dfa~V~~~~--~ 238 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILG-IEI---DEEAALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG--D 238 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhC-CCC---ChHHHHHHHHhccCCcHHHHHHHHHHH------HHHHHhcCC--c
Confidence 123568889999999999988873211 111 146789999999999965544444332 222222110 0
Q ss_pred cCC---CCcccchhhcccCCChhhHhHhhhhccCCCCCccChHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHhCCC
Q 000471 420 LRD---SDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLGREFVRELHSRSL 496 (1472)
Q Consensus 420 ~~~---~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l 496 (1472)
... +.....|.+-=.+|+...++.+..+.-...+-.+--+.+.. +-| ....+.||+-|-| |++.||
T Consensus 239 I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~---~lg-----e~~~TiEdv~EPy---Liq~gf 307 (332)
T COG2255 239 IDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAA---ALG-----EDRDTIEDVIEPY---LIQQGF 307 (332)
T ss_pred ccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHH---Hhc-----CchhHHHHHHhHH---HHHhch
Confidence 000 01223334434556665555554444322222333333221 111 1234556555544 788888
Q ss_pred ccccCC
Q 000471 497 FQQSSK 502 (1472)
Q Consensus 497 l~~~~~ 502 (1472)
++....
T Consensus 308 i~RTpR 313 (332)
T COG2255 308 IQRTPR 313 (332)
T ss_pred hhhCCC
Confidence 887553
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.0001 Score=90.35 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=113.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCc--ceEEEEecCCCCHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYE--IKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 263 (1472)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... ...+-.+ ..-.--+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHH
Confidence 469999999999999996542 244688999999999999999986322111110 0000000 00011111
Q ss_pred HHHhhcC-------CCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChH
Q 000471 264 ILNSVAS-------DQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLV 334 (1472)
Q Consensus 264 i~~~l~~-------~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~ 334 (1472)
|...-.. ......+++.++.+.++.. ..+++-++|+|++........+.+...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2111100 0000112222333222211 23456689999998776556666666665544566666554 4444
Q ss_pred HHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 335 VAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 335 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
+...+ .....+++.+++.++....+.+.+-....... .+.+..|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 33222 23357899999999999888887633221111 4677889999999886554433
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00015 Score=89.03 Aligned_cols=193 Identities=14% Similarity=0.166 Sum_probs=109.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhcc-C---cceEE-EEecCCCCHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-Y---EIKAW-TCVSEDFDVFRI 260 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f---~~~~w-v~~~~~~~~~~~ 260 (1472)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.++...-.... . .|..- .+....++...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 358999999999999996542 2456789999999999999999763111000 0 00000 00000001000
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEE-EcCChHHHHh
Q 000471 261 SKSILNSVASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV-TTRNLVVAER 338 (1472)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv-TtR~~~v~~~ 338 (1472)
+........++++++.+.+... ..+++-++|+|++.......+..+...+........+|+ |++...+...
T Consensus 92 -------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 92 -------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred -------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000000112233333333221 235667999999987766667777666654444555554 4444444432
Q ss_pred -hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 339 -MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 339 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
......+++.+++.++..+.+...+-..+-... .+.++.|++.++|.+.-+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 233367899999999998888776532221111 35678899999997754333
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00013 Score=88.32 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=113.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++.......... ..++.-..-+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 358899988888888886532 2356778999999999999999864321110000 0011111111111
Q ss_pred Hhhc-------CCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHHH
Q 000471 266 NSVA-------SDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVA 336 (1472)
Q Consensus 266 ~~l~-------~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v~ 336 (1472)
.... .......++...+.+.+.. -..+++-+||+|+++......+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1100 0000011112222222221 12356679999999887666667777666543345566665554 3443
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh-hHHHHHHhhh
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP-LAAKTLGGLL 400 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~~~~L 400 (1472)
..+ .....+++++++.++....+...+........ .+.++.|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 22357899999999999888876643221111 467888999999965 6777766544
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00019 Score=84.87 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=103.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh------ccCcceEEEEecCCCCHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ------RHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~~~~~ 259 (1472)
.+++|.+..++.+..++..+. -.+.+.++|++|+||||+|+.+.+..... ..|...+ +......
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~---- 86 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAAS---- 86 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEecccc----
Confidence 358999999999999996532 24688899999999999999997632110 1111111 1110000
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChHHHH
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLVVAE 337 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~v~~ 337 (1472)
.....+...+.+.+.. -..+++-++|+|+++......+..+...+......+.+|++| +...+..
T Consensus 87 -------------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 87 -------------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -------------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 0001111111211111 122455689999997665455666655444333445566555 3322222
Q ss_pred h-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 338 R-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 338 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
. ......++..++++++....+...+...+-..+ .+.+..+++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 2 122356899999999998888876643221111 467888999999876533
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6e-08 Score=100.59 Aligned_cols=130 Identities=13% Similarity=0.119 Sum_probs=89.4
Q ss_pred CCcchhhhccccccc-cCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccc--cCCCCCcccE
Q 000471 1241 TSLEEITISVLENLK-SLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPN--CMHNLTSLLI 1317 (1472)
Q Consensus 1241 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~ 1317 (1472)
+.|+.+|++...+.. .+-..+..|.+|+.|.|.++..-..+...+..-.+|+.|+|+.|+.++.... -+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 568999998866554 3345567889999999999877777776666677999999999987765432 3578999999
Q ss_pred eeecCCCCCccCCC---CCCCCCcceeEeccccCC--CCCCccccccccccceeeecc
Q 000471 1318 LEIRGCPSVVSFPE---DGFPTNLQSLEVRGLKIS--KPLPEWGFNRFTSLRRFTICG 1370 (1472)
Q Consensus 1318 L~L~~n~~l~~~p~---~~~~~~L~~L~l~~n~~~--~~~~~~~l~~l~~L~~L~Ls~ 1370 (1472)
|+++.|...+..-. ...-++|+.|+++|+.-. ..........+++|.+||||.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 99999965544311 134577888888887532 111111234566666666655
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.0002 Score=87.14 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=114.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++........+ + ..++.-..-+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 368999999999999986532 245678999999999999999986321111000 0 0000001111111
Q ss_pred Hh---------hcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChH
Q 000471 266 NS---------VASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLV 334 (1472)
Q Consensus 266 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~ 334 (1472)
.. +........++..++.+.+... ..+++-++|+|++..........+...+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000112222333332221 23556689999998877667777776666555566666555 4444
Q ss_pred HHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh-HHHHHHhhh
Q 000471 335 VAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL-AAKTLGGLL 400 (1472)
Q Consensus 335 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~~~L 400 (1472)
+.... .....+++.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44332 33467899999999998888776543221111 4567788999999775 444444433
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00013 Score=90.80 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=112.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... ....++.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 369999999999999886532 235678999999999999999986321110000 001111122223332
Q ss_pred HhhcCC-------CCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHHH
Q 000471 266 NSVASD-------QCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVA 336 (1472)
Q Consensus 266 ~~l~~~-------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v~ 336 (1472)
.....+ .....+++.++.+.+... ..+++-++|+|++........+.+...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110 000111222222222211 2255779999999776555566666555544455666665543 3333
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
... .....+++.+++.++....+...+...+.... .+.+..|++.++|.+..+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 222 22356789999999988888877643221111 4678899999999886554443
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00026 Score=84.81 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=110.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|-+..++.+..++..+. -..+..++|+.|+||||+|+.+++..-....-+. ..+..-..-+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 358999999999999986542 2456789999999999999988753110000000 0000000000000
Q ss_pred HhhcC-----CCCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-H
Q 000471 266 NSVAS-----DQCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-V 335 (1472)
Q Consensus 266 ~~l~~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v 335 (1472)
..... ... .....+.+.+.+... ..+++-++|+|++..........+...+......+++|++|.+.. +
T Consensus 82 ~~~h~dv~eldaa-s~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 82 ENRHIDIIEMDAA-SNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred hcCCCeEEEeccc-cccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 00000 000 011123333332221 125567899999988776666667666655455677777776532 2
Q ss_pred HHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 336 AER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 336 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
... ......+++.+++.++..+.+.+.+-..+-.. -.+.++.|++.++|.+.-+..+
T Consensus 161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred chHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHH
Confidence 111 12235789999999999888877653322111 1467889999999998655444
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00029 Score=86.49 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=109.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEE-ecCCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTC-VSEDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 264 (1472)
.++||-+..++.+..++..+. -...+.++|+.|+||||+|+.+++.......++...|.. +...+..-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 368999999999999886532 234578999999999999998876322111111011110 00111111111111
Q ss_pred HHhhcCC----CCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChHH
Q 000471 265 LNSVASD----QCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLVV 335 (1472)
Q Consensus 265 ~~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~v 335 (1472)
...-... ........+++.+.+... ..+++-++|+|+++.......+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000111133333222221 23556688999998776556666766665544455655444 44444
Q ss_pred HHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh
Q 000471 336 AER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL 391 (1472)
Q Consensus 336 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 391 (1472)
... .....++++.+++.++....+.+.+...+...+ .+.++.|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHH
Confidence 433 234467899999999988877765532221111 4678889999999654
No 115
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.94 E-value=4.9e-05 Score=89.30 Aligned_cols=181 Identities=15% Similarity=0.110 Sum_probs=100.2
Q ss_pred cCCceeechhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC
Q 000471 184 NEAKVYGREKEKEEIIELLLNDDLR-------GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD 256 (1472)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1472)
...++.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457999999999999887432110 1123456889999999999999999973 22232 22211
Q ss_pred HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC-----------H---hhHHhhcccccC--C
Q 000471 257 VFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN-----------Y---IRWSELRCPFVA--G 320 (1472)
Q Consensus 257 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~ 320 (1472)
..+. ....+ .....+...+...-...+.+|++||++... . ..+..+...+.. .
T Consensus 190 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 11100 111112222222223467899999986531 0 112222221211 1
Q ss_pred CCCcEEEEEcCChHHH-----HhhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh
Q 000471 321 AAGSKIVVTTRNLVVA-----ERMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 321 ~~~s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 390 (1472)
..+.+||.||...+.. +....+..+.+...+.++..++|..++.+..- ....+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 2467788888764322 11122456889999999999999988744321 11112 355667777654
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00021 Score=85.36 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=102.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
..-+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... +. ...+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~-~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KE-IEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hH-HHHHHHHhc-
Confidence 35688999999999999999987322111112233443 3456666666654311 11 223333333
Q ss_pred CeEEEEEeCCCCCCH-hhH-HhhcccccC-CCCCcEEEEEcCCh---------HHHHhhCCCCceeCCCCChHhHHHHHH
Q 000471 293 NKFLLVLDDVWNENY-IRW-SELRCPFVA-GAAGSKIVVTTRNL---------VVAERMGADPVYQLKELSDDDCLCVLT 360 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 360 (1472)
+.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 334888999965431 112 223222221 12345788887643 233334455678899999999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 361 QISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
+++-... .. ..--+++..-|++.++|.|-.+..+...+
T Consensus 286 ~~~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 286 KEIKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8874322 10 01126788999999999998876665433
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00042 Score=83.30 Aligned_cols=184 Identities=12% Similarity=0.090 Sum_probs=107.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcch--hc-----------------cCcce
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRV--QR-----------------HYEIK 246 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~f~~~ 246 (1472)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.++..... .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358999999999999996542 2356678999999999999998763210 00 00011
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcE
Q 000471 247 AWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 325 (1472)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 325 (1472)
.+++.+.. ...++...+.+.+... ..+++-++|+|+++.......+.+...+........
T Consensus 91 ~eidaas~-------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASN-------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccC-------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111100 0111222332222211 235677999999977655555666555554444555
Q ss_pred EEEEc-CChHHHHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 326 IVVTT-RNLVVAER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 326 iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
+|++| +...+... ......+.+.+++.++....+.+.+-..+-.. -.+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 43333322 22335789999999998888877653322111 14667888999999776554443
No 118
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.91 E-value=1.5e-05 Score=65.80 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCccEEeeccCCCccccC-CCCCCCCCccEEecccccccccccccCCCCCcccEeeecCCC
Q 000471 1265 HHLQKIWINYCPNLESFP-EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCP 1324 (1472)
Q Consensus 1265 ~~L~~L~Ls~~~~l~~l~-~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~ 1324 (1472)
|+|++|++++| .++.+| ..+..+++|++|++++|.....-|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666777665 344444 345556667777776666555555566666777777766663
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00028 Score=84.37 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=106.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhcc----Ccc--------------eE
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----YEI--------------KA 247 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~--------------~~ 247 (1472)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++....... -.| .-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 368999999999999986532 2356789999999999999988763211000 000 00
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEE
Q 000471 248 WTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKI 326 (1472)
Q Consensus 248 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 326 (1472)
|+.+... .....+++.++.+.+.. ...+++-++|+|+++.........+...+........+
T Consensus 92 ~~~i~g~-----------------~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGA-----------------SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeecc-----------------ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 1111100 00011122222222111 12356678999999766544455555555544446666
Q ss_pred EEEcCC-hHHHHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh-HHHHH
Q 000471 327 VVTTRN-LVVAER-MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL-AAKTL 396 (1472)
Q Consensus 327 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 396 (1472)
|++|.. ..+... ......+++.++++++....+...+-..+-.. -.+.++.|++.++|.+- |+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 666643 333222 12235789999999999888877653222111 14678889999999764 44433
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00026 Score=89.88 Aligned_cols=191 Identities=14% Similarity=0.079 Sum_probs=110.0
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILN 266 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1472)
++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.......... ..+..-..-+.|..
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~ 83 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAP 83 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHc
Confidence 68999999999999986542 2356789999999999999999764321111000 00000000111100
Q ss_pred h---------hcCCCCCCcccHHHHHHHHH-hhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHH
Q 000471 267 S---------VASDQCKDKDDLNLLQEKLK-KQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVV 335 (1472)
Q Consensus 267 ~---------l~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v 335 (1472)
. +........+++.++.+.+. .-..+++-++|||+++......++.|...+......+.+|++|.+ ..+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0 00000001122222222211 112355668999999888777777777777665556666655543 344
Q ss_pred HHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 336 AERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
...+ ....+|++..++.++..+.+.+.+-...- .. -.+....|++.++|.+..+
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 4332 23467899999999988888776522211 11 1456678899999988543
No 121
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.4e-07 Score=94.33 Aligned_cols=89 Identities=15% Similarity=0.217 Sum_probs=57.3
Q ss_pred CCcceEEecCCCCCCCCh-hhhhccCCCCcceEEeecCCCCCcCC-CCCCCCCccEEEEecCCCcccCchhhhcCCCCcc
Q 000471 1053 SHLRTVKIEDCNALESLP-EAWMHNSNSSLESLKIRNCNSLVSFP-EVALPSQLRTVKIEYCNALISLPEAWMQNSNTSL 1130 (1472)
Q Consensus 1053 ~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 1130 (1472)
+.|+.|++++.. ++.-. ..+.. .+..|+.|.|.++..-..+. ..+...+|+.|+++.|.+++.........+++.|
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs-~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILS-QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHH-HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 346666666532 22111 11222 26778888888774433332 3445568889999999888888777776788888
Q ss_pred ceEeecccCCccc
Q 000471 1131 ESLRIKGCDSLKY 1143 (1472)
Q Consensus 1131 ~~L~l~~c~~l~~ 1143 (1472)
..|+|+.|...+.
T Consensus 263 ~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 263 DELNLSWCFLFTE 275 (419)
T ss_pred hhcCchHhhccch
Confidence 8888888865543
No 122
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.00027 Score=79.47 Aligned_cols=214 Identities=17% Similarity=0.135 Sum_probs=129.9
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 184 NEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
.+..++||+.|+..+.+|+...- .....+-+.|.|-+|.|||.+...++.+......=.+++.+.+..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 35569999999999999987643 2345677899999999999999999986432222234577777766677888888
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHhhhCCC--eEEEEEeCCCCCCHhhHHhhcccccC-CCCCcEEEEEcCCh--H----
Q 000471 264 ILNSVASDQCKDKDDLNLLQEKLKKQLSGN--KFLLVLDDVWNENYIRWSELRCPFVA-GAAGSKIVVTTRNL--V---- 334 (1472)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s~iivTtR~~--~---- 334 (1472)
|...+.........+ .+.++.+.++.... .+|+|+|.++.-....-..+...|.+ .-.++|+|+.---. +
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888773322212222 34455555555433 68999999865321112222222322 23566666543211 1
Q ss_pred HHHhh-----CCCCceeCCCCChHhHHHHHHhhhcCCCC-CCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 335 VAERM-----GADPVYQLKELSDDDCLCVLTQISLGARD-FTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 335 v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
....+ .....+..+|.+.++-.++|..+.-.... ...+..++-.|++++...|.+--|+.+.-+++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 12346788999999999999988743322 12223444455555555566666666666554
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00039 Score=86.11 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=109.7
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh---------------------ccCc
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ---------------------RHYE 244 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 244 (1472)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+....... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368999999999999996542 24568899999999999998887632110 1121
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCC
Q 000471 245 IKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAG 320 (1472)
Q Consensus 245 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 320 (1472)
+..++.+.. ...+.+...+.+. ..+++-++|+|++.......+..+...+...
T Consensus 92 -~~~ld~~~~----------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 -IHELDAASN----------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred -eEEeccccc----------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 111111111 1122222222111 2245668899999887766777777766655
Q ss_pred CCCcEEEEEc-CChHHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHH
Q 000471 321 AAGSKIVVTT-RNLVVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAK 394 (1472)
Q Consensus 321 ~~~s~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 394 (1472)
...+.+|++| +...+.... ....++++.++++++....+.+.+-..+- .. -.+.+..|++.++|..--+.
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i---~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TA---EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 4566666544 444444332 33467899999999999888876633221 11 13567889999999775443
No 124
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.4e-05 Score=60.00 Aligned_cols=39 Identities=36% Similarity=0.511 Sum_probs=22.1
Q ss_pred cceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccc
Q 000471 599 RLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILP 638 (1472)
Q Consensus 599 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP 638 (1472)
+|++|++++| .+..+|..|++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4566666666 56666555666666666666666655443
No 125
>PRK06620 hypothetical protein; Validated
Probab=97.85 E-value=0.00035 Score=74.55 Aligned_cols=139 Identities=12% Similarity=0.022 Sum_probs=82.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
+.+.|||++|+|||+|++.+++... . .++. ..+. . + +.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~----------------~------~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF----------------N------E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh----------------c------h-------hHH-hc
Confidence 5689999999999999999876421 1 1111 0000 0 0 001 12
Q ss_pred eEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-------HHHHhhCCCCceeCCCCChHhHHHHHHhhhcCC
Q 000471 294 KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-------VVAERMGADPVYQLKELSDDDCLCVLTQISLGA 366 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 366 (1472)
.-++++||+........-.+...+. ..|..||+|++.. +....+....+++++++++++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899996432111111211111 3466899998743 233444555689999999999888887776422
Q ss_pred CCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 367 RDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 367 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
...-+ +++..-|++.+.|.--.+.-+-
T Consensus 164 -~l~l~---~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 164 -SVTIS---RQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred -CCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 11111 5788889998888765554433
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00043 Score=85.65 Aligned_cols=197 Identities=13% Similarity=0.149 Sum_probs=110.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-... .+... ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCC----CCCCcccHHHHHHh
Confidence 358999999999999986542 134678999999999999999987421111 00000 01111112222222
Q ss_pred HhhcCC----CCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHH
Q 000471 266 NSVASD----QCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVA 336 (1472)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~ 336 (1472)
.....+ ........+.+.+.+... ..+++-++|+|+++......+..+...+........+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 211110 000112233333222211 12556689999998876666777766665544455555555443 333
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
... .....+++..++.++....+.+.+........ .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 222 23356788899999888877766533211111 356788999999988655443
No 127
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.84 E-value=2.9e-05 Score=87.80 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=63.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC--CCHHHHHHHHHHhhcCCCCCCcccH-----HHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFRISKSILNSVASDQCKDKDDL-----NLLQEK 285 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~ 285 (1472)
-..++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.++..+-....+..... ....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 457899999999999999999986433 37999999999866 7899999998655443332221111 111112
Q ss_pred HHhh-hCCCeEEEEEeCCCC
Q 000471 286 LKKQ-LSGNKFLLVLDDVWN 304 (1472)
Q Consensus 286 l~~~-l~~k~~LlVlDdv~~ 304 (1472)
.+.. -.+++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 358999999999954
No 128
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.81 E-value=0.00071 Score=74.19 Aligned_cols=170 Identities=20% Similarity=0.200 Sum_probs=105.2
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
++.|.+|+.+...+..++...+ ..-+..|.|+|-.|.|||.+.+++.+.. =...+|+++-+.++..-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 4568899999999999886542 1245677999999999999999999853 1246899999999999999999
Q ss_pred HHhhc-CCCCCCc-----ccHHHHHHHHHhh--h--CCCeEEEEEeCCCCCCHhh---HHhhcccccCCCCCcEEEEEcC
Q 000471 265 LNSVA-SDQCKDK-----DDLNLLQEKLKKQ--L--SGNKFLLVLDDVWNENYIR---WSELRCPFVAGAAGSKIVVTTR 331 (1472)
Q Consensus 265 ~~~l~-~~~~~~~-----~~~~~~~~~l~~~--l--~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~~s~iivTtR 331 (1472)
+.+.. .+..... .........++++ . +++.++||||+++.....+ +..+.....-.....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 99985 2222111 1122222333331 1 1568999999996642111 1111110000111233444444
Q ss_pred ChHHHHh---hCCCC--ceeCCCCChHhHHHHHHhh
Q 000471 332 NLVVAER---MGADP--VYQLKELSDDDCLCVLTQI 362 (1472)
Q Consensus 332 ~~~v~~~---~~~~~--~~~l~~L~~~~~~~lf~~~ 362 (1472)
...-... +|... ++....-+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3222222 34433 4567888999999988654
No 129
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.80 E-value=6.4e-05 Score=79.71 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=114.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEE-EEecCCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAW-TCVSEDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i 264 (1472)
.+++|-+..+..+...+... ...+...+|++|.|||+-|.+++...--..-|.+++- .++|..-... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 46899999999999998652 4678899999999999999988874333345555443 2333322111 1110
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHhhh--CCCe-EEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHhh-
Q 000471 265 LNSVASDQCKDKDDLNLLQEKLKKQL--SGNK-FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM- 339 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~~- 339 (1472)
...+.+.+.....+.. ..++ -.+|||+++....+.|..++..+......+|.|+.+.... +....
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0011111111110000 0123 4889999999988999999988877666777665554432 22111
Q ss_pred CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh
Q 000471 340 GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL 391 (1472)
Q Consensus 340 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 391 (1472)
..-.-|..++|.+++...-++..+-..+-..+ .+..+.|++.++|.=.
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHH
Confidence 11235789999999999888888754332222 4667889999988543
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.80 E-value=0.00042 Score=72.78 Aligned_cols=126 Identities=24% Similarity=0.258 Sum_probs=72.3
Q ss_pred CcCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 183 VNEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
+.-.+++|.|.+++.|++=...-- ......-|.+||..|.|||++++++.+...-++ .--|.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 345679999999888875432211 112345677899999999999999987322111 111222211
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC-HhhHHhhcccccCC----CCCcEEEEEcCChHHH
Q 000471 263 SILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN-YIRWSELRCPFVAG----AAGSKIVVTTRNLVVA 336 (1472)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~----~~~s~iivTtR~~~v~ 336 (1472)
+..++..+.+.++. +..||+|.+||+.-+. ...+..++..+..+ ..+..|..||..++..
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22344445555553 3579999999984432 24455565554432 2334445565555543
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.00017 Score=83.60 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=83.4
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++.. .. ....++.+. ... ...++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccH-HHHHHHH
Confidence 468999999999999986432 35678889999999999999998732 11 123344333 111 1111111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCCCCCcEEEEEcCChHH-HHhh-CCC
Q 000471 266 NSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRNLVV-AERM-GAD 342 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtR~~~v-~~~~-~~~ 342 (1472)
...... ..+.+.+-++|+||++.. .......+...+.....++++|+||..... .... ...
T Consensus 89 ~~~~~~----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFAST----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHh----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111000 001234568899999765 222223333334334467789988875431 1111 122
Q ss_pred CceeCCCCChHhHHHHHHh
Q 000471 343 PVYQLKELSDDDCLCVLTQ 361 (1472)
Q Consensus 343 ~~~~l~~L~~~~~~~lf~~ 361 (1472)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3566767777777665543
No 132
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00075 Score=82.52 Aligned_cols=195 Identities=16% Similarity=0.098 Sum_probs=112.0
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++..-...... ...+....+ -+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~----C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSS----CKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchH----HHHHH
Confidence 368999999999999996542 245788999999999999999987421111000 000000000 01111
Q ss_pred Hh-------hcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHHH
Q 000471 266 NS-------VASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVA 336 (1472)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v~ 336 (1472)
.. +.+......+++.++.+.+.. -..+++-++|+|++.......+..+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10 000000011122222222221 12356668999999887666677777766654456666665543 3333
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
... .....++..+++.++..+.+.+.+....-.. -.+.+..|++.++|.+..+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2335689999999999888887764322111 1467788999999988544433
No 133
>CHL00181 cbbX CbbX; Provisional
Probab=97.78 E-value=0.00088 Score=74.99 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=73.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
..+.++|++|+||||+|+.++......+.-...-|+.++.. .+.....+.. .......+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~--------~l~~~~~g~~------~~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD--------DLVGQYIGHT------APKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH--------HHHHHHhccc------hHHHHHHHHHc---c
Confidence 45788999999999999999763211111111224544421 2222222111 11122233332 2
Q ss_pred eEEEEEeCCCCC---------CHhhHHhhcccccCCCCCcEEEEEcCChHHHHhh--------CCCCceeCCCCChHhHH
Q 000471 294 KFLLVLDDVWNE---------NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERM--------GADPVYQLKELSDDDCL 356 (1472)
Q Consensus 294 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 356 (1472)
.-+|++|++... .......+...+.....+.+||.++....+.... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 248999999642 1111223333343444556777777644432211 12346889999999999
Q ss_pred HHHHhhhcC
Q 000471 357 CVLTQISLG 365 (1472)
Q Consensus 357 ~lf~~~a~~ 365 (1472)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998887643
No 134
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.77 E-value=0.00057 Score=74.34 Aligned_cols=196 Identities=17% Similarity=0.118 Sum_probs=114.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc----cCcceEEEEecCCCCHHHHHHHHHHhh
Q 000471 193 KEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFRISKSILNSV 268 (1472)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1472)
+.++++.+++..+ ......-+.|||..|+|||++++++....-... .--.++.|.....++...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3456666666544 345667799999999999999999986321111 111466788888899999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHhhhCC-CeEEEEEeCCCCC------CHhhHHhhcccccCCCCCcEEEEEcCChHHHHhh--
Q 000471 269 ASDQCKDKDDLNLLQEKLKKQLSG-NKFLLVLDDVWNE------NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERM-- 339 (1472)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~-- 339 (1472)
+.+.. ...........+...++. +--+||+|.+.+. .+.+.-.....+...-.=+-|.+-|+...-+-..
T Consensus 121 gaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 121 GAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred CcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 98765 344555555555555543 3458899999663 1111111222222222334455555532221111
Q ss_pred ---CCCCceeCCCCChHhH-HHHHHhhhc--CCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 340 ---GADPVYQLKELSDDDC-LCVLTQISL--GARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 340 ---~~~~~~~l~~L~~~~~-~~lf~~~a~--~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
+-..++.+.....++- ..|+..... .-..+ .+-...++++.|...++|+.=-+
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHH
Confidence 1123456666666544 445433321 11111 12234789999999999987443
No 135
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.74 E-value=6.5e-06 Score=98.79 Aligned_cols=100 Identities=25% Similarity=0.358 Sum_probs=75.0
Q ss_pred hccCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCce
Q 000471 594 LNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHH 673 (1472)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 673 (1472)
+..++.|..|++.+| .+..+...+..+.+|++|+|++|.|+.+ ..+..|..|+.|++++| .+..++ ++..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 567788899999888 8888865588889999999999988888 45778888999999884 455554 3666888888
Q ss_pred eecCCCCCcccCCCc-cccccccccc
Q 000471 674 LRNSTANSLKEMPKG-FGKLTSLLTL 698 (1472)
Q Consensus 674 L~l~~~~~~~~~p~~-i~~L~~L~~L 698 (1472)
+++++|. +..+... ...+.+|+.+
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHH
Confidence 8888887 5555432 3555555554
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.74 E-value=0.00058 Score=81.72 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=92.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccC--cceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHY--EIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
...+.|+|+.|+|||+||+++++.. .... ..++++++ .++..++...+... ..+... +.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~~----~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEFK----EKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHHH----HHH
Confidence 4568899999999999999999843 2222 23455543 33344455444321 122222 223
Q ss_pred CCCeEEEEEeCCCCCCHhh-H-HhhcccccC-CCCCcEEEEEcCCh-H--------HHHhhCCCCceeCCCCChHhHHHH
Q 000471 291 SGNKFLLVLDDVWNENYIR-W-SELRCPFVA-GAAGSKIVVTTRNL-V--------VAERMGADPVYQLKELSDDDCLCV 358 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~~s~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l 358 (1472)
++ .-+|||||++.....+ + +.+...+.. ...|..||+|+... . +...+....++.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 2388999997542111 1 222222211 12345678877642 2 222223334688999999999999
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 359 LTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 359 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
+.+.+....- .- -+++...|++.+.|..-.+.-
T Consensus 277 l~~~~~~~~~-~l---~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 277 LQKKAEEEGL-EL---PDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHH
Confidence 9988744221 11 157788899999988765443
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.73 E-value=0.00042 Score=77.27 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=81.2
Q ss_pred ceeechhHHHHHHHHHhc---------CCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCH
Q 000471 187 KVYGREKEKEEIIELLLN---------DDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV 257 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1472)
.++|.+..+++|.+.... ......+...-+.++|++|+||||+|+.+++.......-....++.+...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478988877766543211 10011234556789999999999999999863211111111123333221
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC--------HhhHHhhcccccCCCCCcEEEEE
Q 000471 258 FRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN--------YIRWSELRCPFVAGAAGSKIVVT 329 (1472)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~~s~iivT 329 (1472)
.+ .....+ .........+.+. . .-+|++|++.... ......+...+........+|++
T Consensus 84 -~l----~~~~~g------~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -DL----VGEYIG------HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -Hh----hhhhcc------chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11 111111 1112222333322 1 2488999996521 11223343333333333455666
Q ss_pred cCChHHHH------hh--CCCCceeCCCCChHhHHHHHHhhhc
Q 000471 330 TRNLVVAE------RM--GADPVYQLKELSDDDCLCVLTQISL 364 (1472)
Q Consensus 330 tR~~~v~~------~~--~~~~~~~l~~L~~~~~~~lf~~~a~ 364 (1472)
+...+... .. .....+.+++++.+|-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54433211 01 1124578899999999999887764
No 138
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00069 Score=83.80 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=108.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++..-.....+ ...+..-..-++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 369999999999999986542 245678999999999999998876321111000 00000001111110
Q ss_pred Hh-------hcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChHHH
Q 000471 266 NS-------VASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLVVA 336 (1472)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~v~ 336 (1472)
.. +.+......+++.++.+.+... ..+++-++|+|+++.........+...+........+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000112222333222211 23456689999998776556666666665444456666544 444444
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh-hHHHHH
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP-LAAKTL 396 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 396 (1472)
... .....+++.+++.++....+...+-..+-..+ .+.+..|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 332 23356789999999988877765532211111 466788899999866 344444
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68 E-value=0.00013 Score=84.12 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=73.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.++++.+...+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.+....+....+....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 35788999999999999653 3578899999999999999987544445678889999998888766654321
Q ss_pred HhhcCCCCCCcccH-HHHHHHHHhhh--CCCeEEEEEeCCCCCCHhh
Q 000471 266 NSVASDQCKDKDDL-NLLQEKLKKQL--SGNKFLLVLDDVWNENYIR 309 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~-~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~ 309 (1472)
.... ...-. ....+.+.+.. .++++++|+|++...+...
T Consensus 247 ----P~~v-gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k 288 (459)
T PRK11331 247 ----PNGV-GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK 288 (459)
T ss_pred ----CCCC-CeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH
Confidence 1100 00000 01112222222 2468999999998765443
No 140
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.68 E-value=0.0002 Score=84.32 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=97.2
Q ss_pred CCceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV 257 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1472)
..++.|+++.++++.+.+...-. -+-..++-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 35799999999999887632100 01234567889999999999999999873 2222 232221
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC-----------HhhHHhhcccc---cC--CC
Q 000471 258 FRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN-----------YIRWSELRCPF---VA--GA 321 (1472)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~~ 321 (1472)
.. +.....+ .....+...+...-...+.+|+|||++... ......+...+ .. ..
T Consensus 199 ~~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SE----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HH----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11 1111111 111112222222223467899999996531 11111122111 11 12
Q ss_pred CCcEEEEEcCChHHHHh-h----CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCC
Q 000471 322 AGSKIVVTTRNLVVAER-M----GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGL 389 (1472)
Q Consensus 322 ~~s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl 389 (1472)
.+.+||.||...+.... + .-+..+.+...+.++-.++|+.+..+.. .....+ ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~-~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN-LADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC-CCCcCC----HHHHHHHcCCC
Confidence 35678888876542221 1 1235688999999999999998764322 111122 34556666664
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.67 E-value=0.00042 Score=89.41 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=95.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcch---hc-cCcceEE-EEecCCCCHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRV---QR-HYEIKAW-TCVSEDFDVFRI 260 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~w-v~~~~~~~~~~~ 260 (1472)
..++||+.++.++++.|.... ..-+.++|++|+||||+|+.+++.... .. -.+..+| ++.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 358999999999999986542 234569999999999999999873210 10 1122233 22211
Q ss_pred HHHHHHhhcCCCCCCcccH-HHHHHHHHhhh-CCCeEEEEEeCCCCCC-------HhhHHhhcccccCCCCCcEEEEEcC
Q 000471 261 SKSILNSVASDQCKDKDDL-NLLQEKLKKQL-SGNKFLLVLDDVWNEN-------YIRWSELRCPFVAGAAGSKIVVTTR 331 (1472)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~s~iivTtR 331 (1472)
+..... ...+. +.+...+.+.- .+++.+|++|++.... ..+-..+..+.... ..-++|-||.
T Consensus 254 -------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATT 324 (852)
T ss_pred -------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecC
Confidence 000000 11111 22222232222 2468999999985531 11111222222222 2356666666
Q ss_pred ChHHHHhh-------CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCC
Q 000471 332 NLVVAERM-------GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGL 389 (1472)
Q Consensus 332 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl 389 (1472)
..+..... ..-+++.+++++.++..++++...-.-.....-.--.+....+++.+.+.
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 54332211 12257899999999999997554421111000001134556666666554
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0016 Score=80.15 Aligned_cols=193 Identities=16% Similarity=0.126 Sum_probs=108.2
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+....-....-+ ...++.-..-+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 369999999999999997642 245677899999999999998875311110000 00111111111111
Q ss_pred Hhhc-------CCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEc-CChHHH
Q 000471 266 NSVA-------SDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLVVA 336 (1472)
Q Consensus 266 ~~l~-------~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-R~~~v~ 336 (1472)
.... .......+.+.++.+.+... ..+++-++|+|++.......+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1100 00000111222222222211 23567788999998776666777766555444455555544 433333
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHH
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAK 394 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 394 (1472)
... .....++..+++.++....+...+-..+-..+ .+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 222 22356788999999988888776632221111 4667888999998776443
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.65 E-value=0.00035 Score=89.67 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=83.8
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc---hhccC-cceEEEEecCCCCHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHY-EIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~ 262 (1472)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +...+ +..+|. + +...+
T Consensus 183 ~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l-- 249 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL-- 249 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH--
Confidence 58999999999999986542 23456999999999999999987321 11111 233442 1 11111
Q ss_pred HHHHhhcCCCCCCcccHHH-HHHHHHhhhCCCeEEEEEeCCCCCC--------HhhHHhhcccccCCCCCcEEEEEcCCh
Q 000471 263 SILNSVASDQCKDKDDLNL-LQEKLKKQLSGNKFLLVLDDVWNEN--------YIRWSELRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~~s~iivTtR~~ 333 (1472)
.. +.. ...+.++ +...+.+.-..++.+|++|++.... ..+-..+..+....+ .-++|-+|...
T Consensus 250 --~a---~~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~ 321 (731)
T TIGR02639 250 --LA---GTK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYE 321 (731)
T ss_pred --hh---hcc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHH
Confidence 10 000 0112222 2222222223467899999986321 011112222222211 23555555543
Q ss_pred HHHHhh-------CCCCceeCCCCChHhHHHHHHhhh
Q 000471 334 VVAERM-------GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 334 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
+..... ..-+.+.+++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 221111 122468999999999999998654
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0013 Score=78.45 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=88.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
..-+.|+|+.|+|||+||+++++.. ......+++++ ...+...+...+... .. ..+++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~------~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG------EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc------hH----HHHHHHcc-
Confidence 4568899999999999999999843 22223344554 233444555444321 11 22333333
Q ss_pred CeEEEEEeCCCCCCHhhH--HhhcccccC-CCCCcEEEEEcCCh---------HHHHhhCCCCceeCCCCChHhHHHHHH
Q 000471 293 NKFLLVLDDVWNENYIRW--SELRCPFVA-GAAGSKIVVTTRNL---------VVAERMGADPVYQLKELSDDDCLCVLT 360 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 360 (1472)
+.-+|++||+.......| +.+...+.. ...|..||+||... .+...+....++++.+++.++-.+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 344888899865422111 222222111 01355788888642 222333444678999999999999998
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhCCCh
Q 000471 361 QISLGARDFTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 390 (1472)
+++-... ..-+ .++..-|++.+.|.-
T Consensus 282 ~k~~~~~-~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS-IRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCH
Confidence 8874322 1111 466666777776544
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.0006 Score=81.47 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=93.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhcc-Cc-ceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRH-YE-IKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
..-+.|+|++|+|||+||+++++. .... .. .++|++. .++..++...+... ..+. +++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 445899999999999999999984 3222 22 3456643 34555555555321 1222 22233
Q ss_pred CCCeEEEEEeCCCCCCH-hhH-HhhcccccC-CCCCcEEEEEcC-ChHH--------HHhhCCCCceeCCCCChHhHHHH
Q 000471 291 SGNKFLLVLDDVWNENY-IRW-SELRCPFVA-GAAGSKIVVTTR-NLVV--------AERMGADPVYQLKELSDDDCLCV 358 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~~s~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~l 358 (1472)
..+.-+||+||+..... ..+ +.+...+.. ...|..||+||. .+.- ...+....++++++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 33455899999974310 111 122222111 113457888875 3321 12233445778999999999999
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 359 LTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 359 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
+.+.+....- .-+ .+++..|++.+.|.--.+.-
T Consensus 272 L~~~~~~~~~-~l~---~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 272 ARKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHhcCC-CCC---HHHHHHHHhccccCHHHHHH
Confidence 9888743221 111 57788899988887655443
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.61 E-value=0.0012 Score=74.14 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=71.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCe
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNK 294 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 294 (1472)
-+.++|++|+||||+|+.++......+.....-|+.++. . +++..+.+.. .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---cC
Confidence 578999999999999987775321111111123444442 1 2222222211 11222233332 23
Q ss_pred EEEEEeCCCCC---------CHhhHHhhcccccCCCCCcEEEEEcCChHHHHhhC--------CCCceeCCCCChHhHHH
Q 000471 295 FLLVLDDVWNE---------NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMG--------ADPVYQLKELSDDDCLC 357 (1472)
Q Consensus 295 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 357 (1472)
-+|+||++... ....+..+...+.....+.+||.++.......... ....+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999632 11223344444444445667777765433222211 13468899999999999
Q ss_pred HHHhhhc
Q 000471 358 VLTQISL 364 (1472)
Q Consensus 358 lf~~~a~ 364 (1472)
++...+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9888763
No 147
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=1.7e-05 Score=95.14 Aligned_cols=175 Identities=18% Similarity=0.127 Sum_probs=80.5
Q ss_pred cCCCCCccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCCCCCCCcce
Q 000471 1261 LHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPEDGFPTNLQS 1340 (1472)
Q Consensus 1261 l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~ 1340 (1472)
+..+.+|+.|++.+|. +..+......+++|++|++++|.+... ..+..++.|+.|++++| .+..++....+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N-~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGN-LISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccC-cchhccCCccchhhhc
Confidence 4445555555555532 222222233445555555555443322 23444444555555555 3444444444555555
Q ss_pred eEeccccCCCCCCccccccccccceeeeccCCCCCC----------------------CCCCCCcc--ccceeccCCCCc
Q 000471 1341 LEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLV----------------------SPPPFPAS--LTNLWISDMPDL 1396 (1472)
Q Consensus 1341 L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----------------------~~~~~~~~--L~~L~l~~~~~l 1396 (1472)
+++++|.+...-+.. +..+.+|+.+++.+|.+... ........ |+.+++++|+ +
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~-i 244 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR-I 244 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc-c
Confidence 555555554433211 24455555555555433222 22122222 5666666663 3
Q ss_pred CcccccCCCCCcCceeeccCCCCCCCCCCCCCccccceecccCCcc
Q 000471 1397 ESISSIGENLTSLETLRLFNCPKLKYFPEQGLPKSLSRLSIHNCPL 1442 (1472)
Q Consensus 1397 ~~i~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~sL~~L~l~~c~~ 1442 (1472)
..++..+..++.+..|++.+| .+..+........+..+....++.
T Consensus 245 ~~~~~~~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 245 SRSPEGLENLKNLPVLDLSSN-RISNLEGLERLPKLSELWLNDNKL 289 (414)
T ss_pred ccccccccccccccccchhhc-cccccccccccchHHHhccCcchh
Confidence 333234456666777777655 333332222333444445555543
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.59 E-value=0.00077 Score=81.65 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=93.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCc--ceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYE--IKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
..-+.|+|+.|+|||+||+++++. ....+. .+++++. ..+..++...+... ..+. +.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~----~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN------TMEE----FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHHH----HHHHH
Confidence 456889999999999999999984 333332 2445543 23334444444321 1222 22333
Q ss_pred CCCeEEEEEeCCCCCCHhh--HHhhcccccC-CCCCcEEEEEcCChH---------HHHhhCCCCceeCCCCChHhHHHH
Q 000471 291 SGNKFLLVLDDVWNENYIR--WSELRCPFVA-GAAGSKIVVTTRNLV---------VAERMGADPVYQLKELSDDDCLCV 358 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 358 (1472)
+ +.-+|||||++...... .+.+...+.. ...|..||+||.... +...+....++++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 23489999996532111 1222221111 113456888776531 223334446789999999999999
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 359 LTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 359 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
+.+.+.... ..- -+++...|++.++|..-.+.-
T Consensus 289 l~~~~~~~~-~~l---~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 289 LKKKAEEEG-IDL---PDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHHHcC-CCC---CHHHHHHHHcCcCCCHHHHHH
Confidence 999875322 111 157788899999988765443
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=6e-05 Score=56.57 Aligned_cols=40 Identities=33% Similarity=0.490 Sum_probs=30.2
Q ss_pred CcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhh
Q 000471 622 KHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLC 662 (1472)
Q Consensus 622 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp 662 (1472)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4788999999999988888888999999998885 344443
No 150
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.57 E-value=1.1e-05 Score=86.80 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=54.1
Q ss_pred HHHHhccCCcceEEEecCCCCCcc-----CCcccCCCCcCcEEecCCc---c-ccccchhh-------hhcccccEEecC
Q 000471 590 LQRLLNHLPRLRVFSLRGCGNIFN-----LPNEIGNLKHLRCLNLSRT---R-IQILPESI-------NSLYNLHTILLE 653 (1472)
Q Consensus 590 ~~~~~~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~L~~~---~-i~~lP~~i-------~~L~~L~~L~L~ 653 (1472)
.......+..+..++|+|| .++. +-..+.+.++||.-+++.- + ..++|+.+ -..++|++||||
T Consensus 22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3344667788999999998 5532 3345666778888888763 1 22555543 234467777777
Q ss_pred CCcch----hhhhhhhcccCCCceeecCCCC
Q 000471 654 DCHQL----KKLCKDMGNLRKLHHLRNSTAN 680 (1472)
Q Consensus 654 ~~~~l----~~lp~~i~~L~~L~~L~l~~~~ 680 (1472)
.|-.- ..+-.-+.....|+||++.+|.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 65332 2222234556667777776665
No 151
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.55 E-value=9.3e-06 Score=87.31 Aligned_cols=223 Identities=16% Similarity=0.074 Sum_probs=142.8
Q ss_pred CcccceEEeccccccccccch-----hccCCcchhhhccccccc---cCc-------cccCCCCCccEEeeccCCCcccc
Q 000471 1217 PQALKYLRVEDCSKLESLAER-----LDNTSLEEITISVLENLK---SLP-------ADLHNLHHLQKIWINYCPNLESF 1281 (1472)
Q Consensus 1217 ~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~~~~~~---~~~-------~~l~~l~~L~~L~Ls~~~~l~~l 1281 (1472)
..+++.++|+++..-+.-... ...++|+..++++-.-.. .+| ..+..+|+|++|+||+|.+-...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 357899999997754332221 123677777777643222 222 34567889999999998655443
Q ss_pred CCC----CCCCCCccEEeccccccccc-------------ccccCCCCCcccEeeecCCCCCccCCCC------CCCCCc
Q 000471 1282 PEE----GLPSTKLTELTIYDCENLKA-------------LPNCMHNLTSLLILEIRGCPSVVSFPED------GFPTNL 1338 (1472)
Q Consensus 1282 ~~~----~~~l~~L~~L~Ls~c~~l~~-------------lp~~l~~l~~L~~L~L~~n~~l~~~p~~------~~~~~L 1338 (1472)
+.. +..+..|++|+|.+|..-.. ...-..+-+.|+++..+.| .+.+.+.. ...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcccc
Confidence 332 23467899999999864211 1122345678999999888 45554432 345889
Q ss_pred ceeEeccccCCCCC---CccccccccccceeeeccCCCCCC-------CCCCCCccccceeccCCCCcCc-----ccccC
Q 000471 1339 QSLEVRGLKISKPL---PEWGFNRFTSLRRFTICGGCPDLV-------SPPPFPASLTNLWISDMPDLES-----ISSIG 1403 (1472)
Q Consensus 1339 ~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~-------~~~~~~~~L~~L~l~~~~~l~~-----i~~~~ 1403 (1472)
+++.++.|.+.... ....|..++.|+.|||..|-.+.. .++. .+.|+.|.+++|. ++. +...+
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~dcl-l~~~Ga~a~~~al 265 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGDCL-LENEGAIAFVDAL 265 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccccc-cccccHHHHHHHH
Confidence 99999999886322 223578899999999988754422 2222 3479999999994 332 22222
Q ss_pred -CCCCcCceeeccCCCCCCCCC----C-CCCccccceecccCCcc
Q 000471 1404 -ENLTSLETLRLFNCPKLKYFP----E-QGLPKSLSRLSIHNCPL 1442 (1472)
Q Consensus 1404 -~~l~~L~~L~l~~~~~l~~lp----~-~~~~~sL~~L~l~~c~~ 1442 (1472)
...|+|+.|.+.+|..-..-. . ..-.+.|..|++++|..
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 568999999999984322110 0 01256899999999987
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0016 Score=74.26 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=65.7
Q ss_pred CCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCC
Q 000471 292 GNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER-MGADPVYQLKELSDDDCLCVLTQISLGARDF 369 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 369 (1472)
+++-++|+|+++.........+...+.....++.+|+||.+.. +... ......+.+.+++.+++.+.+.... +..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 3444557799988877777777766665556778888877754 2222 2233568999999999998887653 111
Q ss_pred CCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 370 TRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
. .+.+..++..++|.|..+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 344667889999999766554
No 153
>PF14516 AAA_35: AAA-like domain
Probab=97.53 E-value=0.0047 Score=71.19 Aligned_cols=203 Identities=13% Similarity=0.108 Sum_probs=118.1
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC-----CCHH
Q 000471 184 NEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-----FDVF 258 (1472)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 258 (1472)
+.+..|.|...-+++.+.+.+. ...+.|.|+-.+|||+|..++.+..+. ..| .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 3445778986777777777553 258999999999999999999874332 233 3557776542 2455
Q ss_pred HHHHHHHHhhcCCCCC----------CcccHHHHHHHHHhhh---CCCeEEEEEeCCCCCCH-----hh-HHhhcccccC
Q 000471 259 RISKSILNSVASDQCK----------DKDDLNLLQEKLKKQL---SGNKFLLVLDDVWNENY-----IR-WSELRCPFVA 319 (1472)
Q Consensus 259 ~~~~~i~~~l~~~~~~----------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~-----~~-~~~l~~~l~~ 319 (1472)
+.++.++..+...-.. ...........+.+++ .+++.+|+||+|+..-. .+ +..++.....
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 5555555544332110 0111223333444432 26899999999965321 11 1111111111
Q ss_pred C-----CCCcEEEEEcCCh-HHHHh-----hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCC
Q 000471 320 G-----AAGSKIVVTTRNL-VVAER-----MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGG 388 (1472)
Q Consensus 320 ~-----~~~s~iivTtR~~-~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 388 (1472)
. ...-++++....+ ..... ......++|.+++.+|...|..++-..-. .+..++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCC
Confidence 0 1111222222111 11111 11234688999999999999887642211 2338899999999
Q ss_pred ChhHHHHHHhhhcCC
Q 000471 389 LPLAAKTLGGLLRGR 403 (1472)
Q Consensus 389 lPLal~~~~~~L~~~ 403 (1472)
+|.-+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0019 Score=73.20 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=111.5
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcch-------------hccCcceEEEEecC
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRV-------------QRHYEIKAWTCVSE 253 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~ 253 (1472)
+++|.+..++.+.+.+..+. -.....++|+.|+||+++|..+++..-. ........|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 58999999999999996542 2468899999999999999877653111 11122234442210
Q ss_pred CCCHHHHHHHHHHhhcCC-CCCCcccHHHHHHHHHhhh-----CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEE
Q 000471 254 DFDVFRISKSILNSVASD-QCKDKDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIV 327 (1472)
Q Consensus 254 ~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ii 327 (1472)
..+-..+-..-++..+.. .......++++. .+.+.+ .+++-++|+|+++.........+...+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 000000001111111100 000111223322 233332 3567799999998877666666666665444 44555
Q ss_pred EEcCCh-HHHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 328 VTTRNL-VVAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 328 vTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
++|.+. .+.... .....+.+.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 555443 333322 3346789999999999999987642111 01123678899999997665433
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=4.3e-05 Score=79.96 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=60.4
Q ss_pred CCcchhhhccccccc--cCccccCCCCCccEEeeccCCCccccCCCCCCCCCccEEeccccccc-ccccccCCCCCcccE
Q 000471 1241 TSLEEITISVLENLK--SLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENL-KALPNCMHNLTSLLI 1317 (1472)
Q Consensus 1241 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~ 1317 (1472)
+.++++|+.+|.+.. .+...+.++|.|+.|+|+.|+....|...-.+..+|++|.|.|-... ...-..+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 778888998887765 44556788999999999998876655443367789999999774321 122234567888888
Q ss_pred eeecCC
Q 000471 1318 LEIRGC 1323 (1472)
Q Consensus 1318 L~L~~n 1323 (1472)
|+++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 888887
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.45 E-value=0.0018 Score=78.20 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=93.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccC--cceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHY--EIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLS 291 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1472)
..+.|+|..|+|||.|++++++. ....+ ..+++++ ..++..++...+... ..+ .+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~------~~~----~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG------KGD----SFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc------cHH----HHHHHhh
Confidence 45899999999999999999984 22222 2334553 334444444443221 112 2233333
Q ss_pred CCeEEEEEeCCCCCCHh-hHH-hhcccccC-CCCCcEEEEEcCCh---------HHHHhhCCCCceeCCCCChHhHHHHH
Q 000471 292 GNKFLLVLDDVWNENYI-RWS-ELRCPFVA-GAAGSKIVVTTRNL---------VVAERMGADPVYQLKELSDDDCLCVL 359 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 359 (1472)
+ -=+|||||+...... .|. .+...+.. ...|..|||||+.. .+...+...-+++|.+.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 347889999764321 222 22222211 12356688888753 23344455667899999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHH
Q 000471 360 TQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKT 395 (1472)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 395 (1472)
.+++.... ...+ .++++-|++.+.+..-.+.-
T Consensus 456 ~kka~~r~-l~l~---~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 456 RKKAVQEQ-LNAP---PEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHHHhcC-CCCC---HHHHHHHHHhccCCHHHHHH
Confidence 98874432 1111 57778888887776544433
No 157
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=5.7e-06 Score=96.46 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=77.5
Q ss_pred CccEEeeccCCCccccCCCCCCCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCC-CCCCCcceeEec
Q 000471 1266 HLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPED-GFPTNLQSLEVR 1344 (1472)
Q Consensus 1266 ~L~~L~Ls~~~~l~~l~~~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~-~~~~~L~~L~l~ 1344 (1472)
.|...+.++| .+..+..++.-++.|+.|+|++|..... ..+..++.|++|||+.| .++.+|.. ..-..|..|.++
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccccccchhhhhheeeeec
Confidence 4555555553 3444444555556778888888665433 25677778888888877 46666655 122347888888
Q ss_pred cccCCCCCCccccccccccceeeeccCCCCCCCCCCC---CccccceeccCCC
Q 000471 1345 GLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPPF---PASLTNLWISDMP 1394 (1472)
Q Consensus 1345 ~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~---~~~L~~L~l~~~~ 1394 (1472)
||.+.... ++.+|.+|+.||++.|++..-+--.+ +..|..|.|.+||
T Consensus 241 nN~l~tL~---gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLR---GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhh---hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 88776543 56777888888888876654333332 4566777777776
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.39 E-value=0.00072 Score=87.90 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=85.1
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc---hhccC-cceEEEEecCCCCHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHY-EIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~ 262 (1472)
.++||++++++++++|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l-- 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL-- 246 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH--
Confidence 48999999999999996532 23456999999999999999987421 11111 234442 1 11111
Q ss_pred HHHHhhcCCCCCCcccHH-HHHHHHHhhhCCCeEEEEEeCCCCCC-------HhhHHhhcccccCCCCCcEEEEEcCChH
Q 000471 263 SILNSVASDQCKDKDDLN-LLQEKLKKQLSGNKFLLVLDDVWNEN-------YIRWSELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
+.+... ..+.+ .+...+.+.-..++.+|++|++...- ..+...+..+.... ..-++|.+|...+
T Consensus 247 -----~ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 247 -----LAGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred -----hccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 111111 11222 23333333334568999999994210 01112222222221 2346666666655
Q ss_pred HHHhh-------CCCCceeCCCCChHhHHHHHHhh
Q 000471 335 VAERM-------GADPVYQLKELSDDDCLCVLTQI 362 (1472)
Q Consensus 335 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 362 (1472)
..... .....+.+...+.++...+++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 12245788888989888887653
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0014 Score=82.74 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=86.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh---cc-CcceEEEEecCCCCHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ---RH-YEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~~ 262 (1472)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.+++..... .. .++.+|.. +..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~---- 251 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG---- 251 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----
Confidence 48999999999999996632 2334689999999999999998632111 11 13344421 111
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHHHhhh-CCCeEEEEEeCCCCC--------CHhhHHhhcccccCCCCCcEEEEEcCCh
Q 000471 263 SILNSVASDQCKDKDDLNLLQEKLKKQL-SGNKFLLVLDDVWNE--------NYIRWSELRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~~s~iivTtR~~ 333 (1472)
.++ .+.. ...+.+.....+.+.+ +.++.+|++|++... ...+...+..++... ..-+||-+|...
T Consensus 252 ~ll---aG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 252 SLL---AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred HHh---cccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 111 1111 1112222222222222 346789999999532 122333333333322 234556566554
Q ss_pred HHHHhh-------CCCCceeCCCCChHhHHHHHHhhh
Q 000471 334 VVAERM-------GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 334 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
+..... ..-+.+.+++.+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 432221 122468999999999999988654
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.36 E-value=0.0017 Score=77.60 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=90.1
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc---cCcceEEEEecCCC
Q 000471 186 AKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR---HYEIKAWTCVSEDF 255 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 255 (1472)
.++.|.+..++++.+.+...-. -+-...+-+.++|++|.|||++|+++++...... .+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4588899999998887642100 0112345688999999999999999998432110 1123344444332
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCH-------hh-----HHhhcccccCC--
Q 000471 256 DVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENY-------IR-----WSELRCPFVAG-- 320 (1472)
Q Consensus 256 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------~~-----~~~l~~~l~~~-- 320 (1472)
+++....+. .......+.+..++. -.+++++|+||+++..-. .+ ...+...+...
T Consensus 261 -------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 -------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred -------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 111111110 011122222233322 235789999999964210 01 11222222211
Q ss_pred CCCcEEEEEcCChHHHHh--h---CCCCceeCCCCChHhHHHHHHhhh
Q 000471 321 AAGSKIVVTTRNLVVAER--M---GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 321 ~~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
..+..||.||...+.... . .-+..+++...+.++..++|+.+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 234456666665543221 1 223458999999999999999876
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.36 E-value=0.00037 Score=68.87 Aligned_cols=70 Identities=23% Similarity=0.134 Sum_probs=41.0
Q ss_pred EEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC-Ce
Q 000471 216 ISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG-NK 294 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~ 294 (1472)
|.|+|++|+||||+|+.+++.. ..+ .+.++.+.-.+. ........+...+.+.-+. ++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---cccccccccccc----------------cccccccccccccccccccccc
Confidence 5789999999999999999843 211 233333222100 0222333344444443333 48
Q ss_pred EEEEEeCCCCCC
Q 000471 295 FLLVLDDVWNEN 306 (1472)
Q Consensus 295 ~LlVlDdv~~~~ 306 (1472)
.+|++||++...
T Consensus 60 ~vl~iDe~d~l~ 71 (132)
T PF00004_consen 60 CVLFIDEIDKLF 71 (132)
T ss_dssp EEEEEETGGGTS
T ss_pred eeeeeccchhcc
Confidence 999999996653
No 162
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0035 Score=74.24 Aligned_cols=107 Identities=27% Similarity=0.334 Sum_probs=67.5
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
+.+-+|.++-+++|++++.-..-.+..+.++++.+|++|||||++|+.|+.. ..+.| +-+++++-.|+.++-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhcccc
Confidence 4567899999999999997655445667899999999999999999999872 33333 234566655554432111
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCC
Q 000471 265 LNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWN 304 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 304 (1472)
-..++ .-...+.+.+++. +..+=|+.+|.|+.
T Consensus 485 RTYVG-------AMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 RTYVG-------AMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred eeeec-------cCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 01111 1112233333332 34566888999854
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.0015 Score=80.09 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC---CCCHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE---DFDVFRIS 261 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~ 261 (1472)
-.+++|-++.++++..|+..... .....+++.|+|++|+||||+++.++... .++..-|+.-.. ..+...+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~~~~~~ 157 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKNDHKVT 157 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhcccccccccc
Confidence 45799999999999999865432 22334689999999999999999998732 233333422110 00111111
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHh---h----hCCCeEEEEEeCCCCCC---HhhHHhhcc-cccCCCCCcEEEEEc
Q 000471 262 KSILNSVASDQCKDKDDLNLLQEKLKK---Q----LSGNKFLLVLDDVWNEN---YIRWSELRC-PFVAGAAGSKIVVTT 330 (1472)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~---~----l~~k~~LlVlDdv~~~~---~~~~~~l~~-~l~~~~~~s~iivTt 330 (1472)
..+..++..... .......+...... . ..+++.+|++|++.... ...+..+.. .+...+.-.-|+|||
T Consensus 158 ~s~~~~~~~~~s-~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 158 LSLESCFSNFQS-QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred hhhhhccccccc-hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 122222211110 11122222222221 1 13567899999994421 112333333 222222223455666
Q ss_pred CChH---------HH-------HhhC--CCCceeCCCCChHhHHHHHHhhhcCCCCCCCCc---cHHHHHHHHHHHhCCC
Q 000471 331 RNLV---------VA-------ERMG--ADPVYQLKELSDDDCLCVLTQISLGARDFTRHL---SLKEVGEQIVIKCGGL 389 (1472)
Q Consensus 331 R~~~---------v~-------~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~---~~~~~~~~i~~~~~gl 389 (1472)
.... .. .... ....+...++...+-.+.+.+.+-......... .-.+....|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 3211 00 0111 123578899999986666655543211100000 0135667777778776
Q ss_pred hhHHHHHHhh
Q 000471 390 PLAAKTLGGL 399 (1472)
Q Consensus 390 PLal~~~~~~ 399 (1472)
-..+...-..
T Consensus 317 iRsAIn~LQf 326 (637)
T TIGR00602 317 IRSAINSLQF 326 (637)
T ss_pred HHHHHHHHHH
Confidence 5544433333
No 164
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=1.2e-05 Score=93.73 Aligned_cols=177 Identities=21% Similarity=0.195 Sum_probs=118.0
Q ss_pred ccccCCCCCccEEeeccCCCccccCCCCCCC-CCccEEecccccccccc----cccCC------CCCcccEeeecCCCCC
Q 000471 1258 PADLHNLHHLQKIWINYCPNLESFPEEGLPS-TKLTELTIYDCENLKAL----PNCMH------NLTSLLILEIRGCPSV 1326 (1472)
Q Consensus 1258 ~~~l~~l~~L~~L~Ls~~~~l~~l~~~~~~l-~~L~~L~Ls~c~~l~~l----p~~l~------~l~~L~~L~L~~n~~l 1326 (1472)
|-.+..|.+|+.|.+.+|+..+. ..+..+ ..|++|...+ .+..+ ....+ -...|...+.+.| .+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYN-RL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchh-hH
Confidence 55666788888888888876551 122222 3455554322 11111 01111 1235667777777 45
Q ss_pred ccCCCC-CCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCC-CCccccceeccCCCCcCcccccCC
Q 000471 1327 VSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPP-FPASLTNLWISDMPDLESISSIGE 1404 (1472)
Q Consensus 1327 ~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~ 1404 (1472)
+..... ..++.|+.|+|++|++...- .+..|+.|++|||+.||.....-.. ---.|+.|.|.+| .++++- ++.
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~-gie 251 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLR-GIE 251 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhh-hHH
Confidence 555444 67899999999999997754 4788999999999999886443222 1124999999998 566665 568
Q ss_pred CCCcCceeeccCCCCCCCCCCC---CCccccceecccCCcchHH
Q 000471 1405 NLTSLETLRLFNCPKLKYFPEQ---GLPKSLSRLSIHNCPLIEK 1445 (1472)
Q Consensus 1405 ~l~~L~~L~l~~~~~l~~lp~~---~~~~sL~~L~l~~c~~l~~ 1445 (1472)
++.+|+.||+++|- +....+. ..+.+|+.|.+.|||.-|.
T Consensus 252 ~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999999999984 4433332 3467899999999998764
No 165
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.30 E-value=0.00057 Score=80.37 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=88.1
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 258 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1472)
.++.|.+..++++.+.+.-.-. -+-...+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 3578999999988887742100 01123456889999999999999999983 33333 222111
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH----------h----hHHhhcccccC--CCC
Q 000471 259 RISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY----------I----RWSELRCPFVA--GAA 322 (1472)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------~----~~~~l~~~l~~--~~~ 322 (1472)
.+ .....+ .....+...+.......+.+|+||+++.... . ....+...+.. ...
T Consensus 252 eL----~~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 EL----IQKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred hh----hhhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 111111 1111222233333345678999999743200 0 01111111111 123
Q ss_pred CcEEEEEcCChHHHHhh-----CCCCceeCCCCChHhHHHHHHhhhc
Q 000471 323 GSKIVVTTRNLVVAERM-----GADPVYQLKELSDDDCLCVLTQISL 364 (1472)
Q Consensus 323 ~s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 364 (1472)
+.+||.||...+..... ..+..+++...+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 56788888866544331 1234678899999999999987763
No 166
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0079 Score=67.86 Aligned_cols=187 Identities=13% Similarity=0.086 Sum_probs=100.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC-----cceEEEEecCCCCHHHHHHHHHHh
Q 000471 193 KEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY-----EIKAWTCVSEDFDVFRISKSILNS 267 (1472)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~~i~~~ 267 (1472)
...+.+...+..+. -...+.++|+.|+||+++|..++...-..... .+.-|+..+..+|...+-.. -+.
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNR 84 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCc
Confidence 34666777765432 24568899999999999998887532111100 00001111111111100000 000
Q ss_pred hcCCCCCCcccHHHHHHHHHhhh-----CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHhh-C
Q 000471 268 VASDQCKDKDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-G 340 (1472)
Q Consensus 268 l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~~-~ 340 (1472)
.+........++++.+. .+.+ .+++-++|+|+++......-..+...+.....++.+|++|...+ +.... .
T Consensus 85 -~~~k~~~~I~idqIR~l-~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 85 -TGDKLRTEIVIEQVREI-SQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred -ccccccccccHHHHHHH-HHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 00000001123332222 2222 25667999999988765555566665655556777777776543 33222 2
Q ss_pred CCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 341 ADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 341 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
....+.+.+++.+++.+.+.... . + .+.+..++..++|.|+.+..+.
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~~---~---~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQG---V---S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHcC---C---C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 33567899999999988886531 1 1 2336678999999998765544
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.0024 Score=83.30 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=84.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc----cCcceEEEEecCCCCHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
.++||+.+++++++.|.... ..-+.++|++|+|||++|+.++....... .....+|.- +...+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l-- 240 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL-- 240 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH--
Confidence 49999999999999996532 23456899999999999999887421110 012233321 11111
Q ss_pred HHHHhhcCCCCCCcccHH-HHHHHHHhhhC-CCeEEEEEeCCCCCC-------HhhHHhhcccccCCCCCcEEEEEcCCh
Q 000471 263 SILNSVASDQCKDKDDLN-LLQEKLKKQLS-GNKFLLVLDDVWNEN-------YIRWSELRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~-~~~~~l~~~l~-~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~s~iivTtR~~ 333 (1472)
+. +.. ...+.+ .+...+.+.-+ +++.+|++|++.... ..+...+..+.... ..-++|-+|...
T Consensus 241 --~a---~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~ 312 (852)
T TIGR03346 241 --IA---GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLD 312 (852)
T ss_pred --hh---cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHH
Confidence 10 100 011222 22233332222 468999999996431 01112222222222 224566566555
Q ss_pred HHHHhh-------CCCCceeCCCCChHhHHHHHHhhh
Q 000471 334 VVAERM-------GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 334 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
+..... ..-+.+.+...+.++..++++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 432211 122457888889999999887654
No 168
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=3.8e-05 Score=70.96 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=41.1
Q ss_pred cCCcceEEEecCCCCCccCCcccCCC-CcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCcee
Q 000471 596 HLPRLRVFSLRGCGNIFNLPNEIGNL-KHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHL 674 (1472)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~lp~~i~~L-~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 674 (1472)
....|...+|++| .++++|..|... +-++.|+|++|.|..+|..+..++.|+.|+++. +.+...|..|..|.+|-.|
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence 3444555555555 555555444322 245555555555555555555555555555554 3344444445455555555
Q ss_pred ecCCCC
Q 000471 675 RNSTAN 680 (1472)
Q Consensus 675 ~l~~~~ 680 (1472)
+..+|.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 544443
No 169
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0032 Score=72.23 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=91.6
Q ss_pred CCceeechhHHHH-HHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 185 EAKVYGREKEKEE-IIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 185 ~~~~vGr~~~~~~-l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
+..++|-...... +...+... .......+.|||..|.|||.|++++.+ ....+......+.+ +.+....+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHH
Confidence 4456666544332 22333222 112467899999999999999999998 34444443333333 23333444
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHh-hHH-hhcccccC-CCCCcEEEEEcCCh-------
Q 000471 264 ILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYI-RWS-ELRCPFVA-GAAGSKIVVTTRNL------- 333 (1472)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~~s~iivTtR~~------- 333 (1472)
++..+... -.+.+++.. .-=++++||++-.... .|. ++...|.. ...|-.||+|++..
T Consensus 158 ~v~a~~~~----------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 158 FVKALRDN----------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHHhh----------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 44443321 122344444 3348899999663211 122 22222211 12344899999753
Q ss_pred --HHHHhhCCCCceeCCCCChHhHHHHHHhhhcC
Q 000471 334 --VVAERMGADPVYQLKELSDDDCLCVLTQISLG 365 (1472)
Q Consensus 334 --~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 365 (1472)
.+...+...-++++.+.+.+....++.+++..
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 34455566678999999999999999887643
No 170
>PRK08116 hypothetical protein; Validated
Probab=97.21 E-value=0.001 Score=73.76 Aligned_cols=104 Identities=24% Similarity=0.228 Sum_probs=58.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
..+.++|.+|+|||.||.++++.. ..+...+++++ ..+++..+........ ..+... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 458899999999999999999853 22233455654 3345555544433221 112222 22333333
Q ss_pred eEEEEEeCCCCCCHhhHHh--hcccccC-CCCCcEEEEEcCCh
Q 000471 294 KFLLVLDDVWNENYIRWSE--LRCPFVA-GAAGSKIVVTTRNL 333 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~~s~iivTtR~~ 333 (1472)
. ||||||+......+|.. +...+.. -..|..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996543344433 2222211 12456799999753
No 171
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.20 E-value=8.8e-05 Score=92.48 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=29.6
Q ss_pred CCccEEEEecCCCcccCchhhhcCCCCccceEeecccCCcccc---ccccCCCccceEEecccccc
Q 000471 1102 SQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKYI---ARIQLPPSLKRLIVSRCWNL 1164 (1472)
Q Consensus 1102 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~---~~~~~~~~L~~L~l~~c~~l 1164 (1472)
++|+.|++++|..+++.........+++|+.|.+.+|..+++. .-...++.|++|+++.|..+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3444555555444444444444444555555555555543331 11233445555555555443
No 172
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.19 E-value=0.003 Score=74.01 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=96.0
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 258 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1472)
.++.|.+..+++|.+.+...-. .+-...+-+.++|++|.|||++|+++++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------H
Confidence 4688999998888876632100 022345778899999999999999999742 2222 12211 1
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC----------Hhh----HHhhcccccC--CCC
Q 000471 259 RISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN----------YIR----WSELRCPFVA--GAA 322 (1472)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~ 322 (1472)
. +.....+ .....+.+.+.......+.+|++|+++... ... +..+...+.. ...
T Consensus 214 ~----l~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 E----FVQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred H----HHHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1 1111111 111122233333334678999999985421 001 1122222211 224
Q ss_pred CcEEEEEcCChHHHHh--h---CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh
Q 000471 323 GSKIVVTTRNLVVAER--M---GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 323 ~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 390 (1472)
+..||.||...+.... . .-+..+.+...+.++-.++|..+... .....+.+ ..++++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccC----HHHHHHHcCCCC
Confidence 5678888886543321 1 22345788888888888888766532 22222223 344556665553
No 173
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.011 Score=66.77 Aligned_cols=179 Identities=12% Similarity=0.018 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc-------cCcceEEEEecCCCCHHHHHHHHH
Q 000471 193 KEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------HYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
...+++.+.+..+. -...+.++|+.|+||+++|+.++...--.. .....-++..+..+|...+
T Consensus 10 ~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (319)
T PRK06090 10 PVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI----- 79 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 34566666664432 245788999999999999998865211100 0000001111111111100
Q ss_pred HhhcCCCCCCcccHHHHHHHHHhhh-----CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHhh
Q 000471 266 NSVASDQCKDKDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM 339 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~~ 339 (1472)
..........++++.+ +.+.+ .+++-++|+|+++.........+...+.....++.+|++|.+.+ +....
T Consensus 80 ---~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 80 ---KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred ---ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000001122333322 22222 24566899999988877777777777766666777777766543 33332
Q ss_pred -CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 340 -GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 340 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
..-..+.+.+++++++.+.+.... . + .+..+++.++|.|+.+..+.
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~---~---~------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQG---I---T------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcC---C---c------hHHHHHHHcCCCHHHHHHHh
Confidence 334578999999999998886531 0 0 13567889999998776553
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0077 Score=69.33 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=89.9
Q ss_pred eee-chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHH
Q 000471 188 VYG-REKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILN 266 (1472)
Q Consensus 188 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1472)
++| -+..++.+...+..+. -.....++|+.|+||||+|+.+.+..-........ .+..-..-+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 566 6667778888775432 24677899999999999998886532111100000 0000000001100
Q ss_pred hhcC-----CCCCCcccHHHHHHHHHhh----hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HH
Q 000471 267 SVAS-----DQCKDKDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VA 336 (1472)
Q Consensus 267 ~l~~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~ 336 (1472)
.-.. .........+++.+.+... ..+.+-++|+|+++.........+...+.....++.+|++|.+.. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 0000112233333222211 235566899999987766666677777766566777887776543 22
Q ss_pred Hhh-CCCCceeCCCCChHhHHHHHHhh
Q 000471 337 ERM-GADPVYQLKELSDDDCLCVLTQI 362 (1472)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~lf~~~ 362 (1472)
... ....++++.++++++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 222 23467899999999998888653
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.13 E-value=0.002 Score=64.70 Aligned_cols=88 Identities=16% Similarity=-0.017 Sum_probs=46.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
..+.|+|++|+||||+|+.++...... ...++++..+........... ................ ...+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELR-LRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHH-HHHHHHHHHhc
Confidence 578999999999999999998743222 123555555444332222211 1111111111222222 22333333333
Q ss_pred -eEEEEEeCCCCCC
Q 000471 294 -KFLLVLDDVWNEN 306 (1472)
Q Consensus 294 -~~LlVlDdv~~~~ 306 (1472)
..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4999999997764
No 176
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.017 Score=65.35 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC--------cceEEEEecCCCCHHHHHHHHH
Q 000471 194 EKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY--------EIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
..+.+...+..+. -.....+.|+.|+||+++|++++...-..... +..-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 3556667665432 24567789999999999999887532111100 00011111122221111
Q ss_pred HhhcCCCCCCcccHHHHHH---HHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHhh-
Q 000471 266 NSVASDQCKDKDDLNLLQE---KLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM- 339 (1472)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~~- 339 (1472)
.. .......++++.+ .+... ..+++-++|+|+++.........+...+.....++.+|++|.+.+ +....
T Consensus 80 ---~p-~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EP-IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---cc-ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 00 0001122333332 22211 236667888999988877777777777766666778887777653 33222
Q ss_pred CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 340 GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 340 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
..-..+.+.++++++..+.+..... . . ...+...+..++|.|..+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~-~----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSS-A----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhc-c----C----hHHHHHHHHHcCCCHHHH
Confidence 2335789999999999988876531 1 1 123566788899999644
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.07 E-value=0.0057 Score=62.20 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=76.7
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc------------------cCcceEEEEe
Q 000471 190 GREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR------------------HYEIKAWTCV 251 (1472)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~ 251 (1472)
|-++..+.+.+.+..+. -...+.++|+.|+||+|+|..+++..--.. ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45667778888775542 245678999999999999988875321111 1122233322
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh-----CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEE
Q 000471 252 SEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKI 326 (1472)
Q Consensus 252 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 326 (1472)
.... .....+++. .+.+.+ .+++=++|+||++......+..+...+.....++++
T Consensus 76 ~~~~-------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 76 DKKK-------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTSS-------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccc-------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2110 012233333 222222 245678999999988878888888887777788999
Q ss_pred EEEcCChH-HHHh-hCCCCceeCCCC
Q 000471 327 VVTTRNLV-VAER-MGADPVYQLKEL 350 (1472)
Q Consensus 327 ivTtR~~~-v~~~-~~~~~~~~l~~L 350 (1472)
|++|++.. +... ......+.+.++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEECChHHChHHHHhhceEEecCCC
Confidence 99888764 2222 222344555554
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.04 E-value=0.0091 Score=63.89 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=75.0
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEE----ecCC-----CCH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTC----VSED-----FDV 257 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~~-----~~~ 257 (1472)
.+.+|......+..++... .+|.++|++|.|||+||.++..+.-..+.|+.++.+. +++. -+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 4678888888999988542 4899999999999999998876422233444333221 1111 011
Q ss_pred HHH----HHHHHHhhcCCCCCCcccHHHHHH--------HHHhhhCCCeE---EEEEeCCCCCCHhhHHhhcccccCCCC
Q 000471 258 FRI----SKSILNSVASDQCKDKDDLNLLQE--------KLKKQLSGNKF---LLVLDDVWNENYIRWSELRCPFVAGAA 322 (1472)
Q Consensus 258 ~~~----~~~i~~~l~~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 322 (1472)
.+- ++.+...+..-. .....+.... .--.+++++.+ +||+|.+.+.+..+...+... .+.
T Consensus 128 ~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~ 202 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCC
Confidence 111 122222221100 0011111100 00234566654 999999998876655555544 357
Q ss_pred CcEEEEEcCCh
Q 000471 323 GSKIVVTTRNL 333 (1472)
Q Consensus 323 ~s~iivTtR~~ 333 (1472)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 89999987644
No 179
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.01 Score=67.79 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=94.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
.....+.+.|++|+|||+||..++.. ..|+.+--++-..-. +.. +......+...+...-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~mi-------------G~s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMI-------------GLS---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHcc-------------Ccc---HHHHHHHHHHHHHHhh
Confidence 35667788999999999999999863 456544433221111 110 1222333444555556
Q ss_pred CCCeEEEEEeCCCCCCHhhHHhhcccc---------------cCCCCCcEEEEEcCChHHHHhhCC----CCceeCCCCC
Q 000471 291 SGNKFLLVLDDVWNENYIRWSELRCPF---------------VAGAAGSKIVVTTRNLVVAERMGA----DPVYQLKELS 351 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~~~~~~~~~l~~~l---------------~~~~~~s~iivTtR~~~v~~~~~~----~~~~~l~~L~ 351 (1472)
++.--.||+||+... .+|..+...+ |+.+..--|+-||....+.+.|+- ...|.++.++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 677789999999553 6666554443 222333335557778888888763 3468899888
Q ss_pred h-HhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 352 D-DDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 352 ~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
. ++..+.+...- .-.+.+.+.++++.+.+| +-..|+.+-..+
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7 67777776542 112223455566666655 333344444333
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.03 E-value=0.0051 Score=79.91 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=82.7
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchh---cc-CcceEE-EEecCCCCHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQ---RH-YEIKAW-TCVSEDFDVFRIS 261 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~w-v~~~~~~~~~~~~ 261 (1472)
.++||+.+++++++.|.... ..-+.++|++|+|||++|+.+....... .. ....+| ++.+. +.
T Consensus 179 ~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ 246 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV 246 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh
Confidence 59999999999999996542 2345689999999999999998732110 00 122222 22211 10
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHhhh-CCCeEEEEEeCCCCCCH-------hhHHhhcccccCCCCCcEEEEEcCCh
Q 000471 262 KSILNSVASDQCKDKDDLNLLQEKLKKQL-SGNKFLLVLDDVWNENY-------IRWSELRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~~s~iivTtR~~ 333 (1472)
. +... ...-.+.+...+.+.- .+++.+|++|++..... .+-..+..+.... ..-++|-+|...
T Consensus 247 ----a---g~~~-~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~ 317 (857)
T PRK10865 247 ----A---GAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLD 317 (857)
T ss_pred ----h---ccch-hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCH
Confidence 0 0000 1111122223333221 25689999999854310 1112222222222 234666666655
Q ss_pred HHHHhh-------CCCCceeCCCCChHhHHHHHHhhh
Q 000471 334 VVAERM-------GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 334 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
+..... ..-+.+.+..-+.++..++++...
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 432211 112345666668888888886554
No 181
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=0.00015 Score=90.31 Aligned_cols=133 Identities=21% Similarity=0.346 Sum_probs=63.3
Q ss_pred CCccceEEeccCCCCCc--cchhhcCCCCccEEEeccC-CCccccC-----CCCCCCCcceEEecCCCCCCCChhhhhcc
Q 000471 1005 PCRLQFLKLSKCEGLTR--LPQALLTLSSLTEMRISGC-ASLVSFP-----QAALPSHLRTVKIEDCNALESLPEAWMHN 1076 (1472)
Q Consensus 1005 l~~L~~L~Ls~~~~~~~--l~~~~~~l~~L~~L~l~~c-~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 1076 (1472)
.+.|+.|.+.+|..+.. +-.....++.|++|++++| ......+ .....++|+.|+++.|..+++..-.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 34555555555554444 2234445566666666652 2222111 11123556666666666555544443333
Q ss_pred CCCCcceEEeecCCCCCcCC---CCCCCCCccEEEEecCCCcccCchhhhcCCCCccceEeecc
Q 000471 1077 SNSSLESLKIRNCNSLVSFP---EVALPSQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKG 1137 (1472)
Q Consensus 1077 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 1137 (1472)
.+++|+.|.+.+|..+++.. ....+++|++|++++|..+++........++++|+.|.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 35666666666665433321 12234456666666666553332222223355544444433
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=97.00 E-value=0.0058 Score=75.90 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=96.5
Q ss_pred CceeechhHHHHHHHHH---hcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 186 AKVYGREKEKEEIIELL---LNDDL---RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||++|++++... .. -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----H
Confidence 45889877766655543 32210 011234568899999999999999998732 11 12333211 1
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC----------Hhh----HHhhcccccC--CCCC
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN----------YIR----WSELRCPFVA--GAAG 323 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~~ 323 (1472)
+. ....+ .....+...+.+.....+.+|++||++... ... +..+...+.. ...+
T Consensus 252 f~----~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11 11100 112233444555556778999999995431 111 1222222211 2345
Q ss_pred cEEEEEcCChHHHHh-h----CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCC
Q 000471 324 SKIVVTTRNLVVAER-M----GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGG 388 (1472)
Q Consensus 324 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 388 (1472)
-.||.||...+.... + .-+..+.+...+.++-.++++.++-... .. .......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LS----PDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cc----hhHHHHHHHhcCCC
Confidence 567777776543321 1 1235678888888888889988764311 11 12345667777777
No 183
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.028 Score=59.07 Aligned_cols=182 Identities=18% Similarity=0.192 Sum_probs=104.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEe-cCCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHHHHhh
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCV-SEDFDVFRISKSILNSVASDQCKD-KDDLNLLQEKLKKQ 289 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~ 289 (1472)
+.+++.|+|.-|.|||.++++.... .. =+.++-|.+ ....+...+...+...+....... ..-.+...+.+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 3569999999999999999955431 11 111222222 334566777788888777632211 11223333334433
Q ss_pred h-CCCe-EEEEEeCCCCCCHhhHHhhcccccCCCCCc---EEEEEcCCh-------HHHHhh-CCCCc-eeCCCCChHhH
Q 000471 290 L-SGNK-FLLVLDDVWNENYIRWSELRCPFVAGAAGS---KIVVTTRNL-------VVAERM-GADPV-YQLKELSDDDC 355 (1472)
Q Consensus 290 l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s---~iivTtR~~-------~v~~~~-~~~~~-~~l~~L~~~~~ 355 (1472)
. +++| ..+++||..+......+.++....-...++ +|+..-.-+ .+.... ....+ |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4677 999999998776555555544322111111 233322211 111111 11223 89999999998
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHh
Q 000471 356 LCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGG 398 (1472)
Q Consensus 356 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 398 (1472)
..+++.+..+...+.+ ---.+....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 8888777654432211 11245677889999999999987764
No 184
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.0014 Score=65.37 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCC--CCCCCcceeEeccccCCCCCCcccccccccccee
Q 000471 1289 TKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRF 1366 (1472)
Q Consensus 1289 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 1366 (1472)
.+...+||++|..... ..|.+++.|.+|.+++| .++.+... ..+++|+.|.+.+|.+........+..|+.|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4677888888665332 35778888888888887 46666554 6678889999998888765554567888888888
Q ss_pred eeccCCCCCCCCCC-----CCccccceeccCC
Q 000471 1367 TICGGCPDLVSPPP-----FPASLTNLWISDM 1393 (1472)
Q Consensus 1367 ~Ls~n~~~~~~~~~-----~~~~L~~L~l~~~ 1393 (1472)
.+-+|......--- -+++|++||+..-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88765433222111 1345555555544
No 185
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.93 E-value=0.00029 Score=65.27 Aligned_cols=99 Identities=16% Similarity=0.299 Sum_probs=70.7
Q ss_pred CcceEEEecCCCCCccCCc---ccCCCCcCcEEecCCccccccchhhhh-cccccEEecCCCcchhhhhhhhcccCCCce
Q 000471 598 PRLRVFSLRGCGNIFNLPN---EIGNLKHLRCLNLSRTRIQILPESINS-LYNLHTILLEDCHQLKKLCKDMGNLRKLHH 673 (1472)
Q Consensus 598 ~~Lr~L~L~~~~~~~~lp~---~i~~L~~Lr~L~L~~~~i~~lP~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 673 (1472)
+.+..+||+.| .+..+++ .+....+|...+|++|.++..|+.|.. .+-+.+|+|++ +.+..+|.++..++.||.
T Consensus 27 kE~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhh
Confidence 34556777777 6665553 345566777778888888888877754 44778888887 567788888888888888
Q ss_pred eecCCCCCcccCCCcccccccccccC
Q 000471 674 LRNSTANSLKEMPKGFGKLTSLLTLG 699 (1472)
Q Consensus 674 L~l~~~~~~~~~p~~i~~L~~L~~L~ 699 (1472)
|+++.|. +...|.-|..|.+|-.|.
T Consensus 105 lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 105 LNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccccCc-cccchHHHHHHHhHHHhc
Confidence 8888877 666777776666666663
No 186
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.92 E-value=0.0018 Score=68.87 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=28.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEec
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVS 252 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 252 (1472)
.++|+|..|.||||++..+.. .....|+.+++++-.
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 567899999999999999986 356678777776543
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.90 E-value=0.00088 Score=83.72 Aligned_cols=110 Identities=20% Similarity=0.220 Sum_probs=82.7
Q ss_pred hccCCccceeeecccCcccccchhhHHHHHHhccCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccc--hh
Q 000471 563 ICDVQHLRTFLPVNLSDYRHNYLAWSVLQRLLNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILP--ES 640 (1472)
Q Consensus 563 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP--~~ 640 (1472)
-.-++.||+|...+... ..+.+...+.+|++|+.||++++ ++..+ .++++|++|+.|.+++-.+..-+ ..
T Consensus 144 g~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hhhCcccceEEecCcee------cchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 34578888887765432 22335677899999999999999 89888 78999999999999987777433 46
Q ss_pred hhhcccccEEecCCCcch------hhhhhhhcccCCCceeecCCCC
Q 000471 641 INSLYNLHTILLEDCHQL------KKLCKDMGNLRKLHHLRNSTAN 680 (1472)
Q Consensus 641 i~~L~~L~~L~L~~~~~l------~~lp~~i~~L~~L~~L~l~~~~ 680 (1472)
+.+|++|++||+|..... ...-+.-..|++||.||.+++.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 789999999999973321 1111223358999999999876
No 188
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.89 E-value=0.011 Score=69.81 Aligned_cols=136 Identities=19% Similarity=0.102 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcC
Q 000471 191 REKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVAS 270 (1472)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1472)
|..-..++.+.+... ..++.|+|+-++||||+++.+.... .+. .+++...+......-+.+
T Consensus 22 ~~~~~~~l~~~~~~~-------~~i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d------- 82 (398)
T COG1373 22 RRKLLPRLIKKLDLR-------PFIILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLD------- 82 (398)
T ss_pred HHhhhHHHHhhcccC-------CcEEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHH-------
Confidence 334455555555221 2299999999999999997666521 111 444433222111100011
Q ss_pred CCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHH-----hh-CCCCc
Q 000471 271 DQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAE-----RM-GADPV 344 (1472)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~-----~~-~~~~~ 344 (1472)
....+.+.-..++..|+||.|... ..|......+.+.+.. +|++|+-+..... .. |....
T Consensus 83 -----------~~~~~~~~~~~~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 83 -----------LLRAYIELKEREKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred -----------HHHHHHHhhccCCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 111111111127889999999876 6788888878776666 8888887754332 22 33456
Q ss_pred eeCCCCChHhHHHHH
Q 000471 345 YQLKELSDDDCLCVL 359 (1472)
Q Consensus 345 ~~l~~L~~~~~~~lf 359 (1472)
+++.||+-.|...+-
T Consensus 149 ~~l~PlSF~Efl~~~ 163 (398)
T COG1373 149 LELYPLSFREFLKLK 163 (398)
T ss_pred EEECCCCHHHHHhhc
Confidence 899999999987654
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.89 E-value=0.018 Score=59.46 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=70.2
Q ss_pred cCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 184 NEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
+=..++|.|...+.+++--..-. ......-|.+||.-|+|||+|++++.+. +....-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 34568999988888776432211 1122346789999999999999999873 3333221 2222111
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCC---CCCcEEEEEcCCh
Q 000471 264 ILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAG---AAGSKIVVTTRNL 333 (1472)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~~s~iivTtR~~ 333 (1472)
+..++-.+.+.++. ..+||.|..||..-+ ....++.++..+..+ .+...++..|.++
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11222233333332 367999999999543 335567777666543 2334455555443
No 190
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.88 E-value=0.024 Score=72.66 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=39.8
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+.+.+|.++.+++|+++|............++.++|++|+||||+|+.++.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999988742211122346899999999999999999986
No 191
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.011 Score=64.80 Aligned_cols=188 Identities=16% Similarity=0.149 Sum_probs=102.9
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 258 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1472)
.++=|-++.+++|.+...-+=. -+-+.++=|.+||++|.|||-||++|++. ....| +.+...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 3566889989888887632110 03345677899999999999999999983 33333 333222
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh-CCCeEEEEEeCCCCCC--------------HhhHHhhcccccCC--C
Q 000471 259 RISKSILNSVASDQCKDKDDLNLLQEKLKKQL-SGNKFLLVLDDVWNEN--------------YIRWSELRCPFVAG--A 321 (1472)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~ 321 (1472)
++.+..-++.. .+.+.+-+.- ...+..|.+|.++... +...-++...+..+ .
T Consensus 220 ----ElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ----ELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 23332222211 1222222222 2468899999885421 11122233333332 3
Q ss_pred CCcEEEEEcCChHHHHhh-----CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh----hH
Q 000471 322 AGSKIVVTTRNLVVAERM-----GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP----LA 392 (1472)
Q Consensus 322 ~~s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP----La 392 (1472)
..-|||.+|...++.... .-+..+++..-+.+.=.++|+-++-.- +....-+++ .+++.+.|.- -|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHH----HHHHhcCCCchHHHHH
Confidence 457899988876654322 223456776444444456787776332 223333443 4556666654 34
Q ss_pred HHHHHhhh
Q 000471 393 AKTLGGLL 400 (1472)
Q Consensus 393 l~~~~~~L 400 (1472)
+.+=|+++
T Consensus 364 ictEAGm~ 371 (406)
T COG1222 364 ICTEAGMF 371 (406)
T ss_pred HHHHHhHH
Confidence 55555554
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=96.87 E-value=0.00052 Score=70.15 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=27.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchh-ccCcceEE
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQ-RHYEIKAW 248 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 248 (1472)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999854333 45676666
No 193
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.039 Score=63.20 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc--------cCcceEEEEecCCCCHHHHHHHH
Q 000471 193 KEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--------HYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
..-+++...+..+. -..-+.+.|+.|+||+++|.+++...--.. +....-++..+..+|+..+
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 34567777775432 245778999999999999988765211100 0000111112222222111
Q ss_pred HHhhcCCCCCCcccHHHHHH---HHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHh-
Q 000471 265 LNSVASDQCKDKDDLNLLQE---KLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER- 338 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~- 338 (1472)
..........++++.+ .+... ..+++-++|+|+++.........+...+.....++.+|++|.+.+ +...
T Consensus 80 ----~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ----ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000001122333332 22211 236677999999988776666777766666566777777776643 4333
Q ss_pred hCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 339 MGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 339 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
....+.+.+.+++++++.+.+.... + . + .+.+..++..++|.|..+..+
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~-~-~---~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV-T-M---S----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc-C-C---C----HHHHHHHHHHcCCCHHHHHHH
Confidence 2233567999999999988776532 1 1 1 234678899999999654433
No 194
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.81 E-value=0.014 Score=75.49 Aligned_cols=51 Identities=35% Similarity=0.511 Sum_probs=38.6
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.+++|.++.+++|.+++......+.....++.++|++|+|||++|+.+++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999998775321112223458999999999999999999973
No 195
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.79 E-value=0.017 Score=70.95 Aligned_cols=179 Identities=14% Similarity=0.127 Sum_probs=93.4
Q ss_pred CceeechhHHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 186 AKVYGREKEKEEIIELLL---NDDL---RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
.+++|.+..++++.+++. ..+. .+....+-+.++|++|+|||++|+++++.. ... ++.++.. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 468898877766655443 1100 012234558899999999999999998742 112 2222211 1
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC----------HhhHHh----hccccc--CCCCC
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN----------YIRWSE----LRCPFV--AGAAG 323 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~~ 323 (1472)
+. ....+ .....+...+.......+.+|++||++... ...+.. +...+. ....+
T Consensus 124 ~~----~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 FV----EMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 11111 112233334444444567899999995521 011111 111111 12234
Q ss_pred cEEEEEcCChHHHH-----hhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh
Q 000471 324 SKIVVTTRNLVVAE-----RMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 324 s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 390 (1472)
-.||.||...+... ...-+..+.+...+.++-.++|..+..... .... ....++++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~-~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK-LAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC-CCcc----hhHHHHHHhCCCCC
Confidence 55666776653221 112335678888888888888887763321 1111 22447777777743
No 196
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0022 Score=76.52 Aligned_cols=166 Identities=21% Similarity=0.235 Sum_probs=90.7
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
+.+-+|.++.+++|+++|.-..-...-+-.++++|||+|||||+|++.++. ...+.| +-+.+++--|..++-..-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcccc
Confidence 456789999999999998643322233457999999999999999999997 344444 234444444443321111
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHh-------hHHhhccc---------ccCC-CCCcEEE
Q 000471 265 LNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYI-------RWSELRCP---------FVAG-AAGSKIV 327 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------~~~~l~~~---------l~~~-~~~s~ii 327 (1472)
-..++ .. ...+.+.+++. +.+.=+++||.++..... .+-++..| +... ..=|.|+
T Consensus 397 RTYIG------am-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIG------AM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccc------cC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00111 11 11222333322 456778999998553210 01111111 1110 1124443
Q ss_pred -EEcCCh-H-H-HHhhCCCCceeCCCCChHhHHHHHHhhh
Q 000471 328 -VTTRNL-V-V-AERMGADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 328 -vTtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
|||-+. + + +..+....++++.+.+++|=.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 455432 1 1 2223444678888989888877766664
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.76 E-value=0.0012 Score=74.19 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=42.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997754322345689999999999999999999874
No 198
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.006 Score=72.29 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=109.7
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILN 266 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1472)
++||-+.-...|...+..+.- ..-....|+-|+||||+|+.++...-... | ...+.+..-..-++|..
T Consensus 17 evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 579999999999999976532 23456789999999999998875321110 1 11111111122222222
Q ss_pred hh-------cCCCCCCcccHHHHHHHHHhh-hCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHHH
Q 000471 267 SV-------ASDQCKDKDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAE 337 (1472)
Q Consensus 267 ~l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~~ 337 (1472)
.- ..-.....++++++.+.+.-. .+++.=+.|+|.|.-.....|..+..-+...-...+.|..|.+. .+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 10 000011122333333332221 13555589999998777777888877776555566666666654 3322
Q ss_pred -hhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh
Q 000471 338 -RMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL 391 (1472)
Q Consensus 338 -~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 391 (1472)
.....+.|.++.++.++-...+...+-...-..+ .+...-|++..+|...
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 2234467999999999988888887743321111 4556667777777553
No 199
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.75 E-value=0.031 Score=72.05 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=68.9
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLR---GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
..++|.+..++.+.+.+...... ......++.++|+.|+|||+||+.++... +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 45889999999988888642110 11234568899999999999999998632 23345555544222111
Q ss_pred HHHHhhcCCCC-CCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhccccc
Q 000471 263 SILNSVASDQC-KDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFV 318 (1472)
Q Consensus 263 ~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 318 (1472)
+...++.... ........+.+.+++ ...-+++||+++..+...+..+...+.
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1111221111 011112223333332 234599999998887666666665544
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.73 E-value=0.035 Score=61.75 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHH
Q 000471 193 KEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRIS 261 (1472)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1472)
+-++++..++..+ +-|.++|++|+|||++|+++++ ... ....++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 3455666666432 3466899999999999999986 221 123456666555544443
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.72 E-value=0.005 Score=69.46 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=70.1
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhc
Q 000471 190 GREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVA 269 (1472)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1472)
+|....+...+++..-.. ....+-+.++|..|+|||.||.++++... +.. ..+.++++ ..++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEH------HHHHHHHHHHHh
Confidence 455555556666643221 11345788999999999999999998532 222 23455544 345555544442
Q ss_pred CCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHh--hccccc-CC-CCCcEEEEEcCC
Q 000471 270 SDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSE--LRCPFV-AG-AAGSKIVVTTRN 332 (1472)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l~-~~-~~~s~iivTtR~ 332 (1472)
.. +.. +.+.. + .+-=||||||+..+....|.. +...+. .. ..+-.+|+||..
T Consensus 205 ~~------~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 122 22222 2 244589999998776666753 434332 22 245568888874
No 202
>PRK08181 transposase; Validated
Probab=96.71 E-value=0.0026 Score=70.00 Aligned_cols=101 Identities=19% Similarity=0.049 Sum_probs=54.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
.-+.++|++|+|||.||.++.+.. ......+.|++ ..+++..+..... ....+.....+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~------~~~~~~~l~~l-----~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARR------ELQLESAIAKL-----DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHh------CCcHHHHHHHH-----hc
Confidence 358899999999999999998732 22233445554 3445554433211 11222222222 23
Q ss_pred eEEEEEeCCCCCCHhhHH--hhcccccCCCCCcEEEEEcCCh
Q 000471 294 KFLLVLDDVWNENYIRWS--ELRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~~~~s~iivTtR~~ 333 (1472)
-=||||||+.......|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 349999999654333322 2222222211223588888864
No 203
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.70 E-value=0.0063 Score=71.25 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=36.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.++||++.++.+...+..+. -|.|+|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 38999999999999987653 478999999999999999986
No 204
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.68 E-value=0.0073 Score=65.87 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=35.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRI 260 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 260 (1472)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 44679999999999999999999863 32334678899887 5555443
No 205
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.66 E-value=0.027 Score=67.28 Aligned_cols=208 Identities=16% Similarity=0.095 Sum_probs=119.0
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc---hhccCc--ceEEEEecCCCCHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHYE--IKAWTCVSEDFDVFRIS 261 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f~--~~~wv~~~~~~~~~~~~ 261 (1472)
.+-+||.|..+|.+.+...-. .++..+.+.|.|.+|.|||..+..|.+... .++.-. ..+.|+.-.-..+.+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 366899999999988865322 123456999999999999999999987322 112222 23445555556789999
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHh-hhCCCeEEEEEeCCCCC---CHhhHHhhcccccC-CCCCcEEEEEcCC--hH
Q 000471 262 KSILNSVASDQCKDKDDLNLLQEKLKK-QLSGNKFLLVLDDVWNE---NYIRWSELRCPFVA-GAAGSKIVVTTRN--LV 334 (1472)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~---~~~~~~~l~~~l~~-~~~~s~iivTtR~--~~ 334 (1472)
..|..++.+........++.+...+.. .-+.+..++++|+++.. .+.- +...|.| ..++||++|.+=. .+
T Consensus 476 ~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdV---lYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 476 EKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDV---LYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHH---HHHHhcCCcCCCCceEEEEeccccc
Confidence 999999988654333334433333320 01245688999987432 2221 2222222 2467776654421 11
Q ss_pred ---------HHHhhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhh
Q 000471 335 ---------VAERMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLL 400 (1472)
Q Consensus 335 ---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 400 (1472)
++..++- ..+...+.+.++-.++...+..+... ......+-+|++|+.-.|..-.|+.+.-++.
T Consensus 553 lPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred CHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1111111 23566777777777777666544321 1222334455666666666666665555443
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.0069 Score=66.73 Aligned_cols=92 Identities=22% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhc----cCcceEEEEecCCCCHHHHHHHHHHhhcCCCC-----------CC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFRISKSILNSVASDQC-----------KD 275 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~~ 275 (1472)
..-.++.|+|.+|+|||++|.+++....... .-..++|++....++..++. ++++..+.... ..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 4568999999999999999999974322211 13578999988877765443 33333322110 01
Q ss_pred cccHHHHHHHHHhhhC-C-CeEEEEEeCCC
Q 000471 276 KDDLNLLQEKLKKQLS-G-NKFLLVLDDVW 303 (1472)
Q Consensus 276 ~~~~~~~~~~l~~~l~-~-k~~LlVlDdv~ 303 (1472)
..+.......+.+.+. . +.-+||+|-+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1122223333444443 3 55688888873
No 207
>PRK06526 transposase; Provisional
Probab=96.62 E-value=0.0029 Score=69.30 Aligned_cols=100 Identities=20% Similarity=0.117 Sum_probs=51.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
.-+.|+|++|+|||+||.++..... +..+ .+.|+ +..++...+..... . ... ...+.+. .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~-----~-~~~---~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH-----A-GRL---QAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh-----c-CcH---HHHHHHh--cc
Confidence 4588999999999999999986432 1222 22332 33344444432211 1 111 1223322 23
Q ss_pred eEEEEEeCCCCCCHhhHH--hhcccccCC-CCCcEEEEEcCCh
Q 000471 294 KFLLVLDDVWNENYIRWS--ELRCPFVAG-AAGSKIVVTTRNL 333 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~~s~iivTtR~~ 333 (1472)
.-+||+||+.......|. .+...+... ..++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999754322222 122222111 2243 88888764
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.60 E-value=0.018 Score=74.94 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=74.8
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLR---GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
..++|.+..++.+...+.....+ .+....++.++|+.|+|||++|+.+++.. ...-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 45899999999998888643210 11223578899999999999999998631 11112234444433211 1
Q ss_pred HHHHhhcCCCCC--CcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCC-----------CCCcEEEEE
Q 000471 263 SILNSVASDQCK--DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVVT 329 (1472)
Q Consensus 263 ~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iivT 329 (1472)
.....+.+.... .......+...++. ...-+|+|||+...+...+..+...+..+ ...+.||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~---~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHh---CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 111222221111 11111122222221 22359999999877766677666554332 122347788
Q ss_pred cCC
Q 000471 330 TRN 332 (1472)
Q Consensus 330 tR~ 332 (1472)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 875
No 209
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.033 Score=63.50 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCCh-HHHHh-hCCCCceeCCCCChHhHHHHHHhhhcCCCCC
Q 000471 292 GNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAER-MGADPVYQLKELSDDDCLCVLTQISLGARDF 369 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 369 (1472)
+++-++|+|+++......+..+...+.....++.+|++|.+. .+... ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 556688999999888777888877777666777777666654 33322 2233578999999999998887641 1
Q ss_pred CCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 370 TRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
. + ...++..++|.|..+..+.
T Consensus 206 -~--~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -A--D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -C--h----HHHHHHHcCCCHHHHHHHH
Confidence 1 0 2235778899997555443
No 210
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0035 Score=66.14 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=51.2
Q ss_pred ccCCcceEEEecCCCCCccC---CcccCCCCcCcEEecCCccccccchhh-hhcccccEEecCCCcc-hhhhhhhhcccC
Q 000471 595 NHLPRLRVFSLRGCGNIFNL---PNEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLEDCHQ-LKKLCKDMGNLR 669 (1472)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~l---p~~i~~L~~Lr~L~L~~~~i~~lP~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~ 669 (1472)
.....++.|||.+| .+..- -.-+.+|++|++|+|+.|.+..--.+. --+.+|++|.|.+... ..........++
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 44567777888777 55432 222456778888888887654221111 3456778888776321 133344566777
Q ss_pred CCceeecCCCC
Q 000471 670 KLHHLRNSTAN 680 (1472)
Q Consensus 670 ~L~~L~l~~~~ 680 (1472)
+++.|+++.|+
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77777777764
No 211
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.58 E-value=0.012 Score=63.64 Aligned_cols=172 Identities=21% Similarity=0.199 Sum_probs=94.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC-cchhccCcceEEEEecCCCCH-HHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND-DRVQRHYEIKAWTCVSEDFDV-FRISKSI 264 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~~-~~~~~~i 264 (1472)
.++|-.++..++.+|+.+... .+...-|.|+|+.|.|||+|...+..+ .++.++ ..-|...+.... +-.+++|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHH
Confidence 488999999999998875322 122345779999999999999887765 122233 344444444332 2244555
Q ss_pred HHhhcCCCCC---CcccHHHHHHHHHhhhC------CCeEEEEEeCCCCCCHhhHHhhcccc----c-CCCCCcEEEEEc
Q 000471 265 LNSVASDQCK---DKDDLNLLQEKLKKQLS------GNKFLLVLDDVWNENYIRWSELRCPF----V-AGAAGSKIVVTT 330 (1472)
Q Consensus 265 ~~~l~~~~~~---~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~l~~~l----~-~~~~~s~iivTt 330 (1472)
..|+..+-.. ...+..+....+-..|+ +-++..|+|.++-.....-..+.-.+ . ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5554332111 12222333333333343 23688888887553221111111111 1 123446677899
Q ss_pred CChH-------HHHhhCCCCceeCCCCChHhHHHHHHhhh
Q 000471 331 RNLV-------VAERMGADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 331 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
|-.. |-.......++-++.++-++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9642 33333333456667777788888877765
No 212
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.56 E-value=0.069 Score=61.22 Aligned_cols=200 Identities=14% Similarity=0.137 Sum_probs=120.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHH-HHHhcCcchhccCcceEEEEecCC---CCHHHHHHHHHH
Q 000471 191 REKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLA-QLVYNDDRVQRHYEIKAWTCVSED---FDVFRISKSILN 266 (1472)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 266 (1472)
|.+..++|-.||.+.. -.+|.|.||-|.||+.|+ .++..+.+. +..++|.+- .+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5678899999997653 369999999999999999 777764322 555555432 233445555555
Q ss_pred hhcCC-----------------------CCCCcccHH-HHHH-------HHHh-------------------hhC---CC
Q 000471 267 SVASD-----------------------QCKDKDDLN-LLQE-------KLKK-------------------QLS---GN 293 (1472)
Q Consensus 267 ~l~~~-----------------------~~~~~~~~~-~~~~-------~l~~-------------------~l~---~k 293 (1472)
+++-- ...-..+.+ ++.. .+++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 55431 110011111 1111 1111 111 12
Q ss_pred eEEEEEeCCCCCC---------HhhHHhhcccccCCCCCcEEEEEcCChHHHHh----hCC--CCceeCCCCChHhHHHH
Q 000471 294 KFLLVLDDVWNEN---------YIRWSELRCPFVAGAAGSKIVVTTRNLVVAER----MGA--DPVYQLKELSDDDCLCV 358 (1472)
Q Consensus 294 ~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~----~~~--~~~~~l~~L~~~~~~~l 358 (1472)
|=+||+|+.-... ..+|..... ..+-.+||++|-+...... +.. ...+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999985432 123443221 2345688888887654443 322 24578899999999999
Q ss_pred HHhhhcCCCCC------------CCC----ccHHHHHHHHHHHhCCChhHHHHHHhhhcCCCCh
Q 000471 359 LTQISLGARDF------------TRH----LSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDP 406 (1472)
Q Consensus 359 f~~~a~~~~~~------------~~~----~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~ 406 (1472)
...+.-..... ... ....+-....++.+||==.-+..+++.++....+
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 88876432110 000 1233445677889999999999999999887664
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.0088 Score=64.77 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=56.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
...+.++|.+|+|||+||.++++.. ...-..+++++ ..++...+-..... .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN----SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh----ccccHHH----HHHHhc-
Confidence 3478899999999999999999843 22223445553 34444444333321 1112222 222343
Q ss_pred CeEEEEEeCCCCCCHhhHHh--hcccccCC-CCCcEEEEEcCC
Q 000471 293 NKFLLVLDDVWNENYIRWSE--LRCPFVAG-AAGSKIVVTTRN 332 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~~s~iivTtR~ 332 (1472)
+.=+||+||+......+|+. +...+... ...-.+||||..
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34488899997765555653 22222111 123457777764
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=96.51 E-value=0.0051 Score=67.91 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 000471 214 SVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
..+.|+|++|+|||+||.++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999763
No 215
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.50 E-value=0.055 Score=55.31 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=35.5
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.++||-++.++++.-.-.+ ++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4699999999988766643 3466788999999999998877765
No 216
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.50 E-value=0.064 Score=62.51 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 191 REKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
|+.-.+.+.+.+...+ .....+|+|.|.=|+||||+.+.+.+.
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455677788876542 256789999999999999999998774
No 217
>PRK12377 putative replication protein; Provisional
Probab=96.50 E-value=0.0057 Score=66.37 Aligned_cols=101 Identities=19% Similarity=0.103 Sum_probs=55.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
..+.++|.+|+|||+||.++++.. ......++++++. +++..+-..... ...... .+. .+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~~---~l~-~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGEK---FLQ-EL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHHH---HHH-Hh-cC
Confidence 578899999999999999999843 2333345666543 344444333321 111111 122 22 34
Q ss_pred eEEEEEeCCCCCCHhhHHh--hcccccCC-CCCcEEEEEcCC
Q 000471 294 KFLLVLDDVWNENYIRWSE--LRCPFVAG-AAGSKIVVTTRN 332 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~~s~iivTtR~ 332 (1472)
--||||||+.......|.. +...+... ...--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995544344432 22222211 122346778764
No 218
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.47 E-value=0.0033 Score=64.95 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=50.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
.-+.++|..|+|||.||.++.+.. .... ..+.|+.+ .+++..+ ..... ..........+. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g-~~v~f~~~------~~L~~~l----~~~~~--~~~~~~~~~~l~-----~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKG-YSVLFITA------SDLLDEL----KQSRS--DGSYEELLKRLK-----R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHH----HCCHC--CTTHCHHHHHHH-----T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCC-cceeEeec------Cceeccc----ccccc--ccchhhhcCccc-----c
Confidence 568999999999999999998743 2222 23556543 3344443 22211 112222222222 2
Q ss_pred eEEEEEeCCCCCCHhhHHh--hcccccCCCCCcEEEEEcCCh
Q 000471 294 KFLLVLDDVWNENYIRWSE--LRCPFVAGAAGSKIVVTTRNL 333 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~~~~s~iivTtR~~ 333 (1472)
-=||||||+......+|.. +...+........+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 3478899997765445432 111111111123588888753
No 219
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.44 E-value=0.014 Score=60.51 Aligned_cols=179 Identities=20% Similarity=0.215 Sum_probs=97.5
Q ss_pred CceeechhHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKE---EIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
+++||.++.+. -|.+.|...+.-++-.++-|..+|++|.|||.+|+++++..++ .| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----ATEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hHHH--
Confidence 46899887764 4667776544334456788999999999999999999985433 12 1111 1111
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHh-hHHhhcc-------c----cc--CCCCCcEEEE
Q 000471 263 SILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYI-RWSELRC-------P----FV--AGAAGSKIVV 328 (1472)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~~~l~~-------~----l~--~~~~~s~iiv 328 (1472)
|-+.++ +....+.+...+.-+.-++++.+|.++....+ .+..++. + +. ..+.|...|-
T Consensus 188 -iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111111 11222222222333456899999988553211 1122211 1 11 1245666677
Q ss_pred EcCChHHHHhh---CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh
Q 000471 329 TTRNLVVAERM---GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 329 TtR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 390 (1472)
.|...+..... .-..-++..--+++|-.+++..++-.-.-+- ..-.+.++++.+|+.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGMS 319 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCCC
Confidence 77766654332 1123456666778888888888773221111 122455666777653
No 220
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.41 E-value=0.008 Score=77.83 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=75.3
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL---RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|++++.. ..+.....+-++++.-.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 4689999999999998864211 02233558899999999999999988753 2111112222332221111
Q ss_pred HHHHhhcCCCCC--CcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCC-----------CCcEEEEE
Q 000471 263 SILNSVASDQCK--DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGA-----------AGSKIVVT 329 (1472)
Q Consensus 263 ~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~iivT 329 (1472)
.-...+.+.... .......+...+++ ...-+|+||++...+...+..+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 011112111110 11111223333332 445699999998777666666655544331 44567777
Q ss_pred cCC
Q 000471 330 TRN 332 (1472)
Q Consensus 330 tR~ 332 (1472)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.41 E-value=0.011 Score=63.77 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=37.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
..-+++.|+|++|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998763 333456789999876 66555444
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.40 E-value=0.0095 Score=65.94 Aligned_cols=37 Identities=24% Similarity=0.154 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhcc-CcceEEEEe
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRH-YEIKAWTCV 251 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 251 (1472)
...+.++|..|+|||+||.++++.. ... ...+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH
Confidence 4578999999999999999999843 222 334566654
No 223
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.39 E-value=0.017 Score=71.03 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=35.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5999999999998876432 234567999999999999999975
No 224
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.38 E-value=0.015 Score=65.87 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcc-eEEEEecCC-CCHHHHHHHHHHhhcCC
Q 000471 194 EKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEI-KAWTCVSED-FDVFRISKSILNSVASD 271 (1472)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~ 271 (1472)
-..++++.+..- +.-.-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++++.+...+...
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 345577777542 1224568999999999999999887321 122234 367666655 56788888888777654
Q ss_pred CCCCccc----HHHHHHHHHhhh--CCCeEEEEEeCCC
Q 000471 272 QCKDKDD----LNLLQEKLKKQL--SGNKFLLVLDDVW 303 (1472)
Q Consensus 272 ~~~~~~~----~~~~~~~l~~~l--~~k~~LlVlDdv~ 303 (1472)
..+.... .......+.+++ ++++++||+|++.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 3211111 111111222222 4899999999993
No 225
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.37 E-value=0.015 Score=57.78 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=62.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC---CCHHHHHHHHHHhhc-----CCC----CCCcc---c
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED---FDVFRISKSILNSVA-----SDQ----CKDKD---D 278 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~-----~~~----~~~~~---~ 278 (1472)
..|-|++..|.||||+|...+- +...+=..+.+|..-+. ......++.+ ..+. ... ..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788899999999999977765 33333233444443332 2333333332 1110 000 00001 1
Q ss_pred HHHHHHHHHhhhCCCe-EEEEEeCCCCC---CHhhHHhhcccccCCCCCcEEEEEcCChH
Q 000471 279 LNLLQEKLKKQLSGNK-FLLVLDDVWNE---NYIRWSELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 279 ~~~~~~~l~~~l~~k~-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
.....+..++.+.... =|+|||++-.. .....+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233344444444 49999998442 22344555555555556778999999854
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.33 E-value=0.015 Score=76.03 Aligned_cols=138 Identities=15% Similarity=0.180 Sum_probs=77.3
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLR---GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
..++|.+..++.+.+.+...... ......++.++|+.|+|||++|+.+... ....-...+.++++.-.....+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-H
Confidence 45899999999999998753210 1122467889999999999999999863 1111123344444432221111 1
Q ss_pred HHHHhhcCCCC-CCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCC-----------CCCcEEEEEc
Q 000471 263 SILNSVASDQC-KDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVVTT 330 (1472)
Q Consensus 263 ~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iivTt 330 (1472)
.+ ++.+.. ........+...+++ ....+|+||++...+...+..+...+..+ -..+-||+||
T Consensus 642 ~l---~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 642 RL---IGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred Hh---cCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 11 121111 011111223333332 23359999999888777777776655332 1334477777
Q ss_pred CC
Q 000471 331 RN 332 (1472)
Q Consensus 331 R~ 332 (1472)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 64
No 227
>PRK04132 replication factor C small subunit; Provisional
Probab=96.31 E-value=0.071 Score=67.77 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=96.1
Q ss_pred cCCCcHHHHHHHHhcCcchhccCc-ceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEE
Q 000471 221 MGGVGKTTLAQLVYNDDRVQRHYE-IKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVL 299 (1472)
Q Consensus 221 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVl 299 (1472)
|.|+||||+|.+++++. ....++ ..+-++++...... ..++++..+..... .-..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 67899999999999842 112222 34556666544443 33333333221111 00124579999
Q ss_pred eCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHhh-CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHH
Q 000471 300 DDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKE 377 (1472)
Q Consensus 300 Ddv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~ 377 (1472)
|+++.........+...+......+++|++|.+.. +.... .....+.+.+++.++....+...+.... ...+ .+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~---~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELT---EE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCC---HH
Confidence 99999877777777776665455677777666543 32222 2236789999999998888776653221 1111 46
Q ss_pred HHHHHHHHhCCChhHHHHHH
Q 000471 378 VGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 378 ~~~~i~~~~~glPLal~~~~ 397 (1472)
....|++.++|.+..+..+-
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 78899999999886554433
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.02 Score=66.89 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=82.0
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc-------------------cCcceE
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HYEIKA 247 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 247 (1472)
+++|-+....++..+..... .....+.++|++|+||||+|.++++...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46777888888888886432 1233588999999999999999886421111 112233
Q ss_pred EEEecCCCC---HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCc
Q 000471 248 WTCVSEDFD---VFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGS 324 (1472)
Q Consensus 248 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s 324 (1472)
.+..+.... ..+..+++.+....... .++.-++++|+++......-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 333333322 12223333222221110 3567899999998876655556666555556778
Q ss_pred EEEEEcCChH-HHHhh-CCCCceeCCC
Q 000471 325 KIVVTTRNLV-VAERM-GADPVYQLKE 349 (1472)
Q Consensus 325 ~iivTtR~~~-v~~~~-~~~~~~~l~~ 349 (1472)
++|++|.... +.... .....+++.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCC
Confidence 8888887432 22211 1223456665
No 229
>PRK04296 thymidine kinase; Provisional
Probab=96.26 E-value=0.0086 Score=62.90 Aligned_cols=114 Identities=9% Similarity=-0.074 Sum_probs=62.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHHHHhhhCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK-DKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 292 (1472)
.++.|+|+.|.||||+|..++.. ...+...++.+. ..++.+.....++.+++..... .....+++...+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999888863 333333333332 1112222233445555432211 11233444445544 334
Q ss_pred CeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH
Q 000471 293 NKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
+.-+||+|.+.-.+..+..++...+. ..|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 45599999996543222233333222 35788999998744
No 230
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.069 Score=62.58 Aligned_cols=99 Identities=20% Similarity=0.300 Sum_probs=65.2
Q ss_pred CceeechhHHHHHHHHHhcCCCC------CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLR------GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
.++=|.++.+.++.+++..-... +=...+-|.++|++|.|||.||+++++...+ . ++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecch-----
Confidence 46778999888888877542110 2234577889999999999999999985332 2 2333332
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCC
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNE 305 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 305 (1472)
+|+..+.+ .+.+.+.+.+.+.-..-++++++|+++-.
T Consensus 258 ---eivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ---EIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ---hhhcccCc------ccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 33333332 33445555666666778999999999654
No 231
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.24 E-value=0.0037 Score=78.25 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=29.8
Q ss_pred hcccccEEecCCCcc-hhhhhhhhcccCCCceeecCCCCCcccCCCcccccccccccC
Q 000471 643 SLYNLHTILLEDCHQ-LKKLCKDMGNLRKLHHLRNSTANSLKEMPKGFGKLTSLLTLG 699 (1472)
Q Consensus 643 ~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 699 (1472)
.|+.|++|.+++-.. ...+-.-..++++|+.||+++++ +..+ .|+++|++||.|.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHh
Confidence 355555555554111 11222334456666777777665 4444 5677777777663
No 232
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.20 E-value=0.012 Score=61.30 Aligned_cols=132 Identities=22% Similarity=0.252 Sum_probs=64.2
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEe----cCCC-----CHHH-
Q 000471 190 GREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCV----SEDF-----DVFR- 259 (1472)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~-----~~~~- 259 (1472)
.+..+-...++.|.. ..++.+.|++|.|||.||.+.+-+.-..++|+.++++.- .+.. +..+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 344555666676653 358999999999999999888765444577877776532 1111 0000
Q ss_pred ---HHHHHHHhhcCCCCCCcccHHHHHHH------HHhhhCCC---eEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEE
Q 000471 260 ---ISKSILNSVASDQCKDKDDLNLLQEK------LKKQLSGN---KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIV 327 (1472)
Q Consensus 260 ---~~~~i~~~l~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ii 327 (1472)
....+...+..-. .....+.+.+. --.+++++ ..+||+|++.+....++..+... .+.|||||
T Consensus 76 ~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 0111111111110 11122222210 01234554 46999999999877777777554 35789999
Q ss_pred EEcCChH
Q 000471 328 VTTRNLV 334 (1472)
Q Consensus 328 vTtR~~~ 334 (1472)
++--..+
T Consensus 151 ~~GD~~Q 157 (205)
T PF02562_consen 151 ITGDPSQ 157 (205)
T ss_dssp EEE----
T ss_pred EecCcee
Confidence 9976543
No 233
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00027 Score=73.44 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=67.2
Q ss_pred CCcccEeeecCCCCCccCCCCCCCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCCCCC---CCccccce
Q 000471 1312 LTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPP---FPASLTNL 1388 (1472)
Q Consensus 1312 l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~~L~~L 1388 (1472)
+.+.+.|+++|| .+..|..-..++.|++|.|+-|++...- .|..|+.|++|+|..||+....-.. .+++|++|
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456777888888 4555544456788888888888886644 4788888888888887764322211 35678888
Q ss_pred eccCCCCcCcccccC-----CCCCcCceee
Q 000471 1389 WISDMPDLESISSIG-----ENLTSLETLR 1413 (1472)
Q Consensus 1389 ~l~~~~~l~~i~~~~-----~~l~~L~~L~ 1413 (1472)
.|..||..+.-+... .-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888766555433 4577777774
No 234
>PRK07261 topology modulation protein; Provisional
Probab=96.19 E-value=0.01 Score=61.15 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.|.|+|++|+||||||+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 235
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.055 Score=55.69 Aligned_cols=191 Identities=17% Similarity=0.182 Sum_probs=97.5
Q ss_pred ceeec-hhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHH
Q 000471 187 KVYGR-EKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 258 (1472)
Q Consensus 187 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1472)
++||+ ++.+++|.+.+.-+-. -+-.+++-|.++|++|.|||-||++|+++ ....|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 35554 5555555554321110 03345677889999999999999999963 34556667654
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH--------------hhHHhhcccccC--CCC
Q 000471 259 RISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY--------------IRWSELRCPFVA--GAA 322 (1472)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 322 (1472)
++.+...++ ...-..++.-+-++ .-+..|..|.+++... ...-++...+.. ..+
T Consensus 216 ----elvqk~ige---gsrmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ----ELVQKYIGE---GSRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred ----HHHHHHhhh---hHHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 222222221 11222233333332 3567888888755311 011122222322 235
Q ss_pred CcEEEEEcCChHHHHhh-----CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 323 GSKIVVTTRNLVVAERM-----GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 323 ~s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
.-+||.+|..-++.... ..+.-++..+-+++.-.++++-+.-. .+....-+++.+|+++....|.---++.+=|
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk-mnl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK-MNLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh-hchhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 67888877765544322 22344667777776667777665422 2222233455555554433333333444444
Q ss_pred hh
Q 000471 398 GL 399 (1472)
Q Consensus 398 ~~ 399 (1472)
++
T Consensus 365 gm 366 (404)
T KOG0728|consen 365 GM 366 (404)
T ss_pred hH
Confidence 43
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.05 Score=62.07 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHhh-CCCCceeCCCCChHhHHHHHHhh
Q 000471 292 GNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-GADPVYQLKELSDDDCLCVLTQI 362 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 362 (1472)
+++-++|+|++...+...-..+...+.....+..+|++|.+.. +.... ..-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4444556788877665554455444443334566777777654 33222 22356889999999998888653
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.04 E-value=0.0069 Score=68.86 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=53.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
..+.++|..|+|||.||.++++.. ...-..++++++. ++...+...-. . ...+.... + +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~------~l~~~l~~~~~-~---~~~~~~~~---~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD------ELIEILREIRF-N---NDKELEEV---Y-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH------HHHHHHHHHHh-c---cchhHHHH---H-HHhc-c
Confidence 568999999999999999999843 2222345565542 23333322111 1 11111111 2 2222 2
Q ss_pred eEEEEEeCCCCCCHhhHH--hhcccccCC-CCCcEEEEEcCC
Q 000471 294 KFLLVLDDVWNENYIRWS--ELRCPFVAG-AAGSKIVVTTRN 332 (1472)
Q Consensus 294 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~~s~iivTtR~ 332 (1472)
-=||||||+.......|. .+...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 248999999665433332 222222211 234568888875
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.058 Score=61.35 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=48.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC-CCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-FDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
+.++|+++|++|+||||++..++... ..+-..+..++.... ....+-++...+.++.+.. ...+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHHH
Confidence 45899999999999999999998632 222123444544322 1122223333333333221 1234445555554432
Q ss_pred CC-CeEEEEEeCCCCC
Q 000471 291 SG-NKFLLVLDDVWNE 305 (1472)
Q Consensus 291 ~~-k~~LlVlDdv~~~ 305 (1472)
.. +.=+|++|-....
T Consensus 317 ~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 317 EEARVDYILIDTAGKN 332 (436)
T ss_pred hccCCCEEEEeCcccc
Confidence 21 2347788877543
No 239
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.02 E-value=0.018 Score=60.44 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=50.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC-CCCHHHHHHHHHHhhcCCCC---CCcccHHHHHHHHHh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE-DFDVFRISKSILNSVASDQC---KDKDDLNLLQEKLKK 288 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~l~~ 288 (1472)
++|+.++|+.|+||||.+.+++..... +-..+..++... .....+-++..++.++.+.. ...+..+.+.+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 479999999999999998888764332 233456666532 23455666777777765421 111223333334443
Q ss_pred hhCCCeEEEEEeCCCC
Q 000471 289 QLSGNKFLLVLDDVWN 304 (1472)
Q Consensus 289 ~l~~k~~LlVlDdv~~ 304 (1472)
.-..+.=+|++|=...
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3222334777776643
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.02 E-value=0.048 Score=70.65 Aligned_cols=180 Identities=16% Similarity=0.115 Sum_probs=92.3
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 258 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1472)
.++.|.++.++++.+++...-. -+-...+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 3588999999998887642100 01123466889999999999999999873 22222 222211
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH-----------hhHHhhcccccCC-CCCcEE
Q 000471 259 RISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY-----------IRWSELRCPFVAG-AAGSKI 326 (1472)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~~s~i 326 (1472)
. +.... .......+...+.......+.+|++|+++.... .....+...+... ..+..+
T Consensus 247 ~----i~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 E----IMSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred H----Hhccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 1 11110 011122233344444456678999999854210 0111222222211 123334
Q ss_pred EE-EcCChH-HHHhh----CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh
Q 000471 327 VV-TTRNLV-VAERM----GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL 391 (1472)
Q Consensus 327 iv-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 391 (1472)
+| ||.... +...+ .-...+.+...+.++-.+++....-+. ....+ ....++++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCCH
Confidence 44 555432 11111 113456777778888888887554221 11111 224667778877653
No 241
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.01 E-value=0.063 Score=56.67 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=111.3
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCc----chhccCcceEEEEecCC---------
Q 000471 188 VYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDD----RVQRHYEIKAWTCVSED--------- 254 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~--------- 254 (1472)
+.++++....+...... ++..-..++|+.|.||-|.+..+.+.. -.+-+-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 66777777777766532 346778899999999999876655421 11112234445443332
Q ss_pred -C-----------CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeE-EEEEeCCCCCCHhhHHhhcccccCCC
Q 000471 255 -F-----------DVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKF-LLVLDDVWNENYIRWSELRCPFVAGA 321 (1472)
Q Consensus 255 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 321 (1472)
+ .-+.+.+++++++..... ++ .-..+.| ++|+-.++.-..+.-..++.-...-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 112233333333322111 00 0012334 66676666544444444555444445
Q ss_pred CCcEEEEEcCCh--HHHHhhCCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh-hHHHHHHh
Q 000471 322 AGSKIVVTTRNL--VVAERMGADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP-LAAKTLGG 398 (1472)
Q Consensus 322 ~~s~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~~~ 398 (1472)
..+|+|+...+. -+...-...-.+++...+++|....+++.+-..+- .. | .+++.+|+++++|.- .|+-++-.
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~l-p--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QL-P--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cC-c--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 677887754321 11111112235789999999999999887743321 11 2 689999999998864 34433322
Q ss_pred hhcCC-C--------ChhhHHHHHhhc
Q 000471 399 LLRGR-D--------DPRDWEFVLKTD 416 (1472)
Q Consensus 399 ~L~~~-~--------~~~~w~~~~~~~ 416 (1472)
.-..+ + ...+|+.+..+.
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHH
Confidence 21111 0 145788777653
No 242
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.075 Score=63.34 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=83.9
Q ss_pred ceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
++=|.|+-+.+|-+...-.-. -+-..++-|..+|++|.|||++|+++++. .+..| +.+...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp----- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP----- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH-----
Confidence 455566666555544322110 02345678899999999999999999983 33334 222221
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhh-----------HHhhcccccCCCC--CcEE
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIR-----------WSELRCPFVAGAA--GSKI 326 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-----------~~~l~~~l~~~~~--~s~i 326 (1472)
+++....+ .....+.+.+++.=+-.+.+|.||.++...... ...+..-+..... +--|
T Consensus 503 ---EL~sk~vG------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ---ELFSKYVG------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ---HHHHHhcC------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 11111111 122233333333333456788888775431110 1122222222222 2223
Q ss_pred EEEcCChHHHH-h-hC---CCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHH
Q 000471 327 VVTTRNLVVAE-R-MG---ADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGE 380 (1472)
Q Consensus 327 ivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~ 380 (1472)
|-.|..++... . +. -+.++.++.-+.+.-.++|+.++-+.. ..+.-+++++|+
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp-~~~~vdl~~La~ 631 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP-FSEDVDLEELAQ 631 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC-CCccccHHHHHH
Confidence 33344333222 1 22 345666666666666789998874432 223334454443
No 243
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.019 Score=71.10 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=73.0
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC---cceEEEEecCCCCHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLR---GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY---EIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 259 (1472)
..++|-+..++.+.+.+.....+ ......+...+|+.|||||-||++++.. -| +..+-++.|+-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 46999999999999998754321 2234568888999999999999998862 23 2333333332211
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeE-EEEEeCCCCCCHhhHHhhcccccC
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKF-LLVLDDVWNENYIRWSELRCPFVA 319 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~ 319 (1472)
+.-...+-+..+. -...++ --.+-+..+.++| +|.||++...+++-.+-+..-+.+
T Consensus 563 --kHsVSrLIGaPPG-YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 --KHSVSRLIGAPPG-YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred --HHHHHHHhCCCCC-Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1122333332221 111111 1234444556777 889999988887766666665544
No 244
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.99 E-value=0.013 Score=65.84 Aligned_cols=86 Identities=23% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCC----CCcccHHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQC----KDKDDLNLLQEKL 286 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1472)
+.-+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .+++++.+.. ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45689999999999999999998753 33445568899988877753 2333332210 0223344445555
Q ss_pred HhhhC-CCeEEEEEeCCC
Q 000471 287 KKQLS-GNKFLLVLDDVW 303 (1472)
Q Consensus 287 ~~~l~-~k~~LlVlDdv~ 303 (1472)
....+ +.--+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 345699999974
No 245
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.99 E-value=0.026 Score=73.71 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=75.4
Q ss_pred CceeechhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL---RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
..++|-+..++.+.+.+..... .......++.++|+.|+|||+||+.+++. .-..-...+-++.++-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHH
Confidence 4689999999999888863221 01122356778999999999999999862 111112233344433222111111
Q ss_pred HHHHhhcCCC-CCCcccHHHHHHHHHhhhCCCe-EEEEEeCCCCCCHhhHHhhcccccCC-----------CCCcEEEEE
Q 000471 263 SILNSVASDQ-CKDKDDLNLLQEKLKKQLSGNK-FLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVVT 329 (1472)
Q Consensus 263 ~i~~~l~~~~-~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iivT 329 (1472)
-++.+. .........+. +.++.++ -+++||+++..+...+..+...+..+ ...+-||+|
T Consensus 587 ----l~g~~~gyvg~~~~~~l~----~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 ----LIGSPPGYVGYNEGGQLT----EAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ----hcCCCCcccCcCccchHH----HHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 112111 10111122233 3333343 58999999888776677666655432 234556777
Q ss_pred cCC
Q 000471 330 TRN 332 (1472)
Q Consensus 330 tR~ 332 (1472)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.98 E-value=0.014 Score=65.63 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCC----CCcccHHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQC----KDKDDLNLLQEKL 286 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1472)
..-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++.+.. ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999988763 33344567899888776653 2344433211 0223344445555
Q ss_pred HhhhC-CCeEEEEEeCCC
Q 000471 287 KKQLS-GNKFLLVLDDVW 303 (1472)
Q Consensus 287 ~~~l~-~k~~LlVlDdv~ 303 (1472)
....+ +..-+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 54443 456699999984
No 247
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0031 Score=39.17 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=12.7
Q ss_pred cCcEEecCCccccccchhhhh
Q 000471 623 HLRCLNLSRTRIQILPESINS 643 (1472)
Q Consensus 623 ~Lr~L~L~~~~i~~lP~~i~~ 643 (1472)
+|++|||++|+|+.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665544
No 248
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.96 E-value=0.087 Score=68.30 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=94.6
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 258 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1472)
.++.|.+..++++.+.+.-.-. .+-...+-+.++|++|.|||++|+++++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH----
Confidence 4578888888877776532100 011234558899999999999999999742 2222 222211
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH------------hhHHhhcccccC--CCCCc
Q 000471 259 RISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY------------IRWSELRCPFVA--GAAGS 324 (1472)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------------~~~~~l~~~l~~--~~~~s 324 (1472)
+++....+ .....+...+...-...+.+|++|+++.... .....+...+.. ...+-
T Consensus 522 ----~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111111 1122233333333346679999999854210 001112222221 12344
Q ss_pred EEEEEcCChHHHHhh-----CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCCh
Q 000471 325 KIVVTTRNLVVAERM-----GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 325 ~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 390 (1472)
-||.||...+..... .-+..+.+...+.++-.++|+.+.-+. ......+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 566677665433221 234567888888888888887665322 1122222 345667777654
No 249
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.91 E-value=0.04 Score=60.24 Aligned_cols=91 Identities=19% Similarity=0.073 Sum_probs=54.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccC------cceEEEEecCCCCHHHHHHHHHHhhcCCCC--------CCc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY------EIKAWTCVSEDFDVFRISKSILNSVASDQC--------KDK 276 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~ 276 (1472)
..-.++.|+|.+|+|||++|.+++... .... ..++|++....++...+. ++.+....... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 456799999999999999999987532 1222 457899988777765543 33333221100 011
Q ss_pred ccHHHHHHHHHhhhC----CCeEEEEEeCCCC
Q 000471 277 DDLNLLQEKLKKQLS----GNKFLLVLDDVWN 304 (1472)
Q Consensus 277 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 304 (1472)
.+.+++...+.+... .+.-++|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 234444444444332 3445889998843
No 250
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.87 E-value=0.018 Score=58.67 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=32.4
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 188 VYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
+||....+.++.+.+..-. ... .-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh---CCC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 4788888888888776542 122 34669999999999999999973
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.86 E-value=0.037 Score=60.00 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=32.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD 256 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1472)
..-+++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45689999999999999999998863 223334577887665554
No 252
>PRK09354 recA recombinase A; Provisional
Probab=95.85 E-value=0.019 Score=65.11 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCC----CCcccHHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQC----KDKDDLNLLQEKL 286 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1472)
..-+++-|+|++|+||||||.+++.. ....-..++||+..+.++.. .+++++.+.. ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33445678999998888763 3344433210 0223344445555
Q ss_pred HhhhC-CCeEEEEEeCCC
Q 000471 287 KKQLS-GNKFLLVLDDVW 303 (1472)
Q Consensus 287 ~~~l~-~k~~LlVlDdv~ 303 (1472)
...++ +.--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55443 445699999984
No 253
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.84 E-value=0.0058 Score=72.29 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=40.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433222334567999999999999999999986
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.83 E-value=0.0081 Score=59.51 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=59.5
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcch-hccCcceEEEEecCCCCHHHHHHHHHHh
Q 000471 189 YGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHYEIKAWTCVSEDFDVFRISKSILNS 267 (1472)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 267 (1472)
||+-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|... .+... .
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----------
Confidence 466666777766665421 12345789999999999999988864221 1122110 11110 0
Q ss_pred hcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccC-CCCCcEEEEEcCC
Q 000471 268 VASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVA-GAAGSKIVVTTRN 332 (1472)
Q Consensus 268 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s~iivTtR~ 332 (1472)
.+.+.+. +.--|+++|++.-.......+...+.. .....|+|.||+.
T Consensus 62 ---------------~~~l~~a---~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 ---------------AELLEQA---KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------------HHHHHHC---TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------------HHHHHHc---CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1111111 334577999988765555556555542 2567899999985
No 255
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.82 E-value=0.006 Score=58.98 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
||+|.|++|+||||+|+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 256
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.82 E-value=0.021 Score=62.92 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=39.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchh----ccCcceEEEEecCCCCHHHHHHHHHHhh
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHYEIKAWTCVSEDFDVFRISKSILNSV 268 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1472)
...+.=|+|.+|+|||.|+.+++-..... +.=..++|++....|+..++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 45699999999999999998876422221 122458999999999887775 466554
No 257
>PHA02244 ATPase-like protein
Probab=95.76 E-value=0.073 Score=60.28 Aligned_cols=42 Identities=14% Similarity=0.281 Sum_probs=29.0
Q ss_pred ceeechhH----HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 187 KVYGREKE----KEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 187 ~~vGr~~~----~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.++|.... ...+.+++... .-|.|+|++|+|||++|+++++.
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 36665433 44555555332 23678999999999999999873
No 258
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.76 E-value=0.02 Score=62.37 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=52.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCc-ceEEEEecCCC-CHHHHHHHHHHhhcCC-------CCCCcccHH---
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYE-IKAWTCVSEDF-DVFRISKSILNSVASD-------QCKDKDDLN--- 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 280 (1472)
-.-++|+|.+|+||||||+++++. .+.+|+ .++++-+++.. .+.++..++.+.=... ...+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999999984 444454 44556666654 3455555554421110 010111111
Q ss_pred -HHHHHHHhhh---CCCeEEEEEeCCC
Q 000471 281 -LLQEKLKKQL---SGNKFLLVLDDVW 303 (1472)
Q Consensus 281 -~~~~~l~~~l---~~k~~LlVlDdv~ 303 (1472)
...-.+.+++ +++.+|+|+||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122344444 3889999999983
No 259
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.75 E-value=0.019 Score=59.83 Aligned_cols=36 Identities=36% Similarity=0.557 Sum_probs=27.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEE
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWT 249 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 249 (1472)
...+|.+.|+.|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 344455555555
No 260
>PRK06696 uridine kinase; Validated
Probab=95.74 E-value=0.012 Score=63.92 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=35.4
Q ss_pred echhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 190 GREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.|++-+++|.+.+... ..+...+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4677788888888653 234678999999999999999999986
No 261
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.72 E-value=0.047 Score=65.62 Aligned_cols=180 Identities=12% Similarity=0.068 Sum_probs=90.0
Q ss_pred CceeechhHHHHHHHHHhc---C-CCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLN---D-DLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRIS 261 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1472)
.++.|.+..++.+.+.... . ..-+-...+-|.++|++|.|||.+|+++++.. ...| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH--------
Confidence 3577877666655543211 0 00012345678899999999999999998732 2121 1122111
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH-------h-h----HHhhcccccCCCCCcEEEEE
Q 000471 262 KSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY-------I-R----WSELRCPFVAGAAGSKIVVT 329 (1472)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~-~----~~~l~~~l~~~~~~s~iivT 329 (1472)
+..... ......+.+.+...-...+++|++|+++..-. . . ...+...+.....+--||.|
T Consensus 295 --l~~~~v------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 --LFGGIV------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred --hccccc------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111110 11122223333333335789999999964210 0 0 01111112222334446667
Q ss_pred cCChHH-----HHhhCCCCceeCCCCChHhHHHHHHhhhcCCCC-CCCCccHHHHHHHHHHHhCCCh
Q 000471 330 TRNLVV-----AERMGADPVYQLKELSDDDCLCVLTQISLGARD-FTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 330 tR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~~~glP 390 (1472)
|...+. .+...-+..+.++.-+.++-.++|+.+..+... .....+ ...+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 765532 111123456788888888888899887643221 111122 345666666543
No 262
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.72 E-value=0.014 Score=58.68 Aligned_cols=93 Identities=22% Similarity=0.199 Sum_probs=68.5
Q ss_pred HhccCCCCCCCCeEEEEeeCCCCCCcccCCCCcccccEEEEcCCCC---CCCCCCCCCCCccceeecCCCCceEeCcccc
Q 000471 773 VLSVLKPHRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTS---TSLPSVGQLPFLKELRISGMDGVKSVGSEFY 849 (1472)
Q Consensus 773 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~---~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~ 849 (1472)
..+.|..++.|..|.+.+|.++.+..-+.. .+++|..|.|.+|.+ .++.++..+|.|++|.+-+|+.-..-....+
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 456677788999999999999988776653 578999999999998 5667788999999999988764332221111
Q ss_pred CCCCCCCCCCccEEeccCcc
Q 000471 850 GNSRSVPFPSLETLSFFDMR 869 (1472)
Q Consensus 850 ~~~~~~~fp~L~~L~l~~~~ 869 (1472)
- ...+|+|+.|++.+..
T Consensus 135 v---l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 135 V---LYKLPSLRTLDFQKVT 151 (233)
T ss_pred E---EEecCcceEeehhhhh
Confidence 1 1237777777777654
No 263
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.14 Score=63.27 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=99.5
Q ss_pred CceeechhHH---HHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 186 AKVYGREKEK---EEIIELLLNDDL---RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~~~---~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
.++.|-|+.+ +++++.|..++. -+..-++=|.++|++|.|||-||++++-...+ =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 4688887655 555566654321 12234677889999999999999999985433 23445443
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH---------------hhHHhhcccccCCCCCc
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY---------------IRWSELRCPFVAGAAGS 324 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~~~~s 324 (1472)
+.++-+.+.. .....+.+...=...+..|.+|+++.... ..+.++..-+.....+.
T Consensus 379 ---EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222211 11112222222235678888888754311 11222222222222222
Q ss_pred --EEEEEcCChHHHHhh-----CCCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhH
Q 000471 325 --KIVVTTRNLVVAERM-----GADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLA 392 (1472)
Q Consensus 325 --~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 392 (1472)
-+|-+|+..++.... .-+..+.++.-+...-.++|..++-..... .+..++++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 333456665544321 223567788888888888998887433221 23355666 88888887744
No 264
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.63 E-value=0.019 Score=64.26 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 265
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.62 E-value=0.024 Score=67.73 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=53.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
+..++..++|++|+||||||..|+++.- | .++=|++|+.-+...+-..|...+......+ -
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------A 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc--------------c
Confidence 4568999999999999999999987432 2 3556777777776666666655554332200 0
Q ss_pred CCCeEEEEEeCCCCCC
Q 000471 291 SGNKFLLVLDDVWNEN 306 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~~~ 306 (1472)
.+++.-+|+|.++-..
T Consensus 385 dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCCcceEEEecccCCc
Confidence 2678889999997764
No 266
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.26 Score=58.07 Aligned_cols=155 Identities=16% Similarity=0.264 Sum_probs=88.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
+.-|.+||++|.|||-||++|+|. .+..| +++-+. +++...-+ .....+...+.+.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhh------hHHHHHHHHHHHhhcC
Confidence 456789999999999999999994 33344 344332 22222111 2223333444444457
Q ss_pred CeEEEEEeCCCCCCH-----hh------HHhhcccccC--CCCCcEEEEEcCChHHHHhh--C---CCCceeCCCCChHh
Q 000471 293 NKFLLVLDDVWNENY-----IR------WSELRCPFVA--GAAGSKIVVTTRNLVVAERM--G---ADPVYQLKELSDDD 354 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~-----~~------~~~l~~~l~~--~~~~s~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~ 354 (1472)
.+++|.||.++..-. .. ..++..-+.. ...|--||-.|..+++.... . -+...-+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 799999999855211 11 1122222221 23566778777777654321 2 23456677778888
Q ss_pred HHHHHHhhhcCCCC-CCCCccHHHHHHHHHHHhCCCh
Q 000471 355 CLCVLTQISLGARD-FTRHLSLKEVGEQIVIKCGGLP 390 (1472)
Q Consensus 355 ~~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~~~glP 390 (1472)
-.++++...-.... ...+-++.++|+. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888887742111 2334466666654 4566654
No 267
>PRK13695 putative NTPase; Provisional
Probab=95.56 E-value=0.022 Score=59.17 Aligned_cols=22 Identities=45% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 268
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.56 E-value=0.0055 Score=60.94 Aligned_cols=85 Identities=21% Similarity=0.067 Sum_probs=45.2
Q ss_pred EEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeE
Q 000471 216 ISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKF 295 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 295 (1472)
|.++|++|+|||+||+.+++. .. ....-+.++...+..++....--. ... .......+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~---~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ---FEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT---TCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc---cccccccccccc-----ccee
Confidence 679999999999999999863 21 122346677777766554332111 000 000000000001 1789
Q ss_pred EEEEeCCCCCCHhhHHhhc
Q 000471 296 LLVLDDVWNENYIRWSELR 314 (1472)
Q Consensus 296 LlVlDdv~~~~~~~~~~l~ 314 (1472)
++|||++......-+..+.
T Consensus 68 il~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLL 86 (139)
T ss_dssp EEEESSCGG--HHHHHTTH
T ss_pred EEEECCcccCCHHHHHHHH
Confidence 9999999866544444443
No 269
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0014 Score=68.45 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=67.4
Q ss_pred cCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhh--hhhcccCCCce
Q 000471 596 HLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLC--KDMGNLRKLHH 673 (1472)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~ 673 (1472)
.+.+.+.|++-|| .+..+ .-+.+|+.|++|.||-|.|+.| ..+..+++|+.|.|+.| .+..+. .-+.+|++||.
T Consensus 17 dl~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCC-CccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3455666777777 66666 2345677777777777777777 45677777777777763 344432 23667888888
Q ss_pred eecCCCCCcccCCCc-----ccccccccccCceEec
Q 000471 674 LRNSTANSLKEMPKG-----FGKLTSLLTLGRFVVG 704 (1472)
Q Consensus 674 L~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~~ 704 (1472)
|.+..|.-...-+.. +.-|++|++|+...+.
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 888777644444432 5567777777654443
No 270
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.53 E-value=0.035 Score=62.91 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=42.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchh----ccCcceEEEEecCCCCHHHHHHHHHHhhcC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHYEIKAWTCVSEDFDVFRISKSILNSVAS 270 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1472)
..-+++-|+|++|+|||+++.+++-..... ..=..++||+..+.|+++++.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 456899999999999999998876321111 1124689999999998887754 5565544
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.038 Score=60.67 Aligned_cols=81 Identities=23% Similarity=0.222 Sum_probs=48.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
..-+.++|.+|+|||.||.++.++.- ..--.+.+++ ..+++.++....... . ....+.+.+ .
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~------~~el~~~Lk~~~~~~-----~----~~~~l~~~l-~ 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFIT------APDLLSKLKAAFDEG-----R----LEEKLLREL-K 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhcC-----c----hHHHHHHHh-h
Confidence 34688999999999999999998543 2222344553 445555555544431 1 112222222 1
Q ss_pred CeEEEEEeCCCCCCHhhHH
Q 000471 293 NKFLLVLDDVWNENYIRWS 311 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~~~~~ 311 (1472)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2248999999776544444
No 272
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.50 E-value=0.062 Score=58.94 Aligned_cols=93 Identities=24% Similarity=0.161 Sum_probs=60.3
Q ss_pred CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHh-h---cCCCCCCcccHHHHHH
Q 000471 209 GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNS-V---ASDQCKDKDDLNLLQE 284 (1472)
Q Consensus 209 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l---~~~~~~~~~~~~~~~~ 284 (1472)
+-+..+++=|+|+.|.||||+|.+++- ..+..-..++|++....+++..+.. +... + ............++.+
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHH
Confidence 345678999999999999999998875 3444445789999999999876543 3333 2 2122212223333444
Q ss_pred HHHhhhCCCeEEEEEeCCCC
Q 000471 285 KLKKQLSGNKFLLVLDDVWN 304 (1472)
Q Consensus 285 ~l~~~l~~k~~LlVlDdv~~ 304 (1472)
.+.+....+--|+|+|-+-.
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHhccCCCCEEEEecCcc
Confidence 44444444456999998843
No 273
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.49 E-value=0.043 Score=61.64 Aligned_cols=88 Identities=19% Similarity=0.119 Sum_probs=46.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC-CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF-DVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
..++++|+|++|+||||++..++.....+..-..+..|+..... ...+.+....+.++.+.. ...+...+...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc-
Confidence 46799999999999999999887633222111234555543211 122223333333333221 223334444444443
Q ss_pred CCCeEEEEEeCC
Q 000471 291 SGNKFLLVLDDV 302 (1472)
Q Consensus 291 ~~k~~LlVlDdv 302 (1472)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777754
No 274
>PRK06762 hypothetical protein; Provisional
Probab=95.46 E-value=0.099 Score=53.80 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 275
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.31 Score=50.67 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=37.4
Q ss_pred ceeechhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 187 KVYGREKEKEEIIELLLNDDLR-------GDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
++-|-++.++++++.+.-.-.. +-..++-|..+|++|.|||-+|++.+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 5778999999999887532210 223456788999999999999999876
No 276
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.45 E-value=0.049 Score=69.19 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=67.3
Q ss_pred CceeechhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLR---GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
..++|-++.++.+.+.+.....+ .......+.++|+.|+|||++|+.++... . ...+.+++++-.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhccccc---
Confidence 35899999999999988632110 11234578899999999999999998632 1 2234445443222111
Q ss_pred HHHHhhcCCCCC--CcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhccccc
Q 000471 263 SILNSVASDQCK--DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFV 318 (1472)
Q Consensus 263 ~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 318 (1472)
...+.+.... .......+.+.+++ ...-+|+||+++..+..-+..+...+.
T Consensus 530 --~~~LiG~~~gyvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCCCcccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1222221110 01111122222222 234699999998877666666655443
No 277
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.44 E-value=0.089 Score=54.14 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=63.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCc---chhcc---Cc--ceEEEEecCCCCHHHHHHHHHHhhcCCCC---CC---ccc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDD---RVQRH---YE--IKAWTCVSEDFDVFRISKSILNSVASDQC---KD---KDD 278 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~---~~~ 278 (1472)
-.+++|+|+.|.|||||.+.+..+. ++... |. ...|+ .+ .+.++.++.... .. ...
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999886321 11111 10 12232 11 345555554321 01 111
Q ss_pred HHHHHHHHHhhhCCC--eEEEEEeCCCCC-CHhhHHhhcccccCC-CCCcEEEEEcCChHHHHhhCCCCceeC
Q 000471 279 LNLLQEKLKKQLSGN--KFLLVLDDVWNE-NYIRWSELRCPFVAG-AAGSKIVVTTRNLVVAERMGADPVYQL 347 (1472)
Q Consensus 279 ~~~~~~~l~~~l~~k--~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~~s~iivTtR~~~v~~~~~~~~~~~l 347 (1472)
-+...-.+.+.+-.+ +-++++|+.-.. +....+.+...+... ..|..||++|.+.+.... ++.++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122223344455556 678888987442 222223333322221 246678888888776542 4444444
No 278
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.42 E-value=0.057 Score=62.10 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhc----cCcceEEEEecCCCCHHHHHHHHHHhhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFRISKSILNSVA 269 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1472)
....++-|+|++|+|||++|.+++....... .=..++||+..+.+++.++.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 3467999999999999999999875322111 114789999999888877654 344443
No 279
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.72 Score=51.86 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=88.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcc--------hhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDR--------VQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQE 284 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 284 (1472)
..+..++|..|.||+++|+.+.+..- ...|-+...+++..+ .....+++.+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---------------------~~i~vd~Ir~ 76 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---------------------KDLSKSEFLS 76 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---------------------CcCCHHHHHH
Confidence 45677999999999999998876320 011111222222111 1112222222
Q ss_pred HHHhh----h-CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCC-hHHHHh-hCCCCceeCCCCChHhHHH
Q 000471 285 KLKKQ----L-SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVAER-MGADPVYQLKELSDDDCLC 357 (1472)
Q Consensus 285 ~l~~~----l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~ 357 (1472)
...+. . .+++-++|+||+..........+...+.....++.+|++|.. ..+... .....++++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 22211 1 147788999999777665666677766666667777765544 333332 2345678999999999987
Q ss_pred HHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHH
Q 000471 358 VLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTL 396 (1472)
Q Consensus 358 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 396 (1472)
.+... + . + ++.+..++...+|.=-|+..+
T Consensus 157 ~l~~~--~-~---~----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 157 KLLSK--N-K---E----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHc--C-C---C----hhHHHHHHHHcCCHHHHHHHH
Confidence 77653 1 1 1 244666777777633455553
No 280
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.40 E-value=0.011 Score=62.12 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCcccEeeecCCCCCccCCCCCCCCCcceeEeccc--cCCCCCCccccccccccceeeeccCCCC-CCCCCCC--Cccc
Q 000471 1311 NLTSLLILEIRGCPSVVSFPEDGFPTNLQSLEVRGL--KISKPLPEWGFNRFTSLRRFTICGGCPD-LVSPPPF--PASL 1385 (1472)
Q Consensus 1311 ~l~~L~~L~L~~n~~l~~~p~~~~~~~L~~L~l~~n--~~~~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~~~~~--~~~L 1385 (1472)
.+..|+.|++.++ .++++.....+++|+.|.++.| .+.+.++. ...++++|++|++|+|.+. ..++... +.+|
T Consensus 41 ~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhcc-ceeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3334444444444 2333333334455555555555 33333332 3344456666666555544 2222221 3345
Q ss_pred cceeccCCC
Q 000471 1386 TNLWISDMP 1394 (1472)
Q Consensus 1386 ~~L~l~~~~ 1394 (1472)
..|++.+|+
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 555555553
No 281
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.39 E-value=0.042 Score=62.68 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=42.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcch----hccCcceEEEEecCCCCHHHHHHHHHHhhcC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRV----QRHYEIKAWTCVSEDFDVFRISKSILNSVAS 270 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1472)
...+++-|+|.+|+|||+|+.+++-.... .+.-..++||+..+.|++.++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45689999999999999999888632111 11224689999999999887655 5555544
No 282
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.025 Score=67.31 Aligned_cols=73 Identities=23% Similarity=0.209 Sum_probs=47.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC--CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF--DVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
..-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.-- ..+.+++. +...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~------------------l~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF------------------LNNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH------------------HHHHHHHHH
Confidence 35688999999999999999998543 4455556667765431 11122111 112233445
Q ss_pred CCCeEEEEEeCCCC
Q 000471 291 SGNKFLLVLDDVWN 304 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~ 304 (1472)
...+-+|||||++-
T Consensus 492 ~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDC 505 (952)
T ss_pred hhCCcEEEEcchhh
Confidence 56789999999943
No 283
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.097 Score=56.16 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcc-----hh------ccC---cceEEEEecCCCC------H----------------
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDR-----VQ------RHY---EIKAWTCVSEDFD------V---------------- 257 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~~~~~~------~---------------- 257 (1472)
.+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||.-...++ +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999986211 00 001 2345554221111 1
Q ss_pred ------HHHHHHHHHhhcCCCCC-----CcccHHHHHHHHHhhhCCCeEEEEEeCC----CCCCHhhHHhhcccccCCCC
Q 000471 258 ------FRISKSILNSVASDQCK-----DKDDLNLLQEKLKKQLSGNKFLLVLDDV----WNENYIRWSELRCPFVAGAA 322 (1472)
Q Consensus 258 ------~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~l~~~l~~~~~ 322 (1472)
.+...+.++.++..... +-..-+...-.+.+.|..++=|+|||.- +........++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 13344445544433211 1112233334567778888999999974 222233344444444433
Q ss_pred CcEEEEEcCChHHHHh
Q 000471 323 GSKIVVTTRNLVVAER 338 (1472)
Q Consensus 323 ~s~iivTtR~~~v~~~ 338 (1472)
|..||++|-+-.....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8889999988765443
No 284
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.052 Score=62.42 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=58.2
Q ss_pred Cceeechh---HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 186 AKVYGREK---EKEEIIELLLNDDL---RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
.++-|-|+ |+++|+++|.++.. -+..=++-|.++|++|.|||-||++|+....+- +|...+..|+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFd--- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFD--- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchh---
Confidence 35677764 56788888866432 022335678899999999999999999754332 2333333333
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCC
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWN 304 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 304 (1472)
+++-. .....+.+.+...-+.-+++|.+|.++.
T Consensus 375 ---Em~VG---------vGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 375 ---EMFVG---------VGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---hhhhc---------ccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11111 1112223333333345689999999855
No 285
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.31 E-value=0.076 Score=58.52 Aligned_cols=132 Identities=24% Similarity=0.284 Sum_probs=72.6
Q ss_pred eechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC-cchhccCcceEE----EEecCCCC-----HH
Q 000471 189 YGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND-DRVQRHYEIKAW----TCVSEDFD-----VF 258 (1472)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~w----v~~~~~~~-----~~ 258 (1472)
-+|..+-.--+++|..+ .+..|.+.|.+|.|||.||-+..=. ...++.|..++- |.++++.. .+
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34666666677778554 5789999999999999998655421 122344443321 33443321 11
Q ss_pred ----HHHHHHH---HhhcCCCCCCcccHHHHHHHH---------HhhhCCC---eEEEEEeCCCCCCHhhHHhhcccccC
Q 000471 259 ----RISKSIL---NSVASDQCKDKDDLNLLQEKL---------KKQLSGN---KFLLVLDDVWNENYIRWSELRCPFVA 319 (1472)
Q Consensus 259 ----~~~~~i~---~~l~~~~~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~ 319 (1472)
-..+.|. +.+..... .....+...+ ..+.+++ +-+||+|.+.+-...+...+.. .
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R 374 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---R 374 (436)
T ss_pred hhccchHHHHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---h
Confidence 1122222 22222211 1111121111 1223444 4699999998876666555544 4
Q ss_pred CCCCcEEEEEcCC
Q 000471 320 GAAGSKIVVTTRN 332 (1472)
Q Consensus 320 ~~~~s~iivTtR~ 332 (1472)
.+.||||+.|---
T Consensus 375 ~G~GsKIVl~gd~ 387 (436)
T COG1875 375 AGEGSKIVLTGDP 387 (436)
T ss_pred ccCCCEEEEcCCH
Confidence 5789999998753
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.29 E-value=0.06 Score=56.14 Aligned_cols=126 Identities=18% Similarity=0.141 Sum_probs=61.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcC--CC------------CCCcccH
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVAS--DQ------------CKDKDDL 279 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~------------~~~~~~~ 279 (1472)
.+++|+|+.|.|||||++.+..-.. .....+++.-. +.......+-..+.. +. ......-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5899999999999999999986422 11223332211 111110111111110 00 0001111
Q ss_pred HHHHHHHHhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCCCCCcEEEEEcCChHHHHhhCCCCceeC
Q 000471 280 NLLQEKLKKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMGADPVYQL 347 (1472)
Q Consensus 280 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 347 (1472)
+...-.+.+.+-.++-++++|+.... +....+.+...+.....+..||++|.+...... .+.++.+
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 22223345556677788999998543 212222222222222236678888888776643 3444433
No 287
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.26 E-value=0.065 Score=55.08 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=29.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD 256 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1472)
++.|+|++|+||||+|+.+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998732 22334577777765543
No 288
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.25 E-value=0.062 Score=61.14 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=40.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhc----cCcceEEEEecCCCCHHHHHHHHHHhhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFRISKSILNSVA 269 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1472)
....++.|+|.+|+||||||..++....... .-..++|++..+.++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3468999999999999999998874221111 1135699999888887764 44455443
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.05 Score=58.62 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=48.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCc--chhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDD--RVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
-|+|.++||+|.|||+|.++.+++. |....|....-+.+... .+......+ ...-+..+.+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE---SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE---SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh---hhhHHHHHHHHHHHHH
Confidence 4889999999999999999999865 34455555555544322 122222221 1233444555566666
Q ss_pred CCCe--EEEEEeCCCC
Q 000471 291 SGNK--FLLVLDDVWN 304 (1472)
Q Consensus 291 ~~k~--~LlVlDdv~~ 304 (1472)
.++. +.+.+|.|..
T Consensus 246 ~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVES 261 (423)
T ss_pred hCCCcEEEEEeHHHHH
Confidence 5543 4566788843
No 290
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.23 E-value=0.011 Score=62.15 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=56.1
Q ss_pred CCCCcceeEeccccCCCCCCccccccccccceeeeccCCCCCCC----CCCCCccccceeccCCCC--cCcccccCCCCC
Q 000471 1334 FPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS----PPPFPASLTNLWISDMPD--LESISSIGENLT 1407 (1472)
Q Consensus 1334 ~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~----~~~~~~~L~~L~l~~~~~--l~~i~~~~~~l~ 1407 (1472)
....|+.|++.++.++... .|-.+++|++|.+|.|...... +....++|++|+++.|.. +.+++ ....+.
T Consensus 41 ~~~~le~ls~~n~gltt~~---~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT---NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred cccchhhhhhhccceeecc---cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 3456777777776665432 3555677777777776333221 111246777777777732 22232 225666
Q ss_pred cCceeeccCCCCCCCCCCC-----CCccccceecccCC
Q 000471 1408 SLETLRLFNCPKLKYFPEQ-----GLPKSLSRLSIHNC 1440 (1472)
Q Consensus 1408 ~L~~L~l~~~~~l~~lp~~-----~~~~sL~~L~l~~c 1440 (1472)
+|..|++.+|.-.. +... ..+++|++||-.++
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 67777777664322 2221 23566777765554
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.20 E-value=0.12 Score=61.20 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=48.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC-CCCHHHHHHHHHHhhcCCCCC--CcccHHHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE-DFDVFRISKSILNSVASDQCK--DKDDLNLLQEKLK 287 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~ 287 (1472)
..+.+|.++|.+|+||||+|..++.... ..-..++.|++.. .....+.++.++.+++.+... ...+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 3578999999999999999999886332 2212333444322 122244455566665543221 1122222222222
Q ss_pred hhhCCCeEEEEEeCCCC
Q 000471 288 KQLSGNKFLLVLDDVWN 304 (1472)
Q Consensus 288 ~~l~~k~~LlVlDdv~~ 304 (1472)
+...+. -+||+|..-.
T Consensus 171 ~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 171 EKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHhhcC-CEEEEECCCc
Confidence 233333 5688888743
No 292
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.19 E-value=0.11 Score=52.40 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=61.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceE---EEEecCCCCHHHHHHHHHHhhcCC---C------CCCccc---
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKA---WTCVSEDFDVFRISKSILNSVASD---Q------CKDKDD--- 278 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l~~~---~------~~~~~~--- 278 (1472)
..|-|++..|.||||.|..++- +...+=..++ |+...........+..+ .+... . .....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 5788888899999999977765 2222222232 22222222333333332 11100 0 000111
Q ss_pred HHHHHHHHHhhhCCCeE-EEEEeCCCCC---CHhhHHhhcccccCCCCCcEEEEEcCChH
Q 000471 279 LNLLQEKLKKQLSGNKF-LLVLDDVWNE---NYIRWSELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 279 ~~~~~~~l~~~l~~k~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
.....+..++.+...+| |+|||.+-.. .....+++...+.....+.-||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12233334555555444 9999998431 12334455555555556779999999863
No 293
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.18 E-value=0.031 Score=57.45 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999875
No 294
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.14 E-value=0.021 Score=60.34 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=54.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh---
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL--- 290 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--- 290 (1472)
+++.|.|++|.||||+++.+...... . ...+.+......-. ..+.+..+. ....+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~--~-g~~v~~~apT~~Aa----~~L~~~~~~----~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA--A-GKRVIGLAPTNKAA----KELREKTGI----EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH--T-T--EEEEESSHHHH----HHHHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh--C-CCeEEEECCcHHHH----HHHHHhhCc----chhhHHHHHhcCCcccccc
Confidence 68889999999999999988763222 2 12333332222122 223333221 1122221111100000
Q ss_pred ---CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH
Q 000471 291 ---SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 291 ---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
..++-+||+|++...+...+..+...... .|+|+|+.-=..+
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999988776677777665544 5778887754433
No 295
>PRK08233 hypothetical protein; Provisional
Probab=95.12 E-value=0.057 Score=56.65 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
..+|+|.|++|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999863
No 296
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.051 Score=67.47 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=83.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC-----cceEEEEecCCCCHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY-----EIKAWTCVSEDFDVFRIS 261 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~ 261 (1472)
.++||++|++++++.|..... ++ -.++|.+|||||++|.-++... +.+.- +..++.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K---NN---PvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s------------ 231 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK---NN---PVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS------------ 231 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC---CC---CeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE------------
Confidence 489999999999999976432 11 2367999999999987776521 11111 111110
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHhhh-CCCeEEEEEeCCCCCC--------HhhHHhhcccccCCCCCcEEEEEcCC
Q 000471 262 KSILNSVASDQCKDKDDLNLLQEKLKKQL-SGNKFLLVLDDVWNEN--------YIRWSELRCPFVAGAAGSKIVVTTRN 332 (1472)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~~s~iivTtR~ 332 (1472)
-++..-+.+.. -..+.++....+.+.+ +.++..+++|.+...- ..+-..+..|....+. -+.|-.|-.
T Consensus 232 LD~g~LvAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~ 308 (786)
T COG0542 232 LDLGSLVAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTL 308 (786)
T ss_pred ecHHHHhcccc--ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccH
Confidence 01111111111 2234444444444444 3558999999985420 0122222222222222 345544443
Q ss_pred hHHHHhh-------CCCCceeCCCCChHhHHHHHHhhh
Q 000471 333 LVVAERM-------GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 333 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
.+.-+.. ..-+.+.+..-+.+++..+++...
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 3332222 223567889999999999887654
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.056 Score=62.14 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=48.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC-CCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE-DFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLS 291 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1472)
..++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+.. ...+...+...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHHH-hc
Confidence 46899999999999999999986322111122345554322 12334445555555554322 11222223333333 34
Q ss_pred CCeEEEEEeCCCCC
Q 000471 292 GNKFLLVLDDVWNE 305 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~ 305 (1472)
++ -+|++|.....
T Consensus 215 ~~-DlVLIDTaG~~ 227 (374)
T PRK14722 215 NK-HMVLIDTIGMS 227 (374)
T ss_pred CC-CEEEEcCCCCC
Confidence 44 55669988543
No 298
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.019 Score=55.55 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 000471 214 SVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
--|+|.||+|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 45889999999999999999874
No 299
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.05 E-value=0.0072 Score=63.03 Aligned_cols=88 Identities=23% Similarity=0.220 Sum_probs=59.1
Q ss_pred cCCcceEEEecCCCCCcc-----CCcccCCCCcCcEEecCCcc---cc-ccc-------hhhhhcccccEEecCCCcchh
Q 000471 596 HLPRLRVFSLRGCGNIFN-----LPNEIGNLKHLRCLNLSRTR---IQ-ILP-------ESINSLYNLHTILLEDCHQLK 659 (1472)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~---i~-~lP-------~~i~~L~~L~~L~L~~~~~l~ 659 (1472)
.+..+..++|+|| .++. +-..|.+-.+|+.-+++.-. .. ++| +.+-++++||+.+||.|-.-.
T Consensus 28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4677888888888 5542 34556677788888877531 11 333 345677889999999876544
Q ss_pred hhhh----hhcccCCCceeecCCCCCcccC
Q 000471 660 KLCK----DMGNLRKLHHLRNSTANSLKEM 685 (1472)
Q Consensus 660 ~lp~----~i~~L~~L~~L~l~~~~~~~~~ 685 (1472)
..|+ -|++-+.|.||.+++|. +..+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 4443 36677889999998887 4433
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.01 E-value=0.18 Score=52.64 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=64.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC--CCCHHHHHH------HHHHhhcCCCC-----CCcccH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE--DFDVFRISK------SILNSVASDQC-----KDKDDL 279 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~------~i~~~l~~~~~-----~~~~~~ 279 (1472)
-.+++|+|+.|.|||||++.++... ......+++.-.. ..+...... ++++.++.... .....-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3589999999999999999998732 2233444432111 112212111 13444433211 011112
Q ss_pred HHHHHHHHhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCC-CC-CcEEEEEcCChHHHHh
Q 000471 280 NLLQEKLKKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAG-AA-GSKIVVTTRNLVVAER 338 (1472)
Q Consensus 280 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-~s~iivTtR~~~v~~~ 338 (1472)
+...-.+.+.+-..+-++++|+--.. +......+...+... .. +..||++|.+......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 22333455566677889999997442 222233333333221 12 5678888887765533
No 301
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.96 E-value=0.17 Score=50.34 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=56.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
-.+++|+|..|.|||||++.+..-.. .....+|+.... .+..-. +...-+...-.+.+.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999986422 223334432100 000000 011112222334555566
Q ss_pred CeEEEEEeCCCCC-CHhhHHhhcccccCCCCCcEEEEEcCChHHHHh
Q 000471 293 NKFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER 338 (1472)
Q Consensus 293 k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~ 338 (1472)
++-++++|+.... +......+...+... +..||++|.+.+....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 7778999987432 222333333333322 2468888877665543
No 302
>PTZ00035 Rad51 protein; Provisional
Probab=94.94 E-value=0.12 Score=59.48 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=40.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcch----hccCcceEEEEecCCCCHHHHHHHHHHhhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRV----QRHYEIKAWTCVSEDFDVFRISKSILNSVA 269 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1472)
....++.|+|.+|+|||||+..++-.... ...-..++|++....++.+++ .++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 45689999999999999999988743221 112235679998888877764 44455543
No 303
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.92 E-value=0.064 Score=61.74 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=70.5
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILN 266 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1472)
.++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++.... ..-...+.|++..-. ...+-..+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 489999999888888765421 223577999999999999999985211 111223445555432 2222222221
Q ss_pred hhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCC-----------CCcEEEEEcCC
Q 000471 267 SVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGA-----------AGSKIVVTTRN 332 (1472)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~iivTtR~ 332 (1472)
.-..... . . .......+. ....=.|+||||..........+...+..+. ...|||.||..
T Consensus 80 ~~~~~~~-g-~-~~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFT-G-A-QKRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccC-C-c-ccccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1100000 0 0 000001111 1223358899998876555556555443211 23688888764
No 304
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.91 E-value=0.1 Score=59.96 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchh----ccCcceEEEEecCCCCHHHHHHHHHHhhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHYEIKAWTCVSEDFDVFRISKSILNSVA 269 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1472)
....++-|+|.+|+||||++.+++...... ..=..++||+..+.++..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 346899999999999999999987542211 111368999999988887654 3444443
No 305
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.89 E-value=0.062 Score=60.25 Aligned_cols=87 Identities=23% Similarity=0.161 Sum_probs=52.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC----CcccHHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK----DKDDLNLLQEKL 286 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l 286 (1472)
+.-+++-|+|+.|+||||||.++.. ..+..-..++||+....+++.. +++++.+... .++..++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 4567999999999999999998886 3444456689999988887643 3444433211 122334444444
Q ss_pred HhhhC-CCeEEEEEeCCCC
Q 000471 287 KKQLS-GNKFLLVLDDVWN 304 (1472)
Q Consensus 287 ~~~l~-~k~~LlVlDdv~~ 304 (1472)
.+.++ +.--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 45444 3345899998844
No 306
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.88 E-value=0.21 Score=51.26 Aligned_cols=119 Identities=9% Similarity=-0.039 Sum_probs=58.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcch-hcc--Cc---ceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRV-QRH--YE---IKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKL 286 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 286 (1472)
-.+++|+|+.|.|||||++.+...... .+. ++ .+.++ .+..... ...+.+.+..........-+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccc--cccHHHHhhccCCCCCCHHHHHHHHH
Confidence 358999999999999999999864221 111 11 11222 2221111 01122222110111222223333345
Q ss_pred HhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCCCCCcEEEEEcCChHHHH
Q 000471 287 KKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAE 337 (1472)
Q Consensus 287 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~ 337 (1472)
.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5556667778889986432 112222232222222 356788887776553
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.15 Score=52.64 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=62.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC--CCHHHHHHHHHHhhcC--CCCC--C-------cccH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFRISKSILNSVAS--DQCK--D-------KDDL 279 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~--~~~~--~-------~~~~ 279 (1472)
-.+++|+|+.|.|||||.+.++.-.. .....+++.-... ...... ...+.. +... . ...-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 35899999999999999999987322 2233333321110 011111 111110 0000 0 0001
Q ss_pred HHHHHHHHhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCCCCCcEEEEEcCChHHHHhhCCCCceeC
Q 000471 280 NLLQEKLKKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMGADPVYQL 347 (1472)
Q Consensus 280 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 347 (1472)
+...-.+.+.+..++-++++|+-... +......+...+.....+..||++|.+.+.... ++.++.+
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222345556667789999997543 212222332322222235678888888776644 3444443
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.84 E-value=0.13 Score=56.47 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCC-----------------
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQC----------------- 273 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 273 (1472)
...+++.|+|.+|+|||++|.++... ...+=..++|++..+. ..++.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45679999999999999999998652 1123346788888654 34444443 22321110
Q ss_pred --CCcccHHHHHHHHHhhhCC-CeEEEEEeCCC
Q 000471 274 --KDKDDLNLLQEKLKKQLSG-NKFLLVLDDVW 303 (1472)
Q Consensus 274 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 303 (1472)
....+.+.+...+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334555666666543 55589999975
No 309
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.82 E-value=0.17 Score=60.14 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=46.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC-CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF-DVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLS 291 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1472)
.+++.++|++|+||||++..++........-..+..|+....- ...+-++...+.++.+.. ...+...+...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C
Confidence 4699999999999999988876532211222345566543321 111222222333333221 222334455555443 2
Q ss_pred CCeEEEEEeCCCC
Q 000471 292 GNKFLLVLDDVWN 304 (1472)
Q Consensus 292 ~k~~LlVlDdv~~ 304 (1472)
..=+||+|....
T Consensus 299 -~~DlVlIDt~G~ 310 (424)
T PRK05703 299 -DCDVILIDTAGR 310 (424)
T ss_pred -CCCEEEEeCCCC
Confidence 356888997643
No 310
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.78 E-value=0.13 Score=60.82 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.+.++.++|++|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999888876
No 311
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.12 Score=61.50 Aligned_cols=90 Identities=18% Similarity=0.076 Sum_probs=45.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC-CCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE-DFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
...+++|+|++|+||||++..+......+.....+..++... .....+.++.....++.... ...+...+...+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh-
Confidence 357999999999999999988875321111122344444322 11122222222233322211 222333444444433
Q ss_pred CCCeEEEEEeCCCC
Q 000471 291 SGNKFLLVLDDVWN 304 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~ 304 (1472)
. ..-+|++|....
T Consensus 427 ~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 R-DYKLVLIDTAGM 439 (559)
T ss_pred c-cCCEEEecCCCc
Confidence 3 345888898854
No 312
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.72 E-value=0.046 Score=58.52 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=58.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC--Cc----ccHHHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK--DK----DDLNLLQEKL 286 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~----~~~~~~~~~l 286 (1472)
.+++.|+|+.|.||||+.+.+...... .+-...+| +.. .. .....++...+...... .. .+...+...+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~--a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP--ADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE--cCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 378999999999999999998742111 11111222 111 00 01111222222221100 00 1111222111
Q ss_pred HhhhCCCeEEEEEeCCCCCCH-hhH----HhhcccccCC-CCCcEEEEEcCChHHHHhh
Q 000471 287 KKQLSGNKFLLVLDDVWNENY-IRW----SELRCPFVAG-AAGSKIVVTTRNLVVAERM 339 (1472)
Q Consensus 287 ~~~l~~k~~LlVlDdv~~~~~-~~~----~~l~~~l~~~-~~~s~iivTtR~~~v~~~~ 339 (1472)
.+..++.|+++|....... .+. ..+...+... ..+..+|+||-+.+++...
T Consensus 104 --~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 --RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred --HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2246789999999865421 111 1122223222 2345799999998887665
No 313
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.72 E-value=0.13 Score=58.73 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=42.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchh----ccCcceEEEEecCCCCHHHHHHHHHHhhcC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHYEIKAWTCVSEDFDVFRISKSILNSVAS 270 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1472)
....++-|+|.+|+|||++|..++-..... ..-..++|++..+.|+++++. ++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 346789999999999999998877422111 112368999999999887764 55665543
No 314
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.71 E-value=0.23 Score=61.89 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=72.2
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
...++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++... ..-...+.|++..-.. ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~~- 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLES- 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHHH-
Confidence 4569999999999888876532 1223567999999999999999987421 1111234455544322 22221
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCC-----------CCcEEEEEcCC
Q 000471 265 LNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGA-----------AGSKIVVTTRN 332 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~iivTtR~ 332 (1472)
.+.+........... ......-....-.|+||+|..........+...+..+. ...|||.||..
T Consensus 266 --~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 --ELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred --HHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 121111000000000 00000001234468899998876665666655443221 13588887754
No 315
>PRK00625 shikimate kinase; Provisional
Probab=94.71 E-value=0.22 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.|.++||+|+||||+|+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 316
>PRK10867 signal recognition particle protein; Provisional
Probab=94.70 E-value=0.13 Score=60.71 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
..+.+|.++|++|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998877765
No 317
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.69 E-value=0.097 Score=53.53 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=60.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC--CCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLS 291 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1472)
.+++|+|+.|.|||||.+.++... ......+++....- .+..+..+ ..++.-. +...-+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHHh
Confidence 589999999999999999998632 22334444432111 11111111 1111100 11112223334555566
Q ss_pred CCeEEEEEeCCCCC-CHhhHHhhcccccCC-CCCcEEEEEcCChHHHHh
Q 000471 292 GNKFLLVLDDVWNE-NYIRWSELRCPFVAG-AAGSKIVVTTRNLVVAER 338 (1472)
Q Consensus 292 ~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~~s~iivTtR~~~v~~~ 338 (1472)
.++-++++|+.-.. +......+...+... ..|..||++|.+......
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67788899997442 222233333333221 236678888888764443
No 318
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.067 Score=55.72 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=43.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCC-CCCCcccHHHHHHHHHhh
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASD-QCKDKDDLNLLQEKLKKQ 289 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~l~~~ 289 (1472)
.++.+|+|.|.+|.||||+|+.++.. ..... ++-++- ..+-...-.....+..... ......+.+.+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45689999999999999999999873 22221 111111 1111111111111111111 111445677788888888
Q ss_pred hCCCe
Q 000471 290 LSGNK 294 (1472)
Q Consensus 290 l~~k~ 294 (1472)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 319
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.12 Score=65.20 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=70.4
Q ss_pred ceeechhHHHHHHHHHhcCCCCCC--CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGD--DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
.++|-++.+..|.+.+.....+.. .....+.+.|+.|+|||-||++++. -+-+..+..+-++.++ ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-h
Confidence 478888888888888876543111 2467888899999999999999986 2323333334444333 222 2
Q ss_pred HHhhcCCCC-CCcccHHHHHHHHHhhhCCCeE-EEEEeCCCCCCHhhHHhhcccc
Q 000471 265 LNSVASDQC-KDKDDLNLLQEKLKKQLSGNKF-LLVLDDVWNENYIRWSELRCPF 317 (1472)
Q Consensus 265 ~~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l 317 (1472)
.+-++.+.. ......+ .+.+.++.++| +|.||||+..+......+...+
T Consensus 634 skligsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hhccCCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 222232211 1222223 45555666655 7889999888766655444444
No 320
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.67 E-value=0.093 Score=56.30 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=71.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC-----CCCHHHHHHHHHHhhcCCCCC------CcccHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE-----DFDVFRISKSILNSVASDQCK------DKDDLNL 281 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~------~~~~~~~ 281 (1472)
..+++|||..|.||||+|+.+.. ....-...+++...+ .....+...++++.++..... +...-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999986 222223334433221 222334556666666643210 1122222
Q ss_pred HHHHHHhhhCCCeEEEEEeCCCCCCH----hhHHhhcccccCCCCCcEEEEEcCChHHHHhhCC
Q 000471 282 LQEKLKKQLSGNKFLLVLDDVWNENY----IRWSELRCPFVAGAAGSKIVVTTRNLVVAERMGA 341 (1472)
Q Consensus 282 ~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~ 341 (1472)
..-.+.+.|.-++-++|.|..-+.-. .+.-.+...+. ...|-..+..|-+-.+++.+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcc
Confidence 23346777888999999998744311 11111111121 1345667777887777776643
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.67 E-value=0.23 Score=56.04 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=36.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSV 268 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1472)
..++.|.|.+|+||||+|.+++.... ..+-..++|++.... ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 45888999999999999999876421 222345788877663 455555555443
No 322
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.67 E-value=0.11 Score=53.25 Aligned_cols=120 Identities=18% Similarity=0.100 Sum_probs=62.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC---CCHHHHHHHH--HHhh--cCC----CCCCccc---
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED---FDVFRISKSI--LNSV--ASD----QCKDKDD--- 278 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i--~~~l--~~~----~~~~~~~--- 278 (1472)
...|.|+|..|-||||.|..+.- +...+=..+..|..-+. ......+..+ +... +.. ......+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 35789999999999999977764 22222223333333222 2333333321 0000 010 0000111
Q ss_pred HHHHHHHHHhhhCCCe-EEEEEeCCCCC---CHhhHHhhcccccCCCCCcEEEEEcCChH
Q 000471 279 LNLLQEKLKKQLSGNK-FLLVLDDVWNE---NYIRWSELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 279 ~~~~~~~l~~~l~~k~-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
.....+..++.+.+.+ =|+|||.+-.. .....+++...+.....+.-||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333455554444 49999998432 22345566666655556779999999863
No 323
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.62 E-value=0.31 Score=48.83 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhCCCeEEEEEeCCCC-CC-HhhHHhhcccccCCCCCcEEEEEcCChHHHHhhC
Q 000471 280 NLLQEKLKKQLSGNKFLLVLDDVWN-EN-YIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMG 340 (1472)
Q Consensus 280 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~-~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~ 340 (1472)
++..-.|.+.+-+++-+++=|.--- .+ ...|+-+.-.-.-+..|..||++|-+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3334456666678888888886411 11 1334433322222457999999999999887764
No 324
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.61 E-value=0.064 Score=53.64 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 325
>PRK14974 cell division protein FtsY; Provisional
Probab=94.60 E-value=0.19 Score=57.27 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=47.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC--HHHHHHHHHHhhcCCCCC--CcccH-HHHHHHH
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD--VFRISKSILNSVASDQCK--DKDDL-NLLQEKL 286 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~--~~~~~-~~~~~~l 286 (1472)
+..++.++|++|+||||++..++.... ...+ .++.+. ...+. ..+-++.....++.+... ...+. ....+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888875322 1223 233343 22222 223344555555543211 11222 2223333
Q ss_pred HhhhCCCeEEEEEeCCCCC
Q 000471 287 KKQLSGNKFLLVLDDVWNE 305 (1472)
Q Consensus 287 ~~~l~~k~~LlVlDdv~~~ 305 (1472)
...-....=+|++|-+...
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222238999998654
No 326
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.58 E-value=0.67 Score=52.16 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.3
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 188 VYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
++=..+....+..++... +-|.|.|++|+||||+|++++.
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH
Confidence 333334456677777432 3588999999999999999987
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.57 E-value=0.15 Score=56.80 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=48.4
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCH--HHHHHHHHHhhcCCC---CCCcccHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV--FRISKSILNSVASDQ---CKDKDDLNLLQEK 285 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~~~~~ 285 (1472)
.+.+++.++|++|+||||++..++... ...-..++++++. .+.. .+-++...+..+.+. ....+......+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346899999999999999998887632 2222345555543 2322 222333344433221 1011112223344
Q ss_pred HHhhhCCCeEEEEEeCCCCC
Q 000471 286 LKKQLSGNKFLLVLDDVWNE 305 (1472)
Q Consensus 286 l~~~l~~k~~LlVlDdv~~~ 305 (1472)
+........=++++|-.-..
T Consensus 147 l~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHHCCCCEEEEeCCCCC
Confidence 44444344557888887443
No 328
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.092 Score=60.74 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
...++.++|++|+||||+|..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 329
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.50 E-value=0.15 Score=52.73 Aligned_cols=128 Identities=23% Similarity=0.222 Sum_probs=61.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC--CCCHHHHHHHHHHhhcCCCCC-C-------cccHHHHH
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE--DFDVFRISKSILNSVASDQCK-D-------KDDLNLLQ 283 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~-~-------~~~~~~~~ 283 (1472)
.+++|+|+.|.|||||++.++.-.. .....+++.-.. ........+.+ ..+...... . ...-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence 5899999999999999999986321 223333332111 01111111111 000000000 0 01111222
Q ss_pred HHHHhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccC-CCCCcEEEEEcCChHHHHhhCCCCceeC
Q 000471 284 EKLKKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVA-GAAGSKIVVTTRNLVVAERMGADPVYQL 347 (1472)
Q Consensus 284 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~iivTtR~~~v~~~~~~~~~~~l 347 (1472)
-.+.+.+-.++-++++|+.... +......+...+.. ...|..||++|.+.+... . .+.++.+
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 3345555667778899987543 22222222222221 123667888888877664 2 3444443
No 330
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.47 E-value=0.042 Score=61.36 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=44.4
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+.+|+|.++.++++++.+.....+.+..-+|+.++|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999876654566779999999999999999998875
No 331
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.42 E-value=0.1 Score=59.96 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=33.2
Q ss_pred eeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 188 VYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777655321 2234789999999999999999863
No 332
>PRK07667 uridine kinase; Provisional
Probab=94.38 E-value=0.052 Score=57.25 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 195 KEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665432 3458999999999999999999986
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.35 E-value=0.2 Score=58.32 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=51.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchh--ccCcceEEEEecCCCC--HHHHHHHHHHhhcCCCCCCcccHHHHHHHHH
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQ--RHYEIKAWTCVSEDFD--VFRISKSILNSVASDQCKDKDDLNLLQEKLK 287 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 287 (1472)
..++|.++|+.|+||||.+..++...... .+-..+..+++. .+. ..+-++..++.++.+.. .....+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 35799999999999999998887632221 111234444443 332 22334555555554322 2234455555554
Q ss_pred hhhCCCeEEEEEeCCCCC
Q 000471 288 KQLSGNKFLLVLDDVWNE 305 (1472)
Q Consensus 288 ~~l~~k~~LlVlDdv~~~ 305 (1472)
+. .+.-+|++|.+...
T Consensus 251 ~~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 251 QS--KDFDLVLVDTIGKS 266 (388)
T ss_pred Hh--CCCCEEEEcCCCCC
Confidence 43 34568999998554
No 334
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.35 E-value=0.051 Score=57.55 Aligned_cols=110 Identities=14% Similarity=0.198 Sum_probs=56.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHH-HHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF-RISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
.+|.|+|+.|.||||+++.+... ........++. +.+..... .-...+..+-. ...+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~-----vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQRE-----VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeecc-----cCCCccCHHHHHHHHhcC
Confidence 47899999999999999987763 22222333332 22211100 00001111100 011122345566777776
Q ss_pred CeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHH
Q 000471 293 NKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVA 336 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~ 336 (1472)
..=.+++|++.+.+ .+...... ...|..++.|+-...+.
T Consensus 74 ~pd~ii~gEird~e--~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLE--TIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHH--HHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 77799999997642 23222222 22455677776655443
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.35 E-value=0.23 Score=51.11 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=54.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEe------cCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHH
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCV------SEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLK 287 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 287 (1472)
.+++|+|+.|.|||||++.+..-.. .....+++.. .+... ...-+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 5899999999999999999986322 1222332211 11100 111122233345
Q ss_pred hhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCC--CCCcEEEEEcCChHHHHh
Q 000471 288 KQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAG--AAGSKIVVTTRNLVVAER 338 (1472)
Q Consensus 288 ~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~~s~iivTtR~~~v~~~ 338 (1472)
+.+..++-++++|+--.. +......+...+... ..+..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 556667788999987443 112222222222211 122567777777665544
No 336
>PTZ00301 uridine kinase; Provisional
Probab=94.35 E-value=0.075 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
..+|+|.|.+|.||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.31 E-value=0.14 Score=53.03 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
++.++|++|+||||+++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998886
No 338
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.29 E-value=0.15 Score=65.72 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=72.3
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILN 266 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1472)
.++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++.... .-...+.+++..-. ...+-..+..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhcC
Confidence 59999999988877665432 12245789999999999999999874211 11234455555432 1111112211
Q ss_pred hhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCC-----------CCCcEEEEEcCCh
Q 000471 267 SVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVVTTRNL 333 (1472)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iivTtR~~ 333 (1472)
...+... . ........+. ....=.|+||||..........+...+... ..+.|||.||...
T Consensus 450 ~~~~~~~--g-~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFT--G-ASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccccc--c-cccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1110000 0 0001111121 123356999999887655555555444221 1346888888653
No 339
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.25 E-value=0.11 Score=59.68 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=36.9
Q ss_pred CceeechhHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 186 AKVYGREKEKEEIIELLLND--------DLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
..++|.++.++.+.-.+... +.......+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889988888887666542 0001123467889999999999999999873
No 340
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.21 E-value=0.11 Score=55.06 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=50.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC-CCHHHHHHHHHHhhcCC-------CCCCcccH------
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-FDVFRISKSILNSVASD-------QCKDKDDL------ 279 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 279 (1472)
.-++|.|.+|+|||+|+.++.++. .-+..+++.+++. ..+.++.+++...-..+ ...+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 468899999999999999998743 2233477777766 34556666654431110 11011111
Q ss_pred --HHHHHHHHhhhCCCeEEEEEeCC
Q 000471 280 --NLLQEKLKKQLSGNKFLLVLDDV 302 (1472)
Q Consensus 280 --~~~~~~l~~~l~~k~~LlVlDdv 302 (1472)
-...+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 122333343 699999999998
No 341
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.20 E-value=0.32 Score=61.52 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred ceeechhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDL------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRI 260 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 260 (1472)
++.|.+..++++.+.+..... .+..-.+-|.++|++|.|||++|+.+++.. ...| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 567877666655554422110 011113348899999999999999998732 2222 1222111 1
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC----------HhhHHh----hcccccC--CCCCc
Q 000471 261 SKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN----------YIRWSE----LRCPFVA--GAAGS 324 (1472)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~~s 324 (1472)
. ..... .....+...+...-...+.+|++|+++... ...+.. +...+.. ...+.
T Consensus 222 ~----~~~~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 222 V----EMFVG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred H----Hhhhc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1 11111 111223333333334567899999985531 011111 1111111 12344
Q ss_pred EEEEEcCChHHHHhh-----CCCCceeCCCCChHhHHHHHHhhh
Q 000471 325 KIVVTTRNLVVAERM-----GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 325 ~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
-||.||..++..... .-+..+.+...+.++-.++++.+.
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 566678776543221 123556777778777778887765
No 342
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.20 E-value=0.036 Score=56.73 Aligned_cols=40 Identities=28% Similarity=0.148 Sum_probs=28.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchh-ccCcceEEEEecCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQ-RHYEIKAWTCVSED 254 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 254 (1472)
..++.+.|+.|+|||.+|+++..- .. +.....+-++++.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcc
Confidence 467889999999999999999862 22 23334555555543
No 343
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.15 E-value=0.062 Score=53.31 Aligned_cols=36 Identities=28% Similarity=0.157 Sum_probs=26.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEE
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTC 250 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 250 (1472)
..||.|.|.+|.||||||+++... ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 368999999999999999999873 333333445543
No 344
>PRK13948 shikimate kinase; Provisional
Probab=94.13 E-value=0.4 Score=49.57 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
..+.|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999986
No 345
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.11 E-value=0.14 Score=62.16 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=43.2
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEE
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTC 250 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 250 (1472)
+++--.+-++++..||...-. +....+++.+.|++|+||||.++.+++.. .|+..-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 455556778999999976432 33346799999999999999999998742 356666754
No 346
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.32 Score=50.32 Aligned_cols=120 Identities=17% Similarity=0.089 Sum_probs=60.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcC--CCC--CC---------cccH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVAS--DQC--KD---------KDDL 279 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~--~~---------~~~~ 279 (1472)
-.+++|+|+.|.|||||++.++.... .....+++.-....+.. ..+...+.. +.. .. ...-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999986421 22333443211100000 011111110 000 00 0111
Q ss_pred HHHHHHHHhhhCCCeEEEEEeCCCCC-CHhhHHhhcccccCC-CCCcEEEEEcCChHHHHh
Q 000471 280 NLLQEKLKKQLSGNKFLLVLDDVWNE-NYIRWSELRCPFVAG-AAGSKIVVTTRNLVVAER 338 (1472)
Q Consensus 280 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~~s~iivTtR~~~v~~~ 338 (1472)
+...-.+.+.+..++-++++|+.-.. +......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 12223455666678889999997443 222223333333221 236678888888776554
No 347
>PRK06547 hypothetical protein; Provisional
Probab=94.10 E-value=0.064 Score=54.99 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
....+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999863
No 348
>PTZ00494 tuzin-like protein; Provisional
Probab=94.07 E-value=2 Score=49.16 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=102.7
Q ss_pred CCcCCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHH
Q 000471 182 LVNEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRIS 261 (1472)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1472)
.....++|.|++|-..+.+.|.+-+. ..++++.+.|.-|.||++|.+.....+.. ..++|++....| -+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hH
Confidence 34566799999999999998877643 56899999999999999999888764332 467788877655 46
Q ss_pred HHHHHhhcCCCCCC-cccHHHHHHHHH---hhhCCCeEEEEEeCCCCCCHh-hHHhhcccccCCCCCcEEEEEcCChHHH
Q 000471 262 KSILNSVASDQCKD-KDDLNLLQEKLK---KQLSGNKFLLVLDDVWNENYI-RWSELRCPFVAGAAGSKIVVTTRNLVVA 336 (1472)
Q Consensus 262 ~~i~~~l~~~~~~~-~~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~~~-~~~~l~~~l~~~~~~s~iivTtR~~~v~ 336 (1472)
+.+.+.++.+..+. .+-++-+.+..+ ....++.=+||+-==.-.+.. -+.+.. .+.....-|.|++---.+.+.
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhc
Confidence 77788887764322 122333333332 234456556665322111111 111111 223334456777654433322
Q ss_pred Hhh---CCCCceeCCCCChHhHHHHHHhhh
Q 000471 337 ERM---GADPVYQLKELSDDDCLCVLTQIS 363 (1472)
Q Consensus 337 ~~~---~~~~~~~l~~L~~~~~~~lf~~~a 363 (1472)
... ..-..|.+.+++.++|.+.-.+..
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111 112468899999999988876653
No 349
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.05 E-value=0.24 Score=54.49 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+..|+|+||+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999998875
No 350
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.98 E-value=0.29 Score=56.98 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC----CcccHHHHHHHHH
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK----DKDDLNLLQEKLK 287 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 287 (1472)
.-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++ +.-+..++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 45799999999999999999998632 222345677776543 3332 2223444432211 1123444444443
Q ss_pred hhhCCCeEEEEEeCCCC
Q 000471 288 KQLSGNKFLLVLDDVWN 304 (1472)
Q Consensus 288 ~~l~~k~~LlVlDdv~~ 304 (1472)
+ .+.-+||+|.+..
T Consensus 156 ~---~~~~lVVIDSIq~ 169 (372)
T cd01121 156 E---LKPDLVIIDSIQT 169 (372)
T ss_pred h---cCCcEEEEcchHH
Confidence 2 3566888888743
No 351
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.38 Score=59.47 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=85.2
Q ss_pred ceeechhHHHHHHHHH---hcCCCC----CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 187 KVYGREKEKEEIIELL---LNDDLR----GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L---~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
++.|.+...+.+.+.+ ...... +-...+.+.++|++|.|||.||+++++ ....+|- .+...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~----- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS----- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH-----
Confidence 4556665555544443 221110 123456899999999999999999998 2233332 22111
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCH-----------hhHHhhcccccC--CCCCcEE
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENY-----------IRWSELRCPFVA--GAAGSKI 326 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~~s~i 326 (1472)
+++.... ......+...+....+..+..|.+|.++.... .-...+...+.. ...+..|
T Consensus 311 ---~l~sk~v------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ---ELLSKWV------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ---HHhcccc------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 1111111 12223334444455567889999999854210 111222222221 2234445
Q ss_pred EEEcCChHHHHhh-----CCCCceeCCCCChHhHHHHHHhhhc
Q 000471 327 VVTTRNLVVAERM-----GADPVYQLKELSDDDCLCVLTQISL 364 (1472)
Q Consensus 327 ivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 364 (1472)
|-||-.+...... .-+..+.+..-+.++..+.|..+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5566555433221 2245678888899999999998874
No 352
>PRK05439 pantothenate kinase; Provisional
Probab=93.96 E-value=0.26 Score=55.32 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCCcEEEEEEccCCCcHHHHHHHHhcCcchhcc--CcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHH
Q 000471 210 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--YEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLK 287 (1472)
Q Consensus 210 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 287 (1472)
....-+|+|.|.+|+||||+|+.+..- .... -..+.-++...=+-..+.+.+- ..+......+.-+.+.+...+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 346789999999999999999988752 2221 1223334333322222222110 1111111123456666777666
Q ss_pred hhhCCCe
Q 000471 288 KQLSGNK 294 (1472)
Q Consensus 288 ~~l~~k~ 294 (1472)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6655554
No 353
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.94 E-value=0.012 Score=61.44 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=62.7
Q ss_pred cccCCCCcCcEEecCCcccc-----ccchhhhhcccccEEecCCCc---chhhh-------hhhhcccCCCceeecCCCC
Q 000471 616 NEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLEDCH---QLKKL-------CKDMGNLRKLHHLRNSTAN 680 (1472)
Q Consensus 616 ~~i~~L~~Lr~L~L~~~~i~-----~lP~~i~~L~~L~~L~L~~~~---~l~~l-------p~~i~~L~~L~~L~l~~~~ 680 (1472)
..+..+..+..++||||.|. .+...|.+-.+|+..+++.-. ...++ -..+-++++|+..++|.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 44556788999999999886 355667788899999887521 11233 3346678999999999998
Q ss_pred CcccCCCc----ccccccccccCceEe
Q 000471 681 SLKEMPKG----FGKLTSLLTLGRFVV 703 (1472)
Q Consensus 681 ~~~~~p~~----i~~L~~L~~L~~~~~ 703 (1472)
+....|+. |++-+.|.+|....+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC
Confidence 76676654 566777887754433
No 354
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.27 Score=50.92 Aligned_cols=51 Identities=33% Similarity=0.284 Sum_probs=37.5
Q ss_pred CceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 186 AKVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.++-|.+-.++++.+...-.-. -+-+.++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3567888888888776532110 03355678889999999999999999985
No 355
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.94 E-value=0.028 Score=34.93 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=18.8
Q ss_pred cceEEEecCCCCCccCCcccCCC
Q 000471 599 RLRVFSLRGCGNIFNLPNEIGNL 621 (1472)
Q Consensus 599 ~Lr~L~L~~~~~~~~lp~~i~~L 621 (1472)
+|++|||++| .++.+|.+|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 999999888764
No 356
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.93 E-value=0.31 Score=53.46 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=34.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
...+++.|.|.+|+|||++|.++... .-..-..++||+..+ ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 35689999999999999999987652 112345678888765 34455444
No 357
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.92 E-value=0.04 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998863
No 358
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.92 E-value=0.052 Score=60.32 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHh-hcCCCC
Q 000471 195 KEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNS-VASDQC 273 (1472)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~ 273 (1472)
...+++.+... -+-|.++|+.|+|||++++........ ..| ...-++.+...+...+++ ++++ +.....
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~-~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQK-IIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHH-CCCTTECECTT
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHH-HHhhcEEcCCC
Confidence 35566666553 246789999999999999998753211 111 123344544433333322 2211 111000
Q ss_pred CCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhh
Q 000471 274 KDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIR 309 (1472)
Q Consensus 274 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 309 (1472)
. ...--.+|+.++.+||+.-...+.
T Consensus 92 -~----------~~gP~~~k~lv~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 92 -R----------VYGPPGGKKLVLFIDDLNMPQPDK 116 (272)
T ss_dssp -E----------EEEEESSSEEEEEEETTT-S---T
T ss_pred -C----------CCCCCCCcEEEEEecccCCCCCCC
Confidence 0 000114789999999996654443
No 359
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.90 E-value=0.19 Score=62.10 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=73.9
Q ss_pred CCceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 185 EAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ..-...+.|++..-.+ ..+-.++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHh
Confidence 34699999999998888866421 234578999999999999999987321 1112345566654432 1111122
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCC-----------CCcEEEEEcCCh
Q 000471 265 LNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGA-----------AGSKIVVTTRNL 333 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~iivTtR~~ 333 (1472)
.....+... . . .......+.. ...=-|+||+|..........+...+..+. ...|||.||...
T Consensus 259 fG~~~g~~~-g-a-~~~~~g~~~~---a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFT-G-A-ISNRSGKFEL---ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccC-C-C-cccCCcchhh---cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 111111000 0 0 0000001111 122347899998876665566655443221 245888888653
No 360
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.89 E-value=0.49 Score=50.06 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhCCCeEEEEEeCCCC-CCHhhHHhhcccccC--CCCCcEEEEEcCChHHHHhh
Q 000471 280 NLLQEKLKKQLSGNKFLLVLDDVWN-ENYIRWSELRCPFVA--GAAGSKIVVTTRNLVVAERM 339 (1472)
Q Consensus 280 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~~s~iivTtR~~~v~~~~ 339 (1472)
++..-.+.+.|-..+-+|+-|+=-. -+...-+.+...+.. ...|..||+.|-++.+|..+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 3444556777778888888887422 111222223222222 23577899999999999864
No 361
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.89 E-value=0.071 Score=58.92 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 000471 214 SVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999863
No 362
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.076 Score=51.50 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=32.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCC
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASD 271 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 271 (1472)
+|.|-|++|.||||+|+.++++.... | .+.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68899999999999999998743221 1 13446778888877654
No 363
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.86 E-value=0.039 Score=53.98 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 000471 216 ISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~ 236 (1472)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 364
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.23 Score=51.82 Aligned_cols=55 Identities=29% Similarity=0.283 Sum_probs=37.4
Q ss_pred ceeechhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC
Q 000471 187 KVYGREKEKEEIIELLLNDDL-------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY 243 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 243 (1472)
++=|-.++++++.+...-.-- -+-+.++-|..+|++|.|||-.|++|+| +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 455667777777765432110 0234567788999999999999999998 444444
No 365
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.84 E-value=0.29 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 366
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.83 E-value=0.12 Score=59.44 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=49.2
Q ss_pred CceeechhHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccC---cceEEEEec-C
Q 000471 186 AKVYGREKEKEEIIELLLND--------DLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHY---EIKAWTCVS-E 253 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~-~ 253 (1472)
..++|.++.++.+..++... ........+.+.++|++|+|||++|+.+... ....| +...|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 45899999999988887541 0001112467899999999999999999863 22222 222222221 1
Q ss_pred CCCHHHHHHHHHHhh
Q 000471 254 DFDVFRISKSILNSV 268 (1472)
Q Consensus 254 ~~~~~~~~~~i~~~l 268 (1472)
..+...+.+.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235556666665544
No 367
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.83 E-value=0.23 Score=52.35 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=38.7
Q ss_pred CCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEE---------EEecCCCCHHHHH--HHHHHhhcCCCC
Q 000471 209 GDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAW---------TCVSEDFDVFRIS--KSILNSVASDQC 273 (1472)
Q Consensus 209 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w---------v~~~~~~~~~~~~--~~i~~~l~~~~~ 273 (1472)
...+..+|.++||+|.||||..+.++.+... .+....- |....+.|++... ++..++......
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~--~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHA--KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhh--ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 3345678889999999999999999874322 2221111 2233344555543 566777665544
No 368
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.82 E-value=0.052 Score=58.19 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999999986
No 369
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=1 Score=54.89 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=60.5
Q ss_pred CceeechhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDL------RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFR 259 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1472)
.++=|.++-+.+|.+-+.-.=. .+-.+..=|.++|++|.|||-+|++|+.. .. ..|++|-+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH-----
Confidence 4577888888888876632100 01122456789999999999999999973 21 234555443
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCC
Q 000471 260 ISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNE 305 (1472)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 305 (1472)
+++.---+ .+.+.+.+.+.+.=..++++|.||.+++.
T Consensus 740 ---ELLNMYVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ---ELLNMYVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ---HHHHHHhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22221111 12233444444444578999999999764
No 370
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.81 E-value=0.18 Score=54.23 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 371
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.81 E-value=0.045 Score=57.97 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
||+|.|++|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 372
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.79 E-value=0.051 Score=58.44 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.+..+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999863
No 373
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.79 E-value=0.95 Score=49.28 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=68.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSG 292 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1472)
.+.+.|+|+.|+|||+-++.+++. .+..+-+..+..+....+...+......... .........+...+++
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~---~~~~d~~~~~~~~l~~ 164 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATD---GTINDLTERLMIRLRD 164 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHcc
Confidence 348889999999999999999873 2334446677777777777766665554432 3444555566666788
Q ss_pred CeEEEEEeCCCCCCHhhHHhhccccc
Q 000471 293 NKFLLVLDDVWNENYIRWSELRCPFV 318 (1472)
Q Consensus 293 k~~LlVlDdv~~~~~~~~~~l~~~l~ 318 (1472)
..-+|+.|+.+......++.++....
T Consensus 165 ~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 165 TVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred CcceeeeehhhccChHHHHHHHHHHH
Confidence 89999999998876666776665443
No 374
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.79 E-value=0.24 Score=53.94 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+...+++|.|+.|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.75 E-value=0.032 Score=52.48 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=18.0
Q ss_pred EEEEccCCCcHHHHHHHHhcCcchhccCc
Q 000471 216 ISINGMGGVGKTTLAQLVYNDDRVQRHYE 244 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 244 (1472)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999997 3445553
No 376
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=0.27 Score=55.95 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=52.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC-CCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-FDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
+.+++.|+|+.|+||||++..++... ...-..+.+|++... ....+-++...+.++.+.. ...+..++.+.+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHH
Confidence 46899999999999999999887632 222234556665432 1223445555555554322 2234445555554332
Q ss_pred C-CCeEEEEEeCCCC
Q 000471 291 S-GNKFLLVLDDVWN 304 (1472)
Q Consensus 291 ~-~k~~LlVlDdv~~ 304 (1472)
. +..=+|++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3446788888755
No 377
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.71 E-value=0.23 Score=53.18 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhc-cCCChHHHHHHHHHHhHhhcchhhhhHH
Q 000471 33 KLEADFIKWKRMLKMIKAVLADAEDR-QTKDESVKTWLDDLQNLAYDAEDVLDEL 86 (1472)
Q Consensus 33 ~~~~~~~~l~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~ayd~ed~lD~~ 86 (1472)
-++.+++-++.+++.+|.||+..... +..-.....+..++-..||++|+++|.+
T Consensus 318 flKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 318 FLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 36899999999999999999987443 4333348899999999999999999975
No 378
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.71 E-value=0.078 Score=57.08 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 000471 216 ISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~ 236 (1472)
|.|.|++|+||||+|+.++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999763
No 379
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.64 E-value=0.4 Score=56.27 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
....+|.++|++|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988875
No 380
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.54 E-value=0.18 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
..+|+|+|++|+||||+|++++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 381
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.51 E-value=0.2 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-.+++|+|+.|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 382
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.50 E-value=0.3 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 383
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.45 E-value=0.19 Score=59.08 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=49.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCC------CCCCcccHH----HH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASD------QCKDKDDLN----LL 282 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~----~~ 282 (1472)
-..++|+|..|+|||||++.+..... ....++|....+..++.++....+...... ...+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999886322 222344544334445555554444433111 010111111 11
Q ss_pred HHHHHhhh--CCCeEEEEEeCCCC
Q 000471 283 QEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 283 ~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
.-.+.+++ +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 12233333 48899999999833
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.39 E-value=0.18 Score=63.32 Aligned_cols=86 Identities=22% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC----CcccHHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK----DKDDLNLLQEKL 286 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l 286 (1472)
...+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++.+... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45689999999999999999887652 22333567999988887743 55666554211 223334445555
Q ss_pred HhhhC-CCeEEEEEeCCC
Q 000471 287 KKQLS-GNKFLLVLDDVW 303 (1472)
Q Consensus 287 ~~~l~-~k~~LlVlDdv~ 303 (1472)
.+.++ ++--|||+|-+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456689999984
No 385
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.34 E-value=0.52 Score=47.26 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 386
>PHA00729 NTP-binding motif containing protein
Probab=93.33 E-value=0.095 Score=55.37 Aligned_cols=24 Identities=46% Similarity=0.468 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999873
No 387
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.66 Score=48.31 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=35.2
Q ss_pred HHhhhCCCeEEEEEeCCCCCC-HhhHHhhcccccC-CCCCcEEEEEcCChHHHHhhCCCCce
Q 000471 286 LKKQLSGNKFLLVLDDVWNEN-YIRWSELRCPFVA-GAAGSKIVVTTRNLVVAERMGADPVY 345 (1472)
Q Consensus 286 l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~-~~~~s~iivTtR~~~v~~~~~~~~~~ 345 (1472)
+.+.+-=++-+.|||..++-- .+..+.+...+.. ...|+-+||.|-.+.++.....+.+|
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344444567799999987742 1222222221111 13467788888888899887666543
No 388
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.30 E-value=0.11 Score=54.88 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000471 214 SVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998874
No 389
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.23 E-value=0.22 Score=61.45 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=40.6
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED 254 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1472)
.++|....+.++++.+..-.. .-.-|.|+|..|+||+++|++++... . ..-...+.++++.-
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s-~-r~~~pfv~inca~~ 266 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS-P-RGKKPFLALNCASI 266 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC-C-CCCCCeEEeccccC
Confidence 589999888888777653221 12347799999999999999987531 1 11123345665554
No 390
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.6 Score=56.65 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=91.8
Q ss_pred CcCCceeechhHHHH---HHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC
Q 000471 183 VNEAKVYGREKEKEE---IIELLLNDDL---RGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD 256 (1472)
Q Consensus 183 ~~~~~~vGr~~~~~~---l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1472)
+.-.++.|.|+.+++ +++.|.++.. -+..-++-|..+|++|.|||.||++++....+- | .+.|..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch--
Confidence 344568898876655 5555544321 022335678899999999999999999865442 2 112221
Q ss_pred HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC----------HhhHHhhccc----ccCCC-
Q 000471 257 VFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN----------YIRWSELRCP----FVAGA- 321 (1472)
Q Consensus 257 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l~~~----l~~~~- 321 (1472)
+..+.+- ........+...+..+.-++.|++|.++... .+++++.... ....+
T Consensus 218 ------~FVemfV------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 218 ------DFVEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred ------hhhhhhc------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 1111111 1112233445555556668899999875431 1223332222 22222
Q ss_pred -CCcEEEEEcCChHHHHhh--C---CCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChh
Q 000471 322 -AGSKIVVTTRNLVVAERM--G---ADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPL 391 (1472)
Q Consensus 322 -~~s~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 391 (1472)
.|-.||-.|-.++|.... . -+..+.++.-+-..-.++++-++-... ....-++.. |++.+-|.--
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~-l~~~Vdl~~----iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP-LAEDVDLKK----IARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC-CCCcCCHHH----HhhhCCCccc
Confidence 343444455555555322 1 223344444444555556665542221 112222222 6666766543
No 391
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.18 E-value=0.14 Score=54.57 Aligned_cols=60 Identities=25% Similarity=0.244 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCH
Q 000471 194 EKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV 257 (1472)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1472)
+..++++.+... .++..+|+|.|+||+|||||..++....+.+++=-.++=|+=|..++-
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 455666666543 235689999999999999999888764333222223333444445543
No 392
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.14 E-value=0.29 Score=53.40 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=54.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcch--hccCcceEEEEecCCC-CHHHHHHHHHHhhcCC-------CCCCcccHH---
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRV--QRHYEIKAWTCVSEDF-DVFRISKSILNSVASD-------QCKDKDDLN--- 280 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 280 (1472)
.-++|.|..|+|||+|+..+.++... +.+-+.++++-+++.. .+.++..++.+.=... ...+..-..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999998875321 1234667888887764 4555665554431111 000111111
Q ss_pred -HHHHHHHhhh---CCCeEEEEEeCCCC
Q 000471 281 -LLQEKLKKQL---SGNKFLLVLDDVWN 304 (1472)
Q Consensus 281 -~~~~~l~~~l---~~k~~LlVlDdv~~ 304 (1472)
.....+.+++ +++++|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1122344444 26899999999844
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.10 E-value=0.05 Score=50.92 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.6
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 000471 216 ISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~ 236 (1472)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998863
No 394
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.10 E-value=0.068 Score=54.78 Aligned_cols=25 Identities=48% Similarity=0.525 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDD 237 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~ 237 (1472)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999743
No 395
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.09 E-value=0.5 Score=59.34 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=49.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC--HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD--VFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
.+|++++|+.|+||||++..++...........+..++.. .+. ..+-++...+.++.+.. ...+..++.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 5799999999999999998888643211111234444433 232 33445555555554332 22344555555543 3
Q ss_pred CCCeEEEEEeCCC
Q 000471 291 SGNKFLLVLDDVW 303 (1472)
Q Consensus 291 ~~k~~LlVlDdv~ 303 (1472)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 444 377777775
No 396
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.08 E-value=0.13 Score=49.56 Aligned_cols=40 Identities=28% Similarity=0.240 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 193 KEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
++.+++.+.|...- ....+|.+.|.-|.||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555554321 12358999999999999999999874
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.05 E-value=0.26 Score=54.66 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 253 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 253 (1472)
...+++.|.|.+|+|||++|.+++... ...=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 346799999999999999999986531 12234678888764
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.01 E-value=0.46 Score=52.56 Aligned_cols=130 Identities=17% Similarity=0.080 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCC-
Q 000471 194 EKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQ- 272 (1472)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~- 272 (1472)
..+.++..+... .+..-++|+|+.|.|||||.+.+..... .....+++.-..- ...+-..++......-.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV-GIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe-ecchhHHHHHHHhccccc
Confidence 344555555432 2346789999999999999999987322 2223333321111 00011123322221110
Q ss_pred CC-----C-cccHHHHHHHHHhhh-CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChHHHHh
Q 000471 273 CK-----D-KDDLNLLQEKLKKQL-SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER 338 (1472)
Q Consensus 273 ~~-----~-~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~ 338 (1472)
.. + .+.... ...+...+ ...+=++|+|.+... ..+..+...+. .|..||+||-+..+...
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00 0 001111 11122222 246789999998553 44455544432 47789999987666443
No 399
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.93 E-value=0.25 Score=48.07 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=27.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEe
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 251 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 251 (1472)
-+.|+|-||+||+++.+.+|.- -..+.|...+||+.
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 4569999999999999999963 23345666777754
No 400
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.93 E-value=0.69 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999863
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.91 E-value=0.42 Score=56.12 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988875
No 402
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.90 E-value=0.18 Score=52.32 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 403
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.90 E-value=0.43 Score=50.77 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHhhhCCCeEEEEEeCCCCC-CHhhHH-hhcccccCCC-C-CcEEEEEcCChHHHHhhCCCCceeC
Q 000471 285 KLKKQLSGNKFLLVLDDVWNE-NYIRWS-ELRCPFVAGA-A-GSKIVVTTRNLVVAERMGADPVYQL 347 (1472)
Q Consensus 285 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-~s~iivTtR~~~v~~~~~~~~~~~l 347 (1472)
.+.+.+..+.-++++|+.... +..... .+...+.... . |..||++|.+.+.... .+.++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 345566678889999998543 222223 3333333222 2 5578888888776643 3445444
No 404
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.44 Score=54.75 Aligned_cols=70 Identities=9% Similarity=-0.020 Sum_probs=39.7
Q ss_pred cEEE-EEcCChHHHHh--hC---CCCceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHH
Q 000471 324 SKIV-VTTRNLVVAER--MG---ADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLG 397 (1472)
Q Consensus 324 s~ii-vTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 397 (1472)
-||| .||...+-... +. .+-.+.+.--+.+....|+.++..... + ..++.+|.+...|.-+.=..++
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHH
Confidence 3555 57776543221 12 223467788888888888888863322 1 2456666666666655544555
Q ss_pred hhh
Q 000471 398 GLL 400 (1472)
Q Consensus 398 ~~L 400 (1472)
..|
T Consensus 411 e~l 413 (457)
T KOG0743|consen 411 EEL 413 (457)
T ss_pred HHH
Confidence 444
No 405
>PRK04040 adenylate kinase; Provisional
Probab=92.88 E-value=0.078 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 406
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.87 E-value=0.064 Score=30.82 Aligned_cols=16 Identities=50% Similarity=0.831 Sum_probs=6.3
Q ss_pred cCcEEecCCccccccc
Q 000471 623 HLRCLNLSRTRIQILP 638 (1472)
Q Consensus 623 ~Lr~L~L~~~~i~~lP 638 (1472)
+||.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 407
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.87 E-value=0.33 Score=56.75 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=51.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC-HHHHHHHHHHhhcCCC------CCCcccHH-----
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD-VFRISKSILNSVASDQ------CKDKDDLN----- 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~----- 280 (1472)
-..++|+|..|+|||||++.+.... ..+.++.+-+++... +.++..+++..-.... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3579999999999999999998632 224566666666543 4445555443311110 00111111
Q ss_pred HHHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 281 LLQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 281 ~~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
.....+.+++ +++++|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1112233444 58999999999933
No 408
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.84 E-value=0.0072 Score=61.54 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=67.8
Q ss_pred hccCCcceEEEecCCCCCccCCcccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCce
Q 000471 594 LNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHH 673 (1472)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 673 (1472)
+..++..++||++.| .+..+-..|+.+..|..||++.|.|..+|+.++.+..+..+++.. +.....|.+++.+++++.
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence 345677888888888 777777777788888888888888888888888888888888766 567788888888888888
Q ss_pred eecCCCC
Q 000471 674 LRNSTAN 680 (1472)
Q Consensus 674 L~l~~~~ 680 (1472)
++.-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8877765
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.82 E-value=0.12 Score=55.21 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000471 214 SVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 410
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.81 E-value=0.36 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.+..+|.|.|.+|.|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 411
>PRK03839 putative kinase; Provisional
Probab=92.79 E-value=0.076 Score=55.52 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.77 E-value=0.18 Score=53.36 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=60.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC--Cc----ccHHHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK--DK----DDLNLLQEKL 286 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~----~~~~~~~~~l 286 (1472)
.+++.|.|+.|.||||+.+.+.... +-.+. ..+|.+.. .. -.+...|...+...... .. .+..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999886421 11111 11221111 01 12223333333322110 00 1111221111
Q ss_pred HhhhCCCeEEEEEeCCCCCC-Hhh----HHhhcccccCCCCCcEEEEEcCChHHHHhhCC
Q 000471 287 KKQLSGNKFLLVLDDVWNEN-YIR----WSELRCPFVAGAAGSKIVVTTRNLVVAERMGA 341 (1472)
Q Consensus 287 ~~~l~~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~ 341 (1472)
+ +..++-|+++|...... ..+ ...+...+.. .|..+|++|-+.+++..+..
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 1 23567899999984421 122 1122222322 37899999999998877653
No 413
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.77 E-value=0.17 Score=52.37 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 414
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.77 E-value=0.088 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 415
>PRK04328 hypothetical protein; Provisional
Probab=92.75 E-value=0.34 Score=53.40 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=31.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED 254 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1472)
.-.++.|.|.+|.|||+||.++... ....-...+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 4579999999999999999987653 2223456788887664
No 416
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.67 E-value=0.0097 Score=60.64 Aligned_cols=87 Identities=25% Similarity=0.284 Sum_probs=77.6
Q ss_pred CccCC-cccCCCCcCcEEecCCccccccchhhhhcccccEEecCCCcchhhhhhhhcccCCCceeecCCCCCcccCCCcc
Q 000471 611 IFNLP-NEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLRNSTANSLKEMPKGF 689 (1472)
Q Consensus 611 ~~~lp-~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 689 (1472)
+..+| ..|.....-+.||++.|++..+-..|+.|+.|..||++. +.+..+|..++.+..++++++..|+ ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44566 567778899999999999999999999999999999998 6789999999999999999998887 88999999
Q ss_pred cccccccccC
Q 000471 690 GKLTSLLTLG 699 (1472)
Q Consensus 690 ~~L~~L~~L~ 699 (1472)
+++..++.+.
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999888773
No 417
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.66 E-value=0.81 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
-.+++|+|+.|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999975
No 418
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.66 E-value=0.4 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-.+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 419
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.64 E-value=0.2 Score=59.04 Aligned_cols=50 Identities=30% Similarity=0.262 Sum_probs=34.8
Q ss_pred CceeechhHHHHHHHHHhcC----CC------CCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 186 AKVYGREKEKEEIIELLLND----DL------RGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
..+||.+..++.+...+... .. ...-..+.+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999988886554210 00 0011235688999999999999999986
No 420
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=92.62 E-value=2 Score=42.39 Aligned_cols=82 Identities=11% Similarity=0.202 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhccC-CChHHHHHHHHHHhHhhcchhhh
Q 000471 5 GEAVLSASVELLIEKLASKGLELFTRHKKLEADFIKWKRMLKMIKAVLADAEDRQT-KDESVKTWLDDLQNLAYDAEDVL 83 (1472)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~ayd~ed~l 83 (1472)
|+.+++|+++.+++.+..............+.-.++|...++.|.-++++.+.-.. -+..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444555556778888999999999999998876432 13333677788888888899999
Q ss_pred hHH
Q 000471 84 DEL 86 (1472)
Q Consensus 84 D~~ 86 (1472)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 876
No 421
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.57 E-value=0.81 Score=47.19 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=67.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEec-------------------CCCC-----------------
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVS-------------------EDFD----------------- 256 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~~----------------- 256 (1472)
-.|++|+|+.|.|||||.+.+-.= ...-...+||.-. +.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 358999999999999999988642 2222344444321 1111
Q ss_pred --------HHHHHHHHHHhhcCCCCC-----CcccHHHHHHHHHhhhCCCeEEEEEeCCCCCC-HhhHHhhcccccC-CC
Q 000471 257 --------VFRISKSILNSVASDQCK-----DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNEN-YIRWSELRCPFVA-GA 321 (1472)
Q Consensus 257 --------~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~-~~ 321 (1472)
.++...++++.++..... ....-++..-.|.+.|.=++-++.||..-+.- +....++..-+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 223333444444332110 11222334445677777778899999986542 2222222222211 23
Q ss_pred CCcEEEEEcCChHHHHhhC
Q 000471 322 AGSKIVVTTRNLVVAERMG 340 (1472)
Q Consensus 322 ~~s~iivTtR~~~v~~~~~ 340 (1472)
.|-..|+.|-....|+.+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 5666777777777776653
No 422
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.4 Score=48.73 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=60.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
.+++|+|..|.|||||++.+..... .....+++......... .......+..-. +...-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~--qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLP--LEELRRRIGYVP--QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCC--HHHHHhceEEEe--eCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999987422 23444444322111100 011111111100 0111122233355555566
Q ss_pred eEEEEEeCCCCC-CHhhHHhhcccccCC-CCCcEEEEEcCChHHHHhh
Q 000471 294 KFLLVLDDVWNE-NYIRWSELRCPFVAG-AAGSKIVVTTRNLVVAERM 339 (1472)
Q Consensus 294 ~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~~s~iivTtR~~~v~~~~ 339 (1472)
+-++++|+.... +......+...+... ..+..+|++|.+.......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 789999998543 122222332222211 1246788888887766553
No 423
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.55 E-value=1.2 Score=49.53 Aligned_cols=142 Identities=9% Similarity=-0.015 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhc-cCcceEEEEecCCCCHHHHHHHHHHhhcCCC
Q 000471 194 EKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-HYEIKAWTCVSEDFDVFRISKSILNSVASDQ 272 (1472)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 272 (1472)
.-+++...+..+. -.....++|+.|+||+++|..++...-... ...|..| .....+|... +....
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~-~~~~HPD~~~--------i~p~~ 70 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKI-SQKIHPDIHE--------FSPQG 70 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHH-hcCCCCCEEE--------EecCC
Confidence 3456666665432 245677999999999999988875221100 0000000 0000000000 00000
Q ss_pred CCCcccHHHHHHHHHhhh-----CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHh-hCCCCce
Q 000471 273 CKDKDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER-MGADPVY 345 (1472)
Q Consensus 273 ~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~-~~~~~~~ 345 (1472)
......+++..+ +.+.+ .+++-++|+|+++......+..+...+.....++.+|++|.+.+ +... ......+
T Consensus 71 ~~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~ 149 (290)
T PRK05917 71 KGRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSI 149 (290)
T ss_pred CCCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEE
Confidence 000112333222 22222 35566899999988877778888777766666777776666643 3322 2223455
Q ss_pred eCCCC
Q 000471 346 QLKEL 350 (1472)
Q Consensus 346 ~l~~L 350 (1472)
.+.++
T Consensus 150 ~~~~~ 154 (290)
T PRK05917 150 HIPME 154 (290)
T ss_pred Eccch
Confidence 66554
No 424
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.52 E-value=0.73 Score=52.44 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=33.0
Q ss_pred ceeCCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHH
Q 000471 344 VYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAA 393 (1472)
Q Consensus 344 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 393 (1472)
++++++++.+|+..++.-++-..-- .....-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6799999999999998877632211 111223556677777779999543
No 425
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.47 E-value=3.9 Score=45.62 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=46.7
Q ss_pred CCCeEEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH-HHHhh-CCCCceeCCCCChHhHHHHHHh
Q 000471 291 SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-GADPVYQLKELSDDDCLCVLTQ 361 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 361 (1472)
.+++-++|+||++......+..+...+.....++.+|++|.+.+ +.... .....+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 35677999999998887778888877776666777777776643 33332 2234566766 66666666643
No 426
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.64 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
-.+++|+|+.|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 427
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.46 E-value=0.65 Score=50.26 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHhhhCCCeEEEEEeCCCCC----CHhhHHhhcccccCCCCCcEEEEEcCChHHHHhhCC
Q 000471 283 QEKLKKQLSGNKFLLVLDDVWNE----NYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMGA 341 (1472)
Q Consensus 283 ~~~l~~~l~~k~~LlVlDdv~~~----~~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~ 341 (1472)
...+.+.|..+.=+++||.=-+. .+.+.-++...+. ...|..||+++-+.+.|..++.
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhCC
Confidence 34556677777778889975321 2222222222232 1346779999999888776543
No 428
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.45 E-value=0.26 Score=57.15 Aligned_cols=64 Identities=23% Similarity=0.183 Sum_probs=46.8
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
.++|+++.+..+...+..+ +-+.+.|++|+|||+||++++.. .. ....+|.+.......++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCc
Confidence 3889988888888777664 34789999999999999999862 22 23456677766666555443
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.44 E-value=0.66 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
..+|++++|+.|+||||++..++..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3479999999999999999999863
No 430
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.44 E-value=0.27 Score=58.22 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=54.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC-CHHHHHHHHHHhhcCCC------CCCcccH-----H
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF-DVFRISKSILNSVASDQ------CKDKDDL-----N 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~-----~ 280 (1472)
-.-++|.|.+|+|||||+.++.+.... .+-+.++++-+++.. .+.++..++...-.... ..+.... .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 356899999999999999988874332 255677777776654 44555555544221110 0011111 1
Q ss_pred HHHHHHHhhh---CCCeEEEEEeCCCC
Q 000471 281 LLQEKLKKQL---SGNKFLLVLDDVWN 304 (1472)
Q Consensus 281 ~~~~~l~~~l---~~k~~LlVlDdv~~ 304 (1472)
.....+.+++ +++++|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1223344555 37899999999933
No 431
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.33 E-value=0.94 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 432
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.25 E-value=0.55 Score=55.39 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=51.5
Q ss_pred cEEEEEEccCCCcHHHHH-HHHhcCcchh-----ccCcceEEEEecCCCCHHHHHHHHHHhhcC-C-------CCCCccc
Q 000471 213 FSVISINGMGGVGKTTLA-QLVYNDDRVQ-----RHYEIKAWTCVSEDFDVFRISKSILNSVAS-D-------QCKDKDD 278 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~-------~~~~~~~ 278 (1472)
-.-++|.|..|+|||+|| ..+.+...+. ++-+.++++-+++..+...-+.+.+++-+. . ...+...
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356889999999999997 5566643221 234567788888775433323333333321 1 0101111
Q ss_pred HHH----HHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 279 LNL----LQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 279 ~~~----~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
..- ....+.+++ +++.+|+|+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 112233333 48899999999944
No 433
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.24 E-value=0.18 Score=54.46 Aligned_cols=62 Identities=26% Similarity=0.242 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHH
Q 000471 196 EEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRIS 261 (1472)
Q Consensus 196 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1472)
.+++..+... .++..+|+|.|.||+|||||..++....+-+++=-.++=|+-|..++--.++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 4555555442 3467899999999999999998887644334443344556666666544444
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.16 E-value=0.56 Score=50.94 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
..++.|.|.+|+||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4699999999999999987665432 1222 3456666333 445555555
No 435
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.14 E-value=0.16 Score=65.10 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=80.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCC------CCCcccHHHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQ------CKDKDDLNLLQEKL 286 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~~l 286 (1472)
.++++|+|+.|.||||+.+.+.... .. .....+|.+...... ..+.++...++... ..-......+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l~--aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-LM--FQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-HH--HHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999886531 00 011112222211000 01111111111100 00011122222222
Q ss_pred HhhhCCCeEEEEEeCCCCC-CHhhHHhh----cccccCCCCCcEEEEEcCChHHHHhhCCCCceeCCCCChH-hHHHHHH
Q 000471 287 KKQLSGNKFLLVLDDVWNE-NYIRWSEL----RCPFVAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSDD-DCLCVLT 360 (1472)
Q Consensus 287 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~ 360 (1472)
.. + ..+-|+++|..... +..+...+ ...+. ..|+.+|+||-..++.........+.-..+..+ +... |
T Consensus 398 ~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p- 471 (771)
T TIGR01069 398 SK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-P- 471 (771)
T ss_pred Hh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-e-
Confidence 22 2 57899999998653 22222223 22222 257899999999887654322211111111111 1110 0
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhcCC
Q 000471 361 QISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGR 403 (1472)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~ 403 (1472)
.+-+..+.+. ...|-+|++++ |+|-.+.--|..+.+.
T Consensus 472 ~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 472 TYKLLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE 508 (771)
T ss_pred EEEECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 0101111111 24577777777 7887777777766544
No 436
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.14 E-value=0.12 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999987765
No 437
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.12 E-value=0.15 Score=53.39 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=56.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCC--CCcccHHHHHHHHHhhhC-
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQC--KDKDDLNLLQEKLKKQLS- 291 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l~- 291 (1472)
++.|+|+.|.||||+.+.+.-.. +-.+-.+.+|.....- ....+++..++.... ........-..++...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 46799999999999999987321 1112212222110000 001111111111100 011111111222333333
Q ss_pred -CCeEEEEEeCCCCCC-HhhHH----hhcccccCCCCCcEEEEEcCChHHHHhhC
Q 000471 292 -GNKFLLVLDDVWNEN-YIRWS----ELRCPFVAGAAGSKIVVTTRNLVVAERMG 340 (1472)
Q Consensus 292 -~k~~LlVlDdv~~~~-~~~~~----~l~~~l~~~~~~s~iivTtR~~~v~~~~~ 340 (1472)
.++-++++|..-... ..+-. .+...+.. ..++.+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 378999999985432 11111 12222221 13678999999988776653
No 438
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.11 E-value=0.22 Score=61.85 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=54.9
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.... ...+++..+|...+ ..+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 46899999998888877542 368899999999999999998742 23346777887663 336667777777
Q ss_pred HhhcC
Q 000471 266 NSVAS 270 (1472)
Q Consensus 266 ~~l~~ 270 (1472)
.+.+.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65544
No 439
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.11 E-value=0.42 Score=52.90 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 000471 216 ISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~ 235 (1472)
|.++|++|+||||+|+++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 440
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.09 E-value=0.31 Score=57.47 Aligned_cols=90 Identities=22% Similarity=0.254 Sum_probs=52.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC-CHHHHHHHHHHhhcCCC------CCCcccHH-----
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF-DVFRISKSILNSVASDQ------CKDKDDLN----- 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 280 (1472)
-.-++|.|.+|+|||||+.++....... +=+.++++-+++.. .+.+++.++...=.... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999887532211 11356677776654 45566666654321110 00111111
Q ss_pred HHHHHHHhhh---CCCeEEEEEeCCC
Q 000471 281 LLQEKLKKQL---SGNKFLLVLDDVW 303 (1472)
Q Consensus 281 ~~~~~l~~~l---~~k~~LlVlDdv~ 303 (1472)
...-.+.+++ +++++|+++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 1222345555 5789999999993
No 441
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.08 E-value=0.63 Score=55.97 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=48.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC----CcccHHHHHHHHH
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK----DKDDLNLLQEKLK 287 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 287 (1472)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+.. .++.. .++.++..... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees~--~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEESA--SQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccccH--HHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 457999999999999999999986422 222356788765443 33322 23444332110 1123444444443
Q ss_pred hhhCCCeEEEEEeCCC
Q 000471 288 KQLSGNKFLLVLDDVW 303 (1472)
Q Consensus 288 ~~l~~k~~LlVlDdv~ 303 (1472)
+ .+.-++|+|.+.
T Consensus 154 ~---~~~~lVVIDSIq 166 (446)
T PRK11823 154 E---EKPDLVVIDSIQ 166 (446)
T ss_pred h---hCCCEEEEechh
Confidence 2 245578888874
No 442
>PRK05973 replicative DNA helicase; Provisional
Probab=92.06 E-value=0.68 Score=49.86 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=32.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHH
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKS 263 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1472)
...++.|.|.+|+|||++|.++.... ..+-..+++++.... ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC--HHHHHHH
Confidence 34689999999999999999887532 122345667766555 3444444
No 443
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.02 E-value=1.1 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 444
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.01 E-value=0.72 Score=55.49 Aligned_cols=54 Identities=26% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC
Q 000471 195 KEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED 254 (1472)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1472)
...+-+.|.. +-..-.++.|.|.+|+|||||+.++..... ..-..++|++..+.
T Consensus 80 i~~LD~vLgG----Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs 133 (454)
T TIGR00416 80 FGELDRVLGG----GIVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEES 133 (454)
T ss_pred cHHHHHHhcC----CccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCC
Confidence 4455555532 223457999999999999999999876322 22235678876543
No 445
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.01 E-value=0.7 Score=52.63 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998863
No 446
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.01 E-value=0.15 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999863
No 447
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.00 E-value=0.84 Score=51.43 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=35.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC-CHHHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF-DVFRISKSI 264 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 264 (1472)
-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3578999999999999999999742 33567788887664 445555554
No 448
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.99 E-value=0.17 Score=56.55 Aligned_cols=42 Identities=29% Similarity=0.237 Sum_probs=35.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED 254 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1472)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4568999999999999999999987 44455788999988766
No 449
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.94 E-value=0.39 Score=61.45 Aligned_cols=130 Identities=18% Similarity=0.116 Sum_probs=69.6
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILN 266 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1472)
.++|....+.++.+....-. .. ..-|.|+|..|+||+++|+.+++... ..-...+.|++..-.. ..+..+++.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a---~~-~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~~-~~~~~elfg 398 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA---KS-SFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYPD-EALAEEFLG 398 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh---Cc-CCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCCh-HHHHHHhcC
Confidence 58899988888887775432 11 23377999999999999999986321 1112234455544322 222233332
Q ss_pred hhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCCC-----------CCcEEEEEcCC
Q 000471 267 SVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAGA-----------AGSKIVVTTRN 332 (1472)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~iivTtR~ 332 (1472)
........... ..+. ....=.|+||++..........+...+..+. ...|||.||..
T Consensus 399 ~~~~~~~~~~~------g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 399 SDRTDSENGRL------SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCcCccCCCC------Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 21110000000 0000 1123458999998876655556655443221 13577777664
No 450
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.94 E-value=0.45 Score=54.34 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=45.0
Q ss_pred cEEEEEEccCCCcHHH-HHHHHhcCcchhccCcceEEEEecC-CCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTT-LAQLVYNDDRVQRHYEIKAWTCVSE-DFDVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1472)
.+||.+||+.|||||| ||+..+.-....++ ..++.++... .....+-++.-++-++.+-. ...+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-
Confidence 6899999999999985 55544431111222 3455555432 22333444444444444432 334445555544433
Q ss_pred CCCeEEEEEeCCCC
Q 000471 291 SGNKFLLVLDDVWN 304 (1472)
Q Consensus 291 ~~k~~LlVlDdv~~ 304 (1472)
++. =+|.+|=+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 233 3555566644
No 451
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.93 E-value=0.29 Score=51.91 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=27.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccC--------cceEEEEecCC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHY--------EIKAWTCVSED 254 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 254 (1472)
.++.|+|++|+||||++.++.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999998887643322222 35678877666
No 452
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.93 E-value=1.3 Score=47.48 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 000471 213 FSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
-.+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 453
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.90 E-value=0.097 Score=54.95 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 454
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.87 E-value=0.098 Score=55.68 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+|+|.|+.|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 455
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.83 E-value=0.52 Score=51.54 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED 254 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1472)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45799999999999999999876421 1 22346788876443
No 456
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.81 E-value=0.13 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 000471 214 SVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 457
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.79 E-value=0.89 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-.+++|+|+.|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 458
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.79 E-value=0.33 Score=57.16 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=54.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC-HHHHHHHHHHhhcCC-------CCCCcccH----H
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD-VFRISKSILNSVASD-------QCKDKDDL----N 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----~ 280 (1472)
-.-++|.|.+|+|||+|+.++..+.. +.+-+.++++-+++... +.++..++...=... ...+..-. -
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35689999999999999999876532 23346778888876653 455555554421111 00011111 1
Q ss_pred HHHHHHHhhhC---CCeEEEEEeCCCC
Q 000471 281 LLQEKLKKQLS---GNKFLLVLDDVWN 304 (1472)
Q Consensus 281 ~~~~~l~~~l~---~k~~LlVlDdv~~ 304 (1472)
.....+.++++ ++++|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12233455553 6899999999943
No 459
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.78 E-value=0.12 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 460
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.74 E-value=0.13 Score=50.84 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=18.5
Q ss_pred EEEEEccCCCcHHHHHHHHh
Q 000471 215 VISINGMGGVGKTTLAQLVY 234 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~ 234 (1472)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 461
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.41 Score=54.16 Aligned_cols=98 Identities=21% Similarity=0.188 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC
Q 000471 195 KEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK 274 (1472)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 274 (1472)
..++-+.|-.. --.-.+|.|-|-+|||||||.-+++.+ ....- .+.+|+..+...-. +--++.++.....
T Consensus 79 ~~EldRVLGGG----~V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Qi---klRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGG----LVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQI---KLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCC----cccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHHH---HHHHHHhCCCccc
Confidence 45555555321 123579999999999999999999873 33333 57777655553322 2234455433221
Q ss_pred ----CcccHHHHHHHHHhhhCCCeEEEEEeCCCCC
Q 000471 275 ----DKDDLNLLQEKLKKQLSGNKFLLVLDDVWNE 305 (1472)
Q Consensus 275 ----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 305 (1472)
...+++.+.+.+.+ .++-++|+|-+...
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~ 180 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQTL 180 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEecccee
Confidence 22344444444444 57889999998553
No 462
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.71 E-value=0.25 Score=55.71 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISK 262 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1472)
.+++.+.|.|||||||+|.+.+- ........++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47999999999999999988654 2222334466666666555554443
No 463
>PRK08149 ATP synthase SpaL; Validated
Probab=91.69 E-value=0.46 Score=55.75 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=49.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC-CCHHHHHHHHHHhhcCC-------CCCCccc----HH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-FDVFRISKSILNSVASD-------QCKDKDD----LN 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----~~ 280 (1472)
-..++|+|..|+|||||++.++.... -+.++...+... .++.++..+........ ...+..- ..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35789999999999999999987432 223333444333 34555666655532211 0101110 11
Q ss_pred HHHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 281 LLQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 281 ~~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
.....+.+++ ++|++|+++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1122233333 48999999999943
No 464
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.68 E-value=0.36 Score=54.97 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 000471 216 ISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~ 236 (1472)
+.+.|++|.||||+|+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 465
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.63 E-value=0.39 Score=57.18 Aligned_cols=90 Identities=21% Similarity=0.159 Sum_probs=47.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceE-EEEecCCCC-HHHHHHHHHHhhcCCCCCCccc----HHHHHHHH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKA-WTCVSEDFD-VFRISKSILNSVASDQCKDKDD----LNLLQEKL 286 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~----~~~~~~~l 286 (1472)
-.-..|+|++|+|||||++.+.+... ..+-++.+ .+-+.+... +.++.+.+-..+-......... ...+.-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999987421 12333433 344444432 3333333211111111111111 11222233
Q ss_pred Hhhh--CCCeEEEEEeCCC
Q 000471 287 KKQL--SGNKFLLVLDDVW 303 (1472)
Q Consensus 287 ~~~l--~~k~~LlVlDdv~ 303 (1472)
.+++ .++.+||++|++-
T Consensus 495 Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHcCCCEEEEEeCch
Confidence 4444 5889999999983
No 466
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.60 E-value=0.25 Score=51.30 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=30.8
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
.+++|-+..+..+.-.... ..-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3578888887777666543 24688999999999999999864
No 467
>PF13245 AAA_19: Part of AAA domain
Probab=91.58 E-value=0.26 Score=42.39 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=16.1
Q ss_pred EEEEEEccCCCcHHHHHHHHh
Q 000471 214 SVISINGMGGVGKTTLAQLVY 234 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~ 234 (1472)
+++.|.|++|.|||+++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578889999999995554443
No 468
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.57 E-value=0.59 Score=45.54 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=42.0
Q ss_pred ccCCCCCccEEeeccCCCccccCC-CCCCCCCccEEecccccccccc-cccCCCCCcccEeeecCCCCCccCCCC--CCC
Q 000471 1260 DLHNLHHLQKIWINYCPNLESFPE-EGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLILEIRGCPSVVSFPED--GFP 1335 (1472)
Q Consensus 1260 ~l~~l~~L~~L~Ls~~~~l~~l~~-~~~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~n~~l~~~p~~--~~~ 1335 (1472)
.|.++++|+.+.+.. .+..++. .|..+++|+.+++.++ +..+ ...|.++++|+.+.+.+ .+..++.. ...
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccc
Confidence 456666677777653 2334433 3455556777766652 2222 23456666677777754 23334333 335
Q ss_pred CCcceeEeccccCCCCCCccccccccccceeee
Q 000471 1336 TNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTI 1368 (1472)
Q Consensus 1336 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~L 1368 (1472)
++|+.+++..+ +. .++...|.++ +|+.+.+
T Consensus 81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp TTECEEEETTT--B-EEHTTTTTT--T--EEE-
T ss_pred ccccccccCcc-cc-EEchhhhcCC-CceEEEE
Confidence 66666666543 22 2222245554 5555554
No 469
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.55 E-value=0.41 Score=55.43 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=55.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcch----hccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHH
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYNDDRV----QRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKDKDDLNLLQEKLK 287 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 287 (1472)
.++=+-|||..|.|||.|.-.+|+...+ +-||. ....++-+.+..-.. ..+.+..+ .
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-~~~~l~~v----a 121 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-QDDPLPQV----A 121 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-CCccHHHH----H
Confidence 4677999999999999999999985433 23442 223333333322111 22333333 3
Q ss_pred hhhCCCeEEEEEeCCCCCCHhhH---HhhcccccCCCCCcEEEEEcCChH
Q 000471 288 KQLSGNKFLLVLDDVWNENYIRW---SELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 288 ~~l~~k~~LlVlDdv~~~~~~~~---~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
+.+.++..||.||.+.-.+..+- ..+...+. ..|. |||+|.+..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRP 168 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCC
Confidence 34455667999999866544432 22222222 2454 555555543
No 470
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.54 E-value=0.48 Score=51.17 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=66.4
Q ss_pred CceeechhHHHHHHHHHhcCC-CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDD-LRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSI 264 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1472)
..++|..-.++.|+..+.+-- ...+.++-|++.+|..|+||.-.|+.++++..-.+- ........
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl--------------~S~~V~~f 147 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL--------------RSPFVHHF 147 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc--------------cchhHHHh
Confidence 347787777777777665421 114567889999999999999999998874211110 00111222
Q ss_pred HHhhcCCCCCCcccHH----HHHHHHHhhh-CCCeEEEEEeCCCCCCHhhHHhhcccc
Q 000471 265 LNSVASDQCKDKDDLN----LLQEKLKKQL-SGNKFLLVLDDVWNENYIRWSELRCPF 317 (1472)
Q Consensus 265 ~~~l~~~~~~~~~~~~----~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l 317 (1472)
.....-+ ....++ +++.+++..+ .-+|-|+|+|+|+.....-.+.+...+
T Consensus 148 vat~hFP---~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfL 202 (344)
T KOG2170|consen 148 VATLHFP---HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFL 202 (344)
T ss_pred hhhccCC---ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhh
Confidence 2222222 122222 3344444433 257999999999877655555555444
No 471
>PRK15453 phosphoribulokinase; Provisional
Probab=91.54 E-value=0.87 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+..+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 472
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.50 E-value=0.88 Score=51.54 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=48.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC-CCCHHHHHHHHHHhhcCC-------CCCCcccHH----
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE-DFDVFRISKSILNSVASD-------QCKDKDDLN---- 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 280 (1472)
...++|+|..|.|||||++.+..... -+..+..-+.. ..++.++....+..-... ..++.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987432 12333344433 334555555554432111 010111111
Q ss_pred HHHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 281 LLQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 281 ~~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
...-.+.+++ ++|.+|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1112223333 48899999999833
No 473
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.44 E-value=0.68 Score=54.48 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=50.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCC-------CCCCcccH----HH
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASD-------QCKDKDDL----NL 281 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----~~ 281 (1472)
-..++|+|..|+|||||++.++..... ...++...-.+...+.+.++..+..-+.. ...+.... ..
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999874321 12233332233355666666555442211 01011111 11
Q ss_pred HHHHHHhhh--CCCeEEEEEeCCCCC
Q 000471 282 LQEKLKKQL--SGNKFLLVLDDVWNE 305 (1472)
Q Consensus 282 ~~~~l~~~l--~~k~~LlVlDdv~~~ 305 (1472)
....+.+++ +++++|+|+||+-.-
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHH
Confidence 222333333 478999999999543
No 474
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=2.8 Score=45.07 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=36.0
Q ss_pred ceeechhHHHHHHHHHhcCC------CCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 187 KVYGREKEKEEIIELLLNDD------LRGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
++.|-|..++.|-+...-.- ......-+-|.++|++|.||+-||++|+..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 47788888888777643210 002233578899999999999999999974
No 475
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.41 E-value=0.65 Score=54.64 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=50.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCC-HHHHHHHHHHhhcCCC------CCCcccHH-----
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD-VFRISKSILNSVASDQ------CKDKDDLN----- 280 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~----- 280 (1472)
-..++|+|..|+|||||++++++... .+..+++-+++... +.++..+.+..-+... ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999986432 23455566665543 4455444443321110 00111111
Q ss_pred HHHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 281 LLQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 281 ~~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
...-.+.+++ +++.+|+++||+-.
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122233444 48899999999933
No 476
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.39 E-value=0.22 Score=49.09 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=27.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecC
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 253 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 253 (1472)
++|.|+|+.|+|||||++.+.+.. .+..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999843 234455555666554
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.38 E-value=0.15 Score=53.37 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000471 214 SVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
++++|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 478
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.37 E-value=0.27 Score=51.14 Aligned_cols=42 Identities=31% Similarity=0.342 Sum_probs=27.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCH
Q 000471 215 VISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV 257 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1472)
.|+|.|-||+||||+|..+.... ...+-..+.-|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCceEEEEeCCCCCCh
Confidence 58999999999999998855421 2222123455666665553
No 479
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.36 E-value=0.19 Score=52.66 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=27.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEE
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTC 250 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 250 (1472)
.+++.|+|+.|+|||||++++.. ....+|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 47899999999999999999987 3445564444444
No 480
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.34 E-value=1.2 Score=47.15 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-.+++|.|+.|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 481
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.29 E-value=1.1 Score=49.50 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=47.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCC-CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHhhhC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF-DVFRISKSILNSVASDQCKDKDDLNLLQEKLKKQLS 291 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1472)
..+++++|.+|+||||+++.+.... ...=..+.+++..... ....-++...+.++.+.. ...+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHh
Confidence 3689999999999999999887532 2111234555543221 122222233333332211 11233444444433211
Q ss_pred -CCeEEEEEeCCCCC
Q 000471 292 -GNKFLLVLDDVWNE 305 (1472)
Q Consensus 292 -~k~~LlVlDdv~~~ 305 (1472)
.+.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24568899988554
No 482
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.28 E-value=0.45 Score=59.51 Aligned_cols=75 Identities=19% Similarity=0.067 Sum_probs=49.1
Q ss_pred CceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHH
Q 000471 186 AKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1472)
.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+.. ....|...+++.-.. .+...+++.++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l-~~~~~~~~~~~~n~~-~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELL-PDEELEDILVYPNPE-DPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHc-CchhheeEEEEeCCC-CCchHHHHHHH
Confidence 46899999888888777542 245599999999999999998732 122333334333322 24445567776
Q ss_pred HhhcC
Q 000471 266 NSVAS 270 (1472)
Q Consensus 266 ~~l~~ 270 (1472)
.+++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 66654
No 483
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.25 E-value=0.37 Score=45.43 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=32.6
Q ss_pred eeechhHHHHHHHHHhcCCC-CCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 000471 188 VYGREKEKEEIIELLLNDDL-RGDDGFSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
++|-+-..+.+++.+..--. ..+.++-|++.+|+.|+|||.+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 55655444444444432100 14567889999999999999998888764
No 484
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.24 E-value=0.15 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 000471 214 SVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 485
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.24 E-value=1.6 Score=43.09 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhhcCCCC-----CCcccHHHHHHHHHhhhCCCeEEEEEeCC----CCCCHhhHHhhcccccCCCCCcEE
Q 000471 256 DVFRISKSILNSVASDQC-----KDKDDLNLLQEKLKKQLSGNKFLLVLDDV----WNENYIRWSELRCPFVAGAAGSKI 326 (1472)
Q Consensus 256 ~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~l~~~l~~~~~~s~i 326 (1472)
+.....+..+++++.... .+...-++..-.+.+.+...+-+++-|.- +...-....++...+ ....|...
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 455667777777765421 12233344555677778888888888864 222112233333322 23578889
Q ss_pred EEEcCChHHHHhhCC
Q 000471 327 VVTTRNLVVAERMGA 341 (1472)
Q Consensus 327 ivTtR~~~v~~~~~~ 341 (1472)
++.|-++.++..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 999999999987743
No 486
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.23 E-value=1.3 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 000471 213 FSVISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 368999999999999999999864
No 487
>COG4240 Predicted kinase [General function prediction only]
Probab=91.20 E-value=0.67 Score=47.65 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhc----CCCCCCcccHHHHHHHH
Q 000471 211 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVA----SDQCKDKDDLNLLQEKL 286 (1472)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~~l 286 (1472)
+++-+++|.|+-|.||||+|..+++....+.- ..++-.+..+-+-...-...++++.. ........+..-....+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45789999999999999999999984332222 34555554443333333344455531 12222456677777777
Q ss_pred HhhhCCCe
Q 000471 287 KKQLSGNK 294 (1472)
Q Consensus 287 ~~~l~~k~ 294 (1472)
....+++.
T Consensus 127 nai~~g~~ 134 (300)
T COG4240 127 NAIARGGP 134 (300)
T ss_pred HHHhcCCC
Confidence 77766663
No 488
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.13 E-value=0.26 Score=53.13 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=78.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCC--CcccHHHHHHHHHhhh
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCK--DKDDLNLLQEKLKKQL 290 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l 290 (1472)
.+++.|+|+.|.||||+.+.+.... +- +....+|.+... .......++..++..... .......-...+...+
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~~-~l--a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il 104 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVIV-LM--AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAIL 104 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHH-HH--HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHHH
Confidence 5799999999999999998876321 11 111112222110 001122222222221110 1111111112222223
Q ss_pred --CCCeEEEEEeCCCC---CC---HhhHHhhcccccCCCCCcEEEEEcCChHHHHhhCCCCc---eeCCCCChH--hHHH
Q 000471 291 --SGNKFLLVLDDVWN---EN---YIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMGADPV---YQLKELSDD--DCLC 357 (1472)
Q Consensus 291 --~~k~~LlVlDdv~~---~~---~~~~~~l~~~l~~~~~~s~iivTtR~~~v~~~~~~~~~---~~l~~L~~~--~~~~ 357 (1472)
...+-|+++|.... .. ...|..+ ..+.. ..|+.+|+||-..++...+..... .++.....+ +.+.
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~ 182 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLT 182 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEe
Confidence 35688999999932 11 1122222 22222 246789999988777665432221 122111111 1111
Q ss_pred HHHhhhcCCCCCCCCccHHHHHHHHHHHhCCChhHHHHHHhhhc
Q 000471 358 VLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLR 401 (1472)
Q Consensus 358 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~ 401 (1472)
|..+. ..+. . -...|-++++++ |+|-.+..-|..+.
T Consensus 183 -~~Y~l-~~G~--~---~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 183 -MLYKV-EKGA--C---DQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred -EEEEE-eeCC--C---CCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 11111 1110 0 124466677666 88888777776554
No 489
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.10 E-value=0.54 Score=55.54 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=49.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCC------CCCcccHH-----H
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQ------CKDKDDLN-----L 281 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~-----~ 281 (1472)
-..++|.|..|+|||||++.++..... -..+++..-.+...+.++.+.+...-.... ..+..... .
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 468899999999999999999864322 123344333344455555555543311110 00111111 1
Q ss_pred HHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 282 LQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 282 ~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
....+.+++ +++++|+++||+-.
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233444 48899999999933
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.05 E-value=0.19 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 000471 212 GFSVISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
...+|+|+|++|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 491
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.04 E-value=0.89 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 000471 216 ISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~ 236 (1472)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999863
No 492
>PRK06217 hypothetical protein; Validated
Probab=91.00 E-value=0.15 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
.|.|.|++|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 493
>PRK13949 shikimate kinase; Provisional
Probab=90.95 E-value=0.16 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 000471 215 VISINGMGGVGKTTLAQLVYND 236 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~~ 236 (1472)
-|.|+|++|+||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999863
No 494
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.94 E-value=1.1 Score=45.63 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=44.3
Q ss_pred EEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhh--cCCCCCCcccHHHHHHHHHhhhCCC
Q 000471 216 ISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSV--ASDQCKDKDDLNLLQEKLKKQLSGN 293 (1472)
Q Consensus 216 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1472)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+ +.+.|.... .............+.+.+.+. + +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 678999999999999998753 22356677666666543 333333322 222221112222333444222 2 2
Q ss_pred eEEEEEeCC
Q 000471 294 KFLLVLDDV 302 (1472)
Q Consensus 294 ~~LlVlDdv 302 (1472)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 495
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=90.92 E-value=1 Score=55.35 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=69.4
Q ss_pred ceeechhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHH
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILN 266 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1472)
.++|......++.+.+.... .....+.|.|..|+||+++|+.+..... ......+-+++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 48888877777777765421 1223578999999999999999986321 11222333444433 223333222
Q ss_pred hhcCCCCCCcccHHHHHHHHHhhhCCCeEEEEEeCCCCCCHhhHHhhcccccCC-----------CCCcEEEEEcCCh
Q 000471 267 SVASDQCKDKDDLNLLQEKLKKQLSGNKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVVTTRNL 333 (1472)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iivTtR~~ 333 (1472)
++.... ....... ......-....-.|+||+|..........+...+..+ ..+.|||.||...
T Consensus 206 -fg~~~~-~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 -FGHEKG-AFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred -cCCCCC-CCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 111110 0000000 0000001112334889999887666666665544322 1245888888643
No 496
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.90 E-value=0.54 Score=45.82 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=48.9
Q ss_pred cccCCCCCccEEeeccCCCccccCC-CCCCCCCccEEecccccccccccccCCCCCcccEeeecCCCCCccCCCC--CCC
Q 000471 1259 ADLHNLHHLQKIWINYCPNLESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVSFPED--GFP 1335 (1472)
Q Consensus 1259 ~~l~~l~~L~~L~Ls~~~~l~~l~~-~~~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~n~~l~~~p~~--~~~ 1335 (1472)
..|.++++|+.+++.++ +..++. .+..+++|+.+.+.+ .....-...|..+++|+.+++..+ +..++.. ...
T Consensus 29 ~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~ 103 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC 103 (129)
T ss_dssp TTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT-
T ss_pred hhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC
Confidence 45788888888888773 555443 456666889998865 322233346677889999998664 4455443 344
Q ss_pred CCcceeEeccccCCCCCCccccccccccc
Q 000471 1336 TNLQSLEVRGLKISKPLPEWGFNRFTSLR 1364 (1472)
Q Consensus 1336 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 1364 (1472)
+|+.+.+.. .+.. ++...|.++++|+
T Consensus 104 -~l~~i~~~~-~~~~-i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 104 -NLKEINIPS-NITK-IEENAFKNCTKLK 129 (129)
T ss_dssp -T--EEE-TT-B-SS-----GGG------
T ss_pred -CceEEEECC-CccE-ECCccccccccCC
Confidence 888888775 3333 3334788877764
No 497
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.90 E-value=0.69 Score=54.37 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=47.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCCCCHHHHHHHHHHhhcCCC------CCCcccHH-----H
Q 000471 213 FSVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFRISKSILNSVASDQ------CKDKDDLN-----L 281 (1472)
Q Consensus 213 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~-----~ 281 (1472)
-..++|+|..|+|||||++.+....+. ...++.....+.-.+.++..+.+..-.... ..+..... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999864321 222222222233344455554433321110 00111111 1
Q ss_pred HHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 282 LQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 282 ~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
....+.+++ +++++|+++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 122234444 48899999999833
No 498
>PRK05922 type III secretion system ATPase; Validated
Probab=90.86 E-value=0.77 Score=53.95 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=47.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcchhccCcceEEEEecCC-CCHHHHHHHHHHhhcCCCC------CCccc-H----HH
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-FDVFRISKSILNSVASDQC------KDKDD-L----NL 281 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~------~~~~~-~----~~ 281 (1472)
..++|+|..|+|||||.+.+.... ..+....+-+++. ......+.+.......... .+... . ..
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998642 1233344334433 2333444444332221110 01111 1 11
Q ss_pred HHHHHHhhh--CCCeEEEEEeCCCC
Q 000471 282 LQEKLKKQL--SGNKFLLVLDDVWN 304 (1472)
Q Consensus 282 ~~~~l~~~l--~~k~~LlVlDdv~~ 304 (1472)
..-.+.+++ +++++|+++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 122234444 48899999999943
No 499
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.85 E-value=0.16 Score=51.05 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000471 215 VISINGMGGVGKTTLAQLVYN 235 (1472)
Q Consensus 215 vv~I~G~gGiGKTtLa~~v~~ 235 (1472)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 500
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=90.83 E-value=0.66 Score=57.71 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=59.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcch-hccCcceEEEEecCCCCHHHHHHHHHHhhcCCCCCC------cccHHHHHHHH
Q 000471 214 SVISINGMGGVGKTTLAQLVYNDDRV-QRHYEIKAWTCVSEDFDVFRISKSILNSVASDQCKD------KDDLNLLQEKL 286 (1472)
Q Consensus 214 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~~l 286 (1472)
++..|.|.+|.||||+++.+...... ...=...+.+......-...+...+-..+..-...+ ......+.+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 58899999999999999888753211 111113444444443333344433332221100000 01111222222
Q ss_pred HhhhCC--------Ce---EEEEEeCCCCCCHhhHHhhcccccCCCCCcEEEEEcCChH
Q 000471 287 KKQLSG--------NK---FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV 334 (1472)
Q Consensus 287 ~~~l~~--------k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtR~~~ 334 (1472)
.....+ .+ -++|+|.+.-.+......+..+++ .++|+|+---..+
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 111111 11 289999987766555666666665 4678887655433
Done!