Query 000471
Match_columns 1472
No_of_seqs 551 out of 5716
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 17:41:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000471.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_248-252//hhsearch_pdb/000471hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 455.5 27.9 108 590-698 69-183 (768)
2 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 414.7 24.2 317 189-526 131-473 (549)
3 3rgz_A Protein brassinosteroid 1.0 1 1 406.1 24.8 676 597-1465 49-766 (768)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 367.5 23.6 312 181-524 119-452 (1249)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 356.2 41.4 215 1241-1459 405-638 (680)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 335.0 28.4 82 598-680 32-115 (606)
7 1vt4_I APAF-1 related killer D 1.0 1 1 334.8 18.1 286 187-517 129-436 (1221)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 334.3 36.0 98 598-698 25-126 (680)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 329.1 32.8 174 1259-1458 394-574 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 310.3 31.6 104 1007-1113 255-361 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=455.54 Aligned_cols=108 Identities=19% Similarity=0.053 Sum_probs=80.2
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCH--HHHHCCCCCEEECCCCCCHHHHHHHH-
Q ss_conf 9997234995119983687887557856478785847741786453-3453--23401665599537875322301311-
Q 000471 590 LQRLLNHLPRLRVFSLRGCGNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPE--SINSLYNLHTILLEDCHQLKKLCKDM- 665 (1472)
Q Consensus 590 ~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~-~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i- 665 (1472)
++..+..+++|++++++.+ .+..+|..|+.+.+|++|+|++|.+. .+|. .++++.+|++|++++|......|..+
T Consensus 69 l~~~l~~L~~L~~l~~~~~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHHHTTTCTTCCEEECTTS-CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred CCHHHHCCCCCCCCCCCCC-CCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 6965731680224678688-867870332457889989898985787078967872788999898968826774797785
Q ss_pred CCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCCC
Q ss_conf 04487752314899985438874---3455554544
Q 000471 666 GNLRKLHHLRNSTANSLKEMPKG---FGKLTSLLTL 698 (1472)
Q Consensus 666 ~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L 698 (1472)
.++++|++|++++|......|.. ++++++|++|
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEE
T ss_conf 638899989897983588587155664358988989
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=414.73 Aligned_cols=317 Identities=17% Similarity=0.233 Sum_probs=263.4
Q ss_pred EECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHC--CCCHHCCCCCEEEEEECCCC--CHHHHHHHH
Q ss_conf 10224799999998259989999947999974698809999999955--70001237623899936777--877899999
Q 000471 189 YGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYN--DDRVQRHYEIKAWTCVSEDF--DVFRISKSI 264 (1472)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 264 (1472)
+||+.++++|.++|... .....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 78417999999987251---578962899986999988999999998406987466995799997898787999999999
Q ss_pred HHHHCCCCC------CCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 996207988------99331999999999660998-49999827998797408752045668999958999728948997
Q 000471 265 LNSVASDQC------KDKDDLNLLQEKLKKQLSGN-KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAE 337 (1472)
Q Consensus 265 l~~l~~~~~------~~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~~~~ 337 (1472)
+.+++.... .+..+.+.+...+++.++++ ||||||||||+.+...|... .||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCC--------CCCEEEEECCCHHHHH
T ss_conf 99985375534555533146999999999997689848999979997144154326--------9988999749779999
Q ss_pred HHC-CCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 609-9890637999957599999852208999788841799999999981997368999985531899945699998200
Q 000471 338 RMG-ADPVYQLKELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTD 416 (1472)
Q Consensus 338 ~~~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~ 416 (1472)
.++ ...+|++++|+.+++|+||.+.+++... ++.+.+++++|+++|+|+||||+++|+.++.+ . ..|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHHHHHH
T ss_conf 70889738989998989999999987448998---55689999999999599839999999984434-4-8999875787
Q ss_pred CCCCCCCCCCCCHHHCCCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCHHHH
Q ss_conf 23457888420021013589966675851-----------42457888743968899999980--984334688639999
Q 000471 417 IWNLRDSDILPALRVSYHFLPPQLKQCFA-----------YCSLFPKDYEFQEEEIILLWTAE--GLLDQEYNGRKMEDL 483 (1472)
Q Consensus 417 ~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~s~fp~~~~i~~~~l~~~w~a~--g~i~~~~~~~~~~~~ 483 (1472)
.+......+..++.+||+.||+++|.||+ |||+||+++.|+ +..|+|+ |++.....+...+++
T Consensus 355 l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 355 LESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp HHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred HHCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHH
T ss_conf 6136477789897516202267999997526522336743235608997666----533110135500267789999999
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCEEEEHHHHHHHHHHHCCCEE
Q ss_conf 9999999973898620389-999089803588999986124179
Q 000471 484 GREFVRELHSRSLFQQSSK-DASRFVMHDLINDLARWAAGELYF 526 (1472)
Q Consensus 484 ~~~~~~~L~~~~ll~~~~~-~~~~~~~H~lv~~~~~~~~~~~~~ 526 (1472)
++ |+++|+++||++.... ...+|+|||+||+||+.++.+++.
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99-99999875883671479804999676999999999889899
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=406.08 Aligned_cols=676 Identities=17% Similarity=0.091 Sum_probs=314.1
Q ss_pred CCCCEEEEECCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCEEECCCCCCHHHHHH--HHCCCCCC
Q ss_conf 99511998368788755---78564787858477417864533453234016655995378753223013--11044877
Q 000471 597 LPRLRVFSLRGCGNIFN---LPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCHQLKKLCK--DMGNLRKL 671 (1472)
Q Consensus 597 l~~Lr~L~L~~~~~~~~---lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L 671 (1472)
-.+++.|+|+++..... +|.++..+++|++++++.+.+..+|..++++++|++|++++|.....+|. .++++++|
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 99278987789986775576696573168022467868886787033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 523148999854388743-4555545449568267988541022383135883489323378991111142028877887
Q 000471 672 HHLRNSTANSLKEMPKGF-GKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVKDVGDASEAQLNNKVNLE 750 (1472)
Q Consensus 672 ~~L~l~~~~~~~~~p~~i-~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 750 (1472)
++|++++|.....+|..+ .++++|++|.... . .+. ......
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~---n---~l~------------------------~~~~~~-------- 170 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA---N---SIS------------------------GANVVG-------- 170 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCS---S---CCE------------------------EETHHH--------
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCC---C---CCC------------------------CCCCHH--------
T ss_conf 98989688267747977856388999898979---8---358------------------------858715--------
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCC-CCCCCCCCCCC
Q ss_conf 07987227765685302579977002889999890899732799998464788766621788858899-99999898787
Q 000471 751 ALLLKWSARDVQNLDQCEFETHVLSVLKPHRDVQELTITGYGGTKFPIWLGDSSFSKLARLELRRCTS-TSLPSVGQLPF 829 (1472)
Q Consensus 751 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~-~~l~~l~~l~~ 829 (1472)
...+..+++|+.|+++++.+...... ..+++|+.|++++|.+ ..+|.++.+++
T Consensus 171 -----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 224 (768)
T 3rgz_A 171 -----------------------WVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSA 224 (768)
T ss_dssp -----------------------HHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCS
T ss_pred -----------------------HHHHCCCCCCCEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf -----------------------56643589889898978803465784---5478689898928827887711126999
Q ss_pred CCCEEECCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 56023067888418474014798877888732885357633322222788873345487434764347847526899988
Q 000471 830 LKELRISGMDGVKSVGSEFYGNSRSVPFPSLETLSFFDMREWEEWIPCGAGEEVDEVFPKLRKLSLFHCHKLQGTLPKRL 909 (1472)
Q Consensus 830 L~~L~L~~~~~~~~i~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~~ 909 (1472)
|++|++++|.....++..+.. +++|++|.+.++.- ....+. ..+++|++|++++|. +++.+|..+
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l-~~~~~~-------~~l~~L~~L~L~~n~-l~~~ip~~~ 289 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAIST------CTELKLLNISSNQF-VGPIPP-------LPLKSLQYLSLAENK-FTGEIPDFL 289 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTT------CSSCCEEECCSSCC-EESCCC-------CCCTTCCEEECCSSE-EEESCCCCS
T ss_pred CCEEECCCCCCCCCCCHHHHC------CCCCCEEECCCCCC-CCCCCC-------CCCCCCCEEECCCCC-CCCCCCHHH
T ss_conf 998979488587816577744------88889898988866-571672-------436878989791785-577258888
Q ss_pred CCCCEEEECCCCCCHHCCCCCCCCCEEEECCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 98665899224771001479997537998178970103875431121111111012358876235656628841588822
Q 000471 910 LLLETLVIKSCQQLIVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVRKQAYFWRSETRLPQDIRSLNRLQISRCPQLL 989 (1472)
Q Consensus 910 ~~L~~L~i~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 989 (1472)
...+++|++|++++|......+.. ...+++|+.|++++|.-..
T Consensus 290 -----------------~~~~~~L~~L~Ls~n~l~~~~p~~--------------------~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 290 -----------------SGACDTLTGLDLSGNHFYGAVPPF--------------------FGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp -----------------CTTCTTCSEEECCSSEEEECCCGG--------------------GGGCTTCCEEECCSSEEEE
T ss_pred -----------------HHHCCCCCEEECCCCCCCCCCCHH--------------------HHCCCCCCEEECCCCCCCC
T ss_conf -----------------844686889989689677842367--------------------7558776677897885257
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCC-CCCEEEECCCCCCCCCCCC-CC--CCCCCEEEECCCCC
Q ss_conf 22211123467999998642688324889775410104899-8648996257985334888-88--99744698427999
Q 000471 990 SLVTEEEHDQQQPESPCRLQFLKLSKCEGLTRLPQALLTLS-SLTEMRISGCASLVSFPQA-AL--PSHLRTVKIEDCNA 1065 (1472)
Q Consensus 990 ~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~-~~--~~~L~~L~l~~~~~ 1065 (1472)
.+ +...+..+++|+.|++++|...+.+|..+..++ +|+.|++++|.....++.. .. +++|+.|++++|..
T Consensus 333 ~i------p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 333 EL------PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp EC------CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CC------CHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC
T ss_conf 37------978872488887884847843762309898632277199862787478767666533247761898977846
Q ss_pred CCCCHHHHHCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCC
Q ss_conf 87781433116888855388615999875799-99999953899822788666852111289886560765245773210
Q 000471 1066 LESLPEAWMHNSNSSLESLKIRNCNSLVSFPE-VALPSQLRTVKIEYCNALISLPEAWMQNSNTSLESLRIKGCDSLKYI 1144 (1472)
Q Consensus 1066 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 1144 (1472)
...+|..+.. +++|+.|++++|.....+|. +..+++|+.|++++|......|..+ ..+++|+.|++++|......
T Consensus 407 ~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 407 TGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp EEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCC
T ss_pred CCCCCHHHHC--CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCEEEEECCCCCCCCC
T ss_conf 5424877756--8987989895884668546777449988989897881547189788--28777329990199513758
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 11149975445776022452101254332456788774321367888633333222334654234457998876666588
Q 000471 1145 ARIQLPPSLKRLIVSRCWNLRTLIGEQDICSSSRGCTSLTYFSSENELPTMLEHLQVRFCSNLAFLSRNGNLPQALKYLR 1224 (1472)
Q Consensus 1145 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~L~~L~ 1224 (1472)
+ ......++|+.|+
T Consensus 483 p------------------------------------------------------------------~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 483 P------------------------------------------------------------------SGLSNCTNLNWIS 496 (768)
T ss_dssp C------------------------------------------------------------------GGGGGCTTCCEEE
T ss_pred C------------------------------------------------------------------HHHHCCCCCCEEE
T ss_conf 8------------------------------------------------------------------7881699899897
Q ss_pred ECCCCCCCCCCCHHC-CCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCC---
Q ss_conf 503334313300005-6873222100113466686234788876487602488864248998788884489323564---
Q 000471 1225 VEDCSKLESLAERLD-NTSLEEITISVLENLKSLPADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCE--- 1300 (1472)
Q Consensus 1225 l~~c~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~--- 1300 (1472)
+++|.....+|..+. .++|+.|++++|...+.+|..+..+++|+.|++++|+..+.+|..+.....+..+.+..+.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCC
T ss_conf 53995189687688568999989897894337488777088989989898884688279578604212232013454211
Q ss_pred -------------------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf -------------------55446444788876457630189998448999-9989966367436468788871223655
Q 000471 1301 -------------------NLKALPNCMHNLTSLLILEIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRF 1360 (1472)
Q Consensus 1301 -------------------~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l 1360 (1472)
..+..+..+..++.+..+++..+..-+.+|.. ..+++|+.|++++|.+.+.+|. .+.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l 655 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSM 655 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHHCC
T ss_conf 11344432222332221001355632320023211001133100462743340335665797858801555877-88414
Q ss_pred CCCCEEEECCCCCCCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 653314511699999899998--866561442577776765454888776761303377788778998886644602044
Q 000471 1361 TSLRRFTICGGCPDLVSPPPF--PASLTNLWISDMPDLESISSIGENLTSLETLRLFNCPKLKYFPEQGLPKSLSRLSIH 1438 (1472)
Q Consensus 1361 ~~L~~L~L~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~i~ 1438 (1472)
+.|+.|+|++|......+..+ ..+|+.|++++|...+.+|..+.+++.|+.|++++|+..+.+|..+...++....+.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHC
T ss_conf 15787848688038878967847778998989788023868867757887897879688155608996010248977756
Q ss_pred CCCCHHH----HHCCCCCCCCCCCCCCCEEE
Q ss_conf 8901488----63259999888435776699
Q 000471 1439 NCPLIEK----RCRKDEGKYWPMISHLPRVL 1465 (1472)
Q Consensus 1439 ~~~~l~~----~~~~~~~~~w~~~~~~~~~~ 1465 (1472)
+||.||. .|....+.+|++++|+|.++
T Consensus 736 gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 736 NNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SCTEEESTTSCCCCSCC--------------
T ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9832108877678887668889888765667
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=367.48 Aligned_cols=312 Identities=20% Similarity=0.332 Sum_probs=246.5
Q ss_pred CCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCH-HCCC-CCEEEEEECCCCC--
Q ss_conf 78767711102247999999982599899999479999746988099999999557000-1237-6238999367778--
Q 000471 181 SLVNEAKVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHY-EIKAWTCVSEDFD-- 256 (1472)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~-- 256 (1472)
.+.....||||++++++|.++|... .+..++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHC----CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf 7999864125799999999998613----588777999918988888999998607567886278817999978857267
Q ss_pred HHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHCCC--EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 77899999996207988---99331999999999660998--49999827998797408752045668999958999728
Q 000471 257 VFRISKSILNSVASDQC---KDKDDLNLLQEKLKKQLSGN--KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTR 331 (1472)
Q Consensus 257 ~~~~~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiiTtR 331 (1472)
....+..++..+..... ....+.+.+...++..+.++ |+||||||+|+. ..|..+ .+|++||+|||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHH-------CCCCEEEEECC
T ss_conf 999999999986553033347887778999999999735678789999567997--788763-------68978999927
Q ss_pred CHHHHHH-HCCCCCEECCC-CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9489976-09989063799-995759999985220899978884179999999998199736899998553189994569
Q 000471 332 NLVVAER-MGADPVYQLKE-LSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDW 409 (1472)
Q Consensus 332 ~~~~~~~-~~~~~~~~l~~-l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w 409 (1472)
++.++.. ......+.+.+ |++++++++|...++... +...+.+++|+++|+|+||||+++|++++.+. ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH-----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHH
T ss_conf 78998763488437982588887889999998657981-----34838899999984997799999999862480--579
Q ss_pred HHHHHHCCCCC----CC------CCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99982002345----78------884200210135899666758514245788874396889999998098433468863
Q 000471 410 EFVLKTDIWNL----RD------SDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRK 479 (1472)
Q Consensus 410 ~~~~~~~~~~~----~~------~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~l~~~w~a~g~i~~~~~~~~ 479 (1472)
...++...... .. ..+..++.+||+.|++++|.||+|||+||+++.|+++.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------
T ss_conf 999999865044303465564467799999989986799999999972813799751899999885898-----------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCC-CCCEEEEHHHHHHHHHHHCCC
Q ss_conf 999999999999738986203899-990898035889999861241
Q 000471 480 MEDLGREFVRELHSRSLFQQSSKD-ASRFVMHDLINDLARWAAGEL 524 (1472)
Q Consensus 480 ~~~~~~~~~~~L~~~~ll~~~~~~-~~~~~~H~lv~~~~~~~~~~~ 524 (1472)
++.++.++++|+++||++....+ ..+|+|||+||+|++..+.++
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf -889999999997446338963798118996689999987450678
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=356.19 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=117.3
Q ss_pred CCCCHHHHCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCE
Q ss_conf 873222100113466686-23478887648760248886424899878888448932356455--446444788876457
Q 000471 1241 TSLEEITISVLENLKSLP-ADLHNLHHLQKIWINYCPNLESFPEEGLPSTKLTELTIYDCENL--KALPNCMHNLTSLLI 1317 (1472)
Q Consensus 1241 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l--~~l~~~l~~l~~L~~ 1317 (1472)
++|+.|++++|...+.++ ..+.++++|++|++++|......+..+..+++|+.|++++|... ...|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 88888867787575435755325754612784489975422764550075431011014644225667764555787899
Q ss_pred EEECCCCCCCCCCCC--CCCCCCCEEEECCCCCCCCC-------CCCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCC
Q ss_conf 630189998448999--99899663674364687888-------7122365565331451169999989999--886656
Q 000471 1318 LEIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPL-------PEWGFNRFTSLRRFTICGGCPDLVSPPP--FPASLT 1386 (1472)
Q Consensus 1318 L~l~~n~~l~~~~~~--~~~~~L~~L~l~~n~~~~~~-------~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~L~ 1386 (1472)
|++++|. ++.++.. ..+++|++|++++|.+.... +...+..+++|+.|+|++|......... ...+|+
T Consensus 485 L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 485 LDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EECCCCC-CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 9899998-776794463455346888588997300000004677414233799888888999978877977734666752
Q ss_pred CEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCC---CCCCCCEECCCCCCCHHHHHCC-CCCCCCCCCC
Q ss_conf 14425777767654548-887767613033777887789988---8664460204489014886325-9999888435
Q 000471 1387 NLWISDMPDLESISSIG-ENLTSLETLRLFNCPKLKYFPEQG---LPKSLSRLSIHNCPLIEKRCRK-DEGKYWPMIS 1459 (1472)
Q Consensus 1387 ~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~l~~l~~~~---~~~~L~~L~i~~~~~l~~~~~~-~~~~~w~~~~ 1459 (1472)
.|++++| .+..++... .++++|+.|++++| .++.+++.. ..++|+.+++++||+.|+ |.. .|+..|....
T Consensus 564 ~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~~~~~~~~~~~~~ 638 (680)
T 1ziw_A 564 IIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT-CESIAWFVNWINET 638 (680)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC-CCCCSSEECCSSCC
T ss_pred EEECCCC-CCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCCCCCCCC-CCCHHHHHHHHHHC
T ss_conf 2389999-777679768378988888989999-687059668301146657798318970257-76689999998736
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=334.99 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCCEEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC-CHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 951199836878875578-5647878584774178645334-53234016655995378753223013110448775231
Q 000471 598 PRLRVFSLRGCGNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCHQLKKLCKDMGNLRKLHHLR 675 (1472)
Q Consensus 598 ~~Lr~L~L~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 675 (1472)
+.+++|+|++| .+..++ ..|.++++|++|++++|.+..+ |..|.++++|++|++++|......|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCCEEECCCC-CCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 87678878889-75773754555776674886887736643977730601068867879856304852207865378887
Q ss_pred CCCCC
Q ss_conf 48999
Q 000471 676 NSTAN 680 (1472)
Q Consensus 676 l~~~~ 680 (1472)
+++|.
T Consensus 111 L~~n~ 115 (606)
T 3vq2_A 111 AVETK 115 (606)
T ss_dssp CTTSC
T ss_pred CCCCC
T ss_conf 03775
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=334.81 Aligned_cols=286 Identities=20% Similarity=0.232 Sum_probs=227.3
Q ss_pred CEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCHHCCCCC-EEEEEECCCCCHHHHHHHHH
Q ss_conf 11102247999999982599899999479999746988099999999557000123762-38999367778778999999
Q 000471 187 KVYGREKEKEEIIELLLNDDLRGDDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHYEI-KAWTCVSEDFDVFRISKSIL 265 (1472)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il 265 (1472)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 77892899999999974358-----9718999769996679999999971498874899389998289999999999999
Q ss_pred HHHCCCC---CC-------CCCCHHHHHHHHHHHH---CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCC
Q ss_conf 9620798---89-------9331999999999660---998499998279987974087520456689999589997289
Q 000471 266 NSVASDQ---CK-------DKDDLNLLQEKLKKQL---SGNKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 332 (1472)
Q Consensus 266 ~~l~~~~---~~-------~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiiTtR~ 332 (1472)
..++... .. ...+.+.+...+++.+ .++|+||||||+|+. ..|+.+ + .||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHH----C---CCEEEEEECCC
T ss_conf 99862272102200134679999999999999999850478879987186818--999864----7---98299994437
Q ss_pred HHHHHHHCCCCCEECC------CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-C
Q ss_conf 4899760998906379------99957599999852208999788841799999999981997368999985531899-9
Q 000471 333 LVVAERMGADPVYQLK------ELSDDDCLCVLTQISLGARDFTRHLSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD-D 405 (1472)
Q Consensus 333 ~~~~~~~~~~~~~~l~------~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~ 405 (1472)
+.++..+.....+.++ +|+.+|+|+||.+.. +.. . .+...+| |+|+||||+++|+.++.+. .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC----H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCC
T ss_conf 3799866897089946865568969999999999974-998----8---9999999---698999999999998488997
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 45699998200234578884200210135899666-75851424578887439688999999809843346886399999
Q 000471 406 PRDWEFVLKTDIWNLRDSDILPALRVSYHFLPPQL-KQCFAYCSLFPKDYEFQEEEIILLWTAEGLLDQEYNGRKMEDLG 484 (1472)
Q Consensus 406 ~~~w~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~s~fp~~~~i~~~~l~~~w~a~g~i~~~~~~~~~~~~~ 484 (1472)
...|... ....+..++.+||+.|+++. |.||++||+||+++.|+.+.++.+|+++| ++.+
T Consensus 344 ~eeW~~~--------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedA 404 (1221)
T 1vt4_I 344 WDNWKHV--------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDV 404 (1221)
T ss_dssp HHHHHHC--------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHH
T ss_pred HHHHHCC--------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HHHH
T ss_conf 9998669--------86189999999998488999999999971779999877999998766778-----------8999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHH
Q ss_conf 999999973898620389999089803588999
Q 000471 485 REFVRELHSRSLFQQSSKDASRFVMHDLINDLA 517 (1472)
Q Consensus 485 ~~~~~~L~~~~ll~~~~~~~~~~~~H~lv~~~~ 517 (1472)
+.++++|+++||++.. ....+|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHCCEEEE-CCCCEEEEHHHHHHHH
T ss_conf 9999999961988986-8999898609999985
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=334.30 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC-CHHHHHCCCCCEEECCCCCCHHHHHH-HHCCCCCCCEE
Q ss_conf 951199836878875578-5647878584774178645334-53234016655995378753223013-11044877523
Q 000471 598 PRLRVFSLRGCGNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCHQLKKLCK-DMGNLRKLHHL 674 (1472)
Q Consensus 598 ~~Lr~L~L~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L 674 (1472)
+.+++|+|++| .+..+| ..|+++++|++|++++|.+..+ |..+.++++|++|++++|. +..+|. .|.++++|++|
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCCCEEECCCC-CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCEE
T ss_conf 88768889899-7787597887178767588788996485697787406676888899985-675685453038888989
Q ss_pred ECCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 148999854388-743455554544
Q 000471 675 RNSTANSLKEMP-KGFGKLTSLLTL 698 (1472)
Q Consensus 675 ~l~~~~~~~~~p-~~i~~L~~L~~L 698 (1472)
++++|. +..++ ..++++++|++|
T Consensus 103 ~L~~n~-l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 103 HLMSNS-IQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp ECCSSC-CCCCCSCTTTTCTTCCEE
T ss_pred ECCCCC-CCCCCHHHCCCCCCCCEE
T ss_conf 898996-685396674156788889
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=329.12 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=86.9
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCC---CC
Q ss_conf 23478887648760248886424899-87888844893235645544644478887645763018999844-899---99
Q 000471 1259 ADLHNLHHLQKIWINYCPNLESFPEE-GLPSTKLTELTIYDCENLKALPNCMHNLTSLLILEIRGCPSVVS-FPE---DG 1333 (1472)
Q Consensus 1259 ~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~n~~l~~-~~~---~~ 1333 (1472)
..+..+++|+.|++++|......+.. +..+++|++|++++|......|..+..+++|++|++++|..... ++. ..
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHC
T ss_conf 87347745776878888677756521241765588898989855776877873788788898989988854345431240
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 98996636743646878887122365565331451169999989999886656144257777676545488877676130
Q 000471 1334 FPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLETLR 1413 (1472)
Q Consensus 1334 ~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 1413 (1472)
.+++|++|++++|.+.+..+. .|..+++|+.|+| ++|......+..+.+++.| .|+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L----------------------s~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDL----------------------SHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC----------------------CSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCCCCCEEECCCCCCCCCCHH-HHCCCCCCCEEEC----------------------CCCCCCCCCHHHHCCCCCC-EEE
T ss_conf 488766887999966706864-6326567888989----------------------8980686896684756651-898
Q ss_pred CCCCCCCCCCCCC--CCCCCCCEECCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 3377788778998--88664460204489014886325999988843
Q 000471 1414 LFNCPKLKYFPEQ--GLPKSLSRLSIHNCPLIEKRCRKDEGKYWPMI 1458 (1472)
Q Consensus 1414 l~~~~~l~~l~~~--~~~~~L~~L~i~~~~~l~~~~~~~~~~~w~~~ 1458 (1472)
+++|+ ++.+++. ...++|+.|++++||+.|+ |...|+.+|.+-
T Consensus 530 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~-c~~~~~~~w~~~ 574 (606)
T 3t6q_A 530 LASNH-ISIILPSLLPILSQQRTINLRQNPLDCT-CSNIYFLEWYKE 574 (606)
T ss_dssp CCSSC-CCCCCGGGHHHHHTSSEEECTTCCEECS-GGGHHHHHHHHH
T ss_pred CCCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCC-CCCHHHHHHHHH
T ss_conf 76894-1426876625677878896779986166-775789999973
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=310.28 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=48.5
Q ss_pred CCCEEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCEEE
Q ss_conf 6426883248897754101048998648996257985334888-889974469842799987781433116888855388
Q 000471 1007 RLQFLKLSKCEGLTRLPQALLTLSSLTEMRISGCASLVSFPQA-ALPSHLRTVKIEDCNALESLPEAWMHNSNSSLESLK 1085 (1472)
Q Consensus 1007 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 1085 (1472)
+|+.|++++|......+..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|......+..+.. +++|+.|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASN--FPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG--CTTCSEEE
T ss_pred CEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHC--CCCCCEEE
T ss_conf 5059994457658557777445667888956288-26777821416546888977168768676023301--57689888
Q ss_pred EECCCCCCCCCC--CCCCCCCCEEEEECCC
Q ss_conf 615999875799--9999995389982278
Q 000471 1086 IRNCNSLVSFPE--VALPSQLRTVKIEYCN 1113 (1472)
Q Consensus 1086 l~~~~~l~~~~~--~~~~~~L~~L~l~~~~ 1113 (1472)
+++|.....++. +..+++|+.|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 989974443462455066758988788996
Done!