Query 000473
Match_columns 1471
No_of_seqs 475 out of 4687
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 15:53:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000473.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_253-257//hhsearch_pdb/000473hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 374.6 64.7 556 14-764 14-577 (577)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 364.4 50.9 521 14-728 613-1136(1249)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 338.3 42.6 531 14-767 655-1207(1249)
4 2ymu_A WD-40 repeat protein; u 1.0 1 1 333.9 59.4 506 53-765 6-537 (577)
5 1nr0_A Actin interacting prote 1.0 1 1 328.8 59.3 577 5-765 5-609 (611)
6 1nr0_A Actin interacting prote 1.0 1 1 319.5 52.7 526 14-707 57-610 (611)
7 1pgu_A Actin interacting prote 1.0 1 1 315.2 54.9 551 6-766 6-613 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 307.1 56.6 586 15-767 16-732 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 301.9 53.0 501 15-709 62-615 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 288.6 56.0 602 15-772 57-788 (902)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=374.57 Aligned_cols=556 Identities=15% Similarity=0.170 Sum_probs=362.5
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99842999999089996999928996999985689998202249840555343576640333213575322222235666
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~ 93 (1471)
.++..|+|++|||||++||||+.||+|++||.. .+....+.||.++|++++
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~------~~~~~~l~gh~~~V~~l~----------------------- 64 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQTLTGHSSSVWGVA----------------------- 64 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT------SCEEEEEECCSSCEEEEE-----------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC------CCEEEEEECCCCCEEEEE-----------------------
T ss_conf 899857999998998999999389989999799------978999968989989999-----------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECC-E-ECCCCCCCCC--CCC-
Q ss_conf 4455469999899983799099999699918995508998788927997489996999913-0-0236876555--312-
Q 000473 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGC-C-FIDTNQLSDH--HSF- 168 (1471)
Q Consensus 94 ~~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~-~-~id~~~~~~~--h~~- 168 (1471)
|++++++|+|++.||+|+|||+ +++++.....+ ..+.....+++++.+++++. + .+..+..... ..+
T Consensus 65 ----fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~ 136 (577)
T 2ymu_A 65 ----FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136 (577)
T ss_dssp ----ECTTSSEEEEEETTSCEEEEET-TSCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEEC
T ss_pred ----ECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC---CCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECC
T ss_conf ----9899999999969897999989-99789999789---998899999899998999807983352023552001104
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf ---22346644445678889999725999958641799996327654688179999640678871169999388829999
Q 000473 169 ---ESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1471)
Q Consensus 169 ---~~i~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~s~~~i~~~~v~~~~~~~~~~~ilva~~dG~i~vW 245 (1471)
..+.......+............+.+|+......... .. ..+.+..+.+.+ +++ .++.++.+|.+++|
T Consensus 137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~---~~~--~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-TG---HSSSVWGVAFSP---DGQ--TIASASDDKTVKLW 207 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE-EC---CSSCEEEEEECT---TSS--CEEEEETTSEEEEE
T ss_pred CCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEEEEC-CC---CCCCEEEEEECC---CCC--EEEEECCCCEEEEE
T ss_conf 7777435554203776320025553100000000000002-68---776356654169---977--89998599989999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCEEEEEEECCEEEEE
Q ss_conf 97889876433478754578842000003774357319999219969999909849999768876200266421304741
Q 000473 246 PISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLE 325 (1471)
Q Consensus 246 ~l~~~~~~~~~~~~~l~~~e~~i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~~~~~l~d~~~~lge~~~~~~~lc~~ 325 (1471)
+..... + .....+...+..+++++++..+++...++. +++|+.... .+ ..+ .
T Consensus 208 ~~~~~~----------------~---~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~-i~~w~~~~~--~~----~~~--~ 259 (577)
T 2ymu_A 208 NRNGQL----------------L---QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRNGQ--LL----QTL--T 259 (577)
T ss_dssp CTTSCE----------------E---EEEECCSSCEEEEEECTTSSCEEEEETTSC-EEEECTTSC--EE----EEE--C
T ss_pred ECCCCE----------------E---EEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCC--EE----EEE--E
T ss_conf 499968----------------9---999468898899999799999999918998-999959997--99----998--0
Q ss_pred CCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEE
Q ss_conf 68998506655861100222101345523555412999918996999996147887765470330675689985024778
Q 000473 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHF 405 (1471)
Q Consensus 326 ~~~~~~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f 405 (1471)
.+ ...+.+.....+ ...++..+.++.+++|+... .. ... ..........+.|
T Consensus 260 ~~---~~~v~~v~~~~d---------------~~~l~~~~~d~~i~~w~~~~--~~-----~~~---~~~h~~~v~~~~~ 311 (577)
T 2ymu_A 260 GH---SSSVNGVAFRPD---------------GQTIASASDDKTVKLWNRNG--QL-----LQT---LTGHSSSVWGVAF 311 (577)
T ss_dssp CC---SSCEEEEEECTT---------------SSEEEEEETTSCEEEEETTS--CE-----EEE---ECCCSSCEEEEEE
T ss_pred CC---CCCEEEEEECCC---------------CCEEEEEECCCEEEEEECCC--CE-----EEE---EECCCCCEEEEEE
T ss_conf 68---898799999689---------------99999995999799994899--58-----999---7068897699999
Q ss_pred EECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 41230557732111034455654670689983336789996304852687057620366545688894122021132458
Q 000473 406 IQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQD 485 (1471)
Q Consensus 406 ~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~ 485 (1471)
.++++++..... +..+++|.+... ....+ .+....++.+.. .++|. .+.....++
T Consensus 312 ~~~~~~l~t~~~-----------d~~i~~w~~~~~------~~~~~-~~~~~~v~~~~~----s~~g~---~l~~~~~dg 366 (577)
T 2ymu_A 312 SPDGQTIASASD-----------DKTVKLWNRNGQ------HLQTL-TGHSSSVWGVAF----SPDGQ---TIASASDDK 366 (577)
T ss_dssp CTTSSEEEEEET-----------TSCEEEEETTSC------EEEEE-CCCSSCEEEEEE----CTTSS---EEEEEETTS
T ss_pred CCCCCEEEEEEC-----------CCEEEEEECCCC------EEEEE-ECCCCCEEEEEE----CCCCC---EEEEEECCC
T ss_conf 999999999969-----------995999969997------25787-478897799999----89999---999996999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 40023445788789863112225841899986315653599999999699199998045434799988433587616899
Q 000473 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1471)
Q Consensus 486 ~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~ 565 (1471)
.+++|+.. +++...+.+|...|+++.+.++.. .+++|+.|+.|++ |+ . +++....
T Consensus 367 ~v~~~~~~-----~~~~~~~~~~~~~v~~~~~s~dg~----~l~~~~~d~~v~~--~~-------------~-~~~~~~~ 421 (577)
T 2ymu_A 367 TVKLWNRN-----GQLLQTLTGHSSSVRGVAFSPDGQ----TIASASDDKTVKL--WN-------------R-NGQLLQT 421 (577)
T ss_dssp EEEEEETT-----CCEEEEEECCSSCEEEEEECTTSS----CEEEEETTSEEEE--EC-------------T-TCCEEEE
T ss_pred EEEEECCC-----CCEEEEECCCCCCEEEEEECCCCC----EEEEEECCCEEEE--EE-------------C-CCCEEEE
T ss_conf 89999089-----978998527889748999989999----9999949998999--96-------------9-9978989
Q ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 82588668999991278776567689799999789929999889994699980268878999988999999999999999
Q 000473 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1471)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~ 645 (1471)
+.+|...|++++|+|+ ++++++++.|++|++||. +++.+..+.+|..+|++++|+|+ +..++++
T Consensus 422 ~~~~~~~v~~~~~s~d---------~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd------~~~las~ 485 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPD---------DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------GQTIASA 485 (577)
T ss_dssp EECCSSCEEEEEECTT---------SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT------SCEEEEE
T ss_pred ECCCCCCEEEEEECCC---------CCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCC------CCEEEEE
T ss_conf 6288997579999899---------999999939998999979-99889997278997789999699------9999999
Q ss_pred ECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf 69992999988999288995179998199999499999999975899988999889999799990899982778881223
Q 000473 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1471)
Q Consensus 646 s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a~vi~~ 725 (1471)
+.|+.|++|+. ++++++.+.+|...|++++|+|++++|++++.| +.|++||. ++++++.+.||.+.+..+
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d--------g~v~lwd~-~~~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD--------KTVKLWNR-NGQLLQTLTGHSSSVWGV 555 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT--------SEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred ECCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECC--------CEEEEEEC-CCCEEEEECCCCCCEEEE
T ss_conf 19897999939-997899986799998999991899999999896--------99999969-997898971888887899
Q ss_pred EEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEEC
Q ss_conf 364064101343428707743433522101599668612
Q 000473 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 726 ~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~ 764 (1471)
.|.+. |.. +++...|++++.|+
T Consensus 556 ~fs~d------------g~~-----l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 556 AFSPD------------GQT-----IASASSDKTVKLWN 577 (577)
T ss_dssp EECTT------------SSC-----EEEEETTSCEEEEC
T ss_pred EECCC------------CCE-----EEEEECCCEEEEEC
T ss_conf 99689------------999-----99990899999969
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=364.43 Aligned_cols=521 Identities=15% Similarity=0.119 Sum_probs=275.4
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99842999999089996999928996999985689998202249840555343576640333213575322222235666
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~ 93 (1471)
++...|++++|+||+++|++|+.||.|++||+.+ ......+.+|..+|++++
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~h~~~v~~~~----------------------- 664 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-----GEKLLDIKAHEDEVLCCA----------------------- 664 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----CCEEEEECCCSSCEEEEE-----------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----CCEEEEECCCCCCEEEEE-----------------------
T ss_conf 6666489999879999899994889499999899-----978887606777789999-----------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCC--CCEEEEECCEECCCCCCCCCCCCCCC
Q ss_conf 4455469999899983799099999699918995508998788927997489--99699991300236876555312223
Q 000473 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS--NPRYVCIGCCFIDTNQLSDHHSFESV 171 (1471)
Q Consensus 94 ~~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~~l~~~~g~~~~i~~~s~--~~~ll~~G~~~id~~~~~~~h~~~~i 171 (1471)
+++++.+|++++.||++++||+.+|+++.....+ ..+.....+++ +..++++|..
T Consensus 665 ----~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~~---------------- 721 (1249)
T 3sfz_A 665 ----FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH---SEQVNCCHFTNKSNHLLLATGSN---------------- 721 (1249)
T ss_dssp ----ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSCCEEEEEET----------------
T ss_pred ----EECCCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCEEEEEEECCCCCEEEEEEEC----------------
T ss_conf ----9269998999818995999877999368999589---97379999840899659999808----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCC
Q ss_conf 46644445678889999725999958641799996327654688179999640678871169999388829999978898
Q 000473 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES 251 (1471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~s~~~i~~~~v~~~~~~~~~~~ilva~~dG~i~vW~l~~~~ 251 (1471)
++.|.+||..+...+.++.. + .+++.+++|.++ + ..+++++.||.|++|++....
T Consensus 722 -----------------d~~v~vwd~~~~~~~~~~~~-h--~~~v~~~~~sp~---~--~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 722 -----------------DFFLKLWDLNQKECRNTMFG-H--TNSVNHCRFSPD---D--ELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp -----------------TSCEEEEETTSSSEEEEECC-C--SSCEEEEEECSS---T--TEEEEEESSSEEEEEEGGGTE
T ss_pred -----------------CCEEEEEECCCCCHHHEECC-C--CCCEEEEEEECC---C--CEEEEEECCCEEEEEECCCCC
T ss_conf -----------------97099998999634220127-7--797889999259---9--989999789859999688886
Q ss_pred CCCCCCCCCCC-CCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCEEEEEEECCEEEEECCCCC
Q ss_conf 76433478754-57884200000377435731999921996999990984999976887620026642130474168998
Q 000473 252 HLDREEGNGLC-KSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTN 330 (1471)
Q Consensus 252 ~~~~~~~~~l~-~~e~~i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~~~~~l~d~~~~lge~~~~~~~lc~~~~~~~ 330 (1471)
........... ..+.. .......+..++++++|..++........+|....+..+..+ .... .
T Consensus 777 ~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~---------~~~~-~ 840 (1249)
T 3sfz_A 777 ERKSINVKRFFLSSEDP------PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI---------HTGH-H 840 (1249)
T ss_dssp EEEEEECCCCC--------------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE---------ECSS-S
T ss_pred CCCEECCCCCCCCCCCC------CCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEE---------CCCC-C
T ss_conf 55302023210246776------445650179999978998899975895999995689723577---------4787-7
Q ss_pred CEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCE
Q ss_conf 50665586110022210134552355541299991899699999614788776547033067568998502477841230
Q 000473 331 SYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSL 410 (1471)
Q Consensus 331 ~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~~~ 410 (1471)
.......|. .+ ...+++++.+|.+.+|++..... .. ...........+.|..++.
T Consensus 841 ~~v~~~~~s-p~---------------~~~l~~~~~dg~v~vwd~~~~~~------~~---~~~~h~~~v~~v~~spdg~ 895 (1249)
T 3sfz_A 841 STIQYCDFS-PY---------------DHLAVIALSQYCVELWNIDSRLK------VA---DCRGHLSWVHGVMFSPDGS 895 (1249)
T ss_dssp SCCCEEEEC-SS---------------TTEEEEECSSSCEEEEETTTTEE------EE---EECCCSSCEEEEEECTTSS
T ss_pred CCEEEEEEC-CC---------------CCEEEEEECCCEEEEEECCCCCE------EE---ECCCCCCCEEEEEECCCCC
T ss_conf 760799982-78---------------88899994798699998678956------53---2278766568999989999
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 55773211103445565467068998333678999630485268705762036654568889412202113245840023
Q 000473 411 YLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRS 490 (1471)
Q Consensus 411 ~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~W 490 (1471)
++++... +..+++|.+.......... .... ....+..+ +. .+...........|
T Consensus 896 ~l~s~s~-----------dg~v~vw~~~~~~~~~~~~---~~~~-~~~~~~~~--------~~---~~~~~~~~~~~~~~ 949 (1249)
T 3sfz_A 896 SFLTASD-----------DQTIRVWETKKVCKNSAIV---LKQE-IDVVFQEN--------ET---MVLAVDNIRGLQLI 949 (1249)
T ss_dssp EEEEEET-----------TSCEEEEEHHHHHSCCSSS---EEEE-EEEEEETT--------EE---EEEEEESSSSEEEE
T ss_pred EEEEEEC-----------CCEEEEEECCCCCEEEEEC---CCCE-EEEEECCC--------CC---EEEEECCCCCEEEE
T ss_conf 8999958-----------9728988746652010211---3310-36897599--------86---89981377624898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 44578878986311222584189998631565359999999969919999804543479998843358761689982588
Q 000473 491 EHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT 570 (1471)
Q Consensus 491 d~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~ 570 (1471)
...... . ...+...+++..+.++.. .+++|+.||.|.+|. ..++.....+.+|.
T Consensus 950 ~~~~~~----~---~~~~~~~i~~~~~sp~g~----~l~~g~~~g~i~i~d---------------~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 950 AGKTGQ----I---DYLPEAQVSCCCLSPHLE----YVAFGDEDGAIKIIE---------------LPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EESSCC----E---EEECCSCEEEEEECTTSS----EEEEEETTSCCEEEE---------------TTTTSCEEECCCCS
T ss_pred ECCCCE----E---EECCCCCEEEEEECCCCC----EEEEECCCCCEEEEE---------------CCCCCEEEECCCCC
T ss_conf 447650----8---972567278999958997----799986999889997---------------57872344303677
Q ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf 66899999127877656768979999978992999988999469998026887899998899999999999999969992
Q 000473 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1471)
Q Consensus 571 ~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~Dgs 650 (1471)
+.|++++|+|+ ++++++|+.|+.|++||+.+++.. .+..|...|.++.|+|+ ..+++++.|+.
T Consensus 1004 ~~v~~l~~s~d---------g~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~-------~~l~~~~~dg~ 1066 (1249)
T 3sfz_A 1004 KAVRHIQFTAD---------GKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-------SRLLSWSFDGT 1066 (1249)
T ss_dssp SCCCCEEECSS---------SSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSS-------SEEEEEESSSE
T ss_pred CCEEEEEECCC---------CCEEEEECCCCEEEEEECCCCCEE-EEECCCCCEEEEEECCC-------CCEEEEECCCC
T ss_conf 71689999899---------998999869987999987999668-98527873899999089-------95899978896
Q ss_pred EEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 999988999288995179998199999499999999975899988999889999799990899982778881223364
Q 000473 651 VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1471)
Q Consensus 651 V~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a~vi~~~~~ 728 (1471)
|++||+.+++++..+.+|...|.+++|+|++.++++++.| ++|++||+.++.++..+.+|...+..+.|+
T Consensus 1067 v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d--------~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD--------KTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp EEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS--------SCCCEECSSSSSCSBCCCCCSSCEEEEEEC
T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCC--------CCEEEEECCCCCEEEEECCCCCCEEEEEEC
T ss_conf 8998889886558874668848999998999989998499--------948998789850012550687767999997
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=338.27 Aligned_cols=531 Identities=13% Similarity=0.114 Sum_probs=358.1
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99842999999089996999928996999985689998202249840555343576640333213575322222235666
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1471)
Q Consensus 14 ~p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~ 93 (1471)
.+...|++++|+||+++|++|+.||+|++||+.+ .+....+.+|..+|++++
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~----------------------- 706 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-----GKLVHTYDEHSEQVNCCH----------------------- 706 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----CCEEEEEECCSSCEEEEE-----------------------
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-----CCEEEEECCCCCCEEEEE-----------------------
T ss_conf 6777789999926999899981899599987799-----936899958997379999-----------------------
Q ss_pred CCCCCCC--CCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCEECCCCCCCCCCCCCCC
Q ss_conf 4455469--99989998379909999969991899550899878892799748999699991300236876555312223
Q 000473 94 VMGKSSL--DNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171 (1471)
Q Consensus 94 ~~~~~s~--d~~~LvSas~DG~I~VWdv~sG~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i 171 (1471)
+++ +..++++++.||.+++||+.+++++.....+ ..+.....+++++.+++++..
T Consensus 707 ----~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h---~~~v~~~~~sp~~~~l~s~s~---------------- 763 (1249)
T 3sfz_A 707 ----FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH---TNSVNHCRFSPDDELLASCSA---------------- 763 (1249)
T ss_dssp ----ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC---SSCEEEEEECSSTTEEEEEES----------------
T ss_pred ----EECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCC---CCCEEEEEEECCCCEEEEEEC----------------
T ss_conf ----840899659999808970999989996342201277---797889999259998999978----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCC----------CCCCEEEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 4664444567888999972599995864179999632765----------468817999964067887116999938882
Q 000473 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNL----------SIGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~----------s~~~i~~~~v~~~~~~~~~~~ilva~~dG~ 241 (1471)
++.|.+||..+......+..... ....+.++++. ++++ .+++..+|.
T Consensus 764 -----------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~dg~---~l~~~~~~~ 820 (1249)
T 3sfz_A 764 -----------------DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS---ADGD---KIIVAAKNK 820 (1249)
T ss_dssp -----------------SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC---TTSS---EEEEEETTE
T ss_pred -----------------CCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEC---CCCC---EEEEECCCC
T ss_conf -----------------98599996888865530202321024677644565017999997---8998---899975895
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEE-EEEECCCCCCEEEEEEECC
Q ss_conf 999997889876433478754578842000003774357319999219969999909849-9997688762002664213
Q 000473 242 LQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEICFVDN 320 (1471)
Q Consensus 242 i~vW~l~~~~~~~~~~~~~l~~~e~~i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~~-~~~l~d~~~~lge~~~~~~ 320 (1471)
+.+|++...... . .....+...+..+++++++..+++.+.++. .+|.++.+..+..+
T Consensus 821 v~~~d~~~~~~~----~-------------~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~----- 878 (1249)
T 3sfz_A 821 VLLFDIHTSGLL----A-------------EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC----- 878 (1249)
T ss_dssp EEEEETTTCCEE----E-------------EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE-----
T ss_pred EEEEEECCCCCE----E-------------EECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEC-----
T ss_conf 999995689723----5-------------774787776079998278888999947986999986789565322-----
Q ss_pred EEEEECCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCE
Q ss_conf 04741689985066558611002221013455235554129999189969999961478877654703306756899850
Q 000473 321 LFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVK 400 (1471)
Q Consensus 321 ~lc~~~~~~~~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~ 400 (1471)
..+ ...+.+.....+ ...++..+.+|.+.+|++......... .... .
T Consensus 879 ----~~h---~~~v~~v~~spd---------------g~~l~s~s~dg~v~vw~~~~~~~~~~~-~~~~----------~ 925 (1249)
T 3sfz_A 879 ----RGH---LSWVHGVMFSPD---------------GSSFLTASDDQTIRVWETKKVCKNSAI-VLKQ----------E 925 (1249)
T ss_dssp ----CCC---SSCEEEEEECTT---------------SSEEEEEETTSCEEEEEHHHHHSCCSS-SEEE----------E
T ss_pred ----CCC---CCCEEEEEECCC---------------CCEEEEEECCCEEEEEECCCCCEEEEE-CCCC----------E
T ss_conf ----787---665689999899---------------998999958972898874665201021-1331----------0
Q ss_pred EEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 24778412305577321110344556546706899833367899963048526870576203665456888941220211
Q 000473 401 FSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDL 480 (1471)
Q Consensus 401 ~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~ 480 (1471)
....+......+..... ...+..+... .+.. .....+.....-+ .++|. .+..
T Consensus 926 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-----~~~~-~~~~~~~i~~~~~-------sp~g~---~l~~ 978 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDN-----------IRGLQLIAGK-----TGQI-DYLPEAQVSCCCL-------SPHLE---YVAF 978 (1249)
T ss_dssp EEEEEETTEEEEEEEES-----------SSSEEEEEES-----SCCE-EEECCSCEEEEEE-------CTTSS---EEEE
T ss_pred EEEEECCCCCEEEEECC-----------CCCEEEEECC-----CCEE-EECCCCCEEEEEE-------CCCCC---EEEE
T ss_conf 36897599868998137-----------7624898447-----6508-9725672789999-------58997---7999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 32458400234457887898631122258418999863156535999999996991999980454347999884335876
Q 000473 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1471)
Q Consensus 481 s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~ 560 (1471)
...++.+.+|+.... .....+.+|...|+++.+.++.. .+++|+.||.|++|.+. ++
T Consensus 979 g~~~g~i~i~d~~~~----~~~~~~~~h~~~v~~l~~s~dg~----~l~s~~~dg~i~vwd~~---------------~~ 1035 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNN----RVFSSGVGHKKAVRHIQFTADGK----TLISSSEDSVIQVWNWQ---------------TG 1035 (1249)
T ss_dssp EETTSCCEEEETTTT----SCEEECCCCSSCCCCEEECSSSS----CEEEECSSSBEEEEETT---------------TT
T ss_pred ECCCCCEEEEECCCC----CEEEECCCCCCCEEEEEECCCCC----EEEEECCCCEEEEEECC---------------CC
T ss_conf 869998899975787----23443036777168999989999----89998699879999879---------------99
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 16899825886689999912787765676897999997899299998899946999802688789999889999999999
Q 000473 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1471)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~ 640 (1471)
.. ..+.+|...|.++.++++ ..+++++.|++|++||+.++++...+.+|.+.|.++.|+|+ +.
T Consensus 1036 ~~-~~~~~~~~~v~~~~~~~~----------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d------~~ 1098 (1249)
T 3sfz_A 1036 DY-VFLQAHQETVKDFRLLQD----------SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD------AT 1098 (1249)
T ss_dssp EE-ECCBCCSSCEEEEEECSS----------SEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS------SS
T ss_pred CE-EEEECCCCCEEEEEECCC----------CCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCC------CC
T ss_conf 66-898527873899999089----------95899978896899888988655887466884899999899------99
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE-----
Q ss_conf 999996999299998899928899517999819999949999999997589998899988999979999089998-----
Q 000473 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL----- 715 (1471)
Q Consensus 641 ~l~S~s~DgsV~lwdl~t~~~i~~~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l----- 715 (1471)
.+++++.|++|++||+.+++++..+.+|...|++++|+|++.+|++++.| |.|++||+.++++++.+
T Consensus 1099 ~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d--------g~i~vwd~~~~~~~~~~~~~~~ 1170 (1249)
T 3sfz_A 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN--------GEIRIWNVSDGQLLHSCAPISV 1170 (1249)
T ss_dssp SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT--------SCCCEEESSSSCCCCCCCCCC-
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--------CEEEEEECCCCCEEEEECCCCC
T ss_conf 89998499948998789850012550687767999997999989998289--------9799998899945788514444
Q ss_pred ----ECCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECCCC
Q ss_conf ----2778881223364064101343428707743433522101599668612653
Q 000473 716 ----RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1471)
Q Consensus 716 ----~gH~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~l~~ 767 (1471)
.+|...+..+.|++. |.. +. +.+++++.|++..
T Consensus 1171 ~~~~~~~~~~v~~l~fs~d------------g~~------l~-s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1171 EEGTATHGGWVTDVCFSPD------------SKT------LV-SAGGYLKWWNVAT 1207 (1249)
T ss_dssp ------CCSCCCEEEECTT------------SSC------EE-EESSSEEEBCSSS
T ss_pred CCCCCCCCCEEEEEEECCC------------CCE------EE-ECCCEEEEEECCC
T ss_conf 4210256742899999789------------998------99-7798599989888
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=333.88 Aligned_cols=506 Identities=15% Similarity=0.151 Sum_probs=295.8
Q ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCC
Q ss_conf 02249840555343576640333213575322222235666445546999989998379909999969991899550899
Q 000473 53 IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPP 132 (1471)
Q Consensus 53 ~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~~l~~ 132 (1471)
++.++.|.||+++|+|++ +++|+++|+|++.|++++|||. +++++...+-+
T Consensus 6 ~~e~~~L~GH~~~V~~~a---------------------------~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh- 56 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVA---------------------------FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH- 56 (577)
T ss_dssp CCEEEEECCCSSCEEEEE---------------------------ECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-
T ss_pred CEEEEEECCCCCCEEEEE---------------------------ECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC-
T ss_conf 389439878998579999---------------------------9899899999938998999979-99789999689-
Q ss_pred CCCCCCEEEECCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCC
Q ss_conf 87889279974899969999130023687655531222346644445678889999725999958641799996327654
Q 000473 133 WVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS 212 (1471)
Q Consensus 133 ~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~s 212 (1471)
..+.....+++++++++++.. ++.|.+||. +.+.+.++.. .
T Consensus 57 --~~~V~~l~fspdg~~las~~~---------------------------------d~~i~vWd~-~~~~~~~~~~-~-- 97 (577)
T 2ymu_A 57 --SSSVWGVAFSPDGQTIASASD---------------------------------DKTVKLWNR-NGQLLQTLTG-H-- 97 (577)
T ss_dssp --SSCEEEEEECTTSSEEEEEET---------------------------------TSCEEEEET-TSCEEEEECC-C--
T ss_pred --CCCEEEEEECCCCCEEEEEEC---------------------------------CCEEEEEEC-CCCEEEEEEC-C--
T ss_conf --899899999899999999969---------------------------------897999989-9978999978-9--
Q ss_pred CCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCCC-CCC-----------------------CCCCC-CC
Q ss_conf 688179999640678871169999388829999978898764334-787-----------------------54578-84
Q 000473 213 IGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREE-GNG-----------------------LCKSS-SQ 267 (1471)
Q Consensus 213 ~~~i~~~~v~~~~~~~~~~~ilva~~dG~i~vW~l~~~~~~~~~~-~~~-----------------------l~~~e-~~ 267 (1471)
.+++.+++|.+ ++ ..++.++.++.+++|+........... ... +.... ..
T Consensus 98 ~~~v~~~~~s~---d~--~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (577)
T 2ymu_A 98 SSSVRGVAFSP---DG--QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 172 (577)
T ss_dssp SSCEEEEEECT---TS--SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCE
T ss_pred CCCEEEEEECC---CC--CEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEE
T ss_conf 99889999989---99--98999807983352023552001104777743555420377632002555310000000000
Q ss_pred CCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCC-CEEEEEEECCEEEEECCCCCCEEEEEEEECCHHHHH
Q ss_conf 2000003774357319999219969999909849999768876-200266421304741689985066558611002221
Q 000473 268 LDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEK 346 (1471)
Q Consensus 268 i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~~~~~l~d~~~-~lge~~~~~~~lc~~~~~~~~~~vgg~~~~~~~~~~ 346 (1471)
. .....+...+..+.+++++..+++.+.++. +++|+... .+..+ ..+. ..+.+.....+
T Consensus 173 ~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~~w~~~~~~~~~~---------~~~~---~~v~~~~~s~d---- 232 (577)
T 2ymu_A 173 L---QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWNRNGQLLQTL---------TGHS---SSVRGVAFSPD---- 232 (577)
T ss_dssp E---EEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECTTSCEEEEE---------ECCS---SCEEEEEECTT----
T ss_pred E---EECCCCCCCEEEEEECCCCCEEEEECCCCE-EEEEECCCCEEEEE---------ECCC---CCEEEEEECCC----
T ss_conf 0---002687763566541699778999859998-99994999689999---------4688---98899999799----
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCC
Q ss_conf 01345523555412999918996999996147887765470330675689985024778412305577321110344556
Q 000473 347 IENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETS 426 (1471)
Q Consensus 347 ~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~ 426 (1471)
...++.++.+|.+.+|+... . . +.. ..........+.|.++++.++....
T Consensus 233 -----------g~~l~~~~~d~~i~~w~~~~--~---~--~~~---~~~~~~~v~~v~~~~d~~~l~~~~~--------- 282 (577)
T 2ymu_A 233 -----------GQTIASASDDKTVKLWNRNG--Q---L--LQT---LTGHSSSVNGVAFRPDGQTIASASD--------- 282 (577)
T ss_dssp -----------SSCEEEEETTSCEEEECTTS--C---E--EEE---ECCCSSCEEEEEECTTSSEEEEEET---------
T ss_pred -----------CCEEEEEECCCEEEEEECCC--C---E--EEE---EECCCCCEEEEEECCCCCEEEEEEC---------
T ss_conf -----------99999991899899995999--7---9--999---8068898799999689999999959---------
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54670689983336789996304852687057620366545688894122021132458400234457887898631122
Q 000473 427 QWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFV 506 (1471)
Q Consensus 427 ~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~ 506 (1471)
+..+++|.... ...+.+ .+....++.+.. .+++. .+.+...++.+++|+... .....+.
T Consensus 283 --d~~i~~w~~~~------~~~~~~-~~h~~~v~~~~~----~~~~~---~l~t~~~d~~i~~w~~~~-----~~~~~~~ 341 (577)
T 2ymu_A 283 --DKTVKLWNRNG------QLLQTL-TGHSSSVWGVAF----SPDGQ---TIASASDDKTVKLWNRNG-----QHLQTLT 341 (577)
T ss_dssp --TSCEEEEETTS------CEEEEE-CCCSSCEEEEEE----CTTSS---EEEEEETTSCEEEEETTS-----CEEEEEC
T ss_pred --CCEEEEEECCC------CEEEEE-ECCCCCEEEEEE----CCCCC---EEEEEECCCEEEEEECCC-----CEEEEEE
T ss_conf --99799994899------589997-068897699999----99999---999996999599996999-----7257874
Q ss_pred CCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf 25841899986315653599999999699199998045434799988433587616899825886689999912787765
Q 000473 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1471)
Q Consensus 507 ~h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1471)
+|...++++.+.++.. .+++|+.||.+++|.. +++....+.+|...|++++|+|+
T Consensus 342 ~~~~~v~~~~~s~~g~----~l~~~~~dg~v~~~~~----------------~~~~~~~~~~~~~~v~~~~~s~d----- 396 (577)
T 2ymu_A 342 GHSSSVWGVAFSPDGQ----TIASASDDKTVKLWNR----------------NGQLLQTLTGHSSSVRGVAFSPD----- 396 (577)
T ss_dssp CCSSCEEEEEECTTSS----EEEEEETTSEEEEEET----------------TCCEEEEEECCSSCEEEEEECTT-----
T ss_pred CCCCCEEEEEECCCCC----EEEEEECCCEEEEECC----------------CCCEEEEECCCCCCEEEEEECCC-----
T ss_conf 7889779999989999----9999969998999908----------------99789985278897489999899-----
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf 67689799999789929999889994699980268878999988999999999999999699929999889992889951
Q 000473 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1471)
Q Consensus 587 ~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~ 666 (1471)
+++|++|+.|+.|++||. +++++..+.+|...|++++|+|+ ++.+++++.|+.|++|+.. ++.+..+.
T Consensus 397 ----g~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------~~~l~~~~~d~~v~~w~~~-~~~~~~~~ 464 (577)
T 2ymu_A 397 ----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------DQTIASASDDKTVKLWNRN-GQLLQTLT 464 (577)
T ss_dssp ----SSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------SSEEEEEETTSEEEEEETT-SCEEEEEE
T ss_pred ----CCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCC------CCEEEEECCCCEEEEEECC-CCEEEEEC
T ss_conf ----999999949998999969-99789896288997579999899------9999999399989999799-98899972
Q ss_pred CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCC
Q ss_conf 79998199999499999999975899988999889999799990899982778881223364064101343428707743
Q 000473 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTS 746 (1471)
Q Consensus 667 gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a~vi~~~~~~~~~~~~~sg~v~~g~~~ 746 (1471)
+|...|.+++|+|++.+|++++.| +.|++||. ++++++.+.+|...+..+.|.+. |..
T Consensus 465 ~~~~~v~~~~~spd~~~las~~~d--------~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d------------g~~- 522 (577)
T 2ymu_A 465 GHSSSVRGVAFSPDGQTIASASDD--------KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------------GQT- 522 (577)
T ss_dssp CCSSCEEEEEECTTSCEEEEEETT--------SEEEEEET-TSCEEEEEECCSSCEEEEEECTT------------SSC-
T ss_pred CCCCCEEEEEECCCCCEEEEEECC--------CEEEEECC-CCCEEEEEECCCCCEEEEEECCC------------CCE-
T ss_conf 789977899996999999999198--------97999939-99789998679999899999189------------999-
Q ss_pred CCCCCEEECCCCCEEEECC
Q ss_conf 4335221015996686126
Q 000473 747 VSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 747 ~s~~l~~~~~D~~~r~w~l 765 (1471)
++....|++++.|+.
T Consensus 523 ----l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 523 ----IASASDDKTVKLWNR 537 (577)
T ss_dssp ----EEEEETTSEEEEECT
T ss_pred ----EEEEECCCEEEEEEC
T ss_conf ----999989699999969
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=328.75 Aligned_cols=577 Identities=10% Similarity=0.056 Sum_probs=342.6
Q ss_pred EEEEECCCCCCC--CEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 245850899998--429999990899969999289969999856899982022498405553435766403332135753
Q 000473 5 SVACIWSGTPPS--HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGK 82 (1471)
Q Consensus 5 ~~~~lw~~~~p~--h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~ 82 (1471)
+...+|.+.|.. +.+.+++|+|||++|++++ ++.|++|++.. ......+.||..+|++++
T Consensus 5 ~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~-----~~~~~~~~~h~~~v~~~~------------ 66 (611)
T 1nr0_A 5 SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS-----LTDTEIYTEHSHQTTVAK------------ 66 (611)
T ss_dssp EEEEEECCCCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC-----SSCCEEECCCSSCEEEEE------------
T ss_pred CCCCEECCCCCCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCC-----CCCCEEECCCCCCEEEEE------------
T ss_conf 116279899974068236976679999799679-99799945787-----242737658998659999------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEE--EEEEECCCCCCCCCEEEECCCCCEEEE-ECCE----
Q ss_conf 222222356664455469999899983799099999699918--995508998788927997489996999-9130----
Q 000473 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHC--RRRRKLPPWVGSPSVICTLPSNPRYVC-IGCC---- 155 (1471)
Q Consensus 83 ~~~~~~~~~~~~~~~~s~d~~~LvSas~DG~I~VWdv~sG~c--i~~~~l~~~~g~~~~i~~~s~~~~ll~-~G~~---- 155 (1471)
|+|++.+|+|++.||+++|||+.++.+ ......+ ..+.....+++++++++ ++..
T Consensus 67 ---------------~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 67 ---------------TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp ---------------ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ---------------ECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCC---CCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf ---------------999996899994899789948989841566762255---78448999899999799998997736
Q ss_pred -ECCCCCCCCCCCCCCCCCCC-------CCCCCC-CCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECC
Q ss_conf -02368765553122234664-------444567-888999972599995864179999632765468817999964067
Q 000473 156 -FIDTNQLSDHHSFESVEGDL-------VSEDKE-VPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGE 226 (1471)
Q Consensus 156 -~id~~~~~~~h~~~~i~~~~-------~~~~~~-~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~s~~~i~~~~v~~~~~ 226 (1471)
.+..|.. ......+.++. ...+.. .......++.+.+||..+.+.+.++.. +.+++.+++|.+
T Consensus 129 ~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---H~~~V~~v~fsp--- 200 (611)
T 1nr0_A 129 GHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---HTKFVHSVRYNP--- 200 (611)
T ss_dssp EEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---CSSCEEEEEECT---
T ss_pred EEEEEEEC--CCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECC---CCCCEEEEEECC---
T ss_conf 69999638--9976325478898369998899982999992898099997999757665200---257169999979---
Q ss_pred CCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEEEEC
Q ss_conf 88711699993888299999788987643347875457884200000377435731999921996999990984999976
Q 000473 227 DMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLL 306 (1471)
Q Consensus 227 ~~~~~~ilva~~dG~i~vW~l~~~~~~~~~~~~~l~~~e~~i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~~~~~l~ 306 (1471)
+++ .++.++.||+|++|++..++... .+.... + ...+|...+..+++++++..+++++.++. +++|
T Consensus 201 dg~--~las~s~D~~i~lwd~~~g~~~~-----~~~~~~--~----~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lW 266 (611)
T 1nr0_A 201 DGS--LFASTGGDGTIVLYNGVDGTKTG-----VFEDDS--L----KNVAHSGSVFGLTWSPDGTKIASASADKT-IKIW 266 (611)
T ss_dssp TSS--EEEEEETTSCEEEEETTTCCEEE-----ECBCTT--S----SSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEE
T ss_pred CCC--EEEEEECCCCEEEEECCCCCEEE-----EECCCC--C----CCCCCCCCEEEEEECCCCCEEEEEECCCE-EEEE
T ss_conf 999--89999899919998899982866-----513664--3----23566787899999799999999908980-9999
Q ss_pred CC--CCCEEEEEEECCEEEEECCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 88--7620026642130474168998506655861100222101345523555412999918996999996147887765
Q 000473 307 GS--GSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDY 384 (1471)
Q Consensus 307 d~--~~~lge~~~~~~~lc~~~~~~~~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~~ 384 (1471)
+. +..+..+.. .........+..+. ...++..+.+|.+.+|+.....
T Consensus 267 d~~~~~~~~~~~~--------~~~~~~~~~~~~~~------------------~~~l~s~s~d~~i~~~~~~~~~----- 315 (611)
T 1nr0_A 267 NVATLKVEKTIPV--------GTRIEDQQLGIIWT------------------KQALVSISANGFINFVNPELGS----- 315 (611)
T ss_dssp ETTTTEEEEEEEC--------CSSGGGCEEEEEEC------------------SSCEEEEETTCCEEEEETTTTE-----
T ss_pred ECCCCCEEEEECC--------CCCCCCEEEEEEEC------------------CCEEEEEECCCCEEEEECCCCC-----
T ss_conf 6888701344047--------88766406899973------------------8879999589968999688997-----
Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCC
Q ss_conf 47033067568998502477841230557732111034455654670689983336789996304852687057620366
Q 000473 385 EPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNS 464 (1471)
Q Consensus 385 ~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~ 464 (1471)
... ...........+.|.++++++++... +..+++|.+.... ....+..+....+..+..
T Consensus 316 --~~~--~~~gh~~~v~~l~~spdg~~l~s~s~-----------D~~v~~Wd~~~~~-----~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 316 --IDQ--VRYGHNKAITALSSSADGKTLFSADA-----------EGHINSWDISTGI-----SNRVFPDVHATMITGIKT 375 (611)
T ss_dssp --EEE--EECCCSSCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTCC-----EEECSSCSCSSCEEEEEE
T ss_pred --CCE--EECCCCCCEEEEEEECCCCEEEEEEC-----------CCCEEEEECCCCC-----EEEECCCCCCCEEEEEEE
T ss_conf --446--98378888899999189998999958-----------9849999788792-----563216677650789998
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf 54568889412202113245840023445788789863112225841899986315653599999999699199998045
Q 000473 465 TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL 544 (1471)
Q Consensus 465 ~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~ 544 (1471)
..++ .+.....++.+++|+............ .........+..+.++.. .++.+ .++.+.+| +
T Consensus 376 ----s~~~----~l~s~s~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~----~~~~~-~~~~v~~~--~- 438 (611)
T 1nr0_A 376 ----TSKG----DLFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGD----IAVAA-CYKHIAIY--S- 438 (611)
T ss_dssp ----CTTS----CEEEEETTTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECTTSS----CEEEE-ESSEEEEE--E-
T ss_pred ----CCCC----CEEEEECCCCEEEEECCCCCCCCCCEE-EEECCCCCCEEEEECCCC----EEEEE-ECCEEEEE--E-
T ss_conf ----7899----699998489668954688543565212-001489970799807996----99999-67639998--4-
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCCC
Q ss_conf 434799988433587616899825886689999912787765676897999997899299998899946--999802688
Q 000473 545 FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHVA 622 (1471)
Q Consensus 545 l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~--l~~l~~H~~ 622 (1471)
.+. ...+ .|...+.+++|+|+ ++++++|+.|++|++||+..+.. ... .+|..
T Consensus 439 --------------~~~-~~~~-~~~~~v~~va~spd---------g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~ 492 (611)
T 1nr0_A 439 --------------HGK-LTEV-PISYNSSCVALSND---------KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPA 492 (611)
T ss_dssp --------------TTE-EEEE-ECSSCEEEEEECTT---------SCEEEEEETTSEEEEEEEETTEEEEEEE-EECSS
T ss_pred --------------CCC-EEEE-ECCCCCEEEEEECC---------CCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCC
T ss_conf --------------894-3464-06889549999289---------9899996899739999945992224101-57788
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCC-CCEEEE--ECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 789999889999999999999996999299998899-928899--51799981999994999999999758999889998
Q 000473 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERM--FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1471)
Q Consensus 623 ~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t-~~~i~~--~~gh~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg 699 (1471)
.|++++|+|+ ++.+++++.|++|++|++.+ ++++.. +.+|...|.+++|+|++++|++++.| +
T Consensus 493 ~v~~v~fspd------g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D--------~ 558 (611)
T 1nr0_A 493 EITSVAFSNN------GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD--------N 558 (611)
T ss_dssp CEEEEEECTT------SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT--------S
T ss_pred CEEEEEECCC------CCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECC--------C
T ss_conf 6079999899------9989999489989998857787223210264046642589989989979999799--------7
Q ss_pred EEEEEECCCCE-EE-EEEECC-CCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 89999799990-89-998277-88812233640641013434287077434335221015996686126
Q 000473 700 VLFIWDVKTGA-RE-RVLRGT-ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1471)
Q Consensus 700 ~I~IWDi~tg~-li-~~l~gH-~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~l 765 (1471)
+|++||+.++. .. ..+.+| ...+..+.|.+. + .++....|+++|.|++
T Consensus 559 ~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d------------~------~l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE------------T------TIVSAGQDSNIKFWNV 609 (611)
T ss_dssp CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET------------T------EEEEEETTSCEEEEEC
T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCC------------C------EEEEECCCCCEEEEEC
T ss_conf 2999978875556326444676567118998589------------9------7999528877899844
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=319.48 Aligned_cols=526 Identities=12% Similarity=0.078 Sum_probs=322.8
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCC---CCCCC-----CCCCC
Q ss_conf 99842999999089996999928996999985689998202249840555343576640333---21357-----53222
Q 000473 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPA---MVSRD-----GKAEH 85 (1471)
Q Consensus 14 ~p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~---~~~~~-----g~~~~ 85 (1471)
.+.+.|++++|+|||++||+|+.||+|++||+.. .+......+.+|.++|.+++|.+-. +..++ |....
T Consensus 57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~---~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ---TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS---TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC---CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 8998659999999996899994899789948989---8415667622557844899989999979999899773669999
Q ss_pred CCCC--------CCCCCCC-CCCCCCC-EEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCE
Q ss_conf 2223--------5666445-5469999-8999837990999996999189955089987889279974899969999130
Q 000473 86 WKAE--------NSSNVMG-KSSLDNG-ALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCC 155 (1471)
Q Consensus 86 ~~~~--------~~~~~~~-~~s~d~~-~LvSas~DG~I~VWdv~sG~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~ 155 (1471)
|... +...+.. .|+++++ +|+|++.|+++++||...++++....-+ ........+++++.+++++..
T Consensus 134 wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H---~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 134 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH---TKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC---SSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCC---CCCEEEEEECCCCCEEEEEEC
T ss_conf 63899763254788983699988999829999928980999979997576652002---571699999799998999989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCC----CCCCCEEEEEEEEECCCCCCE
Q ss_conf 0236876555312223466444456788899997259999586417999963276----546881799996406788711
Q 000473 156 FIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGN----LSIGPWKFMDVVSLGEDMGKH 231 (1471)
Q Consensus 156 ~id~~~~~~~h~~~~i~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~----~s~~~i~~~~v~~~~~~~~~~ 231 (1471)
++.|.+||..+.+.+..+.... -+.+++..++|++ +++
T Consensus 211 ---------------------------------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~-- 252 (611)
T 1nr0_A 211 ---------------------------------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP---DGT-- 252 (611)
T ss_dssp ---------------------------------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT---TSS--
T ss_pred ---------------------------------CCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC---CCC--
T ss_conf ---------------------------------991999889998286651366432356678789999979---999--
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCC
Q ss_conf 69999388829999978898764334787545788420000037743573199992199699999098499997688762
Q 000473 232 YGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGST 311 (1471)
Q Consensus 232 ~ilva~~dG~i~vW~l~~~~~~~~~~~~~l~~~e~~i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~~~~~l~d~~~~ 311 (1471)
.++.++.|++|++|++...+.... + .....+. ...+.+..++..++....++. +++|+...
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~------------~---~~~~~~~--~~~~~~~~~~~~l~s~s~d~~-i~~~~~~~- 313 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKT------------I---PVGTRIE--DQQLGIIWTKQALVSISANGF-INFVNPEL- 313 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEE------------E---ECCSSGG--GCEEEEEECSSCEEEEETTCC-EEEEETTT-
T ss_pred EEEEEECCCEEEEEECCCCCEEEE------------E---CCCCCCC--CEEEEEEECCCEEEEEECCCC-EEEEECCC-
T ss_conf 999990898099996888701344------------0---4788766--406899973887999958996-89996889-
Q ss_pred EEEEEEECCEEEEECCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEC
Q ss_conf 00266421304741689985066558611002221013455235554129999189969999961478877654703306
Q 000473 312 IGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIP 391 (1471)
Q Consensus 312 lge~~~~~~~lc~~~~~~~~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip 391 (1471)
++.. ..+ ..+. ..+.......+ ...++..+.+|.+++|++...... . ..+
T Consensus 314 -~~~~---~~~--~gh~---~~v~~l~~spd---------------g~~l~s~s~D~~v~~Wd~~~~~~~----~--~~~ 363 (611)
T 1nr0_A 314 -GSID---QVR--YGHN---KAITALSSSAD---------------GKTLFSADAEGHINSWDISTGISN----R--VFP 363 (611)
T ss_dssp -TEEE---EEE--CCCS---SCEEEEEECTT---------------SSEEEEEETTSCEEEEETTTCCEE----E--CSS
T ss_pred -CCCC---EEE--CCCC---CCEEEEEEECC---------------CCEEEEEECCCCEEEEECCCCCEE----E--ECC
T ss_conf -9744---698--3788---88899999189---------------998999958984999978879256----3--216
Q ss_pred CCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 75689985024778412305577321110344556546706899833367899963048526870576203665456888
Q 000473 392 AVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENE 471 (1471)
Q Consensus 392 ~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l~~g~~~~~w~~~~~~~~~~d 471 (1471)
.........+.|...+ .++... ++..+++|..................+.....-+ .++
T Consensus 364 --~~h~~~v~~~~~s~~~-~l~s~s-----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-------s~d 422 (611)
T 1nr0_A 364 --DVHATMITGIKTTSKG-DLFTVS-----------WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV-------SAD 422 (611)
T ss_dssp --CSCSSCEEEEEECTTS-CEEEEE-----------TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE-------CTT
T ss_pred --CCCCCEEEEEEECCCC-CEEEEE-----------CCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEE-------ECC
T ss_conf --6776507899987899-699998-----------4896689546885435652120014899707998-------079
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 94122021132458400234457887898631122258418999863156535999999996991999980454347999
Q 000473 472 GSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP 551 (1471)
Q Consensus 472 G~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~~d~~ 551 (1471)
| ..........+++|+.. + ...+ .|...++++.+.++.. .+++|+.||.|++|+...
T Consensus 423 g----~~~~~~~~~~v~~~~~~------~-~~~~-~~~~~v~~va~spdg~----~lasgs~D~~v~lwd~~~------- 479 (611)
T 1nr0_A 423 G----DIAVAACYKHIAIYSHG------K-LTEV-PISYNSSCVALSNDKQ----FVAVGGQDSKVHVYKLSG------- 479 (611)
T ss_dssp S----SCEEEEESSEEEEEETT------E-EEEE-ECSSCEEEEEECTTSC----EEEEEETTSEEEEEEEET-------
T ss_pred C----CEEEEEECCEEEEEECC------C-EEEE-ECCCCCEEEEEECCCC----EEEEECCCCEEEEEECCC-------
T ss_conf 9----69999967639998489------4-3464-0688954999928998----999968997399999459-------
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCC-CCEEEE--EECCCCCEEEEE
Q ss_conf 88433587616899825886689999912787765676897999997899299998899-946999--802688789999
Q 000473 552 GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITV--MHHHVAPVRQII 628 (1471)
Q Consensus 552 ~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~t-g~~l~~--l~~H~~~V~si~ 628 (1471)
........ .+|.+.|++++|+|+ +++|++++.|++|++|++.+ +++... +..|.+.|.+++
T Consensus 480 ------~~~~~~~~-~~h~~~v~~v~fspd---------g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 480 ------ASVSEVKT-IVHPAEITSVAFSNN---------GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 543 (611)
T ss_dssp ------TEEEEEEE-EECSSCEEEEEECTT---------SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred ------CCEEEEEC-CCCCCCEEEEEECCC---------CCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEE
T ss_conf ------92224101-577886079999899---------99899994899899988577872232102640466425899
Q ss_pred ECCCCCCCCCCCEEEEEECCCCEEEEECCCCC-EE-EEECCC-CCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 88999999999999999699929999889992-88-995179-9981999994999999999758999889998899997
Q 000473 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VE-RMFPGH-PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1471)
Q Consensus 629 ~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~-~i-~~~~gh-~~~V~~V~wspdg~~Lvtgs~D~s~~~D~dg~I~IWD 705 (1471)
|+|+ ++.+++++.|++|++|+++++. +. ..+.+| ...|.+++|+|++. |++++.| ++|++|+
T Consensus 544 fspd------g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D--------~~i~lW~ 608 (611)
T 1nr0_A 544 WSPD------NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQD--------SNIKFWN 608 (611)
T ss_dssp ECTT------SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETT--------SCEEEEE
T ss_pred ECCC------CCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCC--------CCEEEEE
T ss_conf 8998------99799997997299997887555632644467656711899858997-9995288--------7789984
Q ss_pred CC
Q ss_conf 99
Q 000473 706 VK 707 (1471)
Q Consensus 706 i~ 707 (1471)
+.
T Consensus 609 ~~ 610 (611)
T 1nr0_A 609 VP 610 (611)
T ss_dssp CC
T ss_pred CC
T ss_conf 44
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=315.22 Aligned_cols=551 Identities=12% Similarity=0.053 Sum_probs=341.1
Q ss_pred EEEECCCC--CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCC--CEEEEEEECCCCCC-EEEEEECCCCCCCCC
Q ss_conf 45850899--99842999999089996999928996999985689998--20224984055534-357664033321357
Q 000473 6 VACIWSGT--PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYS--EIKPVAMLCGHSAP-IADLSICYPAMVSRD 80 (1471)
Q Consensus 6 ~~~lw~~~--~p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~--~~~~~~~L~GH~a~-Vt~La~c~~~~~~~~ 80 (1471)
-.-.|.+. ++...|++++|+||+++|++++ |+.|.+|++.+ + ..+....+.+|..+ |++++
T Consensus 6 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~---~~~~~~~~~~~~~h~~~~v~~~~---------- 71 (615)
T 1pgu_A 6 LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDD---GDSKVPPVVQFTGHGSSVVTTVK---------- 71 (615)
T ss_dssp EEEEECCCCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCS---SCCSSCSEEEECTTTTSCEEEEE----------
T ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCC---CCCCCCCCEEEECCCCCEEEEEE----------
T ss_conf 52315999877658536899889999799935-98499997778---87765143188057884499999----------
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCC--------EEEEEEECCCCCCCCCEEEECCCCCEEE
Q ss_conf 53222222356664455469--9998999837990999996999--------1899550899878892799748999699
Q 000473 81 GKAEHWKAENSSNVMGKSSL--DNGALISACTDGVLCVWSRSSG--------HCRRRRKLPPWVGSPSVICTLPSNPRYV 150 (1471)
Q Consensus 81 g~~~~~~~~~~~~~~~~~s~--d~~~LvSas~DG~I~VWdv~sG--------~ci~~~~l~~~~g~~~~i~~~s~~~~ll 150 (1471)
+++ ++.+|++++.||++++||+.++ +++.....+ ..+.....++++++++
T Consensus 72 -----------------~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 131 (615)
T 1pgu_A 72 -----------------FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL---AGPISDISWDFEGRRL 131 (615)
T ss_dssp -----------------ECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC---SSCEEEEEECTTSSEE
T ss_pred -----------------ECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCC---CCCEEEEEEECCCCEE
T ss_conf -----------------79678998899964898799976888765544554200011125---6637999990799989
Q ss_pred EECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 99130023687655531222346644445678889999725999958641799996327654688179999640678871
Q 000473 151 CIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGK 230 (1471)
Q Consensus 151 ~~G~~~id~~~~~~~h~~~~i~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~s~~~i~~~~v~~~~~~~~~ 230 (1471)
+++..-.+ ..+.+.+||. .+.+..+.. +.+.+.++.|.+ ++.
T Consensus 132 ~~~~~~~~-----------------------------~~~~v~~~d~--~~~~~~~~~---~~~~v~~~~~~~---~~~- 173 (615)
T 1pgu_A 132 CVVGEGRD-----------------------------NFGVFISWDS--GNSLGEVSG---HSQRINACHLKQ---SRP- 173 (615)
T ss_dssp EEEECCSS-----------------------------CSEEEEETTT--CCEEEECCS---CSSCEEEEEECS---SSS-
T ss_pred EEECCCCC-----------------------------CCCEEEEEEC--CCCCEEEEC---CCCCEEEEEECC---CCC-
T ss_conf 99316877-----------------------------7557999978--981031306---774388999887---899-
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC---CCEEEEEECC-CCEEEEEECCEE-EEEE
Q ss_conf 1699993888299999788987643347875457884200000377435---7319999219-969999909849-9997
Q 000473 231 HYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVE---GGHLVSVATC-GNIIALVLKDHC-IFRL 305 (1471)
Q Consensus 231 ~~ilva~~dG~i~vW~l~~~~~~~~~~~~~l~~~e~~i~~~~~~~~~~~---~~~~is~s~~-g~~i~~~~~~~~-~~~l 305 (1471)
..++.++.+|.+++|++...+. + .....+.. .+..++++++ +..+++++.++. .+|.
T Consensus 174 ~~l~~~~~d~~v~vwd~~~~~~---------------~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 174 MRSMTVGDDGSVVFYQGPPFKF---------------S---ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CEEEEEETTTEEEEEETTTBEE---------------E---EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred CEEEEEECCCCEEEEECCCCCE---------------E---EEECCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEE
T ss_conf 6899995799599996999610---------------1---320256777742899997897788899986898089998
Q ss_pred CCCCCCEEEEEEECCEEEEECC--CCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf 6887620026642130474168--99850665586110022210134552355541299991899699999614788776
Q 000473 306 LGSGSTIGEICFVDNLFCLEGG--STNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFD 383 (1471)
Q Consensus 306 ~d~~~~lge~~~~~~~lc~~~~--~~~~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~ 383 (1471)
+..+..+..+ ... ..........|. + ...++..+.+|.+.+|++....
T Consensus 236 ~~~~~~~~~~---------~~~~~~~~~~v~~~~~~--~---------------~~~l~~~~~d~~i~~wd~~~~~---- 285 (615)
T 1pgu_A 236 GKSGEFLKYI---------EDDQEPVQGGIFALSWL--D---------------SQKFATVGADATIRVWDVTTSK---- 285 (615)
T ss_dssp TTTCCEEEEC---------CBTTBCCCSCEEEEEES--S---------------SSEEEEEETTSEEEEEETTTTE----
T ss_pred CCCCCEEEEE---------CCCCCCCCCCEEEEEEC--C---------------CCEEEEECCCCCEEEEECCCCC----
T ss_conf 9999785895---------25444567755899981--8---------------9979998489948999788892----
Q ss_pred CCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEE-CCCCCE-EEEC
Q ss_conf 54703306756899850247784123055773211103445565467068998333678999630485-268705-7620
Q 000473 384 YEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMV-GEGFSF-VDWV 461 (1471)
Q Consensus 384 ~~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~~~~~~k~l-~~g~~~-~~w~ 461 (1471)
.......+.. ........+.|. .+.+++.... ...+.+|.+... .....+ ...+.. .+-+
T Consensus 286 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~-----------~g~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 286 CVQKWTLDKQ-QLGNQQVGVVAT-GNGRIISLSL-----------DGTLNFYELGHD-----EVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEEEECCTT-CGGGCEEEEEEE-ETTEEEEEET-----------TSCEEEEETTEE-----EEEEEECCCSSCEEEEET
T ss_pred EEEEECCCCC-CCCCCEEEEEEC-CCCEEEEEEC-----------CCCEEEEECCCC-----CEEEEEECCCCCEEEEEE
T ss_conf 7878847877-545714699918-9976999978-----------997899988899-----288999477787899995
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 36654568889412202113245840023445788789863112225841899986315653599999999699199998
Q 000473 462 NNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQ 541 (1471)
Q Consensus 462 ~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~G~~DG~I~I~~ 541 (1471)
+ .+.+...++.+++|+.. .. . ..|...|+++.+ +... .+++++.||.+++|.
T Consensus 348 -~-------------~l~~~~~dg~i~~w~~~-------~~-~-~~~~~~v~~~~~-~~~~----~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 348 -N-------------PLISGSYDGRIMEWSSS-------SM-H-QDHSNLIVSLDN-SKAQ----EYSSISWDDTLKVNG 399 (615)
T ss_dssp -T-------------TTEEEETTSCEEETTTT-------EE-E-CCCCSCEEEEEC-CSTT----CCEEEETTTEEEETT
T ss_pred -C-------------CCEEECCCCEEEEEECH-------HH-C-CCCCCCEEEEEE-CCCC----EEEEEECCCCEEEEE
T ss_conf -6-------------74898799959998752-------41-5-755685179997-8986----799995899799988
Q ss_pred ECCCCC-------------------CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEC-CC
Q ss_conf 045434-------------------7999884335876168998258866899999127877656768979999978-99
Q 000473 542 FDLFER-------------------HNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC 601 (1471)
Q Consensus 542 ~~~l~~-------------------~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~-Dg 601 (1471)
...... .+.....|+..+++....+. |...+.+++++ +.++++|+. |+
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~l~~~~~~d~ 467 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-----------QNYVAVGLEEGN 467 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-----------SSEEEEEETTTS
T ss_pred CCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC-CCCCCEEEEEC-----------CCEEEEEECCCC
T ss_conf 666763678469998289878999679826999446786655515-67872077883-----------888999656898
Q ss_pred CEEEEECCCCCEE-EEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCCEEEEECC
Q ss_conf 2999988999469-99802688789999889999999999999996999299998899928899517-999819999949
Q 000473 602 SIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDC 679 (1471)
Q Consensus 602 tI~iWDl~tg~~l-~~l~~H~~~V~si~~sP~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~~~g-h~~~V~~V~wsp 679 (1471)
.|++||+.+++.. ..+..|...|+++.|+|+ ++.+++++.|+.|++|++++++++..+.+ |...|++++|+|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPS------ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred EEEEEECCCCCCCCCCCCCCCCCEEEEEECCC------CCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECC
T ss_conf 69999888854353336776575079999899------998998179985998657777624676047887146999768
Q ss_pred ----------CCCEEEEEECCCCCCCCCCCEEEEEECCCC-EEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf ----------999999997589998899988999979999-089998277888122336406410134342870774343
Q 000473 680 ----------PRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVS 748 (1471)
Q Consensus 680 ----------dg~~Lvtgs~D~s~~~D~dg~I~IWDi~tg-~li~~l~gH~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s 748 (1471)
++.+|++++.| +.|++||+.++ +++..+.+|...+..+.|.+. + .
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~------------~----~ 597 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSLD--------TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP------------S----T 597 (615)
T ss_dssp CC------CCSCCEEEEEETT--------SCEEEEESSCTTCCEEETTSSTTCEEEEEEEET------------T----E
T ss_pred CCCCCCCCCCCCCEEEEECCC--------CCEEEEECCCCCEECHHHHCCCCCEEEEEECCC------------C----C
T ss_conf 323453324688889998179--------719999778885403113359430589997389------------9----7
Q ss_pred CCCEEECCCCCEEEECCC
Q ss_conf 352210159966861265
Q 000473 749 SLLLPIHEDGTFRQSQIQ 766 (1471)
Q Consensus 749 ~~l~~~~~D~~~r~w~l~ 766 (1471)
++....|++++.|++.
T Consensus 598 --l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 598 --LVSSGADACIKRWNVV 613 (615)
T ss_dssp --EEEEETTSCEEEEEEC
T ss_pred --EEEECCCCEEEEEEEE
T ss_conf --2884599639999601
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=307.14 Aligned_cols=586 Identities=10% Similarity=-0.008 Sum_probs=325.2
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98429999990899969999289969999856899982022498405553435766403332135753222222356664
Q 000473 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1471)
Q Consensus 15 p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~ 94 (1471)
+...|++++|+||+++||+|+.||.|++|+... .... ...+|..+|++++
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-----~~~~-~~~~~~~~V~~l~------------------------ 65 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-----VEVV-IKLEDRSAIKEMR------------------------ 65 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTT-----CEEE-EECSSCCCEEEEE------------------------
T ss_pred CCCCCEEEEECCCCCEEEEEECCCEEEEEECCC-----CEEE-EECCCCCCEEEEE------------------------
T ss_conf 899848999979999899992979899996899-----4799-9868999779999------------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCEECCCCCCCCCCCCCCCCCC
Q ss_conf 45546999989998379909999969991899550899878892799748999699991300236876555312223466
Q 000473 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1471)
Q Consensus 95 ~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~~~~~h~~~~i~~~ 174 (1471)
|++ +.+|+|++.|++|++||+.+++++.....+ .......+++++.++++|..
T Consensus 66 ---fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~----~~V~~v~~sp~g~~l~sgs~------------------- 118 (902)
T 2oaj_A 66 ---FVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP----GKITSIDTDASLDWMLIGLQ------------------- 118 (902)
T ss_dssp ---EET-TTEEEEEETTCEEEEEETTTCSEEEEEECS----SCEEEEECCTTCSEEEEEET-------------------
T ss_pred ---ECC-CCEEEEEECCCEEEEEECCCCCEEEEECCC----CCEEEEEECCCCCEEEEECC-------------------
T ss_conf ---908-988999989595999989999689997489----98799998799998999949-------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCEEEE-EEE-------ECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 44445678889999725999958641799-996-------3276546881799996406788711699993888299999
Q 000473 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTIV-QTV-------FHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP 246 (1471)
Q Consensus 175 ~~~~~~~~~~~~~~~~~I~i~D~~t~~~l-~tv-------~s~~~s~~~i~~~~v~~~~~~~~~~~ilva~~dG~i~vW~ 246 (1471)
++.|.+||..+..+. +.+ ....-+.+++.+++|.|+ +. ..+++++.+|.+ +|+
T Consensus 119 --------------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~---~~-~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 119 --------------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR---DI-GTVLISYEYVTL-TYS 179 (902)
T ss_dssp --------------TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT---EE-EEEEEECSSCEE-EEE
T ss_pred --------------CCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC---CC-CEEEEEECCCCE-EEE
T ss_conf --------------99299999999962650304321000254457897389997669---99-989999189849-998
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCC--CCCEEEEEEECCEEE
Q ss_conf 7889876433478-7545788420000037743573199992199699999098499997688--762002664213047
Q 000473 247 ISKESHLDREEGN-GLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGS--GSTIGEICFVDNLFC 323 (1471)
Q Consensus 247 l~~~~~~~~~~~~-~l~~~e~~i~~~~~~~~~~~~~~~is~s~~g~~i~~~~~~~~~~~l~d~--~~~lge~~~~~~~lc 323 (1471)
+...+....-... ........... .....+...+..++++++|..+++++.++. +++||. +..+... .+.-
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~g~~~~~r----~l~~ 253 (902)
T 2oaj_A 180 LVENEIKQSFIYELPPFAPGGDFSE-KTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANSGHMIMAR----TVFE 253 (902)
T ss_dssp TTTTEEEEEECCCBCTTCCCSTTCC-CTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTTCCEEEEE----CSSC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCCCEEEEE----EECC
T ss_conf 7789657998335577677765443-323456777689998599999999989993-999987899688888----5012
Q ss_pred EECCC-----------CCCEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCC-----CCEEEEEEECCCCC------
Q ss_conf 41689-----------985066558611002221013455235554129999189-----96999996147887------
Q 000473 324 LEGGS-----------TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNR-----GSAIVYAISYMNEK------ 381 (1471)
Q Consensus 324 ~~~~~-----------~~~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~-----G~~~vy~l~~~~~~------ 381 (1471)
...+. .........|.... ++++ ...++.++.+ ..+.++.+......
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~---------~pd~--~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCEN---------NPEY--TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECS---------STTE--EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECC---------CCCC--CEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHH
T ss_conf 345787776788885556774579997349---------9988--78999688777788852899954789875554255
Q ss_pred --------CCCCCEEEECCCCCCCCCEEEEEEEE----------CCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf --------76547033067568998502477841----------230557732111034455654670689983336789
Q 000473 382 --------FDYEPHFEIPAVSYPSGVKFSIHFIQ----------MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSG 443 (1471)
Q Consensus 382 --------~~~~~~~~ip~v~~~~~~~~~i~f~~----------~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~ 443 (1471)
......+.+. .......+.+.. +...++... . +..+.+|.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s-----~------dg~l~~~~~~~---- 383 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLP----TNVPIVNILPIPRQSPYFAGCHNPGLILLIL-----G------NGEIETMLYPS---- 383 (902)
T ss_dssp HHHHHHHSCSEEEEECCS----SSSCEEEEEECCSSCSHHHHTBSCSEEEEEE-----T------TSCEEEEETTT----
T ss_pred HHHHHHCCCCCEEEEECC----CCCCEEEEEECCCCCCCCCCCCCCEEEEEEC-----C------CCCEEEEECCC----
T ss_conf 654664174522787418----9995479999778898867787850699991-----7------98489997899----
Q ss_pred CCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99630485268705762036654568889412202113245840023445788789863112225841899986315653
Q 000473 444 PGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFY 523 (1471)
Q Consensus 444 ~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f 523 (1471)
+. ........ .... ......| ..........++|+...... ++....+.+|...+.++. |
T Consensus 384 -g~---~~~~~~~~-~~~l------~~~~~~v--~~~~~s~~~~~~w~~~~~~~-~~~~~~l~G~~~~v~sv~------~ 443 (902)
T 2oaj_A 384 -GI---FTDKASLF-PQNL------SWLRPLA--TTSMAASVPNKLWLGALSAA-QNKDYLLKGGVRTKRQKL------P 443 (902)
T ss_dssp -CC---EECCGGGS-CGGG------TTBTTBE--EEEEEEEEEHHHHHHHHHTT-BCCCCSCCCSBCCCCCCC------C
T ss_pred -CC---CCCCCCCC-CCCC------CCCCCCE--EEEEEEECCHHHHHHHHHCC-CCCCCCCCCCCCCCCCCC------C
T ss_conf -98---55655568-9852------2358972--48999974999998888604-699975457857787533------3
Q ss_pred CCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE-EEEE-----CCCCCEEEEEEECCCCCCCCCCCCCEEE
Q ss_conf 599--9999996991999980454347999884335876168-9982-----5886689999912787765676897999
Q 000473 524 APY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFL-----GHTGAVLCLAAHRMVGTAKGWSFNEVLV 595 (1471)
Q Consensus 524 ~P~--~lv~G~~DG~I~I~~~~~l~~~d~~~~~~d~~s~~~~-~~l~-----gH~~~V~~La~spd~~~~~~~~~~~~Lv 595 (1471)
+|+ .+++|+.||+|++|+... +. ....... ..+. +|...|++++|+|+ +++|+
T Consensus 444 spdg~~laSgs~DgtVrlWd~~~-------g~---~~~~~~~~~~l~~~~~~~h~~~V~svafspd---------g~~LA 504 (902)
T 2oaj_A 444 AEYGTAFITGHSNGSVRIYDASH-------GD---IQDNASFEVNLSRTLNKAKELAVDKISFAAE---------TLELA 504 (902)
T ss_dssp CSEEEEEEEEETTSEEEEEESSC-------CT---TTTTBCEEEEHHHHTTCSSSCCEEEEEEETT---------TTEEE
T ss_pred CCCCCEEEEECCCCCEEEEECCC-------CC---CCCCCEEEEECHHHCCCCCCCCEEEEEECCC---------CCEEE
T ss_conf 66675899965898389997877-------64---5677367750154137788876469996389---------99699
Q ss_pred EEECCCCEEEEECCCC---------------------------------------------CEEEEEECCCCCEEEEEEC
Q ss_conf 9978992999988999---------------------------------------------4699980268878999988
Q 000473 596 SGSMDCSIRIWDLGSG---------------------------------------------NLITVMHHHVAPVRQIILS 630 (1471)
Q Consensus 596 SGs~DgtI~iWDl~tg---------------------------------------------~~l~~l~~H~~~V~si~~s 630 (1471)
+|+.|++|++||+.++ +++.++.+|.++|++++|+
T Consensus 505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafS 584 (902)
T 2oaj_A 505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNS 584 (902)
T ss_dssp EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEEC
T ss_pred EEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 99458579999924865557545577866511345513467965432242368988777601469998688867799964
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEE-----EC-CCCCCCEEEEEC-----CCC---CEEEEEECCCCCCCC
Q ss_conf 9999999999999996999299998899928899-----51-799981999994-----999---999999758999889
Q 000473 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-----FP-GHPNYPAKVVWD-----CPR---GYIACLCRDHSRTSD 696 (1471)
Q Consensus 631 P~~~~~~~~~~l~S~s~DgsV~lwdl~t~~~i~~-----~~-gh~~~V~~V~ws-----pdg---~~Lvtgs~D~s~~~D 696 (1471)
|+ + .+++++.|++|++||+++...+.. +. +|...|++++|+ ||+ .+|++|+.|
T Consensus 585 pd------G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D------ 651 (902)
T 2oaj_A 585 NI------G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM------ 651 (902)
T ss_dssp BT------S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT------
T ss_pred CC------C-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECC------
T ss_conf 87------6-8999958976999988898399970246726466661399999998417898763389999568------
Q ss_pred CCCEEEEEEC---CCCEEEEEEECCC-----CCCEEEE-EEECCCCC-CCCCEEE---CCCCCCCCCCEEECCCCCEEEE
Q ss_conf 9988999979---9990899982778-----8812233-64064101-3434287---0774343352210159966861
Q 000473 697 AVDVLFIWDV---KTGARERVLRGTA-----SHSMFDH-FCKGISMN-SISGSVL---NGNTSVSSLLLPIHEDGTFRQS 763 (1471)
Q Consensus 697 ~dg~I~IWDi---~tg~li~~l~gH~-----a~vi~~~-~~~~~~~~-~~sg~v~---~g~~~~s~~l~~~~~D~~~r~w 763 (1471)
++|++||+ .+|++...+.||. +.++.+. |..+.... ..+...+ .........++.+ .+..+|.|
T Consensus 652 --~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~ 728 (902)
T 2oaj_A 652 --GEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFDDIRLI 728 (902)
T ss_dssp --SEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSSEEEEE
T ss_pred --CCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEE-ECCCEEEE
T ss_conf --739999995589986899966724407889647998586687973668878972557788777399999-35405999
Q ss_pred CCCC
Q ss_conf 2653
Q 000473 764 QIQN 767 (1471)
Q Consensus 764 ~l~~ 767 (1471)
++..
T Consensus 729 ~~~~ 732 (902)
T 2oaj_A 729 TLGK 732 (902)
T ss_dssp CTTC
T ss_pred ECCC
T ss_conf 6753
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=301.86 Aligned_cols=501 Identities=13% Similarity=0.107 Sum_probs=322.2
Q ss_pred CCCE-EEEEEECC--CCCEEEEEECCCCEEEEECCCCCCC------CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 9842-99999908--9996999928996999985689998------2022498405553435766403332135753222
Q 000473 15 PSHR-VTATSALT--QPPTLYTGGSDGSILWWSFSDSSYS------EIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEH 85 (1471)
Q Consensus 15 p~h~-Itaia~Sp--dg~~LvTGs~DG~I~iWdl~~~~~~------~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~ 85 (1471)
+... |++++|+| |+++|++|+.||.|++||+.. + +......+.+|..+|++++
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~--------------- 123 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF---DKESNSVEVNVKSEFQVLAGPISDIS--------------- 123 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE---EGGGTEEEEEEEEEEECCSSCEEEEE---------------
T ss_pred CCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCC---CCCCCCCCCCCCCHHHCCCCCEEEEE---------------
T ss_conf 788449999979678998899964898799976888---76554455420001112566379999---------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECC----CEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCE-EEEECCEECCCC
Q ss_conf 22235666445546999989998379----9099999699918995508998788927997489996-999913002368
Q 000473 86 WKAENSSNVMGKSSLDNGALISACTD----GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPR-YVCIGCCFIDTN 160 (1471)
Q Consensus 86 ~~~~~~~~~~~~~s~d~~~LvSas~D----G~I~VWdv~sG~ci~~~~l~~~~g~~~~i~~~s~~~~-ll~~G~~~id~~ 160 (1471)
+++++.+|++++.| +.+.+|| .++++.....+ ........+++++. +++++..
T Consensus 124 ------------~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~----- 181 (615)
T 1pgu_A 124 ------------WDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH---SQRINACHLKQSRPMRSMTVGD----- 181 (615)
T ss_dssp ------------ECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC---SSCEEEEEECSSSSCEEEEEET-----
T ss_pred ------------EECCCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECC---CCCEEEEEECCCCCCEEEEEEC-----
T ss_conf ------------9079998999316877755799997--89810313067---7438899988789968999957-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCC
Q ss_conf 76555312223466444456788899997259999586417999963276546881799996406788711699993888
Q 000473 161 QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVG 240 (1471)
Q Consensus 161 ~~~~~h~~~~i~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~~~s~~~i~~~~v~~~~~~~~~~~ilva~~dG 240 (1471)
++.+.+||..+.+.+.++........++.+++|.++ .+ ..+++++.+|
T Consensus 182 ----------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~--~~l~~~~~dg 229 (615)
T 1pgu_A 182 ----------------------------DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD--SG--EFVITVGSDR 229 (615)
T ss_dssp ----------------------------TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST--TC--CEEEEEETTC
T ss_pred ----------------------------CCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCC--CC--CEEEEEECCC
T ss_conf ----------------------------995999969996101320256777742899997897--78--8899986898
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC-C---CCCCCCEEEEEECCCCEEEEEECCEE-EEEECCCCCCEEEE
Q ss_conf 2999997889876433478754578842000003-7---74357319999219969999909849-99976887620026
Q 000473 241 RLQLVPISKESHLDREEGNGLCKSSSQLDMAILQ-N---GVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEI 315 (1471)
Q Consensus 241 ~i~vW~l~~~~~~~~~~~~~l~~~e~~i~~~~~~-~---~~~~~~~~is~s~~g~~i~~~~~~~~-~~~l~d~~~~lge~ 315 (1471)
.+++|++...+. + ... . .+...+..+.++ ++..+++.+.++. .+|.+..+..+..+
T Consensus 230 ~i~vwd~~~~~~---------------~---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 230 KISCFDGKSGEF---------------L---KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW 290 (615)
T ss_dssp CEEEEETTTCCE---------------E---EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCCE---------------E---EEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 089998999978---------------5---89525444567755899981-8997999848994899978889278788
Q ss_pred EEECCEEEEECCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 64213047416899850665586110022210134552355541299991899699999614788776547033067568
Q 000473 316 CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSY 395 (1471)
Q Consensus 316 ~~~~~~lc~~~~~~~~~~vgg~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~ 395 (1471)
.. ...+.........+. + .+.++.++.+|.+.+|++.... ....+. .
T Consensus 291 ~~-------~~~~~~~~~~~~~~~--~---------------~~~l~~~~~~g~i~~~d~~~~~------~~~~~~---~ 337 (615)
T 1pgu_A 291 TL-------DKQQLGNQQVGVVAT--G---------------NGRIISLSLDGTLNFYELGHDE------VLKTIS---G 337 (615)
T ss_dssp EC-------CTTCGGGCEEEEEEE--E---------------TTEEEEEETTSCEEEEETTEEE------EEEEEC---C
T ss_pred CC-------CCCCCCCCEEEEEEC--C---------------CCEEEEEECCCCEEEEECCCCC------EEEEEE---C
T ss_conf 47-------877545714699918--9---------------9769999789978999888992------889994---7
Q ss_pred CCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCC------------CCCCCCCCEEEECCCCCEEEECCC
Q ss_conf 99850247784123055773211103445565467068998333------------678999630485268705762036
Q 000473 396 PSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQ------------KHSGPGKQCRMVGEGFSFVDWVNN 463 (1471)
Q Consensus 396 ~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~------------~~~~~~~~~k~l~~g~~~~~w~~~ 463 (1471)
.......+.| +. ++... . +..+++|.+.. .+. .+...-.....+...+|...
T Consensus 338 ~~~~v~~~~~-~~---l~~~~-----~------dg~i~~w~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 338 HNKGITALTV-NP---LISGS-----Y------DGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp CSSCEEEEET-TT---TEEEE-----T------TSCEEETTTTEEECCCCSCEEEEECC-STTCCEEEETTTEEEETTEE
T ss_pred CCCCEEEEEE-CC---CEEEC-----C------CCEEEEEECHHHCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECC
T ss_conf 7787899995-67---48987-----9------99599987524157556851799978-98679999589979998866
Q ss_pred CC--------CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEC-C
Q ss_conf 65--------45688894122021132458400234457887898631122258418999863156535999999996-9
Q 000473 464 ST--------FLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF-S 534 (1471)
Q Consensus 464 ~~--------~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~~~~~h~~~Vts~~~is~~~f~P~~lv~G~~-D 534 (1471)
.. ....++| .+......+.+.+|+.... +....+ .+...++++.+. ...+++|+. |
T Consensus 402 ~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~------~~~l~~~~~~d 466 (615)
T 1pgu_A 402 KHEFGSQPKVASANNDG----FTAVLTNDDDLLILQSFTG----DIIKSV-RLNSPGSAVSLS------QNYVAVGLEEG 466 (615)
T ss_dssp EEECSSCEEEEEECSSS----EEEEEETTSEEEEEETTTC----CEEEEE-ECSSCEEEEEEC------SSEEEEEETTT
T ss_pred CCCCCCCCEEEEECCCC----CEEEEECCCCEEEEECCCC----CEEEEC-CCCCCCEEEEEC------CCEEEEEECCC
T ss_conf 67636784699982898----7899967982699944678----665551-567872077883------88899965689
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCEE-EEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 91999980454347999884335876168-99825886689999912787765676897999997899299998899946
Q 000473 535 GEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL 613 (1471)
Q Consensus 535 G~I~I~~~~~l~~~d~~~~~~d~~s~~~~-~~l~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~ 613 (1471)
|.|++|+.. ++... ..+.+|...|++++|+|+ +++|++|+.|+.|++||+.++++
T Consensus 467 ~~i~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~---------g~~l~~~~~dg~i~iw~~~~~~~ 522 (615)
T 1pgu_A 467 NTIQVFKLS---------------DLEVSFDLKTPLRAKPSYISISPS---------ETYIAAGDVMGKILLYDLQSREV 522 (615)
T ss_dssp SCEEEEETT---------------EEEEEEECSSCCSSCEEEEEECTT---------SSEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEECC---------------CCCCCCCCCCCCCCCEEEEEECCC---------CCEEEECCCCCEEEEEECCCCCC
T ss_conf 869999888---------------854353336776575079999899---------99899817998599865777762
Q ss_pred EEEEEC-CCCCEEEEEECC----------CCCCCCCCCEEEEEECCCCEEEEECCCC-CEEEEECCCCCCCEEEEECCCC
Q ss_conf 999802-688789999889----------9999999999999969992999988999-2889951799981999994999
Q 000473 614 ITVMHH-HVAPVRQIILSP----------PQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPR 681 (1471)
Q Consensus 614 l~~l~~-H~~~V~si~~sP----------~~~~~~~~~~l~S~s~DgsV~lwdl~t~-~~i~~~~gh~~~V~~V~wspdg 681 (1471)
+..+.+ |...|+++.|+| + +..+++++.|+.|++|+++++ +++..+.+|...|++++|+|++
T Consensus 523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 523 KTSRWAFRTSKINAISWKPAEKGANEEEIE------EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 596 (615)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCS------CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEECCCCCCCCCCCCC------CCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCCC
T ss_conf 467604788714699976832345332468------88899981797199997788854031133594305899973899
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf 9999997589998899988999979999
Q 000473 682 GYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1471)
Q Consensus 682 ~~Lvtgs~D~s~~~D~dg~I~IWDi~tg 709 (1471)
. |++++.| +.|++|++.++
T Consensus 597 ~-l~s~~~d--------~~v~iw~~~~~ 615 (615)
T 1pgu_A 597 T-LVSSGAD--------ACIKRWNVVLE 615 (615)
T ss_dssp E-EEEEETT--------SCEEEEEEC--
T ss_pred C-EEEECCC--------CEEEEEEEECC
T ss_conf 7-2884599--------63999960159
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=288.57 Aligned_cols=602 Identities=9% Similarity=-0.013 Sum_probs=334.2
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98429999990899969999289969999856899982022498405553435766403332135753222222356664
Q 000473 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1471)
Q Consensus 15 p~h~Itaia~Spdg~~LvTGs~DG~I~iWdl~~~~~~~~~~~~~L~GH~a~Vt~La~c~~~~~~~~g~~~~~~~~~~~~~ 94 (1471)
+...|++++|+| +++|++++.||+|++||+.. + +....+. |.+.|++++
T Consensus 57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~---~--~~~~~~~-~~~~V~~v~------------------------ 105 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS---Q--KVLTTVF-VPGKITSID------------------------ 105 (902)
T ss_dssp SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT---C--SEEEEEE-CSSCEEEEE------------------------
T ss_pred CCCCEEEEEECC-CCEEEEEECCCEEEEEECCC---C--CEEEEEC-CCCCEEEEE------------------------
T ss_conf 999779999908-98899998959599998999---9--6899974-899879999------------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEE--------ECCCCCCC-CCEEEECCCCCEEEEECCEECCCCCCCCC
Q ss_conf 4554699998999837990999996999189955--------08998788-92799748999699991300236876555
Q 000473 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRR--------KLPPWVGS-PSVICTLPSNPRYVCIGCCFIDTNQLSDH 165 (1471)
Q Consensus 95 ~~~~s~d~~~LvSas~DG~I~VWdv~sG~ci~~~--------~l~~~~g~-~~~i~~~s~~~~ll~~G~~~id~~~~~~~ 165 (1471)
+++++.+|++++.||+|++||+.++++.... .....+.. ...+.+.+.+..++++|..
T Consensus 106 ---~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~---------- 172 (902)
T 2oaj_A 106 ---TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE---------- 172 (902)
T ss_dssp ---CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS----------
T ss_pred ---ECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC----------
T ss_conf ---8799998999949992999999999626503043210002544578973899976699998999918----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECC---------------CCCCCCEEEEEEEEECCCCCC
Q ss_conf 31222346644445678889999725999958641799996327---------------654688179999640678871
Q 000473 166 HSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHG---------------NLSIGPWKFMDVVSLGEDMGK 230 (1471)
Q Consensus 166 h~~~~i~~~~~~~~~~~~~~~~~~~~I~i~D~~t~~~l~tv~s~---------------~~s~~~i~~~~v~~~~~~~~~ 230 (1471)
++.+ +||..+.+.+.++... ..+.+++..++|.+ ++
T Consensus 173 -----------------------dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp---dg-- 223 (902)
T 2oaj_A 173 -----------------------YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP---NS-- 223 (902)
T ss_dssp -----------------------SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT---TS--
T ss_pred -----------------------CCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC---CC--
T ss_conf -----------------------9849-998778965799833557767776544332345677768999859---99--
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC---CCCCCCCEECCC-CCCCCCEEEEEECC----C-CEEEEEECCE-
Q ss_conf 169999388829999978898764334787545---788420000037-74357319999219----9-6999990984-
Q 000473 231 HYGLMVDSVGRLQLVPISKESHLDREEGNGLCK---SSSQLDMAILQN-GVVEGGHLVSVATC----G-NIIALVLKDH- 300 (1471)
Q Consensus 231 ~~ilva~~dG~i~vW~l~~~~~~~~~~~~~l~~---~e~~i~~~~~~~-~~~~~~~~is~s~~----g-~~i~~~~~~~- 300 (1471)
..++.++.||.|++|++..++... .+.+.. ++... ...... .+.+.+..+++++. + .+++..+.+.
T Consensus 224 ~~lasgs~Dg~i~lWd~~~g~~~~---~r~l~~~~~~~~~~-~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 224 LHIITIHEDNSLVFWDANSGHMIM---ARTVFETEINVPQP-DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp SEEEEEETTCCEEEEETTTCCEEE---EECSSCSCTTSCCT-TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred CEEEEEECCCEEEEEECCCCCEEE---EEEECCCCCCCCCC-CCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 999999899939999878996888---88501234578777-67888855567745799973499988789996887777
Q ss_pred ---EEEEECCCCCC----------EEEE-EEE--CCEEEEECCCCCCEEEEEEEECCHHHHHHCCCCCCCCCC-CCEEEE
Q ss_conf ---99997688762----------0026-642--130474168998506655861100222101345523555-412999
Q 000473 301 ---CIFRLLGSGST----------IGEI-CFV--DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTF-YENFAV 363 (1471)
Q Consensus 301 ---~~~~l~d~~~~----------lge~-~~~--~~~lc~~~~~~~~~~vgg~~~~~~~~~~~~~~~~~~~~~-~~~i~v 363 (1471)
..++.++.+.. +..+ ..+ ...+.. . .......-.+...... ...+.. ...+++
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~sp-------~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL--P-TNVPIVNILPIPRQSP-------YFAGCHNPGLILL 369 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC--S-SSSCEEEEEECCSSCS-------HHHHTBSCSEEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC--C-CCCCEEEEEECCCCCC-------CCCCCCCCEEEEE
T ss_conf 8885289995478987555425565466417452278741--8-9995479999778898-------8677878506999
Q ss_pred ECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 91899699999614788776547033067568998502477841230557732111034455654670689983336789
Q 000473 364 WDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSG 443 (1471)
Q Consensus 364 w~~~G~~~vy~l~~~~~~~~~~~~~~ip~v~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~P~v~vwsl~~~~~~ 443 (1471)
.+.+|.+++|++............ .+.....+.....+.|.... .+.|........
T Consensus 370 ~s~dg~l~~~~~~~g~~~~~~~~~--~~~l~~~~~~v~~~~~s~~~----------------------~~~w~~~~~~~~ 425 (902)
T 2oaj_A 370 ILGNGEIETMLYPSGIFTDKASLF--PQNLSWLRPLATTSMAASVP----------------------NKLWLGALSAAQ 425 (902)
T ss_dssp EETTSCEEEEETTTCCEECCGGGS--CGGGTTBTTBEEEEEEEEEE----------------------HHHHHHHHHTTB
T ss_pred ECCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCEEEEEEEECC----------------------HHHHHHHHHCCC
T ss_conf 917984899978999855655568--98522358972489999749----------------------999988886046
Q ss_pred CCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC--CC-----CCCCCCEEEEE
Q ss_conf 996304852687057620366545688894122021132458400234457887898631--12-----22584189998
Q 000473 444 PGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRD--DF-----VHKEKIVSSSM 516 (1471)
Q Consensus 444 ~~~~~k~l~~g~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~v~~Wd~~~~~~~g~~~~--~~-----~~h~~~Vts~~ 516 (1471)
.+ .....|+...++.+.+ .++|. .+.+.+.++++++|+............ .+ .+|...|+++.
T Consensus 426 ~~---~~~l~G~~~~v~sv~~----spdg~---~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva 495 (902)
T 2oaj_A 426 NK---DYLLKGGVRTKRQKLP----AEYGT---AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS 495 (902)
T ss_dssp CC---CCSCCCSBCCCCCCCC----CSEEE---EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE
T ss_pred CC---CCCCCCCCCCCCCCCC----CCCCC---EEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEE
T ss_conf 99---9754578577875333----66675---89996589838999787764567736775015413778887646999
Q ss_pred EECCCCCCCCEEEEEECCCCEEEEEECCCCC---------CCCCCC-----C---------------CCCC-CCCEEEEE
Q ss_conf 6315653599999999699199998045434---------799988-----4---------------3358-76168998
Q 000473 517 VISESFYAPYAIVYGFFSGEIEVIQFDLFER---------HNSPGA-----S---------------LKVN-SHVSRQYF 566 (1471)
Q Consensus 517 ~is~~~f~P~~lv~G~~DG~I~I~~~~~l~~---------~d~~~~-----~---------------~d~~-s~~~~~~l 566 (1471)
+.++.. .+++|+.||+|++|+++.... .+.... . .... ..++...+
T Consensus 496 fspdg~----~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 571 (902)
T 2oaj_A 496 FAAETL----ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV 571 (902)
T ss_dssp EETTTT----EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE
T ss_pred ECCCCC----EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 638999----6999945857999992486555754557786651134551346796543224236898877760146999
Q ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEE-----EE-CCCCCEEEEEEC-----CCCCC
Q ss_conf 25886689999912787765676897999997899299998899946999-----80-268878999988-----99999
Q 000473 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-----MH-HHVAPVRQIILS-----PPQTE 635 (1471)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~-----l~-~H~~~V~si~~s-----P~~~~ 635 (1471)
.+|.+.|++++|+|+ + +|++|+.|++|++||+.++..+.. +. +|.+.|++++|+ ||.
T Consensus 572 ~~h~~~V~svafSpd---------G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg-- 639 (902)
T 2oaj_A 572 HANKGKTSAINNSNI---------G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG-- 639 (902)
T ss_dssp CCCSCSEEEEEECBT---------S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS--
T ss_pred ECCCCCEEEEEECCC---------C-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCC--
T ss_conf 868886779996487---------6-8999958976999988898399970246726466661399999998417898--
Q ss_pred CCCCCEEEEEECCCCEEEEEC---CCCCEEEEECCCC-----CCCEEEE-EC----------------------CCCCEE
Q ss_conf 999999999969992999988---9992889951799-----9819999-94----------------------999999
Q 000473 636 HPWSDCFLSVGEDFSVALASL---ETLRVERMFPGHP-----NYPAKVV-WD----------------------CPRGYI 684 (1471)
Q Consensus 636 ~~~~~~l~S~s~DgsV~lwdl---~t~~~i~~~~gh~-----~~V~~V~-ws----------------------pdg~~L 684 (1471)
+.+.++++++.|++|++|++ .++++...+.+|. ++|..+. |+ +++ ++
T Consensus 640 -~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~ 717 (902)
T 2oaj_A 640 -YSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPG-IV 717 (902)
T ss_dssp -SEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCE-EE
T ss_pred -CCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCE-EE
T ss_conf -7633899995687399999955899868999667244078896479985866879736688789725577887773-99
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEEC
Q ss_conf 99975899988999889999799990899982778881223364064101343428707743433522101599668612
Q 000473 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1471)
Q Consensus 685 vtgs~D~s~~~D~dg~I~IWDi~tg~li~~l~gH~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~~r~w~ 764 (1471)
++.+ + ..|++|++.++++.+...+|...+..+.+.. +....+ .......++.++.|++++.|+
T Consensus 718 l~~~-~--------~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~---~~~~~~-----~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 718 LITG-F--------DDIRLITLGKSKSTHKGFKYPLAATGLSYIS---TVEKNN-----DRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp EEEC-S--------SEEEEECTTCCCEEEEECSSCEEEEEEEEEE---EECSSS-----CEEEEEEEEEEETTSEEEEEE
T ss_pred EEEE-C--------CCEEEEECCCCCCEEEECCCCEEEEEEEEEE---ECCCCC-----CCCCCEEEEEEECCCCEEEEE
T ss_conf 9993-5--------4059996753351236725620144777887---013555-----446736999992799599997
Q ss_pred CCCCCCCC
Q ss_conf 65333333
Q 000473 765 IQNDERGV 772 (1471)
Q Consensus 765 l~~~~~~~ 772 (1471)
+..++...
T Consensus 781 ~p~l~~~~ 788 (902)
T 2oaj_A 781 IPDFKEQM 788 (902)
T ss_dssp TTTCCEEE
T ss_pred CCCHHHHH
T ss_conf 85647784
Done!