BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000474
(1470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 43/302 (14%)
Query: 1170 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1229
++YFR +GR +A AL G+ +D FS FYK +L + L D+ D EF
Sbjct: 130 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEF---------- 179
Query: 1230 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1287
L + +N EE DL + +++ L + LKP N+ + N E
Sbjct: 180 ---YNSLIWVKENNIEEC-DLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKE 230
Query: 1288 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEP 1343
EYI +V + + G+ Q +AF GFN++ LQ F EL+ LLCG +E+ W+
Sbjct: 231 EYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQR 290
Query: 1344 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKL 1403
A+ Y S I+ + + E +++ QFVTG RLP GG A L
Sbjct: 291 HAIYRR------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL---- 340
Query: 1404 TIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1463
N ++ LP TC N L LPPY + E + +KL++AI E
Sbjct: 341 --------MGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 392
Query: 1464 QG 1465
+G
Sbjct: 393 EG 394
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 195/430 (45%), Gaps = 98/430 (22%)
Query: 1052 KVRVSRNRILDSAAKVMEMYSSQ-----KAVLEVEYFGEVGTGLG-PTLEFYTLLSRDLQ 1105
+++V R+ I+D A +EM + + K L VE+ GE G G + EF+ L+ ++
Sbjct: 7 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIF 66
Query: 1106 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPW-PPSADASEGG 1164
+ M+ + S++ LF W PS+ +EG
Sbjct: 67 NPDIGMFTYDESTK-----------------------------LF---WFNPSSFETEGQ 94
Query: 1165 QFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQ 1224
F L+G V+ A+ + +LD+ F Y+ ++G + D L
Sbjct: 95 --------FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRD-----------LG 135
Query: 1225 ELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFT-----LPGYPD-YILKPGD 1278
+ H ++ Q L+ + L + G +D+ + F L G P Y LK
Sbjct: 136 DSHPVLY--QSLKDL----------LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENG 183
Query: 1279 ENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLC 1335
+ + I N +E+++L D + + +Q +AFR GF+ V + + L+ +F P E++ L+C
Sbjct: 184 DKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 243
Query: 1336 GRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 1395
G R L + AL E ++D GYT S I EI+ FT +Q+R F QF TG R P GG
Sbjct: 244 GSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGG 302
Query: 1396 LAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKK 1455
L L K+ I + P+T + LP+ TC N L LP YS+KE + ++
Sbjct: 303 LGKL--KMIIAK----NGPDT------------ERLPTSHTCFNVLLLPEYSSKEKLKER 344
Query: 1456 LVYAISEGQG 1465
L+ AI+ +G
Sbjct: 345 LLKAITYAKG 354
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 129/301 (42%), Gaps = 43/301 (14%)
Query: 1170 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1229
+ YF +GR +A AL G+ +D FS FYK +L +L + D+ D EF
Sbjct: 111 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF---------- 160
Query: 1230 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1287
L + +N EE + +E L + LK G N+ + N +
Sbjct: 161 ---YNSLIWIRDNNIEECGLEMYFSVDME------ILGKVTSHDLKLGGSNILVTEENKD 211
Query: 1288 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEP 1343
EYI L+ + G+ Q +AF GFN+V + LQ F EL+ +LCG +E+ W+
Sbjct: 212 EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQR 271
Query: 1344 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKL 1403
+ H YT S I+ + + E + + QFVTG RLP GG A L
Sbjct: 272 NTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL---- 321
Query: 1404 TIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1463
N D LP TC N L LPPY + E + +KL++AI E
Sbjct: 322 --------MGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
Query: 1464 Q 1464
+
Sbjct: 374 E 374
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 189/424 (44%), Gaps = 77/424 (18%)
Query: 1052 KVRVSRNRIL-DSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQRV 1107
++++ R +L DS ++M + + KA L +E+ GE G G E++ L+S+++
Sbjct: 30 EMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNP 89
Query: 1108 GLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFS 1167
++ S+++N +++I+ + G +
Sbjct: 90 YYGLFEY-SATDNYTLQINPNSGLCNEDH------------------------------- 117
Query: 1168 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1227
+ YF+ +GRV A+ G+LLD F FYK++L + LHD+ D+E+ L+ +
Sbjct: 118 --LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWI- 174
Query: 1228 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDI--N 1284
+ +D E +DLRF +D L G + LK G + +
Sbjct: 175 -----------LENDPTE--LDLRF--------IIDEELFGQTHQHELKNGGSEIVVTNK 213
Query: 1285 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPA 1344
N +EYI LV+ I +QM AF+ GF ++ ++IF +EL+ L+CG ++ +
Sbjct: 214 NKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV-DVN 272
Query: 1345 ALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLT 1404
EH K+ +GY+A I + + +++ QFVTG R+P G A L
Sbjct: 273 DWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAEL----- 327
Query: 1405 IVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1464
+ S P + T + LP TC N L LPPY + E ++ KL AI Q
Sbjct: 328 ----YGSNGPQSF---TVEQWGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQ 380
Query: 1465 GSFD 1468
G FD
Sbjct: 381 G-FD 383
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 183/423 (43%), Gaps = 76/423 (17%)
Query: 1050 RQKVRVSRNRILD-SAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQ 1105
R ++++ RN I + S ++M + KA L +E+ E G G E++ LLS+++
Sbjct: 27 RFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMF 86
Query: 1106 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1165
++ S+++N +++I+ + G +
Sbjct: 87 NPYYGLFEY-SATDNYTLQINPNSGLCNEDH----------------------------- 116
Query: 1166 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1225
+ YF +GRV A+ G+LLD F FYK++LG ++ L+D+ D+E+ L+
Sbjct: 117 ----LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKW 172
Query: 1226 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN 1284
+ + +D E +DL F C+D G + LKP + +
Sbjct: 173 I------------LENDPTE--LDLMF--------CIDEENFGQTYQVDLKPNGSEIMVT 210
Query: 1285 --NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWE 1342
N EYI LV+ + +QM AF GF ++ I ++IF +EL+ L+CG ++ +
Sbjct: 211 NENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV-D 269
Query: 1343 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPK 1402
+H + +GY P I + + +++ QFVTG R+P G A L
Sbjct: 270 VNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL--- 326
Query: 1403 LTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 1462
+ S P T + + LP T N L LPPY T E + +KL+ A+
Sbjct: 327 ------YGSNGPQLF---TIEQWGSPEKLPRAHTAFNRLDLPPYETFEDLREKLLMAVEN 377
Query: 1463 GQG 1465
QG
Sbjct: 378 AQG 380
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 183/423 (43%), Gaps = 76/423 (17%)
Query: 1050 RQKVRVSRNRILD-SAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQ 1105
R ++++ RN I + S ++M + KA L +E+ E G G E++ LLS+++
Sbjct: 27 RFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMF 86
Query: 1106 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1165
++ S+++N +++I+ + G +
Sbjct: 87 NPYYGLFEY-SATDNYTLQINPNSGLCNEDH----------------------------- 116
Query: 1166 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1225
+ YF +GRV A+ G+LLD F FYK++LG ++ L+D+ D+E+ L+
Sbjct: 117 ----LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKW 172
Query: 1226 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN 1284
+ + +D E +DL F C+D G + LKP + +
Sbjct: 173 I------------LENDPTE--LDLMF--------CIDEENFGQTYQVDLKPNGSEIMVT 210
Query: 1285 --NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWE 1342
N EYI LV+ + +QM AF GF ++ I ++IF +EL+ L+CG ++ +
Sbjct: 211 NENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV-D 269
Query: 1343 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPK 1402
+H + +GY P I + + +++ QFVTG R+P G A L
Sbjct: 270 VNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL--- 326
Query: 1403 LTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 1462
+ S P T + + LP T N L LPPY T E + +KL+ A+
Sbjct: 327 ------YGSNGPQLF---TIEQWGSPEKLPRAHTSFNRLDLPPYETFEDLREKLLMAVEN 377
Query: 1463 GQG 1465
QG
Sbjct: 378 AQG 380
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 116/437 (26%), Positives = 177/437 (40%), Gaps = 88/437 (20%)
Query: 1047 RLERQKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRD 1103
R E V V R+ + + + + + S + K L + + GE G G L E+Y ++SR+
Sbjct: 44 RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISRE 103
Query: 1104 LQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEG 1163
+ A++R++ GD V + PS+ A+
Sbjct: 104 MFNPMYALFRTSP-----------------------GDRVTYTIN-------PSSHANPN 133
Query: 1164 GQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKIL 1223
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D F + L
Sbjct: 134 H-----LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 188
Query: 1224 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI 1283
L + +D DL F E F + D LKP N+ +
Sbjct: 189 VYL------------LENDVSTLGYDLTFSTEVQE-----FGVAEVRD--LKPNGANILV 229
Query: 1284 N--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELW 1341
N +EY+ LV + I +Q+ AF GF ++ + IFT EL+ L+ G
Sbjct: 230 TEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGL---- 285
Query: 1342 EPAALAEHIKFD---HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1398
P + +K + H Y + S I + F + F QFVTG ++P G A
Sbjct: 286 -PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAA 344
Query: 1399 LN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMY 1453
L K I R ST D LPS TC N L LP Y + E +
Sbjct: 345 LEGMNGIQKFQIHRDDRST----------------DRLPSAHTCFNQLDLPAYESFEKLR 388
Query: 1454 KKLVYAISEGQGSFDLS 1470
L+ AI E F L+
Sbjct: 389 HMLLLAIQEASEGFGLA 405
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/437 (26%), Positives = 176/437 (40%), Gaps = 88/437 (20%)
Query: 1047 RLERQKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRD 1103
R E V V R+ + + + + + S + K L + + GE G G L E+Y ++SR+
Sbjct: 27 RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISRE 86
Query: 1104 LQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEG 1163
+ A++R++ GD V + PS+ +
Sbjct: 87 MFNPMYALFRTSP-----------------------GDRVTYTIN-------PSSHCNPN 116
Query: 1164 GQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKIL 1223
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D F + L
Sbjct: 117 H-----LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 171
Query: 1224 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI 1283
L + +D DL F E F + D LKP N+ +
Sbjct: 172 VYL------------LENDVSTLGYDLTFSTEVQE-----FGVCEVRD--LKPNGANILV 212
Query: 1284 N--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELW 1341
N +EY+ LV + I +Q+ AF GF ++ + IFT EL+ L+ G
Sbjct: 213 TEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGL---- 268
Query: 1342 EPAALAEHIKFD---HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1398
P + +K + H Y + S I + F + F QFVTG ++P G A
Sbjct: 269 -PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAA 327
Query: 1399 LN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMY 1453
L K I R ST D LPS TC N L LP Y + E +
Sbjct: 328 LEGMNGIQKFQIHRDDRST----------------DRLPSAHTCFNQLDLPAYESFEKLR 371
Query: 1454 KKLVYAISEGQGSFDLS 1470
L+ AI E F L+
Sbjct: 372 HMLLLAIQECSEGFGLA 388
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 99.4 bits (246), Expect = 1e-20, Method: Composition-based stats.
Identities = 85/302 (28%), Positives = 131/302 (43%), Gaps = 54/302 (17%)
Query: 1170 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1229
+ YF +GRV A+ G+LLD F FYK LG ++ L+D D+E+ L+ +
Sbjct: 132 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWI--- 188
Query: 1230 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN--NL 1286
+ +D E +DL F C+D G + LKP + + N
Sbjct: 189 ---------LENDPTE--LDLXF--------CIDEENFGQTYQVDLKPNGSEIXVTNENK 229
Query: 1287 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WE 1342
EYI LV+ + +Q AF GF ++ I ++IF +EL+ L CG ++ W
Sbjct: 230 REYIDLVIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENELELLXCGLGDVDVNDWR 289
Query: 1343 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL--- 1399
+H + +GY P I + + +++ QFVTG R+P G A L
Sbjct: 290 -----QHSIYKNGYCPNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSRVPXNGFAELYGS 344
Query: 1400 -NPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVY 1458
P+L + + S + LP TC N L LPPY T E + +KL+
Sbjct: 345 NGPQLFTIEQWGSP----------------EKLPRAHTCFNRLDLPPYETFEDLREKLLX 388
Query: 1459 AI 1460
A+
Sbjct: 389 AV 390
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring
The E2 To The Hect Domain
Length = 380
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 55/308 (17%)
Query: 1170 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1229
+ YF +GR+ A+ G +D F+ FYK +LG + L D D + LH
Sbjct: 112 LSYFHFVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPD-------LH-- 162
Query: 1230 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPG-YPDYILKPGDENVDIN--NL 1286
L + ++ V+D F C++ G + LKP +++ +N N
Sbjct: 163 ----NSLVWILENDITGVLDHTF--------CVEHNAYGEIIQHELKPNGKSIPVNEENK 210
Query: 1287 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WE 1342
+EY+ L V+ GI Q A + GFN+V L+ F EL+ ++CG ++ W+
Sbjct: 211 KEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWK 270
Query: 1343 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA-FCQFVTGAPRLPPGGLAVLN- 1400
+H D IV EF +++RA QFVTG+ R+P G L
Sbjct: 271 VNTRLKHCTPDSN-------IVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQG 323
Query: 1401 ---PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLV 1457
P+L + + ++ ++LP TC N + +PPY + E +Y+KL+
Sbjct: 324 AAGPRLFTIHQ---------------IDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLL 368
Query: 1458 YAISEGQG 1465
AI E G
Sbjct: 369 TAIEETCG 376
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 36/298 (12%)
Query: 1170 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1229
+ YF+ +GRV+ + R LD F A YK++L ++ L D+ DAE
Sbjct: 162 LNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV---------- 211
Query: 1230 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1287
L M ++ + V+DL F A E T+ LKP N+++ N +
Sbjct: 212 ---YNSLNWMLENSIDGVLDLTF-SADDERFGEVVTVD------LKPDGRNIEVTDGNKK 261
Query: 1288 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALA 1347
EY+ L + + Q +AF GFN++ + +F EL+ L+ G E+ +
Sbjct: 262 EYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEI-DIEDWK 320
Query: 1348 EHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1407
+H + GY I + + E+ +Q+ QF TG R+P G L
Sbjct: 321 KHTDY-RGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDL-------- 371
Query: 1408 KHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 1465
S P T LP TC N + LP Y + M +KL A+ E G
Sbjct: 372 -QGSDGPRRF---TIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG 425
>pdb|3EYF|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Plus Gb Peptide
pdb|3EYF|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Plus Gb Peptide
pdb|3EYO|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
pdb|3EYO|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Length = 216
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 1292 LVVDATVK-TGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHI 1350
L+ DA+++ TGI + +G + IT L+ P + C +R +W P +
Sbjct: 48 LIFDASIRATGIPARFSGSGSGTDFTLTITRLE---PEDFAVYYCQQRSMWPPVTFGQGT 104
Query: 1351 KFDHGYTAKSPAI 1363
K + T +P++
Sbjct: 105 KLEIKRTVAAPSV 117
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 1428 DDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1467
D LP+ TC + L +P YS+K+I+ +KL+ AI F
Sbjct: 78 DQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 117
>pdb|2YO0|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfi)
pdb|2YO1|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
pdb|2YO1|B Chain B, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
pdb|2YO1|C Chain C, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
Length = 322
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 398 IGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVL 457
IGSG +AA N + G EAN + + +R + +A + N+ DA +VA M +
Sbjct: 231 IGSGSIAAAENSVALGTNSVADEANTVSVGSSTQQRRITNVAAGV-NNTDAVNVAQMKQI 289
Query: 458 VQKLQNALSSL 468
K++ LS +
Sbjct: 290 EDKIEEILSKI 300
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin From
D. Melanogaster
Length = 257
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 54 AEQIFEIVNLAN-ELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEV 112
AEQ + I++L ++L + + +++ F++G VV +S A + D + + ++V
Sbjct: 135 AEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADV 194
Query: 113 SAREKLLSDQPELLQQFGMDLLPVLIQIYG----SSVNSPVRHKCLSVIGKL 160
L + E LQ+ G ++L +L+Q +G SSVN L I K+
Sbjct: 195 PDHCTLF--RREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKM 244
>pdb|1OW4|A Chain A, Crystal Structure Of A Pheromone Binding Protein From The
Cockroach Leucophaea Maderae In Complex With The
Fluorescent Reporter Ans (1-
Anilinonaphtalene-8-sulfonic Acid)
pdb|1OW4|B Chain B, Crystal Structure Of A Pheromone Binding Protein From The
Cockroach Leucophaea Maderae In Complex With The
Fluorescent Reporter Ans (1-
Anilinonaphtalene-8-sulfonic Acid)
pdb|1P28|A Chain A, The Crystal Structure Of A Pheromone Binding Protein From
The Cockroach Leucophaea Maderae In Complex With A
Component Of The Pheromonal Blend:
3-Hydroxy-Butan-2-One.
pdb|1P28|B Chain B, The Crystal Structure Of A Pheromone Binding Protein From
The Cockroach Leucophaea Maderae In Complex With A
Component Of The Pheromonal Blend: 3-Hydroxy-Butan-2-One
Length = 129
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 74 GTISLPSSSNMFVK---GPVVRKSPASSSGKQDD----TNGNASEVSAREKLLS------ 120
G S P+SS K GP+VR+ S S +DD N N E + LL+
Sbjct: 4 GINSDPNSSTQSYKDAMGPLVRECMGSVSATEDDFKTVLNRNPLESRTAQCLLACALDKV 63
Query: 121 --DQPELLQQFGMDLLPVLIQIYG 142
PE G DL+PV+ ++YG
Sbjct: 64 GLISPEGAIYTGDDLMPVMNRLYG 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,417,644
Number of Sequences: 62578
Number of extensions: 1316668
Number of successful extensions: 2698
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2651
Number of HSP's gapped (non-prelim): 22
length of query: 1470
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1359
effective length of database: 8,027,179
effective search space: 10908936261
effective search space used: 10908936261
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)