Query 000474
Match_columns 1470
No_of_seqs 426 out of 1561
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0170 E3 ubiquitin protein l 100.0 4E-144 8E-149 1231.8 39.7 618 795-1470 1-621 (621)
2 COG5021 HUL4 Ubiquitin-protein 100.0 3.2E-77 6.8E-82 750.3 24.0 433 963-1470 412-872 (872)
3 KOG0941 E3 ubiquitin protein l 100.0 9.8E-75 2.1E-79 699.3 26.4 418 957-1469 419-849 (850)
4 cd00078 HECTc HECT domain; C-t 100.0 3.1E-74 6.8E-79 683.7 27.2 341 1051-1468 1-352 (352)
5 KOG0942 E3 ubiquitin protein l 100.0 5.2E-74 1.1E-78 692.5 23.8 386 994-1470 599-1001(1001)
6 smart00119 HECTc Domain Homolo 100.0 2.3E-72 5.1E-77 661.4 26.4 320 1074-1470 7-336 (336)
7 KOG4427 E3 ubiquitin protein l 100.0 1.4E-65 3.1E-70 602.4 25.7 396 995-1470 670-1096(1096)
8 KOG0939 E3 ubiquitin-protein l 100.0 5E-66 1.1E-70 612.5 21.6 381 979-1469 323-719 (720)
9 KOG0168 Putative ubiquitin fus 100.0 5.1E-63 1.1E-67 591.6 28.0 580 1-633 401-1020(1051)
10 PF00632 HECT: HECT-domain (ub 100.0 6.9E-61 1.5E-65 562.7 18.4 307 1098-1470 1-317 (317)
11 KOG0940 Ubiquitin protein liga 100.0 9.3E-40 2E-44 380.3 13.0 329 1049-1461 15-358 (358)
12 KOG0943 Predicted ubiquitin-pr 100.0 2.5E-37 5.5E-42 370.6 21.7 258 1167-1464 2739-3011(3015)
13 KOG0168 Putative ubiquitin fus 98.7 2.7E-08 5.9E-13 123.0 8.5 156 377-541 860-1023(1051)
14 KOG0166 Karyopherin (importin) 87.7 12 0.00026 47.2 15.9 197 7-232 260-469 (514)
15 PF12460 MMS19_C: RNAPII trans 80.8 7.1 0.00015 48.5 10.0 89 126-217 317-405 (415)
16 cd00020 ARM Armadillo/beta-cat 71.4 20 0.00042 35.2 8.5 81 122-205 38-119 (120)
17 KOG1058 Vesicle coat complex C 69.2 89 0.0019 41.0 14.9 60 111-175 299-359 (948)
18 cd00020 ARM Armadillo/beta-cat 65.3 47 0.001 32.5 9.8 95 133-231 8-102 (120)
19 PF09324 DUF1981: Domain of un 62.4 42 0.0009 32.4 8.3 70 129-203 14-85 (86)
20 cd03568 VHS_STAM VHS domain fa 59.3 29 0.00062 36.9 7.2 71 134-231 21-91 (144)
21 PF03224 V-ATPase_H_N: V-ATPas 58.6 23 0.00049 42.3 7.1 93 133-230 106-201 (312)
22 PF08167 RIX1: rRNA processing 58.0 53 0.0011 35.6 9.2 98 120-218 54-155 (165)
23 KOG0170 E3 ubiquitin protein l 52.5 13 0.00029 46.0 3.7 64 961-1024 128-191 (621)
24 PF10508 Proteasom_PSMB: Prote 52.3 2.4E+02 0.0051 36.3 15.1 94 134-232 162-255 (503)
25 PF13513 HEAT_EZ: HEAT-like re 48.8 32 0.00069 29.7 4.7 42 118-160 14-55 (55)
26 PF02985 HEAT: HEAT repeat; I 44.9 42 0.00091 25.7 4.2 30 133-163 1-30 (31)
27 cd03567 VHS_GGA VHS domain fam 44.2 36 0.00077 36.0 5.0 71 134-231 22-92 (139)
28 PF12348 CLASP_N: CLASP N term 41.1 1.2E+02 0.0026 34.0 9.1 96 125-230 87-187 (228)
29 PTZ00429 beta-adaptin; Provisi 37.2 1.9E+02 0.0041 39.0 11.1 73 134-212 142-214 (746)
30 smart00288 VHS Domain present 36.5 64 0.0014 33.7 5.4 44 188-231 48-91 (133)
31 PF12717 Cnd1: non-SMC mitotic 34.3 1.3E+02 0.0029 32.7 7.8 85 119-216 16-103 (178)
32 PF00790 VHS: VHS domain; Int 33.6 76 0.0016 33.3 5.5 70 136-232 28-97 (140)
33 PF01602 Adaptin_N: Adaptin N 33.6 1.1E+02 0.0024 38.7 8.2 80 122-213 108-187 (526)
34 KOG4413 26S proteasome regulat 33.5 1.2E+02 0.0026 36.2 7.3 83 146-231 184-266 (524)
35 cd03569 VHS_Hrs_Vps27p VHS dom 33.3 58 0.0013 34.5 4.6 44 188-231 52-95 (142)
36 KOG1967 DNA repair/transcripti 32.5 1E+02 0.0023 41.3 7.4 104 125-230 860-1005(1030)
37 cd00197 VHS_ENTH_ANTH VHS, ENT 32.0 83 0.0018 31.7 5.3 49 180-228 40-88 (115)
38 KOG2956 CLIP-associating prote 31.9 58 0.0012 40.6 4.7 44 117-161 432-479 (516)
39 PLN03200 cellulose synthase-in 31.9 1.1E+03 0.024 35.7 17.6 151 5-232 467-621 (2102)
40 PF04826 Arm_2: Armadillo-like 30.9 2.3E+02 0.005 33.1 9.3 69 134-206 136-205 (254)
41 KOG2137 Protein kinase [Signal 30.5 1E+02 0.0022 40.4 6.8 73 132-210 428-500 (700)
42 KOG2160 Armadillo/beta-catenin 30.2 3.6E+02 0.0079 32.8 10.8 106 121-229 112-219 (342)
43 PF11841 DUF3361: Domain of un 29.9 3.2E+02 0.007 29.7 9.4 81 128-213 58-138 (160)
44 PTZ00429 beta-adaptin; Provisi 27.3 2.8E+02 0.0061 37.4 10.3 71 144-217 267-337 (746)
45 PF11816 DUF3337: Domain of un 23.6 93 0.002 37.7 4.6 26 793-819 290-315 (331)
46 PF10363 DUF2435: Protein of u 23.6 2.2E+02 0.0047 28.0 6.3 72 143-218 13-84 (92)
47 cd03561 VHS VHS domain family; 23.1 1.1E+02 0.0023 31.9 4.4 43 189-231 49-91 (133)
48 KOG1087 Cytosolic sorting prot 22.7 99 0.0022 39.1 4.7 67 137-230 25-91 (470)
49 PF12830 Nipped-B_C: Sister ch 22.2 4.2E+02 0.0091 29.3 9.0 94 122-228 2-95 (187)
50 KOG1293 Proteins containing ar 21.9 2.8E+02 0.006 36.3 8.2 80 138-218 466-545 (678)
51 KOG1062 Vesicle coat complex A 20.4 5.8E+02 0.013 34.3 10.6 94 130-232 140-235 (866)
52 PF11701 UNC45-central: Myosin 20.4 2.1E+02 0.0046 30.7 6.0 81 144-230 16-96 (157)
No 1
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-144 Score=1231.81 Aligned_cols=618 Identities=55% Similarity=0.868 Sum_probs=536.0
Q ss_pred eEEEEECCccCCCCCcHHHHHHHHhhcccccccccCCCCccCCCCCCCcccceEEEEEecCCcccccccCCCCCCCCCCC
Q 000474 795 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS 874 (1470)
Q Consensus 795 ~l~f~~~~~~l~~~~Ti~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~ 874 (1470)
+|.|++.|+.+++++|+||||+|+..+.+++ ..++ +. .... |+.+|+|+|++-+.......+++.+...++.+
T Consensus 1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e----~~s~-s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~ 73 (621)
T KOG0170|consen 1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDE----DESN-PL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP 73 (621)
T ss_pred CceEEeccccccccchHHHHHHHHhhhcccc----ccCC-cc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence 4799999999999999999999998877643 1111 11 2233 99999999997554433333332211111222
Q ss_pred CCCCCCCCCCC-ccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhccccccccccccccccccc
Q 000474 875 SKSGSASNSNS-DSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS 953 (1470)
Q Consensus 875 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lL~~l~~ln~~~~~~~~~~~~~~~~~~~~~~l~~~~ 953 (1470)
.+.... +... +.+|..+.+...+ ...+..++.+++++|+|+. ....| -.++++.
T Consensus 74 ~~~~~~-n~~~~~~~h~~~~~~~~~-----~~~e~~~~~~~~i~l~rv~--~~~~~-----------------~~l~d~~ 128 (621)
T KOG0170|consen 74 TKTSPT-NKKHDELSHDPSVSNPLL-----VPLENINPSLDVILLLRVA--IEGYW-----------------YYLDDLA 128 (621)
T ss_pred ccccCc-CCchhhccCChhhccccc-----cchhhcCchHHHHHHHhhc--ccchh-----------------hhhhhhh
Confidence 222111 1111 2233222221111 1344445788888888882 22222 2334444
Q ss_pred CCCCCCChhhHhcccchHHHHHHHHHHHHHhcCCCChhHhhhhccCCcccChhhHHHHHHhhhhchhHHHHHHHHhhcCC
Q 000474 954 GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGAD 1033 (1470)
Q Consensus 954 ~~~~~~~~~~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~ 1033 (1470)
.....+|.++|||+|||+|++||++||+++|+|.+|.||.+|++.|||||||+||++|||+|+||++|++++||+.++.+
T Consensus 129 ~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~ 208 (621)
T KOG0170|consen 129 MCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGS 208 (621)
T ss_pred hhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCC
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred CCCCCcchhhhcccccccccccChhHHHHHHHHHHhhccCCCccEEEEEeCccccCccchHHHHHHHHHHHhcCCCCCcc
Q 000474 1034 GHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1113 (1470)
Q Consensus 1034 ~~~~~~~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~~~k~~LeVeF~gE~G~g~GptrEFfslvs~El~~~~l~lf~ 1113 (1470)
.+++.++...++|||+|+|++|+|++||++|+++|++|++++.+|||||++|+|+|+|||+|||++|++||++++++|||
T Consensus 209 ~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR 288 (621)
T KOG0170|consen 209 KDGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWR 288 (621)
T ss_pred CCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhccccccc
Confidence 76666677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCccccc
Q 000474 1114 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1193 (1470)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~ 1193 (1470)
++.-+ +.+ +++ .+...+|..+.||||.||++....+++ .+++++|++||+||||||+|+|++|+|
T Consensus 289 ~~s~s----~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se~---~kvi~~F~~LG~~vAkal~D~Rildlp 353 (621)
T KOG0170|consen 289 CNSVS----YRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSEN---EKVIELFRLLGTFVAKALQDGRILDLP 353 (621)
T ss_pred cCcee----ecc-------CCC-CCCcchhhhccccCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHhcCceEeee
Confidence 98542 111 122 456789999999999999997655553 689999999999999999999999999
Q ss_pred CCHHHHHHHhCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCCcccccccccccCCCCcee
Q 000474 1194 FSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI 1273 (1470)
Q Consensus 1194 fs~~f~K~Llg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlpg~~~iE 1273 (1470)
|+++|||+++|++++..|+..|||+++++|.+|+.++.+|+.++...|+...+..+|+++||.||||||+||+||+++||
T Consensus 354 ls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ie 433 (621)
T KOG0170|consen 354 LSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIE 433 (621)
T ss_pred ccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCee
Confidence 99999999999999999999999999999999999999999998887888888999999999999999999999999999
Q ss_pred cCCCCc--ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcE
Q 000474 1274 LKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIK 1351 (1470)
Q Consensus 1274 L~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~ 1351 (1470)
|+|||. +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||..++|+.++|++|++
T Consensus 434 L~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~ 513 (621)
T KOG0170|consen 434 LIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIK 513 (621)
T ss_pred eccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcc
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 000474 1352 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDL 1431 (1470)
Q Consensus 1352 ~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~~~~~d~~L 1431 (1470)
+|||||++||+|+.|++||+.|+.+|||.||||||||||||+|||++|+|+||||||+.+. ++++|++|
T Consensus 514 ~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~-----------~~t~Dd~L 582 (621)
T KOG0170|consen 514 ADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAED-----------SETPDDYL 582 (621)
T ss_pred cccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCC-----------CCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876 58899999
Q ss_pred cEEecccCcccCCCCCCHHHHHHHHHHHHHhCCcccccC
Q 000474 1432 PSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470 (1470)
Q Consensus 1432 Psa~TCfn~LkLP~YsS~eiLreKL~~AI~eg~g~F~LS 1470 (1470)
|+||||+||||||+|||+|+||+||.+||+||||+||||
T Consensus 583 PSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 583 PSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred chHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999999999999999999999998
No 2
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-77 Score=750.27 Aligned_cols=433 Identities=30% Similarity=0.440 Sum_probs=361.0
Q ss_pred hHhcccchHHHHHHHHHHHHHhcCCCChhHhhhhccCCcccChhhHHHHHHhhhhchhHHHHHHHHhhcCCCCCCC----
Q 000474 963 EFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSV---- 1038 (1470)
Q Consensus 963 ~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~---- 1038 (1470)
.++......++.++.-+++.+++.+.+.|. ....|+++++++|...++...|...|...-+............
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~r~~~~~~~~~~~h~k~~~~~~~~~~g~~~~~~~~~ 488 (872)
T COG5021 412 STYEDLRREQLGRESDESFYVASNVQQQRA---SREGPLLSGWKTRLNNLYRFYFVEHRKKTLTKNDSRLGSFISLNKLD 488 (872)
T ss_pred hhhhchhhhhhhhhhccchhhhcccccccc---cccccccchHHHHhhhhheeeehhcccceeeecCCCCchhhhhchhH
Confidence 455566677888889899999999999998 6779999999999999999887765533221111100000000
Q ss_pred ------cc-hhh---h--c--ccccccccccChhHHHHHHHHHHhhccC--CCccEEEEEeCccccCc-cchHHHHHHHH
Q 000474 1039 ------NE-REI---R--V--GRLERQKVRVSRNRILDSAAKVMEMYSS--QKAVLEVEYFGEVGTGL-GPTLEFYTLLS 1101 (1470)
Q Consensus 1039 ------~~-~~~---~--~--grl~r~kv~V~R~~IlesA~~~l~~~~~--~k~~LeVeF~gE~G~g~-GptrEFfslvs 1101 (1470)
+. +.+ + . .--+..+|+|+|++|++|++..+...+. .+..|+|+|.||+|+|+ |+|||||.+++
T Consensus 489 ~~r~~~~~r~~l~~~~~~~~~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~~~lLs 568 (872)
T COG5021 489 IRRIKEDKRRKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLLS 568 (872)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCcceEEEEecccchHHHHHHHHHhchhhhcceEEEEecCcccccCCccchHHHHHHh
Confidence 00 000 0 0 0124577999999999999998877663 35679999999999999 69999999999
Q ss_pred HHHhcCCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccc
Q 000474 1102 RDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMA 1181 (1470)
Q Consensus 1102 ~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~va 1181 (1470)
+++++|++++|..... +.| .++|+|.+.. + .+++.+|+|+|++||
T Consensus 569 ~~~Fnp~y~LF~y~t~----------------------d~~-----~~~~n~~s~~-----n---pe~L~yf~fiGrvIG 613 (872)
T COG5021 569 KEMFNPDYGLFEYITE----------------------DLY-----TLPINPLSSI-----N---PEHLSYFKFLGRVIG 613 (872)
T ss_pred HHhcCCcccceeeecc----------------------ccc-----ccCcCccccC-----C---HHHHHHHHHHHHHHH
Confidence 9999999999998755 112 3555555431 1 589999999999999
Q ss_pred eeeecCCcccccCCHHHHHHHhCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCCcccccc
Q 000474 1182 KALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLC 1261 (1470)
Q Consensus 1182 kAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~ 1261 (1470)
+||+|+++||++|+.+|||+||+.+++++|+.++||++|++|.||++. +.+. ..++
T Consensus 614 kaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~-----------------------~~d~-~~l~ 669 (872)
T COG5021 614 KAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNN-----------------------DIDE-TILD 669 (872)
T ss_pred HHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcC-----------------------CCCc-ceee
Confidence 999999999999999999999999999999999999999999999874 1111 1567
Q ss_pred cccccC----C-CCceecCCCCc--ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhh
Q 000474 1262 LDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLL 1334 (1470)
Q Consensus 1262 L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~li 1334 (1470)
|+|++. | ...|||||||+ .||.+|+.+||++|++|+|+++|++|++||..||++|||..+|.+|+++||+.||
T Consensus 670 l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI 749 (872)
T COG5021 670 LTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLI 749 (872)
T ss_pred eeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHH
Confidence 777764 3 45799999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHhhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCC
Q 000474 1335 CGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAP 1414 (1470)
Q Consensus 1335 cG~~e~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~ 1414 (1470)
||.++++|+++|+++|.| |||++++|+|.|||++|++|+.|+|++|||||||++|+|++||+.|+|+.+|++.....
T Consensus 750 ~G~~e~iDidd~K~~T~Y-~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~-- 826 (872)
T COG5021 750 GGIPEDIDIDDWKSNTAY-HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEK-- 826 (872)
T ss_pred CCCCccccHHHHhhcccc-cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeec--
Confidence 999986799999999999 79999999999999999999999999999999999999999999999954444433322
Q ss_pred CCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCCcccccC
Q 000474 1415 NTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470 (1470)
Q Consensus 1415 ~~~~~~~g~~~~~d~~LPsa~TCfn~LkLP~YsS~eiLreKL~~AI~eg~g~F~LS 1470 (1470)
...++++||+||||||+|+||+|+|||+||+||++||+||.| |+|+
T Consensus 827 ---------~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~G-Fg~~ 872 (872)
T COG5021 827 ---------GGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAG-FGLL 872 (872)
T ss_pred ---------CCCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccC-cCcC
Confidence 123688999999999999999999999999999999999997 8874
No 3
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-75 Score=699.26 Aligned_cols=418 Identities=33% Similarity=0.541 Sum_probs=350.4
Q ss_pred CCCChhhHhcccchHHHHHHHHHHHH-HhcCCCChhHhhhhccCCcccChhhHHHHHHhhhhchhHHHHHHHHhhcCCCC
Q 000474 957 VRVPYEEFINSKLTPKLARQIQDALA-LCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGH 1035 (1470)
Q Consensus 957 ~~~~~~~F~~~klt~Kl~rql~~~l~-~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~ 1035 (1470)
..||.+.|++.-|..-++-+.+-..- ........|| +|||||+--+|..++|..+ ++++......+
T Consensus 419 ~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc-----~ypFIL~~~aK~~lL~yD~--------rlrM~~~~~~a 485 (850)
T KOG0941|consen 419 GLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFC-----NYPFILNAVAKIELLQYDA--------RLRMESERRKA 485 (850)
T ss_pred CCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceee-----cCCeecccHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 46888999988888877643332111 1112245677 7999999999999999874 33332211000
Q ss_pred CCCc-chhhhcccccccccccChhHHHHHHHHHHhhcc--CCCccEEEEEeCccccCc-cchHHHHHHHHHHHhcCCCCC
Q 000474 1036 GSVN-EREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAM 1111 (1470)
Q Consensus 1036 ~~~~-~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~--~~k~~LeVeF~gE~G~g~-GptrEFfslvs~El~~~~l~l 1111 (1470)
.-.. ....+-..-++.+++|||++|++||+++|+++. +.+++|+|+|.||+|+|+ |+++|||.+|.+|+++|++||
T Consensus 486 ~~~s~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~Gm 565 (850)
T KOG0941|consen 486 FLSSLFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGM 565 (850)
T ss_pred HHHHHHhhccCCCCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccC
Confidence 0000 000000034688999999999999999999887 469999999999999999 699999999999999999999
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCccc
Q 000474 1112 WRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLD 1191 (1470)
Q Consensus 1112 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ld 1191 (1470)
|.+... ..++ ||+. .+. ....+|.++|++||.|||++.++|
T Consensus 566 F~~~e~----------------------s~~~-----WF~~-~~~-----------~~~~~y~liGil~GLAIyN~~ild 606 (850)
T KOG0941|consen 566 FTYDEE----------------------SSLL-----WFNP-SPF-----------EEEKQYHLIGILCGLAIYNNTILD 606 (850)
T ss_pred eecccc----------------------ccee-----eecC-CCC-----------CccceeeehhHHHHHHHhccceec
Confidence 999866 2333 3321 111 122489999999999999999999
Q ss_pred ccCCHHHHHHHhCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCCcccc-cccccccC---
Q 000474 1192 LPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP--- 1267 (1470)
Q Consensus 1192 l~fs~~f~K~Llg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ied-L~L~Ftlp--- 1267 (1470)
+|||.+|||+|++++++++||.++.|.++++|+.|+++ .|+++|| ++|+|++.
T Consensus 607 lpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y-----------------------~gdd~ed~f~l~F~i~~~~ 663 (850)
T KOG0941|consen 607 LPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDY-----------------------EGDDVEDVFDLTFQISQDD 663 (850)
T ss_pred CCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhc-----------------------cccchhhheeeEEEEEehh
Confidence 99999999999999999999999999999999999985 3334444 88999876
Q ss_pred -C-CCceecCCCCc--ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCH
Q 000474 1268 -G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEP 1343 (1470)
Q Consensus 1268 -g-~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~ 1343 (1470)
| ..+++|+|||. +||.+|++|||++|++|.++..|++|++||++||++|+....+.+|.|+||+.++||+++ +||
T Consensus 664 ~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~-~Dw 742 (850)
T KOG0941|consen 664 NGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSED-YDW 742 (850)
T ss_pred cCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCc-cCH
Confidence 3 24789999999 999999999999999999999999999999999999999999999999999999999987 799
Q ss_pred HHhhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC
Q 000474 1344 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP 1423 (1470)
Q Consensus 1344 e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~ 1423 (1470)
+.|++.++|++||+.+||+|+|||++++.|+.++|++||||+||++|+|++|++.| +|+|.+..+
T Consensus 743 ~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l--~~~i~~~~~------------- 807 (850)
T KOG0941|consen 743 KALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL--KLVIQKNGP------------- 807 (850)
T ss_pred HHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc--eEEEecCCC-------------
Confidence 99999999999999999999999999999999999999999999999999999999 788876432
Q ss_pred CCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCCccccc
Q 000474 1424 SESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1469 (1470)
Q Consensus 1424 ~~~~d~~LPsa~TCfn~LkLP~YsS~eiLreKL~~AI~eg~g~F~L 1469 (1470)
..++||+||||||.|.||+|||+|.|++||++||++..| |.|
T Consensus 808 ---~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~G-F~l 849 (850)
T KOG0941|consen 808 ---DEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEG-FGL 849 (850)
T ss_pred ---CcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccC-cCC
Confidence 368999999999999999999999999999999999999 875
No 4
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=3.1e-74 Score=683.74 Aligned_cols=341 Identities=45% Similarity=0.738 Sum_probs=313.6
Q ss_pred cccccChhHHHHHHHHHHhhcc--CCCccEEEEEeCccccCc-cchHHHHHHHHHHHhcCCCCCcccCCCCCCCCccccC
Q 000474 1051 QKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDG 1127 (1470)
Q Consensus 1051 ~kv~V~R~~IlesA~~~l~~~~--~~k~~LeVeF~gE~G~g~-GptrEFfslvs~El~~~~l~lf~~~~~~~~~~~~~~~ 1127 (1470)
.+++|+|++|++++++++..+. ..+.+|+|+|.||.|+|. ||+||||++|++|+++++++||+.+++.
T Consensus 1 ~~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~--------- 71 (352)
T cd00078 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDD--------- 71 (352)
T ss_pred CeEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC---------
Confidence 3689999999999999998876 567899999999999995 8999999999999999999999987541
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCcccccCCHHHHHHHhCCCC
Q 000474 1128 DEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL 1207 (1470)
Q Consensus 1128 ~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~fs~~f~K~Llg~~l 1207 (1470)
..+++|+|..... ..++++|+++|++||+||+++.+++++||++|||+|+|.++
T Consensus 72 ------------------~~~~~~~p~~~~~--------~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~ 125 (352)
T cd00078 72 ------------------SGLLYPNPSSFAD--------EDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPL 125 (352)
T ss_pred ------------------CceEEeCCCcccc--------hhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCC
Confidence 1367888765421 35789999999999999999999999999999999999999
Q ss_pred CccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCCccccccccccc------CCCCceecCCCCc--
Q 000474 1208 DLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTL------PGYPDYILKPGDE-- 1279 (1470)
Q Consensus 1208 tl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl------pg~~~iEL~pgG~-- 1279 (1470)
+++||+++||+++++|++|+++ +. .+++++|+|++ .+..++||+|||+
T Consensus 126 t~~Dl~~iD~~~~~sl~~l~~~-----------------------~~-~~~~l~l~F~~~~~~~~~~~~~veL~~~G~~~ 181 (352)
T cd00078 126 SLEDLEELDPELYKSLKELLDN-----------------------DG-DEDDLELTFTIELDSSFGGAVTVELKPGGRDI 181 (352)
T ss_pred CHHHHHHhCHHHHHHHHHHHhc-----------------------CC-chhhhcceeEEEEeecCCCcceEecCCCCCCC
Confidence 9999999999999999999874 11 15678889985 3567899999999
Q ss_pred ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcEecCCCCCC
Q 000474 1280 NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAK 1359 (1470)
Q Consensus 1280 ~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~~ 1359 (1470)
+||.+|+++||+++++|+++.+++.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+
T Consensus 182 ~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~-id~~~l~~~~~y~~~~~~~ 260 (352)
T cd00078 182 PVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLEDLKKNTEYKGGYSSD 260 (352)
T ss_pred cCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCC-CCHHHHHhceEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999955 7999999999999999999
Q ss_pred ChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccC
Q 000474 1360 SPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCAN 1439 (1470)
Q Consensus 1360 s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~~~~~d~~LPsa~TCfn 1439 (1470)
++.|+|||+||++|+++||++||+|+||++|||+|||++++|+|+|++... ++++||+||||||
T Consensus 261 ~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~----------------~~~~LP~a~TCf~ 324 (352)
T cd00078 261 SPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGS----------------PDDRLPTAHTCFN 324 (352)
T ss_pred CHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCC----------------CCCCCCcchhhhc
Confidence 999999999999999999999999999999999999999999999997642 5899999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCcccc
Q 000474 1440 YLKLPPYSTKEIMYKKLVYAISEGQGSFD 1468 (1470)
Q Consensus 1440 ~LkLP~YsS~eiLreKL~~AI~eg~g~F~ 1468 (1470)
+|+||.|+|+|+||+||++||++|+| ||
T Consensus 325 ~L~LP~Yss~e~l~~kL~~AI~~~~g-F~ 352 (352)
T cd00078 325 LLKLPPYSSKEILREKLLYAINEGAG-FG 352 (352)
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCC-CC
Confidence 99999999999999999999999996 96
No 5
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-74 Score=692.45 Aligned_cols=386 Identities=33% Similarity=0.558 Sum_probs=342.6
Q ss_pred hhhccCCcccChhhHHHHHHhhhhchhHHHHHHHHhhcCCCCCCCcchhhhcccccccccccChhHHHHHHHHHHhhcc-
Q 000474 994 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS- 1072 (1470)
Q Consensus 994 ~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~- 1072 (1470)
.+++++||+.||+.|+.+||. .|..=++..+.++ . .|+.....++|||++|++||+..|...+
T Consensus 599 ~IL~e~PF~vPF~~RVklfq~-------lla~dKq~~~~~~-------~--F~~g~s~~~tIRRd~iyeDAfd~f~p~~e 662 (1001)
T KOG0942|consen 599 CILKEIPFFVPFEERVKLFQR-------LLALDKQRHGGDG-------P--FGMGFSPSATIRRDHIYEDAFDAFSPKGE 662 (1001)
T ss_pred HHHHcCCeeechHHHHHHHHH-------HHHHHHHhhcCCC-------C--ccCCCCccEEEehhhhHHHHHHhcCccCC
Confidence 478899999999999999985 2222122111111 1 2333336799999999999999998776
Q ss_pred -CCCccEEEEEeCc-----cccCc-cchHHHHHHHHHHHhcCCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCcccc
Q 000474 1073 -SQKAVLEVEYFGE-----VGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHA 1145 (1470)
Q Consensus 1073 -~~k~~LeVeF~gE-----~G~g~-GptrEFfslvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~ 1145 (1470)
+.++.+.|+|++| .|+|. |.+|||.+.++++-+++++|+|+.+..
T Consensus 663 ~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~---------------------------- 714 (1001)
T KOG0942|consen 663 PDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED---------------------------- 714 (1001)
T ss_pred cccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc----------------------------
Confidence 4578899999874 56655 799999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCcccccCCHHHHHHHhCCC--CCccchhhcCHHHHHHH
Q 000474 1146 PLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHE--LDLHDIIPFDAEFGKIL 1223 (1470)
Q Consensus 1146 ~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~fs~~f~K~Llg~~--ltl~DL~~vDp~l~ksL 1223 (1470)
+-|||+|-.+..- + ...+++|+|||+++|||||.|.++|+||+.+|.++++|.. +.++||.++||++|+.|
T Consensus 715 -~lLYPNp~~~~l~--~----~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nL 787 (1001)
T KOG0942|consen 715 -HLLYPNPTAAMLL--D----VDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNL 787 (1001)
T ss_pred -ceecCCCCchhhh--h----hHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHH
Confidence 2589998766421 1 3579999999999999999999999999999999999976 49999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccCccchhhcccccCCcccccccccccC----C-CCceecCCCCc--ccCcCcHHHHHHHHHHH
Q 000474 1224 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDA 1296 (1470)
Q Consensus 1224 ~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~eYV~lv~~~ 1296 (1470)
..|+++ +|.++++|.|+||+- | ...+||+|||+ +||.+|+.+||++|++|
T Consensus 788 ifLk~y-----------------------~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY 844 (1001)
T KOG0942|consen 788 IFLKNY-----------------------NGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNY 844 (1001)
T ss_pred HHHHhc-----------------------CCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhhh
Confidence 999985 566899999999985 3 36789999999 99999999999999999
Q ss_pred HhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcEecCCCCCCChHHHHHHHHHhcCCHH
Q 000474 1297 TVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPD 1376 (1470)
Q Consensus 1297 ~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~e 1376 (1470)
+|+..|++|+.|||.||..|||.+||.||++.||+.||+|.++.+|+++|+++|+|-+||+.++|+|.+||+||++|+.|
T Consensus 845 ~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~e 924 (1001)
T KOG0942|consen 845 KLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDE 924 (1001)
T ss_pred HHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHH
Q 000474 1377 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1456 (1470)
Q Consensus 1377 err~FLqFvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~~~~~d~~LPsa~TCfn~LkLP~YsS~eiLreKL 1456 (1470)
+||+||+|||||+|.|+.|||.|.|+|+|...+ ..+++||+|.||.|.||||+|+++++||+||
T Consensus 925 dKr~fLKFVTscsRpPllGFK~L~P~FcI~n~g----------------sd~~RLPTASTCmNLLKLP~y~~kt~LreKL 988 (1001)
T KOG0942|consen 925 DKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAG----------------SDDDRLPTASTCMNLLKLPPYSNKTLLREKL 988 (1001)
T ss_pred HHHHHHHHHhcCCCcccccchhcCccceeeeCC----------------CccccCCcHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999998643 2689999999999999999999999999999
Q ss_pred HHHHHhCCcccccC
Q 000474 1457 VYAISEGQGSFDLS 1470 (1470)
Q Consensus 1457 ~~AI~eg~g~F~LS 1470 (1470)
+|||+.|.| |+||
T Consensus 989 lYAI~sgAG-FeLS 1001 (1001)
T KOG0942|consen 989 LYAINSGAG-FELS 1001 (1001)
T ss_pred HHHHhcccC-CCCC
Confidence 999999999 9998
No 6
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=2.3e-72 Score=661.39 Aligned_cols=320 Identities=43% Similarity=0.695 Sum_probs=291.0
Q ss_pred CCcc-EEEEEeCccccCc-cchHHHHHHHHHHHhcCCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCC
Q 000474 1074 QKAV-LEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1151 (1470)
Q Consensus 1074 ~k~~-LeVeF~gE~G~g~-GptrEFfslvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~GLfP 1151 (1470)
.+++ |+|+|.||.|+|. ||+||||+++++|+++++++||+.++++ .++||
T Consensus 7 ~~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~----------------------------~~~~~ 58 (336)
T smart00119 7 LKKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPND----------------------------YLLYP 58 (336)
T ss_pred hCCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCC----------------------------CeEEe
Confidence 3445 9999999999876 7999999999999999999999987541 26888
Q ss_pred CCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCcccccCCHHHHHHHhCCCCCccchhhcCHHHHHHHHHHHHHHh
Q 000474 1152 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1231 (1470)
Q Consensus 1152 ~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~vDp~l~ksL~~L~~~~~ 1231 (1470)
+|..... ...++++|+++|++||+||+++.+++++||++|||+|+|.+++++||+++||+++++|++|+..
T Consensus 59 ~p~~~~~-------~~~~l~~f~~~G~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~-- 129 (336)
T smart00119 59 NPRAFFA-------NPEHLAYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLN-- 129 (336)
T ss_pred CCCcccc-------chHHHHHHHHHHHHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHh--
Confidence 8754321 0357899999999999999999999999999999999999999999999999999999998521
Q ss_pred hhhhhhhcccCccchhhcccccCCcccccccccc------cCCCCceecCCCCc--ccCcCcHHHHHHHHHHHHhhhcHH
Q 000474 1232 RKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFT------LPGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIM 1303 (1470)
Q Consensus 1232 ~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ft------lpg~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~ 1303 (1470)
++..++++|+|+ .++..++||+|||+ .||.+|+++||+++++|+|..+++
T Consensus 130 ----------------------~~~~~~~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~ 187 (336)
T smart00119 130 ----------------------NDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIE 187 (336)
T ss_pred ----------------------CCCcccccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhHH
Confidence 011234778887 34567899999999 999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhh
Q 000474 1304 RQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQ 1383 (1470)
Q Consensus 1304 ~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLq 1383 (1470)
.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+++.|+|||+||++|+++||++||+
T Consensus 188 ~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~ 266 (336)
T smart00119 188 KQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQ 266 (336)
T ss_pred HHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhhe
Confidence 999999999999999999999999999999999986 7999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhC
Q 000474 1384 FVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1463 (1470)
Q Consensus 1384 FvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~~~~~d~~LPsa~TCfn~LkLP~YsS~eiLreKL~~AI~eg 1463 (1470)
|+||++|+|+|||+.++|+|+|+++.. ++++||+||||||+|+||+|+|+|+||+||++||++|
T Consensus 267 F~TG~~rlP~~G~~~l~~~~~i~~~~~----------------~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~ 330 (336)
T smart00119 267 FVTGSSRLPVGGFAALSPKFTIRKAGS----------------DDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINEG 330 (336)
T ss_pred eccCCCCCCCCchhhcCCceEEEECCC----------------CCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999997642 5799999999999999999999999999999999999
Q ss_pred CcccccC
Q 000474 1464 QGSFDLS 1470 (1470)
Q Consensus 1464 ~g~F~LS 1470 (1470)
+| |+||
T Consensus 331 ~g-F~l~ 336 (336)
T smart00119 331 KG-FGLS 336 (336)
T ss_pred CC-CCCC
Confidence 88 9997
No 7
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-65 Score=602.36 Aligned_cols=396 Identities=29% Similarity=0.504 Sum_probs=340.4
Q ss_pred hhccCCcccChhhHHHHHHhhhhchhHHHHHHHHhh---cCCCCCCCcchhhhcccccc-cccccChhHHHHHHHHHHhh
Q 000474 995 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQ---GADGHGSVNEREIRVGRLER-QKVRVSRNRILDSAAKVMEM 1070 (1470)
Q Consensus 995 l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~---~~~~~~~~~~~~~~~grl~r-~kv~V~R~~IlesA~~~l~~ 1070 (1470)
|++..|.+||+|.|+++|+. ..|... +.-+.... ..++ ..|.|+|++|+||.++++..
T Consensus 670 ll~~mpHviP~edRv~lFR~----------fVqkdKa~~~lv~ts~a--------~p~~~t~IvvrR~rivEDGf~qL~~ 731 (1096)
T KOG4427|consen 670 LLTKMPHVIPHEDRVLLFRE----------FVQKDKASRGLVETSDA--------SPARSTEIVVRRGRIVEDGFQQLNS 731 (1096)
T ss_pred EeccCCcccChHHHHHHHHH----------HHhhhHHhhcccccccC--------CccceeEEEEEcccchhhHHHHHHh
Confidence 56679999999999999984 233322 11111110 1112 45899999999999999998
Q ss_pred ccC--CCccEEEEEeCcc-----ccCc-cchHHHHHHHHHHHhcCCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCc
Q 000474 1071 YSS--QKAVLEVEYFGEV-----GTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDL 1142 (1470)
Q Consensus 1071 ~~~--~k~~LeVeF~gE~-----G~g~-GptrEFfslvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 1142 (1470)
.+. .|+.+.|.|++|. |+|. |+.+||...+.+..++|.++||..++. +
T Consensus 732 l~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~-d----------------------- 787 (1096)
T KOG4427|consen 732 LGSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTST-D----------------------- 787 (1096)
T ss_pred ccchhhhceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCC-C-----------------------
Confidence 875 5999999999865 5566 899999999999999999999988753 1
Q ss_pred cccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCcccccCCHHHHHHHhCCCC--CccchhhcCHHHH
Q 000474 1143 VHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFG 1220 (1470)
Q Consensus 1143 v~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~fs~~f~K~Llg~~l--tl~DL~~vDp~l~ 1220 (1470)
.-|||.|.+... +.++++|+|+||++|||+|.|+++|+||+++|...++|..- .++.|..+||++|
T Consensus 788 ----~~LyPSPts~~~--------en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElY 855 (1096)
T KOG4427|consen 788 ----RRLYPSPTSYHH--------ENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELY 855 (1096)
T ss_pred ----ceecCCchhhhh--------hchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHH
Confidence 148999876542 57899999999999999999999999999999999999764 7889999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcccCccchhhcccccCCcccccccccccC----C-CCceecCCCCc--ccCcCcHHHHHHHH
Q 000474 1221 KILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLV 1293 (1470)
Q Consensus 1221 ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~eYV~lv 1293 (1470)
++|..++.+ +| ++.||||+|++. | ...+||+|||+ .||++|+-.||..+
T Consensus 856 rnLtfvKhY-----------------------dg-d~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~M 911 (1096)
T KOG4427|consen 856 RNLTFVKHY-----------------------DG-DLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAM 911 (1096)
T ss_pred hhhhHHHhh-----------------------cc-cHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHH
Confidence 999998875 33 578999999986 4 36899999999 99999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcEecCCCCCCChHHHHHHHHHhc-
Q 000474 1294 VDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGE- 1372 (1470)
Q Consensus 1294 ~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~e- 1372 (1470)
++|+++.+|++|..||-+||.+++...||++|+|.||+.||.|...++|+++|++|++|.+||..+|++|+|||+||..
T Consensus 912 A~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~d 991 (1096)
T KOG4427|consen 912 AHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGD 991 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999988889999999999999999999999999999985
Q ss_pred CCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC---------CCCCCCCCcEEecccCcccC
Q 000474 1373 FTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP---------SESADDDLPSVMTCANYLKL 1443 (1470)
Q Consensus 1373 fs~eerr~FLqFvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~---------~~~~d~~LPsa~TCfn~LkL 1443 (1470)
|++|||+.||+|||.|+|.|+-||+.|.|+|.|.+..-..+ ...+...|. ...+-.+||+|+||||.|||
T Consensus 992 Ft~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdD-qd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKL 1070 (1096)
T KOG4427|consen 992 FTPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDD-QDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKL 1070 (1096)
T ss_pred CChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCc-ccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhC
Confidence 99999999999999999999999999999999875422211 111122221 13477899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcccccC
Q 000474 1444 PPYSTKEIMYKKLVYAISEGQGSFDLS 1470 (1470)
Q Consensus 1444 P~YsS~eiLreKL~~AI~eg~g~F~LS 1470 (1470)
|.|+-+.+|||||+|||..+.| |+||
T Consensus 1071 PnY~kkStlreKLrYAIssntG-FELS 1096 (1096)
T KOG4427|consen 1071 PNYKKKSTLREKLRYAISSNTG-FELS 1096 (1096)
T ss_pred CCcchhHHHHHHHHHHhhcCCC-cccC
Confidence 9999999999999999999999 9998
No 8
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=5e-66 Score=612.53 Aligned_cols=381 Identities=32% Similarity=0.533 Sum_probs=330.9
Q ss_pred HHHHHhcCCCChhHhhhhccCCcccChhhHHHHHHhhhhchhHHHHHHHHhhcCCCCCCCcchhhhcccccccccccChh
Q 000474 979 DALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRN 1058 (1470)
Q Consensus 979 ~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~ 1058 (1470)
+|-+++.| ..+...+|-|..|+.++.||+.. +.+... . -....|.|+|+
T Consensus 323 ~~~~L~~~------f~ll~~~~~ll~F~~Kr~yf~r~-------L~~~~~----~--------------~~~~~v~v~R~ 371 (720)
T KOG0939|consen 323 NPNILAAG------FSLLLKNPMLLDFDNKRKYFKRE-------LRKEHA----S--------------SEKLAVLVRRA 371 (720)
T ss_pred Cchhhhcc------hhhheecCcceecccHHHHHHHH-------HHHhhc----c--------------CCcceEEEeHH
Confidence 44556665 45778899999999999999842 222111 0 01345889999
Q ss_pred HHHHHHHHHHhhcc--CCCccEEEEEeCccccCcc-chHHHHHHHHHHHhcCCCCCcccCCCCCCCCccccCCCCCCCCC
Q 000474 1059 RILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGLG-PTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1135 (1470)
Q Consensus 1059 ~IlesA~~~l~~~~--~~k~~LeVeF~gE~G~g~G-ptrEFfslvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~ 1135 (1470)
.+|++.++++.... ..+..|+|.|.||+|.|+| ++||||.++++|+++|++.||..... +..
T Consensus 372 ~v~~~S~~~~~~~s~~e~~~rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~-d~t-------------- 436 (720)
T KOG0939|consen 372 LVLEDSFRALLYKSPEELKTRLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGS-DQT-------------- 436 (720)
T ss_pred HHHHHHHHHHHhCCHHHHhcceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCC-Cce--------------
Confidence 99999999876554 4577999999999999995 99999999999999999999988754 100
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCcccccCCHHHHHHHhCCCCCccchhhc
Q 000474 1136 SNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPF 1215 (1470)
Q Consensus 1136 ~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~v 1215 (1470)
.+.|+|.+.- ...++.+|+|.||++||||+||+.++..|.+.|||+++|.++++.|++..
T Consensus 437 ------------t~~pn~~s~~--------np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~ 496 (720)
T KOG0939|consen 437 ------------TFHPNPNSYV--------NPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESA 496 (720)
T ss_pred ------------EEeeCCcccC--------ChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhc
Confidence 2345554221 15799999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCCcccc-cccccccC----C-CCceecCCCCc--ccCcCcHH
Q 000474 1216 DAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLE 1287 (1470)
Q Consensus 1216 Dp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ied-L~L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~ 1287 (1470)
||++|++|.||++- ++.+ |.++|... | ...+||+|||+ .||.+|+.
T Consensus 497 DP~y~k~l~~il~n--------------------------dis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~ 550 (720)
T KOG0939|consen 497 DPEYYKSLVWILKN--------------------------DISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQ 550 (720)
T ss_pred ChHHhhceeehhcC--------------------------CcccceeEEEEEeeccccccceeecccCCCceeeccccHH
Confidence 99999999998761 1222 56666654 3 36899999999 99999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcEecCCCCCCChHHHHHH
Q 000474 1288 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLL 1367 (1470)
Q Consensus 1288 eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~~s~~I~~Fw 1367 (1470)
+||+++++++|..+|++|++||.+||++++|...+++|++.||+.|+||.+++ ++++|+.+++| +||+..+++|+|||
T Consensus 551 ~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpei-dvdd~k~nt~y-~~~~~~~~~i~wFW 628 (720)
T KOG0939|consen 551 EYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEI-DVDDLKANTEY-LGYTKASSVIQWFW 628 (720)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcc-cHHHHHhhhhh-hcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 99999999999 79999999999999
Q ss_pred HHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCccc
Q 000474 1368 EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLK 1442 (1470)
Q Consensus 1368 evl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p-----~ltIvrk~~~~~~~~~~~~~g~~~~~d~~LPsa~TCfn~Lk 1442 (1470)
++|.+|+++||.+|||||||++++|++||+.|.+ +|+|.+.+. ..+.||++|||||+|+
T Consensus 629 rav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~----------------s~d~LP~ahTCfnqL~ 692 (720)
T KOG0939|consen 629 RAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPG----------------STDRLPTAHTCFNQLF 692 (720)
T ss_pred HHHhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCC----------------CCCCCcchhhhhhhhc
Confidence 9999999999999999999999999999999997 899987542 4589999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCccccc
Q 000474 1443 LPPYSTKEIMYKKLVYAISEGQGSFDL 1469 (1470)
Q Consensus 1443 LP~YsS~eiLreKL~~AI~eg~g~F~L 1469 (1470)
||.|.|+|.++++|+.||+||..+|++
T Consensus 693 LP~Y~Sye~l~~~LllAi~E~segfg~ 719 (720)
T KOG0939|consen 693 LPHYASYEQLRESLLLAINEGSEGFGM 719 (720)
T ss_pred CcchhhHHHHHHHHHHHHHhhhhccCc
Confidence 999999999999999999999988986
No 9
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-63 Score=591.62 Aligned_cols=580 Identities=38% Similarity=0.445 Sum_probs=392.5
Q ss_pred CccHHHHHHHHhcCCHHHHHHHHHcCchHHHHHHhcCCCCCCCCCCcccCCCChhhHHHHHHHHHHhCCCCCCC-CccCC
Q 000474 1 MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQG-TISLP 79 (1470)
Q Consensus 1 ~t~llR~L~~~a~~sp~ls~~LLk~~I~~tL~~iLtG~~~~~~~~~~~~~~Rp~eqv~E~l~LI~eLLP~lP~~-~~~~~ 79 (1470)
||++||||+.||++||.++.+|+|.||++||++||+|++.+++.++.+++.|.+++++|.++||+||||++|.+ +|.+.
T Consensus 401 ~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~ 480 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVD 480 (1051)
T ss_pred hhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehh
Confidence 79999999999999999999999999999999999999999888888999999999999999999999999994 54331
Q ss_pred ---CCC--------cccc---cCC------------cccCCCCCCCCCCCCCCCCccchhhhHhhhccChHHHHHHHHHH
Q 000474 80 ---SSS--------NMFV---KGP------------VVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDL 133 (1470)
Q Consensus 80 ---~~~--------~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~R~ell~~~pe~l~~F~~~L 133 (1470)
.|. .|+. +|. -+..+....++++. .+...++|+.+|+++||++++|++.|
T Consensus 481 ~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~----dkl~~~~r~~~l~nqpel~q~F~~~l 556 (1051)
T KOG0168|consen 481 CSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQ----DKLNGSAREGLLKNQPELLQSFGKDL 556 (1051)
T ss_pred hhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhh----hhcCCchhhhhhhcCHHHHHHHHHHH
Confidence 110 0111 111 01111111111111 12335899999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhh
Q 000474 134 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFS 213 (1470)
Q Consensus 134 lPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~ 213 (1470)
||+|||||+|++|+.||||||+||+|||||+++++|+++|++.+++|||||||+++|+++|++|||+|||||+|+||+|.
T Consensus 557 lpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~ 636 (1051)
T KOG0168|consen 557 LPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFS 636 (1051)
T ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCc
Q 000474 214 KMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVE 293 (1470)
Q Consensus 214 ~~F~REGV~~~I~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~d~~~~d~~~~~~s~~~~s~~s~~~ 293 (1470)
++|+||||||+|++|+.........+ ++++. ...+.....+.++++-.+-+++..++...+. ...+.
T Consensus 637 ~~F~REGV~~~v~~L~~~~~~~~~~p-----dk~~n-~~gS~~s~~~~~~ss~~~~~~~~see~~~ps-------lt~~~ 703 (1051)
T KOG0168|consen 637 PSFRREGVFHAVKQLSVDSNPIDANP-----DKANN-ENGSADSEEGDSSSSITECDEHQSEELGYPS-------LTHSE 703 (1051)
T ss_pred hhHhhhhHHHHHHHHhccCCccccCC-----CcccC-CCCccccCCCccccccccccccchhccCCcc-------ccccc
Confidence 99999999999999998543322111 11111 0011111111121111111110011110010 11111
Q ss_pred cCCCCch-------hhhHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHhhccchhhhhcccCccccCCcccc
Q 000474 294 IPTVNSN-------LRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSRLAD 366 (1470)
Q Consensus 294 ~p~~~~~-------~r~~v~~~Ak~~~~~~f~~~~~~~~~~~~~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~d 366 (1470)
.|....+ +|..+..+||.|..+||+... ..+.++.+..+++|+..+..+....+.+..++
T Consensus 704 ~~~s~~~pk~s~~l~R~~~~~~ak~~~p~~~p~~~---~~~~~d~~~~~knl~s~~s~~l~~~np~~~gk---------- 770 (1051)
T KOG0168|consen 704 QPDSVKPPKISDHLLRTRSPKRAKNFGPKYFPSRL---DQGVTDQLANLKNLHSILSSFLASLNPATWGK---------- 770 (1051)
T ss_pred CCCccCCchhHHHHHHhhhhhhhhccCCCCCCchh---hhhhhHhhhhhhhhcchhhhhhcccCCCCCCc----------
Confidence 2221122 234455667788888998733 45778899999999988776554433322222
Q ss_pred cchhhHHH--HHHHHHHHHHhccCCCcccceeccccchHHHHHHhhccCccch--hhhhhHHHHHHHHHHHHHHhHhhcc
Q 000474 367 ISATKEEY--LIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKER--MSEANMLKLRQQALKRFKSFIAVAL 442 (1470)
Q Consensus 367 ~~~~~ee~--~~~~l~~l~~~l~~~~~VSsFEl~~SGLV~sLl~~Ls~~~~~~--~~~~~~~~~r~~~l~~f~~F~~~~~ 442 (1470)
.+++ |.++|..+...+++++.||+|||.++|++++|.+|++++.|.+ .........+++.++.|++|.+++.
T Consensus 771 ----~e~~~f~g~~~s~~~~~l~g~~~vS~~~l~~~~~~~sisnr~s~~~~sre~~~k~~~~~~e~e~~r~l~vl~~v~t 846 (1051)
T KOG0168|consen 771 ----TEEQPFWGNIWSVLKERLAGDFDVSGFELTEAGVADSISNRESSGTWSREQAAKLVLRYFEQEILRFLNVLQEVLT 846 (1051)
T ss_pred ----ccccccccchhhhhhhhhcCCcccchhhhhHHHHHHHHHhhhhcchhhHHHHHHHhhcchhhhHHHHHHHHHHHHH
Confidence 2333 8899999999999999999999999999999999999988553 1111112233444444455554443
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhhccccceEeccCCCCCCCCCCCCcccccccC-ceeEE-EEecCCCCccCCCCCCeE
Q 000474 443 PNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQ-PFKLR-LCRAQGDKSLRDYSSNVV 520 (1470)
Q Consensus 443 ~~~~~~~~~~pls~LV~KLq~aLsr~E~FpV~~~~~~~~~~~~~~~~sg~s~Lak-qlklr-L~~~~d~~~l~~~s~~~V 520 (1470)
.-..+.+...+...+++|||++|+.+|+||+++.|....-++....++|...++. .+|+| +-......-+.+|.-..|
T Consensus 847 ~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~~~kn~~~~lsSg~t~~s~~~i~~~~fl~~f~~~ple~~~~~~~ 926 (1051)
T KOG0168|consen 847 RLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSGSKKNILAYLSSGETILSVPCIRLRTFLHVFLRLPLEPMLQPNV 926 (1051)
T ss_pred HHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCchhhhhhhhhcccCcchhhhHHHHHHHHHHHHhcCCchhhccccc
Confidence 2222334667899999999999999999999999865543445566777666643 44444 222233445778889999
Q ss_pred EEeeccChHHHHHhhhhhhccccCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCC
Q 000474 521 LIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKKEPS 600 (1470)
Q Consensus 521 sIhpiATf~aLedyL~pRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1470)
.|.|++...+..+|.|+.+........+ .-.. .. +..+++|++.++.+--+....+..-+.
T Consensus 927 ~v~~l~~~~~~a~~~~~~~cl~~m~~~~---~k~~---d~-------------p~~~~~r~~~~s~~~~n~~dlk~~~~~ 987 (1051)
T KOG0168|consen 927 QVPPLTSSPAEADVEKENNCLDQMEQVP---VKVH---DF-------------PAGTGGRGSQFSTSFFNTHDLKCLLQR 987 (1051)
T ss_pred cCCCccccchhhhhhcccCCcchhhcCC---Cccc---cc-------------cCcCCcccchhhhheeecccccCcccc
Confidence 9999999999999999988863321111 0000 01 111222333332222222233333344
Q ss_pred cccCCCCcCCCcchhhchhhhhcCCcchhhHHH
Q 000474 601 QEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAAR 633 (1470)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1470)
+....+..+.||..+.-....+..|+..|...|
T Consensus 988 h~~~~~~kq~kG~~~~iep~~~~~g~q~~~~~~ 1020 (1051)
T KOG0168|consen 988 HPTCKNCKQLKGGNVKIEPAAEVQGIQRRSVVR 1020 (1051)
T ss_pred CccccchhhhcCCCcccChhhhchhhHHHHHHh
Confidence 445556666666445555555557766665554
No 10
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=6.9e-61 Score=562.72 Aligned_cols=307 Identities=40% Similarity=0.699 Sum_probs=247.2
Q ss_pred HHHHHHHhcCCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCC-CCCCccCCCchhHHHHHHHc
Q 000474 1098 TLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPP-SADASEGGQFSKVIEYFRLL 1176 (1470)
Q Consensus 1098 slvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~-~~~~s~~~~~~~~l~~F~fL 1176 (1470)
++|++|+++|+++||..+++ ..+ ++|+|... ..... ......+++|+++
T Consensus 1 ~l~~~el~~~~~~lF~~~~~----------------------~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~l 50 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSN----------------------NGL------FWPNPNSNRDSPSP--ASSEEHLKMFRFL 50 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTT----------------------TCE------EEEECCH----TTG--GGSTTHHHHHHHH
T ss_pred CHHHHHhcCccCCCceEcCC----------------------CCE------EeCCCccccccccc--ccCHHHHHHHHHH
Confidence 58999999999999966644 111 22332210 00000 0013678999999
Q ss_pred ccccceeeecCCcccccCCHHHHHHHh-CCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCC
Q 000474 1177 GRVMAKALQDGRLLDLPFSTAFYKLVL-GHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGA 1255 (1470)
Q Consensus 1177 G~~vakAl~d~~~ldl~fs~~f~K~Ll-g~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~ 1255 (1470)
|++||+||+++.+++++|+++|||+|+ |.+++++||..+||+++++|++|+++.. +..
T Consensus 51 G~lig~ai~~~~~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~---------------------~~~ 109 (317)
T PF00632_consen 51 GRLIGKAIRNGIPLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDN---------------------DEE 109 (317)
T ss_dssp HHHHHHHHHTTS-ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHHSHS---------------------GSC
T ss_pred HHHHHHHHHcCCccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhheeccc---------------------ccc
Confidence 999999999999999999999999999 9999999999999999999999987411 122
Q ss_pred cccccccccccCCC------CceecCCCCc--ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCH
Q 000474 1256 PIEDLCLDFTLPGY------PDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTP 1327 (1470)
Q Consensus 1256 ~iedL~L~Ftlpg~------~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp 1327 (1470)
.+++++|+|+++.. .++||++||. .||.+|+++||+++++++++++++.|+++||+||.+|+|...|++|+|
T Consensus 110 ~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~ 189 (317)
T PF00632_consen 110 DVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSP 189 (317)
T ss_dssp TTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSH
T ss_pred ceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCH
Confidence 46789999998732 3689999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCHHHhhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEe
Q 000474 1328 HELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1407 (1470)
Q Consensus 1328 ~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~ltIvr 1407 (1470)
+||+.++||.++.||+++|+++++|++||+.+++.|+|||+||++|+++||++||+|+||++|||+|||+.|+|+|+|++
T Consensus 190 ~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~ 269 (317)
T PF00632_consen 190 EELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQF 269 (317)
T ss_dssp HHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEEE
T ss_pred HHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEee
Confidence 99999999988757999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCCcccccC
Q 000474 1408 KHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470 (1470)
Q Consensus 1408 k~~~~~~~~~~~~~g~~~~~d~~LPsa~TCfn~LkLP~YsS~eiLreKL~~AI~eg~g~F~LS 1470 (1470)
.... ++++||+||||||+|+||.|+|+|+||+||++||++|+++|+||
T Consensus 270 ~~~~---------------~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~gF~~s 317 (317)
T PF00632_consen 270 SDDS---------------PDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQEGFGLS 317 (317)
T ss_dssp ESC----------------STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT-------
T ss_pred cCCC---------------ccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCCCcCcC
Confidence 7532 36899999999999999999999999999999999996669998
No 11
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-40 Score=380.29 Aligned_cols=329 Identities=28% Similarity=0.425 Sum_probs=287.2
Q ss_pred cccccccChhHHHHHHHHHHhhcc--CCCccEEEEEeCccccCc-cchHHHHHHHHHHHhcCCCCCcccCCCCCCCCccc
Q 000474 1049 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1125 (1470)
Q Consensus 1049 ~r~kv~V~R~~IlesA~~~l~~~~--~~k~~LeVeF~gE~G~g~-GptrEFfslvs~El~~~~l~lf~~~~~~~~~~~~~ 1125 (1470)
+..+++|+|+++||++++.+...+ +.+..+-+.|.+|+|.+. |+-||||.++++|.++|.+++|..... + .+.+
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~-~-~tlq- 91 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRK-D-YTLW- 91 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccccccccCCCCcceeeeeccccCCcceeeeeeccc-c-cccc-
Confidence 467899999999999987765544 458889999999999877 789999999999999999999988754 1 2222
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCcccccCCHHHHHHHhCC
Q 000474 1126 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1205 (1470)
Q Consensus 1126 ~~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~fs~~f~K~Llg~ 1205 (1470)
.+|... . ...++.+|+|+|+++|+|+++++.++-- -..|||.|+++
T Consensus 92 -------------------------~~P~sg---~-----~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~k 137 (358)
T KOG0940|consen 92 -------------------------LNPRSG---V-----NPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKK 137 (358)
T ss_pred -------------------------cCCccC---C-----CCCcccccccccccccccceeeEecCCC-ceehhhhhhcC
Confidence 233222 0 1358899999999999999999999987 99999999999
Q ss_pred CCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCCcccccccccccC----C-CCceecCCCCc-
Q 000474 1206 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE- 1279 (1470)
Q Consensus 1206 ~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~iEL~pgG~- 1279 (1470)
+++++|.+.+|+++++++.+++.. ++.. |++|.++ | ....+|+|+|.
T Consensus 138 tt~ldd~e~~d~e~~~s~~~~~en--------------------------~~~~-~~~f~~~~~~~g~~~~~~l~p~g~~ 190 (358)
T KOG0940|consen 138 TTTLDDREAVDPEFYNSLTWIREN--------------------------DPTN-DLTFSVESEVLGQITTQELKPNGAN 190 (358)
T ss_pred ccccCchhhcCccccccccccccC--------------------------Cccc-chhhhcchhhcCCccceeecCCCcc
Confidence 999999999999999999987651 1112 6777765 3 35789999999
Q ss_pred -ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcEecCCCCC
Q 000474 1280 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1358 (1470)
Q Consensus 1280 -~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~ 1358 (1470)
.||.+|+++||.++++ ++..++..|..+|..||..+.|...+++|.+.|++.++||..++ ++++|+.++.|. ||..
T Consensus 191 ~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~-~~~d~~~~t~~~-~~~~ 267 (358)
T KOG0940|consen 191 IQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEI-DVNDWKQNTEYR-GYSE 267 (358)
T ss_pred cccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCccc-chhHHhhhcccc-cccC
Confidence 9999999999999999 88899999999999999999999999999999999999999886 999999999997 8999
Q ss_pred CChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCcE
Q 000474 1359 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1433 (1470)
Q Consensus 1359 ~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p-----~ltIvrk~~~~~~~~~~~~~g~~~~~d~~LPs 1433 (1470)
++++|.|||+++.+|++++|.+.|+|+||++++|.+||+.|.- +++|-.. ...+.||.
T Consensus 268 ~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~~-----------------~~~~~~p~ 330 (358)
T KOG0940|consen 268 TDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEKW-----------------GKSTQLPR 330 (358)
T ss_pred CccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecCc-----------------ccccccch
Confidence 9999999999999999999999999999999999999998864 4565431 15689999
Q ss_pred EecccCcccCCCCCCHHHHHHHHHHHHH
Q 000474 1434 VMTCANYLKLPPYSTKEIMYKKLVYAIS 1461 (1470)
Q Consensus 1434 a~TCfn~LkLP~YsS~eiLreKL~~AI~ 1461 (1470)
+|||||.|.||.|.+++.|++||..||+
T Consensus 331 ~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 331 SHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred hcccccccccccccchhHHHHHHHHhcC
Confidence 9999999999999999999999999984
No 12
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=370.64 Aligned_cols=258 Identities=25% Similarity=0.395 Sum_probs=216.9
Q ss_pred hhHHHHHHHcccccceeeecCCcccccCCHHHHHHHhCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccch
Q 000474 1167 SKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEE 1246 (1470)
Q Consensus 1167 ~~~l~~F~fLG~~vakAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~ 1246 (1470)
+..+..|+-+||++|.||..|-+.++.|++.+||+|||.++.|.|+..+||.++++|+.|.... +..+.+
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAh---------psSd~D- 2808 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAH---------PSSDAD- 2808 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcC---------Cccccc-
Confidence 5679999999999999999999999999999999999999999999999999999999887631 111100
Q ss_pred hhcccccCCccccccccccc-----CCCCceecCCCCc--ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhccccccc
Q 000474 1247 VVDLRFRGAPIEDLCLDFTL-----PGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDI 1319 (1470)
Q Consensus 1247 ~~~l~~~~~~iedL~L~Ftl-----pg~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~ 1319 (1470)
..+..+.+.|.. .|...++|||||. +||.+|+-|||.+|++++|.......++|+|+|+.+|+|.
T Consensus 2809 --------adFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPe 2880 (3015)
T KOG0943|consen 2809 --------ADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPE 2880 (3015)
T ss_pred --------chhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcch
Confidence 011112222221 2556899999998 9999999999999999999887777899999999999999
Q ss_pred ccccCCCHHHHHhhhcCCCCCCCHHHhhhhcEecCCCCCCC--------hHHHHHHHHHhcCCHHHHHHhhhhhcCCCCC
Q 000474 1320 TSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKS--------PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRL 1391 (1470)
Q Consensus 1320 ~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~~~~Gyt~~s--------~~I~~Fwevl~efs~eerr~FLqFvTGs~rL 1391 (1470)
..|--++++++..+|||..++ ++..|.+.+-| ..+| +.-+|||+|++.|+..||+.++.||||||.|
T Consensus 2881 nmL~~LT~EDfRLiicG~eeV-niqmL~e~TgF----lDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaL 2955 (3015)
T KOG0943|consen 2881 NMLEDLTAEDFRLIICGCEEV-NIQMLIEFTGF----LDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPAL 2955 (3015)
T ss_pred hhhcccCHhHheeeeecccce-ehhHhhhhccc----cccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCC
Confidence 999999999999999999886 99999988754 4444 3568999999999999999999999999999
Q ss_pred CCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCC
Q 000474 1392 PPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1464 (1470)
Q Consensus 1392 P~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~~~~~d~~LPsa~TCfn~LkLP~YsS~eiLreKL~~AI~eg~ 1464 (1470)
|..|- .+.|.-.|..+++ .|.+||+|+||...|..|-||||.|||+||+.||+-..
T Consensus 2956 PAa~e-~~p~~aSimiRP~----------------dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKaKN 3011 (3015)
T KOG0943|consen 2956 PAAEE-GFPPMASIMIRPP----------------DDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKAKN 3011 (3015)
T ss_pred Ccccc-CCCCCCceeecCc----------------ccccCCcccchhhheeeechhhHHHHHHHHHHhhhccc
Confidence 98762 2234444444443 57899999999999999999999999999999999763
No 13
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.7e-08 Score=123.00 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=113.0
Q ss_pred HHHHHHHHhccCCCcccceeccccchHHHHHHhhccCccchhhhhhHHHHHHHHHHHH-HHhHhhccCCC-CCC-----C
Q 000474 377 GVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRF-KSFIAVALPNS-LDA-----G 449 (1470)
Q Consensus 377 ~~l~~l~~~l~~~~~VSsFEl~~SGLV~sLl~~Ls~~~~~~~~~~~~~~~r~~~l~~f-~~F~~~~~~~~-~~~-----~ 449 (1470)
..+.++...|... .++.||+.++|.++.++.||+++.+. -..+-.+++.| +.|....+... .+. -
T Consensus 860 ~~i~~lqssLs~~-e~~p~vlsh~~~~kn~~~~lsSg~t~-------~s~~~i~~~~fl~~f~~~ple~~~~~~~~v~~l 931 (1051)
T KOG0168|consen 860 LLIQKLQSSLSSL-EKFPFVLSHSGSKKNILAYLSSGETI-------LSVPCIRLRTFLHVFLRLPLEPMLQPNVQVPPL 931 (1051)
T ss_pred HHHHHHHHHHHhh-hcCceEecCchhhhhhhhhcccCcch-------hhhHHHHHHHHHHHHhcCCchhhccccccCCCc
Confidence 3455666666543 37999999999999999999986311 11222334434 56665554322 111 1
Q ss_pred CCChHHHHHHHHHHHhhhccccceEeccCCCCCCCCCCCCcccccc-cCceeEEEEecCCCCccCCCCCCeEEEeeccCh
Q 000474 450 DVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSAL-SQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASL 528 (1470)
Q Consensus 450 ~~~pls~LV~KLq~aLsr~E~FpV~~~~~~~~~~~~~~~~sg~s~L-akqlklrL~~~~d~~~l~~~s~~~VsIhpiATf 528 (1470)
...|+..+|+|+..||.++|+|||..++.+...++.+ ....+++. ++++|+.+++++.++..++|+|+.|+|+|.+-+
T Consensus 932 ~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~~~~~r~-~~~s~~~~n~~dlk~~~~~h~~~~~~kq~kG~~~~iep~~~~ 1010 (1051)
T KOG0168|consen 932 TSSPAEADVEKENNCLDQMEQVPVKVHDFPAGTGGRG-SQFSTSFFNTHDLKCLLQRHPTCKNCKQLKGGNVKIEPAAEV 1010 (1051)
T ss_pred cccchhhhhhcccCCcchhhcCCCccccccCcCCccc-chhhhheeecccccCccccCccccchhhhcCCCcccChhhhc
Confidence 3458999999999999999999999877664321101 01234444 999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcc
Q 000474 529 AAVEEFLWPRVQR 541 (1470)
Q Consensus 529 ~aLedyL~pRv~~ 541 (1470)
++++.|+..|-+.
T Consensus 1011 ~g~q~~~~~~~~~ 1023 (1051)
T KOG0168|consen 1011 QGIQRRSVVRKRG 1023 (1051)
T ss_pred hhhHHHHHHhhcc
Confidence 9999999888763
No 14
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=12 Score=47.20 Aligned_cols=197 Identities=21% Similarity=0.258 Sum_probs=137.3
Q ss_pred HHHHHhcCCHHHHHHHHHcCchHHHHHHhcCCCCCCCCC----CcccCCCChhhHHHHHHHHHHhCCCCCCCCccCCCCC
Q 000474 7 LLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSA----VPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSS 82 (1470)
Q Consensus 7 ~L~~~a~~sp~ls~~LLk~~I~~tL~~iLtG~~~~~~~~----~~~~~~Rp~eqv~E~l~LI~eLLP~lP~~~~~~~~~~ 82 (1470)
+|+.++-++++.....++.|++.-|.++|.-.++.-.++ +...+.-..+|-+++++ +-+||.|+.=....+ .
T Consensus 260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~--~~~L~~l~~ll~~s~--~ 335 (514)
T KOG0166|consen 260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN--SGALPVLSNLLSSSP--K 335 (514)
T ss_pred HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh--cChHHHHHHHhccCc--c
Confidence 577888999999999999999999999997666543332 33446778888888765 344554443100000 0
Q ss_pred cccccCCcccCCCCCCCCCCCCCCCCccchhhhHh-hhccChHHHHHH-HHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q 000474 83 NMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREK-LLSDQPELLQQF-GMDLLPVLIQIYGSSVNSPVRHKCLSVIGKL 160 (1470)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~e-ll~~~pe~l~~F-~~~LlPvL~~vy~SSv~~sVR~k~L~ailKm 160 (1470)
+. . + .+.-=-++ +..++++.++.. -..|+|.|+.+++++- +.+|+.+.=||..+
T Consensus 336 ~~-i--------------k--------kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 336 ES-I--------------K--------KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWAISNL 391 (514)
T ss_pred hh-H--------------H--------HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHhh
Confidence 00 0 0 00000000 112355554443 3479999999999887 99999999999999
Q ss_pred hcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhC---h----hhhhhhhHhhcHHHHHHHHhhcC
Q 000474 161 MYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKL---P----GTFSKMFVREGVVHAVDQLILAG 232 (1470)
Q Consensus 161 v~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Kl---p----d~f~~~F~REGV~~~I~~La~~~ 232 (1470)
..-.+++.++-+.+.. +-..|..+|.-.|..++..+|-..+.|++=. . ..|.......|-..+|+.|..++
T Consensus 392 ts~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he 469 (514)
T KOG0166|consen 392 TSSGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE 469 (514)
T ss_pred cccCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc
Confidence 9999999998887765 6677788888899888888888888877522 2 45666777778888998888765
No 15
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.75 E-value=7.1 Score=48.52 Aligned_cols=89 Identities=20% Similarity=0.368 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHH
Q 000474 126 LQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM 205 (1470)
Q Consensus 126 l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm 205 (1470)
=+||...++|.|++-|.++-+. +|.-+|.|+.-|+.+++.+++..=+.. +-..|-.-|+..|..+...+|++...++
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~--LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPT--LLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999998887 999999999999999998887765544 4445666678888889999999999999
Q ss_pred hhChhhhhhhhH
Q 000474 206 EKLPGTFSKMFV 217 (1470)
Q Consensus 206 ~Klpd~f~~~F~ 217 (1470)
+..|+.+..|..
T Consensus 394 ~~~~~~i~~hl~ 405 (415)
T PF12460_consen 394 EEAPELISEHLS 405 (415)
T ss_pred HcCHHHHHHHHH
Confidence 999998888665
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=71.39 E-value=20 Score=35.19 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=58.0
Q ss_pred ChHHHHHHHH-HHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHH
Q 000474 122 QPELLQQFGM-DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQI 200 (1470)
Q Consensus 122 ~pe~l~~F~~-~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqi 200 (1470)
.|+....|+. ..+|.|++..... +..||..++.++..+.+.- ++....+.+ ..+-..|...|...|..+.-.|+.+
T Consensus 38 ~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~ 114 (120)
T cd00020 38 NNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP-EDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGA 114 (120)
T ss_pred CHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc-HHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHH
Confidence 4666667776 8899999988875 8999999999999998763 344444443 3455666677777776666666666
Q ss_pred HHHHH
Q 000474 201 AEILM 205 (1470)
Q Consensus 201 aelLm 205 (1470)
...|.
T Consensus 115 l~~l~ 119 (120)
T cd00020 115 LSNLA 119 (120)
T ss_pred HHHhh
Confidence 65543
No 17
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.18 E-value=89 Score=41.01 Aligned_cols=60 Identities=33% Similarity=0.309 Sum_probs=50.0
Q ss_pred chhhhHhhhcc-ChHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhc
Q 000474 111 EVSAREKLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV 175 (1470)
Q Consensus 111 ~~~~R~ell~~-~pe~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~ 175 (1470)
....|+.-++. +...+.-+++++|++| |+-++.||+|||...+++++--+.+.+...|+.
T Consensus 299 Ivldrl~~l~~~~~~il~~l~mDvLrvL-----ss~dldvr~Ktldi~ldLvssrNvediv~~Lkk 359 (948)
T KOG1058|consen 299 IVLDRLSELKALHEKILQGLIMDVLRVL-----SSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKK 359 (948)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHc-----CcccccHHHHHHHHHHhhhhhccHHHHHHHHHH
Confidence 45567666664 5666888999999887 899999999999999999999999988887765
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=65.30 E-value=47 Score=32.47 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhh
Q 000474 133 LLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF 212 (1470)
Q Consensus 133 LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f 212 (1470)
++|.|++..... +..+|..++.++.+|... +++....+++. .+-..|..+|..+|+.+...|+.+..-|....+ ..
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~ 83 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAG-NNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DN 83 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcC-CHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HH
Confidence 566677666544 589999999999998776 35666666654 556667778888889999999999999988655 47
Q ss_pred hhhhHhhcHHHHHHHHhhc
Q 000474 213 SKMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 213 ~~~F~REGV~~~I~~La~~ 231 (1470)
...+.+.|++..+..+...
T Consensus 84 ~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HHHHHHCCChHHHHHHHhc
Confidence 7778888998888887764
No 19
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=62.44 E-value=42 Score=32.44 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhc--CchHHHHHHHHhcCCCchHhhHHHHHHH
Q 000474 129 FGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV--TNISSFLAGVLAWKDPHVLIPSLQIAEI 203 (1470)
Q Consensus 129 F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~--~~iaSfLAsiLs~~D~~lv~~ALqiael 203 (1470)
|=+.+|--|..+|..+-+..||..+|.++..||+..- +-+++ .++=+.|..+....+..+|..|.|+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 5567777788999999999999999999999996533 23333 3555666666666778899999999875
No 20
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=59.28 E-value=29 Score=36.89 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=57.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhh
Q 000474 134 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFS 213 (1470)
Q Consensus 134 lPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~ 213 (1470)
.--+||..+++-+.+ +.|+.+|.|=+.+ +++++.+.||.+.|.+++.+...|+
T Consensus 21 il~icD~I~~~~~~~--k~a~ral~KRl~~-------------------------~n~~v~l~AL~LLe~~vkNCG~~fh 73 (144)
T cd03568 21 ILDVCDKVKSDENGA--KDCLKAIMKRLNH-------------------------KDPNVQLRALTLLDACAENCGKRFH 73 (144)
T ss_pred HHHHHHHHhcCCccH--HHHHHHHHHHHcC-------------------------CCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 345688888874433 4666666665543 5678999999999999999999999
Q ss_pred hhhHhhcHHHHHHHHhhc
Q 000474 214 KMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 214 ~~F~REGV~~~I~~La~~ 231 (1470)
.++.....++++.+|...
T Consensus 74 ~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 74 QEVASRDFTQELKKLIND 91 (144)
T ss_pred HHHhhHHHHHHHHHHhcc
Confidence 999999999999999975
No 21
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.59 E-value=23 Score=42.30 Aligned_cols=93 Identities=12% Similarity=0.206 Sum_probs=65.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHH---HhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhCh
Q 000474 133 LLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQ---SLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLP 209 (1470)
Q Consensus 133 LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~---~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klp 209 (1470)
.+..|+....+. +..|..+++.++-+++.+.+...-. +++ ..+-.+|.+.+++.|..++..|+|+...|+ |.+
T Consensus 106 ~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l--~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~ 181 (312)
T PF03224_consen 106 PYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEAL--PKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSK 181 (312)
T ss_dssp -HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHH--HHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSH
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHH--HHHHHHHHHhhcCCCcchHHHHHHHHHHHh-Ccc
Confidence 456666644555 9999999999999999998876665 555 455566666666667677788899999888 444
Q ss_pred hhhhhhhHhhcHHHHHHHHhh
Q 000474 210 GTFSKMFVREGVVHAVDQLIL 230 (1470)
Q Consensus 210 d~f~~~F~REGV~~~I~~La~ 230 (1470)
. |+..|.++|.+..+-.+..
T Consensus 182 ~-~R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 182 E-YRQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp H-HHHHHHTHHHHHHHHHHHH
T ss_pred h-hHHHHHhcCcHHHHHHHHH
Confidence 4 9999999999999888875
No 22
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=57.98 E-value=53 Score=35.56 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=80.9
Q ss_pred ccC-hHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCC--HHHHHHhhhcCchHHHHHHHHhcCC-CchHh
Q 000474 120 SDQ-PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSS--AEMIQSLLSVTNISSFLAGVLAWKD-PHVLI 195 (1470)
Q Consensus 120 ~~~-pe~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~--~e~L~~~lk~~~iaSfLAsiLs~~D-~~lv~ 195 (1470)
..| +|.+.+.....+..|+.+-+..-...++..+..++.+|+.++. ++.-+++. +..+..|+...+.--+ .....
T Consensus 54 ~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~-tp~l~~~i~~ll~l~~~~~~~~ 132 (165)
T PF08167_consen 54 EQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIA-TPNLPKFIQSLLQLLQDSSCPE 132 (165)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHh-hccHHHHHHHHHHHHhccccHH
Confidence 344 7888788888899999999999999999999999999998753 56667775 3458888888877544 67888
Q ss_pred hHHHHHHHHHhhChhhhhhhhHh
Q 000474 196 PSLQIAEILMEKLPGTFSKMFVR 218 (1470)
Q Consensus 196 ~ALqiaelLm~Klpd~f~~~F~R 218 (1470)
.+|.....||...|-.|+++-.+
T Consensus 133 ~~l~~L~~ll~~~ptt~rp~~~k 155 (165)
T PF08167_consen 133 TALDALATLLPHHPTTFRPFANK 155 (165)
T ss_pred HHHHHHHHHHHHCCccccchHHH
Confidence 99999999999999999987654
No 23
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.47 E-value=13 Score=46.00 Aligned_cols=64 Identities=5% Similarity=-0.177 Sum_probs=58.2
Q ss_pred hhhHhcccchHHHHHHHHHHHHHhcCCCChhHhhhhccCCcccChhhHHHHHHhhhhchhHHHH
Q 000474 961 YEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALY 1024 (1470)
Q Consensus 961 ~~~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~ 1024 (1470)
.-.+.++++++++|++|..-++.--++.+.||.-.+-.+++.++++++.+|-+.|.++|.|.-.
T Consensus 128 ~~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~ta 191 (621)
T KOG0170|consen 128 AMCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTA 191 (621)
T ss_pred hhhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999888654
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=52.27 E-value=2.4e+02 Score=36.25 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=65.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhh
Q 000474 134 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFS 213 (1470)
Q Consensus 134 lPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~ 213 (1470)
++.|.++... -+.-||..++.++.++... +++.+..+.....+..++. -|..+|.-+-+.||.|..-|.+ .+.- .
T Consensus 162 ~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~-eL~~dDiLvqlnalell~~La~-~~~g-~ 236 (503)
T PF10508_consen 162 LSKLKSLMSQ-SSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLK-ELDSDDILVQLNALELLSELAE-TPHG-L 236 (503)
T ss_pred HHHHHHHHhc-cCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHH-HhcCccHHHHHHHHHHHHHHHc-ChhH-H
Confidence 5566665544 3678999999999998655 4566665555444444444 4444665566689999999888 4444 5
Q ss_pred hhhHhhcHHHHHHHHhhcC
Q 000474 214 KMFVREGVVHAVDQLILAG 232 (1470)
Q Consensus 214 ~~F~REGV~~~I~~La~~~ 232 (1470)
.++.+.||+.+|-.+....
T Consensus 237 ~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHhCCHHHHHHHHHhcc
Confidence 6678899999999998754
No 25
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=48.78 E-value=32 Score=29.66 Aligned_cols=42 Identities=36% Similarity=0.529 Sum_probs=35.1
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q 000474 118 LLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKL 160 (1470)
Q Consensus 118 ll~~~pe~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKm 160 (1470)
+...+++.+..|...++|.|++.....-. .||..+..++.+|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L~d~~~-~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLLQDDDD-SVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTSSSH-HHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhcC
Confidence 34568899999999999999999966544 9999999998765
No 26
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=44.88 E-value=42 Score=25.74 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=25.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHhcC
Q 000474 133 LLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 163 (1470)
Q Consensus 133 LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~ 163 (1470)
|+|.|++..+ .-++.||+.+..++.+|+.+
T Consensus 1 llp~l~~~l~-D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLN-DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhh
Confidence 5788998887 45999999999999998765
No 27
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.21 E-value=36 Score=35.99 Aligned_cols=71 Identities=8% Similarity=0.146 Sum_probs=54.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhh
Q 000474 134 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFS 213 (1470)
Q Consensus 134 lPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~ 213 (1470)
.--+||..++.-+.+ +.++.+|.|=+. ++++++.+.||.+.|.+|+.+...|+
T Consensus 22 ileicD~In~~~~~~--k~a~rai~krl~-------------------------~~n~~v~l~AL~LLe~~vkNCG~~fh 74 (139)
T cd03567 22 IQAFCEQINKEPEGP--QLAVRLLAHKIQ-------------------------SPQEKEALQALTVLEACMKNCGERFH 74 (139)
T ss_pred HHHHHHHHHcCCccH--HHHHHHHHHHHc-------------------------CCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 344677777665432 445555555443 46677889999999999999999999
Q ss_pred hhhHhhcHHHHHHHHhhc
Q 000474 214 KMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 214 ~~F~REGV~~~I~~La~~ 231 (1470)
.++.+.+.++++-+|..+
T Consensus 75 ~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 75 SEVGKFRFLNELIKLVSP 92 (139)
T ss_pred HHHHhHHHHHHHHHHhcc
Confidence 999999999999999963
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=41.11 E-value=1.2e+02 Score=34.03 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCC--HHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHH
Q 000474 125 LLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSS--AEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAE 202 (1470)
Q Consensus 125 ~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~--~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiae 202 (1470)
.+..|+..++|.|++..+.+ +.-||..+-.++.-|+.++. +..+. .+|...+.++.+.+=..+++.+.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~~~---------~~l~~~~~~Kn~~vR~~~~~~l~ 156 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKILL---------EILSQGLKSKNPQVREECAEWLA 156 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHH---------HHHHHHTT-S-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHHHH---------HHHHHHHhCCCHHHHHHHHHHHH
Confidence 37788999999999999997 56899999999999999888 33323 33444556777888889999999
Q ss_pred HHHhhCh---hhhhhhhHhhcHHHHHHHHhh
Q 000474 203 ILMEKLP---GTFSKMFVREGVVHAVDQLIL 230 (1470)
Q Consensus 203 lLm~Klp---d~f~~~F~REGV~~~I~~La~ 230 (1470)
.++++.+ +.+.....-+.+...|.++..
T Consensus 157 ~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~ 187 (228)
T PF12348_consen 157 IILEKWGSDSSVLQKSAFLKQLVKALVKLLS 187 (228)
T ss_dssp HHHTT-----GGG--HHHHHHHHHHHHHHHT
T ss_pred HHHHHccchHhhhcccchHHHHHHHHHHHCC
Confidence 9999999 544444333445555555554
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=37.25 E-value=1.9e+02 Score=38.97 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=50.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhh
Q 000474 134 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF 212 (1470)
Q Consensus 134 lPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f 212 (1470)
++.+.... +..++.||+++..+++|+.. .+|+.+. ...+...|-.+|..+|+.++..|+.+...+.+..|+.|
T Consensus 142 ~~~lkk~L-~D~~pYVRKtAalai~Kly~-~~pelv~----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 142 LEPLRRAV-ADPDPYVRKTAAMGLGKLFH-DDMQLFY----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHh-hCccccc----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 33333433 36789999999999999855 4554432 12233456667888889999999998888887776643
No 30
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.50 E-value=64 Score=33.70 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=40.6
Q ss_pred cCCCchHhhHHHHHHHHHhhChhhhhhhhHhhcHHHHHHHHhhc
Q 000474 188 WKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 188 ~~D~~lv~~ALqiaelLm~Klpd~f~~~F~REGV~~~I~~La~~ 231 (1470)
..++++++.||.+.|.++..+...|+.++...+.++++.+|...
T Consensus 48 ~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 48 NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC
Confidence 46678999999999999999999999999999999999999875
No 31
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=34.26 E-value=1.3e+02 Score=32.71 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=52.9
Q ss_pred hccChHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCc--hHHHHHHHHhcCCCchHhh
Q 000474 119 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTN--ISSFLAGVLAWKDPHVLIP 196 (1470)
Q Consensus 119 l~~~pe~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~--iaSfLAsiLs~~D~~lv~~ 196 (1470)
+...|.++..++..|+ .... .-++.||+.+|.++.+++. .+..|... +..++. .|.-.|+.+.-.
T Consensus 16 ~~r~~~~ve~~~~~l~----~~L~-D~~~~VR~~al~~Ls~Li~-------~d~ik~k~~l~~~~l~-~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 16 CIRYPNLVEPYLPNLY----KCLR-DEDPLVRKTALLVLSHLIL-------EDMIKVKGQLFSRILK-LLVDENPEIRSL 82 (178)
T ss_pred HHhCcHHHHhHHHHHH----HHHC-CCCHHHHHHHHHHHHHHHH-------cCceeehhhhhHHHHH-HHcCCCHHHHHH
Confidence 3335555555554444 4433 3489999999999999873 45555432 244444 444555677777
Q ss_pred HHHHHHHHHhh-Chhhhhhhh
Q 000474 197 SLQIAEILMEK-LPGTFSKMF 216 (1470)
Q Consensus 197 ALqiaelLm~K-lpd~f~~~F 216 (1470)
|......+..| -|..|...|
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred HHHHHHHHHHhccchHHHHHH
Confidence 77766666666 788775544
No 32
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.58 E-value=76 Score=33.33 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=54.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhh
Q 000474 136 VLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKM 215 (1470)
Q Consensus 136 vL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~ 215 (1470)
-+||.-.+. ..--+.++.+|.|=+.+ .++++++.||.+.+.||..+.+.|+.+
T Consensus 28 ~icD~i~~~--~~~~kea~~~l~krl~~-------------------------~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 28 EICDLINSS--PDGAKEAARALRKRLKH-------------------------GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp HHHHHHHTS--TTHHHHHHHHHHHHHTT-------------------------SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHcC--CccHHHHHHHHHHHHhC-------------------------CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466766666 33335566665555433 556788999999999999999999999
Q ss_pred hHhhcHHHHHHHHhhcC
Q 000474 216 FVREGVVHAVDQLILAG 232 (1470)
Q Consensus 216 F~REGV~~~I~~La~~~ 232 (1470)
+.+...+.++.+|+...
T Consensus 81 v~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSK 97 (140)
T ss_dssp HTSHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999999998754
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=33.58 E-value=1.1e+02 Score=38.73 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHH
Q 000474 122 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 201 (1470)
Q Consensus 122 ~pe~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqia 201 (1470)
.|+++..+ +|.+.+... .-++.||++++.+++|+... +|+.+.. . +...|-..|..+|+.++..|+.+.
T Consensus 108 ~~~~~~~l----~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~-~p~~~~~----~-~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 108 TPEMAEPL----IPDVIKLLS-DPSPYVRKKAALALLKIYRK-DPDLVED----E-LIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp SHHHHHHH----HHHHHHHHH-SSSHHHHHHHHHHHHHHHHH-CHCCHHG----G-HHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred ccchhhHH----HHHHHHHhc-CCchHHHHHHHHHHHHHhcc-CHHHHHH----H-HHHHHhhhccCCcchhHHHHHHHH
Confidence 67766544 455555544 55789999999999999866 4443332 2 567788888778888888999998
Q ss_pred HHHHhhChhhhh
Q 000474 202 EILMEKLPGTFS 213 (1470)
Q Consensus 202 elLm~Klpd~f~ 213 (1470)
..+ .+-++.|.
T Consensus 177 ~~i-~~~~~~~~ 187 (526)
T PF01602_consen 177 SEI-KCNDDSYK 187 (526)
T ss_dssp HHH-HCTHHHHT
T ss_pred HHH-ccCcchhh
Confidence 888 44555544
No 34
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=33.53 E-value=1.2e+02 Score=36.17 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhhhHhhcHHHHH
Q 000474 146 NSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAV 225 (1470)
Q Consensus 146 ~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~F~REGV~~~I 225 (1470)
|--+|+.+|.+|.++.+- +++.+.++-++..+--.+|.+-..+|--+....+.|.-.||+--.. +.++..||||..|
T Consensus 184 ndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg--reflaQeglIdli 260 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG--REFLAQEGLIDLI 260 (524)
T ss_pred hhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh--hhhcchhhHHHHH
Confidence 455899999999998765 6789999988888888888888889976777889998888876532 3445669999999
Q ss_pred HHHhhc
Q 000474 226 DQLILA 231 (1470)
Q Consensus 226 ~~La~~ 231 (1470)
..|..-
T Consensus 261 cnIIsG 266 (524)
T KOG4413|consen 261 CNIISG 266 (524)
T ss_pred HHHhhC
Confidence 988763
No 35
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.30 E-value=58 Score=34.51 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=40.6
Q ss_pred cCCCchHhhHHHHHHHHHhhChhhhhhhhHhhcHHHHHHHHhhc
Q 000474 188 WKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 188 ~~D~~lv~~ALqiaelLm~Klpd~f~~~F~REGV~~~I~~La~~ 231 (1470)
+.++++++.||.+.|.+++.+...|+.++...+.++++.+|+..
T Consensus 52 ~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~ 95 (142)
T cd03569 52 SKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT 95 (142)
T ss_pred CCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc
Confidence 35778999999999999999999999999999999999999964
No 36
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=32.48 E-value=1e+02 Score=41.27 Aligned_cols=104 Identities=19% Similarity=0.311 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhc-----------------------------
Q 000474 125 LLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV----------------------------- 175 (1470)
Q Consensus 125 ~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~----------------------------- 175 (1470)
.=+||.-+++|+|++-|. |+...+|+--|.++--++.+...+++..-...
T Consensus 860 ykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 860 YKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 447899999999999999 99999999999998888888776554321111
Q ss_pred ---C----chHHHHHHHHhc-CCC-----chHhhHHHHHHHHHhhChhhhhhhhHhhcHHHHHHHHhh
Q 000474 176 ---T----NISSFLAGVLAW-KDP-----HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 230 (1470)
Q Consensus 176 ---~----~iaSfLAsiLs~-~D~-----~lv~~ALqiaelLm~Klpd~f~~~F~REGV~~~I~~La~ 230 (1470)
. -+++++-..|+- .|+ .+-+.|||+.+.|.+++|-.++..|+++ |+.++.+...
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~-Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPL-VLRALIKILD 1005 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHH-HHHHhhhccC
Confidence 1 123333333332 232 2445899999999999999999999886 5555544443
No 37
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=32.03 E-value=83 Score=31.68 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhhhHhhcHHHHHHHH
Q 000474 180 SFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQL 228 (1470)
Q Consensus 180 SfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~F~REGV~~~I~~L 228 (1470)
.+|..=|.+.+++.++-||.+.|.|++.....|..+|.+..+..+.-++
T Consensus 40 ~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~ 88 (115)
T cd00197 40 DAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKF 88 (115)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHh
Confidence 4444445567889999999999999999999999999999888877555
No 38
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=31.92 E-value=58 Score=40.57 Aligned_cols=44 Identities=34% Similarity=0.515 Sum_probs=34.1
Q ss_pred hhhcc-ChHHHHHHHHHHHHHHHHHHhccCChHHHHH---HHHHHHHHh
Q 000474 117 KLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPVRHK---CLSVIGKLM 161 (1470)
Q Consensus 117 ell~~-~pe~l~~F~~~LlPvL~~vy~SSv~~sVR~k---~L~ailKmv 161 (1470)
++++. ..|++...+.+|.|.++++|.|+ ...||+. ||++|.++|
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHHHH
Confidence 34444 56788889999999999999976 5689975 677777766
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=31.91 E-value=1.1e+03 Score=35.69 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCchHHHHHHhcCCCCCCCCCCcccCCCChhhHHHHHHHHHHhCCCCCCCCccCCCCCcc
Q 000474 5 IRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNM 84 (1470)
Q Consensus 5 lR~L~~~a~~sp~ls~~LLk~~I~~tL~~iLtG~~~~~~~~~~~~~~Rp~eqv~E~l~LI~eLLP~lP~~~~~~~~~~~~ 84 (1470)
++.|..++.++.+--..+.++|..+-|.++|... ..+-..|++-.|+-| .
T Consensus 467 ~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--------------~~~iqeeAawAL~NL--------a-------- 516 (2102)
T PLN03200 467 VALLAILTDEVDESKWAITAAGGIPPLVQLLETG--------------SQKAKEDSATVLWNL--------C-------- 516 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--------------CHHHHHHHHHHHHHH--------h--------
Confidence 5677888888888888888899999999988321 012223334343311 0
Q ss_pred cccCCcccCCCCCCCCCCCCCCCCccchhhhHhhhccChHHHHHHH--HHHHHHHHHHHhccCChHHHHHHHHHHHHHhc
Q 000474 85 FVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG--MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMY 162 (1470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ell~~~pe~l~~F~--~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~ 162 (1470)
.+++..+..+ ...+|.|+++..+. +..++..++.+|.++++
T Consensus 517 ------------------------------------~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 517 ------------------------------------CHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred ------------------------------------CCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHh
Confidence 0111223333 24678899998776 89999999999999999
Q ss_pred CCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhh--hhhhHhhcHHHHHHHHhhcC
Q 000474 163 FSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF--SKMFVREGVVHAVDQLILAG 232 (1470)
Q Consensus 163 ~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f--~~~F~REGV~~~I~~La~~~ 232 (1470)
..+.+.+.. |..+|..+|+.+...+|..+.-++.-..... ..--...|.+..+..|...+
T Consensus 560 ~~d~~~I~~----------Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg 621 (2102)
T PLN03200 560 TADAATISQ----------LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS 621 (2102)
T ss_pred ccchhHHHH----------HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC
Confidence 999887733 3456888888888888887766655333321 11111346677777777654
No 40
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=30.92 E-value=2.3e+02 Score=33.07 Aligned_cols=69 Identities=26% Similarity=0.359 Sum_probs=54.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcC-CCchHhhHHHHHHHHHh
Q 000474 134 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWK-DPHVLIPSLQIAEILME 206 (1470)
Q Consensus 134 lPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~-D~~lv~~ALqiaelLm~ 206 (1470)
+|-|+....+ -+..+|..+|.++..+-+ +|++.++++.....++|+ +++..+ +..+++.+|-+.+-|-+
T Consensus 136 i~~ll~LL~~-G~~~~k~~vLk~L~nLS~--np~~~~~Ll~~q~~~~~~-~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 136 IPDLLSLLSS-GSEKTKVQVLKVLVNLSE--NPDMTRELLSAQVLSSFL-SLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHHc-CChHHHHHHHHHHHHhcc--CHHHHHHHHhccchhHHH-HHHccCCccHHHHHHHHHHHHHHH
Confidence 4555544443 578899999999988875 588999999999889988 777765 47889999999999843
No 41
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.49 E-value=1e+02 Score=40.39 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChh
Q 000474 132 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG 210 (1470)
Q Consensus 132 ~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd 210 (1470)
-|||-+..++--+-+++|+.-||.++.+++..+|.-...+.+- - |..-....|+.++++-++|.+.|+-+-++
T Consensus 428 ~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~l-----p-i~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 428 AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELL-----P-ILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHH-----H-HHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 4577777888888888888888888888886666555444421 1 12223456889999999999999888775
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.21 E-value=3.6e+02 Score=32.77 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=78.2
Q ss_pred cChHHHHHHHH-HHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCC-chHhhHH
Q 000474 121 DQPELLQQFGM-DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDP-HVLIPSL 198 (1470)
Q Consensus 121 ~~pe~l~~F~~-~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~-~lv~~AL 198 (1470)
++=+.+..|+. ..|+++.. |-.+-+..||.+...+|..++++ +|..-..+.... .=+.|+.+|++.++ +.-.-||
T Consensus 112 e~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qN-NP~~Qe~v~E~~-~L~~Ll~~ls~~~~~~~r~kaL 188 (342)
T KOG2160|consen 112 EDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQN-NPKSQEQVIELG-ALSKLLKILSSDDPNTVRTKAL 188 (342)
T ss_pred HhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHcc-cHHHHHHHHccCCCchHHHHHH
Confidence 33333444432 23555555 99999999999999999999999 666667776666 66778888887764 4447899
Q ss_pred HHHHHHHhhChhhhhhhhHhhcHHHHHHHHh
Q 000474 199 QIAEILMEKLPGTFSKMFVREGVVHAVDQLI 229 (1470)
Q Consensus 199 qiaelLm~Klpd~f~~~F~REGV~~~I~~La 229 (1470)
-.+-.|+.+.+......|+=-|..--+..|.
T Consensus 189 ~AissLIRn~~~g~~~fl~~~G~~~L~~vl~ 219 (342)
T KOG2160|consen 189 FAISSLIRNNKPGQDEFLKLNGYQVLRDVLQ 219 (342)
T ss_pred HHHHHHHhcCcHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998888777778544444443
No 43
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=29.89 E-value=3.2e+02 Score=29.70 Aligned_cols=81 Identities=10% Similarity=0.208 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhh
Q 000474 128 QFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK 207 (1470)
Q Consensus 128 ~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~K 207 (1470)
.|++.+.-..- ++.++.+|.+.||..+-+||.. ++..=..+-+.+++.+.+.-+-. .|..+-..|+-+.--|+.|
T Consensus 58 ~FI~Kia~~Vn---~~~~d~~i~q~sLaILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 58 SFIKKIASYVN---SSAMDASILQRSLAILESIVLN-SPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHHHHc---cccccchHHHHHHHHHHHHHhC-CHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Confidence 46665544333 7777999999999999999985 55666777788999998887766 5667888899999999999
Q ss_pred Chhhhh
Q 000474 208 LPGTFS 213 (1470)
Q Consensus 208 lpd~f~ 213 (1470)
.+|.=+
T Consensus 133 A~~~~r 138 (160)
T PF11841_consen 133 ADDSKR 138 (160)
T ss_pred CChHHH
Confidence 988533
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=27.25 E-value=2.8e+02 Score=37.36 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=54.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhhhH
Q 000474 144 SVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFV 217 (1470)
Q Consensus 144 Sv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~F~ 217 (1470)
+.|++|-..|..+++.+..+++++.+..+++.. +.-|-.+ .+.++.+-..+|+.+.+|+++.|.+|..++.
T Consensus 267 ~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl--~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASRCSQELIERCTVRV--NTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLD 337 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH--HHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 468999999999999999988877777665432 1222222 4577888888999999999999999887643
No 45
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=23.65 E-value=93 Score=37.66 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCeEEEEECCccCCCCCcHHHHHHHHh
Q 000474 793 PPKLIFTVGGKQLNRHLTIYQAIQRQL 819 (1470)
Q Consensus 793 ~~~l~f~~~~~~l~~~~Ti~~av~~~~ 819 (1470)
...||++-+|++|+++||+ ++|+++.
T Consensus 290 ~e~lEl~C~gqvL~~~mtL-aTVr~~~ 315 (331)
T PF11816_consen 290 EEWLELLCNGQVLPPDMTL-ATVRTFI 315 (331)
T ss_pred CceEEEEeCCeEcCCcCCH-HHHHHhh
Confidence 5689999999999999998 8887763
No 46
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=23.56 E-value=2.2e+02 Score=28.00 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=53.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhhhHh
Q 000474 143 SSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVR 218 (1470)
Q Consensus 143 SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~F~R 218 (1470)
+.-.++||-..|..+.|+|.--+ ..+..-..+-..+-..|..+|+=+-+.|.|....|..+.|+..+..+..
T Consensus 13 ~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 13 NDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred cCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 55668999999999999998766 2222222334455566767788788999999999999999966655544
No 47
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.14 E-value=1.1e+02 Score=31.95 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=38.5
Q ss_pred CCCchHhhHHHHHHHHHhhChhhhhhhhHhhcHHHHHHHHhhc
Q 000474 189 KDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 189 ~D~~lv~~ALqiaelLm~Klpd~f~~~F~REGV~~~I~~La~~ 231 (1470)
.++++.+.||.+.|.|+..+...|+.++.....+.++.+|+..
T Consensus 49 ~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 49 GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence 4568899999999999999999999999998888889888864
No 48
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=99 Score=39.10 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=50.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhhh
Q 000474 137 LIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMF 216 (1470)
Q Consensus 137 L~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~F 216 (1470)
+||..+.+.+.+- -+..+|.|=|. .+.+++.+.||.+.|.+|+.+.+.|+.++
T Consensus 25 IcD~IN~~~~~~~--eAvralkKRi~-------------------------~k~s~vq~lALtlLE~cvkNCG~~fh~~V 77 (470)
T KOG1087|consen 25 ICDLINSTEGGPK--EAVRALKKRLN-------------------------SKNSKVQLLALTLLETCVKNCGYSFHLQV 77 (470)
T ss_pred HHHHHhcCccCcH--HHHHHHHHHhc-------------------------cCCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4666666666544 44555555443 35567889999999999999999999999
Q ss_pred HhhcHHHHHHHHhh
Q 000474 217 VREGVVHAVDQLIL 230 (1470)
Q Consensus 217 ~REGV~~~I~~La~ 230 (1470)
.+++|+++.-++..
T Consensus 78 a~k~fL~emVk~~k 91 (470)
T KOG1087|consen 78 ASKEFLNEMVKRPK 91 (470)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999655554
No 49
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.22 E-value=4.2e+02 Score=29.25 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHH
Q 000474 122 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 201 (1470)
Q Consensus 122 ~pe~l~~F~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqia 201 (1470)
|.-++++|++.++-+.. +-+..||+.++..+.-++.. -+..+......|-++.++.++.+--.|.++-
T Consensus 2 ~s~l~Qryl~~Il~~~~-----~~~~~vr~~Al~~l~~il~q-------GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l 69 (187)
T PF12830_consen 2 CSALVQRYLKNILELCL-----SSDDSVRLAALQVLELILRQ-------GLVNPKQCVPTLIALETSPNPSIRSRAYQLL 69 (187)
T ss_pred cHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHhc-------CCCChHHHHhHhhhhhCCCChHHHHHHHHHH
Confidence 34567888877766433 45789999999888777643 2223344556666677788888888999999
Q ss_pred HHHHhhChhhhhhhhHhhcHHHHHHHH
Q 000474 202 EILMEKLPGTFSKMFVREGVVHAVDQL 228 (1470)
Q Consensus 202 elLm~Klpd~f~~~F~REGV~~~I~~L 228 (1470)
..|.+|.++.+...+. +||-...+--
T Consensus 70 ~~l~eK~~s~v~~~~~-~gi~~af~~~ 95 (187)
T PF12830_consen 70 KELHEKHESLVESRYS-EGIRLAFDYQ 95 (187)
T ss_pred HHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 9999999997776654 5887665433
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=21.93 E-value=2.8e+02 Score=36.26 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=65.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhhhH
Q 000474 138 IQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFV 217 (1470)
Q Consensus 138 ~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~F~ 217 (1470)
+.-|..+.++.+|++.|.+++-.+++++.+.....++..+ +++|+-..+.+|..+.-++||+.+-|.+-.-+.--..|.
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~-a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIP-ANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhh-HHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 3568899999999999999999999999888887777654 789999999999889999999887777665555444444
Q ss_pred h
Q 000474 218 R 218 (1470)
Q Consensus 218 R 218 (1470)
.
T Consensus 545 ~ 545 (678)
T KOG1293|consen 545 K 545 (678)
T ss_pred h
Confidence 4
No 51
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.39 E-value=5.8e+02 Score=34.28 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhCh
Q 000474 130 GMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLP 209 (1470)
Q Consensus 130 ~~~LlPvL~~vy~SSv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klp 209 (1470)
+.+|.|-.-+.-+. -++.||+|..-+..|++.= .|+..+- +-.-.+..|..+||.+++++|+++-.|++.-|
T Consensus 140 ardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK-~P~l~e~------f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 140 ARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRK-VPDLVEH------FVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHc-CchHHHH------hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 44677877777777 8999999999999998843 2233222 22334566778888899999999999999988
Q ss_pred hhhhhhhHh--hcHHHHHHHHhhcC
Q 000474 210 GTFSKMFVR--EGVVHAVDQLILAG 232 (1470)
Q Consensus 210 d~f~~~F~R--EGV~~~I~~La~~~ 232 (1470)
| =+.+|+. ++.|+-+++|....
T Consensus 212 ~-~l~~fr~l~~~lV~iLk~l~~~~ 235 (866)
T KOG1062|consen 212 D-ALSYFRDLVPSLVKILKQLTNSG 235 (866)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 7 4566766 67777788877654
No 52
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=20.39 E-value=2.1e+02 Score=30.72 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=67.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCCHHHHHHhhhcCchHHHHHHHHhcCCCchHhhHHHHHHHHHhhChhhhhhhhHhhcHHH
Q 000474 144 SVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVH 223 (1470)
Q Consensus 144 Sv~~sVR~k~L~ailKmv~~~~~e~L~~~lk~~~iaSfLAsiLs~~D~~lv~~ALqiaelLm~Klpd~f~~~F~REGV~~ 223 (1470)
.....||..++.++-|.+ -...+.. ..-+.-|+-..+...+..-.+.|+.++..|+.=.||+=...|.+||++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~-----~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEF-----KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHH-----HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHH
Confidence 677899999999999994 1111111 2456788888888877778889999999999999999999999999999
Q ss_pred HHHHHhh
Q 000474 224 AVDQLIL 230 (1470)
Q Consensus 224 ~I~~La~ 230 (1470)
.+..++.
T Consensus 90 ~l~~~~~ 96 (157)
T PF11701_consen 90 SLLPLAS 96 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
Done!