Query 000474
Match_columns 1470
No_of_seqs 373 out of 1561
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 16:22:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000474.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_253-257//hhsearch_pdb/000474hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 1.0 1 1 689.0 30.9 373 995-1470 16-405 (405)
2 1zvd_A SMAD ubiquitination reg 1.0 1 1 687.1 27.1 362 1004-1470 3-380 (380)
3 2oni_A E3 ubiquitin-protein li 1.0 1 1 684.8 25.0 367 993-1462 10-392 (392)
4 1c4z_A E6AP, ubiquitin-protein 1.0 1 1 683.6 20.7 339 1049-1470 4-358 (358)
5 3olm_A E3 ubiquitin-protein li 1.0 1 1 676.4 23.5 340 1049-1469 73-428 (429)
6 1nd7_A WW domain-containing pr 1.0 1 1 670.5 29.3 357 1004-1464 3-374 (374)
7 3pt3_A E3 ubiquitin-protein li 1.0 1 1 254.3 8.1 109 1340-1469 3-117 (118)
8 3ul1_B Importin subunit alpha- 1.0 1 1 45.2 19.9 97 132-231 100-196 (510)
9 4b8j_A Importin subunit alpha- 1.0 1 1 44.3 16.9 94 134-230 76-170 (528)
10 3tpo_A Importin subunit alpha- 1.0 1 1 42.2 19.6 98 131-231 118-215 (529)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=1.00 E-value=1 Score=689.02 Aligned_cols=373 Identities=29% Similarity=0.471 Sum_probs=322.7
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC--
Q ss_conf 210699435756689978862001069999999840479999973012201543443134681379999999996404--
Q 000474 995 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS-- 1072 (1470)
Q Consensus 995 l~~~~PFLfpfetR~~~f~~t~fg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~~-- 1072 (1470)
....-|. .+|+.|+.+|+. .++.... + .+..+.+++|+|++|++|+++++....
T Consensus 16 ~~~~~~~-~~f~~k~~~F~~----------~l~~~~~--~-----------~~~~~~~l~VrR~~i~eds~~~l~~~~~~ 71 (405)
T 3h1d_A 16 VLFQGPH-MDFDVKRKYFRQ----------ELERLDE--G-----------LRKEDMAVHVRRDHVFEDSYRELHRKSPE 71 (405)
T ss_dssp GGGCSTT-SCHHHHHHHHHH----------HHHHHTT--T-----------CCCCEEEEEECGGGHHHHHHHHHTTSCTT
T ss_pred HHHCCCC-CCHHHHHHHHHH----------HHHHHHC--C-----------CCCCCEEEEEECCHHHHHHHHHHHCCCHH
T ss_conf 8614987-688999999999----------9986224--7-----------88986699994860799999999715988
Q ss_pred CCCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 997508999917522476-5058999999999843799983238999999853468888889887888874236898877
Q 000474 1073 SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1151 (1470)
Q Consensus 1073 ~~k~~LeVeF~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~id~~~~~~~~~~~~~~~yv~~~~GLfP 1151 (1470)
..++.|+|+|.||+|+|. |++||||++|++|+++|+++||+.++. + .+ .++|
T Consensus 72 ~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~-~---------------------~~-----~~~~ 124 (405)
T 3h1d_A 72 EMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPG-D---------------------RV-----TYTI 124 (405)
T ss_dssp GGGSEEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSS-C---------------------SS-----EEEE
T ss_pred HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC-C---------------------CE-----EEEE
T ss_conf 7616669997898774787369999999999983986444022268-8---------------------32-----6730
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999977766887024789998702320000003980246679999999817879935310007999999999999986
Q 000474 1152 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1231 (1470)
Q Consensus 1152 ~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~~~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~ksL~~L~~~~~ 1231 (1470)
+|.+.. ..+++.+|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 125 np~s~~--------~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~-- 194 (405)
T 3h1d_A 125 NPSSHA--------NPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN-- 194 (405)
T ss_dssp CCC-------------CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHS--
T ss_pred CCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 773225--------7557789998869999999389825877629999982699897898987549999998666509--
Q ss_pred HHHHHHHCCCCCCCHHHCCCCCCCCCCC--CCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 5432100136761002113225885334--52100149----9-97121289996--45857288899999999766218
Q 000474 1232 RKQHLESMTSDNCEEVVDLRFRGAPIED--LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGI 1302 (1470)
Q Consensus 1232 ~k~~~~~~~~~~~~~~~~l~~~~~~ied--L~L~Ftlp----g-~~~ieL~pgG~--~VT~~N~~eYV~lv~~~~L~~gv 1302 (1470)
++++ ++|+|++. | ..++||+|||+ +||.+|+++||+++++|+|+.+|
T Consensus 195 ------------------------~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v 250 (405)
T 3h1d_A 195 ------------------------DVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAI 250 (405)
T ss_dssp ------------------------CGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGG
T ss_pred ------------------------CHHHHCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------85564341489998523786236860578977742667689999999999998779
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999720113354333688999898652289877898886321185487799986899999998049999999761
Q 000474 1303 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFC 1382 (1470)
Q Consensus 1303 ~~Q~~AFr~GF~~V~p~~~L~~Fsp~EL~~LicG~~e~w~~e~L~~~~~~d~Gy~~~s~~I~~Fwevl~~fs~eerr~FL 1382 (1470)
+.|++||++||++|+|..+|++|+|+||+.|+||.++ ||+++|+++++|. ||+.+|++|+|||+|+++|+.+||++||
T Consensus 251 ~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~~s~eer~~fL 328 (405)
T 3h1d_A 251 RKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFDQADRAKFL 328 (405)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999999999998702888757999999998488777-9999998308034-8898870474499899749999999999
Q ss_pred HHHCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 4122898889999766888-----15787148999988888999999999999967745567203889999999999999
Q 000474 1383 QFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLV 1457 (1470)
Q Consensus 1383 qFvTGs~rLPigGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~ 1457 (1470)
||+|||+|+|++||+.|+| +|+|.+... ++++||+||||||+|+||+|+|+|+||+||+
T Consensus 329 ~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~----------------~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~ 392 (405)
T 3h1d_A 329 QFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR----------------STDRLPSAHTCFNQLDLPAYESFEKLRHMLL 392 (405)
T ss_dssp HHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECS----------------CTTSCCEEEGGGTEEEEECCSSHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCC----------------CCCCCCCCEECCCEEECCCCCCHHHHHHHHH
T ss_conf 997299988987510036667873079951799----------------8877944000218757989999999999999
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9998098443369
Q 000474 1458 YAISEGQGSFDLS 1470 (1470)
Q Consensus 1458 ~AI~eg~g~F~LS 1470 (1470)
+||+||+++|+|-
T Consensus 393 ~AI~e~~~GFgla 405 (405)
T 3h1d_A 393 LAIQEASEGFGLA 405 (405)
T ss_dssp HHHHC--------
T ss_pred HHHHHCCCCCCCC
T ss_conf 9998077786879
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=687.05 Aligned_cols=362 Identities=26% Similarity=0.420 Sum_probs=318.3
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC-C-CCCCCEEEE
Q ss_conf 75668997886200106999999984047999997301220154344313468137999999999640-4-997508999
Q 000474 1004 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY-S-SQKAVLEVE 1081 (1470)
Q Consensus 1004 pfetR~~~f~~t~fg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~-~-~~k~~LeVe 1081 (1470)
+|+.|..+|+.. ++..+. ...+.+++|+|++|++|+++++... . +.++.|+|+
T Consensus 3 ~f~~k~~~f~~~----------l~~~~~---------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~ 57 (380)
T 1zvd_A 3 DLVQKLKILRQE----------LSQQQP---------------QAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIK 57 (380)
T ss_dssp SHHHHHHHHHHH----------HHHHSC---------------SSCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHHH----------HHHCCC---------------CCCCEEEEECCCCHHHHHHHHHHCCCHHHHCCCEEEE
T ss_conf 759999999999----------874278---------------8986699976677999999999745979846745999
Q ss_pred EECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 917522476-5058999999999843799983238999999853468888889887888874236898877999999777
Q 000474 1082 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1160 (1470)
Q Consensus 1082 F~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~id~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~ 1160 (1470)
|.||+|+|. ||+||||+++++|+++|+++||..+.. +.|. ++|+|.+..
T Consensus 58 F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~~-----~~~np~s~~--- 107 (380)
T 1zvd_A 58 FRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRD----------------------DIYT-----LQINPDSAV--- 107 (380)
T ss_dssp ETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETT----------------------EEEE-----EEECTTGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC----------------------CCEE-----ECCCCHHHC---
T ss_conf 7787675888518999999999980876787003688----------------------8713-----435832215---
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66887024789998702320000003980246679999999817879935310007999999999999986543210013
Q 000474 1161 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1240 (1470)
Q Consensus 1161 ~~~~~~~~~l~~F~fLG~liakAl~d~~~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~ 1240 (1470)
..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 108 -----~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~----------- 171 (380)
T 1zvd_A 108 -----NPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILEN----------- 171 (380)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHS-----------
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHC-----------
T ss_conf -----8678999998588887998179524775879999999579887788777689999999998708-----------
Q ss_pred CCCCCHHHCCCCCCCCCCC-CCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 6761002113225885334-52100149----9-97121289996--458572888999999997662189999999972
Q 000474 1241 SDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAG 1312 (1470)
Q Consensus 1241 ~~~~~~~~~l~~~~~~ied-L~L~Ftlp----g-~~~ieL~pgG~--~VT~~N~~eYV~lv~~~~L~~gv~~Q~~AFr~G 1312 (1470)
++++ |+|+|+++ | ..++||+|||+ +||.+|+++||+++++|+|+.+|+.|++||++|
T Consensus 172 ---------------d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~G 236 (380)
T 1zvd_A 172 ---------------DITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKG 236 (380)
T ss_dssp ---------------CCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred ---------------CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------81000234168863037957678527999777144023999999999999987699999999975
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 01133543336889998986522898778988863211854877999868999999980499999997614122898889
Q 000474 1313 FNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLP 1392 (1470)
Q Consensus 1313 F~~V~p~~~L~~Fsp~EL~~LicG~~e~w~~e~L~~~~~~d~Gy~~~s~~I~~Fwevl~~fs~eerr~FLqFvTGs~rLP 1392 (1470)
|++|+|..+|++|+|+||+.|+||.++ +|+++|+++++|. ||+.+|++|+|||+||++|+++||++|||||||++|+|
T Consensus 237 f~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP 314 (380)
T 1zvd_A 237 FNEVIPQHLLKTFDEKELELIICGLGK-IDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVP 314 (380)
T ss_dssp HHHHSCGGGGTTCCHHHHHHHHHCBSS-CCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHCCEEC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 988758999857999999986489987-7743565331753-88987613626999997289999999999983899889
Q ss_pred CCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999766888-----157871489999888889999999999999677455672038899999999999999998098443
Q 000474 1393 PGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1467 (1470)
Q Consensus 1393 igGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F 1467 (1470)
++||++|+| +|+|+++.. ++++||+||||||+|+||+|+|+|+|++||++||+||+| |
T Consensus 315 ~~Gf~~L~~~~gp~~f~I~~~~~----------------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~G-F 377 (380)
T 1zvd_A 315 LQGFKALQGAAGPRLFTIHQIDA----------------CTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCG-F 377 (380)
T ss_dssp TTCGGGCEETTEECCEEEEECCC----------------CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCCHHHCCCCCCCCCEEEEECCC----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-C
T ss_conf 86410025667887659995589----------------999897786275887898989999999999999980788-6
Q ss_pred CCC
Q ss_conf 369
Q 000474 1468 DLS 1470 (1470)
Q Consensus 1468 ~LS 1470 (1470)
+|.
T Consensus 378 ~l~ 380 (380)
T 1zvd_A 378 AVE 380 (380)
T ss_dssp ---
T ss_pred CCC
T ss_conf 869
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=1.00 E-value=1 Score=684.77 Aligned_cols=367 Identities=28% Similarity=0.433 Sum_probs=322.5
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 55210699435756689978862001069999999840479999973012201543443134681379999999996404
Q 000474 993 YQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS 1072 (1470)
Q Consensus 993 ~~l~~~~PFLfpfetR~~~f~~t~fg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~~ 1072 (1470)
..+...+||.++|+.|+.||+.. +... + ....+.+++|+|++|++|+++++....
T Consensus 10 ~~~~~~~p~~~~f~~k~~~f~~~----------l~~~-----------~----~~~~~~~l~V~R~~i~eds~~~l~~~~ 64 (392)
T 2oni_A 10 GRENLYFQGSREFKQKYDYFRKK----------LKKP-----------A----DIPNRFEMKLHRNNIFEESYRRIMSVK 64 (392)
T ss_dssp ----CCSTTHHHHHHHHHHHHHH----------CCCC-----------S----SSCSEEEEEECGGGHHHHHHHHHHHCS
T ss_pred HHCCCCCCCCCCHHHHHHHHHHH----------HHCC-----------C----CCCCCEEEEECCCCHHHHHHHHHHCCC
T ss_conf 21035798621189999999999----------7125-----------4----789977999817866999999997659
Q ss_pred C---CCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9---97508999917522476-5058999999999843799983238999999853468888889887888874236898
Q 000474 1073 S---QKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLG 1148 (1470)
Q Consensus 1073 ~---~k~~LeVeF~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~id~~~~~~~~~~~~~~~yv~~~~G 1148 (1470)
. .++.|+|+|.||+|+|. ||+||||+++++|+++|+++||..+.. +.| .
T Consensus 65 ~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~-----~ 117 (392)
T 2oni_A 65 RPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSAT----------------------DNY-----T 117 (392)
T ss_dssp CGGGGGSEEEEEEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESST----------------------TCC-----C
T ss_pred CHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCC----------------------CCC-----E
T ss_conf 2776274179998787662688438999999999973966687400389----------------------882-----2
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHH
Q ss_conf 87799999977766887024789998702320000003980246679999999817879935310007999999999999
Q 000474 1149 LFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHV 1228 (1470)
Q Consensus 1149 LfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~~~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~ksL~~L~~ 1228 (1470)
++|+|.+.. . ..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||+++++|++|++
T Consensus 118 ~~~np~s~~---~----~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~ 190 (392)
T 2oni_A 118 LQINPNSGL---C----NEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILE 190 (392)
T ss_dssp EEECTTHHH---H----CTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHH
T ss_pred ECCCCCCCC---C----CHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHC
T ss_conf 302886354---6----677888887335543044237950376425999999967988788987748999999888864
Q ss_pred HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCC----CC-CCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 986543210013676100211322588533452100149----99-7121289996--4585728889999999976621
Q 000474 1229 IVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GY-PDYILKPGDE--NVDINNLEEYISLVVDATVKTG 1301 (1470)
Q Consensus 1229 ~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g~-~~ieL~pgG~--~VT~~N~~eYV~lv~~~~L~~g 1301 (1470)
. ++++|+|+|+++ |. .++||+|||+ +||.+|+++||+++++|+|+.+
T Consensus 191 ~--------------------------d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~ 244 (392)
T 2oni_A 191 N--------------------------DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNR 244 (392)
T ss_dssp S--------------------------CCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTT
T ss_pred C--------------------------CHHHCEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9--------------------------96573046899410389446896379985673444429999999999988666
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 89999999972011335433368899989865228987789888632118548779998689999999804999999976
Q 000474 1302 IMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAF 1381 (1470)
Q Consensus 1302 v~~Q~~AFr~GF~~V~p~~~L~~Fsp~EL~~LicG~~e~w~~e~L~~~~~~d~Gy~~~s~~I~~Fwevl~~fs~eerr~F 1381 (1470)
|+.|++||++||++|+|..+|++|+|+||+.|+||.++ +|+++|+++|+|+|||+.++++|+|||+||.+|+++||++|
T Consensus 245 i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~f 323 (392)
T 2oni_A 245 VQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRL 323 (392)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHCCEEECCCCCCCCCHHEEHHHHHHHCCHHHHHHH
T ss_conf 77999999999998566876516999999886068988-78999840158778879987322009999984999999999
Q ss_pred HHHHCCCCCCCCCCCCCCC-----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 1412289888999976688-----81578714899998888899999999999996774556720388999999999999
Q 000474 1382 CQFVTGAPRLPPGGLAVLN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1456 (1470)
Q Consensus 1382 LqFvTGs~rLPigGf~~L~-----p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL 1456 (1470)
||||||++|+|++||+.|. ++|+|.+.. .+++||+||||||+|+||+|+|+|+||+||
T Consensus 324 L~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~-----------------~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL 386 (392)
T 2oni_A 324 LQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWG-----------------SPEKLPRAHTCFNRLDLPPYETFEDLREKL 386 (392)
T ss_dssp HHHHHSCSCCCTTCGGGCEETTEECCCEEEECS-----------------CTTSCCEEEGGGTEEEECCCSSHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHCCCCCCCCEEEEECC-----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHH
T ss_conf 998718998898555440456788755997589-----------------888696887256786898989999999999
Q ss_pred HHHHHH
Q ss_conf 999980
Q 000474 1457 VYAISE 1462 (1470)
Q Consensus 1457 ~~AI~e 1462 (1470)
++||++
T Consensus 387 ~~AI~n 392 (392)
T 2oni_A 387 LMAVEN 392 (392)
T ss_dssp HHHHC-
T ss_pred HHHHHC
T ss_conf 999739
No 4
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=1.00 E-value=1 Score=683.56 Aligned_cols=339 Identities=31% Similarity=0.536 Sum_probs=305.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHC-----CCCCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 44313468137999999999640-----4997508999917522476-50589999999998437999832389999998
Q 000474 1049 ERQKVRVSRNRILDSAAKVMEMY-----SSQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPS 1122 (1470)
Q Consensus 1049 ~r~kv~V~R~~il~sA~~vl~~~-----~~~k~~LeVeF~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~ 1122 (1470)
+..+++|+|++|++|++++++.+ .+.++.|+|+|.||+|+|. ||+||||+++++|+++|+++||+.++.+
T Consensus 4 ~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~---- 79 (358)
T 1c4z_A 4 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEST---- 79 (358)
T ss_dssp CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTT----
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCC----
T ss_conf 7389997687579999999998732697986574699977876748886399999999999718767955652899----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 53468888889887888874236898877999999777668870247899987023200000039802466799999998
Q 000474 1123 MEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLV 1202 (1470)
Q Consensus 1123 ~~id~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~~~ldl~fs~~f~K~l 1202 (1470)
. .++|+|.+. ....+|+|+|++||+||++++++|++|+++|||+|
T Consensus 80 -----------------~-------~~~~np~s~-----------~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~l 124 (358)
T 1c4z_A 80 -----------------K-------LFWFNPSSF-----------ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 124 (358)
T ss_dssp -----------------T-------EEEECTTCC-----------SCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHH
T ss_pred -----------------C-------EEEECCCCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf -----------------8-------474277322-----------33577886999999999779976876889999999
Q ss_pred HCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC-CCCCCCCCCC-----CC-CCEECC
Q ss_conf 1787993531000799999999999998654321001367610021132258853-3452100149-----99-712128
Q 000474 1203 LGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPI-EDLCLDFTLP-----GY-PDYILK 1275 (1470)
Q Consensus 1203 lg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~i-edL~L~Ftlp-----g~-~~ieL~ 1275 (1470)
+|.+++++||+.+||++|++|++|+++ ++ ++ +++||+|++. |. .++||+
T Consensus 125 lg~~~~l~Dl~~~Dp~l~~sL~~l~~~-----------------------~~-d~~~~l~ltF~~~~~~~~G~~~~~eL~ 180 (358)
T 1c4z_A 125 MGKKGTFRDLGDSHPVLYQSLKDLLEY-----------------------EG-NVEDDMMITFQISQTDLFGNPMMYDLK 180 (358)
T ss_dssp TTCCCCHHHHHHHSHHHHHHHHHHHHC-----------------------CS-CHHHHTCCBSEEEECCTTTCCEEEESS
T ss_pred HCCCCCHHHHHHHCHHHHHHHHHHHHC-----------------------CC-CHHHHCCCEEEEECCCCCCCEEEEECC
T ss_conf 589998899998699999999999855-----------------------77-666650350787414568975346447
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHCEE
Q ss_conf 9996--45857288899999999766218999999997201133543336-88999898652289877898886321185
Q 000474 1276 PGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKF 1352 (1470)
Q Consensus 1276 pgG~--~VT~~N~~eYV~lv~~~~L~~gv~~Q~~AFr~GF~~V~p~~~L~-~Fsp~EL~~LicG~~e~w~~e~L~~~~~~ 1352 (1470)
|||+ +||.+|+++||+++++|+|+++|+.|++||++||++|+|...|. +|+|+||+.++||.++ ||+++|+++|+|
T Consensus 181 p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~-id~~~l~~~t~y 259 (358)
T 1c4z_A 181 ENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEY 259 (358)
T ss_dssp TTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCC-CCCTTTSTTCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCC-CCHHHHHHHCEE
T ss_conf 7986665442129999999999986210999999999888873695253348999999998613567-889999987131
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48779998689999999804999999976141228988899997668881578714899998888899999999999996
Q 000474 1353 DHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLP 1432 (1470)
Q Consensus 1353 d~Gy~~~s~~I~~Fwevl~~fs~eerr~FLqFvTGs~rLPigGf~~L~p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LP 1432 (1470)
+|||+.++++|+|||+||++|+++||++||||+||++|+|++||+.| +|+|++..+ .+++||
T Consensus 260 ~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~~~~----------------~~~~LP 321 (358)
T 1c4z_A 260 DGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGP----------------DTERLP 321 (358)
T ss_dssp ESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEEEE----------------SCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC--EEEEECCCC----------------CCCCCE
T ss_conf 78989776045369999973999999999989708997899885545--246204789----------------888880
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 77455672038899999999999999998098443369
Q 000474 1433 SVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470 (1470)
Q Consensus 1433 sa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~LS 1470 (1470)
+||||||+|+||+|+|+|+||+||++||++|+| |+|.
T Consensus 322 ~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~G-Fgl~ 358 (358)
T 1c4z_A 322 TSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG-FGML 358 (358)
T ss_dssp EEEGGGTEEEEEECSCHHHHHHHHHHHHHHC-------
T ss_pred EEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 787357886898989999999999999981899-7849
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=676.39 Aligned_cols=340 Identities=27% Similarity=0.426 Sum_probs=305.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44313468137999999999640--4997508999917522476-50589999999998437999832389999998534
Q 000474 1049 ERQKVRVSRNRILDSAAKVMEMY--SSQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1125 (1470)
Q Consensus 1049 ~r~kv~V~R~~il~sA~~vl~~~--~~~k~~LeVeF~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~i 1125 (1470)
.+.+++|+|++|++|+++.+... .+.++.|+|+|.||+|+|. ||+||||+++++|+++|+++||..+.. +
T Consensus 73 ~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~-~------ 145 (429)
T 3olm_A 73 GQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAY-D------ 145 (429)
T ss_dssp SCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSS-S------
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECC-C------
T ss_conf 855899954211899999998468575186369997998743787449999999999974966799435079-9------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCC
Q ss_conf 68888889887888874236898877999999777668870247899987023200000039802466799999998178
Q 000474 1126 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1205 (1470)
Q Consensus 1126 d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~~~ldl~fs~~f~K~llg~ 1205 (1470)
.| .++|+|.... ...++.+|+|+|++||+||++++++|++|+++|||+|+|.
T Consensus 146 ---------------~~-----~~~~np~s~~--------~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 146 ---------------NY-----TIQINPNSGI--------NPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp ---------------SC-----CEEECGGGGG--------STTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred ---------------CE-----EEEECCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf ---------------81-----5756886558--------8778999999999999999669866877689999761399
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCC-CCCCCCCCC----C-CCCEECCCCCC
Q ss_conf 79935310007999999999999986543210013676100211322588533-452100149----9-97121289996
Q 000474 1206 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIE-DLCLDFTLP----G-YPDYILKPGDE 1279 (1470)
Q Consensus 1206 ~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ie-dL~L~Ftlp----g-~~~ieL~pgG~ 1279 (1470)
+++++||+.+||+++++|++|++. +++ .|+|+|++. | ..++||+|||+
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~~--------------------------d~~~~l~l~F~~~~~~~g~~~~veL~p~G~ 251 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLEN--------------------------SIDGVLDLTFSADDERFGEVVTVDLKPDGR 251 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTTS--------------------------CCTTTCCCBSEEEEEETTEEEEEESSTTGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC--------------------------CHHHHHCCCEEEEECCCCCEEEEECCCCCC
T ss_conf 997999998769999999999848--------------------------987762374388740479634685467876
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCC
Q ss_conf --458572888999999997662189999999972011335433368899989865228987789888632118548779
Q 000474 1280 --NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYT 1357 (1470)
Q Consensus 1280 --~VT~~N~~eYV~lv~~~~L~~gv~~Q~~AFr~GF~~V~p~~~L~~Fsp~EL~~LicG~~e~w~~e~L~~~~~~d~Gy~ 1357 (1470)
+||.+|+++||+++++|+|+++|+.|++||++||++|+|..+|++|+|+||+.|+||.++ +|+++|+++++| +||+
T Consensus 252 ~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y-~Gy~ 329 (429)
T 3olm_A 252 NIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDY-RGYQ 329 (429)
T ss_dssp GSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEE-ESCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCC-CCCC
T ss_conf 66657046899999999999987699999999997563279999845999999999569988-899999974623-6999
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99868999999980499999997614122898889999766888-----1578714899998888899999999999996
Q 000474 1358 AKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLP 1432 (1470)
Q Consensus 1358 ~~s~~I~~Fwevl~~fs~eerr~FLqFvTGs~rLPigGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LP 1432 (1470)
.++++|+|||+||++|+.+||++||||||||+|+|++||+.|.| +|+|++.. .+++||
T Consensus 330 ~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~-----------------~~~~LP 392 (429)
T 3olm_A 330 ESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG-----------------EVQQLP 392 (429)
T ss_dssp TTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEECCEEEECCS-----------------CTTSCC
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC-----------------CCCCCC
T ss_conf 886299999999986899999999958518998897530004676777218996289-----------------877897
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7745567203889999999999999999809844336
Q 000474 1433 SVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1469 (1470)
Q Consensus 1433 sa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~L 1469 (1470)
+||||||+|+||+|+|+|+||+||++||+|++| |++
T Consensus 393 ~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~G-Fg~ 428 (429)
T 3olm_A 393 KSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG-FGQ 428 (429)
T ss_dssp EEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC-----
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC-CCC
T ss_conf 220143776897989999999999999972798-787
No 6
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=1.00 E-value=1 Score=670.50 Aligned_cols=357 Identities=30% Similarity=0.445 Sum_probs=312.5
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCEEEE
Q ss_conf 756689978862001069999999840479999973012201543443134681379999999996404--997508999
Q 000474 1004 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVE 1081 (1470)
Q Consensus 1004 pfetR~~~f~~t~fg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~~--~~k~~LeVe 1081 (1470)
+|+.|..+|+. .++... ..++.+++|+|++|++|+++.+.... ..++.|+|+
T Consensus 3 ~f~~k~~~f~~----------~~~~~~----------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~ 56 (374)
T 1nd7_A 3 GFRWKLAHFRY----------LCQSNA----------------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVI 56 (374)
T ss_dssp THHHHHHHHHH----------HHHHTC----------------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHH----------HHHHCC----------------CCCCEEEEECCCCHHHHHHHHHHHCCHHHCCCEEEEE
T ss_conf 75899999999----------986247----------------9997699987887799999999836987615548999
Q ss_pred EECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 917522476-5058999999999843799983238999999853468888889887888874236898877999999777
Q 000474 1082 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1160 (1470)
Q Consensus 1082 F~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~id~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~ 1160 (1470)
|.||+|+|. ||+||||+++++|+++|+++||+.++. +.| .++|+|.+..
T Consensus 57 F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~----------------------~~~-----~~~~~p~s~~--- 106 (374)
T 1nd7_A 57 FRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGK----------------------NNY-----CLQINPASTI--- 106 (374)
T ss_dssp ETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSS----------------------SSC-----CEEECGGGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC----------------------CCC-----EECCCCCCCC---
T ss_conf 8887775788428999999999973976465431588----------------------883-----2204874457---
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66887024789998702320000003980246679999999817879935310007999999999999986543210013
Q 000474 1161 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1240 (1470)
Q Consensus 1161 ~~~~~~~~~l~~F~fLG~liakAl~d~~~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~ 1240 (1470)
. ..++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 107 ~-----~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~----------- 170 (374)
T 1nd7_A 107 N-----PDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDN----------- 170 (374)
T ss_dssp S-----TTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSS-----------
T ss_pred C-----HHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf 8-----779999999899987998659743785879999999389887889999619999865421359-----------
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHC
Q ss_conf 676100211322588533452100149----9-97121289996--4585728889999999976621899999999720
Q 000474 1241 SDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGF 1313 (1470)
Q Consensus 1241 ~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~ieL~pgG~--~VT~~N~~eYV~lv~~~~L~~gv~~Q~~AFr~GF 1313 (1470)
+..++ +|+|+|++. | ..++||+|||+ +||.+|+++||+++++|+|+.+|+.|++||++||
T Consensus 171 ------------~~~~~-~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf 237 (374)
T 1nd7_A 171 ------------NIEEC-GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237 (374)
T ss_dssp ------------CSCSS-CCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred ------------CHHHH-HCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ------------85253-11015887511478500474478996745231109999999999997020999999999864
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 11335433368899989865228987789888632118548779998689999999804999999976141228988899
Q 000474 1314 NQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPP 1393 (1470)
Q Consensus 1314 ~~V~p~~~L~~Fsp~EL~~LicG~~e~w~~e~L~~~~~~d~Gy~~~s~~I~~Fwevl~~fs~eerr~FLqFvTGs~rLPi 1393 (1470)
++|+|..+|++|+|+||+.|+||.++ +|+++|+++++|+| |+.+|++|+|||+||++|+++||++|||||||++|+|+
T Consensus 238 ~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~ 315 (374)
T 1nd7_A 238 NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPL 315 (374)
T ss_dssp HHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCT
T ss_pred HHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHEEECC-CCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 65089899846999999998569987-88898751069748-99898402549999986599999999999848998898
Q ss_pred CCCCCCC-----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9976688-----8157871489999888889999999999999677455672038899999999999999998098
Q 000474 1394 GGLAVLN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1464 (1470)
Q Consensus 1394 gGf~~L~-----p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~ 1464 (1470)
+||+.|. ++|+|.+.. ++++||+||||||+|+||+|+|+|+|++||++||+|++
T Consensus 316 ~Gf~~L~~~~gp~~f~I~~~~-----------------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 316 GGFAELMGSNGPQKFCIEKVG-----------------KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp TCGGGCEETTEECCEEEECCS-----------------CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred CCHHHCCCCCCCCCEEEEECC-----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 433221566788765997589-----------------89869778716598779898999999999999997149
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=1.00 E-value=1 Score=254.28 Aligned_cols=109 Identities=27% Similarity=0.454 Sum_probs=101.0
Q ss_pred CCCHHHHHHHCEECCCCCCCC----HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC--CCCCCCCCCEEEEECCCCCC
Q ss_conf 789888632118548779998----689999999804999999976141228988899--99766888157871489999
Q 000474 1340 LWEPAALAEHIKFDHGYTAKS----PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPP--GGLAVLNPKLTIVRKHSSTA 1413 (1470)
Q Consensus 1340 ~w~~e~L~~~~~~d~Gy~~~s----~~I~~Fwevl~~fs~eerr~FLqFvTGs~rLPi--gGf~~L~p~ltVv~k~~~~~ 1413 (1470)
..|+++|+++|+|+++|+.++ ++|+|||+||++|+++||++||||+||++|+|+ +||+.| |+|+|.. .
T Consensus 3 ~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~----~- 76 (118)
T 3pt3_A 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRP----P- 76 (118)
T ss_dssp ---------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEES----C-
T ss_pred CCCHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCEEEEC----C-
T ss_conf 038999983327718867775320569999999999799999999882743899888765675569-8479978----9-
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88888999999999999967745567203889999999999999999809844336
Q 000474 1414 PNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1469 (1470)
Q Consensus 1414 ~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~L 1469 (1470)
++++||+||||||+|+||+|+|+|+|++||++||++ .| |+|
T Consensus 77 -------------~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~g-fGf 117 (118)
T 3pt3_A 77 -------------DDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KN-FGF 117 (118)
T ss_dssp -------------CTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC--------
T ss_pred -------------CCCCCCCCEEHHCEEECCCCCCHHHHHHHHHHHHHH-CC-CCC
T ss_conf -------------988793200021263797989999999999999984-79-478
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=45.19 Aligned_cols=97 Identities=13% Similarity=0.256 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHH
Q ss_conf 79999999982168867989999999877217899999985301754789999871379832865999999998518034
Q 000474 132 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGT 211 (1470)
Q Consensus 132 ~LlPvL~evy~SSv~~sVR~k~L~ailKiv~~~~~e~L~eilk~~~iaSfLAsiLss~D~~lvi~ALqiaelLl~Klpdi 211 (1470)
.++|.|++.-..+-+..|+..+..++..|.+. +++.-+.+.+...+ ..|...|.+.+..+...|+...--|....+ .
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-~~e~~~~vv~~GaI-p~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~-~ 176 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGGAI-PAFISLLASPHAHISEQAVWALGNIAGDGS-A 176 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-H
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCH-HHHHHHHCCCCHHHHHHHHHHHHHHHHCCH-H
T ss_conf 88899999877899899999999999999649-99999999978879-999998869998999999999999971889-9
Q ss_pred HHHHHHHHCHHHHHHHHHHC
Q ss_conf 66566751399999997622
Q 000474 212 FSKMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 212 f~~~F~REGV~~eI~~La~~ 231 (1470)
++..+.+.|++..+-.+...
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~ 196 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAV 196 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCS
T ss_pred HHHHHHHCCCHHHHHHHHHH
T ss_conf 99999986981799999973
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=44.32 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCHHHH
Q ss_conf 999999982168867989999999877217899999985301754789999871379-8328659999999985180346
Q 000474 134 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKD-PHVLIPSLQIAEILMEKLPGTF 212 (1470)
Q Consensus 134 lPvL~evy~SSv~~sVR~k~L~ailKiv~~~~~e~L~eilk~~~iaSfLAsiLss~D-~~lvi~ALqiaelLl~Klpdif 212 (1470)
+|.|++...+. +..+|..++.++.++++.........+... .+-..|..+|.+.| +.+...|+.+..-|....++ +
T Consensus 76 l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~-~ 152 (528)
T 4b8j_A 76 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE-N 152 (528)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH-H
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH-H
T ss_conf 99999987699-999999999999998147779629999988-87999999847899789999999999999679988-7
Q ss_pred HHHHHHHCHHHHHHHHHH
Q ss_conf 656675139999999762
Q 000474 213 SKMFVREGVVHAVDQLIL 230 (1470)
Q Consensus 213 ~~~F~REGV~~eI~~La~ 230 (1470)
...+...|++..+-.+..
T Consensus 153 ~~~~~~~g~i~~L~~lL~ 170 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLG 170 (528)
T ss_dssp HHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHC
T ss_conf 999996886789998856
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=42.20 Aligned_cols=98 Identities=13% Similarity=0.259 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHH
Q ss_conf 87999999998216886798999999987721789999998530175478999987137983286599999999851803
Q 000474 131 MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG 210 (1470)
Q Consensus 131 ~~LlPvL~evy~SSv~~sVR~k~L~ailKiv~~~~~e~L~eilk~~~iaSfLAsiLss~D~~lvi~ALqiaelLl~Klpd 210 (1470)
..++|.|++....+-+..|+..+..++..|.+. +++.-..+.....+.. |..+|.+.+..+...|+.+.--|....+
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~-~~~~~~~vv~~Gaip~-Lv~LL~s~~~~v~e~A~~aL~nLa~~~~- 194 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGGAIPA-FISLLASPHAHISEQAVWALGNIAGAGS- 194 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHH-HHHHTTCSCHHHHHHHHHHHHHHHTTCH-
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCH-
T ss_conf 889999999876899899999999999999749-9999999998888999-9998769998999999999998744688-
Q ss_pred HHHHHHHHHCHHHHHHHHHHC
Q ss_conf 466566751399999997622
Q 000474 211 TFSKMFVREGVVHAVDQLILA 231 (1470)
Q Consensus 211 if~~~F~REGV~~eI~~La~~ 231 (1470)
.+...+.+.|++..+-.+...
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~ 215 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAV 215 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCS
T ss_pred HHHHHHHHCCCCHHHHHHHHC
T ss_conf 999999873872789998732
Done!