Query 000476
Match_columns 1470
No_of_seqs 845 out of 4591
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1082 Histone H3 (Lys9) meth 100.0 2.8E-30 6.1E-35 306.2 13.0 211 1224-1470 52-279 (364)
2 KOG4442 Clathrin coat binding 99.9 7.1E-23 1.5E-27 246.2 7.9 105 1353-1470 92-200 (729)
3 KOG1141 Predicted histone meth 99.9 3.2E-23 7E-28 248.0 3.2 255 1158-1438 567-855 (1262)
4 KOG1074 Transcriptional repres 99.9 1.8E-22 3.8E-27 245.0 7.1 215 847-1071 605-932 (958)
5 KOG2462 C2H2-type Zn-finger pr 99.9 2.3E-22 4.9E-27 221.7 5.1 138 880-1069 129-266 (279)
6 KOG2462 C2H2-type Zn-finger pr 99.9 3.4E-22 7.4E-27 220.3 5.4 111 915-1071 130-240 (279)
7 KOG3608 Zn finger proteins [Ge 99.8 1.5E-21 3.1E-26 218.2 6.5 250 752-1059 136-399 (467)
8 KOG3608 Zn finger proteins [Ge 99.8 2E-19 4.4E-24 201.2 5.0 215 752-1030 179-398 (467)
9 KOG3623 Homeobox transcription 99.8 3.7E-19 8E-24 212.4 5.6 82 983-1071 893-974 (1007)
10 KOG1079 Transcriptional repres 99.7 5.7E-19 1.2E-23 211.5 5.7 126 1296-1470 536-672 (739)
11 PF05033 Pre-SET: Pre-SET moti 99.7 7.8E-18 1.7E-22 165.8 7.7 103 1236-1371 1-103 (103)
12 KOG1074 Transcriptional repres 99.7 5.6E-18 1.2E-22 206.4 5.9 112 954-1070 606-733 (958)
13 smart00468 PreSET N-terminal t 99.6 2.3E-16 4.9E-21 154.3 8.1 96 1234-1363 1-98 (98)
14 KOG1141 Predicted histone meth 99.4 4.2E-13 9.1E-18 162.5 8.4 172 1229-1420 872-1054(1262)
15 KOG3576 Ovo and related transc 99.4 9.5E-14 2.1E-18 146.6 0.6 118 915-1045 117-239 (267)
16 KOG1080 Histone H3 (Lys4) meth 99.3 6.3E-13 1.4E-17 171.1 5.3 79 1379-1470 866-946 (1005)
17 KOG3576 Ovo and related transc 99.3 4.8E-13 1E-17 141.4 2.3 124 843-981 113-237 (267)
18 KOG3623 Homeobox transcription 99.2 6.1E-12 1.3E-16 151.7 2.1 123 882-1042 211-333 (1007)
19 KOG1083 Putative transcription 99.1 4.1E-12 8.8E-17 158.2 -2.1 91 1367-1470 1165-1257(1306)
20 smart00317 SET SET (Su(var)3-9 99.0 3.8E-10 8.2E-15 111.3 7.6 78 1380-1470 1-80 (116)
21 PLN03086 PRLI-interacting fact 98.8 4E-09 8.8E-14 129.9 7.7 141 848-1038 408-560 (567)
22 PLN03086 PRLI-interacting fact 98.8 6.2E-09 1.3E-13 128.4 7.9 141 882-1066 408-560 (567)
23 KOG1085 Predicted methyltransf 98.8 6.5E-09 1.4E-13 115.3 6.4 86 1375-1470 252-340 (392)
24 PHA00733 hypothetical protein 98.5 6.4E-08 1.4E-12 99.6 4.0 63 972-1043 62-124 (128)
25 KOG3993 Transcription factor ( 98.5 3.1E-08 6.6E-13 115.1 0.1 26 847-873 295-320 (500)
26 PHA00733 hypothetical protein 98.4 2.1E-07 4.5E-12 95.9 4.3 93 969-1068 25-121 (128)
27 KOG3993 Transcription factor ( 98.3 1.8E-07 3.9E-12 108.9 0.2 88 847-940 267-381 (500)
28 PHA02768 hypothetical protein; 98.2 4.8E-07 1E-11 79.0 0.7 44 1018-1063 5-48 (55)
29 PHA02768 hypothetical protein; 98.0 3.9E-06 8.3E-11 73.5 2.2 44 984-1035 5-48 (55)
30 COG2940 Proteins containing SE 97.9 2.3E-06 4.9E-11 106.5 0.1 105 1355-1470 308-412 (480)
31 PF13465 zf-H2C2_2: Zinc-finge 97.6 2.1E-05 4.7E-10 58.9 1.5 24 972-995 2-25 (26)
32 PHA00732 hypothetical protein 97.4 0.00013 2.7E-09 69.3 3.3 47 984-1042 1-48 (79)
33 PHA00616 hypothetical protein 97.4 4.8E-05 1E-09 63.8 0.3 33 1018-1050 1-33 (44)
34 PF05605 zf-Di19: Drought indu 97.2 0.00025 5.3E-09 62.5 3.2 52 984-1042 2-53 (54)
35 PF13465 zf-H2C2_2: Zinc-finge 97.2 0.00017 3.7E-09 54.1 1.8 24 1000-1029 2-25 (26)
36 PF05605 zf-Di19: Drought indu 97.1 0.00042 9.1E-09 61.0 3.0 51 848-905 3-53 (54)
37 PHA00732 hypothetical protein 97.1 0.00039 8.5E-09 66.0 3.0 47 1018-1070 1-48 (79)
38 COG5189 SFP1 Putative transcri 96.7 0.00075 1.6E-08 76.9 2.3 57 982-1038 347-418 (423)
39 PHA00616 hypothetical protein 96.7 0.00055 1.2E-08 57.6 0.9 34 984-1023 1-34 (44)
40 COG5189 SFP1 Putative transcri 96.3 0.0015 3.3E-08 74.5 1.6 71 844-935 346-418 (423)
41 PF00096 zf-C2H2: Zinc finger, 96.0 0.0021 4.6E-08 46.4 0.4 22 1019-1040 1-22 (23)
42 PF12756 zf-C2H2_2: C2H2 type 95.9 0.0033 7.2E-08 60.8 1.5 73 849-938 1-73 (100)
43 KOG2231 Predicted E3 ubiquitin 95.8 0.015 3.2E-07 73.9 6.9 108 848-980 116-236 (669)
44 PF12756 zf-C2H2_2: C2H2 type 95.7 0.0053 1.1E-07 59.4 2.0 71 917-1005 1-71 (100)
45 cd01395 HMT_MBD Methyl-CpG bin 95.7 0.0022 4.8E-08 57.7 -0.7 37 1184-1220 1-49 (60)
46 KOG2231 Predicted E3 ubiquitin 95.7 0.012 2.6E-07 74.7 5.3 145 881-1050 115-275 (669)
47 PF00096 zf-C2H2: Zinc finger, 95.1 0.0094 2E-07 43.0 1.0 23 985-1008 1-23 (23)
48 PF13894 zf-C2H2_4: C2H2-type 95.0 0.009 2E-07 42.8 0.7 23 1019-1041 1-23 (24)
49 PF13912 zf-C2H2_6: C2H2-type 94.7 0.014 3.1E-07 43.7 1.3 25 1018-1042 1-25 (27)
50 COG5048 FOG: Zn-finger [Genera 94.6 0.027 5.8E-07 67.5 3.8 62 989-1054 393-454 (467)
51 PF13894 zf-C2H2_4: C2H2-type 94.6 0.015 3.2E-07 41.7 1.0 14 921-934 6-19 (24)
52 PF13912 zf-C2H2_6: C2H2-type 93.8 0.025 5.4E-07 42.4 0.8 22 882-903 2-23 (27)
53 KOG1146 Homeobox protein [Gene 93.6 0.039 8.4E-07 73.6 2.7 159 884-1069 439-641 (1406)
54 PF09237 GAGA: GAGA factor; I 93.3 0.035 7.6E-07 48.1 1.0 31 1016-1046 22-52 (54)
55 KOG1146 Homeobox protein [Gene 92.8 0.032 6.8E-07 74.4 0.1 151 849-1008 438-641 (1406)
56 COG5236 Uncharacterized conser 92.7 0.072 1.6E-06 61.8 2.7 126 915-1066 151-301 (493)
57 smart00355 ZnF_C2H2 zinc finge 92.3 0.068 1.5E-06 38.6 1.3 18 986-1003 2-19 (26)
58 COG5048 FOG: Zn-finger [Genera 92.2 0.099 2.1E-06 62.6 3.2 169 846-1037 288-464 (467)
59 KOG1081 Transcription factor N 92.0 0.049 1.1E-06 67.8 0.3 89 1353-1470 287-378 (463)
60 PRK04860 hypothetical protein; 91.5 0.079 1.7E-06 57.1 1.2 27 1030-1056 127-153 (160)
61 cd05162 PWWP The PWWP domain, 90.1 0.28 6.1E-06 47.3 3.4 60 157-220 6-66 (87)
62 smart00570 AWS associated with 90.0 0.13 2.8E-06 45.1 1.0 26 1352-1377 25-50 (51)
63 smart00355 ZnF_C2H2 zinc finge 89.9 0.21 4.6E-06 36.0 1.9 24 1019-1042 1-24 (26)
64 PRK04860 hypothetical protein; 89.7 0.16 3.5E-06 54.8 1.6 38 984-1031 119-156 (160)
65 COG5236 Uncharacterized conser 89.7 0.39 8.5E-06 56.1 4.6 138 848-1010 152-307 (493)
66 cd05840 SPBC215_ISWI_like The 88.7 0.33 7.1E-06 47.9 2.7 59 157-216 6-65 (93)
67 PF13909 zf-H2C2_5: C2H2-type 87.8 0.19 4.1E-06 36.8 0.4 22 1019-1041 1-22 (24)
68 PF09237 GAGA: GAGA factor; I 87.8 0.23 4.9E-06 43.3 0.9 29 880-908 23-51 (54)
69 PF12874 zf-met: Zinc-finger o 86.7 0.25 5.5E-06 36.3 0.5 21 1019-1039 1-21 (25)
70 KOG2785 C2H2-type Zn-finger pr 85.0 0.79 1.7E-05 54.8 3.7 52 1016-1067 164-241 (390)
71 KOG2482 Predicted C2H2-type Zn 84.8 0.86 1.9E-05 53.5 3.8 52 1019-1070 280-358 (423)
72 PF12874 zf-met: Zinc-finger o 84.1 0.42 9.2E-06 35.1 0.7 19 884-902 3-21 (25)
73 PF13909 zf-H2C2_5: C2H2-type 83.7 0.47 1E-05 34.7 0.7 19 884-903 3-21 (24)
74 PF12171 zf-C2H2_jaz: Zinc-fin 83.5 0.66 1.4E-05 35.1 1.5 22 1019-1040 2-23 (27)
75 PF11722 zf-TRM13_CCCH: CCCH z 83.3 0.38 8.3E-06 38.0 0.2 29 533-561 2-30 (31)
76 KOG4173 Alpha-SNAP protein [In 83.2 0.27 5.9E-06 53.9 -0.9 91 880-1010 78-172 (253)
77 KOG2785 C2H2-type Zn-finger pr 81.7 2.2 4.8E-05 51.2 5.6 56 983-1039 165-241 (390)
78 PF12171 zf-C2H2_jaz: Zinc-fin 80.6 0.79 1.7E-05 34.6 1.0 21 882-902 2-22 (27)
79 KOG4173 Alpha-SNAP protein [In 78.3 0.94 2E-05 49.9 1.1 93 952-1048 78-177 (253)
80 KOG2482 Predicted C2H2-type Zn 75.4 2.2 4.8E-05 50.3 3.0 21 1019-1039 335-355 (423)
81 PF00856 SET: SET domain; Int 74.8 1.8 3.9E-05 44.4 2.0 31 1390-1420 1-31 (162)
82 KOG2893 Zn finger protein [Gen 74.1 1.2 2.7E-05 49.7 0.6 46 987-1042 13-59 (341)
83 KOG2461 Transcription factor B 69.4 3.9 8.4E-05 50.4 3.4 75 1377-1468 26-105 (396)
84 cd05837 MSH6_like The PWWP dom 66.4 6.2 0.00013 40.1 3.7 63 157-219 8-71 (110)
85 smart00451 ZnF_U1 U1-like zinc 61.3 3.9 8.6E-05 32.3 0.9 21 1018-1038 3-23 (35)
86 PF13913 zf-C2HC_2: zinc-finge 60.1 4.8 0.00011 30.2 1.2 16 884-900 5-20 (25)
87 smart00391 MBD Methyl-CpG bind 59.1 3 6.5E-05 39.8 -0.1 38 1183-1220 2-53 (77)
88 KOG1280 Uncharacterized conser 59.1 7.4 0.00016 46.3 3.0 27 847-873 79-105 (381)
89 smart00451 ZnF_U1 U1-like zinc 56.7 6.7 0.00015 31.0 1.6 22 915-936 3-24 (35)
90 PF13913 zf-C2HC_2: zinc-finge 56.0 7.3 0.00016 29.3 1.5 21 915-936 2-22 (25)
91 PF09986 DUF2225: Uncharacteri 56.0 4.4 9.5E-05 45.9 0.5 21 983-1003 4-24 (214)
92 COG4049 Uncharacterized protei 56.0 4.6 9.9E-05 36.0 0.5 33 978-1010 11-43 (65)
93 TIGR00622 ssl1 transcription f 52.0 21 0.00046 36.5 4.5 83 847-940 15-105 (112)
94 KOG2893 Zn finger protein [Gen 51.7 6.2 0.00013 44.5 0.8 41 850-900 13-53 (341)
95 TIGR00622 ssl1 transcription f 51.1 25 0.00054 36.1 4.8 20 915-934 15-34 (112)
96 PF12013 DUF3505: Protein of u 49.0 19 0.00042 36.2 3.8 27 1017-1043 79-109 (109)
97 cd00122 MBD MeCP2, MBD1, MBD2, 45.3 6.7 0.00015 35.7 -0.1 27 1194-1220 23-50 (62)
98 KOG2186 Cell growth-regulating 45.1 11 0.00023 43.4 1.3 46 882-936 4-49 (276)
99 cd01397 HAT_MBD Methyl-CpG bin 41.7 9.3 0.0002 36.2 0.2 26 1194-1219 23-49 (73)
100 PHA00626 hypothetical protein 41.6 11 0.00023 33.9 0.5 15 1017-1031 22-36 (59)
101 smart00293 PWWP domain with co 41.4 29 0.00063 31.7 3.3 56 157-215 6-62 (63)
102 PF00855 PWWP: PWWP domain; I 40.1 28 0.0006 33.1 3.2 56 157-219 6-62 (86)
103 COG4049 Uncharacterized protei 37.5 14 0.0003 33.1 0.6 32 841-872 11-42 (65)
104 KOG3813 Uncharacterized conser 37.4 16 0.00035 45.5 1.3 19 1299-1318 307-325 (640)
105 cd05838 WHSC1_related The PWWP 36.9 27 0.00058 34.7 2.6 54 158-214 7-61 (95)
106 cd00350 rubredoxin_like Rubred 36.6 20 0.00044 28.6 1.4 8 1018-1025 17-24 (33)
107 PF09538 FYDLN_acid: Protein o 34.1 24 0.00051 36.1 1.7 14 1018-1031 26-39 (108)
108 PF09986 DUF2225: Uncharacteri 33.0 18 0.00038 41.1 0.7 42 1016-1057 3-59 (214)
109 PRK14890 putative Zn-ribbon RN 31.0 32 0.00068 31.4 1.8 31 984-1026 25-56 (59)
110 PF12013 DUF3505: Protein of u 30.2 42 0.00091 33.8 2.8 25 915-939 80-108 (109)
111 smart00531 TFIIE Transcription 29.4 45 0.00098 35.6 3.0 38 981-1028 96-133 (147)
112 TIGR00373 conserved hypothetic 29.3 36 0.00078 36.9 2.3 42 972-1028 97-138 (158)
113 cd05839 BR140_related The PWWP 29.1 83 0.0018 32.4 4.6 61 157-217 6-80 (111)
114 KOG2461 Transcription factor B 29.0 69 0.0015 39.8 4.8 79 970-1054 317-395 (396)
115 KOG2593 Transcription initiati 28.8 34 0.00075 42.2 2.2 48 765-814 113-160 (436)
116 KOG2186 Cell growth-regulating 28.7 28 0.0006 40.2 1.3 51 847-906 3-53 (276)
117 PF13719 zinc_ribbon_5: zinc-r 27.7 26 0.00055 28.8 0.6 12 1017-1028 24-35 (37)
118 COG2888 Predicted Zn-ribbon RN 27.7 39 0.00085 30.9 1.8 32 984-1026 27-58 (61)
119 cd00729 rubredoxin_SM Rubredox 27.1 36 0.00078 27.6 1.3 10 985-994 3-12 (34)
120 TIGR02098 MJ0042_CXXC MJ0042 f 27.0 28 0.0006 28.4 0.7 34 985-1029 3-36 (38)
121 PF14353 CpXC: CpXC protein 26.7 37 0.0008 35.2 1.7 49 986-1041 3-61 (128)
122 COG1198 PriA Primosomal protei 26.6 41 0.0009 44.7 2.5 33 142-174 16-49 (730)
123 PF13891 zf-C3Hc3H: Potential 26.4 21 0.00046 32.9 -0.1 35 587-622 3-37 (65)
124 smart00531 TFIIE Transcription 25.9 53 0.0012 35.0 2.8 41 841-891 93-133 (147)
125 COG1997 RPL43A Ribosomal prote 25.6 32 0.0007 33.7 0.9 13 1018-1030 53-65 (89)
126 PF02892 zf-BED: BED zinc fing 25.6 42 0.00091 28.2 1.6 27 982-1008 14-44 (45)
127 TIGR00373 conserved hypothetic 24.3 49 0.0011 35.8 2.2 42 835-891 97-138 (158)
128 PF11722 zf-TRM13_CCCH: CCCH z 24.0 43 0.00093 26.8 1.2 21 589-609 11-31 (31)
129 PF13717 zinc_ribbon_4: zinc-r 23.7 33 0.00072 28.1 0.6 33 985-1028 3-35 (36)
130 PRK06266 transcription initiat 23.5 53 0.0012 36.3 2.3 33 981-1028 114-146 (178)
131 cd05834 HDGF_related The PWWP 22.6 1.1E+02 0.0023 29.8 3.9 52 157-218 8-60 (83)
132 PRK00464 nrdR transcriptional 22.6 33 0.00072 37.1 0.5 40 882-927 1-40 (154)
133 TIGR02300 FYDLN_acid conserved 22.4 54 0.0012 34.3 1.9 15 1017-1031 25-39 (129)
134 COG1592 Rubrerythrin [Energy p 21.2 56 0.0012 35.9 1.8 22 985-1025 135-156 (166)
135 PRK06266 transcription initiat 21.1 61 0.0013 35.9 2.1 36 842-892 112-147 (178)
136 KOG2593 Transcription initiati 20.6 68 0.0015 39.8 2.6 42 977-1027 121-162 (436)
137 COG5151 SSL1 RNA polymerase II 20.2 61 0.0013 38.3 2.0 82 847-939 322-411 (421)
No 1
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.8e-30 Score=306.23 Aligned_cols=211 Identities=32% Similarity=0.494 Sum_probs=159.1
Q ss_pred CCcCCccceEeecCCCCCCCCCeeEeeCCCcccccccCCCCCCcccccCCCCCCCceecccccCCCCCCCcccCCCCCcc
Q 000476 1224 RKPLLRGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCA 1303 (1470)
Q Consensus 1224 ~~~~~~~~vi~~DIS~G~E~vPV~~vnd~D~~~~~~~~g~~~~~~~~~~~~P~~~F~YIt~ni~~~~~~ld~~~~~~gC~ 1303 (1470)
...+.+...+..||+.|.|++||+.+|++|.. .| ..|+|++..++.+. .........||.
T Consensus 52 ~~~~~~~~~~~~d~~~~~e~~~v~~~n~id~~------------------~~-~~f~y~~~~~~~~~-~~~~~~~~~~c~ 111 (364)
T KOG1082|consen 52 DKDKLEAKSELEDIALGSENLPVPLVNRIDED------------------AP-LYFQYIATEIVDPG-ELSDCENSTGCR 111 (364)
T ss_pred cccccccccccccccCccccCceeeeeeccCC------------------cc-ccceeccccccCcc-ccccCccccCCC
Confidence 34566777899999999999999999999863 12 58999999988885 222234578999
Q ss_pred cCCCCccCC---CCCccccccccccccccccCCCCCCCcccCCCCc--eeeccCceeeccCCCCCCCCCCCCccccccce
Q 000476 1304 CANSTCFPE---TCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGR--VILEEGYLIYECNHMCSCDRTCPNRVLQNGVR 1378 (1470)
Q Consensus 1304 C~~~~C~~~---~C~C~~l~~~~~~~~~~~~g~~~~g~~~Y~~~G~--l~~~~~~~IyECn~~C~C~~~C~NRvvq~g~~ 1378 (1470)
|.+ .|... .|.|... ..+.++|..+|. .....+.+||||+..|+|+.+|.|||+|+|++
T Consensus 112 C~~-~~~~~~~~~C~C~~~---------------n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~ 175 (364)
T KOG1082|consen 112 CCS-SCSSVLPLTCLCERH---------------NGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQ 175 (364)
T ss_pred ccC-CCCCCCCccccChHh---------------hCCccccccCCccccccccCccccccccCCCCCCcCcchhhccccc
Confidence 986 34332 2777532 345677877763 33456779999999999999999999999999
Q ss_pred eeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccC----CCCcEEEEeCcccccc--------ccc
Q 000476 1379 VKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGR----DGCGYMLNIGAHINDM--------GRL 1446 (1470)
Q Consensus 1379 ~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~----~~~~Ylf~l~~~~~~~--------~~~ 1446 (1470)
.+|+||+|..+|||||++++||+|+|||||+||+++..++++|...+.. .+..++++.+...... ...
T Consensus 176 ~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (364)
T KOG1082|consen 176 FHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLP 255 (364)
T ss_pred cceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999988533221 1122233332211000 001
Q ss_pred cCCCCcEEEeccCCCChhccccCC
Q 000476 1447 IEGQVRYVIDATKYGNVSRFINHR 1470 (1470)
Q Consensus 1447 ~~~~~~~~IDA~~~GNvaRFINHS 1470 (1470)
......++|||+.+|||+||||||
T Consensus 256 ~~~~~~~~ida~~~GNv~RfinHS 279 (364)
T KOG1082|consen 256 GGPGRELLIDAKPHGNVARFINHS 279 (364)
T ss_pred cCCCcceEEchhhcccccccccCC
Confidence 122468999999999999999998
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.1e-23 Score=246.24 Aligned_cols=105 Identities=45% Similarity=0.750 Sum_probs=96.8
Q ss_pred ceeeccCC-CCC-CCCCCCCccccccceeeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCC-
Q 000476 1353 YLIYECNH-MCS-CDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG- 1429 (1470)
Q Consensus 1353 ~~IyECn~-~C~-C~~~C~NRvvq~g~~~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~- 1429 (1470)
....||++ .|. |+..|.|+.+|+....+++||+|+.+||||||..+||+|+||.||.||||+.+|+++|...|+.++
T Consensus 92 ~t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~ 171 (729)
T KOG4442|consen 92 MTSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGI 171 (729)
T ss_pred hhhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCC
Confidence 34569987 999 999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred -CcEEEEeCccccccccccCCCCcEEEeccCCCChhccccCC
Q 000476 1430 -CGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHR 1470 (1470)
Q Consensus 1430 -~~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHS 1470 (1470)
+.|+|.|.. .++||||.+||.|||||||
T Consensus 172 kh~Yfm~L~~-------------~e~IDAT~KGnlaRFiNHS 200 (729)
T KOG4442|consen 172 KHYYFMALQG-------------GEYIDATKKGNLARFINHS 200 (729)
T ss_pred ceEEEEEecC-------------CceecccccCcHHHhhcCC
Confidence 347766654 6899999999999999998
No 3
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.87 E-value=3.2e-23 Score=247.98 Aligned_cols=255 Identities=21% Similarity=0.259 Sum_probs=187.0
Q ss_pred cccceeeeccccCCCcccCCC--CCCCCCCC-CCcccC-----------CcccccccCCCCCCc-cccccceeee-ccCc
Q 000476 1158 IQVEWHREGFLCSNGCKIFKD--PHLPPHLE-PLPSVS-----------AGIRSSDSSDFVNNQ-WEVDECHCII-DSRH 1221 (1470)
Q Consensus 1158 i~~~wh~~~~~C~~g~~~~~~--~~~~~pl~-p~~~~~-----------~~~k~v~~~~p~~~~-w~~~e~h~~l-~~~~ 1221 (1470)
+-+-.|.|...|-+.-....+ ..+-.||+ |..+.| ...-.|.|.+|||.. +.|.|+.+|| +.++
T Consensus 567 lsy~sh~cs~acl~~~~~~~~~~~~g~npl~lp~~~~F~r~~a~~rs~~~~~fhv~yktpcg~~lr~~~el~ryL~et~c 646 (1262)
T KOG1141|consen 567 LSYFSHKCSIACLNAAQIAIMVGQPGGNPLNLPYFLTFHRIRASHRSAYIRDFHVEYKTPCGMPLRMRIELYRYLVETRC 646 (1262)
T ss_pred ccccchhhHHHHHhccchhhhccCCCCCccccceEEEeeehhhhhhhhhhhcceeeccCCCccchHHHHHHHHHHHHhcC
Confidence 344567777777655554443 56778999 988888 234468999999988 8888866544 3321
Q ss_pred -------c---------CCCcCCccceEeecCCCCCCCCCeeEeeCCCcccccccCCCCCCcccccCCCCCCCceecccc
Q 000476 1222 -------L---------GRKPLLRGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKP 1285 (1470)
Q Consensus 1222 -------~---------~~~~~~~~~vi~~DIS~G~E~vPV~~vnd~D~~~~~~~~g~~~~~~~~~~~~P~~~F~YIt~n 1285 (1470)
| +..++.++++.|-||++|+|.|||.++|+.|. .|++.|.|-.+.
T Consensus 647 ~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g~e~vpis~~neids-------------------~~lpq~ay~K~~ 707 (1262)
T KOG1141|consen 647 KFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCGREHVPISEKNEIDS-------------------HRLPQAAYKKHM 707 (1262)
T ss_pred cEEEEeecccchheeecccCCCcCCcceeccccCCccccccceeecccC-------------------cCCccchhheee
Confidence 1 23456789999999999999999999999884 344689999988
Q ss_pred cCCCCCCC-cccCCCCCcccCCCCccCCCCCccccccccccccccccCCCCCCCcccCCCCceeeccCceeeccCCCCCC
Q 000476 1286 LLDQSLDL-DAESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSC 1364 (1470)
Q Consensus 1286 i~~~~~~l-d~~~~~~gC~C~~~~C~~~~C~C~~l~~~~~~~~~~~~g~~~~g~~~Y~~~G~l~~~~~~~IyECn~~C~C 1364 (1470)
|.+...-. ....+..+|+|.+||-+...|.|.++....-......+-. ...++.|. |++-..+..+|||+.+|+|
T Consensus 708 ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~-~t~gykyK---Rl~e~~ptg~yEc~k~ckc 783 (1262)
T KOG1141|consen 708 IPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVA-STNGYKYK---RLIEIRPTGPYECLKACKC 783 (1262)
T ss_pred ccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCcccc-cCcchhhH---HHHHhcCCCHHHHHHhhcc
Confidence 87765322 2356889999999877778999988643221111100111 11223342 3444456789999999999
Q ss_pred CC-CCCCccccccceeeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCCCcEEEEeCc
Q 000476 1365 DR-TCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGA 1438 (1470)
Q Consensus 1365 ~~-~C~NRvvq~g~~~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~~~Ylf~l~~ 1438 (1470)
.+ .|.||++|+|.+++|++|+|..+|||+|++++|.+|.|||.|.|-+++.+-++.-+-. .+..|+..||.
T Consensus 784 ~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks~~~---~~~~~~~~id~ 855 (1262)
T KOG1141|consen 784 CGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKSEYI---HVTRSLLTIDC 855 (1262)
T ss_pred CcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchhhhhc---ccchhhhcccc
Confidence 87 5999999999999999999999999999999999999999999999998877755422 23457777665
No 4
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.86 E-value=1.8e-22 Score=244.97 Aligned_cols=215 Identities=15% Similarity=0.162 Sum_probs=166.2
Q ss_pred ccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcccccchhhccccccc---CCCC
Q 000476 847 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCI---PCGS 923 (1470)
Q Consensus 847 pykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~---~CgK 923 (1470)
|-+|-+|-+....++.|+.| .++|++| |||+|.+||+.|.++.+|+.||-.|....+.. ..|.|+ +|-+
T Consensus 605 PNqCiiC~rVlSC~saLqmH-yrtHtGE-----RPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R--~q~ScP~~~ic~~ 676 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMH-YRTHTGE-----RPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR--VQFSCPSTFICQK 676 (958)
T ss_pred ccceeeeeecccchhhhhhh-hhcccCc-----CccccccccchhccccchhhcccccccCcccc--ccccCCchhhhcc
Confidence 57899999999999999999 8999999 99999999999999999999999998765432 479999 9999
Q ss_pred CCCChhhhhhhhhhhcccc-ccchhhhhcccccccccCCcccccCChhHHHhhhhhc----------------CCcc---
Q 000476 924 HFGNTEELWLHVQSVHAID-FKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENL----------------GSIR--- 983 (1470)
Q Consensus 924 ~F~sks~L~~H~k~vHsge-f~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~H----------------tgeK--- 983 (1470)
.|.+.-.|.+|++ +|.+. .............-+.|+.|.+.|.....+..|+-.| +.+.
T Consensus 677 kftn~V~lpQhIr-iH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~t 755 (958)
T KOG1074|consen 677 KFTNAVTLPQHIR-IHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVT 755 (958)
T ss_pred cccccccccceEE-eecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccC
Confidence 9999999999986 88744 1100000123333445555588776655555555444 3333
Q ss_pred -cccccccCCccCChhhHHHHhhhhc-----------------------cCCCCC-------------------------
Q 000476 984 -KFICRFCGLKFDLLPDLGRHHQAAH-----------------------MGPNLV------------------------- 1014 (1470)
Q Consensus 984 -pfkC~~CgKsF~sks~LkrH~~r~H-----------------------tge~l~------------------------- 1014 (1470)
+..|..|+..+.....+..+ -..+ ++++..
T Consensus 756 p~~~e~~~~~~~~~e~~i~~~-g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~ 834 (958)
T KOG1074|consen 756 PPPPENSCGRELEGEMAISVR-GSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQET 834 (958)
T ss_pred CCccccccccccCcccccccc-cchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccc
Confidence 67788999998877766665 2222 111000
Q ss_pred -----------------------------------------CCCCcccCCCCcccCChhhhhhhcccccCCCccccCCCC
Q 000476 1015 -----------------------------------------NSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRN 1053 (1470)
Q Consensus 1015 -----------------------------------------~eKpykC~iCgKsF~~ks~L~~H~r~H~gekpy~C~~Cg 1053 (1470)
......|.+|++.|...+.|..|||+|+|+|||.|.+|+
T Consensus 835 ~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~ 914 (958)
T KOG1074|consen 835 SMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCE 914 (958)
T ss_pred cccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhh
Confidence 022478999999999999999999999999999999999
Q ss_pred CcCCChHHHHhhcCCCCC
Q 000476 1054 RGAAGMKKRIQTLKPLAS 1071 (1470)
Q Consensus 1054 ksF~~~s~L~kHkksh~~ 1071 (1470)
++|..+..|+.|+.+|..
T Consensus 915 ~aFttrgnLKvHMgtH~w 932 (958)
T KOG1074|consen 915 EAFTTRGNLKVHMGTHMW 932 (958)
T ss_pred hhhhhhhhhhhhhccccc
Confidence 999999999999998873
No 5
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.85 E-value=2.3e-22 Score=221.74 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=101.0
Q ss_pred CcccccccCccccChhhhhhhhhhcccccchhhcccccccCCCCCCCChhhhhhhhhhhccccccchhhhhccccccccc
Q 000476 880 RGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED 959 (1470)
Q Consensus 880 KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~C 959 (1470)
..|+|+.|||.+.+.++|.+|.++|..... .+.+.|++|||.|.+...|+.|++ +|+
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s---~ka~~C~~C~K~YvSmpALkMHir-TH~------------------- 185 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDS---KKAFSCKYCGKVYVSMPALKMHIR-THT------------------- 185 (279)
T ss_pred Cceeccccccccccccccchhhcccccccc---cccccCCCCCceeeehHHHhhHhh-ccC-------------------
Confidence 457777777777777777777777765432 246778888888877777777764 554
Q ss_pred CCcccccCChhHHHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcc
Q 000476 960 SPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPR 1039 (1470)
Q Consensus 960 p~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r 1039 (1470)
-+++|.+|||.|.+.--|+-| .|+||| ||||.|+.|+|+|..+++|+.||+
T Consensus 186 -----------------------l~c~C~iCGKaFSRPWLLQGH-iRTHTG-----EKPF~C~hC~kAFADRSNLRAHmQ 236 (279)
T KOG2462|consen 186 -----------------------LPCECGICGKAFSRPWLLQGH-IRTHTG-----EKPFSCPHCGKAFADRSNLRAHMQ 236 (279)
T ss_pred -----------------------CCcccccccccccchHHhhcc-cccccC-----CCCccCCcccchhcchHHHHHHHH
Confidence 356777777777777777777 777777 777777777777777777777777
Q ss_pred cccCCCccccCCCCCcCCChHHHHhhcCCC
Q 000476 1040 FKKGLGAVSYRIRNRGAAGMKKRIQTLKPL 1069 (1470)
Q Consensus 1040 ~H~gekpy~C~~CgksF~~~s~L~kHkksh 1069 (1470)
+|.+.|+|+|..|+|+|+.++.|.+|..+-
T Consensus 237 THS~~K~~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 237 THSDVKKHQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred hhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence 777777777777777777777777777643
No 6
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.85 E-value=3.4e-22 Score=220.33 Aligned_cols=111 Identities=23% Similarity=0.312 Sum_probs=97.7
Q ss_pred cccccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcccccCChhHHHhhhhhcCCcccccccccCCcc
Q 000476 915 LQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKF 994 (1470)
Q Consensus 915 pfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF 994 (1470)
.|+|+.||+.+.+.+.|.+|.+ .|.. .- ..+.|.|++|||.|
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ-~H~~----------------~~---------------------s~ka~~C~~C~K~Y 171 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQ-THRS----------------LD---------------------SKKAFSCKYCGKVY 171 (279)
T ss_pred ceeccccccccccccccchhhc-cccc----------------cc---------------------ccccccCCCCCcee
Confidence 5778888888888888888843 4531 11 14679999999999
Q ss_pred CChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccccCCCccccCCCCCcCCChHHHHhhcCCCCC
Q 000476 995 DLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQTLKPLAS 1071 (1470)
Q Consensus 995 ~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~gekpy~C~~CgksF~~~s~L~kHkksh~~ 1071 (1470)
.+...|+.| .++|+- +++|.+|||.|.+.+-|+-|+|+|+|||||.|..|+|+|+.++.|+.|+.+|..
T Consensus 172 vSmpALkMH-irTH~l-------~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~ 240 (279)
T KOG2462|consen 172 VSMPALKMH-IRTHTL-------PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSD 240 (279)
T ss_pred eehHHHhhH-hhccCC-------CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcC
Confidence 999999999 999996 899999999999999999999999999999999999999999999999999873
No 7
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.84 E-value=1.5e-21 Score=218.20 Aligned_cols=250 Identities=15% Similarity=0.209 Sum_probs=199.6
Q ss_pred cccccchhhhhhCHHHHHHhhccCCccccccccccccccccCChHHHHhhhhc-cCc-ccCCC--CC--CCCCccccccc
Q 000476 752 LHLHLACELFYKLLKSILSLRNPVPMEIQFQWALSEASKDAGIGEFLMKLVCC-EKE-RLSKT--WG--FDANENAHVSS 825 (1470)
Q Consensus 752 ~~lC~~C~k~F~~~~sL~~H~r~H~~ek~y~~kC~~CgK~F~s~~~L~k~iHs-eK~-y~C~~--Cg--F~~~s~~~v~s 825 (1470)
.+.+..|+..|.+...+..|.-.|..--.| +..| +-. ++| +.|.. |. |..+..
T Consensus 136 ~C~WedCe~~F~s~~ef~dHV~~H~l~cey-------d~~~---------~~~D~~pv~~C~W~~Ct~~~~~k~~----- 194 (467)
T KOG3608|consen 136 RCGWEDCEREFVSIVEFQDHVVKHALFCEY-------DIQK---------TPEDERPVTMCNWAMCTKHMGNKYR----- 194 (467)
T ss_pred ccChhhcCCcccCHHHHHHHHHHhhhhhhh-------hhhh---------CCCCCCceeeccchhhhhhhccHHH-----
Confidence 456678999999999999998766532111 1111 111 222 44443 22 444444
Q ss_pred ccccccchhhHHHhcccCCCCccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcc
Q 000476 826 SVVEDSAVLPLAIAGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERH 905 (1470)
Q Consensus 826 ~~~e~s~~~L~~H~r~H~gekpykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hh 905 (1470)
|++|++.|+++|...|+.|+.-|.++..|-.|+++.-.-. ..+|+|..|.|.|.+...|..|+..|-
T Consensus 195 ---------LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~----~n~fqC~~C~KrFaTeklL~~Hv~rHv 261 (467)
T KOG3608|consen 195 ---------LREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELN----TNSFQCAQCFKRFATEKLLKSHVVRHV 261 (467)
T ss_pred ---------HHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhc----CCchHHHHHHHHHhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999965432221 268999999999999999999999886
Q ss_pred cccchhhcccccccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcccccCChhHHHhhhhhcCCcccc
Q 000476 906 HVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKF 985 (1470)
Q Consensus 906 gek~~~~~kpfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~HtgeKpf 985 (1470)
. -|+|+.|+.+....+.|..||+..|... +||+|+.| ...|.+.+.|..|..+|+ +-.|
T Consensus 262 n--------~ykCplCdmtc~~~ssL~~H~r~rHs~d---------kpfKCd~C---d~~c~~esdL~kH~~~HS-~~~y 320 (467)
T KOG3608|consen 262 N--------CYKCPLCDMTCSSASSLTTHIRYRHSKD---------KPFKCDEC---DTRCVRESDLAKHVQVHS-KTVY 320 (467)
T ss_pred h--------cccccccccCCCChHHHHHHHHhhhccC---------CCccccch---hhhhccHHHHHHHHHhcc-ccce
Confidence 5 6899999999999999999999889876 99999999 999999999999999998 6789
Q ss_pred cccc--cCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccccCC------CccccCCCCCcCC
Q 000476 986 ICRF--CGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGL------GAVSYRIRNRGAA 1057 (1470)
Q Consensus 986 kC~~--CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~ge------kpy~C~~CgksF~ 1057 (1470)
.|.. |..+|++...|++|++.+|.|.+ +-+|.|..|.+.|++..+|.+|++..++. +.|..+.|..+|-
T Consensus 321 ~C~h~~C~~s~r~~~q~~~H~~evhEg~n---p~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~m 397 (467)
T KOG3608|consen 321 QCEHPDCHYSVRTYTQMRRHFLEVHEGNN---PILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFM 397 (467)
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHhccCCC---CCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCcee
Confidence 9988 99999999999999888887743 56899999999999999999999555443 5677777877775
Q ss_pred Ch
Q 000476 1058 GM 1059 (1470)
Q Consensus 1058 ~~ 1059 (1470)
++
T Consensus 398 RL 399 (467)
T KOG3608|consen 398 RL 399 (467)
T ss_pred ee
Confidence 43
No 8
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.76 E-value=2e-19 Score=201.20 Aligned_cols=215 Identities=15% Similarity=0.164 Sum_probs=171.3
Q ss_pred cccccchhhhhhCHHHHHHhhccCCccccccccccccccccCChHHHHhhhhccCcccCCCCCCCCCccccccccccccc
Q 000476 752 LHLHLACELFYKLLKSILSLRNPVPMEIQFQWALSEASKDAGIGEFLMKLVCCEKERLSKTWGFDANENAHVSSSVVEDS 831 (1470)
Q Consensus 752 ~~lC~~C~k~F~~~~sL~~H~r~H~~ek~y~~kC~~CgK~F~s~~~L~k~iHseK~y~C~~CgF~~~s~~~v~s~~~e~s 831 (1470)
++.+..|-+.|.++..|++|.+.|++++.. .|+.||.-|.++..
T Consensus 179 ~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvv--ACp~Cg~~F~~~tk---------------------------------- 222 (467)
T KOG3608|consen 179 MCNWAMCTKHMGNKYRLREHIRTHSNEKVV--ACPHCGELFRTKTK---------------------------------- 222 (467)
T ss_pred eccchhhhhhhccHHHHHHHHHhcCCCeEE--ecchHHHHhccccH----------------------------------
Confidence 466679999999999999999999999999 88888877775544
Q ss_pred chhhHHHhccc--CCCCccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcccccc
Q 000476 832 AVLPLAIAGRS--EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQF 909 (1470)
Q Consensus 832 ~~~L~~H~r~H--~gekpykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhgek~ 909 (1470)
|..|.+.. ....+|.|.+|.|.|.+...|..| +..|..- |+|+.|+.+....++|.+|++..|.+.
T Consensus 223 ---l~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~H-v~rHvn~-------ykCplCdmtc~~~ssL~~H~r~rHs~d- 290 (467)
T KOG3608|consen 223 ---LFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSH-VVRHVNC-------YKCPLCDMTCSSASSLTTHIRYRHSKD- 290 (467)
T ss_pred ---HHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHH-HHHhhhc-------ccccccccCCCChHHHHHHHHhhhccC-
Confidence 44455433 235578899999999999989988 6667643 889999999999999999988877664
Q ss_pred hhhcccccccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcccccCChhHHHhhhhhcC-Cc--cccc
Q 000476 910 VEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLG-SI--RKFI 986 (1470)
Q Consensus 910 ~~~~kpfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~Ht-ge--Kpfk 986 (1470)
|||+|+.|++.|.+.+.|.+|+. +|+. -.|.|..- .|.+.+.+...+++|++.++ |. -+|.
T Consensus 291 ----kpfKCd~Cd~~c~~esdL~kH~~-~HS~----------~~y~C~h~-~C~~s~r~~~q~~~H~~evhEg~np~~Y~ 354 (467)
T KOG3608|consen 291 ----KPFKCDECDTRCVRESDLAKHVQ-VHSK----------TVYQCEHP-DCHYSVRTYTQMRRHFLEVHEGNNPILYA 354 (467)
T ss_pred ----CCccccchhhhhccHHHHHHHHH-hccc----------cceecCCC-CCcHHHHHHHHHHHHHHHhccCCCCCcee
Confidence 58999999999999999999975 7873 47888772 33777888888888886544 54 4699
Q ss_pred ccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCC
Q 000476 987 CRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKL 1030 (1470)
Q Consensus 987 C~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ 1030 (1470)
|..|++.|++-.+|.+|.++.|.-.-+++.+.|.-.+|.-.|-+
T Consensus 355 CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~mR 398 (467)
T KOG3608|consen 355 CHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFMR 398 (467)
T ss_pred eecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCceee
Confidence 99999999999999999999998766666777777777766654
No 9
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.76 E-value=3.7e-19 Score=212.44 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=78.3
Q ss_pred ccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccccCCCccccCCCCCcCCChHHH
Q 000476 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKR 1062 (1470)
Q Consensus 983 KpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~gekpy~C~~CgksF~~~s~L 1062 (1470)
.+|.|+.|+|.|...+.|.+| +--|+| .|||+|.+|.|+|+.+..|..|+|.|.|+|||+|+.|+|.|+...+.
T Consensus 893 gmyaCDqCDK~FqKqSSLaRH-KYEHsG-----qRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSY 966 (1007)
T KOG3623|consen 893 GMYACDQCDKAFQKQSSLARH-KYEHSG-----QRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSY 966 (1007)
T ss_pred ccchHHHHHHHHHhhHHHHHh-hhhhcC-----CCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccch
Confidence 569999999999999999999 999999 99999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCC
Q 000476 1063 IQTLKPLAS 1071 (1470)
Q Consensus 1063 ~kHkksh~~ 1071 (1470)
.+|+. |+.
T Consensus 967 SQHMN-HRY 974 (1007)
T KOG3623|consen 967 SQHMN-HRY 974 (1007)
T ss_pred Hhhhc-cch
Confidence 99988 663
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.75 E-value=5.7e-19 Score=211.51 Aligned_cols=126 Identities=29% Similarity=0.658 Sum_probs=111.2
Q ss_pred cCCCCCcccCCCCccCCCCCccccccccccccccccCCCCCCCcccCCCCceeeccCceeecc-CCCCCC----------
Q 000476 1296 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYEC-NHMCSC---------- 1364 (1470)
Q Consensus 1296 ~~~~~gC~C~~~~C~~~~C~C~~l~~~~~~~~~~~~g~~~~g~~~Y~~~G~l~~~~~~~IyEC-n~~C~C---------- 1364 (1470)
.+.+.||.| .+.|....|+|+.. .-|| |+.|.+
T Consensus 536 ~nrF~GC~C-k~QC~tkqCpC~~A-----------------------------------~rECdPd~Cl~cg~~~~~d~~ 579 (739)
T KOG1079|consen 536 RNRFPGCRC-KAQCNTKQCPCYLA-----------------------------------VRECDPDVCLMCGNVDHFDSS 579 (739)
T ss_pred HhcCCCCCc-ccccccCcCchhhh-----------------------------------ccccCchHHhccCcccccccC
Confidence 456789999 46888888998642 2366 355644
Q ss_pred CCCCCCccccccceeeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCCCcEEEEeCccccccc
Q 000476 1365 DRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMG 1444 (1470)
Q Consensus 1365 ~~~C~NRvvq~g~~~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~~~Ylf~l~~~~~~~~ 1444 (1470)
.-+|.|.-+|+|.+.++.|..+..-|||+|.++.+.+++||.||+||+|+.+||++|+..|+....+|||+|..
T Consensus 580 ~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~------ 653 (739)
T KOG1079|consen 580 KISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNN------ 653 (739)
T ss_pred ccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccc------
Confidence 12799999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccCCCCcEEEeccCCCChhccccCC
Q 000476 1445 RLIEGQVRYVIDATKYGNVSRFINHR 1470 (1470)
Q Consensus 1445 ~~~~~~~~~~IDA~~~GNvaRFINHS 1470 (1470)
.|+|||+++||.+||+|||
T Consensus 654 -------dyviDs~rkGnk~rFANHS 672 (739)
T KOG1079|consen 654 -------DYVIDSTRKGNKIRFANHS 672 (739)
T ss_pred -------cceEeeeeecchhhhccCC
Confidence 5999999999999999998
No 11
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.72 E-value=7.8e-18 Score=165.81 Aligned_cols=103 Identities=31% Similarity=0.621 Sum_probs=70.8
Q ss_pred cCCCCCCCCCeeEeeCCCcccccccCCCCCCcccccCCCCCCCceecccccCCCCCCCcccCCCCCcccCCCCccCCCCC
Q 000476 1236 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCACANSTCFPETCD 1315 (1470)
Q Consensus 1236 DIS~G~E~vPV~~vnd~D~~~~~~~~g~~~~~~~~~~~~P~~~F~YIt~ni~~~~~~ld~~~~~~gC~C~~~~C~~~~C~ 1315 (1470)
|||.|+|++||+++|++|+. .||+.|+||+++++.+++......+..||+|.++|-.+.+|.
T Consensus 1 Dis~g~e~~pI~~~N~vd~~------------------~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~~~~C~ 62 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDE------------------PPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSNPSNCE 62 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--------------------SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTCTTTSH
T ss_pred CCCCCccCCCEEEEeCCCCC------------------CCCCCeEEeeeEEcCCCccccccccCccCccCCCCCCCCCCc
Confidence 89999999999999999964 345799999999999987633456788999986533778999
Q ss_pred ccccccccccccccccCCCCCCCcccCCCCceeeccCceeeccCCCCCCCCCCCCc
Q 000476 1316 HVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNR 1371 (1470)
Q Consensus 1316 C~~l~~~~~~~~~~~~g~~~~g~~~Y~~~G~l~~~~~~~IyECn~~C~C~~~C~NR 1371 (1470)
|++++ ++.++|+.+|+|......+|||||+.|+|+.+|+||
T Consensus 63 C~~~~---------------~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 63 CLQRN---------------GGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp HHCCT---------------SSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred Ccccc---------------CccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 97642 234689999998767889999999999999999998
No 12
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.71 E-value=5.6e-18 Score=206.38 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=77.3
Q ss_pred ccccccCCcccccCChhHHHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccC---CCCcccCC
Q 000476 954 QSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKG---IRFYAYKL 1030 (1470)
Q Consensus 954 y~C~~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~---iCgKsF~~ 1030 (1470)
-+|-+| .+...-.+.|+.|.|+|+||+||+|.+||+.|.++.+|+.| +.+|....+. .-+|.|+ +|-+.|..
T Consensus 606 NqCiiC---~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH-~~vHka~p~~-R~q~ScP~~~ic~~kftn 680 (958)
T KOG1074|consen 606 NQCIIC---LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAH-MSVHKAKPPA-RVQFSCPSTFICQKKFTN 680 (958)
T ss_pred cceeee---eecccchhhhhhhhhcccCcCccccccccchhccccchhhc-ccccccCccc-cccccCCchhhhcccccc
Confidence 445555 66666667777788888888888888888888888888777 7777664333 2567777 77777877
Q ss_pred hhhhhhhcccccCC-C------------ccccCCCCCcCCChHHHHhhcCCCC
Q 000476 1031 KSGRLSRPRFKKGL-G------------AVSYRIRNRGAAGMKKRIQTLKPLA 1070 (1470)
Q Consensus 1031 ks~L~~H~r~H~ge-k------------py~C~~CgksF~~~s~L~kHkksh~ 1070 (1470)
.-.|..|+++|.+. . .-+|..|.+.|.....+-.+.--|.
T Consensus 681 ~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~ 733 (958)
T KOG1074|consen 681 AVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQP 733 (958)
T ss_pred cccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccC
Confidence 77777777777732 1 1357777777776666666655443
No 13
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.65 E-value=2.3e-16 Score=154.33 Aligned_cols=96 Identities=34% Similarity=0.652 Sum_probs=78.8
Q ss_pred eecCCCCCCCCCeeEeeCCCcccccccCCCCCCcccccCCCCCCCceecccccCCCCCCC-cccCCCCCcccCCCCccCC
Q 000476 1234 CDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDL-DAESLQLGCACANSTCFPE 1312 (1470)
Q Consensus 1234 ~~DIS~G~E~vPV~~vnd~D~~~~~~~~g~~~~~~~~~~~~P~~~F~YIt~ni~~~~~~l-d~~~~~~gC~C~~~~C~~~ 1312 (1470)
+.|||+|+|++||++||++|++ .||++|+||++++++.++.+ ....+..||+|.+ .|.+.
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~------------------~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~-~C~~~ 61 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDED------------------PPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSG-DCSSS 61 (98)
T ss_pred CccccCCccCCCcceEecCCCC------------------CCCCCcEECcceEcCCCcccccCCCCCCCCcCCC-CCCCC
Confidence 3699999999999999999974 23479999999999998753 3467889999997 57666
Q ss_pred C-CCccccccccccccccccCCCCCCCcccCCCCceeeccCceeeccCCCCC
Q 000476 1313 T-CDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCS 1363 (1470)
Q Consensus 1313 ~-C~C~~l~~~~~~~~~~~~g~~~~g~~~Y~~~G~l~~~~~~~IyECn~~C~ 1363 (1470)
. |.|+++ .++.|+|+..+++++..+.+|||||+.|+
T Consensus 62 ~~C~C~~~---------------~~~~~~Y~~~~~~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 62 NKCECARK---------------NGGEFAYELNGGLRLKRKPLIYECNSRCS 98 (98)
T ss_pred CcCCcHhh---------------cCCccCcccCCCEEeCCCCEEEcCCCCCC
Confidence 5 999753 24679997777777888999999999985
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.39 E-value=4.2e-13 Score=162.48 Aligned_cols=172 Identities=24% Similarity=0.406 Sum_probs=112.3
Q ss_pred ccceEeecCCCCCCCCCeeEeeCCCcccccccCCCCCCcccccCCCCCCCceecccccCCCCCCCcccCCCCCcccCCCC
Q 000476 1229 RGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCACANST 1308 (1470)
Q Consensus 1229 ~~~vi~~DIS~G~E~vPV~~vnd~D~~~~~~~~g~~~~~~~~~~~~P~~~F~YIt~ni~~~~~~ld~~~~~~gC~C~~~~ 1308 (1470)
..++-.+|.+.|.+.+|||.||.+|...++.-+++ . -.|.|....- +.-....+..||+|.+.+
T Consensus 872 ~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~d~----~--------~~~~~~~~~~----~s~~~~~~~~~~s~d~hp 935 (1262)
T KOG1141|consen 872 DKGLDVADFSLGTSGIPIPLVNSVDNDEPPSCEDS----K--------RRFQYNDQVD----ISSVSRDFCSGCSCDGHP 935 (1262)
T ss_pred ccccchhhhhccccCCCCccccccccCCCcccccc----c--------eeecccccch----hhhhccccccccccCCCC
Confidence 34455679999999999999999886433221111 0 1334433211 111235678899998755
Q ss_pred ccCCCCCcccccccccccc---ccccCCCCCCCcccCCCCceeeccCceeeccCCCCCCCCCCCCccccccceeeEE---
Q 000476 1309 CFPETCDHVYLFDNDYEDA---KDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLE--- 1382 (1470)
Q Consensus 1309 C~~~~C~C~~l~~~~~~~~---~~~~g~~~~g~~~Y~~~G~l~~~~~~~IyECn~~C~C~~~C~NRvvq~g~~~~Le--- 1382 (1470)
-+-+.|.|.++.-+..... ...+|+..--.-.|+.+.. .....|||++.|.|...|.||++|.+.+++.+
T Consensus 936 ~d~~~~~~~~~~~~~~~~cpp~~s~d~~~~~~eS~~~~ns~----~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s 1011 (1262)
T KOG1141|consen 936 SDASKCECQQLSIEAMKRCPPNLSFDGHDELYESSEKQNSF----LKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSS 1011 (1262)
T ss_pred cccCcccCCCCChhhhcCCCCccccCchhhhhhhhhhcchh----hhccceeccccchhcccccchhhhcCCccceeeee
Confidence 5557788876533222111 1111111111111222211 12357899999999999999999998777654
Q ss_pred -----EEeecCccccceecccccCCcEEEEeeccccCHHHHHH
Q 000476 1383 -----VFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNK 1420 (1470)
Q Consensus 1383 -----VfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~ 1420 (1470)
||+++..|||++...+||.-+|||+|+|...++.-+.+
T Consensus 1012 ~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~ 1054 (1262)
T KOG1141|consen 1012 FNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAPPTDDLADE 1054 (1262)
T ss_pred cccccccccccccccccccccCCCCcccccccCCCCchhhHHH
Confidence 66778899999999999999999999999999887764
No 15
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.37 E-value=9.5e-14 Score=146.63 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=99.3
Q ss_pred cccccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcccccCChhHHHhhhhhcCCcccccccccCCcc
Q 000476 915 LQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKF 994 (1470)
Q Consensus 915 pfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF 994 (1470)
.|.|.+|+|.|.-...|.+|++ .|... +.|.|..| ++.|....+|++|+++|+|.+||+|..|+|+|
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~k-ch~~v---------kr~lct~c---gkgfndtfdlkrh~rthtgvrpykc~~c~kaf 183 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLK-CHSDV---------KRHLCTFC---GKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAF 183 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhh-hccHH---------HHHHHhhc---cCcccchhhhhhhhccccCccccchhhhhHHH
Confidence 6889999999999999999986 68755 77888888 99999999999999999999999999999999
Q ss_pred CChhhHHHHhhhhccCCCCC-----CCCCcccCCCCcccCChhhhhhhcccccCCC
Q 000476 995 DLLPDLGRHHQAAHMGPNLV-----NSRPHKKGIRFYAYKLKSGRLSRPRFKKGLG 1045 (1470)
Q Consensus 995 ~sks~LkrH~~r~Htge~l~-----~eKpykC~iCgKsF~~ks~L~~H~r~H~gek 1045 (1470)
.++-.|..|.+++|.....| ..+.|.|..||++-.....+..|++.|+...
T Consensus 184 tqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 184 TQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 99999999988899764322 2567888888888888888888887777443
No 16
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.33 E-value=6.3e-13 Score=171.14 Aligned_cols=79 Identities=37% Similarity=0.605 Sum_probs=72.5
Q ss_pred eeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCC--CcEEEEeCccccccccccCCCCcEEEe
Q 000476 1379 VKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG--CGYMLNIGAHINDMGRLIEGQVRYVID 1456 (1470)
Q Consensus 1379 ~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~--~~Ylf~l~~~~~~~~~~~~~~~~~~ID 1456 (1470)
..|...++...||||||.++|.+|+||+||+||+|...=|+.|+..|...| ++|||.+|. .+|||
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~-------------~~ViD 932 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDD-------------EVVVD 932 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeeccc-------------ceEEe
Confidence 347777889999999999999999999999999999999999999997765 789999986 58999
Q ss_pred ccCCCChhccccCC
Q 000476 1457 ATKYGNVSRFINHR 1470 (1470)
Q Consensus 1457 A~~~GNvaRFINHS 1470 (1470)
|++.||+|||||||
T Consensus 933 Atk~gniAr~InHs 946 (1005)
T KOG1080|consen 933 ATKKGNIARFINHS 946 (1005)
T ss_pred ccccCchhheeecc
Confidence 99999999999998
No 17
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.32 E-value=4.8e-13 Score=141.42 Aligned_cols=124 Identities=17% Similarity=0.299 Sum_probs=97.3
Q ss_pred CCCCccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcccccchhhcccccccCCC
Q 000476 843 EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCG 922 (1470)
Q Consensus 843 ~gekpykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~Cg 922 (1470)
.+...|.|.+|+|.|.-..-|.+| ++.|... +.|-|..|||.|.....|++|+++|+|.+ ||+|..|+
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh-~kch~~v-----kr~lct~cgkgfndtfdlkrh~rthtgvr------pykc~~c~ 180 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRH-LKCHSDV-----KRHLCTFCGKGFNDTFDLKRHTRTHTGVR------PYKCSLCE 180 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHH-hhhccHH-----HHHHHhhccCcccchhhhhhhhccccCcc------ccchhhhh
Confidence 345679999999999999999999 8999998 99999999999999999999999999998 99999999
Q ss_pred CCCCChhhhhhhhhhhccccccc-hhhhhcccccccccCCcccccCChhHHHhhhhhcCC
Q 000476 923 SHFGNTEELWLHVQSVHAIDFKM-SEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGS 981 (1470)
Q Consensus 923 K~F~sks~L~~H~k~vHsgef~~-~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~Htg 981 (1470)
|.|.....|..|++.+|.....- -+....+.|.|+.| +.+-.....+..|++.|+.
T Consensus 181 kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedc---g~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 181 KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDC---GYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeeccc---CCCCCChhHHHHHHHhcCC
Confidence 99999999999999999754000 01112234555555 4444444455555555443
No 18
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.18 E-value=6.1e-12 Score=151.70 Aligned_cols=123 Identities=23% Similarity=0.347 Sum_probs=91.3
Q ss_pred ccccccCccccChhhhhhhhhhcccccchhhcccccccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCC
Q 000476 882 YACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSP 961 (1470)
Q Consensus 882 ykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~ 961 (1470)
..|++|.+.+.....|+.|++..|... +-.|.|..|..+|.....|.+||. .|..-
T Consensus 211 ltcpycdrgykrltslkeHikyrhekn----e~nfsC~lCsytFAyRtQLErhm~-~hkpg------------------- 266 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKN----EPNFSCMLCSYTFAYRTQLERHMQ-LHKPG------------------- 266 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhC----CCCCcchhhhhhhhhHHHHHHHHH-hhcCC-------------------
Confidence 567777777777777777777766544 345777777777777777777765 45421
Q ss_pred cccccCChhHHHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccc
Q 000476 962 KKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFK 1041 (1470)
Q Consensus 962 c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H 1041 (1470)
+-. ..|.-.-...+.|+|.+|||+|+.+.+|+.| .|+|.| +|||.|+.|+|+|.....+..||-..
T Consensus 267 -~dq-------a~sltqsa~lRKFKCtECgKAFKfKHHLKEH-lRIHSG-----EKPfeCpnCkKRFSHSGSySSHmSSK 332 (1007)
T KOG3623|consen 267 -GDQ-------AISLTQSALLRKFKCTECGKAFKFKHHLKEH-LRIHSG-----EKPFECPNCKKRFSHSGSYSSHMSSK 332 (1007)
T ss_pred -Ccc-------cccccchhhhccccccccchhhhhHHHHHhh-heeecC-----CCCcCCcccccccccCCccccccccc
Confidence 000 0111111234789999999999999999999 999999 89999999999999999999999544
Q ss_pred c
Q 000476 1042 K 1042 (1470)
Q Consensus 1042 ~ 1042 (1470)
.
T Consensus 333 K 333 (1007)
T KOG3623|consen 333 K 333 (1007)
T ss_pred c
Confidence 3
No 19
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.14 E-value=4.1e-12 Score=158.20 Aligned_cols=91 Identities=42% Similarity=0.690 Sum_probs=81.4
Q ss_pred CCCCccccc-cceeeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHH-hhccCCCCcEEEEeCccccccc
Q 000476 1367 TCPNRVLQN-GVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRR-SRYGRDGCGYMLNIGAHINDMG 1444 (1470)
Q Consensus 1367 ~C~NRvvq~-g~~~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~-~~y~~~~~~Ylf~l~~~~~~~~ 1444 (1470)
+|.|+.+|+ +.-.+|+||+...+||||++.++|++|+||+||+||||+.++++.|+ ..|..+.+.|+..++.
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p------ 1238 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDP------ 1238 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCc------
Confidence 388888875 56778999999999999999999999999999999999999998883 4477788889988875
Q ss_pred cccCCCCcEEEeccCCCChhccccCC
Q 000476 1445 RLIEGQVRYVIDATKYGNVSRFINHR 1470 (1470)
Q Consensus 1445 ~~~~~~~~~~IDA~~~GNvaRFINHS 1470 (1470)
..+||+.++||.+||||||
T Consensus 1239 -------~l~id~~R~~n~~Rfinhs 1257 (1306)
T KOG1083|consen 1239 -------GLFIDIPRMGNGARFINHS 1257 (1306)
T ss_pred -------cccCChhhccccccccccc
Confidence 5899999999999999997
No 20
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.04 E-value=3.8e-10 Score=111.25 Aligned_cols=78 Identities=46% Similarity=0.863 Sum_probs=66.3
Q ss_pred eEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCC--CcEEEEeCccccccccccCCCCcEEEec
Q 000476 1380 KLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG--CGYMLNIGAHINDMGRLIEGQVRYVIDA 1457 (1470)
Q Consensus 1380 ~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~--~~Ylf~l~~~~~~~~~~~~~~~~~~IDA 1457 (1470)
+++++++..+|+||+|..+|++|++|++|.|+++...++..+...+...+ ..|+|+... .++||+
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~id~ 67 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDS-------------DLCIDA 67 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCC-------------CEEEeC
Confidence 36788888999999999999999999999999999988887754344333 378887643 589999
Q ss_pred cCCCChhccccCC
Q 000476 1458 TKYGNVSRFINHR 1470 (1470)
Q Consensus 1458 ~~~GNvaRFINHS 1470 (1470)
...||++||||||
T Consensus 68 ~~~~~~~~~iNHs 80 (116)
T smart00317 68 RRKGNIARFINHS 80 (116)
T ss_pred CccCcHHHeeCCC
Confidence 9999999999998
No 21
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.84 E-value=4e-09 Score=129.94 Aligned_cols=141 Identities=20% Similarity=0.329 Sum_probs=90.3
Q ss_pred cccCcCCccccChhHHhhhhhhcccchhhhccCcccccc--cCccccChhhhhhhhhhcccccchhhcccccccCCCCCC
Q 000476 848 HKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAI--CLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHF 925 (1470)
Q Consensus 848 ykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~--CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F 925 (1470)
-.|+.|...... ..|..| .. |... ....|+. |+..|. +..+..| +.|+.|++.|
T Consensus 408 V~C~NC~~~i~l-~~l~lH-e~-~C~r-----~~V~Cp~~~Cg~v~~-r~el~~H---------------~~C~~Cgk~f 463 (567)
T PLN03086 408 VECRNCKHYIPS-RSIALH-EA-YCSR-----HNVVCPHDGCGIVLR-VEEAKNH---------------VHCEKCGQAF 463 (567)
T ss_pred EECCCCCCccch-hHHHHH-Hh-hCCC-----cceeCCcccccceee-ccccccC---------------ccCCCCCCcc
Confidence 457777665543 345566 22 2222 3355764 777772 3334444 3488888877
Q ss_pred CChhhhhhhhhhhccccccchhhhhcccccccccCCcccccCChhHHHhhhhhcCCcccccccccCCccC----------
Q 000476 926 GNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFD---------- 995 (1470)
Q Consensus 926 ~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF~---------- 995 (1470)
. ...|..|++..| +++.|. | +..+ .+..|..|+.+|.+++++.|++|++.|.
T Consensus 464 ~-~s~LekH~~~~H------------kpv~Cp-C---g~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d 525 (567)
T PLN03086 464 Q-QGEMEKHMKVFH------------EPLQCP-C---GVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRD 525 (567)
T ss_pred c-hHHHHHHHHhcC------------CCccCC-C---CCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhh
Confidence 5 566788866433 467776 6 6544 4577888888888888888888888884
Q ss_pred ChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhc
Q 000476 996 LLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRP 1038 (1470)
Q Consensus 996 sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~ 1038 (1470)
..+.|..| ..++ | .+++.|..||+.|..+ .|..|+
T Consensus 526 ~~s~Lt~H-E~~C-G-----~rt~~C~~Cgk~Vrlr-dm~~H~ 560 (567)
T PLN03086 526 RLRGMSEH-ESIC-G-----SRTAPCDSCGRSVMLK-EMDIHQ 560 (567)
T ss_pred hhhhHHHH-HHhc-C-----CcceEccccCCeeeeh-hHHHHH
Confidence 24578887 5555 5 6788888888777654 366666
No 22
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.81 E-value=6.2e-09 Score=128.36 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=99.5
Q ss_pred ccccccCccccChhhhhhhhhhcccccchhhcccccccC--CCCCCCChhhhhhhhhhhccccccchhhhhccccccccc
Q 000476 882 YACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIP--CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED 959 (1470)
Q Consensus 882 ykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~--CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~C 959 (1470)
..|+.|..... ...|..|.....- . .-.|+. |+..|. +..+..| +.|..|
T Consensus 408 V~C~NC~~~i~-l~~l~lHe~~C~r-~------~V~Cp~~~Cg~v~~-r~el~~H-------------------~~C~~C 459 (567)
T PLN03086 408 VECRNCKHYIP-SRSIALHEAYCSR-H------NVVCPHDGCGIVLR-VEEAKNH-------------------VHCEKC 459 (567)
T ss_pred EECCCCCCccc-hhHHHHHHhhCCC-c------ceeCCcccccceee-ccccccC-------------------ccCCCC
Confidence 46888876554 4556677643322 2 356874 888883 3333333 356666
Q ss_pred CCcccccCChhHHHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCC---------
Q 000476 960 SPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKL--------- 1030 (1470)
Q Consensus 960 p~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~--------- 1030 (1470)
+..|. ...|..|+++|+ +++.|+ ||+.| .+..|..| +++|.+ .+++.|.+|++.|..
T Consensus 460 ---gk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H-~~thCp-----~Kpi~C~fC~~~v~~g~~~~d~~d 525 (567)
T PLN03086 460 ---GQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQH-QASTCP-----LRLITCRFCGDMVQAGGSAMDVRD 525 (567)
T ss_pred ---CCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhh-hhccCC-----CCceeCCCCCCccccCccccchhh
Confidence 77775 577899998875 789998 99755 66888888 888888 789999999998852
Q ss_pred -hhhhhhhcccccCCCccccCCCCCcCCChHHHHhhc
Q 000476 1031 -KSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQTL 1066 (1470)
Q Consensus 1031 -ks~L~~H~r~H~gekpy~C~~CgksF~~~s~L~kHk 1066 (1470)
.+.|..|...+ |.+++.|..||+.+.. ..+..|+
T Consensus 526 ~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrl-rdm~~H~ 560 (567)
T PLN03086 526 RLRGMSEHESIC-GSRTAPCDSCGRSVML-KEMDIHQ 560 (567)
T ss_pred hhhhHHHHHHhc-CCcceEccccCCeeee-hhHHHHH
Confidence 45788898885 8899999999887753 3344443
No 23
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=98.79 E-value=6.5e-09 Score=115.30 Aligned_cols=86 Identities=35% Similarity=0.511 Sum_probs=70.3
Q ss_pred ccceeeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCCC--cEEEEeCccccccccccCCCCc
Q 000476 1375 NGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGC--GYMLNIGAHINDMGRLIEGQVR 1452 (1470)
Q Consensus 1375 ~g~~~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~~--~Ylf~l~~~~~~~~~~~~~~~~ 1452 (1470)
.|....|.+..-..+|.||+|...+.+|+||.||.|.+|...||..|+..|..+.. .|+|-+... ...
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~----------sk~ 321 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHN----------SKK 321 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeecc----------Cee
Confidence 45555666655666999999999999999999999999999999999999876543 377766542 247
Q ss_pred EEEeccCC-CChhccccCC
Q 000476 1453 YVIDATKY-GNVSRFINHR 1470 (1470)
Q Consensus 1453 ~~IDA~~~-GNvaRFINHS 1470 (1470)
|||||+.- |-.+|.||||
T Consensus 322 yCiDAT~et~~lGRLINHS 340 (392)
T KOG1085|consen 322 YCIDATKETPWLGRLINHS 340 (392)
T ss_pred eeeecccccccchhhhccc
Confidence 99999985 6689999998
No 24
>PHA00733 hypothetical protein
Probab=98.52 E-value=6.4e-08 Score=99.59 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=48.3
Q ss_pred HHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccccC
Q 000476 972 VENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKG 1043 (1470)
Q Consensus 972 L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~g 1043 (1470)
|.+|+..| +.+||.|+.||+.|.+...|..| ++.|+. +|.|.+|++.|.....|..|+..+++
T Consensus 62 l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H-~r~h~~-------~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 62 LYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQH-IRYTEH-------SKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred HHhhcccC-CCCCccCCCCCCcCCCHHHHHHH-HhcCCc-------CccCCCCCCccCCHHHHHHHHHHhcC
Confidence 44444333 46888999999999999999888 666643 68899999999999999988866654
No 25
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.46 E-value=3.1e-08 Score=115.13 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=22.8
Q ss_pred ccccCcCCccccChhHHhhhhhhcccc
Q 000476 847 THKCKICSQVFLHDQELGVHWMDNHKK 873 (1470)
Q Consensus 847 pykC~~CgKsF~s~s~L~~H~~~~Ht~ 873 (1470)
.|+|+.|+|.|+...+|..| +++|..
T Consensus 295 EYrCPEC~KVFsCPANLASH-RRWHKP 320 (500)
T KOG3993|consen 295 EYRCPECDKVFSCPANLASH-RRWHKP 320 (500)
T ss_pred eecCCcccccccCchhhhhh-hcccCC
Confidence 38999999999999999999 889964
No 26
>PHA00733 hypothetical protein
Probab=98.40 E-value=2.1e-07 Score=95.86 Aligned_cols=93 Identities=4% Similarity=-0.048 Sum_probs=74.2
Q ss_pred hhHHHhhhhhcCCcccccccccCCccCChhhHHHH--hh--hhccCCCCCCCCCcccCCCCcccCChhhhhhhcccccCC
Q 000476 969 SASVENHSENLGSIRKFICRFCGLKFDLLPDLGRH--HQ--AAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGL 1044 (1470)
Q Consensus 969 ss~L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH--~~--r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~ge 1044 (1470)
...|..+-..-...+++.|.+|.+.|.....|..| +. ..+.+ .+||.|+.|++.|.+...|..|++.| .
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~kPy~C~~Cgk~Fss~s~L~~H~r~h--~ 97 (128)
T PHA00733 25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKA-----VSPYVCPLCLMPFSSSVSLKQHIRYT--E 97 (128)
T ss_pred HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCC-----CCCccCCCCCCcCCCHHHHHHHHhcC--C
Confidence 44555554444456889999999999887777765 11 12233 68999999999999999999999987 4
Q ss_pred CccccCCCCCcCCChHHHHhhcCC
Q 000476 1045 GAVSYRIRNRGAAGMKKRIQTLKP 1068 (1470)
Q Consensus 1045 kpy~C~~CgksF~~~s~L~kHkks 1068 (1470)
++|.|..|++.|.....|..|+..
T Consensus 98 ~~~~C~~CgK~F~~~~sL~~H~~~ 121 (128)
T PHA00733 98 HSKVCPVCGKEFRNTDSTLDHVCK 121 (128)
T ss_pred cCccCCCCCCccCCHHHHHHHHHH
Confidence 689999999999999999999763
No 27
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.27 E-value=1.8e-07 Score=108.90 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=69.9
Q ss_pred ccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcccccchh---------------
Q 000476 847 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVE--------------- 911 (1470)
Q Consensus 847 pykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~--------------- 911 (1470)
.|.|..|...|.+...|.+| +-.-.-. --|+|+.|+|.|.-..+|..|.|.|.......
T Consensus 267 dyiCqLCK~kYeD~F~LAQH-rC~RIV~-----vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ra 340 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQH-RCPRIVH-----VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRA 340 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhc-cCCeeEE-----eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhh
Confidence 39999999999999999999 4221111 34999999999999999999999996432111
Q ss_pred ------------hcccccccCCCCCCCChhhhhhhhhhhcc
Q 000476 912 ------------QCMLQQCIPCGSHFGNTEELWLHVQSVHA 940 (1470)
Q Consensus 912 ------------~~kpfkC~~CgK~F~sks~L~~H~k~vHs 940 (1470)
....|.|.+|+|.|..+..|+.|+..+|.
T Consensus 341 e~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~ 381 (500)
T KOG3993|consen 341 EVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR 381 (500)
T ss_pred hhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence 12459999999999999999999765554
No 28
>PHA02768 hypothetical protein; Provisional
Probab=98.17 E-value=4.8e-07 Score=79.01 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=27.0
Q ss_pred CcccCCCCcccCChhhhhhhcccccCCCccccCCCCCcCCChHHHH
Q 000476 1018 PHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRI 1063 (1470)
Q Consensus 1018 pykC~iCgKsF~~ks~L~~H~r~H~gekpy~C~~CgksF~~~s~L~ 1063 (1470)
.|+|+.||+.|.+.++|..||++|+ ++|+|..|++.|.+.+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 3566666666666666666666666 5666666666666555443
No 29
>PHA02768 hypothetical protein; Provisional
Probab=97.95 E-value=3.9e-06 Score=73.48 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=37.3
Q ss_pred cccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhh
Q 000476 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRL 1035 (1470)
Q Consensus 984 pfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~ 1035 (1470)
-|+|+.||+.|.+.++|..| +++|+. +|+|..|++.|.+.+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H-~r~H~k-------~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITH-LRKHNT-------NLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHH-HHhcCC-------cccCCcccceecccceeE
Confidence 37899999999999999998 888873 788999999998887775
No 30
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.91 E-value=2.3e-06 Score=106.49 Aligned_cols=105 Identities=29% Similarity=0.322 Sum_probs=81.8
Q ss_pred eeccCCCCCCCCCCCCccccccceeeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCCCcEEE
Q 000476 1355 IYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYML 1434 (1470)
Q Consensus 1355 IyECn~~C~C~~~C~NRvvq~g~~~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~~~Ylf 1434 (1470)
+.++...+.....+.|.........+..+..+..+||||+|++.|++|+||.+|.|+++...++..|...+...+..+.|
T Consensus 308 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
T COG2940 308 SDFSKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSF 387 (480)
T ss_pred cccccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccch
Confidence 33454545555567777667777788888889999999999999999999999999999999999888766444444433
Q ss_pred EeCccccccccccCCCCcEEEeccCCCChhccccCC
Q 000476 1435 NIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHR 1470 (1470)
Q Consensus 1435 ~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHS 1470 (1470)
.+-.. ..+++|+...|+++||||||
T Consensus 388 ~~~~~-----------~~~~~d~~~~g~~~r~~nHS 412 (480)
T COG2940 388 GLLED-----------KDKVRDSQKAGDVARFINHS 412 (480)
T ss_pred hhccc-----------cchhhhhhhcccccceeecC
Confidence 33221 16899999999999999998
No 31
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.64 E-value=2.1e-05 Score=58.93 Aligned_cols=24 Identities=21% Similarity=0.654 Sum_probs=14.8
Q ss_pred HHhhhhhcCCcccccccccCCccC
Q 000476 972 VENHSENLGSIRKFICRFCGLKFD 995 (1470)
Q Consensus 972 L~~H~r~HtgeKpfkC~~CgKsF~ 995 (1470)
|..|+++|++++||+|++|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 556666666666666666666654
No 32
>PHA00732 hypothetical protein
Probab=97.37 E-value=0.00013 Score=69.29 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=28.1
Q ss_pred cccccccCCccCChhhHHHHhhh-hccCCCCCCCCCcccCCCCcccCChhhhhhhccccc
Q 000476 984 KFICRFCGLKFDLLPDLGRHHQA-AHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKK 1042 (1470)
Q Consensus 984 pfkC~~CgKsF~sks~LkrH~~r-~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~ 1042 (1470)
||.|+.||+.|.+...|+.| ++ .|++ +.|+.|++.|. .|..|++.+.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H-~r~~H~~--------~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQH-ARRNHTL--------TKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHH-hhcccCC--------CccCCCCCEeC---ChhhhhcccC
Confidence 46666666666666666666 43 3443 35666666665 4666665444
No 33
>PHA00616 hypothetical protein
Probab=97.36 E-value=4.8e-05 Score=63.76 Aligned_cols=33 Identities=3% Similarity=-0.224 Sum_probs=22.2
Q ss_pred CcccCCCCcccCChhhhhhhcccccCCCccccC
Q 000476 1018 PHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYR 1050 (1470)
Q Consensus 1018 pykC~iCgKsF~~ks~L~~H~r~H~gekpy~C~ 1050 (1470)
||+|+.||+.|..++.|.+|++.|+|++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 466666666666666666666666666666654
No 34
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.22 E-value=0.00025 Score=62.46 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=42.6
Q ss_pred cccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhccccc
Q 000476 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKK 1042 (1470)
Q Consensus 984 pfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~ 1042 (1470)
.|.|++|++. .+...|..|+...|..+ .+.+.|++|...+. .+|..|+..++
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~----~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHRSE----SKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCcCC----CCCccCCCchhhhh--hHHHHHHHHhc
Confidence 4899999995 55688999988999874 46799999998755 49999997665
No 35
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.21 E-value=0.00017 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=13.1
Q ss_pred HHHHhhhhccCCCCCCCCCcccCCCCcccC
Q 000476 1000 LGRHHQAAHMGPNLVNSRPHKKGIRFYAYK 1029 (1470)
Q Consensus 1000 LkrH~~r~Htge~l~~eKpykC~iCgKsF~ 1029 (1470)
|.+| +++|+| ++||+|++|+++|.
T Consensus 2 l~~H-~~~H~~-----~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRH-MRTHTG-----EKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHH-HHHHSS-----SSSEEESSSSEEES
T ss_pred HHHH-hhhcCC-----CCCCCCCCCcCeeC
Confidence 4555 445555 55555555555554
No 36
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.05 E-value=0.00042 Score=61.00 Aligned_cols=51 Identities=27% Similarity=0.589 Sum_probs=32.8
Q ss_pred cccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcc
Q 000476 848 HKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERH 905 (1470)
Q Consensus 848 ykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hh 905 (1470)
|.||+|++ ..+...|..|....|..+. +.+.|++|...+. .+|..|+..+|
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~----~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSES----KNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCC----CCccCCCchhhhh--hHHHHHHHHhc
Confidence 67777777 4445667777666776652 4577777776544 36667766655
No 37
>PHA00732 hypothetical protein
Probab=97.05 E-value=0.00039 Score=66.02 Aligned_cols=47 Identities=11% Similarity=-0.113 Sum_probs=39.3
Q ss_pred CcccCCCCcccCChhhhhhhccc-ccCCCccccCCCCCcCCChHHHHhhcCCCC
Q 000476 1018 PHKKGIRFYAYKLKSGRLSRPRF-KKGLGAVSYRIRNRGAAGMKKRIQTLKPLA 1070 (1470)
Q Consensus 1018 pykC~iCgKsF~~ks~L~~H~r~-H~gekpy~C~~CgksF~~~s~L~kHkksh~ 1070 (1470)
||.|+.|++.|.+...|+.|++. |. ++.|+.|++.|.+ +..|.++..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~~---l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYRR---LNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeCC---hhhhhcccC
Confidence 68999999999999999999985 65 4689999999984 666666443
No 38
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.72 E-value=0.00075 Score=76.91 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=42.4
Q ss_pred cccccccc--cCCccCChhhHHHHhhhhccCCCC-------------CCCCCcccCCCCcccCChhhhhhhc
Q 000476 982 IRKFICRF--CGLKFDLLPDLGRHHQAAHMGPNL-------------VNSRPHKKGIRFYAYKLKSGRLSRP 1038 (1470)
Q Consensus 982 eKpfkC~~--CgKsF~sks~LkrH~~r~Htge~l-------------~~eKpykC~iCgKsF~~ks~L~~H~ 1038 (1470)
+|||+|++ |.|+|+....|+-|+.--|...++ .+.|||.|++|+|+|+....|+.|.
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 48888865 889999999999985555533221 2257888888888888888888886
No 39
>PHA00616 hypothetical protein
Probab=96.72 E-value=0.00055 Score=57.58 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=29.4
Q ss_pred cccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCC
Q 000476 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGI 1023 (1470)
Q Consensus 984 pfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~i 1023 (1470)
||+|+.||+.|..+++|.+| .+.|+| ++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H-~r~~hg-----~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEH-LLSVHK-----QNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHH-HHHhcC-----CCccceeE
Confidence 68999999999999999999 788888 78888874
No 40
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.33 E-value=0.0015 Score=74.52 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=45.3
Q ss_pred CCCccccCc--CCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcccccchhhcccccccCC
Q 000476 844 DEKTHKCKI--CSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPC 921 (1470)
Q Consensus 844 gekpykC~~--CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~C 921 (1470)
++|||+|++ |.|.|++...|+-|+..-|... +...=+ .-..|.-. ..+.|||+|++|
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~-----~~~~~p----------~p~~~~~F------~~~~KPYrCevC 404 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQ-----KLHENP----------SPEKMNIF------SAKDKPYRCEVC 404 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCc-----ccCCCC----------Cccccccc------cccCCceecccc
Confidence 359999998 9999999999999955455322 111111 11111111 112348888888
Q ss_pred CCCCCChhhhhhhh
Q 000476 922 GSHFGNTEELWLHV 935 (1470)
Q Consensus 922 gK~F~sks~L~~H~ 935 (1470)
+|.|++...|+.|.
T Consensus 405 ~KRYKNlNGLKYHr 418 (423)
T COG5189 405 DKRYKNLNGLKYHR 418 (423)
T ss_pred chhhccCccceecc
Confidence 88888888888884
No 41
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.01 E-value=0.0021 Score=46.41 Aligned_cols=22 Identities=23% Similarity=-0.053 Sum_probs=10.7
Q ss_pred cccCCCCcccCChhhhhhhccc
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPRF 1040 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r~ 1040 (1470)
|+|+.|++.|.++..|.+|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3445555555555555555443
No 42
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.92 E-value=0.0033 Score=60.81 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=20.8
Q ss_pred ccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcccccchhhcccccccCCCCCCCCh
Q 000476 849 KCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNT 928 (1470)
Q Consensus 849 kC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F~sk 928 (1470)
+|..|+..|.+...|..|+...|.-. .+ ....+.....+..+++..... .+.|..|++.|.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~-----~~-----~~~~l~~~~~~~~~~~~~~~~-------~~~C~~C~~~f~s~ 63 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFD-----IP-----DQKYLVDPNRLLNYLRKKVKE-------SFRCPYCNKTFRSR 63 (100)
T ss_dssp ----------------------------------------------------------S-------SEEBSSSS-EESSH
T ss_pred Cccccccccccccccccccccccccc-----cc-----cccccccccccccccccccCC-------CCCCCccCCCCcCH
Confidence 58999999999999999987788644 11 222233444455554432222 48899999999999
Q ss_pred hhhhhhhhhh
Q 000476 929 EELWLHVQSV 938 (1470)
Q Consensus 929 s~L~~H~k~v 938 (1470)
..|..||+..
T Consensus 64 ~~l~~Hm~~~ 73 (100)
T PF12756_consen 64 EALQEHMRSK 73 (100)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHcCc
Confidence 9999999854
No 43
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.015 Score=73.90 Aligned_cols=108 Identities=20% Similarity=0.279 Sum_probs=65.2
Q ss_pred cccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCc---------cccChhhhhhhhhhccc-ccchhhccccc
Q 000476 848 HKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLD---------SFTNKKVLESHVQERHH-VQFVEQCMLQQ 917 (1470)
Q Consensus 848 ykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgK---------sF~sks~L~~H~r~Hhg-ek~~~~~kpfk 917 (1470)
-.|.+| -.|.+...|+.|+...|. .+.|.+|-. ...+...|..|++.--. ++... .--.
T Consensus 116 ~~~~~c-~~~~s~~~Lk~H~~~~H~--------~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~r--Ghp~ 184 (669)
T KOG2231|consen 116 KECLHC-TEFKSVENLKNHMRDQHK--------LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCR--GHPL 184 (669)
T ss_pred CCCccc-cchhHHHHHHHHHHHhhh--------hhccccccccceeeeeeeehehHHHHHHHHhcCCCcccccc--CCcc
Confidence 357788 778888888888667773 456666632 22344556666654322 21110 1135
Q ss_pred ccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccC---CcccccCChhHHHhhhhhcC
Q 000476 918 CIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDS---PKKLELGYSASVENHSENLG 980 (1470)
Q Consensus 918 C~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp---~c~~~F~sss~L~~H~r~Ht 980 (1470)
|..|...|.....|.+|++..| |.|..|+ .+...|.....|..|-+.++
T Consensus 185 C~~C~~~fld~~el~rH~~~~h--------------~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 185 CKFCHERFLDDDELYRHLRFDH--------------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred chhhhhhhccHHHHHHhhccce--------------eheeecCcccccchhcccchHHHHHhhhcC
Confidence 8888888888888888876544 4555552 23344555667777766655
No 44
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.72 E-value=0.0053 Score=59.38 Aligned_cols=71 Identities=23% Similarity=0.430 Sum_probs=16.3
Q ss_pred cccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcccccCChhHHHhhhhhcCCcccccccccCCccCC
Q 000476 917 QCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDL 996 (1470)
Q Consensus 917 kC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF~s 996 (1470)
+|..|+..|.+...|..||...|.-.+ + . ...+.....+..+.+... ...+.|..|++.|.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---------~----~----~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s 62 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDI---------P----D----QKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRS 62 (100)
T ss_dssp ------------------------------------------------------------------SSEEBSSSS-EESS
T ss_pred Ccccccccccccccccccccccccccc---------c----c----cccccccccccccccccc-CCCCCCCccCCCCcC
Confidence 488899999999999999887775320 0 0 111112223333332211 125778888888888
Q ss_pred hhhHHHHhh
Q 000476 997 LPDLGRHHQ 1005 (1470)
Q Consensus 997 ks~LkrH~~ 1005 (1470)
...|..|+.
T Consensus 63 ~~~l~~Hm~ 71 (100)
T PF12756_consen 63 REALQEHMR 71 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888888844
No 45
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=95.68 E-value=0.0022 Score=57.69 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=32.4
Q ss_pred CCC-CCcccC----------CcccccccCCCCCCc-cccccceeeeccC
Q 000476 1184 HLE-PLPSVS----------AGIRSSDSSDFVNNQ-WEVDECHCIIDSR 1220 (1470)
Q Consensus 1184 pl~-p~~~~~----------~~~k~v~~~~p~~~~-w~~~e~h~~l~~~ 1220 (1470)
||+ |+++|| +.++.|+|++|||.. ++|.|+|.||...
T Consensus 1 PL~~Pll~gw~R~~~~~~~~~~k~~V~Y~aPCGr~Lr~~~EV~~YL~~t 49 (60)
T cd01395 1 PLHTPLLCGFQRMKYRARVGKVKKHVIYKAPCGRSLRNMSEVHRYLRET 49 (60)
T ss_pred CcccccccCeEEEEEeccCCCcccceEEECCcchhhhcHHHHHHHHHhc
Confidence 777 999999 257789999999999 9999999988765
No 46
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.012 Score=74.66 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=74.6
Q ss_pred cccccccCccccChhhhhhhhhhcccccchhhcccccccCCCC---------CCCChhhhhhhhhhhccccccchhhhhc
Q 000476 881 GYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGS---------HFGNTEELWLHVQSVHAIDFKMSEVAQQ 951 (1470)
Q Consensus 881 pykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK---------~F~sks~L~~H~k~vHsgef~~~~~~~~ 951 (1470)
.-.|.+| -.|.....|+.|+...|. .+.|..|-. ..-+...|.+|+..--.++
T Consensus 115 ~~~~~~c-~~~~s~~~Lk~H~~~~H~--------~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~--------- 176 (669)
T KOG2231|consen 115 KKECLHC-TEFKSVENLKNHMRDQHK--------LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDD--------- 176 (669)
T ss_pred cCCCccc-cchhHHHHHHHHHHHhhh--------hhccccccccceeeeeeeehehHHHHHHHHhcCCCcc---------
Confidence 4567777 667777788888765554 234544421 1224556666653211111
Q ss_pred cccc-ccccCCcccccCChhHHHhhhhhcCCccccccccc------CCccCChhhHHHHhhhhccCCCCCCCCCcccCCC
Q 000476 952 HNQS-VGEDSPKKLELGYSASVENHSENLGSIRKFICRFC------GLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIR 1024 (1470)
Q Consensus 952 kpy~-C~~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC~~C------gKsF~sks~LkrH~~r~Htge~l~~eKpykC~iC 1024 (1470)
..+. -..|..|...|-....|..|++.++ |.|.+| +.-|.....|..|.+..|--- .+....+..+
T Consensus 177 ~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~HflC---E~~~C~~~~f 249 (669)
T KOG2231|consen 177 ESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLC---EEEFCRTKKF 249 (669)
T ss_pred ccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcCccc---ccccccccee
Confidence 1111 1234444777777777777776655 455555 344666777777744444320 0011122222
Q ss_pred CcccCChhhhhhhcccccCCCccccC
Q 000476 1025 FYAYKLKSGRLSRPRFKKGLGAVSYR 1050 (1470)
Q Consensus 1025 gKsF~~ks~L~~H~r~H~gekpy~C~ 1050 (1470)
-..|.....|+.|.+.+.-++.|.|.
T Consensus 250 ~~~~~~ei~lk~~~~~~~~e~~~~~~ 275 (669)
T KOG2231|consen 250 YVAFELEIELKAHNRFIQHEKCYICR 275 (669)
T ss_pred eehhHHHHHHHhhccccchheeccCC
Confidence 23334455566666555556666664
No 47
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.07 E-value=0.0094 Score=43.01 Aligned_cols=23 Identities=35% Similarity=0.782 Sum_probs=19.7
Q ss_pred ccccccCCccCChhhHHHHhhhhc
Q 000476 985 FICRFCGLKFDLLPDLGRHHQAAH 1008 (1470)
Q Consensus 985 fkC~~CgKsF~sks~LkrH~~r~H 1008 (1470)
|+|+.|++.|.++..|.+| ++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H-~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRH-MRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHH-HHHH
T ss_pred CCCCCCCCccCCHHHHHHH-HhHC
Confidence 6899999999999999999 5445
No 48
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.97 E-value=0.009 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.002 Sum_probs=10.1
Q ss_pred cccCCCCcccCChhhhhhhcccc
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPRFK 1041 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r~H 1041 (1470)
|.|++|++.|.+...|+.|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 34555555555555555554433
No 49
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.74 E-value=0.014 Score=43.73 Aligned_cols=25 Identities=12% Similarity=-0.083 Sum_probs=13.7
Q ss_pred CcccCCCCcccCChhhhhhhccccc
Q 000476 1018 PHKKGIRFYAYKLKSGRLSRPRFKK 1042 (1470)
Q Consensus 1018 pykC~iCgKsF~~ks~L~~H~r~H~ 1042 (1470)
+|+|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 3555555555555555555555543
No 50
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.60 E-value=0.027 Score=67.50 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.6
Q ss_pred ccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccccCCCccccCCCCC
Q 000476 989 FCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNR 1054 (1470)
Q Consensus 989 ~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~gekpy~C~~Cgk 1054 (1470)
.|-..+.....+..| ...|.... ...+.+..|.+.|.....|..|++.|....++.|..++.
T Consensus 393 ~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (467)
T COG5048 393 SCIRNFKRDSNLSLH-IITHLSFR---PYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS 454 (467)
T ss_pred chhhhhccccccccc-cccccccC---CcCCCCCcchhhccCcccccccccccccCCceeeccccc
Confidence 366666777777776 66665511 235677778888888888888888887776666655443
No 51
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.59 E-value=0.015 Score=41.68 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=4.6
Q ss_pred CCCCCCChhhhhhh
Q 000476 921 CGSHFGNTEELWLH 934 (1470)
Q Consensus 921 CgK~F~sks~L~~H 934 (1470)
|++.|.+...|+.|
T Consensus 6 C~~~~~~~~~l~~H 19 (24)
T PF13894_consen 6 CGKSFRSKSELRQH 19 (24)
T ss_dssp TS-EESSHHHHHHH
T ss_pred CCCcCCcHHHHHHH
Confidence 33333333333333
No 52
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=93.79 E-value=0.025 Score=42.45 Aligned_cols=22 Identities=23% Similarity=0.619 Sum_probs=9.0
Q ss_pred ccccccCccccChhhhhhhhhh
Q 000476 882 YACAICLDSFTNKKVLESHVQE 903 (1470)
Q Consensus 882 ykC~~CgKsF~sks~L~~H~r~ 903 (1470)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCccCCccCChhHHHHHhHH
Confidence 3344444444444444444433
No 53
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=93.65 E-value=0.039 Score=73.62 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=98.6
Q ss_pred ccccCccccChhhhhhhhhhcccccchhhcccccccCCCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcc
Q 000476 884 CAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKK 963 (1470)
Q Consensus 884 C~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~ 963 (1470)
|.-|+..|..+..+.-|+..-+... +.|.|+.|+..|+....|-.|||..|..- .. ..|
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~-----kt~~cpkc~~~yk~a~~L~vhmRskhp~~---------~~---~~c---- 497 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFF-----KTLKCPKCNWHYKLAQTLGVHMRSKHPES---------QS---AYC---- 497 (1406)
T ss_pred ccchhhhhhhhcccccceeeeeccc-----ccccCCccchhhhhHHHhhhccccccccc---------ch---hHh----
Confidence 4455566666666666665544433 36778888888888888888877766532 00 122
Q ss_pred cccCChhHHHhhhhh------cCCcccccccccCCccCChhhHHHHhhhh-ccC--------------------------
Q 000476 964 LELGYSASVENHSEN------LGSIRKFICRFCGLKFDLLPDLGRHHQAA-HMG-------------------------- 1010 (1470)
Q Consensus 964 ~~F~sss~L~~H~r~------HtgeKpfkC~~CgKsF~sks~LkrH~~r~-Htg-------------------------- 1010 (1470)
..-+.|.+. -.+-++|.|..|..++..+.+|..|++.. |..
T Consensus 498 ------~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~ 571 (1406)
T KOG1146|consen 498 ------KAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPE 571 (1406)
T ss_pred ------HhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcc
Confidence 011122211 12336788888888888888888884431 211
Q ss_pred ---------C-CCCCCCCcccCCCCcccCChhhhhhhcc-cccCCCccccCCCCCcCCChHHHHhhcCCC
Q 000476 1011 ---------P-NLVNSRPHKKGIRFYAYKLKSGRLSRPR-FKKGLGAVSYRIRNRGAAGMKKRIQTLKPL 1069 (1470)
Q Consensus 1011 ---------e-~l~~eKpykC~iCgKsF~~ks~L~~H~r-~H~gekpy~C~~CgksF~~~s~L~kHkksh 1069 (1470)
. .+...-.+.|.+|++--.-..+|+.||. .|+---|.-|-.|+-.+..-..+..+.+-+
T Consensus 572 ~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 572 EAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred cccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence 0 0112446899999999999999999994 444334477777777777666666666644
No 54
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=93.33 E-value=0.035 Score=48.10 Aligned_cols=31 Identities=6% Similarity=-0.108 Sum_probs=17.9
Q ss_pred CCCcccCCCCcccCChhhhhhhcccccCCCc
Q 000476 1016 SRPHKKGIRFYAYKLKSGRLSRPRFKKGLGA 1046 (1470)
Q Consensus 1016 eKpykC~iCgKsF~~ks~L~~H~r~H~gekp 1046 (1470)
+.|..|++|+..+.+..+|++|+..+++.||
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 6677777777777777777777766666554
No 55
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=92.80 E-value=0.032 Score=74.42 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=95.2
Q ss_pred ccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhcccccchh-----------------
Q 000476 849 KCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVE----------------- 911 (1470)
Q Consensus 849 kC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~----------------- 911 (1470)
.|..|+..+.+...+.-|+...|... +.|+|+.|+..|+....|..|||..|.+....
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~~-----kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~ 512 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSFF-----KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVY 512 (1406)
T ss_pred cccchhhhhhhhcccccceeeeeccc-----ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccc
Confidence 35556667777777777766666555 77888888888888888888888744332111
Q ss_pred --hcccccccCCCCCCCChhhhhhhhhhh-ccccc--------------------------------cchhhhhcccccc
Q 000476 912 --QCMLQQCIPCGSHFGNTEELWLHVQSV-HAIDF--------------------------------KMSEVAQQHNQSV 956 (1470)
Q Consensus 912 --~~kpfkC~~CgK~F~sks~L~~H~k~v-Hsgef--------------------------------~~~~~~~~kpy~C 956 (1470)
..++|.|..|...+..+..|..|++.. |..+. -......+-.+.|
T Consensus 513 ~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C 592 (1406)
T KOG1146|consen 513 RCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRC 592 (1406)
T ss_pred cCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcch
Confidence 126899999999999999999998743 32210 0000111224566
Q ss_pred cccCCcccccCChhHHHhhhhh-cCCcccccccccCCccCChhhHHHHhhhhc
Q 000476 957 GEDSPKKLELGYSASVENHSEN-LGSIRKFICRFCGLKFDLLPDLGRHHQAAH 1008 (1470)
Q Consensus 957 ~~Cp~c~~~F~sss~L~~H~r~-HtgeKpfkC~~CgKsF~sks~LkrH~~r~H 1008 (1470)
..| +..-.-...|+.||.. |+..-|..|-.|+-.+.....|..| .+.|
T Consensus 593 ~vc---~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~-~~lp 641 (1406)
T KOG1146|consen 593 EVC---SYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQ-GRLP 641 (1406)
T ss_pred hhh---cchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCc-CCCC
Confidence 666 4444444456666642 3333446677777777777666666 6666
No 56
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.69 E-value=0.072 Score=61.84 Aligned_cols=126 Identities=18% Similarity=0.150 Sum_probs=81.7
Q ss_pred cccccC--CCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcccccC------ChhHHHhhhhhcCCccc--
Q 000476 915 LQQCIP--CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELG------YSASVENHSENLGSIRK-- 984 (1470)
Q Consensus 915 pfkC~~--CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~------sss~L~~H~r~HtgeKp-- 984 (1470)
.|.|+. |.........|..|.+..|. .+.|.+|-.-.+.|. +++.|..|...-..+.-
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~------------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFK 218 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG------------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK 218 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC------------cEEhHhhhcCcccCccceeeeecccccccccCCccccCcC
Confidence 477765 66666667888889887774 567777755455554 34567777654333222
Q ss_pred --ccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcc-------cCChhhhhhhcccccCCCccccCC--C-
Q 000476 985 --FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA-------YKLKSGRLSRPRFKKGLGAVSYRI--R- 1052 (1470)
Q Consensus 985 --fkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKs-------F~~ks~L~~H~r~H~gekpy~C~~--C- 1052 (1470)
-.|..|...|-.-..|.+|.+..|.. |.+|++. |..-..|..|.+.-+ |.|.. |
T Consensus 219 GHP~C~FC~~~FYdDDEL~~HcR~~HE~----------ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~ 284 (493)
T COG5236 219 GHPLCIFCKIYFYDDDELRRHCRLRHEA----------CHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCR 284 (493)
T ss_pred CCchhhhccceecChHHHHHHHHhhhhh----------hhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEe
Confidence 25888999999989999986666654 6666654 777778888875322 44432 2
Q ss_pred ---CCcCCChHHHHhhc
Q 000476 1053 ---NRGAAGMKKRIQTL 1066 (1470)
Q Consensus 1053 ---gksF~~~s~L~kHk 1066 (1470)
-..|.....|..|.
T Consensus 285 ~~k~~vf~~~~el~~h~ 301 (493)
T COG5236 285 VGKCYVFPYHTELLEHL 301 (493)
T ss_pred cCcEEEeccHHHHHHHH
Confidence 23456666666664
No 57
>smart00355 ZnF_C2H2 zinc finger.
Probab=92.32 E-value=0.068 Score=38.63 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=9.1
Q ss_pred cccccCCccCChhhHHHH
Q 000476 986 ICRFCGLKFDLLPDLGRH 1003 (1470)
Q Consensus 986 kC~~CgKsF~sks~LkrH 1003 (1470)
.|+.|++.|.....|..|
T Consensus 2 ~C~~C~~~f~~~~~l~~H 19 (26)
T smart00355 2 RCPECGKVFKSKSALKEH 19 (26)
T ss_pred CCCCCcchhCCHHHHHHH
Confidence 445555555555555554
No 58
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.17 E-value=0.099 Score=62.64 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=110.8
Q ss_pred CccccCcCCccccChhHHhhhhhh--cccchhhhccCccccc--ccCccccChhhhhhhhhhcccccchhhcccccccC-
Q 000476 846 KTHKCKICSQVFLHDQELGVHWMD--NHKKEAQWLFRGYACA--ICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIP- 920 (1470)
Q Consensus 846 kpykC~~CgKsF~s~s~L~~H~~~--~Ht~e~~~~~KpykC~--~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~- 920 (1470)
.++.|..|...|.....|..| .. .|..+. .+++.|+ .|++.|.....+..|...|.+.. ++.|..
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~-~~~~~h~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 357 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRH-LRSVNHSGES---LKPFSCPYSLCGKLFSRNDALKRHILLHTSIS------PAKEKLL 357 (467)
T ss_pred cCCCCccccCCcccccccccc-cccccccccc---CCceeeeccCCCccccccccccCCcccccCCC------ccccccc
Confidence 578999999999999999999 55 787762 2689999 79999999999999999999887 555544
Q ss_pred -CCCCCCChhhhhhhhhhhccccccchhhhhcccccccccCCcccccCChhHHHhhhhhcCCcc--cccccccCCccCCh
Q 000476 921 -CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIR--KFICRFCGLKFDLL 997 (1470)
Q Consensus 921 -CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~Cp~c~~~F~sss~L~~H~r~HtgeK--pfkC~~CgKsF~sk 997 (1470)
|.+.+.....-..+.. .+... .........+..- .|...+.....+..|...|...+ .+.|..|.+.|...
T Consensus 358 ~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (467)
T COG5048 358 NSSSKFSPLLNNEPPQS-LQQYK----DLKNDKKSETLSN-SCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH 431 (467)
T ss_pred cCccccccccCCCCccc-hhhcc----CccCCcccccccc-chhhhhccccccccccccccccCCcCCCCCcchhhccCc
Confidence 4444443333111110 00000 0001122222221 33555666667777877777665 57789999999999
Q ss_pred hhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhh
Q 000476 998 PDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSR 1037 (1470)
Q Consensus 998 s~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H 1037 (1470)
..|..| ++.|.. ..++.|. +-+.|.....+..|
T Consensus 432 ~~~~~~-~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~ 464 (467)
T COG5048 432 YNLIPH-KKIHTN-----HAPLLCS-ILKSFRRDLDLSNH 464 (467)
T ss_pred cccccc-cccccc-----CCceeec-cccccchhhhhhcc
Confidence 999999 888876 4444444 44445544444443
No 59
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=91.96 E-value=0.049 Score=67.77 Aligned_cols=89 Identities=34% Similarity=0.527 Sum_probs=61.0
Q ss_pred ceeecc-CCCCCCCCCCCCccccccceeeEEEEeecCccccceecccccCCcEEEEeeccccCHHHHHHHHhhccCCC--
Q 000476 1353 YLIYEC-NHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG-- 1429 (1470)
Q Consensus 1353 ~~IyEC-n~~C~C~~~C~NRvvq~g~~~~LeVfrT~~kGwGVra~~~I~kG~FI~EYvGEvIt~~ea~~R~~~y~~~~-- 1429 (1470)
...+|| +..|.+...|.|+..-...... ..+ .+..+|.+| +|++|+..+...|...-....
T Consensus 287 ~~~~~~~p~~~~~~~~~~~~~~sk~~~~e-------~~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~ 350 (463)
T KOG1081|consen 287 MLAYEVHPKVCSAEERCHNQQFSKESYPE-------PQK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLV 350 (463)
T ss_pred hhhhhhcccccccccccccchhhhhcccc-------cch---hhHHhhhcc------cCcccchhhheeehhhhhccchh
Confidence 345555 7889999899998665444333 222 788888888 999999999887764422221
Q ss_pred CcEEEEeCccccccccccCCCCcEEEeccCCCChhccccCC
Q 000476 1430 CGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHR 1470 (1470)
Q Consensus 1430 ~~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHS 1470 (1470)
.-|+..+.. ..+||+..+||.+||+|||
T Consensus 351 ~~~~~~~e~-------------~~~id~~~~~n~sr~~nh~ 378 (463)
T KOG1081|consen 351 DFYMVFIQK-------------DRIIDAGPKGNYSRFLNHS 378 (463)
T ss_pred hhhhhhhhc-------------ccccccccccchhhhhccc
Confidence 123222222 1289999999999999997
No 60
>PRK04860 hypothetical protein; Provisional
Probab=91.49 E-value=0.079 Score=57.06 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=12.5
Q ss_pred ChhhhhhhcccccCCCccccCCCCCcC
Q 000476 1030 LKSGRLSRPRFKKGLGAVSYRIRNRGA 1056 (1470)
Q Consensus 1030 ~ks~L~~H~r~H~gekpy~C~~CgksF 1056 (1470)
....+++|.++|+++++|.|..|++.|
T Consensus 127 ~~~~~rrH~ri~~g~~~YrC~~C~~~l 153 (160)
T PRK04860 127 HQLTVRRHNRVVRGEAVYRCRRCGETL 153 (160)
T ss_pred eeCHHHHHHHHhcCCccEECCCCCcee
Confidence 344444444444444444444444444
No 61
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=90.09 E-value=0.28 Score=47.29 Aligned_cols=60 Identities=18% Similarity=0.474 Sum_probs=47.7
Q ss_pred EEEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCCCc
Q 000476 157 ALWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEFPQ 220 (1470)
Q Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (1470)
-+|+|.+| -|--|+-+...+.+... .+......|.|.||+ +++|.||+---|.+..++-.
T Consensus 6 lVwaK~~g~pwWPa~V~~~~~~~~~~---~~~~~~~~~~V~Ffg-~~~~~wv~~~~l~pf~~~~~ 66 (87)
T cd05162 6 LVWAKMKGYPWWPALVVDPPKDSKKA---KKKAKEGKVLVLFFG-DKTFAWVGAERLKPFTEHKE 66 (87)
T ss_pred EEEEeCCCCCCCCEEEccccccchhh---hccCCCCEEEEEEeC-CCcEEEeCccceeeccchHH
Confidence 48999999 78888888777776543 233345689999999 99999999999988887653
No 62
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=90.03 E-value=0.13 Score=45.06 Aligned_cols=26 Identities=31% Similarity=0.735 Sum_probs=22.8
Q ss_pred CceeeccCCCCCCCCCCCCccccccc
Q 000476 1352 GYLIYECNHMCSCDRTCPNRVLQNGV 1377 (1470)
Q Consensus 1352 ~~~IyECn~~C~C~~~C~NRvvq~g~ 1377 (1470)
+.+.+||+..|+|+..|.||.+|+..
T Consensus 25 R~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 25 RMLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred HHHhhhcCCCCCCCcCccCcccccCc
Confidence 34678999999999999999999864
No 63
>smart00355 ZnF_C2H2 zinc finger.
Probab=89.93 E-value=0.21 Score=36.01 Aligned_cols=24 Identities=17% Similarity=-0.100 Sum_probs=21.1
Q ss_pred cccCCCCcccCChhhhhhhccccc
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPRFKK 1042 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r~H~ 1042 (1470)
|.|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 579999999999999999998775
No 64
>PRK04860 hypothetical protein; Provisional
Probab=89.71 E-value=0.16 Score=54.76 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=24.9
Q ss_pred cccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCCh
Q 000476 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLK 1031 (1470)
Q Consensus 984 pfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~k 1031 (1470)
+|.|. |++ ....+++| .++|++ +++|.|..|+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH-~ri~~g-----~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRH-NRVVRG-----EAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHH-HHHhcC-----CccEECCCCCceeEEe
Confidence 56676 666 55566666 777776 6677777777666543
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.66 E-value=0.39 Score=56.06 Aligned_cols=138 Identities=22% Similarity=0.310 Sum_probs=80.7
Q ss_pred cccCc--CCccccChhHHhhhhhhcccchhhhccCcccccccC---ccccC------hhhhhhhhhhcccccchhhcccc
Q 000476 848 HKCKI--CSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICL---DSFTN------KKVLESHVQERHHVQFVEQCMLQ 916 (1470)
Q Consensus 848 ykC~~--CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~Cg---KsF~s------ks~L~~H~r~Hhgek~~~~~kpf 916 (1470)
|.||. |.........|+.|.+..|. .+-|.+|- +.|.. +..|..|...-..+.... .-=
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~--------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFK--GHP 221 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHG--------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK--GHP 221 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcC--------cEEhHhhhcCcccCccceeeeecccccccccCCccccCcC--CCc
Confidence 88876 77777778889999666663 36788884 33443 445556644322221000 123
Q ss_pred cccCCCCCCCChhhhhhhhhhhccccccchhhhhccccccccc-CCcccccCChhHHHhhhhhcCCcccccccc--cC--
Q 000476 917 QCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED-SPKKLELGYSASVENHSENLGSIRKFICRF--CG-- 991 (1470)
Q Consensus 917 kC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~~C-p~c~~~F~sss~L~~H~r~HtgeKpfkC~~--Cg-- 991 (1470)
.|..|.+.|-.-..|.+|++..|. +-|.|+.- |..-.-|.+...|..|.+.-+ |.|.+ |-
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~HE-----------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~ 286 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRHE-----------ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVG 286 (493)
T ss_pred hhhhccceecChHHHHHHHHhhhh-----------hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecC
Confidence 699999999999999999987774 23333322 111223556666666664322 33321 21
Q ss_pred --CccCChhhHHHHhhhhccC
Q 000476 992 --LKFDLLPDLGRHHQAAHMG 1010 (1470)
Q Consensus 992 --KsF~sks~LkrH~~r~Htg 1010 (1470)
..|.....|..|+.+.|..
T Consensus 287 k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 287 KCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred cEEEeccHHHHHHHHHHHhhc
Confidence 3466666677776666644
No 66
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=88.65 E-value=0.33 Score=47.85 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=48.9
Q ss_pred EEEEEeccc-cccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhcccccc
Q 000476 157 ALWVKWRGK-WQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIN 216 (1470)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1470)
-+|.|-+|- |=-|+=|...+-|-.-|++++......|.|.||+. ++|.|++--.+.+..
T Consensus 6 lVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~-~~~~Wv~~~~l~pl~ 65 (93)
T cd05840 6 RVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPD-GDYYWVPNKDLKPLT 65 (93)
T ss_pred EEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCC-CcEEEEChhhcccCC
Confidence 389999994 66777777777888888888888899999999995 699999887777665
No 67
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=87.82 E-value=0.19 Score=36.80 Aligned_cols=22 Identities=18% Similarity=-0.055 Sum_probs=10.7
Q ss_pred cccCCCCcccCChhhhhhhcccc
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPRFK 1041 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r~H 1041 (1470)
|+|+.|++... +..|.+|++.|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 45555555555 55555555544
No 68
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=87.77 E-value=0.23 Score=43.28 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=16.2
Q ss_pred CcccccccCccccChhhhhhhhhhccccc
Q 000476 880 RGYACAICLDSFTNKKVLESHVQERHHVQ 908 (1470)
Q Consensus 880 KpykC~~CgKsF~sks~L~~H~r~Hhgek 908 (1470)
.|-.|++|+..+.+..+|++|+..+|+.+
T Consensus 23 ~PatCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 23 QPATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp --EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCcchhhccchhhHHHHHHHHhccc
Confidence 56667777777777777777776666654
No 69
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=86.67 E-value=0.25 Score=36.31 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=11.8
Q ss_pred cccCCCCcccCChhhhhhhcc
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPR 1039 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r 1039 (1470)
|.|.+|++.|.+...|+.|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 345555555555555555554
No 70
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=84.96 E-value=0.79 Score=54.83 Aligned_cols=52 Identities=12% Similarity=-0.051 Sum_probs=39.3
Q ss_pred CCCcccCCCCcccCChhhhhhhcccccCC-----------------------CccccCCCC---CcCCChHHHHhhcC
Q 000476 1016 SRPHKKGIRFYAYKLKSGRLSRPRFKKGL-----------------------GAVSYRIRN---RGAAGMKKRIQTLK 1067 (1470)
Q Consensus 1016 eKpykC~iCgKsF~~ks~L~~H~r~H~ge-----------------------kpy~C~~Cg---ksF~~~s~L~kHkk 1067 (1470)
.-|-.|-+|++.|.+-..-..||..|+|. .-+.|-.|+ +.|.++...++|+.
T Consensus 164 ~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~ 241 (390)
T KOG2785|consen 164 LIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR 241 (390)
T ss_pred cCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence 34567778888888888888888777665 235677777 88999999999876
No 71
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=84.83 E-value=0.86 Score=53.49 Aligned_cols=52 Identities=2% Similarity=-0.302 Sum_probs=35.4
Q ss_pred cccCCCCcccCChhhhhhhcc-cccC--------------------------CCccccCCCCCcCCChHHHHhhcCCCC
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPR-FKKG--------------------------LGAVSYRIRNRGAAGMKKRIQTLKPLA 1070 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r-~H~g--------------------------ekpy~C~~CgksF~~~s~L~kHkksh~ 1070 (1470)
-.|-+|....-+...|..||+ +|.= .+...|-.|.-.|-....|..|+-.+.
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k 358 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDK 358 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccccc
Confidence 478888887777888888884 3310 022346778888888888888876443
No 72
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=84.08 E-value=0.42 Score=35.10 Aligned_cols=19 Identities=37% Similarity=0.889 Sum_probs=7.9
Q ss_pred ccccCccccChhhhhhhhh
Q 000476 884 CAICLDSFTNKKVLESHVQ 902 (1470)
Q Consensus 884 C~~CgKsF~sks~L~~H~r 902 (1470)
|.+|++.|.+...|..|++
T Consensus 3 C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 3 CDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp ETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHC
Confidence 4444444444444444433
No 73
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=83.70 E-value=0.47 Score=34.71 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=6.6
Q ss_pred ccccCccccChhhhhhhhhh
Q 000476 884 CAICLDSFTNKKVLESHVQE 903 (1470)
Q Consensus 884 C~~CgKsF~sks~L~~H~r~ 903 (1470)
|+.|+.... +..|.+|++.
T Consensus 3 C~~C~y~t~-~~~l~~H~~~ 21 (24)
T PF13909_consen 3 CPHCSYSTS-KSNLKRHLKR 21 (24)
T ss_dssp -SSSS-EES-HHHHHHHHHH
T ss_pred CCCCCCcCC-HHHHHHHHHh
Confidence 344433333 3334444333
No 74
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=83.54 E-value=0.66 Score=35.05 Aligned_cols=22 Identities=0% Similarity=-0.277 Sum_probs=14.4
Q ss_pred cccCCCCcccCChhhhhhhccc
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPRF 1040 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r~ 1040 (1470)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5566666666666666666643
No 75
>PF11722 zf-TRM13_CCCH: CCCH zinc finger in TRM13 protein; InterPro: IPR021721 This domain is found at the N terminus of TRM13 methyltransferase proteins. It is presumed to be a zinc binding domain. ; GO: 0008168 methyltransferase activity
Probab=83.31 E-value=0.38 Score=37.99 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=27.0
Q ss_pred cccchhhhhcCceeeEeecCCceEEEEec
Q 000476 533 RQCTAFIESKGRQCVRWANEGDVYCCVHL 561 (1470)
Q Consensus 533 ~~c~a~~~~kgrqc~r~a~~~~~ycc~h~ 561 (1470)
-+|.-||+.|.|.|.=.+..|..||--|+
T Consensus 2 ~~C~f~l~~K~R~C~m~~~~g~~fC~~H~ 30 (31)
T PF11722_consen 2 GRCEFFLPRKKRFCKMTRKPGSRFCGEHM 30 (31)
T ss_pred CcceEECCccccccCCeecCcCCccccCC
Confidence 37999999999999999999999999885
No 76
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=0.27 Score=53.86 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=67.0
Q ss_pred Ccccccc--cCccccChhhhhhhhhhcccccchhhcccccccCCCCCCCChhhhhhhhhhhccccccchhhhhccccccc
Q 000476 880 RGYACAI--CLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVG 957 (1470)
Q Consensus 880 KpykC~~--CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F~sks~L~~H~k~vHsgef~~~~~~~~kpy~C~ 957 (1470)
+.|.|++ |...|.....+..|..+.|+.. |..|.+.|.+...|..|+...|..-|.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~s---------Cs~C~r~~Pt~hLLd~HI~E~HDs~Fq------------- 135 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGNS---------CSFCKRAFPTGHLLDAHILEWHDSLFQ------------- 135 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccch---------hHHHHHhCCchhhhhHHHHHHHHHHHH-------------
Confidence 4577876 7788888888888888777764 999999999999999998766642111
Q ss_pred ccCCcccccCChhHHHhhhhhcCCcccccc--cccCCccCChhhHHHHhhhhccC
Q 000476 958 EDSPKKLELGYSASVENHSENLGSIRKFIC--RFCGLKFDLLPDLGRHHQAAHMG 1010 (1470)
Q Consensus 958 ~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC--~~CgKsF~sks~LkrH~~r~Htg 1010 (1470)
..+-.|.-.|+| ..|+..|++....+.|+.+.|.=
T Consensus 136 ------------------a~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~ 172 (253)
T KOG4173|consen 136 ------------------ALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHKY 172 (253)
T ss_pred ------------------HHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhccC
Confidence 112234455777 56888888888888887788864
No 77
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=81.72 E-value=2.2 Score=51.21 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=43.5
Q ss_pred ccccccccCCccCChhhHHHHhhhhccCCCC------------------CCCCCcccCCCC---cccCChhhhhhhcc
Q 000476 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNL------------------VNSRPHKKGIRF---YAYKLKSGRLSRPR 1039 (1470)
Q Consensus 983 KpfkC~~CgKsF~sks~LkrH~~r~Htge~l------------------~~eKpykC~iCg---KsF~~ks~L~~H~r 1039 (1470)
-|-.|-.|++.|++...-..| +..|.|--+ ....-|.|-.|+ +.|.+-...+.||.
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~H-M~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~ 241 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKH-MFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR 241 (390)
T ss_pred CCcceeecCCCcccHHHHHHH-HhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence 357799999999999999999 444444100 114568999999 99999999999993
No 78
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=80.61 E-value=0.79 Score=34.62 Aligned_cols=21 Identities=24% Similarity=0.695 Sum_probs=9.9
Q ss_pred ccccccCccccChhhhhhhhh
Q 000476 882 YACAICLDSFTNKKVLESHVQ 902 (1470)
Q Consensus 882 ykC~~CgKsF~sks~L~~H~r 902 (1470)
|.|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 344444444444444444444
No 79
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.29 E-value=0.94 Score=49.87 Aligned_cols=93 Identities=15% Similarity=0.015 Sum_probs=70.0
Q ss_pred ccccccccCCcccccCChhHHHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccC----CCCCCCCCcccCC--CC
Q 000476 952 HNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMG----PNLVNSRPHKKGI--RF 1025 (1470)
Q Consensus 952 kpy~C~~Cp~c~~~F~sss~L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htg----e~l~~eKpykC~i--Cg 1025 (1470)
..+.|..- +|...|.+..+...|..+-++ -.|.+|.+.|.+..-|..|+...|.. ....+...|+|-+ |+
T Consensus 78 ~~~~cqva-gc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt 153 (253)
T KOG4173|consen 78 PAFACQVA-GCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCT 153 (253)
T ss_pred cccccccc-chHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhh
Confidence 45677775 668888887788888755333 37999999999999999998887742 0001156899966 99
Q ss_pred cccCChhhhhhhc-ccccCCCccc
Q 000476 1026 YAYKLKSGRLSRP-RFKKGLGAVS 1048 (1470)
Q Consensus 1026 KsF~~ks~L~~H~-r~H~gekpy~ 1048 (1470)
..|.+....+.|| ++|.=...|.
T Consensus 154 ~KFkT~r~RkdH~I~~Hk~Pa~fr 177 (253)
T KOG4173|consen 154 EKFKTSRDRKDHMIRMHKYPADFR 177 (253)
T ss_pred hhhhhhhhhhhHHHHhccCCccee
Confidence 9999999999999 7776444444
No 80
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=75.39 E-value=2.2 Score=50.25 Aligned_cols=21 Identities=10% Similarity=-0.064 Sum_probs=15.6
Q ss_pred cccCCCCcccCChhhhhhhcc
Q 000476 1019 HKKGIRFYAYKLKSGRLSRPR 1039 (1470)
Q Consensus 1019 ykC~iCgKsF~~ks~L~~H~r 1039 (1470)
-.|-.|.-.|-....|..||.
T Consensus 335 ~~c~~cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 335 SRCAECDLSFWKEPGLLIHMV 355 (423)
T ss_pred cccccccccccCcchhhhhcc
Confidence 346677778888888888883
No 81
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=74.77 E-value=1.8 Score=44.43 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=26.5
Q ss_pred cccceecccccCCcEEEEeeccccCHHHHHH
Q 000476 1390 GWAVRAGQAILRGTFVCEYIGEVLDELETNK 1420 (1470)
Q Consensus 1390 GwGVra~~~I~kG~FI~EYvGEvIt~~ea~~ 1420 (1470)
|.||+|..+|++|++|+++.+.+|+..++..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~ 31 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSP 31 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHC
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhh
Confidence 8999999999999999999999999887754
No 82
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=74.07 E-value=1.2 Score=49.75 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=34.4
Q ss_pred ccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhc-cccc
Q 000476 987 CRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRP-RFKK 1042 (1470)
Q Consensus 987 C~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~-r~H~ 1042 (1470)
|-+|++.|....-|.+| ++ .|-|+|.+|.|...+--.|..|- ++|.
T Consensus 13 cwycnrefddekiliqh-qk---------akhfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQH-QK---------AKHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeecccccchhhhhhhh-hh---------hccceeeeehhhhccCCCceeehhhhhh
Confidence 88888888888888777 32 45678888888888888887775 5554
No 83
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=69.39 E-value=3.9 Score=50.38 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=51.9
Q ss_pred ceeeEEEEeec--CccccceecccccCCcEEEEeeccc-cCHHHHHHHHhhccCCCCcEEEEeCccccccccccCCCCcE
Q 000476 1377 VRVKLEVFKTE--NKGWAVRAGQAILRGTFVCEYIGEV-LDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRY 1453 (1470)
Q Consensus 1377 ~~~~LeVfrT~--~kGwGVra~~~I~kG~FI~EYvGEv-It~~ea~~R~~~y~~~~~~Ylf~l~~~~~~~~~~~~~~~~~ 1453 (1470)
+...|.|..+. ..|.||.+...|++|+--+-|+||+ ++.++ ...+..|++.+-.. +..-+
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~--------~~~n~~y~W~I~~~---------d~~~~ 88 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS--------KSANNRYMWEIFSS---------DNGYE 88 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc--------ccccCcceEEEEeC---------CCceE
Confidence 45567777664 4789999999999999999999998 32211 01123455544321 12358
Q ss_pred EEeccC--CCChhcccc
Q 000476 1454 VIDATK--YGNVSRFIN 1468 (1470)
Q Consensus 1454 ~IDA~~--~GNvaRFIN 1468 (1470)
+||++. ..|+.||+|
T Consensus 89 ~iDg~d~~~sNWmRYV~ 105 (396)
T KOG2461|consen 89 YIDGTDEEHSNWMRYVN 105 (396)
T ss_pred EeccCChhhcceeeeec
Confidence 999987 589999998
No 84
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=66.40 E-value=6.2 Score=40.12 Aligned_cols=63 Identities=17% Similarity=0.374 Sum_probs=45.8
Q ss_pred EEEEEeccc-cccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCCC
Q 000476 157 ALWVKWRGK-WQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEFP 219 (1470)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1470)
-+|.|=+|- |--|+-+...+=|..+.+..+....+.|.|.||..+.+|.||.---+.++.+.-
T Consensus 8 lVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf~~~~ 71 (110)
T cd05837 8 LVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPFKGSK 71 (110)
T ss_pred EEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHccccCCch
Confidence 479999884 666666654444444444445555689999999999999999988888877654
No 85
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=61.29 E-value=3.9 Score=32.31 Aligned_cols=21 Identities=0% Similarity=-0.236 Sum_probs=13.4
Q ss_pred CcccCCCCcccCChhhhhhhc
Q 000476 1018 PHKKGIRFYAYKLKSGRLSRP 1038 (1470)
Q Consensus 1018 pykC~iCgKsF~~ks~L~~H~ 1038 (1470)
+|.|.+|++.|.....+..|+
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~ 23 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHL 23 (35)
T ss_pred CeEccccCCccCCHHHHHHHH
Confidence 456666666666666666666
No 86
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=60.09 E-value=4.8 Score=30.24 Aligned_cols=16 Identities=50% Similarity=0.939 Sum_probs=6.3
Q ss_pred ccccCccccChhhhhhh
Q 000476 884 CAICLDSFTNKKVLESH 900 (1470)
Q Consensus 884 C~~CgKsF~sks~L~~H 900 (1470)
|+.||+.| ....|.+|
T Consensus 5 C~~CgR~F-~~~~l~~H 20 (25)
T PF13913_consen 5 CPICGRKF-NPDRLEKH 20 (25)
T ss_pred CCCCCCEE-CHHHHHHH
Confidence 44444444 33333333
No 87
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=59.13 E-value=3 Score=39.79 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=30.0
Q ss_pred CCCC-CCcccC------------CcccccccCCCCCCc-cccccceeeeccC
Q 000476 1183 PHLE-PLPSVS------------AGIRSSDSSDFVNNQ-WEVDECHCIIDSR 1220 (1470)
Q Consensus 1183 ~pl~-p~~~~~------------~~~k~v~~~~p~~~~-w~~~e~h~~l~~~ 1220 (1470)
+|+. |++.|| .++..|.|.+|||.. +.+.|++.||...
T Consensus 2 ~~~~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~ 53 (77)
T smart00391 2 DPLRLPLPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYLHKN 53 (77)
T ss_pred CcccCCCCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHHHhC
Confidence 3555 777788 145679999999999 9999999988753
No 88
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=59.06 E-value=7.4 Score=46.28 Aligned_cols=27 Identities=19% Similarity=0.597 Sum_probs=14.8
Q ss_pred ccccCcCCccccChhHHhhhhhhcccc
Q 000476 847 THKCKICSQVFLHDQELGVHWMDNHKK 873 (1470)
Q Consensus 847 pykC~~CgKsF~s~s~L~~H~~~~Ht~ 873 (1470)
-|.|++|++.=.+...|..|....|..
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hpd 105 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHPE 105 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCcc
Confidence 455555555555555555555555543
No 89
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=56.73 E-value=6.7 Score=30.98 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.4
Q ss_pred cccccCCCCCCCChhhhhhhhh
Q 000476 915 LQQCIPCGSHFGNTEELWLHVQ 936 (1470)
Q Consensus 915 pfkC~~CgK~F~sks~L~~H~k 936 (1470)
+|.|+.|++.|.+...+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 6889999999999999999975
No 90
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=56.04 E-value=7.3 Score=29.31 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=17.8
Q ss_pred cccccCCCCCCCChhhhhhhhh
Q 000476 915 LQQCIPCGSHFGNTEELWLHVQ 936 (1470)
Q Consensus 915 pfkC~~CgK~F~sks~L~~H~k 936 (1470)
...|+.||+.| ....|.+|++
T Consensus 2 l~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 2 LVPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CCcCCCCCCEE-CHHHHHHHHH
Confidence 35799999999 7888999964
No 91
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.96 E-value=4.4 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=13.3
Q ss_pred ccccccccCCccCChhhHHHH
Q 000476 983 RKFICRFCGLKFDLLPDLGRH 1003 (1470)
Q Consensus 983 KpfkC~~CgKsF~sks~LkrH 1003 (1470)
+.+.||+|++.|.++.-+...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~ 24 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGK 24 (214)
T ss_pred CceECCCCCCeeeeeEEEcCC
Confidence 456777777777765544444
No 92
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=55.96 E-value=4.6 Score=35.98 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=27.6
Q ss_pred hcCCcccccccccCCccCChhhHHHHhhhhccC
Q 000476 978 NLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMG 1010 (1470)
Q Consensus 978 ~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htg 1010 (1470)
...||--+.|+.||+.|....+..+|+.+.|.-
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 346777899999999999999999998888753
No 93
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.00 E-value=21 Score=36.54 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=49.2
Q ss_pred ccccCcCCccccChhHHhhhhhhcccchh-hhc-------cCcccccccCccccChhhhhhhhhhcccccchhhcccccc
Q 000476 847 THKCKICSQVFLHDQELGVHWMDNHKKEA-QWL-------FRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQC 918 (1470)
Q Consensus 847 pykC~~CgKsF~s~s~L~~H~~~~Ht~e~-~~~-------~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC 918 (1470)
|-.|++|+-..-...+|.+. -.|.-.. .+. .....|--|.+.|....... .++ ......|+|
T Consensus 15 P~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~------~~~--~~~~~~y~C 84 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP------FDE--LKDSHRYVC 84 (112)
T ss_pred CCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccCcCCCCCCccccc------ccc--cccccceeC
Confidence 56788888777777777763 1221110 000 01224889999987654221 110 111236999
Q ss_pred cCCCCCCCChhhhhhhhhhhcc
Q 000476 919 IPCGSHFGNTEELWLHVQSVHA 940 (1470)
Q Consensus 919 ~~CgK~F~sks~L~~H~k~vHs 940 (1470)
+.|...|-..-+...|. ..|.
T Consensus 85 ~~C~~~FC~dCD~fiHe-~Lh~ 105 (112)
T TIGR00622 85 AVCKNVFCVDCDVFVHE-SLHC 105 (112)
T ss_pred CCCCCccccccchhhhh-hccC
Confidence 99999999888888884 4553
No 94
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=51.68 E-value=6.2 Score=44.46 Aligned_cols=41 Identities=24% Similarity=0.479 Sum_probs=20.2
Q ss_pred cCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhh
Q 000476 850 CKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESH 900 (1470)
Q Consensus 850 C~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H 900 (1470)
|=+|++.|....-|.+|++. |-|+|.+|.|...+--.|..|
T Consensus 13 cwycnrefddekiliqhqka----------khfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKA----------KHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhh----------ccceeeeehhhhccCCCceee
Confidence 44555555555555555211 335555555554444444444
No 95
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.14 E-value=25 Score=36.07 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.7
Q ss_pred cccccCCCCCCCChhhhhhh
Q 000476 915 LQQCIPCGSHFGNTEELWLH 934 (1470)
Q Consensus 915 pfkC~~CgK~F~sks~L~~H 934 (1470)
|..|+.||-.......|.+.
T Consensus 15 P~~CpiCgLtLVss~HLARS 34 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARS 34 (112)
T ss_pred CCcCCcCCCEEeccchHHHh
Confidence 67788888888888777766
No 96
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=49.02 E-value=19 Score=36.24 Aligned_cols=27 Identities=15% Similarity=-0.070 Sum_probs=23.0
Q ss_pred CCccc----CCCCcccCChhhhhhhcccccC
Q 000476 1017 RPHKK----GIRFYAYKLKSGRLSRPRFKKG 1043 (1470)
Q Consensus 1017 KpykC----~iCgKsF~~ks~L~~H~r~H~g 1043 (1470)
.-|.| ..|++.+.+...+++|++.++|
T Consensus 79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 45899 9999999999999999987764
No 97
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=45.28 E-value=6.7 Score=35.72 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=23.1
Q ss_pred cccccccCCCCCCc-cccccceeeeccC
Q 000476 1194 GIRSSDSSDFVNNQ-WEVDECHCIIDSR 1220 (1470)
Q Consensus 1194 ~~k~v~~~~p~~~~-w~~~e~h~~l~~~ 1220 (1470)
++..|.|.+|||.. +.+.|+..||..+
T Consensus 23 ~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 23 GKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CcceEEEECCCCceecCHHHHHHHHHhC
Confidence 45579999999988 9999999988765
No 98
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=45.14 E-value=11 Score=43.36 Aligned_cols=46 Identities=26% Similarity=0.600 Sum_probs=30.8
Q ss_pred ccccccCccccChhhhhhhhhhcccccchhhcccccccCCCCCCCChhhhhhhhh
Q 000476 882 YACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQ 936 (1470)
Q Consensus 882 ykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F~sks~L~~H~k 936 (1470)
|.|..||.... +..+.+|+-.-++. -|.|..|++.|.. .....|..
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn~-------~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRNA-------YFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccCC-------eeEEeeccccccc-chhhhhhh
Confidence 66777777655 34456677766664 4778888887776 66667754
No 99
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=41.65 E-value=9.3 Score=36.24 Aligned_cols=26 Identities=4% Similarity=-0.178 Sum_probs=22.0
Q ss_pred cccccccCCCCCCc-cccccceeeecc
Q 000476 1194 GIRSSDSSDFVNNQ-WEVDECHCIIDS 1219 (1470)
Q Consensus 1194 ~~k~v~~~~p~~~~-w~~~e~h~~l~~ 1219 (1470)
.+..|.|.+|||.. +++.|++.||..
T Consensus 23 ~~~dV~Y~aPcGKklRs~~ev~~yL~~ 49 (73)
T cd01397 23 IQGEVAYYAPCGKKLRQYPEVIKYLSK 49 (73)
T ss_pred ccceEEEECCCCcccccHHHHHHHHHh
Confidence 34468899999999 999999988874
No 100
>PHA00626 hypothetical protein
Probab=41.65 E-value=11 Score=33.89 Aligned_cols=15 Identities=7% Similarity=-0.389 Sum_probs=10.1
Q ss_pred CCcccCCCCcccCCh
Q 000476 1017 RPHKKGIRFYAYKLK 1031 (1470)
Q Consensus 1017 KpykC~iCgKsF~~k 1031 (1470)
..|+|+.||+.|+.-
T Consensus 22 nrYkCkdCGY~ft~~ 36 (59)
T PHA00626 22 DDYVCCDCGYNDSKD 36 (59)
T ss_pred cceEcCCCCCeechh
Confidence 467777777777643
No 101
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=41.35 E-value=29 Score=31.66 Aligned_cols=56 Identities=20% Similarity=0.433 Sum_probs=38.5
Q ss_pred EEEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccc
Q 000476 157 ALWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSI 215 (1470)
Q Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (1470)
-+|.|=+| -|--|+-+...+-|...++ +.-....|.|.||.. .+|.|++--.+.++
T Consensus 6 lVwaK~~G~p~WPa~V~~~~~~~~~~~~--~~~~~~~~~V~Ffg~-~~~awv~~~~l~p~ 62 (63)
T smart00293 6 LVWAKMKGFPWWPALVVSPKETPDNIRK--RKRFENLYPVLFFGD-KDTAWISSSKLFPL 62 (63)
T ss_pred EEEEECCCCCCCCeEEcCcccCChhHhh--ccCCCCEEEEEEeCC-CCEEEECccceeeC
Confidence 37999999 7777777766665554332 334456788888875 55699987766654
No 102
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=40.14 E-value=28 Score=33.08 Aligned_cols=56 Identities=23% Similarity=0.577 Sum_probs=38.4
Q ss_pred EEEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCCC
Q 000476 157 ALWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEFP 219 (1470)
Q Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1470)
-+|+|=+| -|=-|+=|...+.+- + ......|.|.||... +|.|++.-.|.+.+++-
T Consensus 6 lVWaK~~g~pwWPa~V~~~~~~~~-----~-~~~~~~~~V~Ffg~~-~~~wv~~~~i~~f~~~~ 62 (86)
T PF00855_consen 6 LVWAKLKGYPWWPARVCDPDEKSK-----K-KRKDGHVLVRFFGDN-DYAWVKPSNIKPFSEFK 62 (86)
T ss_dssp EEEEEETTSEEEEEEEEECCHCTS-----C-SSSSTEEEEEETTTT-EEEEEEGGGEEECCHHH
T ss_pred EEEEEeCCCCCCceEEeecccccc-----c-CCCCCEEEEEecCCC-CEEEECHHHhhChhhhH
Confidence 48999987 355666666664443 1 334466777777766 99999998888877544
No 103
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=37.54 E-value=14 Score=33.06 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=20.2
Q ss_pred ccCCCCccccCcCCccccChhHHhhhhhhccc
Q 000476 841 RSEDEKTHKCKICSQVFLHDQELGVHWMDNHK 872 (1470)
Q Consensus 841 ~H~gekpykC~~CgKsF~s~s~L~~H~~~~Ht 872 (1470)
...||..+.||-|++.|.......+|.-..|.
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 34556666777777777776666666545553
No 104
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=37.40 E-value=16 Score=45.48 Aligned_cols=19 Identities=42% Similarity=1.027 Sum_probs=16.6
Q ss_pred CCCcccCCCCccCCCCCccc
Q 000476 1299 QLGCACANSTCFPETCDHVY 1318 (1470)
Q Consensus 1299 ~~gC~C~~~~C~~~~C~C~~ 1318 (1470)
-+||+|. +-|+|++|+|.+
T Consensus 307 eCGCsCr-~~CdPETCaCSq 325 (640)
T KOG3813|consen 307 ECGCSCR-GVCDPETCACSQ 325 (640)
T ss_pred hhCCccc-ceeChhhcchhc
Confidence 5899999 599999999964
No 105
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=36.86 E-value=27 Score=34.67 Aligned_cols=54 Identities=26% Similarity=0.543 Sum_probs=34.1
Q ss_pred EEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhcccc
Q 000476 158 LWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRS 214 (1470)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1470)
+|+|-+| -|=-|+-|-..+=|-..+..+ +....|.|.|| .|++|.|++--.|-+
T Consensus 7 VWaK~~g~pwWPa~V~~~~~~p~~~~~~~--~~~~~~~V~Ff-gs~~y~Wv~~~~l~p 61 (95)
T cd05838 7 VWAKLGNFRWWPAIICDPREVPPNIQVLR--HCIGEFCVMFF-GTHDYYWVHRGRVFP 61 (95)
T ss_pred EEEECCCCCCCCeEEcChhhcChhHhhcc--CCCCeEEEEEe-CCCCEEEeccccccc
Confidence 7999998 555666665543333222211 23356888888 589999999744443
No 106
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.57 E-value=20 Score=28.62 Aligned_cols=8 Identities=13% Similarity=-0.147 Sum_probs=4.3
Q ss_pred CcccCCCC
Q 000476 1018 PHKKGIRF 1025 (1470)
Q Consensus 1018 pykC~iCg 1025 (1470)
++.|++|+
T Consensus 17 ~~~CP~Cg 24 (33)
T cd00350 17 PWVCPVCG 24 (33)
T ss_pred CCcCcCCC
Confidence 45555555
No 107
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=34.06 E-value=24 Score=36.05 Aligned_cols=14 Identities=7% Similarity=-0.204 Sum_probs=8.3
Q ss_pred CcccCCCCcccCCh
Q 000476 1018 PHKKGIRFYAYKLK 1031 (1470)
Q Consensus 1018 pykC~iCgKsF~~k 1031 (1470)
|..|+.||..|.-.
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 55566666666554
No 108
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.99 E-value=18 Score=41.11 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCCcccCCCCcccCChhhhhhhccc---c-------cCCCc-----cccCCCCCcCC
Q 000476 1016 SRPHKKGIRFYAYKLKSGRLSRPRF---K-------KGLGA-----VSYRIRNRGAA 1057 (1470)
Q Consensus 1016 eKpykC~iCgKsF~~ks~L~~H~r~---H-------~gekp-----y~C~~CgksF~ 1057 (1470)
.+.+.||+|++.|.++.-+....+. . .+..| ..|+.||.+|.
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAF 59 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccc
Confidence 5789999999999999877777643 1 12223 35999999885
No 109
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=30.97 E-value=32 Score=31.43 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=18.2
Q ss_pred cccccccCCc-cCChhhHHHHhhhhccCCCCCCCCCcccCCCCc
Q 000476 984 KFICRFCGLK-FDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFY 1026 (1470)
Q Consensus 984 pfkC~~CgKs-F~sks~LkrH~~r~Htge~l~~eKpykC~iCgK 1026 (1470)
.|.|+.||+. -.+-..-+++ ..+|.|+.||.
T Consensus 25 ~F~CPnCG~~~I~RC~~CRk~------------~~~Y~CP~CGF 56 (59)
T PRK14890 25 KFLCPNCGEVIIYRCEKCRKQ------------SNPYTCPKCGF 56 (59)
T ss_pred EeeCCCCCCeeEeechhHHhc------------CCceECCCCCC
Confidence 4777777766 3333333333 35788888875
No 110
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=30.17 E-value=42 Score=33.82 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=22.2
Q ss_pred cccc----cCCCCCCCChhhhhhhhhhhc
Q 000476 915 LQQC----IPCGSHFGNTEELWLHVQSVH 939 (1470)
Q Consensus 915 pfkC----~~CgK~F~sks~L~~H~k~vH 939 (1470)
-|.| ..|+..+.+...+.+|++..|
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 3889 999999999999999988766
No 111
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=29.44 E-value=45 Score=35.58 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=23.9
Q ss_pred CcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCccc
Q 000476 981 SIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 1028 (1470)
Q Consensus 981 geKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF 1028 (1470)
...-|.|+.|+..|.....+..- +. ...|.|+.||...
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~~----d~------~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQLL----DM------DGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHhc----CC------CCcEECCCCCCEE
Confidence 44568888888888865443321 11 2248888888764
No 112
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=29.29 E-value=36 Score=36.88 Aligned_cols=42 Identities=12% Similarity=-0.010 Sum_probs=28.9
Q ss_pred HHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCccc
Q 000476 972 VENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 1028 (1470)
Q Consensus 972 L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF 1028 (1470)
|..-+.......-|.|+.|+..|+....+. .-|.|+.||...
T Consensus 97 lk~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~---------------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 97 LREKLEFETNNMFFICPNMCVRFTFNEAME---------------LNFTCPRCGAML 138 (158)
T ss_pred HHHHHhhccCCCeEECCCCCcEeeHHHHHH---------------cCCcCCCCCCEe
Confidence 333334445556788999998888877663 158999998663
No 113
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=29.07 E-value=83 Score=32.39 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=40.7
Q ss_pred EEEEEeccc-cccceeeeec----cC-----CCcccc----ccccCCCccEEEEEeccCCcchhhhhhccccccC
Q 000476 157 ALWVKWRGK-WQAGIRCARA----DW-----PLPTLK----AKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINE 217 (1470)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~----~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1470)
-||.|-+|- |.-|+-.-.. .. |++-|+ .+.-.+.+.|+|-||=.+++|.|++---+.+..+
T Consensus 6 lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~~Wv~~~~l~pl~~ 80 (111)
T cd05839 6 LVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTWQWLPGDKLEPLGV 80 (111)
T ss_pred EeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcceecCHHHCccccc
Confidence 379998883 6666554422 11 112222 2334678889999999999999999887776654
No 114
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=29.04 E-value=69 Score=39.80 Aligned_cols=79 Identities=0% Similarity=-0.294 Sum_probs=50.8
Q ss_pred hHHHhhhhhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccccCCCcccc
Q 000476 970 ASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSY 1049 (1470)
Q Consensus 970 s~L~~H~r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H~gekpy~C 1049 (1470)
..+..|...|++..+.-++++.+.+.....+..| ...|.+ +.++.++.+...+.....+..+..+|...+.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (396)
T KOG2461|consen 317 LVLDQSEVPATVSVWTGETIPVRTPAGQLIYTQS-HSMEVA-----EPTDMAPNQIWKIYHTGVLGFLIITTDESECNNM 390 (396)
T ss_pred cccccccccccccccCcCcccccccccccchhhh-hhcccC-----CCCcccccccccceeccccceeeeeccccccccc
Confidence 3455566667776777777777777777777777 666666 5555565555555555666666666766666666
Q ss_pred CCCCC
Q 000476 1050 RIRNR 1054 (1470)
Q Consensus 1050 ~~Cgk 1054 (1470)
..|++
T Consensus 391 ~~~~~ 395 (396)
T KOG2461|consen 391 SFVCK 395 (396)
T ss_pred cccCC
Confidence 65543
No 115
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=28.84 E-value=34 Score=42.22 Aligned_cols=48 Identities=15% Similarity=-0.060 Sum_probs=34.9
Q ss_pred HHHHHHhhccCCccccccccccccccccCChHHHHhhhhccCcccCCCCC
Q 000476 765 LKSILSLRNPVPMEIQFQWALSEASKDAGIGEFLMKLVCCEKERLSKTWG 814 (1470)
Q Consensus 765 ~~sL~~H~r~H~~ek~y~~kC~~CgK~F~s~~~L~k~iHseK~y~C~~Cg 814 (1470)
+..|..-++.-+....| .|+.|.+.|.....++...-....|.|..|+
T Consensus 113 ~krled~~~d~t~~~~Y--~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 113 RKRLEDRLRDDTNVAGY--VCPNCQKKYTSLEALQLLDNETGEFHCENCG 160 (436)
T ss_pred HHHHHHHhhhccccccc--cCCccccchhhhHHHHhhcccCceEEEecCC
Confidence 33444444455556666 9999999999888887555557789999998
No 116
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.70 E-value=28 Score=40.16 Aligned_cols=51 Identities=14% Similarity=0.354 Sum_probs=36.0
Q ss_pred ccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccccChhhhhhhhhhccc
Q 000476 847 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHH 906 (1470)
Q Consensus 847 pykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~sks~L~~H~r~Hhg 906 (1470)
.|.|..||.....+ .+.+|+.+.|. .-|.|-.|++.|.. ..+..|..--+.
T Consensus 3 ~FtCnvCgEsvKKp-~vekH~srCrn-------~~fSCIDC~k~F~~-~sYknH~kCITE 53 (276)
T KOG2186|consen 3 FFTCNVCGESVKKP-QVEKHMSRCRN-------AYFSCIDCGKTFER-VSYKNHTKCITE 53 (276)
T ss_pred EEehhhhhhhcccc-chHHHHHhccC-------CeeEEeeccccccc-chhhhhhhhcch
Confidence 37888888887655 46678555444 34889999999987 667777765444
No 117
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=27.69 E-value=26 Score=28.85 Aligned_cols=12 Identities=8% Similarity=-0.167 Sum_probs=7.3
Q ss_pred CCcccCCCCccc
Q 000476 1017 RPHKKGIRFYAY 1028 (1470)
Q Consensus 1017 KpykC~iCgKsF 1028 (1470)
+..+|+.|+..|
T Consensus 24 ~~vrC~~C~~~f 35 (37)
T PF13719_consen 24 RKVRCPKCGHVF 35 (37)
T ss_pred cEEECCCCCcEe
Confidence 456666666555
No 118
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=39 Score=30.86 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=18.4
Q ss_pred cccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCc
Q 000476 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFY 1026 (1470)
Q Consensus 984 pfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgK 1026 (1470)
.|.|+.||..-..+..- -|.+ ..+|+|+.||.
T Consensus 27 ~F~CPnCGe~~I~Rc~~----CRk~-------g~~Y~Cp~CGF 58 (61)
T COG2888 27 KFPCPNCGEVEIYRCAK----CRKL-------GNPYRCPKCGF 58 (61)
T ss_pred EeeCCCCCceeeehhhh----HHHc-------CCceECCCcCc
Confidence 47788888554433221 1222 34888888874
No 119
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.10 E-value=36 Score=27.59 Aligned_cols=10 Identities=30% Similarity=1.109 Sum_probs=5.6
Q ss_pred ccccccCCcc
Q 000476 985 FICRFCGLKF 994 (1470)
Q Consensus 985 fkC~~CgKsF 994 (1470)
|.|..||..+
T Consensus 3 ~~C~~CG~i~ 12 (34)
T cd00729 3 WVCPVCGYIH 12 (34)
T ss_pred EECCCCCCEe
Confidence 5566666443
No 120
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=27.04 E-value=28 Score=28.38 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=18.2
Q ss_pred ccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcccC
Q 000476 985 FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYK 1029 (1470)
Q Consensus 985 fkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF~ 1029 (1470)
+.|+.|+..|.-...... .. .....|+.|+..|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~------~~-----~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLG------AN-----GGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcC------CC-----CCEEECCCCCCEEE
Confidence 467777777655443211 11 22466777776653
No 121
>PF14353 CpXC: CpXC protein
Probab=26.74 E-value=37 Score=35.16 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=30.7
Q ss_pred cccccCCccCCh----------hhHHHHhhhhccCCCCCCCCCcccCCCCcccCChhhhhhhcccc
Q 000476 986 ICRFCGLKFDLL----------PDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFK 1041 (1470)
Q Consensus 986 kC~~CgKsF~sk----------s~LkrH~~r~Htge~l~~eKpykC~iCgKsF~~ks~L~~H~r~H 1041 (1470)
.|+.|+..|... ..|+. ++-.|+ -..|.|+.||+.|.-...+..|-..|
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e---~il~g~----l~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKE---KILDGS----LFSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHH---HHHcCC----cCEEECCCCCCceecCCCEEEEcCCC
Confidence 588888877532 22322 222332 44688999998888877777776443
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=26.64 E-value=41 Score=44.70 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=24.8
Q ss_pred ccCCCCCccccc-CcEEEEEEeccccccceeeee
Q 000476 142 SSFSEPKWLEHD-ESVALWVKWRGKWQAGIRCAR 174 (1470)
Q Consensus 142 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 174 (1470)
.++.-|.-|+.+ -+..|+|.|+|+=..||=...
T Consensus 16 fdY~~p~~l~~~~~G~rV~VPfg~~~~~GiV~~~ 49 (730)
T COG1198 16 FDYLIPEGLEPDQPGSRVRVPFGGRLVVGIVVEL 49 (730)
T ss_pred ccccCCcccccCCCccEEEEEcCCceEEEEEEEe
Confidence 666667777774 568899999988788876554
No 123
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=26.43 E-value=21 Score=32.94 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=25.6
Q ss_pred eeccCcccccccCCCcccccCCCCCCCCCcCCCCch
Q 000476 587 TVLGTRCKHRALYGSSFCKKHRPRTDTGRILDSPDN 622 (1470)
Q Consensus 587 ~~~g~~ck~~~~~~~~~ck~~~~~~~~~~~~~~~~~ 622 (1470)
+..|+.|+.+++||+.||=+|-..- .++.||....
T Consensus 3 ~~~~~~C~~~~lp~~~yC~~HIl~D-~~Q~Lf~~C~ 37 (65)
T PF13891_consen 3 TYSGRGCSQPALPGSKYCIRHILED-PNQPLFKQCS 37 (65)
T ss_pred CCCCCCcCcccCchhhHHHHHhccC-CCCCCcccCc
Confidence 4578999999999999999987432 2255555543
No 124
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.94 E-value=53 Score=35.03 Aligned_cols=41 Identities=12% Similarity=0.358 Sum_probs=25.3
Q ss_pred ccCCCCccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccc
Q 000476 841 RSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSF 891 (1470)
Q Consensus 841 ~H~gekpykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF 891 (1470)
.-....-|.|+.|+..|.....+..- +. . ..|.|+.||...
T Consensus 93 ~e~~~~~Y~Cp~C~~~y~~~ea~~~~----d~-~-----~~f~Cp~Cg~~l 133 (147)
T smart00531 93 DETNNAYYKCPNCQSKYTFLEANQLL----DM-D-----GTFTCPRCGEEL 133 (147)
T ss_pred cccCCcEEECcCCCCEeeHHHHHHhc----CC-C-----CcEECCCCCCEE
Confidence 33445568888888888865544321 11 2 348888888764
No 125
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=25.59 E-value=32 Score=33.66 Aligned_cols=13 Identities=8% Similarity=-0.401 Sum_probs=7.5
Q ss_pred CcccCCCCcccCC
Q 000476 1018 PHKKGIRFYAYKL 1030 (1470)
Q Consensus 1018 pykC~iCgKsF~~ 1030 (1470)
-+.|..|++.|.-
T Consensus 53 IW~C~kCg~~fAG 65 (89)
T COG1997 53 IWKCRKCGAKFAG 65 (89)
T ss_pred eEEcCCCCCeecc
Confidence 5566666665543
No 126
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=25.57 E-value=42 Score=28.18 Aligned_cols=27 Identities=30% Similarity=0.659 Sum_probs=14.0
Q ss_pred cccccccccCCccCCh----hhHHHHhhhhc
Q 000476 982 IRKFICRFCGLKFDLL----PDLGRHHQAAH 1008 (1470)
Q Consensus 982 eKpfkC~~CgKsF~sk----s~LkrH~~r~H 1008 (1470)
....+|..|++.+... +.|.+|+++.|
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 3456677777776653 67777744544
No 127
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=24.32 E-value=49 Score=35.84 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=28.8
Q ss_pred hHHHhcccCCCCccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCccc
Q 000476 835 PLAIAGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSF 891 (1470)
Q Consensus 835 L~~H~r~H~gekpykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF 891 (1470)
|+.-+.......-|.|+.|+..|+....+. ..|.|+.||...
T Consensus 97 lk~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~---------------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 97 LREKLEFETNNMFFICPNMCVRFTFNEAME---------------LNFTCPRCGAML 138 (158)
T ss_pred HHHHHhhccCCCeEECCCCCcEeeHHHHHH---------------cCCcCCCCCCEe
Confidence 333344455566788999998888777664 238899998764
No 128
>PF11722 zf-TRM13_CCCH: CCCH zinc finger in TRM13 protein; InterPro: IPR021721 This domain is found at the N terminus of TRM13 methyltransferase proteins. It is presumed to be a zinc binding domain. ; GO: 0008168 methyltransferase activity
Probab=24.05 E-value=43 Score=26.76 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.3
Q ss_pred ccCcccccccCCCcccccCCC
Q 000476 589 LGTRCKHRALYGSSFCKKHRP 609 (1470)
Q Consensus 589 ~g~~ck~~~~~~~~~ck~~~~ 609 (1470)
-.|.|+-...+|+.||..|.|
T Consensus 11 K~R~C~m~~~~g~~fC~~H~~ 31 (31)
T PF11722_consen 11 KKRFCKMTRKPGSRFCGEHMP 31 (31)
T ss_pred cccccCCeecCcCCccccCCC
Confidence 357899999999999999975
No 129
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.74 E-value=33 Score=28.12 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=17.4
Q ss_pred ccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCccc
Q 000476 985 FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 1028 (1470)
Q Consensus 985 fkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF 1028 (1470)
..|+.|+..|.-...... .. .+..+|+.|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~ip------~~-----g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIP------PK-----GRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCC------CC-----CcEEECCCCCCEe
Confidence 356666666655443211 11 3456677666655
No 130
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=23.51 E-value=53 Score=36.34 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=20.8
Q ss_pred CcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCccc
Q 000476 981 SIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 1028 (1470)
Q Consensus 981 geKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKsF 1028 (1470)
...-|.|+.|++.|+....+. .-|.|+.||...
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~~---------------~~F~Cp~Cg~~L 146 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAME---------------YGFRCPQCGEML 146 (178)
T ss_pred CCCEEECCCCCcEEeHHHHhh---------------cCCcCCCCCCCC
Confidence 335577777777777665442 247777777553
No 131
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=22.57 E-value=1.1e+02 Score=29.79 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=35.5
Q ss_pred EEEEEeccc-cccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCC
Q 000476 157 ALWVKWRGK-WQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEF 218 (1470)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1470)
-+|.|=+|- |=-|+=|...+. +-..++|.|.||. |..|.||..-.+.++.++
T Consensus 8 lVwaK~kGyp~WPa~I~~~~~~---------~~~~~~~~V~FfG-t~~~a~v~~~~l~pf~~~ 60 (83)
T cd05834 8 LVFAKVKGYPAWPARVDEPEDW---------KPPGKKYPVYFFG-THETAFLKPEDLFPYTEN 60 (83)
T ss_pred EEEEecCCCCCCCEEEeccccc---------CCCCCEEEEEEeC-CCCEeEECHHHceecccc
Confidence 368887773 333444444332 2235789999999 789999998888888775
No 132
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=22.57 E-value=33 Score=37.10 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=0.0
Q ss_pred ccccccCccccChhhhhhhhhhcccccchhhcccccccCCCCCCCC
Q 000476 882 YACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGN 927 (1470)
Q Consensus 882 ykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC~~CgK~F~s 927 (1470)
++||+||..+.....-.---....-.+ .++|+.||++|.+
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~------~~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRR------RRECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceee------eeeccccCCcceE
No 133
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.38 E-value=54 Score=34.34 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=8.9
Q ss_pred CCcccCCCCcccCCh
Q 000476 1017 RPHKKGIRFYAYKLK 1031 (1470)
Q Consensus 1017 KpykC~iCgKsF~~k 1031 (1470)
.|..|+.||..|...
T Consensus 25 ~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 25 RPAVSPYTGEQFPPE 39 (129)
T ss_pred CCccCCCcCCccCcc
Confidence 356666666666544
No 134
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=21.19 E-value=56 Score=35.85 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=0.0
Q ss_pred ccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCC
Q 000476 985 FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRF 1025 (1470)
Q Consensus 985 fkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCg 1025 (1470)
|.|++||..+.. +.|-+||+||
T Consensus 135 ~vC~vCGy~~~g-------------------e~P~~CPiCg 156 (166)
T COG1592 135 WVCPVCGYTHEG-------------------EAPEVCPICG 156 (166)
T ss_pred EEcCCCCCcccC-------------------CCCCcCCCCC
No 135
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=21.07 E-value=61 Score=35.91 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=24.6
Q ss_pred cCCCCccccCcCCccccChhHHhhhhhhcccchhhhccCcccccccCcccc
Q 000476 842 SEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFT 892 (1470)
Q Consensus 842 H~gekpykC~~CgKsF~s~s~L~~H~~~~Ht~e~~~~~KpykC~~CgKsF~ 892 (1470)
-....-|.|+.|+..|+....+. ..|.|+.||....
T Consensus 112 e~~~~~Y~Cp~C~~rytf~eA~~---------------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 112 EENNMFFFCPNCHIRFTFDEAME---------------YGFRCPQCGEMLE 147 (178)
T ss_pred ccCCCEEECCCCCcEEeHHHHhh---------------cCCcCCCCCCCCe
Confidence 34445688888888887766542 2488888887643
No 136
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.65 E-value=68 Score=39.78 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=26.9
Q ss_pred hhcCCcccccccccCCccCChhhHHHHhhhhccCCCCCCCCCcccCCCCcc
Q 000476 977 ENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA 1027 (1470)
Q Consensus 977 r~HtgeKpfkC~~CgKsF~sks~LkrH~~r~Htge~l~~eKpykC~iCgKs 1027 (1470)
+.-+...-|.|+.|.++|+....|+- .-.. .-.|.|..|+--
T Consensus 121 ~d~t~~~~Y~Cp~C~kkyt~Lea~~L----~~~~-----~~~F~C~~C~ge 162 (436)
T KOG2593|consen 121 RDDTNVAGYVCPNCQKKYTSLEALQL----LDNE-----TGEFHCENCGGE 162 (436)
T ss_pred hhccccccccCCccccchhhhHHHHh----hccc-----CceEEEecCCCc
Confidence 33444566888888888887776643 2221 237888888743
No 137
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=20.20 E-value=61 Score=38.30 Aligned_cols=82 Identities=21% Similarity=0.401 Sum_probs=47.5
Q ss_pred ccccCcCCccccChhHHhhhhhhcccch-hhhc-------cCcccccccCccccChhhhhhhhhhcccccchhhcccccc
Q 000476 847 THKCKICSQVFLHDQELGVHWMDNHKKE-AQWL-------FRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQC 918 (1470)
Q Consensus 847 pykC~~CgKsF~s~s~L~~H~~~~Ht~e-~~~~-------~KpykC~~CgKsF~sks~L~~H~r~Hhgek~~~~~kpfkC 918 (1470)
|..|+.|.-..-...+|.+- ..|.-. .+|. .+.-.|-.|.-.|.....-.--..+ ....|+|
T Consensus 322 Pi~CP~Csl~LilsthLarS--yhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~--------ss~rY~C 391 (421)
T COG5151 322 PISCPICSLQLILSTHLARS--YHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDEST--------SSGRYQC 391 (421)
T ss_pred CccCcchhHHHHHHHHHHHH--HHhhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccc--------cccceec
Confidence 56788887766655555542 112100 0011 1234488888888765432211111 1237999
Q ss_pred cCCCCCCCChhhhhhhhhhhc
Q 000476 919 IPCGSHFGNTEELWLHVQSVH 939 (1470)
Q Consensus 919 ~~CgK~F~sks~L~~H~k~vH 939 (1470)
+.|...|-..-....|. ..|
T Consensus 392 e~CK~~FC~dCdvfiHe-~Lh 411 (421)
T COG5151 392 ELCKSTFCSDCDVFIHE-TLH 411 (421)
T ss_pred hhhhhhhhhhhHHHHHH-HHh
Confidence 99999999988888884 345
Done!