BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000481
(1467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 225/931 (24%), Positives = 416/931 (44%), Gaps = 112/931 (12%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+ ++ +F++ +P LRG+NL + Q +A+ GS G GKS+++ +L + G +
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL--- 698
+ G ++A VSQ + + +I +NI GK + ++ + AC +
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK--EGITREEMVAACKMANA 533
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
+K I +G T +G RG LSGGQKQRI +ARA+ + I L D+ SA+DA + +
Sbjct: 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG-I 592
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
+ + A + +T I++ H++ + D I+ + GQ+ + G+++ L+ + LV A
Sbjct: 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA 652
Query: 819 HRDAITGLGPLDNAGQGGAEK---------VEKGRTARPEEPNGIYPRKESSEGEISVKG 869
T +D+A +G + +G + + E + I R SS ++
Sbjct: 653 Q----TFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSS----TIGS 704
Query: 870 LTQ--LTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVL------AQSGFVGLQAAATY 921
+T + +++E IG L + +L A S F+G+ A
Sbjct: 705 ITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIG 764
Query: 922 WLAYAIQIPKITSGILIGVYAG------------------VSTASAVFVYFRSFFAAHLG 963
Y TS + V+AG ++ A + + +FF +G
Sbjct: 765 GFIYPTYSVFFTS--FMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFF---MG 819
Query: 964 LKASKAFFSGFTNSIFK----APMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVA 1017
+ AS++ N +F+ + FFDS G+I TRL++D+ L I F V
Sbjct: 820 I-ASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVI 878
Query: 1018 ASGTELLAIIGIMTFVTWQV--LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMN 1075
+ ++A IG+ F WQ+ L++AI +VA R T + + + + A
Sbjct: 879 TTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNV--KSASEFADSGK 936
Query: 1076 YTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLIL--------RVEA 1127
E + V T++A D F++N+ + +DI H + E I V
Sbjct: 937 IAIEAIENVRTVQALAREDTFYENFCEKLDIP-----HKEAIKEAFIQGLSYGCASSVLY 991
Query: 1128 LQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTL-TGTQVFLSRWYCYLANYI----I 1182
L N ++ + P V L + YA T+ T T F + ++ A I
Sbjct: 992 LLNTCAYRMGLALIITDPPTMQPMRV-LRVMYAITISTSTLGFATSYFPEYAKATFAGGI 1050
Query: 1183 SVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAP--LVLKGITCTF 1240
+++ I + ++ +K+ G++ + ++ Y P P +LKG++ +
Sbjct: 1051 IFGMLRKISKI--DSLSLAGEKK-----KLYGKVIFKNVRFAY-PERPEIEILKGLSFSV 1102
Query: 1241 SEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300
+++ L R + GG I IDG +I ++ + R +++I+ QEP
Sbjct: 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162
Query: 1301 TLFRGSVRTN----LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356
TLF S+ N LDP + + ++ +A + I+ LP ++ V D G S G
Sbjct: 1163 TLFDCSIAENIIYGLDPSSV-TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGG 1221
Query: 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID 1416
Q+Q + R L++ +IL+LDEA +++D+ ++ ++Q + + T I +AHR+ TV++
Sbjct: 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN 1281
Query: 1417 SDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+D + V+S G ++E ++LM ++ KL
Sbjct: 1282 ADCIAVVSNGTIIEKGTHTQLMSEKGAYYKL 1312
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 6/240 (2%)
Query: 1213 KGRIELRQLKIRY--RPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPA 1270
KG I + + Y RP+ P +L+G+ + +IS L R +
Sbjct: 413 KGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL 471
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--YSDDEIWKALEK 1328
G I IDGVD+ + L+ LR ++++ QEP LF ++ N+ LG + +E+ A +
Sbjct: 472 KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS-LGKEGITREEMVAACKM 530
Query: 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD 1388
+ I +LPN ++ V D G S GQ+Q + R L++ +IL+LDEA +++D+ ++
Sbjct: 531 ANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590
Query: 1389 AILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
I+Q+ + + T I +AHR+ T+ ++D+++ G+++E + LM + LV
Sbjct: 591 GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLV 650
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 220 bits (561), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 153/231 (66%), Gaps = 9/231 (3%)
Query: 594 SVKIQEGNFSW---DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
S+ ++ F+W DP PTL G+ I +AV G VG GKSSLL A+L E+ K+
Sbjct: 3 SITVRNATFTWARSDP----PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
G V + GS+AYV Q +WIQ+ S+R+NIL+G +++ Y I+ACAL D+ GD
Sbjct: 59 EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALE 768
TEIG++G+NLSGGQKQR+ LARAVY++ADIYLFDDP SAVDAH +F + L+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
KT ILVTH + +L +VD I+V+ GG+I++ G+YQELL AF + + +
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 18/242 (7%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I +R + + P L GIT + E L+SAL ++ G +
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKA-LEKCQLKTT 1334
I G ++ +PQ+ + S+R N+ G ++ +++ ++ C L
Sbjct: 64 IKG-------------SVAYVPQQAWIQNDSLRENI-LFGCQLEEPYYRSVIQACALLPD 109
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQR 1393
+ LP+ + + ++G N S GQ+Q L R + I + D+ +++D+ I +
Sbjct: 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 1394 II--RQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+I + N T I V H + + D+++V+S GK+ E +L+ + +F++ + Y
Sbjct: 170 VIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
Query: 1452 WS 1453
S
Sbjct: 230 AS 231
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI++G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 262 TFDQFTEERRSSI 274
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLK 1332
+LI G S G+ ++S Q + G+++ N+ G+ D+ +K++ K CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQ 140
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-IL 1391
I+ + ++ + + G S GQR L R + K + +LD +D T+ +
Sbjct: 141 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+ + + +N T I V ++ + +D +++L G Y S+L FS + Y
Sbjct: 201 ESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHXSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI++G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R I
Sbjct: 262 TFDQFTEERRXXI 274
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLK 1332
+LI G S G+ ++S Q + G+++ N+ G+ D+ +K++ K CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQ 140
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-IL 1391
I+ + ++ + + G S GQR L R + K + +LD +D T+ +
Sbjct: 141 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+ + + +N T I V ++ + +D +++L G Y S+L FS + Y
Sbjct: 201 ESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 145/261 (55%), Gaps = 17/261 (6%)
Query: 573 LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
L + N++ R+ S D S+ NFS L P L+ +N I+ Q +AV GS
Sbjct: 21 LFEKAKQNNNNRKTS--NGDDSLSFS--NFSL---LGTPVLKDINFKIERGQLLAVAGST 73
Query: 633 GAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692
GAGK+SLL I+GE+ G + G I++ SQ SWI G+I++NI+ G D+ RY
Sbjct: 74 GAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSV 133
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
IKAC L++DI+ F D +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D
Sbjct: 134 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL------- 805
T +F CV + KT ILVT ++E L + D+IL+L G G + EL
Sbjct: 194 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 253
Query: 806 ---LLAGTAFEQLVNAHRDAI 823
L+ +F+Q R++I
Sbjct: 254 SSKLMGCDSFDQFSAERRNSI 274
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
+EP+ G I G ++S Q + G+++ N+ Y + +
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVI 134
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ CQL+ IS K + + + G S GQR L R + K + +LD +D
Sbjct: 135 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 1387 TDA-ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF- 1444
T+ I + + + +N T I V ++ + +D +++L G Y S+L F
Sbjct: 195 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 254
Query: 1445 SKLVA----EYWSSCRRNS 1459
SKL+ + +S+ RRNS
Sbjct: 255 SKLMGCDSFDQFSAERRNS 273
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI+ G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 262 TFDQFTEERRSSI 274
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLK 1332
+LI G S G+ ++S Q + G+++ N+ G+ D+ +K++ K CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENI-IRGVSYDEYRYKSVVKACQLQ 140
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-IL 1391
I+ + ++ + + G S GQR L R + K + +LD +D T+ +
Sbjct: 141 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+ + + +N T I V ++ + +D +++L G Y S+L FS + Y
Sbjct: 201 ESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 181 bits (459), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI+ G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 262 TFDQFTEERRSSI 274
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLK 1332
+LI G S G+ ++S Q + G+++ N+ G+ D+ +K++ K CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIS-GVSYDEYRYKSVVKACQLQ 140
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-IL 1391
I+ + ++ + + G S GQR L R + K + +LD +D T+ +
Sbjct: 141 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+ + + +N T I V ++ + +D +++L G Y S+L FS + Y
Sbjct: 201 ESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 260
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
W+ E P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++
Sbjct: 28 WE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 86
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ SWI G+I++NI++G D+ RY IKAC L++DI+ F D +G+ G+ LSGG
Sbjct: 87 SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 146
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
Q+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L
Sbjct: 147 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 206
Query: 784 EVDRILVLEGGQITQSGNYQEL 805
+ D+IL+L G G + EL
Sbjct: 207 KADKILILHEGSSYFYGTFSEL 228
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLKTTISSLPNKLDSSVSDEG 1350
++S Q + G+++ N+ G+ D+ ++++ K CQL+ IS K + + + G
Sbjct: 82 RISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRIIRQEFSNCTVITVAH 1409
S GQR L R + K + +LD +D T+ I + + + +N T I V
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFS 1445
++ + +D +++L G Y S+L FS
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 236
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 179 bits (455), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
W+ E P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++
Sbjct: 16 WE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 74
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ SWI G+I++NI++G D+ RY IKAC L++DI+ F D +G+ G+ LSGG
Sbjct: 75 SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 134
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
Q+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L
Sbjct: 135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194
Query: 784 EVDRILVLEGGQITQSGNYQEL 805
+ D+IL+L G G + EL
Sbjct: 195 KADKILILHEGSSYFYGTFSEL 216
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLKTTISSLPNKLDSSVSDEG 1350
++S Q + G+++ N+ G+ D+ ++++ K CQL+ IS K + + + G
Sbjct: 70 RISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRIIRQEFSNCTVITVAH 1409
S GQR L R + K + +LD +D T+ I + + + +N T I V
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFS 1445
++ + +D +++L G Y S+L FS
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 145/261 (55%), Gaps = 18/261 (6%)
Query: 573 LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
L + N++ R+ S D S+ NFS L P L+ +N I+ Q +AV GS
Sbjct: 21 LFEKAKQNNNNRKTS--NGDDSLSFS--NFSL---LGTPVLKDINFKIERGQLLAVAGST 73
Query: 633 GAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692
GAGK+SLL I+GE+ G + G I++ SQ SWI G+I++NI+ G D+ RY
Sbjct: 74 GAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSV 132
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
IKAC L++DI+ F D +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL------- 805
T +F CV + KT ILVT ++E L + D+IL+L G G + EL
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 806 ---LLAGTAFEQLVNAHRDAI 823
L+ +F+Q R++I
Sbjct: 253 SSKLMGCDSFDQFSAERRNSI 273
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 22/200 (11%)
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
+EP+ G I G ++S Q + G+++ N+ +G+ D+ ++++
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 1327 EK-CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
K CQL+ IS K + + + G S GQR L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 1386 ATDA-ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
T+ I + + + +N T I V ++ + +D +++L G Y S+L F
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 1445 -SKLVA----EYWSSCRRNS 1459
SKL+ + +S+ RRNS
Sbjct: 253 SSKLMGCDSFDQFSAERRNS 272
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 134/233 (57%), Gaps = 14/233 (6%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
NFS L P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I
Sbjct: 45 NFSL---LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
++ SQ SWI G+I++NI+ G D+ RY IKAC L++DI+ F D +G+ G+ L
Sbjct: 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGGQ+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 781 FLSEVDRILVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L + D+IL+L G G + EL L+ +F+Q R++I
Sbjct: 221 HLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSI 273
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 22/200 (11%)
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
+EP+ G I G ++S Q + G+++ N+ +G+ D+ ++++
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 1327 EK-CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
K CQL+ IS K + + + G S GQR L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 1386 ATDA-ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
T+ I + + + +N T I V ++ + +D +++L G Y S+L F
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 1445 -SKLVA----EYWSSCRRNS 1459
SKL+ + +S+ RRNS
Sbjct: 253 SSKLMGCDSFDQFSAERRNS 272
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 13/253 (5%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI+ G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQLQQ 140
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 141 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 200
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 260
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 261 TFDQFTEERRSSI 273
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 4/180 (2%)
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLK 1332
+LI G S G+ ++S Q + G+++ N+ +G+ D+ +K++ K CQL+
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENI--IGVSYDEYRYKSVVKACQLQ 139
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-IL 1391
I+ + ++ + + G S GQR L R + K + +LD +D T+ +
Sbjct: 140 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 199
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+ + + +N T I V ++ + +D +++L G Y S+L FS + Y
Sbjct: 200 ESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 259
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 130/225 (57%), Gaps = 10/225 (4%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++ SQ SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
I G+I++NI++G D+ RY IKAC L++DI+ F D +G+ G+ LS GQ+ +I
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 169
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L + D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 789 LVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L+L G G + EL L+ +F+Q R++I
Sbjct: 230 LILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSI 274
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
+EP+ G I G ++S Q + G+++ N+ G+ D+ ++++
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSV 133
Query: 1327 EK-CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
K CQL+ IS K + + + G S GQ+ L R + K + +LD +D
Sbjct: 134 IKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 193
Query: 1386 ATDA-ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
T+ I + + + +N T I V ++ + +D +++L G Y S+L F
Sbjct: 194 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 253
Query: 1445 -SKLVA----EYWSSCRRNS 1459
SKL+ + +S+ RRNS
Sbjct: 254 SSKLMGCDSFDQFSAERRNS 273
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
W+ E P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++
Sbjct: 16 WE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 74
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ SWI G+I++NI+ G D+ RY IKAC L++DI+ F D +G+ G+ LSGG
Sbjct: 75 SQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 133
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
Q+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L
Sbjct: 134 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 193
Query: 784 EVDRILVLEGGQITQSGNYQEL 805
+ D+IL+L G G + EL
Sbjct: 194 KADKILILHEGSSYFYGTFSEL 215
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLKTTISSLPNKLDSSVSDEG 1350
++S Q + G+++ N+ +G+ D+ ++++ K CQL+ IS K + + + G
Sbjct: 70 RISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRIIRQEFSNCTVITVAH 1409
S GQR L R + K + +LD +D T+ I + + + +N T I V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFS 1445
++ + +D +++L G Y S+L FS
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 223
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 129/225 (57%), Gaps = 11/225 (4%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++ SQ SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
I G+I++NI+ G D+ RY IKAC L++DI+ F D +G+ G+ LS GQ+ +I
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 168
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L + D+I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 789 LVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L+L G G + EL L+ +F+Q R++I
Sbjct: 229 LILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSI 273
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 22/200 (11%)
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
+EP+ G I G ++S Q + G+++ N+ +G+ D+ ++++
Sbjct: 88 LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 1327 EK-CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
K CQL+ IS K + + + G S GQ+ L R + K + +LD +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 192
Query: 1386 ATDA-ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
T+ I + + + +N T I V ++ + +D +++L G Y S+L F
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 252
Query: 1445 -SKLVA----EYWSSCRRNS 1459
SKL+ + +S+ RRNS
Sbjct: 253 SSKLMGCDSFDQFSAERRNS 272
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/526 (24%), Positives = 232/526 (44%), Gaps = 43/526 (8%)
Query: 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSI 1004
+ A+A+ VY + + + FS SI + + FFD T G ++ RLSSD ++
Sbjct: 76 AAANAIRVYLMQTSGQRIVNRLRTSLFS----SILRQEVAFFDKTRTGELINRLSSDTAL 131
Query: 1005 LDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIR 1064
L + ++ +G + I +M FV+ + + + V + Y R+L +
Sbjct: 132 LGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTK 191
Query: 1065 INGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASL----------FFHT 1114
+ + A E V T+RAF + Y VD L FF
Sbjct: 192 VTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 251
Query: 1115 NGVMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174
G+ LI+ +L+ ++ G + L YAF + + LS +Y
Sbjct: 252 TGLSGNLIV---------LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFY 302
Query: 1175 CYLANYIISVERIKQFMHIPPEPP----AIVEDKRPPSSWPFKGRIELRQLKIRY--RPN 1228
L + + R+ + + P+ P I+ +K F+G +E + + Y RP
Sbjct: 303 SELMKGLGAGGRLWELLEREPKLPFNEGVILNEK------SFQGALEFKNVHFAYPARPE 356
Query: 1229 APLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKD 1288
P + + + + ++S L RL +PA G+I +DG DI +
Sbjct: 357 VP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVW 415
Query: 1289 LRVKLSIIPQEPTLFRGSVRTNL-----DPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
LR K+ + QEP LF S+ N+ DP + + +EI + E I + P +
Sbjct: 416 LRSKIGTVSQEPILFSCSIAENIAYGADDPSSV-TAEEIQRVAEVANAVAFIRNFPQGFN 474
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCT 1403
+ V ++G S GQ+Q + R LLK +IL+LDEA +++D+ + ++Q + + T
Sbjct: 475 TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRT 534
Query: 1404 VITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKLV 1448
V+ +AHR+ T+ +++MV VL GK+ EY + +L+ + N + KL+
Sbjct: 535 VLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 18/223 (8%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F++ +P + +L I A+ G G+GKS++L +L SGT++L G
Sbjct: 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD----IN 703
I VSQ + S SI +NI YG + + I+ A + I
Sbjct: 408 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 467
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
NF G T +G++G+ LSGGQKQRI +ARA+ + I L D+ SA+DA L E +
Sbjct: 468 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEAL 526
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
++ +TV+++ H++ + + + VL+ G+IT+ G ++ELL
Sbjct: 527 DRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 130/526 (24%), Positives = 231/526 (43%), Gaps = 43/526 (8%)
Query: 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSI 1004
+ A+A+ VY + + + FS SI + + FFD T G ++ RLSSD ++
Sbjct: 107 AAANAIRVYLMQTSGQRIVNRLRTSLFS----SILRQEVAFFDKTRTGELINRLSSDTAL 162
Query: 1005 LDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIR 1064
L + ++ +G + I +M FV+ + + + V + Y R+L +
Sbjct: 163 LGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTK 222
Query: 1065 INGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASL----------FFHT 1114
+ + A E V T+RAF + Y VD L FF
Sbjct: 223 VTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 282
Query: 1115 NGVMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174
G+ LI+ +L+ ++ G + L YAF + + LS +Y
Sbjct: 283 TGLSGNLIV---------LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFY 333
Query: 1175 CYLANYIISVERIKQFMHIPPEPP----AIVEDKRPPSSWPFKGRIELRQLKIRY--RPN 1228
L + + R+ + + P+ P I+ +K F+G +E + + Y RP
Sbjct: 334 SELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS------FQGALEFKNVHFAYPARPE 387
Query: 1229 APLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKD 1288
P + + + + ++S L RL +PA G+I +DG DI +
Sbjct: 388 VP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVW 446
Query: 1289 LRVKLSIIPQEPTLFRGSVRTNL-----DPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
LR K+ + QEP LF S+ N+ DP + + +EI + E I + P +
Sbjct: 447 LRSKIGTVSQEPILFSCSIAENIAYGADDPSSV-TAEEIQRVAEVANAVAFIRNFPQGFN 505
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCT 1403
+ V ++G S GQ+Q + R LLK +IL+LDEA +++D+ + ++Q + + T
Sbjct: 506 TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRT 565
Query: 1404 VITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKLV 1448
V+ +AH + T+ +++MV VL GK+ EY + +L+ + N + KL+
Sbjct: 566 VLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 18/223 (8%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F++ +P + +L I A+ G G+GKS++L +L SGT++L G
Sbjct: 379 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 438
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD----IN 703
I VSQ + S SI +NI YG + + I+ A + I
Sbjct: 439 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 498
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
NF G T +G++G+ LSGGQKQRI +ARA+ + I L D+ SA+DA L E +
Sbjct: 499 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEAL 557
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
++ +TV+++ H + + + + VL+ G+IT+ G ++ELL
Sbjct: 558 DRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%)
Query: 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEP 1269
WP G++ ++ L +Y +L+ I+ + S L+SA RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKC 1329
G I IDGV S+ L+ R +IPQ+ +F G+ R NLDP +SD EIWK ++
Sbjct: 73 TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
L++ I P KLD + D G S G +QL CL R +L + +IL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1390 ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432
I++R ++Q F++CTVI R+ +++ D +V+ K+ +YD
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYD 235
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNL---YGS 659
L ++ I Q++ + G G+GKS+LL A L GEI +I G ++ L +
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI-QIDGVSWDSITLEQWRKA 95
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+ Q +I SG+ R N+ K L I F + G
Sbjct: 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV 155
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LS G KQ + LAR+V + A I L D+P + +D T + + A TVIL ++
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCEARI 214
Query: 780 EFLSEVDRILVLEGGQITQSGNYQEL 805
E + E D+ LV+E ++ Q + EL
Sbjct: 215 EAMLECDQFLVIEENKVRQYDSILEL 240
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 126/496 (25%), Positives = 227/496 (45%), Gaps = 49/496 (9%)
Query: 980 KAPMLFFDSTPVGRILTRLSSDL---------SILDFDIPFS-IVFVAASGTELLAIIGI 1029
+ P+ FFD TP G I++R+ +D+ SI+ F FS IV +A + + + I
Sbjct: 122 RVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQF---FSGIVTLAGAVIMMFRVNVI 178
Query: 1030 MTFVTWQV--LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTI 1087
++ VT + L V I +V+ + ++Y+ R L ++NG + E G+ I
Sbjct: 179 LSLVTLSIVPLTVLITQIVSSQ-TRKYFYENQRVLGQLNGIIE--------EDISGLTVI 229
Query: 1088 RAFNMVDRFFQNY------LKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXV 1141
+ F ++ + + L+ V A +F +GV+ L+ V L
Sbjct: 230 KLFTREEKEMEKFDRVNESLRKVGTKAQIF---SGVLPPLMNMVNNLGFALISGFGGWLA 286
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP--PA 1199
L + + G + + Y+ T LS + + + S ERI + + + E P
Sbjct: 287 L--KDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD 344
Query: 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXL 1259
VE + +G IE + + Y P VLK IT +
Sbjct: 345 AVELRE------VRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTI 397
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGL 1316
++ L R + G IL+DG+DI + LR + I+ Q+ LF +V+ NL +P
Sbjct: 398 VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA- 456
Query: 1317 YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
+D+EI +A + I LP ++ ++D GE+ S GQRQL + R L +IL+L
Sbjct: 457 -TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515
Query: 1377 DEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSK 1436
DEA +++D+ T+ +Q + + T I +AHR+ T+ ++D+++VL G+++E + +
Sbjct: 516 DEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE 575
Query: 1437 LMETNSSFSKLVAEYW 1452
L++ + +L +
Sbjct: 576 LIQKRGFYYELFTSQY 591
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 169/373 (45%), Gaps = 41/373 (10%)
Query: 460 SEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIF 519
E ++ + +IKL + EEK + E K ++AQ + + P +++ V
Sbjct: 220 EEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQ-------IFSGVLPPLMNMVNN 272
Query: 520 LGCALTG--------SAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINA 571
LG AL + TI T + R P+ + +++ S +RI
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332
Query: 572 FLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGS 631
+LD E DD + L++ ++ + FS+D + P L+ + IK QK+A+ G
Sbjct: 333 -ILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGP 389
Query: 632 VGAGKSSLLYAILG--------------EIPKISGTVNLYGSIAYVSQTSWIQSGSIRDN 677
G+GK++++ ++ +I KI + +L SI V Q + + S ++++N
Sbjct: 390 TGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS-SLRSSIGIVLQDTILFSTTVKEN 448
Query: 678 ILYGKPMDKARYDKAIKACAL----DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
+ YG P D+ IK A D I + G T + G +LS GQ+Q + + RA
Sbjct: 449 LKYGNP---GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793
+ I + D+ S VD T ++ + +E KT I++ H++ + D I+VL
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRD 564
Query: 794 GQITQSGNYQELL 806
G+I + G + EL+
Sbjct: 565 GEIVEMGKHDELI 577
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 130 bits (326), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 1/253 (0%)
Query: 1188 KQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXX 1247
K+ + + E PAI E + +G + ++ RY N VL G+ +
Sbjct: 314 KRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVA 373
Query: 1248 XXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307
L++ + RL++P G + +D +D+ ++ LKDLR +S +PQE LF G++
Sbjct: 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433
Query: 1308 RTNLD-PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366
+ NL +DDEI +A + Q+ I SLP DS V G N+S GQ+Q + R
Sbjct: 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493
Query: 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYG 1426
L+K+ ++L+LD+ +S+D T+ + +++ CT + ++PT + +D ++VL G
Sbjct: 494 LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEG 553
Query: 1427 KLLEYDEPSKLME 1439
K+ + +L+E
Sbjct: 554 KVAGFGTHKELLE 566
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 145/308 (47%), Gaps = 22/308 (7%)
Query: 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575
+V++ G L + + +I L + + MI L+ +++ S R+ L +
Sbjct: 263 AVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNE 322
Query: 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAG 635
+ ++L + SV + F + E P L GVN +K +AV G G+G
Sbjct: 323 KPAIEEADNALALPNVEGSVSFENVEFRYF-ENTDPVLSGVNFSVKPGSLVAVLGETGSG 381
Query: 636 KSSLLYAILGEIPKISGTV-------------NLYGSIAYVSQTSWIQSGSIRDNILYGK 682
KS+L+ I I G V +L G I+ V Q + + SG+I++N+ +G+
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441
Query: 683 PMDKARYDKAIKACALDKDINNF----DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738
+ A D+ ++A + + I++F G + + + G N SGGQKQR+ +ARA+
Sbjct: 442 --EDATDDEIVEAAKIAQ-IHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498
Query: 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
+ + DD S+VD T + + + + T ++T ++ D+ILVL G++
Sbjct: 499 KVLILDDCTSSVDPITEKRIL-DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557
Query: 799 SGNYQELL 806
G ++ELL
Sbjct: 558 FGTHKELL 565
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 142/277 (51%), Gaps = 8/277 (2%)
Query: 1178 ANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKG 1235
A +S I + + PE + P+ +G ++ + Y RP+ P VL+G
Sbjct: 995 AKATVSASHIIRIIEKTPEIDSYSTQGLKPNM--LEGNVQFSGVVFNYPTRPSIP-VLQG 1051
Query: 1236 ITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295
++ + ++ L R +P GS+ +DG +I + ++ LR +L I
Sbjct: 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111
Query: 1296 IPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
+ QEP LF S+ N+ D + S +EI +A ++ + I SLP+K ++ V D+G
Sbjct: 1112 VSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVP 1412
S GQ+Q + R L+++ IL+LDEA +++D+ ++ ++Q + + T I +AHR+
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 1413 TVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
T+ ++D+++V+ GK+ E+ +L+ + +V+
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVS 1268
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 119/238 (50%), Gaps = 2/238 (0%)
Query: 1213 KGRIELRQLKIRYRPNAPL-VLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAG 1271
+G +E + + Y + +LKG+ + + RL +P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-PLGLYSDDEIWKALEKCQ 1330
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + DEI KA+++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I LP++ D+ V + G S GQ+Q + R L++ +IL+LDEA +++D+ ++A+
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
+Q + + T I +AHR+ TV ++D++ G ++E +LM + KLV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 27/236 (11%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIPKISG-- 652
+FS+ + L+G+NL +K Q +A+ G+ G GKS+ LY L + I G
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 653 --TVN---LYGSIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINN 704
T+N L I VSQ + + +I +NI YG+ MD+ +KA+K I
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE--IEKAVKEANAYDFIMK 511
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
H T +G+RG LSGGQKQRI +ARA+ + I L D+ SA+D + A V
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-----VVQ 566
Query: 765 AALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
AAL+K +T I++ H++ + D I +GG I + GN+ EL+ + +LV
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 21/223 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658
F++ +IP L+G++L++K Q +A+ GS G GKS+++ + ++G+V L G
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 659 ----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF--- 705
+ VSQ + SI +NI YG Y++ ++A A + +I+ F
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA-AKEANIHQFIDS 1156
Query: 706 --DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
D + T +G +G LSGGQKQRI +ARA+ I L D+ SA+D + + E +
Sbjct: 1157 LPDKYN-TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV-QEAL 1214
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
A E +T I++ H++ + D I+V++ G++ + G +Q+LL
Sbjct: 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 142/277 (51%), Gaps = 8/277 (2%)
Query: 1178 ANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKG 1235
A +S I + + PE + P+ +G ++ + Y RP+ P VL+G
Sbjct: 995 AKATVSASHIIRIIEKTPEIDSYSTQGLKPNM--LEGNVQFSGVVFNYPTRPSIP-VLQG 1051
Query: 1236 ITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295
++ + ++ L R +P GS+ +DG +I + ++ LR +L I
Sbjct: 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111
Query: 1296 IPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
+ QEP LF S+ N+ D + S +EI +A ++ + I SLP+K ++ V D+G
Sbjct: 1112 VSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVP 1412
S GQ+Q + R L+++ IL+LDEA +++D+ ++ ++Q + + T I +AHR+
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 1413 TVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
T+ ++D+++V+ GK+ E+ +L+ + +V+
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVS 1268
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 119/238 (50%), Gaps = 2/238 (0%)
Query: 1213 KGRIELRQLKIRYRPNAPL-VLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAG 1271
+G +E + + Y + +LKG+ + + RL +P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-PLGLYSDDEIWKALEKCQ 1330
G + IDG DI ++ ++ LR + ++ QEP LF ++ N+ + DEI KA+++
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I LP++ D+ V + G S GQ+Q + R L++ +IL+LDEA +++D+ ++A+
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
+Q + + T I +AHR+ TV ++D++ G ++E +LM + KLV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 21/223 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658
F++ +IP L+G++L++K Q +A+ GS G GKS+++ + ++G+V L G
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 659 ----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF--- 705
+ VSQ + SI +NI YG Y++ ++A A + +I+ F
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA-AKEANIHQFIDS 1156
Query: 706 --DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
D + T +G +G LSGGQKQRI +ARA+ I L D+ SA+D + + E +
Sbjct: 1157 LPDKYN-TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV-QEAL 1214
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
A E +T I++ H++ + D I+V++ G++ + G +Q+LL
Sbjct: 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 27/236 (11%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIPKISG-- 652
+FS+ + L+G+NL +K Q +A+ G+ G GKS+ LY L + I G
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 653 --TVN---LYGSIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINN 704
T+N L I VSQ + + +I +NI YG+ MD+ +KA+K I
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE--IEKAVKEANAYDFIMK 511
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
H T +G+RG LSGGQKQRI +ARA+ + I L D+ SA+D + A V
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-----VVQ 566
Query: 765 AALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
AAL+K +T I++ H++ + D I +GG I + GN+ EL+ + +LV
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 158/315 (50%), Gaps = 20/315 (6%)
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL-LD 575
VI +G L S + T+ + L + P+R + + + + Q S DR+ + D
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321
Query: 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAG 635
+++ N V ++ + I +F ++ A P L+ +NL I+ + +A G G G
Sbjct: 322 YDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGG 379
Query: 636 KSSLLYAILGEIPKISGTV-------------NLYGSIAYVSQTSWIQSGSIRDNILYGK 682
KS+L+ I SG + +L I V Q + + S ++++NIL G+
Sbjct: 380 KSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 439
Query: 683 PM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
P D+ + A A A D I N G TE+G+RG+ LSGGQKQR+ +AR N+ I
Sbjct: 440 PTATDEEVVEAAKMANAHDF-IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ D+ SA+D + ++ E + + +T ++V H++ ++ D+I+V+E G I ++G
Sbjct: 499 LILDEATSALDLES-ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557
Query: 801 NYQELLLAGTAFEQL 815
++EL+ A+E L
Sbjct: 558 THRELIAKQGAYEHL 572
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 109/485 (22%), Positives = 206/485 (42%), Gaps = 45/485 (9%)
Query: 985 FFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFA 1044
F+ + VG++++R+ +D+ I ++ + ++ + IM F+ ++ + A+F
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 1045 MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY---- 1100
+ R+L R A V + E QG+ +++F + D +N+
Sbjct: 171 FPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKN 230
Query: 1101 -------LKLVDIDASLFFHTNGVMEW---LILRVEALQNXXXXXXXXXXVLIPRGYVAP 1150
LK +A F N V + +++ V A L G +
Sbjct: 231 TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAY-------------LAISGSITV 277
Query: 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED---KRPP 1207
G + + Y L G L + L S++R+ Q I ED K
Sbjct: 278 GTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQL---------IDEDYDIKNGV 328
Query: 1208 SSWPF---KGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALF 1264
+ P +GRI++ + +Y N +LK I + + LI+ +
Sbjct: 329 GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
Query: 1265 RLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG--LYSDDEI 1322
R + G ILIDG +I LR ++ ++ Q+ LF +V+ N+ LG +D+E+
Sbjct: 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI-LLGRPTATDEEV 447
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+A + I +LP D+ V + G S GQ+Q + R+ L IL+LDEA ++
Sbjct: 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNS 1442
+D +++I+Q + + T + VAHR+ T+ +D ++V+ G ++E +L+
Sbjct: 508 LDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG 567
Query: 1443 SFSKL 1447
++ L
Sbjct: 568 AYEHL 572
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 116/194 (59%), Gaps = 2/194 (1%)
Query: 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPLGL 1316
+ S L R +P G I IDG I ++ L++ R ++ + Q+ + G++R NL G
Sbjct: 44 IFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD 103
Query: 1317 YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
Y+D+++W+ L+ ++ + ++P++L++ V + G S GQRQ + R L+ +IL+L
Sbjct: 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163
Query: 1377 DEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSK 1436
DEA AS+DS +++++Q+ + T + +AHR+ T++D+D + + G++ + ++
Sbjct: 164 DEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNE 223
Query: 1437 LMETNSSFSKLVAE 1450
L+ T+ ++K V+E
Sbjct: 224 LVATHPLYAKYVSE 237
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 114/221 (51%), Gaps = 18/221 (8%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+F++D I LR ++ + + IA G G GKS++ + +G + + G
Sbjct: 8 DFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 660 ------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINNF 705
I +VSQ S I +G+IR+N+ YG D D + + + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + ++ + + +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALDS 184
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
++ +T +++ H++ + + D+I +E GQIT SG + EL+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/485 (20%), Positives = 208/485 (42%), Gaps = 28/485 (5%)
Query: 976 NSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTW 1035
N P+ FFD G +L+R++ D + ++V + G ++ ++ +M + +W
Sbjct: 106 NHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW 165
Query: 1036 QV----LVVAIFAMVAVRFVQRYYIATARELIRING--TTKAPVM--NYTAETSQG--VV 1085
Q+ +VVA A+ FV + + +R + G T+ A M + S G V
Sbjct: 166 QLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEV 225
Query: 1086 TIRAFNMV-DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLIP 1144
+ F+ V + Q +KLV + + +I + +L V
Sbjct: 226 ERKRFDKVSNSMRQQTMKLVS--------AQSIADPVIQMIASL--ALFAVLFLASVDSI 275
Query: 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDK 1204
R + PG + S F L L+ + + + + M + E D
Sbjct: 276 RAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE-----RDN 330
Query: 1205 RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALF 1264
+ G ++++ + Y+ L ++ + + + +
Sbjct: 331 GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390
Query: 1265 RLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEI 1322
R + GSI +DG D+ L +LR +++ Q LF ++ N+ G Y+ ++I
Sbjct: 391 RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+A + I ++P LD+ + + G + S GQRQ + R LL+ +L+LDEA ++
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNS 1442
+D+ ++ +Q + + N TV+ +AHR+ T+ +D ++V+ G+++E + L+ +
Sbjct: 511 LDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
Query: 1443 SFSKL 1447
++++L
Sbjct: 571 AYAQL 575
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 188/408 (46%), Gaps = 41/408 (10%)
Query: 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE----KFKSLIESRREKEFKWL 493
+K +K A S ++L K++ +E +F + S R++ K +
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245
Query: 494 SEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIP 553
S + VI ++ + +V+FL + A L T V + + + P++ +
Sbjct: 246 SAQSIADP---VIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALT 302
Query: 554 EALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTL 613
S Q ++ + L+D E D+ + ++ + V +++ F++ + P L
Sbjct: 303 SVTS-EFQRGMAACQTLFGLMDLETERDN-GKYEAERVNGEVDVKDVTFTYQGK-EKPAL 359
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSL--LYAILGEIPKISGTV-------------NLYG 658
V+ I + +A+ G G+GKS++ L+ ++ SG++ NL
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD--SGSICLDGHDVRDYKLTNLRR 417
Query: 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKAR--YDKAIKACALDKDINNFDHGDLTEIGQR 716
A VSQ + + +I +NI Y + R ++A + + I N G T IG+
Sbjct: 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTV 772
G +LSGGQ+QR+ +ARA+ DA + + D+ SA+D + + AAL++ KTV
Sbjct: 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-----ERAIQAALDELQKNKTV 532
Query: 773 ILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHR 820
+++ H++ + + D ILV++ G+I + G + +LL A+ QL HR
Sbjct: 533 LVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL---HR 577
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 190/406 (46%), Gaps = 49/406 (12%)
Query: 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK-FKSLIESRREKEFKWLSE 495
+K +Q + + ++ L+ E+L I Q E K F + R + K +S
Sbjct: 192 ISKNMQNTMGQVTTSAEQMLKGHKEVL----IFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 496 AQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEA 555
+ + +I ++ ++ V++ + L A TI V +++ ++ P++ +
Sbjct: 248 SSISDP---IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLT-- 302
Query: 556 LSIMIQVKVSFDRINAF------LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELA 609
V F R A +LD E D+ +R+ + ++ ++ + F++ P
Sbjct: 303 -----NVNAQFQRGMAACQTLFAILDSEQEKDEGKRV-IDRATGDLEFRNVTFTY-PGRE 355
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------------GEIPKISGTVNL 656
+P LR +NL I + +A+ G G+GKS++ I G + +L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 657 YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY---DKAIKACALDKDINNFDHGDLTEI 713
+A VSQ + + ++ +NI Y + + +R + A A A+D IN D+G T I
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDF-INKMDNGLDTII 474
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK---- 769
G+ G+ LSGGQ+QRI +ARA+ D+ I + D+ SA+D + + AAL++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQAALDELQKN 529
Query: 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+T +++ H++ + + D I+V+E G I + G + ELL + QL
Sbjct: 530 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 2/236 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGS 1273
G +E R + Y L+ I + S + R + G
Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--YSDDEIWKALEKCQL 1331
IL+DG D+ L LR +++++ Q LF +V N+ YS ++I +A
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
I+ + N LD+ + + G S GQRQ + R LL+ + IL+LDEA +++D+ ++ +
Sbjct: 460 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
Q + + N T + +AHR+ T+ +D ++V+ G ++E S+L+ + +++L
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 190/406 (46%), Gaps = 49/406 (12%)
Query: 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK-FKSLIESRREKEFKWLSE 495
+K +Q + + ++ L+ E+L I Q E K F + R + K +S
Sbjct: 192 ISKNMQNTMGQVTTSAEQMLKGHKEVL----IFGGQEVETKRFDKVSNRMRLQGMKMVSA 247
Query: 496 AQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEA 555
+ + +I ++ ++ V++ + L A TI V +++ ++ P
Sbjct: 248 SSISDP---IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP------- 297
Query: 556 LSIMIQVKVSFDRINA------FLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELA 609
L + V F R A +LD E D+ +R+ ++++ V+ + F++ P
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV-IERATGDVEFRNVTFTY-PGRD 355
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGTVNLY----- 657
+P LR +NL I + +A+ G G+GKS++ I GEI + Y
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASL 415
Query: 658 -GSIAYVSQTSWIQSGSIRDNILYGKPMDKARY---DKAIKACALDKDINNFDHGDLTEI 713
+A VSQ + + ++ +NI Y + +R + A A A+D IN D+G T I
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDF-INKMDNGLDTVI 474
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK---- 769
G+ G+ LSGGQ+QRI +ARA+ D+ I + D+ SA+D + + AAL++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQAALDELQKN 529
Query: 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+T +++ H++ + + D I+V+E G I + G + +LL + QL
Sbjct: 530 RTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 2/236 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGS 1273
G +E R + Y L+ I + S + R + G
Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGE 399
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKALEKCQL 1331
IL+DG D+ L LR +++++ Q LF +V N+ YS ++I +A
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
I+ + N LD+ + + G S GQRQ + R LL+ + IL+LDEA +++D+ ++ +
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
Q + + N T + +AHR+ T+ +D ++V+ G ++E + L+E +++L
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 109/196 (55%), Gaps = 14/196 (7%)
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY----- 1317
L+R + A G I I G ++ +R + I+PQ+ LF +++ N+ LY
Sbjct: 66 LYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDA 120
Query: 1318 SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
+D+E+ KA + QL I +LP K D+ V ++G S G+RQ + R LLK +I++ D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 1378 EANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
EA +S+DS T+ + Q+ + N T+I +AHR+ T+ ++ +++L+ GK++E L
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL 240
Query: 1438 METNSSFSKLVAEYWS 1453
++ N + AE W+
Sbjct: 241 LKLNGEY----AEMWN 252
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEI 647
+++ + NFS+ + TL+ +N I A+ G G+GKS++ Y G+I
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 648 PKISG-TVNLYGS------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACAL 698
KI G VN Y I V Q + + + +I+ NILYGK +D + KA K+ L
Sbjct: 77 -KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK-LDATDEEVIKATKSAQL 134
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I T +G +G+ LSGG++QRI +AR + D I +FD+ S++D+ T L
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY-L 193
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
F + V + +T+I++ H++ +S + I++L G+I + G +++LL + ++ N
Sbjct: 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 5/251 (1%)
Query: 1201 VEDKRPPSSWPF---KGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXX 1257
E K P + P KGRIE + Y + L+ ++ T
Sbjct: 36 TEVKDLPGAGPLRFQKGRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 1258 XLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY 1317
++ LFR + + G I IDG DI + LR + ++PQ+ LF ++ N+ +
Sbjct: 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT 154
Query: 1318 S-DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
+ +DE+ A + + I + P + V + G S G++Q + R +LK I++L
Sbjct: 155 AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214
Query: 1377 DEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSK 1436
DEA +++D++ + +Q + + +N T I VAHR+ TV+++D ++V+ G ++E
Sbjct: 215 DEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEA 274
Query: 1437 LMETNSSFSKL 1447
L+ ++ +
Sbjct: 275 LLSRGGVYADM 285
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 23/222 (10%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISGT-------VNLYG 658
TL+ V+ + Q +A+ G GAGKS++L Y I +I G +L
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 659 SIAYVSQTSWIQSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I V Q + + + +I DNI YG+ + A +A + I F G T++G+RG
Sbjct: 129 HIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG 188
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVI 773
L LSGG+KQR+ +AR + I L D+ SA+D T + A+L K +T I
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALD-----TSNERAIQASLAKVCANRTTI 243
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+V H++ + D+ILV++ G I + G ++ LL G + +
Sbjct: 244 VVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + + L + R P G +L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
IDG D+ LR ++ ++ Q+ L S+ N+ +P G+ + I+ A +
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA-KLAGAH 121
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D ++ ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKL 1447
R + + TVI +AHR+ TV ++D ++V+ GK++E + +L+ E S +S L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 11 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 68
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 69 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 128
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 187
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + + L + R P G +L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
IDG D+ LR ++ ++ Q+ L S+ N+ +P G+ + I+ A +
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA-KLAGAH 121
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D ++ ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKL 1447
R + + TVI +AHR+ TV ++D ++V+ GK++E + +L+ E S +S L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 11 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 68
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 69 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 128
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 187
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + + L + R P G +L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
IDG D+ LR ++ ++ Q+ L S+ N+ +P G+ + I+ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA-KLAGAH 119
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D ++ ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKL 1447
R + + TVI +AHR+ TV ++D ++V+ GK++E + +L+ E S +S L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 9 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 66
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 67 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 185
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 186 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + + L + R P G +L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
IDG D+ LR ++ ++ Q+ L S+ N+ +P G+ + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA-KLAGAH 125
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKL 1447
R + + TVI +AHR+ TV ++D ++V+ GK++E + +L+ E S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 15 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 72
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 191
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + + L + R P G +L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
IDG D+ LR ++ ++ Q+ L S+ N+ +P G+ + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA-KLAGAH 125
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS L ++ V ++G S GQRQ + R L+ +IL+ D+A +++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKL 1447
R + + TVI +AHR+ TV ++D ++V+ GK++E + +L+ E S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 15 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 72
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD SA+D + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN-MHKI 191
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 9/244 (3%)
Query: 1212 FKGRIELRQLKIRYRPNAP--LVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEP 1269
KG ++ + + Y PN P VL+G+T T + + L L +P
Sbjct: 13 MKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD---DEIWKAL 1326
GG +L+DG + L +++ + QEP LF S R N+ GL +EI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA-YGLTRTPTMEEITAVA 130
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ IS P D+ V + G S GQRQ L R L+++ R+L+LD+A +++D+
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAG 190
Query: 1387 TDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
+QR++ + E+++ TV+ + H++ + ++ L G + E +LME +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 1445 SKLV 1448
+V
Sbjct: 251 RSMV 254
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 24/242 (9%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK Q+ +F++ + L+G+ + + A+ G G+GKS++ + G V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
L G +A V Q + S R+NI YG + + + I A A++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 702 ----INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT--- 754
I+ F G TE+G+ G LSGGQ+Q + LARA+ + + D SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814
L E A +TV+L+THQ+ IL L+ G + + G + +L+ G +
Sbjct: 195 VQRLLYESPEWA--SRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 815 LV 816
+V
Sbjct: 253 MV 254
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 6/236 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + + L + R P G +L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
IDG D+ LR ++ ++ Q+ L S+ N+ +P G+ + I+ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA-KLAGAH 119
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D ++ ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKL 1447
R + + TVI +A R+ TV ++D ++V+ GK++E + +L+ E S +S L
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 9 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 66
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 67 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 185
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ ++ + DRI+V+E G+I + G ++ELL
Sbjct: 186 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 6/236 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + + L + R P G +L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
IDG D+ LR ++ ++ Q+ L S+ N+ +P G+ + I+ A +
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA-KLAGAH 125
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D ++ ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKL 1447
R + + TVI +A R+ TV ++D ++V+ GK++E + +L+ E S +S L
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 15 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 72
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 191
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ ++ + DRI+V+E G+I + G ++ELL
Sbjct: 192 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 9/244 (3%)
Query: 1212 FKGRIELRQLKIRYRPNAP--LVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEP 1269
KG ++ + + Y PN P VL+G+T T + + L L +P
Sbjct: 13 MKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD---DEIWKAL 1326
GG +L+DG + L +++ + QEP LF S R N+ GL +EI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA-YGLTRTPTMEEITAVA 130
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ IS P D+ V + G S GQRQ L R L+++ R+L+LD A +++D+
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 1387 TDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
+QR++ + E+++ TV+ + ++ + ++ L G + E +LME +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 1445 SKLV 1448
+V
Sbjct: 251 RSMV 254
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 24/242 (9%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK Q+ +F++ + L+G+ + + A+ G G+GKS++ + G V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
L G +A V Q + S R+NI YG + + + I A A++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 702 ----INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT--- 754
I+ F G TE+G+ G LSGGQ+Q + LARA+ + + D+ SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814
L E A +TV+L+T Q+ IL L+ G + + G + +L+ G +
Sbjct: 195 VQRLLYESPEWA--SRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 815 LV 816
+V
Sbjct: 253 MV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 9/244 (3%)
Query: 1212 FKGRIELRQLKIRYRPNAP--LVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEP 1269
KG ++ + + Y PN P VL+G+T T + + L L +P
Sbjct: 13 MKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD---DEIWKAL 1326
GG +L+DG + L +++ + QEP LF S R N+ GL +EI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA-YGLTRTPTMEEITAVA 130
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ IS P D+ V + G + GQRQ L R L+++ R+L+LD A +++D+
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 1387 TDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
+QR++ + E+++ TV+ + ++ + ++ L G + E +LME +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 1445 SKLV 1448
+V
Sbjct: 251 RSMV 254
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 24/242 (9%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK Q+ +F++ + L+G+ + + A+ G G+GKS++ + G V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
L G +A V Q + S R+NI YG + + + I A A++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 702 ----INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT--- 754
I+ F G TE+G+ G L+ GQ+Q + LARA+ + + D+ SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814
L E A +TV+L+T Q+ IL L+ G + + G + +L+ G +
Sbjct: 195 VQRLLYESPEWA--SRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 815 LV 816
+V
Sbjct: 253 MV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 89.7 bits (221), Expect = 1e-17, Method: Composition-based stats.
Identities = 69/246 (28%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIP 648
V+ Q+ +F++ + L+G+ ++ + A+ G G+GKS++ LY G
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 649 KISGTV-------NLYGSIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACAL 698
+ G L+ +A V Q + S+++NI YG KP + A+K+ A
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA- 133
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+ + G LSGGQ+Q + LARA+ + + DD SA+DA++ +
Sbjct: 134 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
Query: 759 FNECVMAALEK--KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + + E+ ++V+L+T + + + D IL LEGG I + G +Q+L+ + +V
Sbjct: 194 -EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 252
Query: 817 NAHRDA 822
A DA
Sbjct: 253 QAPADA 258
Score = 88.2 bits (217), Expect = 3e-17, Method: Composition-based stats.
Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 13/254 (5%)
Query: 1206 PPSSW----PFKGRIELRQLKIRYRPNAP--LVLKGITCTFSEXXXXXXXXXXXXXXXXL 1259
PPS +G ++ + + Y PN P LVL+G+T T +
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD 1319
+ L L +P GG +L+DG + + L +++ + QEP +F S++ N+ GL
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENI-AYGLTQK 118
Query: 1320 ---DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
+EI A K + IS LP D+ V + G S GQRQ L R L+++ +L+L
Sbjct: 119 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 178
Query: 1377 DEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434
D+A +++D+ + +++++ + E + +V+ + + V +D ++ L G + E
Sbjct: 179 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTH 238
Query: 1435 SKLMETNSSFSKLV 1448
+LME + +V
Sbjct: 239 QQLMEKKGCYWAMV 252
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 77.8 bits (190), Expect = 4e-14, Method: Composition-based stats.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660
++RGV+ I+ + + + G G+GK+++L I G G V + G ++
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 661 AYVSQT-SWIQSGSIRDNILYG-----KPMDK--ARYDKAIKACALDKDINNFDHGDLTE 712
V Q + Q ++ DN+ +G P D+ AR + ++ L+ N F H
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH----- 144
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL--FNECVMAALEKK 770
LSGGQ+QR+ LARA+ + LFD+PF+A+D L F V +
Sbjct: 145 ------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805
+V + Q E L DR+LVL G + Q G +E+
Sbjct: 199 SVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 1341 KLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--E 1398
+L+S + S GQ+Q L R L R ++L+ DE A+ID+ L+ +RQ +
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193
Query: 1399 FSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
T + V H ++ +D V+VL G + ++ P ++ E
Sbjct: 194 EMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 115/256 (44%), Gaps = 44/256 (17%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------S 659
+L ++L ++ + + G GAGK+ L I G +P SG + L G
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHD 73
Query: 660 IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
IA+V Q S +++ N+ +G M K + K + A D I + + + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-------LDRNPL 126
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILV 775
LSGG++QR+ LARA+ + I L D+P SA+D T +++ L KK TV+ +
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE--MLSVLHKKNKLTVLHI 184
Query: 776 TH-QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834
TH Q E DRI V+ G++ Q G +E+ FE+ V + G
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEI------FEKPVEGRVASFVGF-------- 230
Query: 835 GGAEKVEKGRTARPEE 850
E V KGR E+
Sbjct: 231 ---ENVLKGRVISAEQ 243
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 6/190 (3%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++++ ++ F + E + + +N D+ +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQAENFL--FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 652 GTVNLYGSIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
G + +Y SI +V Q S + S+ D +L G+ + K K+ + D+ +L
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP-KSHDYQVAMQALDYLNL 118
Query: 711 TEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALE 768
T + +R +LSGGQ+Q I +ARA+ ++ + L D+P SA+D + + + +A +
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 769 KKTVILVTHQ 778
TV+ THQ
Sbjct: 179 NMTVVFTTHQ 188
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT-DAILQRIIR-QEFSNCTVIT 1406
E + S GQRQL + R + ++++LDE +++D A D +L +I + N TV+
Sbjct: 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184
Query: 1407 VAHRVPTVI 1415
H+ V+
Sbjct: 185 TTHQPNQVV 193
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 73.6 bits (179), Expect = 8e-13, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 44/229 (19%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
GNF+ L +NL IK + +A+ G G+GKS+LLY I G SG +
Sbjct: 14 GNFT--------ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65
Query: 659 ----------SIAYVSQT-SWIQSGSIRDNILYGKPMDKA---RYDKAIKACA----LDK 700
++ V Q + ++ NI + + KA DK ++ A +DK
Sbjct: 66 DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK 125
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+N + LSGGQ+QR+ +ARA+ + ++ L D+P S +DA +
Sbjct: 126 LLNRYP-----------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174
Query: 761 ECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
E + L+K+ T + VTH Q E L+ DRI V+ G+I Q G E+
Sbjct: 175 E--LKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD-PLGL 1316
L+ + + +P G I D D+ + KD V L + Q L+ +V N+ PL L
Sbjct: 45 LLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL--VFQNWALYPHMTVYKNIAFPLEL 102
Query: 1317 YS--DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374
+EI K + + I L N+ +S GQ+Q + R L+K +L
Sbjct: 103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLS-------GGQQQRVAIARALVKEPEVL 155
Query: 1375 VLDEANASIDS----ATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLE 1430
+LDE +++D+ A L+R +++E TV + + +D + V+ G++L+
Sbjct: 156 LLDEPLSNLDALLRLEVRAELKR-LQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214
Query: 1431 YDEPSKL 1437
P ++
Sbjct: 215 VGTPDEV 221
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------IAY 662
L+ VN + + + V G G+GK++LL IL + +G + L GS + Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLL-KILAGLLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 663 VSQ--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
V Q +S I ++ +++ + +D++ K IK ++ D
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAAD-------P 138
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LNLSGGQKQR+ +A + D D+P S +D + +F E K +ILVTH
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELL 806
++E+L ++D IL + G I G+++E +
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFV 227
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 21/221 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSI 1274
RIEL + RY N VLK + F L+ L L+ A G I
Sbjct: 11 RIELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPT------LFRGSVRTNLDPLGLYSDDEIWKALEK 1328
+DG L R + + Q P+ V +L+ +GL + E+ K ++K
Sbjct: 68 FLDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGL-DESEMRKRIKK 123
Query: 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD 1388
+S L + + N S GQ+Q + +L + R L LDE + +D +
Sbjct: 124 VLELVGLSGL-------AAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 1389 -AILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428
I Q + + +I V H + + D D ++ +S G +
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 71.2 bits (173), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 26/218 (11%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISGTVNLYGSIA 661
++ L+G+N+ I+ + + V G G+GKS+ L + GEI I +NL
Sbjct: 15 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLKAKDT 72
Query: 662 YVSQT-----------SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+++ + ++ +NI PM ++ + KA A K + D L
Sbjct: 73 NLNKVREEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPRE-KAEA--KAMELLDKVGL 128
Query: 711 TEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ + LSGGQ QR+ +ARA+ + I LFD+P SA+D + + A E
Sbjct: 129 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T+++VTH++ F EV DR+L ++GG I + G ++L
Sbjct: 189 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 51/237 (21%), Positives = 97/237 (40%), Gaps = 26/237 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I++ QLK + + VLKGI E + L L + G I+
Sbjct: 4 IDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 61
Query: 1276 IDGVDICS--MGLKDLRVKLSIIPQEPTLFRGSVRTN---LDPLGLY------SDDEIWK 1324
IDG+++ + L +R ++ ++ Q LF N L P+ + ++ + +
Sbjct: 62 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME 121
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
L+K LK + P+ L S GQ Q + R L +I++ DE +++D
Sbjct: 122 LLDKVGLKDKAHAYPDSL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
Query: 1385 SATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+ +++Q T++ V H + + D V+ + G ++E +P L +
Sbjct: 171 PEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 71.2 bits (173), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 26/218 (11%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISGTVNLYGSIA 661
++ L+G+N+ I+ + + V G G+GKS+ L + GEI I +NL
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLKAKDT 93
Query: 662 YVSQT-----------SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+++ + ++ +NI PM ++ + KA A K + D L
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPRE-KAEA--KAMELLDKVGL 149
Query: 711 TEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ + LSGGQ QR+ +ARA+ + I LFD+P SA+D + + A E
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T+++VTH++ F EV DR+L ++GG I + G ++L
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 51/237 (21%), Positives = 97/237 (40%), Gaps = 26/237 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSIL 1275
I++ QLK + + VLKGI E + L L + G I+
Sbjct: 25 IDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 1276 IDGVDICS--MGLKDLRVKLSIIPQEPTLFRGSVRTN---LDPLGLY------SDDEIWK 1324
IDG+++ + L +R ++ ++ Q LF N L P+ + ++ + +
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME 142
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
L+K LK + P+ L S GQ Q + R L +I++ DE +++D
Sbjct: 143 LLDKVGLKDKAHAYPDSL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
Query: 1385 SATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+ +++Q T++ V H + + D V+ + G ++E +P L +
Sbjct: 192 PEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 43/237 (18%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
SV++Q +W + + +NLDI + + G G GKS+LL I G SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG- 58
Query: 654 VNLYGSIAYVSQTSWIQSG--------------SIRDNILYGKPMDKARYDKAIKACALD 699
+L+ ++ T + G S+ +N+ +G +K
Sbjct: 59 -DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG-----------LKLAGAK 106
Query: 700 KDINNFDHGDLTEIGQ-------RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K++ N + E+ Q + LSGGQ+QR+ + R + + ++L D+P S +DA
Sbjct: 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 753 HTAATLFNECVMAALEK---KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E ++ L K +T+I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 167 ALRVQMRIE--ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNC------TVITV 1407
S GQRQ +GR L+ + +LDE +++D+A L+ +R E S T+I V
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----LRVQMRIEISRLHKRLGRTMIYV 190
Query: 1408 AH-RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSCRRN 1458
H +V + +D ++VL G++ + +P +L + + VA + S + N
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA--DRFVAGFIGSPKMN 240
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 43/237 (18%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
SV++Q +W + + +NLDI + + G G GKS+LL I G SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG- 58
Query: 654 VNLYGSIAYVSQTSWIQSG--------------SIRDNILYGKPMDKARYDKAIKACALD 699
+L+ ++ T + G S+ +N+ +G +K
Sbjct: 59 -DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG-----------LKLAGAK 106
Query: 700 KDINNFDHGDLTEIGQ-------RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K++ N + E+ Q + LSGGQ+QR+ + R + + ++L D+P S +DA
Sbjct: 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 753 HTAATLFNECVMAALEK---KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E ++ L K +T+I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 167 ALRVQMRIE--ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNC------TVITV 1407
S GQRQ +GR L+ + +LDE +++D+A L+ +R E S T+I V
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----LRVQMRIEISRLHKRLGRTMIYV 190
Query: 1408 AH-RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSCRRN 1458
H +V + +D ++VL G++ + +P +L + + VA + S + N
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA--DRFVAGFIGSPKMN 240
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 43/237 (18%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
SV++Q +W + + +NLDI + + G G GKS+LL I G SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG- 58
Query: 654 VNLYGSIAYVSQTSWIQSG--------------SIRDNILYGKPMDKARYDKAIKACALD 699
+L+ ++ T + G S+ +N+ +G +K
Sbjct: 59 -DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG-----------LKLAGAK 106
Query: 700 KDINNFDHGDLTEIGQ-------RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K++ N + E+ Q + LSGGQ+QR+ + R + + ++L D P S +DA
Sbjct: 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 753 HTAATLFNECVMAALEK---KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E ++ L K +T+I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 167 ALRVQMRIE--ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNC------TVITV 1407
S GQRQ +GR L+ + +LD+ +++D+A L+ +R E S T+I V
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAA----LRVQMRIEISRLHKRLGRTMIYV 190
Query: 1408 AH-RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSCRRN 1458
H +V + +D ++VL G++ + +P +L + + VA + S + N
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA--DRFVAGFIGSPKMN 240
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 40/229 (17%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
GNF+ + +NL IK + + + G G GK++ L I G G + +G
Sbjct: 22 GNFT--------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGD 72
Query: 659 -------------SIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDI 702
S+ + S W ++ +NI + K K DK ++ A I
Sbjct: 73 RDVTYLPPKDRNISMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 131
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ + LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E
Sbjct: 132 EEL-------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE- 183
Query: 763 VMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELLL 807
+ L++K T I VTH QVE ++ DRI V+ GQ+ Q G+ E+ L
Sbjct: 184 -IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 1266 LVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD-PLGL--YSDDE 1321
L EP G I D+ + KD + S++ Q ++ +V N+ PL + + DE
Sbjct: 60 LEEPTEGRIYFGDRDVTYLPPKDRNI--SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117
Query: 1322 IWK----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
I K A E Q++ ++ P +L S GQRQ + R ++ +L++D
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMD 166
Query: 1378 EANASIDSATDAILQRIIR--QEFSNCTVITVAH-RVPTVIDSDMVMVLSYGKLLEYDEP 1434
E +++D+ ++ I+ Q+ T I V H +V + D + V++ G+LL+ P
Sbjct: 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP 226
Query: 1435 SKL-METNSSF 1444
+++ + NS F
Sbjct: 227 TEVYLRPNSVF 237
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 40/229 (17%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
GNF+ + +NL IK + + + G G GK++ L I G G + +G
Sbjct: 23 GNFT--------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGD 73
Query: 659 -------------SIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDI 702
S+ + S W ++ +NI + K K DK ++ A I
Sbjct: 74 RDVTYLPPKDRNISMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 132
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ + LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E
Sbjct: 133 EEL-------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE- 184
Query: 763 VMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELLL 807
+ L++K T I VTH QVE ++ DRI V+ GQ+ Q G+ E+ L
Sbjct: 185 -IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 1317 YSDDEIWK----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372
+ DEI K A E Q++ ++ P +L S GQRQ + R ++
Sbjct: 114 FPKDEIDKRVRWAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPD 162
Query: 1373 ILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAH-RVPTVIDSDMVMVLSYGKLL 1429
+L++DE +++D+ ++ I+ Q+ T I V H +V + D + V++ G+LL
Sbjct: 163 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 222
Query: 1430 EYDEPSKL-METNSSF 1444
+ P+++ + NS F
Sbjct: 223 QIGSPTEVYLRPNSVF 238
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAY---VSQTSWI 669
L V+L I + + V G+ G+GKS+LL + G I SG V G + + I
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 670 QSGSIRDNILYGKPMDKARYDKAIKACALDKD-------INNFDHGDLTEIGQR-GLNLS 721
D + D+ + A+K D+D F D R LS
Sbjct: 83 AFQYPEDQFFAERVFDEVAF--AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLS 140
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE- 780
GG+K+R+ +A + ++ DI + D+P +D L KTVIL++H +E
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200
Query: 781 FLSEVDRILVLEGGQITQSGNYQELL 806
++ VDR++VLE G+ G E L
Sbjct: 201 VINHVDRVVVLEKGKKVFDGTRMEFL 226
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVP 1412
S G+++ + V++ IL+LDE +D L RI+ + + TVI ++H +
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199
Query: 1413 TVIDS-DMVMVLSYGK 1427
TVI+ D V+VL GK
Sbjct: 200 TVINHVDRVVVLEKGK 215
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+L I + + V G+ G+GKS+LL + G I SG V G +
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK--------KGY 76
Query: 673 SIRDNI--LYGKPMDKARYDK-------AIKACALDKD-------INNFDHGDLTEIGQR 716
IR NI + P D+ ++ A+K D+D F D R
Sbjct: 77 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 717 -GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGG+K+R+ +A + ++ DI + D+P +D L KTVIL+
Sbjct: 137 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 196
Query: 776 THQVE-FLSEVDRILVLEGGQITQSGNYQELL 806
+H +E ++ VDR++VLE G+ G E L
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 228
Score = 37.7 bits (86), Expect = 0.042, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVP 1412
S G+++ + V++ IL+LDE +D L RI+ + + TVI ++H +
Sbjct: 142 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 201
Query: 1413 TVIDS-DMVMVLSYGK 1427
TVI+ D V+VL GK
Sbjct: 202 TVINHVDRVVVLEKGK 217
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+ ++LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D + A E KT++
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+VTH++ F V ++ L G+I + G+ +++
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
Score = 33.9 bits (76), Expect = 0.69, Method: Composition-based stats.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 28/193 (14%)
Query: 1266 LVEPAGGSILIDGVDICSMGLKD-------------LRVKLSIIPQE------PTLFRGS 1306
L +P+ G+I+++G +I + KD LR +L+++ Q T+
Sbjct: 55 LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV 114
Query: 1307 VRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366
+ + LGL D +AL K K I + + + S GQ+Q + R
Sbjct: 115 MEAPIQVLGLSKHDARERAL-KYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARA 167
Query: 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLS 1424
L +L+ DE +++D + RI++Q T++ V H + S V+ L
Sbjct: 168 LAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 227
Query: 1425 YGKLLEYDEPSKL 1437
GK+ E +P ++
Sbjct: 228 QGKIEEEGDPEQV 240
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-----------YGSIAYV 663
GV+ ++K + +A+ G G GK++ L + G SG + Y + V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80
Query: 664 SQT-SWIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
Q + ++ +NI L + + K +K + A I+N + ++
Sbjct: 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-------LDRKPTQ 133
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGGQ+QR+ LARA+ + LFD+P S +DA+ + E + L+++ T + VT
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE--IKHLQQELGITSVYVT 191
Query: 777 H-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
H Q E ++ RI V G++ Q G E+
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 1318 SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
S DE+ K + + K I +L LD + S GQ+Q L R L+K+ ++L+ D
Sbjct: 106 SKDEVEKRVVEIARKLLIDNL---LDRKPT----QLSGGQQQRVALARALVKQPKVLLFD 158
Query: 1378 EANASIDSATDAILQ---RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434
E +++D+ I++ + ++QE +V + + + + V + GKL++Y P
Sbjct: 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP 218
Query: 1435 SKLMET 1440
++ ++
Sbjct: 219 DEVYDS 224
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----NLYGS------ 659
+ ++ ++L+IK + + + G G GK++ L I G G + NL
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 660 -------IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHG 708
+A V Q+ + ++ DNI + + + K DK ++ A +
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVA--------EXL 130
Query: 709 DLTEI-GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LTE+ ++ LSGGQ+QR+ L RA+ ++L D+P S +DA E + L
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAE--LKKL 188
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+++ T I VTH QVE + DRI V G++ Q G E+
Sbjct: 189 QRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDS----ATDAILQRIIRQEFSNCTVITVAH 1409
S GQRQ LGR +++R ++ + DE +++D+ A L+++ RQ T I V H
Sbjct: 144 SGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQ--LGVTTIYVTH 201
Query: 1410 -RVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
+V D + V + G+L + P ++
Sbjct: 202 DQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 59/231 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666
E I L+ VNL+IK + +++ G G+GKS++L N+ G + ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML--------------NIIGCLDKPTEG 60
Query: 667 SWIQSGSIRDNILYGKPMDKARYDK---------------AIKACAL------------- 698
+ +I+ N L + K R DK A++ L
Sbjct: 61 E-VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 699 DKDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
++ + + E+ +R N LSGGQ+QR+ +ARA+ N+ I L D P A+D+
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179
Query: 754 TAATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQITQ 798
T E +M L+K KTV++VTH + +RI+ L+ G++ +
Sbjct: 180 TG-----EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRV 1411
S GQ+Q + R L I++ D+ ++DS T + +++++ E TV+ V H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Query: 1412 PTVIDSDMVMVLSYGKL 1428
+ ++ L G++
Sbjct: 207 NVARFGERIIYLKDGEV 223
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 87/208 (41%), Gaps = 21/208 (10%)
Query: 616 VNLDIKWAQKIAVC-GSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IAYV 663
+N+D + + V G GAGKS L I G + G V L G+ I +V
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 664 SQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + S+ NI YG + +K G + ++ LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK------LGIAHLLDRKPARLSG 129
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VTHQ-VE 780
G++QR+ LARA+ + L D+P SAVD T L E E IL VTH +E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLA 808
D + V+ G+I + G +EL A
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSA 217
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 29/200 (14%)
Query: 1266 LVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDEIWK 1324
+V+P G + ++G DI L R + +PQ+ LF SV N+ GL + + + +
Sbjct: 47 IVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPHLSVYRNI-AYGLRNVERVER 103
Query: 1325 AL------EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
EK + + P +L S G+RQ L R L+ + R+L+LDE
Sbjct: 104 DRRVREMAEKLGIAHLLDRKPARL-----------SGGERQRVALARALVIQPRLLLLDE 152
Query: 1379 ANASIDSATDAILQ---RIIRQEFSNCTVITVAHR-VPTVIDSDMVMVLSYGKLLEYDEP 1434
+++D T +L R +++EF + ++ V H + + +D V V+ G+++ E
Sbjct: 153 PLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIV---EK 208
Query: 1435 SKLMETNSSFSKLVAEYWSS 1454
KL E S+ + VAE+ S+
Sbjct: 209 GKLKELFSAKNGEVAEFLSA 228
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 43/243 (17%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
D +K++E N+++ L+G+N++IK + A+ G G GKS+L G +
Sbjct: 4 EDYILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 651 SGTV---------------NLYGSIAYVSQTSWIQ--SGSIRDNILYGK-----PMD--K 686
SG + L SI V Q Q S S+ ++ +G P D +
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR 121
Query: 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746
R D A+K ++ + H LS GQK+R+ +A + + + + D+P
Sbjct: 122 KRVDNALKRTGIEHLKDKPTHC-----------LSFGQKKRVAIAGVLVMEPKVLILDEP 170
Query: 747 FSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802
+ +D + + ++ ++K+ T+I+ TH ++ + D + V++ G++ GN
Sbjct: 171 TAGLDPMGVSEIMK--LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 803 QEL 805
+E+
Sbjct: 229 KEV 231
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 1261 SALFR----LVEPAGGSILIDG--VDICSMGLKDLRVKLSIIPQEPT--LFRGSVRTNLD 1312
S LF+ +++P+ G IL D +D G+ LR + I+ Q+P LF SV ++
Sbjct: 48 STLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVS 107
Query: 1313 PLGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368
G + +DEI K ++ +T I L +K +S GQ++ + VL+
Sbjct: 108 -FGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLS-------FGQKKRVAIAGVLV 159
Query: 1369 KRNRILVLDEANASIDS-ATDAILQRIIR-QEFSNCTVITVAHRVPTV-IDSDMVMVLSY 1425
++L+LDE A +D I++ ++ Q+ T+I H + V + D V V+
Sbjct: 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE 219
Query: 1426 GKLLEYDEPSKLMETNSSFSKL 1447
G+++ P ++ K+
Sbjct: 220 GRVILQGNPKEVFAEKEVIRKV 241
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 41/222 (18%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLY------------- 657
L VN++I+ ++ + G GAGK++ + I G ++P T LY
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLI 76
Query: 658 -----GSIAYVSQTSWIQSGSIR--DNI---LYGKPMDKARYDKAIKACALDKDINNFDH 707
I V QT W ++ +NI L M K K ++ A DI++
Sbjct: 77 VPPEDRKIGMVFQT-WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-- 133
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVM 764
+ LSGGQ+QR+ LARA+ D + L D+PFS +DA +A L E V
Sbjct: 134 -----LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQ 187
Query: 765 AALEKKTVILVTHQ-VEFLSEVDRILVLEGGQITQSGNYQEL 805
+ L T+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 188 SRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 1318 SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
S +EI K +E+ I + N +S GQ+Q L R L+K +L+LD
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNHFPRELS-------GGQQQRVALARALVKDPSLLLLD 165
Query: 1378 EANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434
E +++D+ + ++++ S T++ V+H + +D V VL GKL++ +P
Sbjct: 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225
Query: 1435 SKLMETNSSF 1444
L + S
Sbjct: 226 EDLYDNPVSI 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 59/232 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666
E I L+ VNL+IK + +++ G G+GKS++L N+ G + ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML--------------NIIGCLDKPTE- 59
Query: 667 SWIQSGSIRDNILYGKPMDKARYDK---------------AIKACAL------------- 698
+ +I+ N L + K R DK A++ L
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 699 DKDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
++ + + E+ +R N LSGGQ+QR+ +ARA+ N+ I L D P A+D+
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 754 TAATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQITQS 799
T E +M L+K KTV++VTH + +RI+ L+ G++ +
Sbjct: 180 TG-----EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRV 1411
S GQ+Q + R L I++ D+ ++DS T + +++++ E TV+ V H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Query: 1412 PTVIDSDMVMVLSYGKL 1428
+ ++ L G++
Sbjct: 207 NVARFGERIIYLKDGEV 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 710 LTEI-GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
LTE+ ++ LSGGQ+QR+ L RA+ ++L D+P S +DA + E + L+
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE--LKKLQ 186
Query: 769 KK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
++ T I VTH QVE ++ DRI V+ G + Q G+ E+
Sbjct: 187 RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSA----TDAILQRIIRQEFSNCTVITVAH 1409
S GQRQ LGR ++++ ++ ++DE +++D+ A L+++ RQ T I V H
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTH 198
Query: 1410 -RVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439
+V + D + V++ G L + P ++ +
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 41/222 (18%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLY------------- 657
L VN++I+ ++ + G GAGK++ + I G ++P T LY
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLI 76
Query: 658 -----GSIAYVSQTSWIQSGSIR--DNI---LYGKPMDKARYDKAIKACALDKDINNFDH 707
I V QT W ++ +NI L M K K ++ A DI++
Sbjct: 77 VPPEDRKIGMVFQT-WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-- 133
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVM 764
+ LSG Q+QR+ LARA+ D + L D+PFS +DA +A L E V
Sbjct: 134 -----LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQ 187
Query: 765 AALEKKTVILVTHQ-VEFLSEVDRILVLEGGQITQSGNYQEL 805
+ L T+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 188 SRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 1318 SDDEIWKALEKC----QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373
S +EI K +E+ + ++ P +L S Q+Q L R L+K +
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKDPSL 161
Query: 1374 LVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430
L+LDE +++D+ + ++++ S T++ V+H + +D V VL GKL++
Sbjct: 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221
Query: 1431 YDEPSKLMETNSSF 1444
+P L + S
Sbjct: 222 VGKPEDLYDNPVSI 235
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 21/215 (9%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY----GSIAYVSQTSW 668
L+ ++ I K + G GAGK++LL + P SGTVNL+ G + Y ++T
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVR 96
Query: 669 IQSGSIRDNIL----YGKPMDKARYDKAIKACA----LDKDINNFDHGDLTEIGQRGLN- 719
G + ++L G+ + A K+ +D +I N H L +G
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQ 156
Query: 720 -----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVD--AHTAATLFNECVMAALEKKTV 772
LS G+KQR+ +ARA+ + + D+P + +D A + + + +
Sbjct: 157 QYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAX 216
Query: 773 ILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806
I VTH +E ++ +IL+L+ GQ Q G +++L
Sbjct: 217 IYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 38/221 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW-- 668
P L ++L + + + + G+ G GK++LL + G SG ++L G + T+
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 669 --------IQSG------SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDH 707
+Q G ++ NI YG ++ R + ++ + + + H
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH 137
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LSGGQ+QR LARA+ D ++ L D+PFSA+D + E ++AAL
Sbjct: 138 -----------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI-REDMIAAL 185
Query: 768 EK--KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
K+ + V+H + E L DRI V++ G+I Q+ + EL
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 59/231 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666
E I L+ VNL+IK + +++ G G+GKS+ L N+ G + ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXL--------------NIIGCLDKPTEG 60
Query: 667 SWIQSGSIRDNILYGKPMDKARYDK---------------AIKACAL------------- 698
+ +I+ N L + K R DK A++ L
Sbjct: 61 E-VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 699 DKDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
++ + E+ +R N LSGGQ+QR+ +ARA+ N+ I L D+P A+D+
Sbjct: 120 ERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSK 179
Query: 754 TAATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQITQ 798
T E + L+K KTV++VTH + +RI+ L+ G++ +
Sbjct: 180 TG-----EKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRV 1411
S GQ+Q + R L I++ DE ++DS T + +++++ E TV+ V H +
Sbjct: 147 SGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDI 206
Query: 1412 PTVIDSDMVMVLSYGKL 1428
+ ++ L G++
Sbjct: 207 NVARFGERIIYLKDGEV 223
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---------------Y 657
L GV++ + + G G+GKS+L+ I G + G V Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGK------PMDKARYDKAI--KACALDKDINNFDHGD 709
G + ++ ++ +N+L G+ P++ Y K I + ++K +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 710 LTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + R LSGGQ + +++ RA+ + + + D+P + V A +FN + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 769 KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQE 804
T +++ H+++ L+ +D + V+ GQI G +E
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSA-TDAILQRIIRQEFSNCTVITVAHRVP 1412
S GQ +L +GR L+ +++V+DE A + I ++ + T + + HR+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
Query: 1413 TVIDS-DMVMVLSYGKLL 1429
V++ D + V+ G+++
Sbjct: 215 IVLNYIDHLYVMFNGQII 232
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 28/256 (10%)
Query: 553 PEALSIMIQVKVSFDRINAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSWDPEL 608
P I Q K + + IN FL + L +++VR I K+ V+I+ P L
Sbjct: 235 PGVYGIFSQPKGTRNGINEFLRGY-LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRL 293
Query: 609 AIP----TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
L +IK + I + G G GK++ + + G G + ++AY
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP 353
Query: 665 QTSWIQS---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-L 720
Q +I++ G++ + + +D ++ + L K + D D R +N L
Sbjct: 354 Q--YIKADYEGTVYELL---SKIDASKLNSNFYKTELLKPLGIIDLYD------REVNEL 402
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQ 778
SGG+ QR+ +A + DADIYL D+P + +D + + + EK KT ++V H
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV-SRAIRHLXEKNEKTALVVEHD 461
Query: 779 VEFLSEV-DRILVLEG 793
V + V DR+ V EG
Sbjct: 462 VLXIDYVSDRLXVFEG 477
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 32/200 (16%)
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGE-IPKISGTVNLYGSIAYVSQTSWIQS------- 671
+K + + G G GKS+ + + G+ IP + G + + + + + +Q+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 672 GSIRDNILYGKPMDKARY----DKAIKACALDKDINNFDHGDLTEIG---------QRGL 718
G IR P+ K +Y KA+K ++ + G L E+ +R +
Sbjct: 104 GEIR-------PVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 719 -NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+LSGG+ QR+ +A A+ +A Y FD+P S +D + E K+V++V H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 778 Q---VEFLSEVDRILVLEGG 794
+++LS++ ++ E G
Sbjct: 217 DLAVLDYLSDIIHVVYGEPG 236
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 34/208 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNLYGS------------ 659
L+G++L +K + +++ G+ G+GKS+LLY ILG + G V L G
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 660 -----IAYVSQTSW-IQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHG 708
+ +V Q + I + +N++ GKP +A+ + ++ G
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG-------EYLLSELGLG 131
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
D ++ ++ LSGG++QR+ +ARA+ N+ + D+P +D+ + + +
Sbjct: 132 D--KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQI 796
++++VTH+ E R L ++ G++
Sbjct: 190 GTSIVMVTHERELAELTHRTLEMKDGKV 217
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 25/217 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---------------Y 657
L GV++ + + G G+GKS+L+ I G + G V Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGK------PMDKARYDKAI--KACALDKDINNFDHGD 709
G + ++ ++ +N+L G+ P++ Y K I + ++K +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 710 LTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + R LSGGQ + +++ RA+ + + + D P + V A +FN + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 769 KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQE 804
T +++ H+++ L+ +D + V+ GQI G +E
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSA-TDAILQRIIRQEFSNCTVITVAHRVP 1412
S GQ +L +GR L+ +++V+D+ A + I ++ + T + + HR+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
Query: 1413 TVIDS-DMVMVLSYGKLL 1429
V++ D + V+ G+++
Sbjct: 215 IVLNYIDHLYVMFNGQII 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---------------Y 657
L GV++ + + G G+GKS+L+ I G + G V Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGK------PMDKARYDKAI--KACALDKDINNFDHGD 709
G + ++ ++ +N+L G+ P++ Y K I + ++K +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 710 LTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + R LSGGQ + +++ RA+ + + + D+P + V A +FN + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 769 KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQE 804
T +++ H+++ L+ +D + V+ GQI G +E
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSA-TDAILQRIIRQEFSNCTVITVAHRVP 1412
S GQ +L +GR L+ +++V+DE A + I ++ + T + + HR+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
Query: 1413 TVIDS-DMVMVLSYGKLL 1429
V++ D + V+ G+++
Sbjct: 215 IVLNYIDHLYVMFNGQII 232
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 35/219 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L L +K A++ +CG G GKS+L+ AI +G V+ + + +T +++
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPT-QEECRTVYVEHD 503
Query: 671 -SGSIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
G+ D + G +A DK I+ D+ I LSGG
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE-----------MIAMPISALSGG 552
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
K ++ LARAV +ADI L D+P + +D A L N + T I ++H FL
Sbjct: 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI---TSITISHDSVFLD 609
Query: 784 EV-DRILVLEGGQITQ-SGNYQELLL---AGTAFEQLVN 817
V + I+ EG ++ + GN+ E + A A+E+L N
Sbjct: 610 NVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSN 648
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 672 VKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 655 NLYGS--IAYVSQTSW 668
+ + IAY+ Q ++
Sbjct: 731 YTHENCRIAYIKQHAF 746
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 20/143 (13%)
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+A V + SG R P+ + ++ LD +I H + RGL
Sbjct: 858 VAEVDMKEALASGQFR-------PLTRKEIEEHCSMLGLDPEI--VSHSRI-----RGL- 902
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
SGGQK ++ LA + + + D+P + +D + L + E VI++TH
Sbjct: 903 -SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK--ALKEFE-GGVIIITHSA 958
Query: 780 EFLSEV-DRILVLEGGQITQSGN 801
EF + + + ++ G++T SG+
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSGH 981
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
DV R +L + R VK G+F + E +I+ + I + G G GK++ +
Sbjct: 337 DVERETLVEYPRLVK-DYGSFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVK 386
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQS---GSIRDNILYGKPMDKARYDKAIKACAL 698
+ G G V ++AY Q +I++ G++ + L K +D ++ + L
Sbjct: 387 MLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYE--LLSK-IDSSKLNSNFYKTEL 441
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
K + D D + +LSGG+ QR+ +A + DADIYL D+P + +D +
Sbjct: 442 LKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
Query: 759 FNECVMAALEK--KTVILVTHQVEFLSEV-DRILVLEG 793
+ + +EK KT ++V H V + V DR++V EG
Sbjct: 497 -SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGG+ QR+ +A A+ A Y FD+P S +D + A E K V++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 779 ---VEFLSEVDRILVLEGG 794
+++LS+V ++ E G
Sbjct: 274 LAVLDYLSDVIHVVYGEPG 292
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
DV R +L + R VK G+F + E +I+ + I + G G GK++ +
Sbjct: 351 DVERETLVEYPRLVK-DYGSFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVK 400
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQS---GSIRDNILYGKPMDKARYDKAIKACAL 698
+ G G V ++AY Q +I++ G++ + L K +D ++ + L
Sbjct: 401 MLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYE--LLSK-IDSSKLNSNFYKTEL 455
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
K + D D + +LSGG+ QR+ +A + DADIYL D+P + +D +
Sbjct: 456 LKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 759 FNECVMAALEK--KTVILVTHQVEFLSEV-DRILVLEG 793
+ + +EK KT ++V H V + V DR++V EG
Sbjct: 511 -SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGG+ QR+ +A A+ A Y FD+P S +D + A E K V++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 779 ---VEFLSEVDRILVLEGG 794
+++LS+V ++ E G
Sbjct: 288 LAVLDYLSDVIHVVYGEPG 306
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L L +K A++ +CG G GKS+L AI +G V+ + + +T +++
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEEC-RTVYVEHD 497
Query: 671 -SGSIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
G+ D + G +A DK I+ D+ I LSGG
Sbjct: 498 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE-----------XIAXPISALSGG 546
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
K ++ LARAV +ADI L D+P + +D A L N + T I ++H FL
Sbjct: 547 WKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI---TSITISHDSVFLD 603
Query: 784 EV-DRILVLEGGQITQ-SGNYQELLL---AGTAFEQLVN 817
V + I+ EG ++ + GN+ E + A A+E+L N
Sbjct: 604 NVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSN 642
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 666 VKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Query: 655 NLYGS--IAYVSQTSW 668
+ + IAY+ Q ++
Sbjct: 725 YTHENCRIAYIKQHAF 740
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+A V + SG R P+ + ++ LD +I H + RGL
Sbjct: 852 VAEVDXKEALASGQFR-------PLTRKEIEEHCSXLGLDPEI--VSHSRI-----RGL- 896
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
SGGQK ++ LA + + + D+P + +D + L + E VI++TH
Sbjct: 897 -SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK--ALKEFE-GGVIIITHSA 952
Query: 780 EFLSEV-DRILVLEGGQITQSGN 801
EF + + + ++ G+ T SG+
Sbjct: 953 EFTKNLTEEVWAVKDGRXTPSGH 975
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L L +K A++ +CG G GKS+L AI +G V+ + + +T +++
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEEC-RTVYVEHD 503
Query: 671 -SGSIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
G+ D + G +A DK I+ D+ I LSGG
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE-----------XIAXPISALSGG 552
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
K ++ LARAV +ADI L D+P + +D A L N + T I ++H FL
Sbjct: 553 WKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI---TSITISHDSVFLD 609
Query: 784 EV-DRILVLEGGQITQ-SGNYQELLL---AGTAFEQLVN 817
V + I+ EG ++ + GN+ E + A A+E+L N
Sbjct: 610 NVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSN 648
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 672 VKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 655 NLYGS--IAYVSQTSW 668
+ + IAY+ Q ++
Sbjct: 731 YTHENCRIAYIKQHAF 746
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+A V + SG R P+ + ++ LD +I H + RGL
Sbjct: 858 VAEVDXKEALASGQFR-------PLTRKEIEEHCSXLGLDPEI--VSHSRI-----RGL- 902
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
SGGQK ++ LA + + + D+P + +D + L + E VI++TH
Sbjct: 903 -SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK--ALKEFE-GGVIIITHSA 958
Query: 780 EFLSEV-DRILVLEGGQITQSGN 801
EF + + + ++ G+ T SG+
Sbjct: 959 EFTKNLTEEVWAVKDGRXTPSGH 981
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 43/225 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGS-IAYVSQT- 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESE 76
Query: 667 ---------------SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINN 704
+ + S ++ N+ L P D K R + + L ++
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++ ++
Sbjct: 137 YPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE--LL 183
Query: 765 AALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+ ++ T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 23/192 (11%)
Query: 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDL---RVKLSIIPQEPTLFR-----GSVRTN 1310
LI + L P GS+L+DG ++ ++ +L R ++ +I Q L G+V
Sbjct: 47 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106
Query: 1311 LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370
L+ L DE+ + + + ++ L +K DS S N S GQ+Q + R L
Sbjct: 107 LE-LDNTPKDEVKRRVTEL---LSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASN 158
Query: 1371 NRILVLDEANASIDSATD----AILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY 1425
++L+ DEA +++D AT +L+ I R+ T++ + H + V D V V+S
Sbjct: 159 PKVLLCDEATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISN 216
Query: 1426 GKLLEYDEPSKL 1437
G+L+E D S++
Sbjct: 217 GELIEQDTVSEV 228
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 30/218 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR 675
V+L I + +A+ G GAGKS+LL + G + G +L G + SW R
Sbjct: 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ----NLNSWQPKALAR 85
Query: 676 DNILYGK--------------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-L 720
+ + M +A Y + AL + + D + QR L
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMA---QTDCLALAQRDYRVL 142
Query: 721 SGGQKQRIQLARAVY-----NDADIYLF-DDPFSAVDA-HTAATLFNECVMAALEKKTVI 773
SGG++QR+QLAR + +LF D+P SA+D H TL + E V
Sbjct: 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202
Query: 774 LVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810
V H + + DRI++L G++ G +E+L A T
Sbjct: 203 CVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 43/225 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGS-IAYVSQT- 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESE 99
Query: 667 ---------------SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINN 704
+ + S ++ N+ L P D K R + + L ++
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ NLSGGQKQR+ +ARA+ ++ + L D SA+D T ++ ++
Sbjct: 160 YPS-----------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LL 206
Query: 765 AALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+ ++ T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 23/192 (11%)
Query: 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDL---RVKLSIIPQEPTLFR-----GSVRTN 1310
LI + L P GS+L+DG ++ ++ +L R ++ +I Q L G+V
Sbjct: 70 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129
Query: 1311 LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370
L+ L DE+ + + + ++ L +K DS S N S GQ+Q + R L
Sbjct: 130 LE-LDNTPKDEVKRRVTEL---LSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASN 181
Query: 1371 NRILVLDEANASIDSATD----AILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY 1425
++L+ D+A +++D AT +L+ I R+ T++ + H + V D V V+S
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISN 239
Query: 1426 GKLLEYDEPSKL 1437
G+L+E D S++
Sbjct: 240 GELIEQDTVSEV 251
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 28/211 (13%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYGSIAYVSQTSWIQ 670
G++LDI A+ G +GKS+++ A+ +P +SG V G + ++
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINN-----FDHGDLTE------------- 712
++ L + ++ + +K KD + H +L E
Sbjct: 86 KIRWKEIALVPQAAQQS-LNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 713 ---IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ L LSGG KQR+ +A A+ D + + D+P SA+D T A +
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKML 204
Query: 770 K-TVILVTHQVEFLSEV-DRILVLEGGQITQ 798
K T+I VTH + +E+ D++ V+ GG + +
Sbjct: 205 KITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 43/225 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYG-SIAYVSQT- 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESE 99
Query: 667 ---------------SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINN 704
+ + S ++ N+ L P D K R + + L ++
Sbjct: 100 LTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ NLSGGQKQR+ +ARA+ ++ + L D SA+D T ++ ++
Sbjct: 160 YPS-----------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LL 206
Query: 765 AALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+ ++ T++L+TH+ + + + D + V+ G++ + E+
Sbjct: 207 KDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDL---RVKLSIIPQEPTLFR-----GSVRTN 1310
LI + L P GS+L+DG ++ ++ +L R ++ I Q L G+V
Sbjct: 70 LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALP 129
Query: 1311 LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370
L+ L DE+ + + + ++ L +K DS S N S GQ+Q + R L
Sbjct: 130 LE-LDNTPKDEVKRRVTEL---LSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASN 181
Query: 1371 NRILVLDEANASIDSATD----AILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY 1425
++L+ D+A +++D AT +L+ I R+ T++ + H V D V V+S
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEXDVVKRICDCVAVISN 239
Query: 1426 GKLLEYDEPSKL 1437
G+L+E D S++
Sbjct: 240 GELIEQDTVSEV 251
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 30/213 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L+G++ +I+ + + G GAGK++ L I I SG V ++G + +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG------KNVVEEPH 84
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNF---DHGDLTEIGQRGLNLSG------- 722
+R I Y P + Y + ++ + + F ++ E+ +R ++G
Sbjct: 85 EVRKLISY-LPEEAGAY-RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 723 -------GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
G +++ +ARA+ + + + D+P S +D A + A+ E T+++
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 776 TH---QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+H +VEFL DRI ++ G I ++G +EL
Sbjct: 203 SHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 34/188 (18%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA-----YVSQT 666
+L +NL++ +K+ + G G+GK++LL AI G +P SG + + G Y+ +
Sbjct: 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKIRNYIRYS 77
Query: 667 SWI----QSGSIRDNILYG----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ + + G ++I+Y K +D+ + + +KA L ++I + ++
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI----------LRRKLY 127
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILV 775
LS GQ ++ + A+ + +I D+PF VDA H + E K ILV
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY------GKEGILV 181
Query: 776 THQVEFLS 783
TH+++ L+
Sbjct: 182 THELDMLN 189
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QR++LA ++ N +Y+ D+P + + A L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TV+++ H ++ + D I+ L GGQI G +E+
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QR++LA ++ N +Y+ D+P + + A L +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TV+++ H ++ + D I+ L GGQI G +E+
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QR++LA ++ N +Y+ D+P + + A L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TV+++ H ++ + D I+ L GGQI G +E+
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
AI ++G++L + Q + + G+ GAGK++ L AI G + G + G
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 660 -----IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
IA V + I ++ +N+ G R DK L+ + F L E
Sbjct: 78 INRXGIALVPEGRRIFPELTVYENLXXGA---YNRKDKEGIKRDLEWIFSLFPR--LKER 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
+ Q G LSGG++Q + + RA+ + + D+P + + +F E + ++ T
Sbjct: 133 LKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTT 191
Query: 773 ILVTHQVEF--LSEVDRILVLEGGQITQSGNYQELL 806
IL+ Q L VLE GQI G ELL
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P L + + I+ + G G GK++LL I + + G + +Y + I
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPITKVKGKI- 80
Query: 671 SGSIRDNILYGKPMDKARYDKAIKA---CALDKD--INNFDHGDLTEIGQRGLNLSGGQK 725
+ + I+ + + Y KA+ + ++K+ ++ + ++ ++ ++ LS G
Sbjct: 81 -FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTI 139
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
+R+QLA + +A+IY+ DDP A+D + + + ++ L++K +++++ + E
Sbjct: 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIISSREEL 194
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLA---RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QRI+LA R +Y+ D+P + L
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TVI++ H ++ + D I+ L EGG I +G +E+
Sbjct: 858 GNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 720 LSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTV 772
LSGG+ QRI+LA + + IY+ D+P + H T E ++ L+K TV
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEP--TIGLHPRDT---ERLIKTLKKLRDLGNTV 519
Query: 773 ILVTHQVEFLSEVDRIL 789
I+V H E + D I+
Sbjct: 520 IVVEHDEEVIRNADHII 536
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 713 IGQRGLNLSGGQKQRIQLA---RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+GQ LSGG+ QRI+LA R +Y+ D+P + + L + V
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 770 KTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQELLLA 808
TVI V H+++ ++ D +L + +GG++ G E+ A
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 1354 SAGQRQLFCLGRVLLKRNR---ILVLDEANASIDSATDAILQR-IIRQEFSNCTVITVAH 1409
S G+ Q L L + R + VLDE + A LQR +++ + TVI V H
Sbjct: 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791
Query: 1410 RVPTVIDSDMVMVLSY------GKLLEYDEPSKLMETNSSFS 1445
++ V SD V+ + G+L+ P+++ + S +
Sbjct: 792 KMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVT 833
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL +++G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D P +++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSAL--DKILSALSQ 181
Query: 770 K--TVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ +++ +H + L R +L+GG++ SG +E+L G F +L +
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRMLIS 247
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ- 778
LSGG QR+ +A ++ +AD+Y+FD P S +D + + + L+ K VI+V H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAIRELLKNKYVIVVDHDL 197
Query: 779 --VEFLSEVDRILVLEG---GQITQS 799
+++L+++ I+ E G++++S
Sbjct: 198 IVLDYLTDLIHIIYGESSVYGRVSKS 223
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-AYVSQTSWIQ-SGSI 674
N + K + I + G G GK++ ++GEI G+V I +Y Q + G++
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLARA 733
+ + ++ A D + +++ +L + + +N LSGG+ Q++ +A
Sbjct: 348 Q------QYLENASKDALSTSSWFFEEVTK--RLNLHRLLESNVNDLSGGELQKLYIAAT 399
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-ILVTHQVEFLSEV-DRILVL 791
+ +AD+Y+ D P S +D + E+K V ++ H + + DRI+V
Sbjct: 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459
Query: 792 EG 793
+G
Sbjct: 460 KG 461
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL +++G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D P ++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSAL--DKILSALSQ 181
Query: 770 K--TVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ +++ +H + L R +L+GG++ SG +E+L G F +L +
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRMLIS 247
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL + +G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D+P +++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKILSALSQ 181
Query: 770 KTVILV--THQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ + +V +H + L R +L+GG+ SG +E+L G F +L +
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRXLIS 247
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL + +G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D+P +++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKILSALCQ 181
Query: 770 KTVILV--THQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ + +V +H + L R +L+GG+ SG +E+L G F +L +
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRXLIS 247
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEK 769
I Q +LSGG+ QR+ + A+ ADIYL D+P + +D+ + + ++ K
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NK 518
Query: 770 KTVILVTHQVEFLSEV-DRILVLEG 793
KT +V H + + D+++V EG
Sbjct: 519 KTAFIVEHDFIMATYLADKVIVFEG 543
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILVT 776
LSGG+ QR + + +AD+Y+FD+P S +D AA + + K VI V
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT---KYVICVE 278
Query: 777 HQVEFLS 783
H + L
Sbjct: 279 HDLSVLD 285
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 720 LSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGG+ QRI+LA + + +Y+ D+P + L T+I+V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 778 QVEFLSEVDRILVL------EGGQITQSGNYQELLLAGTAFEQLVNAHRDAITG 825
+ + D I+ + GG+I SG Y ELL ++D+ITG
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL-----------RNKDSITG 624
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+GQ LSGG+ QR++LA + + +Y+ D+P + + L N +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 770 KTVILVTHQVEFLSEVDRILVL 791
TVI++ H ++ + D I+ L
Sbjct: 917 NTVIVIEHNLDVIKTSDWIIDL 938
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIAYVSQTSWI 669
LRG++LD+ + A+ G G+GKS+L + G + GTV G + +S
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 76
Query: 670 QSGSIRDNILYGKPMDKARYDK---------AIKACALDKDINNFDHGDLTE-------- 712
G + + P++ A+++ + ++ FD DL E
Sbjct: 77 GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 713 ---IGQRGLNL--SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+ R +N+ SGG+K+R + + + ++ + D+ S +D + +
Sbjct: 134 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 193
Query: 768 EKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNY 802
K++ I+VTH L + D + VL G+I +SG++
Sbjct: 194 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIAYVSQTSWI 669
LRG++LD+ + A+ G G+GKS+L + G + GTV G + +S
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95
Query: 670 QSGSIRDNILYGKPMDKARYDK---------AIKACALDKDINNFDHGDLTE-------- 712
G + + P++ A+++ + ++ FD DL E
Sbjct: 96 GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 713 ---IGQRGLNL--SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+ R +N+ SGG+K+R + + + ++ + D+ S +D + +
Sbjct: 153 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212
Query: 768 EKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNY 802
K++ I+VTH L + D + VL G+I +SG++
Sbjct: 213 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 720 LSGGQKQRIQ------LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KT 771
LSGG++ I LA D + D+ FS++D + V+ LE+ K
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKI--ASVLKELERLNKV 337
Query: 772 VILVTHQVEFLSEVDRILVLEGG 794
++ +TH EF DR L + GG
Sbjct: 338 IVFITHDREFSEAFDRKLRITGG 360
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 720 LSGGQKQRIQ------LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KT 771
LSGG++ I LA D + D+ FS++D + V+ LE+ K
Sbjct: 280 LSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKI--ASVLKELERLNKV 337
Query: 772 VILVTHQVEFLSEVDRILVLEGG 794
++ +TH EF DR L + GG
Sbjct: 338 IVFITHDREFSEAFDRKLRITGG 360
>pdb|1QO0|D Chain D, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir.
pdb|1QO0|E Chain E, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir
Length = 196
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 478 FKSLIESRREKEFK-WLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIF 536
F S+ ++R E L+ R ++ + SP ++S +I L C + PL+A +
Sbjct: 57 FTSIFQNRHHDEIAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVL 116
Query: 537 TVLATLRSMGE 547
VL + R + E
Sbjct: 117 PVLVSARRISE 127
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 233 SLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIA 292
S P ++ ++ Y K + + RE + + ++ I N N+ ++R I
Sbjct: 308 SGAPSEQQTYDYAKTILSL--MTREKHPDGKILIIGGSIANF---TNVAATFKGIVRAIR 362
Query: 293 VVVGPLLLYAFVNYSNRGEENLQEGLSIVG 322
GPL + + RG N QEGL ++G
Sbjct: 363 DYQGPLKEHEVTIFVRRGGPNYQEGLRVMG 392
>pdb|1UP6|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
pdb|1UP6|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
pdb|1UP6|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
pdb|1UP6|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
pdb|1UP6|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
pdb|1UP6|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
pdb|1UP6|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
pdb|1UP6|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.55 Angstrom Resolution In The Tetragonal
Form With Manganese, Nad+ And Glucose-6-Phosphate
Length = 416
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQE--PTLFRGSVRTNLDP 1313
+ + G D+ ++L++KLS IP E PT F SVR ++P
Sbjct: 200 VFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNP 241
>pdb|1UP4|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
pdb|1UP4|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
pdb|1UP4|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
pdb|1UP4|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
pdb|1UP4|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
pdb|1UP4|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
pdb|1UP4|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
pdb|1UP4|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.85 Anstrom Resolution In The Monoclinic
Form
Length = 415
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQE--PTLFRGSVRTNLDP 1313
+ + G D+ ++L++KLS IP E PT F SVR ++P
Sbjct: 199 VFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNP 240
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 233 SLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIA 292
S P ++ ++ Y K + + RE + + ++ I N N+ ++R I
Sbjct: 308 SGAPSEQQTYDYAKTILSL--MTREKHPDGKILIIGGSIANF---TNVAATFKGIVRAIR 362
Query: 293 VVVGPLLLYAFVNYSNRGEENLQEGLSIVG 322
GPL + + RG N QEGL ++G
Sbjct: 363 DYQGPLKEHEVTIFVRRGGPNYQEGLRVMG 392
>pdb|1UP7|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
pdb|1UP7|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
pdb|1UP7|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
pdb|1UP7|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
pdb|1UP7|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
pdb|1UP7|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
pdb|1UP7|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
pdb|1UP7|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga
Maritima At 2.4 Anstrom Resolution In The Tetragonal Form
With Nad And Glucose-6-Phosphate
Length = 417
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQE--PTLFRGSVRTNLDPLGLY--SDDEIWKALEK 1328
+ + G D+ ++L++KLS IP E PT F SVR ++P Y + +++K +
Sbjct: 200 KVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKIST 259
Query: 1329 CQLK 1332
+L+
Sbjct: 260 HELR 263
>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From
Acinetobacter Calcoaceticus
Length = 371
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 537 TVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN---DDVRRISLQ 589
T+L + G P + IPE + + Q K FD++ F E+N D + I+L+
Sbjct: 310 TILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSRKGITLK 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,681,011
Number of Sequences: 62578
Number of extensions: 1481805
Number of successful extensions: 3557
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3162
Number of HSP's gapped (non-prelim): 273
length of query: 1467
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1356
effective length of database: 8,027,179
effective search space: 10884854724
effective search space used: 10884854724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)