Query 000481
Match_columns 1467
No_of_seqs 835 out of 5806
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 2E-267 4E-272 2540.4 146.5 1248 197-1455 122-1379(1381)
2 PLN03130 ABC transporter C fam 100.0 3E-214 6E-219 2170.1 174.7 1414 22-1453 29-1476(1622)
3 PLN03232 ABC transporter C fam 100.0 1E-209 2E-214 2128.8 174.1 1410 23-1453 30-1473(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 2E-207 4E-212 2109.4 176.7 1425 18-1451 20-1520(1522)
5 TIGR01271 CFTR_protein cystic 100.0 5E-196 1E-200 1989.7 155.1 1245 197-1454 3-1455(1490)
6 PTZ00243 ABC transporter; Prov 100.0 8E-187 2E-191 1898.2 155.1 1253 197-1453 59-1548(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 4E-155 9E-160 1459.9 116.2 1159 267-1451 15-1225(1228)
8 PTZ00265 multidrug resistance 100.0 5E-140 1E-144 1425.2 141.9 1172 273-1451 56-1465(1466)
9 KOG0058 Peptide exporter, ABC 100.0 8.5E-92 1.8E-96 842.7 60.7 515 937-1455 190-708 (716)
10 COG2274 SunT ABC-type bacterio 100.0 4.8E-83 1E-87 802.9 66.0 539 909-1451 163-708 (709)
11 COG1132 MdlB ABC-type multidru 100.0 2.2E-80 4.7E-85 788.1 67.6 536 911-1452 25-565 (567)
12 PRK11174 cysteine/glutathione 100.0 2.6E-78 5.6E-83 773.4 68.8 508 938-1451 66-584 (588)
13 TIGR00958 3a01208 Conjugate Tr 100.0 6.1E-78 1.3E-82 780.4 66.7 536 905-1448 166-711 (711)
14 KOG0058 Peptide exporter, ABC 100.0 1.9E-77 4.2E-82 718.9 64.9 550 269-820 139-705 (716)
15 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.7E-77 1E-81 773.1 70.6 505 938-1450 179-684 (686)
16 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.1E-76 2.3E-81 773.4 68.4 558 886-1448 142-709 (710)
17 PRK10790 putative multidrug tr 100.0 2.4E-76 5.3E-81 755.2 70.1 506 941-1453 71-577 (592)
18 TIGR01193 bacteriocin_ABC ABC- 100.0 1.7E-76 3.7E-81 770.5 67.8 556 886-1449 144-707 (708)
19 KOG0055 Multidrug/pheromone ex 100.0 2.5E-77 5.5E-82 755.0 50.0 512 936-1452 72-589 (1228)
20 PRK11176 lipid transporter ATP 100.0 4.5E-75 9.7E-80 743.2 69.3 506 941-1451 71-579 (582)
21 PRK11160 cysteine/glutathione 100.0 5.4E-75 1.2E-79 737.1 69.5 504 941-1449 66-572 (574)
22 TIGR03375 type_I_sec_LssB type 100.0 1.1E-74 2.4E-79 751.9 69.0 495 940-1439 192-688 (694)
23 COG4988 CydD ABC-type transpor 100.0 3.8E-74 8.2E-79 680.0 62.8 512 935-1453 40-557 (559)
24 COG4987 CydC ABC-type transpor 100.0 2.5E-74 5.4E-79 668.3 58.6 534 910-1449 30-571 (573)
25 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-73 2.5E-78 729.3 69.1 509 938-1451 57-568 (571)
26 TIGR01846 type_I_sec_HlyB type 100.0 1.5E-73 3.2E-78 740.7 70.1 559 885-1450 126-691 (694)
27 PRK11174 cysteine/glutathione 100.0 6.7E-73 1.5E-77 723.5 74.1 544 268-819 13-584 (588)
28 KOG0056 Heavy metal exporter H 100.0 5.8E-76 1.2E-80 662.1 39.3 511 937-1456 255-779 (790)
29 COG2274 SunT ABC-type bacterio 100.0 5.6E-72 1.2E-76 702.9 73.0 546 267-818 144-707 (709)
30 PRK13657 cyclic beta-1,2-gluca 100.0 7.7E-72 1.7E-76 712.7 70.5 544 905-1452 24-571 (588)
31 TIGR02204 MsbA_rel ABC transpo 100.0 1.3E-71 2.8E-76 710.8 69.1 512 938-1451 61-575 (576)
32 TIGR02868 CydC thiol reductant 100.0 6.9E-72 1.5E-76 705.4 64.2 465 944-1411 62-529 (529)
33 TIGR01192 chvA glucan exporter 100.0 9.9E-71 2.2E-75 698.9 69.6 541 908-1453 27-572 (585)
34 PRK10789 putative multidrug tr 100.0 4.8E-71 1E-75 701.0 66.1 510 938-1452 39-551 (569)
35 KOG0057 Mitochondrial Fe/S clu 100.0 2.7E-71 5.8E-76 643.0 52.8 499 936-1449 75-584 (591)
36 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.2E-69 7E-74 699.9 74.8 544 267-818 126-684 (686)
37 TIGR02857 CydD thiol reductant 100.0 8.7E-70 1.9E-74 686.3 64.4 482 937-1423 46-529 (529)
38 COG5265 ATM1 ABC-type transpor 100.0 7.4E-72 1.6E-76 627.1 39.8 489 957-1449 4-496 (497)
39 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.9E-69 1.5E-73 700.0 73.6 542 269-816 146-709 (710)
40 TIGR00958 3a01208 Conjugate Tr 100.0 7.3E-69 1.6E-73 695.7 72.8 539 272-815 156-710 (711)
41 TIGR03375 type_I_sec_LssB type 100.0 4.5E-68 9.8E-73 690.1 74.3 536 268-808 138-689 (694)
42 TIGR01193 bacteriocin_ABC ABC- 100.0 1E-67 2.2E-72 688.2 73.3 542 270-817 149-707 (708)
43 PRK11176 lipid transporter ATP 100.0 4.1E-67 8.8E-72 669.9 73.9 545 270-819 18-579 (582)
44 PTZ00265 multidrug resistance 100.0 2.8E-68 6.1E-73 724.3 66.8 546 902-1451 62-728 (1466)
45 COG1123 ATPase components of v 100.0 1.8E-69 3.9E-74 644.4 46.1 462 594-1448 5-529 (539)
46 TIGR01842 type_I_sec_PrtD type 100.0 2.3E-67 5.1E-72 665.0 66.5 491 937-1439 48-542 (544)
47 COG1132 MdlB ABC-type multidru 100.0 1.9E-66 4.1E-71 660.4 72.6 536 275-819 13-564 (567)
48 TIGR02203 MsbA_lipidA lipid A 100.0 3.6E-66 7.9E-71 660.4 74.0 544 270-818 7-567 (571)
49 PRK11160 cysteine/glutathione 100.0 3.9E-66 8.4E-71 656.2 73.2 542 271-817 10-572 (574)
50 PRK10790 putative multidrug tr 100.0 5.9E-66 1.3E-70 659.6 75.4 542 271-820 17-576 (592)
51 PRK10261 glutathione transport 100.0 5.9E-68 1.3E-72 676.0 49.9 483 593-1449 11-565 (623)
52 TIGR02204 MsbA_rel ABC transpo 100.0 3.2E-65 6.9E-70 652.1 73.8 548 268-817 9-573 (576)
53 TIGR01846 type_I_sec_HlyB type 100.0 4.6E-65 9.9E-70 661.3 74.9 545 269-818 131-691 (694)
54 COG4988 CydD ABC-type transpor 100.0 8.1E-65 1.8E-69 600.8 68.3 529 282-820 5-556 (559)
55 PRK13657 cyclic beta-1,2-gluca 100.0 1.1E-64 2.4E-69 646.8 74.8 541 272-819 14-570 (588)
56 PRK10789 putative multidrug tr 100.0 7.6E-65 1.7E-69 644.3 71.2 530 286-819 4-550 (569)
57 TIGR02868 CydC thiol reductant 100.0 4.8E-65 1.1E-69 643.1 69.0 505 271-779 7-529 (529)
58 TIGR01194 cyc_pep_trnsptr cycl 100.0 3E-65 6.5E-70 645.6 64.9 480 941-1431 59-551 (555)
59 PRK15134 microcin C ABC transp 100.0 3.4E-67 7.4E-72 660.7 46.1 447 594-1439 5-515 (529)
60 PRK13549 xylose transporter AT 100.0 5.4E-67 1.2E-71 655.4 44.7 440 594-1438 5-493 (506)
61 TIGR01192 chvA glucan exporter 100.0 1E-63 2.2E-68 634.8 75.0 542 271-819 13-570 (585)
62 TIGR01842 type_I_sec_PrtD type 100.0 9.5E-64 2.1E-68 632.1 70.9 522 275-807 4-542 (544)
63 PRK09700 D-allose transporter 100.0 1.8E-66 3.9E-71 651.8 44.6 438 594-1436 5-495 (510)
64 TIGR03269 met_CoM_red_A2 methy 100.0 4.8E-66 1E-70 649.5 45.6 438 595-1439 1-517 (520)
65 TIGR00956 3a01205 Pleiotropic 100.0 1.3E-64 2.9E-69 688.4 61.9 248 1174-1435 717-989 (1394)
66 PRK15064 ABC transporter ATP-b 100.0 4.7E-65 1E-69 641.4 52.4 474 595-1442 2-528 (530)
67 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-65 3.4E-70 641.7 46.6 446 594-1439 11-492 (510)
68 TIGR02857 CydD thiol reductant 100.0 3.8E-63 8.1E-68 625.9 68.6 511 276-791 2-529 (529)
69 PRK10762 D-ribose transporter 100.0 7.8E-66 1.7E-70 644.2 43.7 433 594-1438 4-483 (501)
70 PRK11288 araG L-arabinose tran 100.0 2.3E-65 5E-70 639.9 44.6 435 594-1438 4-484 (501)
71 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-65 5.5E-70 640.4 44.5 438 595-1436 2-489 (500)
72 TIGR01257 rim_protein retinal- 100.0 9.6E-63 2.1E-67 664.3 71.9 216 1213-1440 1935-2160(2272)
73 KOG0057 Mitochondrial Fe/S clu 100.0 8.8E-63 1.9E-67 572.1 58.6 526 287-818 40-585 (591)
74 PRK10982 galactose/methyl gala 100.0 1.6E-64 3.6E-69 631.2 45.2 432 597-1437 1-478 (491)
75 PRK10938 putative molybdenum t 100.0 1.7E-64 3.6E-69 631.5 44.3 440 594-1433 3-486 (490)
76 TIGR00957 MRP_assoc_pro multi 100.0 1.8E-61 3.9E-66 665.7 74.1 472 342-818 1029-1519(1522)
77 KOG0056 Heavy metal exporter H 100.0 8.6E-64 1.9E-68 563.7 40.8 528 284-820 222-775 (790)
78 COG4987 CydC ABC-type transpor 100.0 2.8E-61 6.1E-66 559.6 62.8 545 268-817 8-571 (573)
79 PLN03232 ABC transporter C fam 100.0 3.6E-62 7.8E-67 671.7 64.8 474 960-1452 366-841 (1495)
80 PRK10522 multidrug transporter 100.0 2.3E-61 5E-66 610.3 64.1 471 945-1436 58-536 (547)
81 PRK11819 putative ABC transpor 100.0 1.4E-62 3E-67 620.9 52.4 479 594-1439 6-533 (556)
82 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-62 4.1E-67 619.7 52.9 479 594-1439 4-531 (552)
83 COG4172 ABC-type uncharacteriz 100.0 5.1E-63 1.1E-67 550.8 41.7 453 593-1445 5-523 (534)
84 PLN03130 ABC transporter C fam 100.0 1.1E-60 2.3E-65 656.2 74.3 473 342-819 977-1474(1622)
85 PRK10636 putative ABC transpor 100.0 1.8E-61 3.8E-66 616.7 53.2 200 1215-1439 312-517 (638)
86 PTZ00243 ABC transporter; Prov 100.0 4.3E-59 9.3E-64 639.9 74.1 468 350-819 1030-1546(1560)
87 COG4618 ArpD ABC-type protease 100.0 1.2E-59 2.5E-64 540.2 48.7 487 942-1439 70-560 (580)
88 PRK11147 ABC transporter ATPas 100.0 1.6E-59 3.6E-64 600.5 52.2 199 1215-1438 319-527 (635)
89 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.1E-58 1.1E-62 579.8 64.7 510 271-799 11-551 (555)
90 COG4618 ArpD ABC-type protease 100.0 3.9E-58 8.4E-63 527.7 56.2 529 267-808 13-561 (580)
91 PLN03140 ABC transporter G fam 100.0 1.3E-58 2.9E-63 626.2 57.1 211 1215-1435 867-1106(1470)
92 PLN03073 ABC transporter F fam 100.0 1.1E-58 2.5E-63 591.0 52.1 199 1214-1437 507-712 (718)
93 TIGR01271 CFTR_protein cystic 100.0 2.6E-56 5.6E-61 612.6 72.7 473 342-820 949-1453(1490)
94 COG0488 Uup ATPase components 100.0 3.7E-58 8E-63 561.0 46.8 482 594-1439 3-525 (530)
95 PRK10522 multidrug transporter 100.0 1.8E-55 3.9E-60 556.5 64.4 507 267-799 3-530 (547)
96 PRK13409 putative ATPase RIL; 100.0 9.5E-58 2.1E-62 573.5 40.0 191 1215-1433 340-536 (590)
97 TIGR00954 3a01203 Peroxysomal 100.0 1.8E-55 3.9E-60 563.5 56.8 508 901-1425 97-653 (659)
98 COG5265 ATM1 ABC-type transpor 100.0 2.5E-56 5.5E-61 501.9 39.4 461 351-817 15-496 (497)
99 KOG0054 Multidrug resistance-a 100.0 3E-54 6.4E-59 559.6 62.7 487 947-1450 254-742 (1381)
100 COG1129 MglA ABC-type sugar tr 100.0 2.8E-55 6.1E-60 520.0 40.1 442 593-1434 7-485 (500)
101 TIGR00954 3a01203 Peroxysomal 100.0 3.5E-52 7.7E-57 533.1 60.7 504 278-793 97-653 (659)
102 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-54 2.7E-59 497.2 26.8 239 1214-1453 1-239 (275)
103 COG3845 ABC-type uncharacteriz 100.0 3.9E-53 8.4E-58 489.4 37.0 440 593-1436 3-489 (501)
104 PRK14257 phosphate ABC transpo 100.0 3.2E-50 7E-55 472.5 26.4 254 1179-1439 35-313 (329)
105 KOG0927 Predicted transporter 100.0 7.3E-46 1.6E-50 428.9 27.0 193 1215-1431 389-587 (614)
106 COG1126 GlnQ ABC-type polar am 100.0 3.9E-45 8.4E-50 381.8 22.1 212 1215-1439 2-225 (240)
107 COG1135 AbcC ABC-type metal io 100.0 2.7E-45 5.9E-50 401.6 21.5 224 1216-1450 2-244 (339)
108 cd03288 ABCC_SUR2 The SUR doma 100.0 1.4E-44 3E-49 413.9 28.3 238 1212-1449 16-254 (257)
109 PRK14257 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 425.3 25.1 263 528-808 23-314 (329)
110 cd03252 ABCC_Hemolysin The ABC 100.0 8.3E-44 1.8E-48 403.2 26.5 234 1216-1449 1-235 (237)
111 COG1126 GlnQ ABC-type polar am 100.0 4.2E-44 9.1E-49 374.0 20.8 202 594-809 2-227 (240)
112 cd03244 ABCC_MRP_domain2 Domai 100.0 2E-43 4.2E-48 395.9 26.0 221 1214-1434 1-221 (221)
113 COG1117 PstB ABC-type phosphat 100.0 3.2E-43 7E-48 364.9 17.8 217 1214-1439 6-237 (253)
114 KOG0062 ATPase component of AB 100.0 4.3E-42 9.3E-47 395.7 28.9 193 1213-1431 360-560 (582)
115 cd03251 ABCC_MsbA MsbA is an e 100.0 2.5E-42 5.4E-47 390.5 26.2 232 1216-1447 1-233 (234)
116 COG1125 OpuBA ABC-type proline 100.0 6.9E-43 1.5E-47 370.9 18.8 216 1216-1444 2-231 (309)
117 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.8E-42 1E-46 380.5 25.4 207 1210-1434 1-207 (207)
118 cd03253 ABCC_ATM1_transporter 100.0 7.1E-42 1.5E-46 387.3 26.8 233 1216-1449 1-234 (236)
119 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.9E-42 1.5E-46 392.1 26.9 222 594-818 2-236 (275)
120 cd03254 ABCC_Glucan_exporter_l 100.0 8.3E-42 1.8E-46 384.9 25.4 227 1214-1441 1-228 (229)
121 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.7E-41 3.7E-46 384.6 26.2 233 1216-1448 1-235 (238)
122 COG1120 FepC ABC-type cobalami 100.0 1.5E-41 3.3E-46 375.1 21.4 213 1215-1440 2-229 (258)
123 cd03245 ABCC_bacteriocin_expor 100.0 4.5E-41 9.8E-46 376.5 25.5 219 1214-1432 1-220 (220)
124 TIGR02314 ABC_MetN D-methionin 100.0 2.6E-41 5.7E-46 397.5 24.2 213 1216-1439 2-230 (343)
125 COG1135 AbcC ABC-type metal io 100.0 1.4E-41 3E-46 372.5 20.0 204 595-809 2-233 (339)
126 COG1116 TauB ABC-type nitrate/ 100.0 2E-41 4.3E-46 366.2 20.5 190 594-797 3-212 (248)
127 PRK13631 cbiO cobalt transport 100.0 4.3E-41 9.3E-46 394.3 23.9 218 1213-1440 19-266 (320)
128 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.1E-41 8.8E-46 369.5 21.7 209 1215-1440 4-228 (254)
129 cd03260 ABC_PstB_phosphate_tra 100.0 5.3E-41 1.1E-45 377.8 22.3 211 1216-1437 1-227 (227)
130 COG1124 DppF ABC-type dipeptid 100.0 6.9E-41 1.5E-45 357.8 21.4 223 1215-1448 3-241 (252)
131 COG1125 OpuBA ABC-type proline 100.0 2.6E-41 5.6E-46 358.9 17.8 202 595-810 2-228 (309)
132 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-40 3.3E-45 365.0 23.6 201 593-808 3-228 (254)
133 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-40 2.3E-45 369.5 21.6 214 1215-1440 3-229 (235)
134 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-40 3.6E-45 375.6 23.1 214 1216-1442 1-229 (235)
135 COG1127 Ttg2A ABC-type transpo 100.0 2E-40 4.3E-45 351.8 21.6 216 1214-1442 7-238 (263)
136 KOG0065 Pleiotropic drug resis 100.0 1.6E-39 3.5E-44 410.9 33.7 214 1213-1436 779-1018(1391)
137 PRK14269 phosphate ABC transpo 100.0 3.5E-40 7.5E-45 375.4 24.7 216 1215-1439 2-230 (246)
138 PRK13650 cbiO cobalt transport 100.0 2.4E-40 5.3E-45 382.8 23.8 215 1215-1440 4-230 (279)
139 PRK14250 phosphate ABC transpo 100.0 5E-40 1.1E-44 372.8 25.7 212 1215-1439 3-221 (241)
140 cd03248 ABCC_TAP TAP, the Tran 100.0 2.8E-40 6E-45 371.7 23.3 217 1212-1428 8-226 (226)
141 COG1120 FepC ABC-type cobalami 100.0 2E-40 4.2E-45 366.3 21.5 201 594-808 2-229 (258)
142 COG2884 FtsE Predicted ATPase 100.0 1.8E-40 3.8E-45 338.7 18.6 208 1216-1435 2-222 (223)
143 COG3638 ABC-type phosphate/pho 100.0 2E-40 4.3E-45 350.9 18.9 212 1215-1438 3-236 (258)
144 COG1136 SalX ABC-type antimicr 100.0 7.7E-40 1.7E-44 354.8 23.8 204 1216-1430 2-222 (226)
145 PRK13635 cbiO cobalt transport 100.0 6E-40 1.3E-44 379.2 23.5 216 1215-1441 5-231 (279)
146 cd03263 ABC_subfamily_A The AB 100.0 5.7E-40 1.2E-44 367.7 22.6 210 1216-1437 1-219 (220)
147 PRK11153 metN DL-methionine tr 100.0 7.3E-40 1.6E-44 388.3 24.2 213 1216-1439 2-230 (343)
148 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.8E-39 1E-43 370.0 30.2 219 590-813 35-253 (282)
149 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.4E-39 7.4E-44 371.2 28.8 219 1213-1448 37-256 (282)
150 cd03250 ABCC_MRP_domain1 Domai 100.0 8.9E-40 1.9E-44 361.5 23.1 199 1216-1427 1-204 (204)
151 COG3839 MalK ABC-type sugar tr 100.0 6E-40 1.3E-44 375.9 22.3 215 1215-1444 3-229 (338)
152 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-39 2.5E-44 346.0 22.5 205 592-811 6-239 (263)
153 PRK10744 pstB phosphate transp 100.0 1.7E-39 3.7E-44 372.7 25.3 219 1213-1440 11-245 (260)
154 COG1117 PstB ABC-type phosphat 100.0 2.6E-40 5.6E-45 343.3 16.3 206 593-809 6-239 (253)
155 PRK11650 ugpC glycerol-3-phosp 100.0 1.4E-39 3.1E-44 386.1 24.9 216 1215-1444 3-230 (356)
156 COG3839 MalK ABC-type sugar tr 100.0 8.5E-40 1.8E-44 374.7 22.0 202 594-809 3-225 (338)
157 PRK13647 cbiO cobalt transport 100.0 1.1E-39 2.3E-44 376.4 23.0 212 1215-1438 4-226 (274)
158 PRK13637 cbiO cobalt transport 100.0 1.2E-39 2.6E-44 378.3 23.3 213 1216-1439 3-234 (287)
159 PRK14242 phosphate transporter 100.0 1.7E-39 3.7E-44 371.5 24.2 216 1215-1439 6-237 (253)
160 PRK13646 cbiO cobalt transport 100.0 1.4E-39 2.9E-44 377.9 23.5 215 1215-1440 2-236 (286)
161 PRK11432 fbpC ferric transport 100.0 1.3E-39 2.8E-44 385.3 23.7 216 1214-1444 5-232 (351)
162 cd03252 ABCC_Hemolysin The ABC 100.0 4.7E-39 1E-43 364.4 27.0 220 595-816 1-234 (237)
163 cd03296 ABC_CysA_sulfate_impor 100.0 1.6E-39 3.4E-44 368.6 23.1 211 1215-1440 2-227 (239)
164 PRK14273 phosphate ABC transpo 100.0 2.2E-39 4.8E-44 370.7 24.1 216 1215-1439 7-238 (254)
165 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-39 2.5E-44 364.1 20.8 202 1216-1428 2-216 (216)
166 PRK13636 cbiO cobalt transport 100.0 1.8E-39 3.8E-44 376.4 23.2 214 1215-1440 5-232 (283)
167 TIGR02315 ABC_phnC phosphonate 100.0 1.8E-39 3.9E-44 369.3 22.6 211 1216-1438 2-234 (243)
168 COG4178 ABC-type uncharacteriz 100.0 1.7E-36 3.7E-41 366.5 49.4 466 937-1425 88-588 (604)
169 PRK14259 phosphate ABC transpo 100.0 4.3E-39 9.3E-44 370.7 25.8 219 1212-1439 10-253 (269)
170 PRK13643 cbiO cobalt transport 100.0 2.2E-39 4.7E-44 376.3 23.4 213 1216-1439 2-233 (288)
171 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.2E-39 4.8E-44 368.0 22.9 212 1216-1439 1-225 (242)
172 cd03256 ABC_PhnC_transporter A 100.0 2.2E-39 4.8E-44 368.1 22.6 212 1216-1439 1-234 (241)
173 PRK13632 cbiO cobalt transport 100.0 3.6E-39 7.8E-44 371.9 24.7 215 1215-1440 7-232 (271)
174 cd03247 ABCC_cytochrome_bd The 100.0 2.1E-39 4.5E-44 350.5 21.0 178 1216-1432 1-178 (178)
175 cd03250 ABCC_MRP_domain1 Domai 100.0 4.7E-39 1E-43 355.7 24.3 201 595-795 1-204 (204)
176 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-39 2.4E-44 356.4 18.8 202 594-809 2-229 (345)
177 PRK11629 lolD lipoprotein tran 100.0 2.8E-39 6E-44 365.1 22.7 208 1215-1433 5-228 (233)
178 PRK14235 phosphate transporter 100.0 4.7E-39 1E-43 370.1 25.0 219 1212-1439 16-251 (267)
179 TIGR00972 3a0107s01c2 phosphat 100.0 4.5E-39 9.7E-44 366.7 24.6 215 1216-1439 2-232 (247)
180 cd03259 ABC_Carb_Solutes_like 100.0 1.7E-39 3.6E-44 362.0 20.5 202 1216-1432 1-213 (213)
181 COG3840 ThiQ ABC-type thiamine 100.0 1.7E-39 3.6E-44 328.2 18.5 199 595-809 2-221 (231)
182 TIGR01186 proV glycine betaine 100.0 1.4E-39 3E-44 384.7 21.0 199 1230-1439 6-219 (363)
183 PRK14267 phosphate ABC transpo 100.0 3.4E-39 7.3E-44 369.2 23.3 217 1215-1440 4-238 (253)
184 cd03219 ABC_Mj1267_LivG_branch 100.0 2.7E-39 5.8E-44 366.2 21.9 211 1216-1439 1-232 (236)
185 COG4615 PvdE ABC-type sideroph 100.0 1.6E-36 3.5E-41 337.6 43.4 472 938-1436 51-533 (546)
186 PRK13640 cbiO cobalt transport 100.0 6.2E-39 1.4E-43 371.6 25.3 215 1214-1439 4-232 (282)
187 PRK14247 phosphate ABC transpo 100.0 5.3E-39 1.1E-43 366.9 24.3 217 1215-1440 3-235 (250)
188 COG1136 SalX ABC-type antimicr 100.0 5.9E-39 1.3E-43 347.9 23.2 194 595-798 2-222 (226)
189 COG3842 PotA ABC-type spermidi 100.0 1.5E-39 3.3E-44 374.6 19.7 203 593-809 4-228 (352)
190 COG3840 ThiQ ABC-type thiamine 100.0 3.3E-39 7.1E-44 326.1 19.6 210 1216-1442 2-222 (231)
191 cd03258 ABC_MetN_methionine_tr 100.0 3.5E-39 7.7E-44 364.4 22.0 213 1216-1439 2-230 (233)
192 PRK15079 oligopeptide ABC tran 100.0 6.7E-39 1.4E-43 377.1 24.8 221 1215-1446 8-259 (331)
193 PRK14244 phosphate ABC transpo 100.0 3E-39 6.5E-44 369.0 21.2 216 1215-1439 5-237 (251)
194 COG1116 TauB ABC-type nitrate/ 100.0 5.6E-39 1.2E-43 347.2 22.0 223 1215-1455 3-241 (248)
195 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.9E-39 6.3E-44 372.0 21.2 215 1217-1444 26-256 (269)
196 PRK14237 phosphate transporter 100.0 7.4E-39 1.6E-43 368.5 24.5 217 1214-1439 19-251 (267)
197 PRK10619 histidine/lysine/argi 100.0 6.7E-39 1.5E-43 367.3 24.0 215 1213-1439 3-241 (257)
198 TIGR03265 PhnT2 putative 2-ami 100.0 4.8E-39 1E-43 381.2 23.4 215 1215-1444 4-230 (353)
199 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.8E-39 6E-44 361.6 20.2 202 1216-1428 1-218 (218)
200 PRK13642 cbiO cobalt transport 100.0 7.3E-39 1.6E-43 370.3 24.2 216 1215-1441 4-231 (277)
201 PRK14251 phosphate ABC transpo 100.0 5.5E-39 1.2E-43 366.9 22.9 216 1215-1439 4-235 (251)
202 PRK14245 phosphate ABC transpo 100.0 6.1E-39 1.3E-43 366.2 23.2 216 1215-1439 3-234 (250)
203 PRK11308 dppF dipeptide transp 100.0 9.8E-39 2.1E-43 375.5 25.5 222 1215-1446 5-252 (327)
204 cd03265 ABC_DrrA DrrA is the A 100.0 5.7E-39 1.2E-43 359.4 22.4 208 1216-1437 1-219 (220)
205 cd03266 ABC_NatA_sodium_export 100.0 5.5E-39 1.2E-43 359.2 22.2 205 1216-1432 2-218 (218)
206 PRK13652 cbiO cobalt transport 100.0 8.4E-39 1.8E-43 369.8 24.2 214 1216-1441 4-229 (277)
207 PRK13651 cobalt transporter AT 100.0 7.7E-39 1.7E-43 373.2 23.9 215 1215-1440 2-255 (305)
208 PRK14239 phosphate transporter 100.0 9.8E-39 2.1E-43 365.2 24.1 216 1215-1439 5-236 (252)
209 PRK14256 phosphate ABC transpo 100.0 1.1E-38 2.4E-43 364.6 24.5 218 1213-1439 2-236 (252)
210 PRK14262 phosphate ABC transpo 100.0 9.2E-39 2E-43 364.9 23.8 217 1215-1440 3-235 (250)
211 PRK14268 phosphate ABC transpo 100.0 7.9E-39 1.7E-43 366.7 23.2 216 1215-1439 12-242 (258)
212 TIGR03411 urea_trans_UrtD urea 100.0 8.2E-39 1.8E-43 363.6 23.1 211 1216-1439 3-231 (242)
213 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-38 2.2E-43 361.2 23.8 211 1216-1440 2-222 (236)
214 cd03264 ABC_drug_resistance_li 100.0 6.5E-39 1.4E-43 356.7 21.8 202 1216-1432 1-211 (211)
215 cd03224 ABC_TM1139_LivF_branch 100.0 7.5E-39 1.6E-43 359.2 22.0 212 1216-1439 1-221 (222)
216 PRK14274 phosphate ABC transpo 100.0 2E-38 4.3E-43 363.8 26.0 216 1215-1439 12-243 (259)
217 PRK11831 putative ABC transpor 100.0 1.4E-38 3.1E-43 366.5 24.8 221 1215-1448 7-243 (269)
218 PRK10851 sulfate/thiosulfate t 100.0 1.1E-38 2.5E-43 378.0 24.4 210 1215-1439 2-226 (353)
219 cd03226 ABC_cobalt_CbiO_domain 100.0 7E-39 1.5E-43 354.7 21.1 198 1217-1429 1-205 (205)
220 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.5E-38 5.5E-43 358.7 26.2 217 595-812 1-231 (238)
221 PRK14240 phosphate transporter 100.0 1.7E-38 3.6E-43 362.7 24.9 217 1214-1439 2-234 (250)
222 PRK13634 cbiO cobalt transport 100.0 1E-38 2.3E-43 371.0 23.5 216 1215-1440 2-236 (290)
223 cd03290 ABCC_SUR1_N The SUR do 100.0 1.1E-38 2.5E-43 356.5 22.9 211 1216-1427 1-218 (218)
224 PRK14266 phosphate ABC transpo 100.0 1.2E-38 2.6E-43 364.0 23.5 221 1215-1444 3-240 (250)
225 PRK14249 phosphate ABC transpo 100.0 1.7E-38 3.6E-43 362.9 24.7 216 1215-1439 4-235 (251)
226 PRK13648 cbiO cobalt transport 100.0 1.2E-38 2.6E-43 367.4 23.5 216 1215-1441 7-233 (269)
227 PRK09536 btuD corrinoid ABC tr 100.0 1.1E-38 2.5E-43 381.3 24.1 213 1215-1440 3-229 (402)
228 PRK14248 phosphate ABC transpo 100.0 1.6E-38 3.5E-43 366.2 24.5 216 1215-1439 21-252 (268)
229 PRK13633 cobalt transporter AT 100.0 1.6E-38 3.4E-43 368.1 24.3 216 1215-1441 4-235 (280)
230 COG1122 CbiO ABC-type cobalt t 100.0 8.9E-39 1.9E-43 354.2 21.0 202 594-808 3-229 (235)
231 COG4615 PvdE ABC-type sideroph 100.0 6.6E-36 1.4E-40 332.8 43.7 505 269-799 5-529 (546)
232 cd03288 ABCC_SUR2 The SUR doma 100.0 4.8E-38 1E-42 359.9 27.7 223 592-816 17-253 (257)
233 TIGR03005 ectoine_ehuA ectoine 100.0 1.6E-38 3.5E-43 363.2 23.8 211 1216-1439 1-236 (252)
234 PRK11022 dppD dipeptide transp 100.0 1.8E-38 3.8E-43 373.5 24.7 224 1215-1446 3-251 (326)
235 cd03218 ABC_YhbG The ABC trans 100.0 9.3E-39 2E-43 360.8 21.5 211 1216-1439 1-222 (232)
236 cd03225 ABC_cobalt_CbiO_domain 100.0 6.6E-39 1.4E-43 356.7 19.9 200 1217-1427 1-211 (211)
237 PRK13537 nodulation ABC transp 100.0 1.1E-38 2.4E-43 372.7 22.5 213 1214-1440 6-228 (306)
238 PRK13644 cbiO cobalt transport 100.0 1.9E-38 4.2E-43 366.0 24.3 212 1216-1439 2-224 (274)
239 PRK14260 phosphate ABC transpo 100.0 1.7E-38 3.6E-43 364.3 23.6 217 1214-1439 6-243 (259)
240 PRK14236 phosphate transporter 100.0 1.9E-38 4.1E-43 366.1 24.1 219 1213-1440 23-257 (272)
241 cd03254 ABCC_Glucan_exporter_l 100.0 3.7E-38 8E-43 355.2 25.9 212 594-808 2-227 (229)
242 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-38 3.3E-43 377.3 23.8 217 1213-1444 3-234 (362)
243 PRK14238 phosphate transporter 100.0 3.3E-38 7.2E-43 363.7 25.9 218 1213-1439 22-255 (271)
244 cd03253 ABCC_ATM1_transporter 100.0 5.1E-38 1.1E-42 355.8 27.0 217 595-814 1-231 (236)
245 cd03268 ABC_BcrA_bacitracin_re 100.0 1.1E-38 2.5E-43 353.9 21.2 202 1216-1432 1-208 (208)
246 PRK10575 iron-hydroxamate tran 100.0 1.5E-38 3.4E-43 365.6 22.7 212 1215-1439 11-237 (265)
247 TIGR02211 LolD_lipo_ex lipopro 100.0 2E-38 4.3E-43 355.4 23.1 203 1216-1429 2-220 (221)
248 TIGR02673 FtsE cell division A 100.0 7.6E-39 1.7E-43 357.0 19.6 200 1216-1427 2-214 (214)
249 cd03246 ABCC_Protease_Secretio 100.0 1.4E-38 3.1E-43 342.2 20.9 172 1216-1428 1-173 (173)
250 cd03301 ABC_MalK_N The N-termi 100.0 9.3E-39 2E-43 356.0 20.1 202 1216-1432 1-213 (213)
251 PRK14254 phosphate ABC transpo 100.0 3.4E-38 7.4E-43 365.5 25.5 217 1214-1439 38-269 (285)
252 TIGR02769 nickel_nikE nickel i 100.0 2.6E-38 5.7E-43 363.7 24.4 220 1216-1445 3-246 (265)
253 TIGR03410 urea_trans_UrtE urea 100.0 2E-38 4.3E-43 357.6 22.9 210 1216-1437 1-219 (230)
254 cd03251 ABCC_MsbA MsbA is an e 100.0 5.4E-38 1.2E-42 355.1 26.4 216 595-812 1-230 (234)
255 PRK11000 maltose/maltodextrin 100.0 1.7E-38 3.6E-43 379.6 23.3 215 1215-1444 3-229 (369)
256 PRK09452 potA putrescine/sperm 100.0 2.4E-38 5.3E-43 376.7 24.6 216 1214-1444 13-240 (375)
257 COG3842 PotA ABC-type spermidi 100.0 8E-39 1.7E-43 368.6 19.8 215 1214-1444 4-232 (352)
258 PRK13641 cbiO cobalt transport 100.0 2.7E-38 5.9E-43 367.2 24.3 214 1215-1439 2-234 (287)
259 PRK11264 putative amino-acid A 100.0 3.1E-38 6.6E-43 360.7 24.2 211 1216-1439 4-233 (250)
260 COG3638 ABC-type phosphate/pho 100.0 1.1E-38 2.3E-43 337.7 18.8 200 594-806 3-236 (258)
261 PRK11614 livF leucine/isoleuci 100.0 2.3E-38 5E-43 358.7 23.0 212 1215-1439 5-226 (237)
262 PRK14252 phosphate ABC transpo 100.0 2.7E-38 5.9E-43 363.8 23.8 220 1211-1439 12-249 (265)
263 PRK11124 artP arginine transpo 100.0 2.4E-38 5.2E-43 359.6 23.1 212 1216-1440 3-231 (242)
264 PRK14270 phosphate ABC transpo 100.0 2.7E-38 5.9E-43 361.1 23.6 216 1215-1439 4-235 (251)
265 PRK09493 glnQ glutamine ABC tr 100.0 2.6E-38 5.6E-43 358.9 23.3 211 1216-1439 2-225 (240)
266 PRK14243 phosphate transporter 100.0 3.7E-38 8E-43 362.1 24.7 216 1215-1439 10-248 (264)
267 PRK13639 cbiO cobalt transport 100.0 2.7E-38 5.9E-43 365.2 23.8 213 1216-1440 2-227 (275)
268 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-38 4.2E-43 357.8 22.0 209 1216-1439 1-220 (232)
269 PRK10253 iron-enterobactin tra 100.0 2.2E-38 4.8E-43 364.3 22.9 213 1214-1439 6-233 (265)
270 PRK09473 oppD oligopeptide tra 100.0 2.9E-38 6.2E-43 372.0 23.9 224 1215-1446 12-259 (330)
271 PRK11231 fecE iron-dicitrate t 100.0 2.4E-38 5.3E-43 362.2 22.6 211 1216-1439 3-227 (255)
272 PRK14261 phosphate ABC transpo 100.0 4E-38 8.7E-43 360.2 24.2 216 1215-1439 6-237 (253)
273 PRK11247 ssuB aliphatic sulfon 100.0 3.6E-38 7.8E-43 359.2 23.6 203 1215-1435 12-219 (257)
274 cd03292 ABC_FtsE_transporter F 100.0 1.6E-38 3.5E-43 354.4 20.3 201 1216-1428 1-214 (214)
275 PRK13638 cbiO cobalt transport 100.0 2.8E-38 6E-43 364.7 22.8 213 1216-1441 2-227 (271)
276 PRK14271 phosphate ABC transpo 100.0 5.9E-38 1.3E-42 362.1 25.2 217 1215-1440 21-252 (276)
277 PRK10070 glycine betaine trans 100.0 2.8E-38 6.1E-43 377.7 23.2 198 1231-1439 42-254 (400)
278 PRK13649 cbiO cobalt transport 100.0 3.6E-38 7.7E-43 365.8 23.4 215 1216-1440 3-235 (280)
279 cd03244 ABCC_MRP_domain2 Domai 100.0 9.1E-38 2E-42 350.1 25.8 206 594-801 2-220 (221)
280 TIGR00968 3a0106s01 sulfate AB 100.0 3.6E-38 7.7E-43 356.7 22.5 209 1216-1439 1-220 (237)
281 cd03293 ABC_NrtD_SsuB_transpor 100.0 2E-38 4.3E-43 355.1 20.1 203 1216-1434 1-218 (220)
282 PRK14263 phosphate ABC transpo 100.0 5.9E-38 1.3E-42 359.4 24.3 216 1215-1439 8-245 (261)
283 PRK14258 phosphate ABC transpo 100.0 5.2E-38 1.1E-42 360.4 23.7 217 1214-1439 6-245 (261)
284 PRK14265 phosphate ABC transpo 100.0 7.3E-38 1.6E-42 361.2 25.0 217 1214-1439 19-258 (274)
285 PRK14253 phosphate ABC transpo 100.0 5.4E-38 1.2E-42 358.3 23.7 216 1215-1439 3-233 (249)
286 PRK13645 cbiO cobalt transport 100.0 4E-38 8.6E-43 366.7 22.9 216 1213-1439 4-240 (289)
287 cd03235 ABC_Metallic_Cations A 100.0 1.9E-38 4.2E-43 353.4 19.4 197 1217-1432 1-213 (213)
288 COG2884 FtsE Predicted ATPase 100.0 2.5E-38 5.4E-43 322.9 18.4 193 595-800 2-219 (223)
289 TIGR02314 ABC_MetN D-methionin 100.0 3.7E-38 7.9E-43 370.9 22.7 203 595-808 2-231 (343)
290 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.9E-38 1.1E-42 349.6 22.2 200 1216-1432 1-211 (211)
291 cd03299 ABC_ModC_like Archeal 100.0 4.7E-38 1E-42 355.3 22.2 208 1216-1439 1-219 (235)
292 PRK10584 putative ABC transpor 100.0 7.1E-38 1.5E-42 352.6 23.5 206 1215-1431 6-227 (228)
293 PRK14241 phosphate transporter 100.0 5.4E-38 1.2E-42 360.0 22.9 216 1215-1439 4-242 (258)
294 PRK11650 ugpC glycerol-3-phosp 100.0 7.1E-38 1.5E-42 371.6 24.6 203 594-809 3-226 (356)
295 PRK13548 hmuV hemin importer A 100.0 1E-37 2.2E-42 357.2 24.9 211 1216-1439 3-230 (258)
296 PRK14264 phosphate ABC transpo 100.0 8E-38 1.7E-42 365.9 24.2 218 1213-1439 43-289 (305)
297 COG1124 DppF ABC-type dipeptid 100.0 8.1E-38 1.8E-42 334.3 22.0 205 594-808 3-232 (252)
298 PRK10908 cell division protein 100.0 1E-37 2.2E-42 349.9 24.0 203 1216-1430 2-217 (222)
299 PRK11300 livG leucine/isoleuci 100.0 6.9E-38 1.5E-42 358.9 23.1 212 1215-1439 5-243 (255)
300 cd03257 ABC_NikE_OppD_transpor 100.0 8.5E-38 1.8E-42 352.2 23.4 207 1216-1432 2-228 (228)
301 PRK14272 phosphate ABC transpo 100.0 7.1E-38 1.5E-42 358.1 23.1 221 1215-1444 4-242 (252)
302 PRK10895 lipopolysaccharide AB 100.0 8.6E-38 1.9E-42 354.9 23.5 212 1215-1439 3-226 (241)
303 PRK13631 cbiO cobalt transport 100.0 1.1E-37 2.3E-42 365.7 25.0 207 592-808 19-266 (320)
304 PRK15112 antimicrobial peptide 100.0 6.3E-38 1.4E-42 360.8 22.6 224 1215-1449 4-251 (267)
305 TIGR01288 nodI ATP-binding ABC 100.0 6.6E-38 1.4E-42 366.8 23.1 212 1215-1440 4-225 (303)
306 PRK11607 potG putrescine trans 100.0 6.9E-38 1.5E-42 373.6 23.7 216 1214-1444 18-245 (377)
307 PRK14255 phosphate ABC transpo 100.0 8.3E-38 1.8E-42 357.4 23.4 216 1215-1439 5-236 (252)
308 PRK14275 phosphate ABC transpo 100.0 1.1E-37 2.3E-42 361.8 24.5 218 1213-1439 37-270 (286)
309 PRK10247 putative ABC transpor 100.0 6.7E-38 1.5E-42 351.6 21.9 209 1215-1435 7-223 (225)
310 PRK10418 nikD nickel transport 100.0 1.2E-37 2.7E-42 356.1 24.0 222 1215-1449 4-242 (254)
311 TIGR03415 ABC_choXWV_ATP choli 100.0 7.7E-38 1.7E-42 371.2 23.0 199 1230-1439 37-254 (382)
312 PRK13536 nodulation factor exp 100.0 7E-38 1.5E-42 369.4 22.1 211 1215-1439 41-261 (340)
313 TIGR03522 GldA_ABC_ATP gliding 100.0 9E-38 2E-42 365.1 22.7 210 1216-1439 3-221 (301)
314 PRK10771 thiQ thiamine transpo 100.0 1.9E-37 4.1E-42 349.9 24.6 208 1216-1440 2-220 (232)
315 cd03262 ABC_HisP_GlnQ_permease 100.0 5.4E-38 1.2E-42 349.9 19.9 200 1216-1428 1-213 (213)
316 PRK14246 phosphate ABC transpo 100.0 1.6E-37 3.4E-42 355.0 24.1 222 1215-1445 10-248 (257)
317 TIGR01277 thiQ thiamine ABC tr 100.0 9.5E-38 2.1E-42 347.6 21.7 201 1216-1433 1-212 (213)
318 cd03245 ABCC_bacteriocin_expor 100.0 2.9E-37 6.3E-42 345.8 25.6 205 594-800 2-220 (220)
319 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-37 2.4E-42 357.1 22.6 211 1216-1439 2-226 (256)
320 PRK15093 antimicrobial peptide 100.0 1.7E-37 3.7E-42 366.5 24.8 224 1215-1446 3-256 (330)
321 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-37 2.9E-42 352.0 22.8 200 595-808 1-227 (235)
322 cd03269 ABC_putative_ATPase Th 100.0 6.3E-38 1.4E-42 348.5 19.3 200 1216-1432 1-210 (210)
323 PRK11701 phnK phosphonate C-P 100.0 2.4E-37 5.3E-42 354.6 24.8 219 1215-1445 6-248 (258)
324 PRK13547 hmuV hemin importer A 100.0 1.9E-37 4.2E-42 356.2 24.0 211 1216-1439 2-244 (272)
325 PRK11432 fbpC ferric transport 100.0 2.4E-37 5.2E-42 366.0 24.3 202 594-809 6-228 (351)
326 PRK09984 phosphonate/organopho 100.0 3.2E-37 7E-42 354.4 23.8 210 1215-1437 4-240 (262)
327 COG1131 CcmA ABC-type multidru 100.0 1.5E-37 3.3E-42 359.5 21.0 212 1215-1439 4-226 (293)
328 PRK13650 cbiO cobalt transport 100.0 3.3E-37 7.2E-42 356.7 23.5 204 594-808 4-230 (279)
329 PRK13643 cbiO cobalt transport 100.0 3.6E-37 7.8E-42 357.8 23.7 204 595-808 2-234 (288)
330 TIGR01978 sufC FeS assembly AT 100.0 2.2E-37 4.8E-42 352.2 21.6 213 1216-1439 1-234 (243)
331 PRK13634 cbiO cobalt transport 100.0 4E-37 8.7E-42 357.7 23.7 204 595-808 3-236 (290)
332 TIGR01188 drrA daunorubicin re 100.0 2E-37 4.4E-42 362.5 21.3 199 1230-1440 6-214 (302)
333 TIGR01186 proV glycine betaine 100.0 1.8E-37 3.9E-42 366.8 20.8 189 610-809 6-221 (363)
334 TIGR03265 PhnT2 putative 2-ami 100.0 3.4E-37 7.3E-42 365.5 23.0 202 594-809 4-226 (353)
335 PRK11144 modC molybdate transp 100.0 4.5E-37 9.7E-42 365.8 23.9 208 1216-1439 2-218 (352)
336 PRK13637 cbiO cobalt transport 100.0 4.7E-37 1E-41 356.6 23.3 206 594-808 2-235 (287)
337 PRK09452 potA putrescine/sperm 100.0 6.2E-37 1.3E-41 364.7 24.5 203 593-809 13-236 (375)
338 cd03296 ABC_CysA_sulfate_impor 100.0 7.7E-37 1.7E-41 346.5 24.0 199 595-807 3-226 (239)
339 TIGR03740 galliderm_ABC gallid 100.0 7.4E-37 1.6E-41 343.1 23.3 204 1216-1436 1-210 (223)
340 cd03228 ABCC_MRP_Like The MRP 100.0 4.4E-37 9.5E-42 330.0 20.6 171 1216-1427 1-171 (171)
341 TIGR03258 PhnT 2-aminoethylpho 100.0 5.4E-37 1.2E-41 364.0 22.8 203 593-809 4-230 (362)
342 PRK00349 uvrA excinuclease ABC 100.0 2.3E-36 5E-41 390.4 30.5 107 1341-1447 818-936 (943)
343 PRK10419 nikE nickel transport 100.0 1E-36 2.3E-41 350.6 24.3 222 1215-1446 3-248 (268)
344 PRK10851 sulfate/thiosulfate t 100.0 9.3E-37 2E-41 361.7 24.2 202 594-809 2-228 (353)
345 PRK13646 cbiO cobalt transport 100.0 7.9E-37 1.7E-41 354.8 23.2 205 594-808 2-236 (286)
346 PRK13651 cobalt transporter AT 100.0 1E-36 2.2E-41 355.4 24.1 204 595-808 3-255 (305)
347 TIGR02982 heterocyst_DevA ABC 100.0 3.8E-37 8.3E-42 344.5 19.8 202 1216-1428 2-219 (220)
348 COG0410 LivF ABC-type branched 100.0 5.5E-37 1.2E-41 325.9 19.8 214 1216-1441 4-228 (237)
349 cd03219 ABC_Mj1267_LivG_branch 100.0 7.1E-37 1.5E-41 346.4 22.0 199 595-807 1-232 (236)
350 cd03290 ABCC_SUR1_N The SUR do 100.0 1.5E-36 3.2E-41 339.5 24.1 198 596-795 2-218 (218)
351 PRK13647 cbiO cobalt transport 100.0 1E-36 2.3E-41 351.6 23.1 199 594-805 4-225 (274)
352 cd03260 ABC_PstB_phosphate_tra 100.0 8.3E-37 1.8E-41 343.7 21.7 197 595-804 1-226 (227)
353 COG0444 DppD ABC-type dipeptid 100.0 8.4E-37 1.8E-41 341.3 21.4 223 1216-1449 2-255 (316)
354 PRK11248 tauB taurine transpor 100.0 8.2E-37 1.8E-41 348.7 21.9 201 1216-1434 2-215 (255)
355 PRK11000 maltose/maltodextrin 100.0 1.1E-36 2.3E-41 364.1 23.7 201 594-808 3-224 (369)
356 cd03259 ABC_Carb_Solutes_like 100.0 8.3E-37 1.8E-41 340.3 21.1 192 595-800 1-213 (213)
357 cd03217 ABC_FeS_Assembly ABC-t 100.0 1E-36 2.2E-41 335.6 21.5 186 1216-1439 1-193 (200)
358 COG1118 CysA ABC-type sulfate/ 100.0 4.6E-37 9.9E-42 335.9 18.4 214 1215-1444 2-233 (345)
359 cd03230 ABC_DR_subfamily_A Thi 100.0 8.2E-37 1.8E-41 328.5 19.8 170 1216-1428 1-173 (173)
360 cd03229 ABC_Class3 This class 100.0 9E-37 2E-41 329.8 20.2 172 1216-1427 1-178 (178)
361 TIGR00960 3a0501s02 Type II (G 100.0 8.6E-37 1.9E-41 340.9 20.6 190 595-796 2-216 (216)
362 PRK11153 metN DL-methionine tr 100.0 1.4E-36 3E-41 360.3 23.5 203 595-808 2-231 (343)
363 cd03226 ABC_cobalt_CbiO_domain 100.0 1.2E-36 2.6E-41 336.8 21.4 189 596-797 1-205 (205)
364 TIGR02323 CP_lyasePhnK phospho 100.0 2.6E-36 5.7E-41 345.3 24.9 220 1215-1446 3-246 (253)
365 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.2E-36 2.6E-41 340.6 21.6 197 595-802 1-218 (220)
366 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-36 2.6E-41 340.6 21.5 197 595-805 1-219 (220)
367 COG4178 ABC-type uncharacteriz 100.0 2.3E-33 5E-38 339.5 51.3 439 339-792 107-587 (604)
368 PRK13537 nodulation ABC transp 100.0 1.7E-36 3.7E-41 354.3 23.4 202 593-808 6-228 (306)
369 PRK14250 phosphate ABC transpo 100.0 2.9E-36 6.3E-41 342.0 24.4 202 594-808 3-222 (241)
370 PRK13635 cbiO cobalt transport 100.0 3E-36 6.6E-41 348.4 24.7 203 594-808 5-230 (279)
371 TIGR02315 ABC_phnC phosphonate 100.0 2.2E-36 4.8E-41 343.9 23.1 198 595-805 2-233 (243)
372 cd03248 ABCC_TAP TAP, the Tran 100.0 3.2E-36 6.9E-41 338.8 23.9 204 592-796 9-226 (226)
373 cd03256 ABC_PhnC_transporter A 100.0 2.1E-36 4.5E-41 343.8 22.6 199 595-806 1-233 (241)
374 PRK15056 manganese/iron transp 100.0 2.2E-36 4.7E-41 349.0 23.0 209 1215-1439 6-230 (272)
375 cd03268 ABC_BcrA_bacitracin_re 100.0 2.7E-36 5.8E-41 334.9 22.7 192 595-800 1-208 (208)
376 COG4555 NatA ABC-type Na+ tran 100.0 5.9E-37 1.3E-41 315.2 16.0 211 1216-1439 2-222 (245)
377 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.9E-36 1.1E-40 332.5 24.7 189 593-801 5-206 (207)
378 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.6E-36 3.5E-41 339.3 20.8 191 595-796 1-218 (218)
379 PRK13644 cbiO cobalt transport 100.0 3.4E-36 7.3E-41 347.3 24.1 201 595-808 2-225 (274)
380 cd03224 ABC_TM1139_LivF_branch 100.0 2.7E-36 5.8E-41 338.5 22.7 198 595-806 1-220 (222)
381 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-36 3.6E-41 334.3 20.4 190 1215-1432 3-202 (202)
382 PRK14269 phosphate ABC transpo 100.0 2.6E-36 5.6E-41 343.7 22.6 204 594-808 2-231 (246)
383 TIGR02142 modC_ABC molybdenum 100.0 2.2E-36 4.7E-41 360.6 22.7 205 1220-1439 4-221 (354)
384 PRK11629 lolD lipoprotein tran 100.0 3.4E-36 7.3E-41 340.0 22.8 197 594-801 5-228 (233)
385 PRK14242 phosphate transporter 100.0 3.1E-36 6.8E-41 344.7 22.8 205 593-808 5-238 (253)
386 COG1245 Predicted ATPase, RNas 100.0 1.5E-35 3.2E-40 335.9 27.8 176 1239-1439 363-547 (591)
387 PRK11607 potG putrescine trans 100.0 3.5E-36 7.6E-41 359.0 24.1 204 592-809 17-241 (377)
388 PRK13636 cbiO cobalt transport 100.0 3.8E-36 8.2E-41 348.6 23.7 202 594-808 5-232 (283)
389 PRK13641 cbiO cobalt transport 100.0 3.9E-36 8.5E-41 349.1 23.7 204 594-807 2-234 (287)
390 PRK09536 btuD corrinoid ABC tr 100.0 3.2E-36 7E-41 360.2 23.5 201 594-808 3-229 (402)
391 PRK09544 znuC high-affinity zi 100.0 4.2E-36 9.2E-41 341.6 23.2 208 1215-1448 4-217 (251)
392 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.6E-36 1E-40 339.5 23.5 200 595-808 2-222 (236)
393 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-36 3.1E-41 329.4 18.5 172 1215-1428 4-182 (182)
394 PRK14273 phosphate ABC transpo 100.0 5E-36 1.1E-40 343.1 23.9 205 593-808 6-239 (254)
395 PRK11247 ssuB aliphatic sulfon 100.0 5.8E-36 1.3E-40 341.1 24.3 197 593-803 11-219 (257)
396 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-36 4.1E-41 331.6 19.4 182 1215-1432 3-194 (194)
397 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.3E-36 4.9E-41 348.0 21.0 199 596-808 26-251 (269)
398 cd03266 ABC_NatA_sodium_export 100.0 3.7E-36 8E-41 336.3 22.0 195 595-800 2-218 (218)
399 cd03258 ABC_MetN_methionine_tr 100.0 4.1E-36 8.9E-41 339.4 22.6 202 595-807 2-230 (233)
400 cd03235 ABC_Metallic_Cations A 100.0 3.2E-36 6.9E-41 335.6 21.3 190 596-800 1-213 (213)
401 cd03263 ABC_subfamily_A The AB 100.0 4.7E-36 1E-40 336.0 22.7 198 595-805 1-219 (220)
402 cd03218 ABC_YhbG The ABC trans 100.0 4.2E-36 9.1E-41 339.2 22.4 199 595-807 1-222 (232)
403 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-36 5.3E-41 327.0 19.6 177 1217-1432 1-180 (180)
404 TIGR00972 3a0107s01c2 phosphat 100.0 6.4E-36 1.4E-40 340.7 23.9 203 595-808 2-233 (247)
405 cd03234 ABCG_White The White s 100.0 3.5E-36 7.6E-41 338.2 21.2 203 1216-1432 4-226 (226)
406 cd03301 ABC_MalK_N The N-termi 100.0 3.7E-36 8.1E-41 335.1 21.2 192 595-800 1-213 (213)
407 TIGR01288 nodI ATP-binding ABC 100.0 6.4E-36 1.4E-40 350.1 24.1 202 593-808 3-225 (303)
408 CHL00131 ycf16 sulfate ABC tra 100.0 5.4E-36 1.2E-40 342.6 22.9 212 1215-1437 7-239 (252)
409 PRK13642 cbiO cobalt transport 100.0 7.5E-36 1.6E-40 345.2 24.3 204 594-808 4-230 (277)
410 cd03232 ABC_PDR_domain2 The pl 100.0 5E-36 1.1E-40 327.9 21.4 181 1215-1432 3-192 (192)
411 cd03223 ABCD_peroxisomal_ALDP 100.0 3.9E-36 8.5E-41 320.6 20.0 164 1216-1427 1-164 (166)
412 PRK13536 nodulation factor exp 100.0 5.3E-36 1.2E-40 353.5 23.0 202 593-808 40-262 (340)
413 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.4E-36 9.5E-41 341.0 21.5 203 595-808 1-226 (242)
414 TIGR03608 L_ocin_972_ABC putat 100.0 2.4E-36 5.2E-41 334.9 18.8 193 1218-1423 1-206 (206)
415 PRK13649 cbiO cobalt transport 100.0 6.7E-36 1.4E-40 346.8 23.3 205 594-808 2-235 (280)
416 PRK10744 pstB phosphate transp 100.0 8.4E-36 1.8E-40 342.1 23.8 206 592-808 11-245 (260)
417 PRK13632 cbiO cobalt transport 100.0 8.4E-36 1.8E-40 343.9 23.8 204 593-808 6-232 (271)
418 PRK09493 glnQ glutamine ABC tr 100.0 9.4E-36 2E-40 338.0 23.4 200 595-808 2-226 (240)
419 cd03297 ABC_ModC_molybdenum_tr 100.0 4.2E-36 9.1E-41 334.8 20.2 200 1216-1432 2-214 (214)
420 PRK13640 cbiO cobalt transport 100.0 9E-36 1.9E-40 345.3 23.7 204 593-808 4-233 (282)
421 PRK13633 cobalt transporter AT 100.0 1.2E-35 2.6E-40 344.1 24.5 204 594-808 4-234 (280)
422 PRK13645 cbiO cobalt transport 100.0 8.4E-36 1.8E-40 347.2 23.3 206 593-808 5-241 (289)
423 TIGR02211 LolD_lipo_ex lipopro 100.0 7.8E-36 1.7E-40 334.5 22.1 192 595-797 2-220 (221)
424 cd03269 ABC_putative_ATPase Th 100.0 7.3E-36 1.6E-40 331.9 21.4 192 595-800 1-210 (210)
425 TIGR02770 nickel_nikD nickel i 100.0 5.4E-36 1.2E-40 337.5 20.5 204 1232-1445 1-222 (230)
426 COG1131 CcmA ABC-type multidru 100.0 1.1E-35 2.4E-40 344.0 23.5 202 594-808 4-227 (293)
427 PRK10619 histidine/lysine/argi 100.0 1.1E-35 2.3E-40 340.8 23.0 203 593-808 4-242 (257)
428 PRK11831 putative ABC transpor 100.0 1.1E-35 2.5E-40 342.5 22.7 202 593-808 6-234 (269)
429 COG1137 YhbG ABC-type (unclass 100.0 5.5E-37 1.2E-41 315.0 10.3 214 1214-1440 3-229 (243)
430 COG4619 ABC-type uncharacteriz 100.0 3.1E-36 6.8E-41 300.2 15.3 198 1224-1431 10-215 (223)
431 PRK13648 cbiO cobalt transport 100.0 1.7E-35 3.8E-40 341.1 24.0 203 594-808 7-232 (269)
432 TIGR03415 ABC_choXWV_ATP choli 100.0 9.5E-36 2.1E-40 353.4 22.4 188 610-808 37-255 (382)
433 PRK11614 livF leucine/isoleuci 100.0 2.3E-35 4.9E-40 334.2 24.6 200 594-807 5-226 (237)
434 COG1123 ATPase components of v 100.0 1.2E-35 2.6E-40 355.0 23.3 222 1215-1445 5-251 (539)
435 PRK11231 fecE iron-dicitrate t 100.0 1.8E-35 3.9E-40 338.5 23.9 199 595-807 3-227 (255)
436 PRK00635 excinuclease ABC subu 100.0 1.2E-34 2.5E-39 387.1 35.1 209 1215-1441 600-908 (1809)
437 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-35 3E-40 334.5 22.4 198 595-805 1-219 (230)
438 PRK14235 phosphate transporter 100.0 1.8E-35 3.9E-40 340.4 23.7 206 591-807 16-251 (267)
439 PRK11264 putative amino-acid A 100.0 1.2E-35 2.6E-40 339.3 22.2 201 594-808 3-234 (250)
440 PRK15079 oligopeptide ABC tran 100.0 1.6E-35 3.5E-40 348.4 23.7 207 593-809 7-253 (331)
441 PRK13652 cbiO cobalt transport 100.0 2.5E-35 5.3E-40 340.9 24.6 202 594-808 3-228 (277)
442 PRK10070 glycine betaine trans 100.0 1.1E-35 2.5E-40 355.3 22.3 188 611-809 42-256 (400)
443 PRK10247 putative ABC transpor 100.0 1.4E-35 3E-40 332.9 21.7 198 593-803 6-223 (225)
444 PRK13639 cbiO cobalt transport 100.0 1.7E-35 3.6E-40 342.0 23.0 201 595-808 2-227 (275)
445 TIGR02769 nickel_nikE nickel i 100.0 2.2E-35 4.8E-40 339.5 23.9 206 594-809 2-242 (265)
446 cd03264 ABC_drug_resistance_li 100.0 1.5E-35 3.3E-40 329.7 21.7 190 595-800 1-211 (211)
447 PRK11300 livG leucine/isoleuci 100.0 2.2E-35 4.7E-40 338.2 23.7 200 594-807 5-243 (255)
448 PRK13638 cbiO cobalt transport 100.0 2.1E-35 4.5E-40 340.8 23.6 200 595-808 2-226 (271)
449 PRK03695 vitamin B12-transport 100.0 1.5E-35 3.2E-40 337.4 22.1 206 1216-1439 1-222 (248)
450 cd03298 ABC_ThiQ_thiamine_tran 100.0 2E-35 4.4E-40 328.6 22.6 190 595-800 1-211 (211)
451 PRK14259 phosphate ABC transpo 100.0 2.6E-35 5.6E-40 339.3 24.1 205 593-808 12-254 (269)
452 cd03292 ABC_FtsE_transporter F 100.0 1.2E-35 2.5E-40 331.4 20.6 189 595-796 1-214 (214)
453 PRK10895 lipopolysaccharide AB 100.0 2.4E-35 5.2E-40 334.9 23.5 200 594-807 3-226 (241)
454 PRK13548 hmuV hemin importer A 100.0 3.7E-35 8E-40 336.1 25.1 199 595-807 3-230 (258)
455 PRK09580 sufC cysteine desulfu 100.0 1.7E-35 3.7E-40 337.7 22.3 211 1216-1437 2-233 (248)
456 PRK10575 iron-hydroxamate tran 100.0 2.3E-35 4.9E-40 339.4 23.4 201 593-807 10-237 (265)
457 cd03247 ABCC_cytochrome_bd The 100.0 2.1E-35 4.5E-40 319.3 21.7 166 595-800 1-178 (178)
458 PRK10584 putative ABC transpor 100.0 2.2E-35 4.8E-40 332.4 22.8 195 594-799 6-227 (228)
459 TIGR02673 FtsE cell division A 100.0 1.2E-35 2.5E-40 331.4 20.2 188 595-795 2-214 (214)
460 TIGR03411 urea_trans_UrtD urea 100.0 2.4E-35 5.1E-40 335.2 23.1 199 594-807 2-231 (242)
461 PRK14245 phosphate ABC transpo 100.0 1.6E-35 3.4E-40 338.1 21.6 204 594-808 3-235 (250)
462 cd03225 ABC_cobalt_CbiO_domain 100.0 1.4E-35 2.9E-40 330.1 20.5 188 596-795 1-211 (211)
463 PRK14237 phosphate transporter 100.0 2.8E-35 6.1E-40 338.8 23.8 207 591-808 17-252 (267)
464 PRK14274 phosphate ABC transpo 100.0 2.8E-35 6.1E-40 337.8 23.7 205 593-808 11-244 (259)
465 PRK14268 phosphate ABC transpo 100.0 2E-35 4.4E-40 338.6 22.4 205 593-808 11-243 (258)
466 KOG0066 eIF2-interacting prote 100.0 6.5E-35 1.4E-39 325.8 25.6 192 1215-1430 586-781 (807)
467 PRK11124 artP arginine transpo 100.0 3E-35 6.5E-40 334.3 23.5 199 594-806 2-229 (242)
468 COG4555 NatA ABC-type Na+ tran 100.0 8.9E-36 1.9E-40 306.5 17.0 201 595-808 2-223 (245)
469 TIGR00630 uvra excinuclease AB 100.0 2.8E-34 6.1E-39 370.4 35.2 216 1215-1437 612-923 (924)
470 PRK10253 iron-enterobactin tra 100.0 3.4E-35 7.4E-40 337.9 23.8 202 592-807 5-233 (265)
471 PRK14249 phosphate ABC transpo 100.0 3.6E-35 7.7E-40 335.4 23.7 204 594-808 4-236 (251)
472 PRK10771 thiQ thiamine transpo 100.0 7.4E-35 1.6E-39 328.8 25.9 198 595-808 2-220 (232)
473 cd03231 ABC_CcmA_heme_exporter 100.0 2.6E-35 5.7E-40 324.8 21.7 194 1216-1423 1-198 (201)
474 TIGR03005 ectoine_ehuA ectoine 100.0 2.9E-35 6.3E-40 336.4 22.8 200 595-808 1-237 (252)
475 PRK14248 phosphate ABC transpo 100.0 3.2E-35 7E-40 338.8 23.3 205 593-808 20-253 (268)
476 PRK14251 phosphate ABC transpo 100.0 2.3E-35 4.9E-40 337.1 21.8 204 594-808 4-236 (251)
477 PRK14270 phosphate ABC transpo 100.0 3.3E-35 7.2E-40 335.7 23.1 204 594-808 4-236 (251)
478 TIGR03873 F420-0_ABC_ATP propo 100.0 3.3E-35 7.3E-40 336.5 23.0 199 595-807 2-226 (256)
479 PRK14240 phosphate transporter 100.0 3.9E-35 8.5E-40 335.0 23.4 203 594-807 3-234 (250)
480 PRK14239 phosphate transporter 100.0 3.6E-35 7.8E-40 335.8 22.9 204 594-808 5-237 (252)
481 PRK14247 phosphate ABC transpo 100.0 4E-35 8.7E-40 334.9 23.0 204 594-808 3-235 (250)
482 cd03216 ABC_Carb_Monos_I This 100.0 3.7E-35 8E-40 312.1 21.2 159 1216-1430 1-162 (163)
483 PRK09984 phosphonate/organopho 100.0 6.2E-35 1.3E-39 335.5 24.5 198 594-805 4-240 (262)
484 TIGR03522 GldA_ABC_ATP gliding 100.0 3.8E-35 8.2E-40 343.0 22.9 200 594-808 2-222 (301)
485 cd03257 ABC_NikE_OppD_transpor 100.0 5.8E-35 1.3E-39 329.1 23.6 196 595-800 2-228 (228)
486 TIGR01188 drrA daunorubicin re 100.0 2.5E-35 5.4E-40 345.0 21.2 188 610-808 6-214 (302)
487 TIGR03740 galliderm_ABC gallid 100.0 4.5E-35 9.7E-40 328.7 22.4 196 595-804 1-210 (223)
488 cd03223 ABCD_peroxisomal_ALDP 100.0 4.2E-35 9.2E-40 312.6 20.9 162 595-795 1-164 (166)
489 COG4175 ProV ABC-type proline/ 100.0 2.1E-35 4.5E-40 322.4 18.7 188 612-810 43-257 (386)
490 TIGR01978 sufC FeS assembly AT 100.0 4.1E-35 8.8E-40 333.6 22.0 198 595-805 1-232 (243)
491 PRK10908 cell division protein 100.0 4.5E-35 9.7E-40 328.4 22.0 191 595-798 2-217 (222)
492 PRK14238 phosphate transporter 100.0 5.3E-35 1.1E-39 337.1 23.2 205 593-808 23-256 (271)
493 PRK14243 phosphate transporter 100.0 6.4E-35 1.4E-39 335.3 23.8 204 594-808 10-249 (264)
494 TIGR01184 ntrCD nitrate transp 100.0 2.2E-35 4.8E-40 332.3 19.6 190 1233-1438 1-203 (230)
495 PRK11248 tauB taurine transpor 100.0 5.8E-35 1.3E-39 333.5 23.1 194 595-802 2-215 (255)
496 COG0410 LivF ABC-type branched 100.0 4.2E-35 9.2E-40 311.5 20.2 208 594-809 3-228 (237)
497 PRK09544 znuC high-affinity zi 100.0 1.1E-34 2.4E-39 330.0 25.0 206 594-815 4-216 (251)
498 PRK11308 dppF dipeptide transp 100.0 7.9E-35 1.7E-39 342.5 24.4 206 594-809 5-246 (327)
499 PRK14236 phosphate transporter 100.0 6.3E-35 1.4E-39 336.8 23.0 206 592-808 23-257 (272)
500 PRK10762 D-ribose transporter 100.0 4.3E-35 9.3E-40 367.1 23.4 212 1215-1439 4-230 (501)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-267 Score=2540.36 Aligned_cols=1248 Identities=46% Similarity=0.756 Sum_probs=1156.7
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000481 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1467)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1467)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. ++.|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 344445555 99999999999999999999999999999999999999999999999886432 2568899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1467)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 354 (1467)
|++.+++.+++.++.+...+++|.+++.+++|.++++.+.+.|+.++++++++.++++++.++|++..+++|+|+|+++.
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999987766778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1467)
Q Consensus 355 ~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~ 434 (1467)
++||+|+|+++..+++++++|+|+|+|++|++++.+++.++|.+|++|+|+++++++||..+|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1467)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~ 514 (1467)
.+++++++++|++.|+.+|+|++.|+|+|+|||+||+|+||+.|.++|++.|++|++++|+..+..++..++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCc
Q 000481 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1467)
Q Consensus 515 ~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1467)
++++|++|++..++.+|++++|+++++|++|+.|+.++|+.++.+.|+.||++|+++||..+|.+++...+.+..+.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999964458899999999999999999999999999999999999999999999999987665443334445668
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCCCH
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti 674 (1467)
|+++|++|+|+++++.++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||||+||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHH
Q 000481 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1467)
Q Consensus 675 ~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1467)
||||+||.|+|+++|++++++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCC
Q 000481 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1467)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1467)
++|||++|+++.+++||+|+|||+++++++||+|++|+||+|.+.|+|+|+++.+..+.++..+...........+ .
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~-~-- 755 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEK-D-- 755 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccc-c--
Confidence 9999999999999999999999999999999999999999999999999999999888887432221111100000 0
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCcc-cccccccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 000481 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1467)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~ 913 (1467)
.+..+.. ...+.......+...+. ....+...++.++|+++.|.|+|++|+.|+++.+|+..+.+.+++.++.+
T Consensus 756 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 756 --LESGESS---RESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred --ccccccc---cchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0000000 00000000000000000 00111124566788889999999999999999788888887888888999
Q ss_pred HhhhhhhHHHHhhcccCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000481 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1467)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd 987 (1467)
++..+++||+++|++... .+..+|+++|++++++.+++.+++++.+...+.++|+++|++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 35678999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000481 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1467)
Q Consensus 988 ~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~ 1067 (1467)
+||+|||+||||+|++.+|..+|..+..++.+++.++++++++++++|+++++++|+.++++++++||++++||++|+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 000481 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1467)
Q Consensus 1068 ~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~ 1147 (1467)
.+|||+++||+||++|+.|||||+++++|.+++.+++|.+++++|...+++||+++|+|++++++++++++++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776655
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000481 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP 1227 (1467)
Q Consensus 1148 ~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~ 1227 (1467)
.+||.+|++++|++++++.++|++|+.+++|++|+||||+.||.++|+|+|+..+..+||++||++|+|+|+|+++||+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 78999999999999999999999999999999999999999999999997777766669999999999999999999999
Q ss_pred CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccch
Q 000481 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1467)
Q Consensus 1228 ~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTI 1307 (1467)
+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++|+||++++||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 000481 1308 RTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387 (1467)
Q Consensus 1308 R~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~T 1387 (1467)
|+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++||||||||||++|++|
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHHhc
Q 000481 1388 DAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWSSC 1455 (1467)
Q Consensus 1388 e~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~~~ 1455 (1467)
|..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|++ ++|.|++++.++...+
T Consensus 1311 D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~ 1379 (1381)
T KOG0054|consen 1311 DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSS 1379 (1381)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998 7899999998887654
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-214 Score=2170.13 Aligned_cols=1414 Identities=31% Similarity=0.519 Sum_probs=1165.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccC-Cc
Q 000481 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKND-SS 95 (1467)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~ 95 (1467)
.||||++++++|+|++|+|+++|.+++.. ++. +..++.++ .+.+....++........++..+. ....+.. ..
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLI-KKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHh-ccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 39999999999999999999999888743 331 22222222 222222222211111111111111 1100111 10
Q ss_pred chh-HH-HHHHHHHHHHHHHHHH---Hh--hccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhHhHHHH
Q 000481 96 MSW-LV-STVRGLIWVSLAISLL---VK--RSKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1467)
Q Consensus 96 ~~~-~~-~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1467)
... .. .....++|+.+.+++. .+ +.+...+.+++||++. +++.........+.... ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 111 11 2234455553332222 11 2233446678899887 33322222222222110 1224444444443
Q ss_pred HHHHH-hhcc-cCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 000481 166 LLFSA-FRNF-SHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1467)
Q Consensus 166 ~~~~~-~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~ 237 (1467)
+.+.. +... .+...+.. ..+..+++...+++++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 1111 11111110 0112344445567789999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 000481 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1467)
Q Consensus 238 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~ 317 (1467)
|+++.+.++|++.|+++.++ ++++++++++++|++.++..+++.++..++.+++|++++.+++++.+++. .+.+
T Consensus 267 ~~~~~~~~~~~~~w~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELKK-----PKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhcc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHH
Confidence 99999999999999876422 34789999999999999999999999999999999999999999865432 2446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHH
Q 000481 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1467)
Q Consensus 318 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~ 397 (1467)
+.++++++++.++.+++.+++++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++...+|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666777878889999999999999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 000481 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1467)
Q Consensus 398 ~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~ 477 (1467)
+|..|++++++++++|..+|+++++|++++++++|++..+++++++.+++.++.+|+|++.++|+++|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1467)
Q Consensus 478 f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~ 557 (1467)
|.+++++.|++|++..++..+...+..+++...|.++++++|+++.+.+ +.+|++.+|+++++++.+..|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888777777777767777777777777776664 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChH
Q 000481 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1467)
Q Consensus 558 ~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 637 (1467)
.+.++++|++||++|+..+|..+... .+.......|+++|++|+|++++++++|+|+||+|++|++++|+||+|||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999998765432111 0111123479999999999865456899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCC-cEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000481 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 638 TLl~~l~g~~~~~~-G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 716 (1467)
||+++|+|+++|.+ |+|.++++||||+|+||+|++||||||+||+++++++|++++++|+|++|++.||+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeE
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1467)
|.+|||||||||+||||+|++||||||||||||||++++++++++++++.+++||+|+|||+++.++.||+|++|++|+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999887889999999999999999999999999999
Q ss_pred eEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchH
Q 000481 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1467)
Q Consensus 797 ~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1467)
++.|+|+|+++.++.|.++...+.......+. ......++.+. ............. ..+..+........+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVEE---NGEEEDDQTSS--KPVANGNANNLKK-DSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhcccccccccc---ccccccccccc--ccccccccccccc-cccccccccccchhhhhH
Confidence 99999999999888888887653321100000 00000000000 0000000000000 000000000011234566
Q ss_pred HHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccC---ccchhHHHHHHHHHHHHHHHHHH
Q 000481 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP---KITSGILIGVYAGVSTASAVFVY 953 (1467)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~~~~~~~~y~~l~~~~~~~~~ 953 (1467)
|+++.|.++|++|+.|+++.++.+.+.+++++.+...++..++++|++.|.+.. ......++++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999866655555555556666777788999999998642 12345678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1467)
Q Consensus 954 ~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~ 1033 (1467)
++.++..+.+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Q 000481 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1467)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~ 1113 (1467)
+|..+++++|+.+++++++++|.+++|+++|++.++++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+.+..+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000481 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY-----VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1467)
Q Consensus 1114 ~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~ 1188 (1467)
....++|+++++++++.+++++.+.+.+.. .+. ..++.+|++++|++.++..+.++.+.+..+|+.++|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877666555443322 221 12688999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1189 ~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+|+
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99999988765434445667899999999999999999887789999999999999999999999999999999999999
Q ss_pred CCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1269 ~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|+|+||++++++++|.++|+||||+|+|
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||+|+||||++||++||||+|||+|+|
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRV 1450 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHhcc-CChhHHHHHHHHH
Q 000481 1429 LEYDEPSKLMET-NSSFSKLVAEYWS 1453 (1467)
Q Consensus 1429 vE~g~p~~Ll~~-~~~f~~lv~~~~~ 1453 (1467)
+|+|+|+||+++ +|.|++|+++...
T Consensus 1451 vE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1451 VEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred EEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 999999999995 7999999987664
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-209 Score=2128.83 Aligned_cols=1410 Identities=30% Similarity=0.507 Sum_probs=1154.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-ch
Q 000481 23 SFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS-MS 97 (1467)
Q Consensus 23 ~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~ 97 (1467)
|||||+++++|+|++|+|+++|.+++..+++++...+.++ .+.+....++........++..+. ...-+.... ..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLPP 109 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 8999999999999999999999888754322222233222 222222222222222211211111 110001100 01
Q ss_pred h-HH-HHHHHHHHHHHHHHH--H-Hh--hccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhHhHHHHHH
Q 000481 98 W-LV-STVRGLIWVSLAISL--L-VK--RSKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLLL 167 (1467)
Q Consensus 98 ~-~~-~~~~~~~~~~~~~~~--~-~~--~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1467)
. .. .....++|+.+.+++ . .+ +.+...+.+++||++. .++.............. ...++..+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 188 (1495)
T PLN03232 110 FEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTA-LYLCISSRCCQALFG 188 (1495)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHHHHHHHHhccc-cceehhHHHHHHHHH
Confidence 1 11 222344444322222 1 22 2233446678899887 33322222221221100 122444444443322
Q ss_pred HHH-hhcc-cCCCCCCCC-------CCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccC
Q 000481 168 FSA-FRNF-SHFTSPNRE-------DKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPED 238 (1467)
Q Consensus 168 ~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~ 238 (1467)
+.. +... .+.. +... ++..++..+.+.+++||+++|+|||+||||++|++++|||++|+.+|||+|+++|
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~ 267 (1495)
T PLN03232 189 ILLLVYIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWD 267 (1495)
T ss_pred HHHHHhcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhh
Confidence 222 1111 1111 1000 0000111112456789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Q 000481 239 EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGL 318 (1467)
Q Consensus 239 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~ 318 (1467)
+++.++++|++.|+++.+ .++++++++++++|++.++..+++.++.+++.+++|++++.+++++.+++. .+.++
T Consensus 268 ~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~ 341 (1495)
T PLN03232 268 QTETLIKRFQRCWTEESR-----RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGY 341 (1495)
T ss_pred hHHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHH
Confidence 999999999999987542 134789999999999999999999999999999999999999999865432 24567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHH
Q 000481 319 SIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398 (1467)
Q Consensus 319 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~ 398 (1467)
.++++++++.++.+++.+++++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++...+|.+
T Consensus 342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l 421 (1495)
T PLN03232 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGL 421 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888888888899999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHH
Q 000481 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1467)
Q Consensus 399 ~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f 478 (1467)
|..|++++++++++|..+|++++++++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||+.+
T Consensus 422 ~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~ 501 (1495)
T PLN03232 422 WSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSF 501 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999998888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 479 KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSI 558 (1467)
Q Consensus 479 ~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~ 558 (1467)
.+++++.|++|++..++......+..+++...|.++.+++|+++... ++.+|++.+|+++++++.+..|+..+|..+..
T Consensus 502 ~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~-~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~ 580 (1495)
T PLN03232 502 ESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLL-GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQ 580 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888777666666666666776666677666655 48899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHH
Q 000481 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSS 638 (1467)
Q Consensus 559 ~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKST 638 (1467)
+.++++|++||++|++.++...+.. .........|+++|++|+|++++++++|+|+||+|++||+++|+||+||||||
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKST 658 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTS 658 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHH
Confidence 9999999999999997665321111 11111234799999999998644568999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcE-EEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000481 639 LLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1467)
Q Consensus 639 Ll~~l~g~~~~~~G~-i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 717 (1467)
|+++|+|+++|.+|. +.++++||||+|+||+|++||||||+||+++++++|++++++|++++|++.+|+||+|+|||+|
T Consensus 659 Ll~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 659 LISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred HHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 999999999999975 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEe
Q 000481 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1467)
Q Consensus 718 ~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1467)
.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|+
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999988878899999999999999999999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHH
Q 000481 798 QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1467)
Q Consensus 798 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1467)
+.|+|+|+++.++.|.++.+.+........ +. ...+....... ..+. .. ..+.....+...+....+.++|
T Consensus 819 ~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~--~~---~~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~~~~e 889 (1495)
T PLN03232 819 EEGTFAELSKSGSLFKKLMENAGKMDATQE--VN---TNDENILKLGP-TVTI--DV-SERNLGSTKQGKRGRSVLVKQE 889 (1495)
T ss_pred EecCHHHHHhcchhHHHHHHhccccccccc--cc---ccccccccccc-cccc--cc-cccccccccccccchhhhhhHH
Confidence 999999999988888888765432110000 00 00000000000 0000 00 0000000000000112345678
Q ss_pred HhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccC---ccchhHHHHHHHHHHHHHHHHHHH
Q 000481 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP---KITSGILIGVYAGVSTASAVFVYF 954 (1467)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~~~~~~~~y~~l~~~~~~~~~~ 954 (1467)
+++.|.++|++|+.|+++.++++.+.+++++.+...++..++++|++.|.+.. .....+|+++|++++++..++.++
T Consensus 890 ~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~ 969 (1495)
T PLN03232 890 ERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFT 969 (1495)
T ss_pred HHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999877655555555555666677788999999998643 223567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1467)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1034 (1467)
+.++....+.++++++|++++++++++|++|||++|+|+++|||++|++.+|..++..+..++..++.+++.+++++..+
T Consensus 970 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 970 NSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1467)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1114 (1467)
+..+++++|+.+++++++.+|.+++|+++|.+..+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.+..+..
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1495)
T PLN03232 1050 TISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLAN 1129 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000481 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV-----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1467)
Q Consensus 1115 ~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~ 1189 (1467)
...++|+.++++.++.++++..+.+.+. ..+.+ .++.+|++++|+..++.++.++++.+.++++.++|+||+.+
T Consensus 1130 ~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e 1208 (1495)
T PLN03232 1130 TSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGN 1208 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988776555444433332 22222 25678889999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 000481 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1467)
Q Consensus 1190 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~ 1269 (1467)
|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+++|
T Consensus 1209 ~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1209 YIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred HhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 99998886543333345667999999999999999988878899999999999999999999999999999999999999
Q ss_pred CcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccC
Q 000481 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349 (1467)
Q Consensus 1270 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~ 1349 (1467)
++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||+++++++++.++|+||||+|+|+
T Consensus 1289 ~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEE
Q 000481 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLL 1429 (1467)
Q Consensus 1350 G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~iv 1429 (1467)
|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++||||+|||+|+|+
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhcc-CChhHHHHHHHHH
Q 000481 1430 EYDEPSKLMET-NSSFSKLVAEYWS 1453 (1467)
Q Consensus 1430 E~g~p~~Ll~~-~~~f~~lv~~~~~ 1453 (1467)
|+|+|+||+++ +|.|++|+++...
T Consensus 1449 E~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1449 EYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999995 4799999987654
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2e-207 Score=2109.41 Aligned_cols=1425 Identities=32% Similarity=0.537 Sum_probs=1166.0
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-c
Q 000481 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGR-IRRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDS-S 95 (1467)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 95 (1467)
.||| ||||++++++|+|+.++++++|+.++...+++..+.. ....+.+.....+..++.++.+.+.+|........ .
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAPAP 98 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3778 9999999999999999999999877643222211111 11122222222222222222233334432111111 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHH-HHHHHHHhhcc---cccccchhHhHHHHHHHH
Q 000481 96 MSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLLFS 169 (1467)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 169 (1467)
...+...+..++|+.+.+....++. ..++..+..||++..++... .+......... ...+....+...+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 1122334444555433222222222 22345667888876654332 11111111101 011111111221111111
Q ss_pred HhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHH
Q 000481 170 AFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAY 249 (1467)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~ 249 (1467)
.+..... .+..+ ..++...+.+.+||++||++||++|||+||++++|||++|+.+|||+++++++++.++++|++
T Consensus 179 ~~~~~~~--~~~~~---~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~ 253 (1522)
T TIGR00957 179 QLVLSCF--SDKSP---LFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVE 253 (1522)
T ss_pred HHHHHhh--cCCCC---ccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHH
Confidence 1111000 00000 000101123468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------------------------------------CCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000481 250 AWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTIAV 293 (1467)
Q Consensus 250 ~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 293 (1467)
.|+++.++.+ ++.++++|+++++++|++.++..+++.++..++.
T Consensus 254 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~ 333 (1522)
T TIGR00957 254 NWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMM 333 (1522)
T ss_pred HHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9997642110 0123467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Q 000481 294 VVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHS 373 (1467)
Q Consensus 294 ~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~ 373 (1467)
+++|++++.+++++.++..+...++.++++++++.++.+++.++|++...++++++|.+|+..+|+|+++++...+++.+
T Consensus 334 ~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~ 413 (1522)
T TIGR00957 334 FIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSST 413 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCC
Confidence 99999999999998654444456788888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 374 TGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQD 453 (1467)
Q Consensus 374 ~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 453 (1467)
+|+++|+|++|++++.++..++|.+|..|++++++++++|..+|++++++++++++++|++..+++++++.++++++.+|
T Consensus 414 ~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 493 (1522)
T TIGR00957 414 VGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKD 493 (1522)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcH
Q 000481 454 ERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPLNA 532 (1467)
Q Consensus 454 ~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~-~~~Lt~ 532 (1467)
+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+...+..+.+...|+++.+++|++|.+.. ++.+++
T Consensus 494 ~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~ 573 (1522)
T TIGR00957 494 NRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDA 573 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCH
Confidence 9999999999999999999999999999999999999988887777766666777788888888887776654 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccc-cCCCCcEEEEeEEEEeCCCCCCC
Q 000481 533 STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELAIP 611 (1467)
Q Consensus 533 ~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~-~~~~~~I~~~~~sf~~~~~~~~~ 611 (1467)
+.+|+++++++.++.|+..+|..+..+.++++|++||++||+.++.++...+.... ......|+++|++|+|+.+ +++
T Consensus 574 ~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 652 (1522)
T TIGR00957 574 EKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPP 652 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCc
Confidence 99999999999999999999999999999999999999999876543321111111 1122479999999999743 357
Q ss_pred cccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHH
Q 000481 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDK 691 (1467)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~ 691 (1467)
+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||+|||.||.++++++|++
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 732 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQ 732 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHH--HhcCC
Q 000481 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AALEK 769 (1467)
Q Consensus 692 ~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~--~~~~~ 769 (1467)
++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||++|||||||+||+++++++++.+.. +..++
T Consensus 733 ~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~ 812 (1522)
T TIGR00957 733 VLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN 812 (1522)
T ss_pred HHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998874 45678
Q ss_pred cEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCC--CC--CCCccc--cccc
Q 000481 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AG--QGGAEK--VEKG 843 (1467)
Q Consensus 770 ~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--~~~~ 843 (1467)
+|+|+|||+++.++.||+|++|++|+|++.|+++++.+.++.|.++...+..........+. .. ....+. .+..
T Consensus 813 ~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1522)
T TIGR00957 813 KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENG 892 (1522)
T ss_pred CEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888888877543221100000000 00 000000 0000
Q ss_pred -------CCCCCC-----CCCCCCC-CCCCCccc---cc-ccccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHH
Q 000481 844 -------RTARPE-----EPNGIYP-RKESSEGE---IS-VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGV 906 (1467)
Q Consensus 844 -------~~~~~~-----~~~~~~~-~~~~~~~~---~~-~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~ 906 (1467)
.....+ ....... .+..+..+ .. .+...+..++|+++.|.|+|++|+.|+++.+ +..+++.+
T Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~ 971 (1522)
T TIGR00957 893 MLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFLSI 971 (1522)
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHHHH
Confidence 000000 0000000 00000000 00 0011234567778899999999999999764 44444444
Q ss_pred HHHHHHHHhhhhhhHHHHhhcccC-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000481 907 LAQSGFVGLQAAATYWLAYAIQIP-----KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1467)
Q Consensus 907 ~~~~~~~~~~~~~~~wl~~~~~~~-----~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~ 981 (1467)
++.++..++..+.++|+++|.+.. .....+++++|++++++..++.+++.++....+.++++++|++++++++++
T Consensus 972 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 1051 (1522)
T TIGR00957 972 FLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRS 1051 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 555566777888999999998642 122356788999999999999998889999999999999999999999999
Q ss_pred cccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1467)
Q Consensus 982 p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~ 1061 (1467)
|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++|+
T Consensus 1052 p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1131 (1522)
T TIGR00957 1052 PMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQ 1131 (1522)
T ss_pred ChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888999999999999
Q ss_pred HHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV 1141 (1467)
Q Consensus 1062 l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~ 1141 (1467)
++|++.++++|+++|+.|+++|+.|||+||++++|.+++.+.+|.+.+..+.....++|+..++++++.+++++++.+.+
T Consensus 1132 ~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1211 (1522)
T TIGR00957 1132 LKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV 1211 (1522)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765554444333
Q ss_pred HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEE
Q 000481 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1467)
Q Consensus 1142 ~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nv 1221 (1467)
...+.+++|.+|++++|+..++.++.++++.++++|+.++|+||+.+|.+.|+|++...++..++..||.+|.|+|+||
T Consensus 1212 -~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nV 1290 (1522)
T TIGR00957 1212 -ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNY 1290 (1522)
T ss_pred -HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEE
Confidence 3357789999999999999999999999999999999999999999999988876533334456678999999999999
Q ss_pred EEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCc
Q 000481 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1467)
Q Consensus 1222 s~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1301 (1467)
+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++|++|+|+|||+||+++++++||++|++|||||+
T Consensus 1291 sf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~ 1370 (1522)
T TIGR00957 1291 CLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPV 1370 (1522)
T ss_pred EEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCc
Confidence 99998877789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1302 LFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1302 LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
||+||||+||||+++++|+|+|+||++|+++++|.++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||
T Consensus 1371 LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTS 1450 (1522)
T TIGR00957 1371 LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATA 1450 (1522)
T ss_pred ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
+||.+||+.||++|++.|++||+|+||||++|+++||||+|||+|+|+|+|+|+||++++|.|++|+++.
T Consensus 1451 alD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1451 AVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999889999998873
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.4e-196 Score=1989.70 Aligned_cols=1245 Identities=28% Similarity=0.477 Sum_probs=1083.2
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHh
Q 000481 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1467)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1467)
.+||++||++||++|||++|++++|||++|+.+|||+|+++++++.++++|++.|+++..++ .+.++|+++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764321 235789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1467)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 355 (1467)
+.++..+++.++.+++.+++|++++.+++|+...+. ....++.++++++++.++.+++.++++|...++++++|.+|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853222 2345788888888889999999888999999999999999999
Q ss_pred HHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1467)
Q Consensus 356 ~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~ 435 (1467)
.+|+|+++++...+++.++|+++|+|++|++++.++...+|.+|..|+++++++++||.++|+++++|+++++++++++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1467)
Q Consensus 436 ~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~ 515 (1467)
++++++.++++++++.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++.+++..+...+...+++..|.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887776677777788888888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCc
Q 000481 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1467)
Q Consensus 516 ~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1467)
+++|++|.+.. .++++.+|++++++++++.|+. .+|..+..+.++.+|++||++||..+|.+.... ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCc
Confidence 88888887764 3689999999999999999985 799999999999999999999998766532111 112346
Q ss_pred EEEEeEEEEeCCC-------------------------------CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHH
Q 000481 595 VKIQEGNFSWDPE-------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1467)
Q Consensus 595 I~~~~~sf~~~~~-------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l 643 (1467)
|+++|++|+|+.. ..+++|+|+||+|++|++++|+||||||||||+++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999531 014689999999999999999999999999999999
Q ss_pred hCCCCCCCcEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 644 ~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|+||+|+||++|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChH
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||||+||||+|++|++|||||||||||+++++++++.++....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998887777899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhhhhc-----------cC------CC--------CCCC-C--CCCCcc--c--------------
Q 000481 804 ELLLAGTAFEQLVNAHRDAI-----------TG------LG--------PLDN-A--GQGGAE--K-------------- 839 (1467)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~~~-----------~~------~~--------~~~~-~--~~~~~~--~-------------- 839 (1467)
++.+.++.|.+......... .+ .+ +.+. . .+...+ +
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99887666665553110000 00 00 0000 0 000000 0
Q ss_pred ----------------c-cccC-CCC-------CC-------CCCCCC--------------------C-----CCC-C-
Q 000481 840 ----------------V-EKGR-TAR-------PE-------EPNGIY--------------------P-----RKE-S- 860 (1467)
Q Consensus 840 ----------------~-~~~~-~~~-------~~-------~~~~~~--------------------~-----~~~-~- 860 (1467)
. +... ... ++ .+.... . .+. .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 0 0000 000 00 000000 0 000 0
Q ss_pred --------C--c-----ccc-------c--------c-----cccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHH
Q 000481 861 --------S--E-----GEI-------S--------V-----KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1467)
Q Consensus 861 --------~--~-----~~~-------~--------~-----~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~ 905 (1467)
. . .+. . . .....+.++|+++.|.++|++|+.|+++.+++.+++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 0 0 000 0 0 00012345677888999999999999987665555555
Q ss_pred HHHHHHHHHhhhhhhHHHHhhcccC---------cc-------------chhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1467)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~---------~~-------------~~~~~-~~~y~~l~~~~~~~~~~~~~~~~~~ 962 (1467)
+++.++.+++..+.+||+..|.... +. ...+| +++|+++.++..++.+++.++..+.
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677788889999998886411 00 11223 5566666666677788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000481 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1467)
Q Consensus 963 ~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1042 (1467)
+.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1467)
Q Consensus 1043 ~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1467)
|+++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+||++++|.+++.+..|.+.+.++.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcC
Q 000481 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1467)
Q Consensus 1123 ~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~ 1202 (1467)
.++++++.+..+.++++.+ ....+++|.+|++++|++.+...+.++++.+.++++.+.|+||+.+|.+.|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~--~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAI--GTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 9999887654444333322 22346788899999999999999999999999999999999999999998877542111
Q ss_pred --------------CCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1203 --------------DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1203 --------------~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 123456799999999999999999877889999999999999999999999999999999999998
Q ss_pred CCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1269 ~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
.+|+|+|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||+++++++++.++|+||||+|+|
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+.+||||+|||+|+|
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~i 1429 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHhccCChhHHHHHHHHHh
Q 000481 1429 LEYDEPSKLMETNSSFSKLVAEYWSS 1454 (1467)
Q Consensus 1429 vE~g~p~~Ll~~~~~f~~lv~~~~~~ 1454 (1467)
+|+|+|++|++++|.|++|+++....
T Consensus 1430 vE~g~p~~Ll~~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1430 KQYDSIQKLLNETSLFKQAMSAADRL 1455 (1490)
T ss_pred EEeCCHHHHHcCCcHHHHHHHHhChh
Confidence 99999999999899999999887653
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.1e-187 Score=1898.22 Aligned_cols=1253 Identities=29% Similarity=0.463 Sum_probs=1076.1
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhc-----------------
Q 000481 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN----------------- 259 (1467)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~----------------- 259 (1467)
+.||++||||.++++.|++|++.+..|..|+++|||+...+.++-+...++.+.-++...++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 479999999999999999999999999999999999999999997776666554433221100
Q ss_pred ----------------------------------C---------------------------------------------
Q 000481 260 ----------------------------------S--------------------------------------------- 260 (1467)
Q Consensus 260 ----------------------------------~--------------------------------------------- 260 (1467)
.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHH
Q 000481 261 ---------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVE 331 (1467)
Q Consensus 261 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~ 331 (1467)
+.+..++++++++++++.++..++++++.+++.+++|++++.+++++++++.....++.++++++++.++.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 00112689999999999999999999999999999999999999998665545556778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC--CCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 000481 332 SFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAI 409 (1467)
Q Consensus 332 ~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~--~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~ 409 (1467)
+++.+++++...+.+.++|.+|...+|+|+++++..... +.++|+++|+|++|++++.++..++|.+|..|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987665 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Q 000481 410 GVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE 489 (1467)
Q Consensus 410 ~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E 489 (1467)
++||.++||++++|++++++++|++.++++++.+.++++++.+|+|++.++|+++|||+||+++||+.|.+++++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1467)
Q Consensus 490 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri 569 (1467)
++.+++..+...+..++++..|.++.+++|++|.+.+ ++||++.+|+++++|+.++.|+.++|..++.+.++.+|++||
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888888899998888998888776 899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCc------cc--------c--c------c-------c-----------------------------ccCC
Q 000481 570 NAFLLDHELNND------DV--------R--R------I-------S-----------------------------LQKS 591 (1467)
Q Consensus 570 ~~fL~~~e~~~~------~~--------~--~------~-------~-----------------------------~~~~ 591 (1467)
++||..+|...+ .. . . . + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 999987652100 00 0 0 0 0 0001
Q ss_pred CCcEEEEeEEEEeCCC-------------------------------------CCCCcccceeEEecCCcEEEEeCCCCC
Q 000481 592 DRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1467)
...+.++|++|+|+.. .++++|+|+||+|++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 1246677777765410 124689999999999999999999999
Q ss_pred ChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000481 635 GKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1467)
Q Consensus 635 GKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig 714 (1467)
|||||+++|+|+++|++|+|.++++||||||+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCC
Q 000481 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1467)
Q Consensus 715 ~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1467)
++|.+|||||||||+||||+|++|++||||||||+||++++++++++++....+|+|+|+|||+++.++.||+|++|++|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998877666899999999999999999999999999
Q ss_pred eEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCccc--ccccccCC
Q 000481 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGE--ISVKGLTQ 872 (1467)
Q Consensus 795 ~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 872 (1467)
++.+.|+++++++.+ .+.++........+..+..........+. ........... ...........+ .......+
T Consensus 858 ~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 858 RVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDA-APGGAVDHEPP-VAKQEGNAEGGDGAALDAAAGR 934 (1560)
T ss_pred EEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccch
Confidence 999999999998753 46666543211110000000000000000 00000000000 000000000000 00011134
Q ss_pred cchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccC-ccchhHHHHHHHHHHHHHHHH
Q 000481 873 LTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP-KITSGILIGVYAGVSTASAVF 951 (1467)
Q Consensus 873 ~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~~~~~y~~l~~~~~~~ 951 (1467)
+.++|+++.|.++|++|+.|++..++..++++.++..+...++....++|++.|.... ......|+++|+++.++..++
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~ 1014 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFS 1014 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHH
Confidence 5567788899999999999999877665555555555555667788899999998643 233456788898888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000481 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031 (1467)
Q Consensus 952 ~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~ 1031 (1467)
.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.+++++
T Consensus 1015 ~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1015 VPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHH
Q 000481 1032 FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLF 1111 (1467)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~ 1111 (1467)
+..|.++++++|++++++.+.++|.+..|+++|.+..+++|++++++|+++|+.|||+|++++.|.+++.+..|.+.+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 88888878888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000481 1112 FHTNGVMEWLILRVEALQNLTLFTAALFLV---LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1467)
Q Consensus 1112 ~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~---~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~ 1188 (1467)
+.....++|+.+++++++++.+++++++.+ ....+.+++|.++++++|+..++.++.++++.+.++++.++|+||+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776555444332 22344578999999999999999999999999999999999999999
Q ss_pred HhhcC-CCCCCCCc-----------------------CCCCCC---CCCCCcceEEEEEEEEEeCCCCCcceeceeEEee
Q 000481 1189 QFMHI-PPEPPAIV-----------------------EDKRPP---SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFS 1241 (1467)
Q Consensus 1189 ~~~~~-~~e~~~~~-----------------------~~~~~~---~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~ 1241 (1467)
+|.+. |+|+.... +...++ +.||..|.|+|+||+|+|+++.++||+||||+|+
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~ 1334 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIA 1334 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEEC
Confidence 99963 43321100 011122 2356779999999999998887889999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHH
Q 000481 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321 (1467)
Q Consensus 1242 ~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~e 1321 (1467)
||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q 000481 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR-NRILVLDEANASIDSATDAILQRIIRQEFS 1400 (1467)
Q Consensus 1322 i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~-~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~ 1400 (1467)
||+||++|++++++.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|++.|+
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~ 1494 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS 1494 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999996 899999999999999999999999999999
Q ss_pred CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHH
Q 000481 1401 NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1401 ~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~ 1453 (1467)
+||+|+||||++|+.+||||+|||+|+|+|+|+|+||++ ++|.|++|+++...
T Consensus 1495 ~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred CCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999998 68999999987654
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-155 Score=1459.87 Aligned_cols=1159 Identities=22% Similarity=0.279 Sum_probs=880.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCC--cc----hHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAF---VNYSNRGE--EN----LQEGLSIVGCLIITKVVES-FTQR 336 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~---i~~~~~~~--~~----~~~~~~l~~~l~~~~~~~~-~~~~ 336 (1467)
+++.+..+-+.++++..+..+...+.+..+|++...+ .+.+.... .. ...++.++ .+.+..++.+ +...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVS 93 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4443334456778888888888888889999875433 33322111 11 11122222 1222222223 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000481 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGV 415 (1467)
Q Consensus 337 ~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~ 415 (1467)
+|.+.+.|...|+|..+..++ ||....+++.+.+|++++.|+.|++++++.+.- +..+......++.++++.+..
T Consensus 94 c~~~~geRq~~riR~~yl~~i----LrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAI----LRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888775555 555666777788899999999999999886542 222222223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000481 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE 495 (1467)
Q Consensus 416 lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~ 495 (1467)
-+..+++.+...+++......+++.+.+...+.+++..+..+++.|.+++||+|-+|+-|+...++..+.-+.-.|.-.+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555666778888888888888888999999999999999999999987665554443333333222
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000481 496 AQLRKAY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1467)
Q Consensus 496 ~~~~~~~-~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~ 574 (1467)
..+...+ ..+.+++.-......+|+|..++..+..+++++++.+.....-...+.+....+..+..|+++..+|.+.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 2222222 223333333444556677766666688999999999887777788899999999999999999999999887
Q ss_pred CCCC-CCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcE
Q 000481 575 DHEL-NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1467)
Q Consensus 575 ~~e~-~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 653 (1467)
..+. +.............+.|+|+||.|+||.+++.++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 6433 222211222334567899999999999988889999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
|.++| +||.|+|+|.+|++||+|||.||+| .+++++.++++++..++++..+|+|++|.+||+|..
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99988 4999999999999999999999996 678999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
|||||||||||||||.+||+||||||||||||++.++.+ +++++...+|||.|+|+||++++++||+|++|++|+|+|.
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999997765 7888899999999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCC--CCCCccc-ccccccCCcchH
Q 000481 800 GNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR--KESSEGE-ISVKGLTQLTED 876 (1467)
Q Consensus 800 G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 876 (1467)
|+|+||++.+|.|.++++.+.....+.+.+++.. ..+.......... ......+. ....... ...+.......+
T Consensus 569 G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~--~~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 645 (1228)
T KOG0055|consen 569 GTHDELIALGGIYSSLVRLQELEKAAEDEEEEES--LKEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEEPVSE 645 (1228)
T ss_pred cCHHHHHhccchHHHHHHHHhhhhhhhccccccc--hhhhhhhcccccc-ccccccCCcccccccccccccccccccccc
Confidence 9999999999999999987654322111000000 0000000000000 00000000 0000000 000000000000
Q ss_pred HHhhcCcccHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHhhhhhhHHHHhhcc----cC-c---cchhHHHHHHHHHHHH
Q 000481 877 EEMEIGDVGWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYAIQ----IP-K---ITSGILIGVYAGVSTA 947 (1467)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~----~~-~---~~~~~~~~~y~~l~~~ 947 (1467)
++ ....+++-++.+. .|.++++++++.+...+..+...+.++.... .+ + .....|..+|+++++.
T Consensus 646 ~~------~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~ 719 (1228)
T KOG0055|consen 646 ED------EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIV 719 (1228)
T ss_pred cc------ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223455554443 4666666777666666666666665554332 11 1 1233588899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHH
Q 000481 948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1467)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~--~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~ 1025 (1467)
..++.++..+++...+.+..+++|..+++++++.++.|||. +. |+|.+|+++|...+...+...+..+++.+..++.
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~ 798 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVII 798 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 45 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHH
Q 000481 1026 IIGIMTFVTWQVLVVA---IFAMVAVRFVQRYYIAT-ARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1467)
Q Consensus 1026 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~y~~~-~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~ 1101 (1467)
.+++.+++.|.+.+++ .|++++..+.+.+++.. +++.+.. .........|++++++||++|+.|++|++.|.
T Consensus 799 ~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~----~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~ 874 (1228)
T KOG0055|consen 799 GIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKA----YEEASKIAIEAVSNIRTVAALCAEEKFMELYK 874 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHH
Confidence 9999999999987665 56666666666665544 3333332 22335678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF----LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYL 1177 (1467)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~----~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~l 1177 (1467)
+.++...+..+.. ..|-++...+-.++..+.-++. .+++..+.+++..+-..+.-...-...+.....+..++
T Consensus 875 ~~l~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~ 951 (1228)
T KOG0055|consen 875 EELEKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDI 951 (1228)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 9888776655433 2333444333333333333332 24566777777765443332222233455566777888
Q ss_pred HHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeC--CCCCcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1178 ANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1178 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~--~~~~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
.+...|+.+++++++.+++-+...+.. ...-+.+|+|+|+||+|+|+ |+. +||+|+|++|++||+||+|||||||
T Consensus 952 ~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 952 SKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCCCCC
Confidence 999999999999998776432211111 11113689999999999995 333 5999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~ 1334 (1467)
|||++.+|.|+|+|.+|.|.|||.||++++++.||++|++|.|||.||++||||||... .+.+++||.+|++.+++++|
T Consensus 1029 KSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~F 1108 (1228)
T KOG0055|consen 1029 KSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNF 1108 (1228)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999744 24799999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
|.+||+||||.|||+|.+||||||||||||||++||||||+||||||+||.++|+.+|++|.+...+||.|+|||||+||
T Consensus 1109 I~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI 1188 (1228)
T KOG0055|consen 1109 ISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI 1188 (1228)
T ss_pred HhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
++||.|.|+++|+|+|.|+|++|++++|.|++|++.+
T Consensus 1189 qnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1189 QNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred hcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhc
Confidence 9999999999999999999999999999999998754
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.2e-140 Score=1425.21 Aligned_cols=1172 Identities=18% Similarity=0.194 Sum_probs=850.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1467)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 352 (1467)
+.+++.++++.++.++..++..+.|+++..+++.+.... .... ++..+++..++..++.....+...+++.++...
T Consensus 56 ~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 131 (1466)
T PTZ00265 56 ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKT 131 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888888888889999988653211 1111 122222333334444444455667788888888
Q ss_pred HHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 353 LMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICG 431 (1467)
Q Consensus 353 L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~ 431 (1467)
++..+|+|.++++..++++.+.|++.+.++.|++.+++.+. .+..+...++.++.++++++..-...+++.++++++++
T Consensus 132 lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~ 211 (1466)
T PTZ00265 132 LKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIY 211 (1466)
T ss_pred HHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999887643 34555555666666666665544444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000481 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWMS 510 (1467)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~~~~~ 510 (1467)
.+...+.+++++..++.++..++..+.+.|.++|||+||.|+.|+.+.++.++..+...+...+.....++ ..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 291 (1466)
T PTZ00265 212 ICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFI 291 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888888888899999999999999999999999988777765544433332222222222 22222333
Q ss_pred HHHHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000481 511 PTIISSVIFLGCALTGS--------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1467)
Q Consensus 511 ~~~~~~~~f~~~~l~~~--------~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1467)
.....++.++|..++.+ +.++++.+++++........++..+...+..++++.+|.+||.++++.++..++.
T Consensus 292 ~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~ 371 (1466)
T PTZ00265 292 LASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN 371 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 33334445555555543 3588898888776655555666666677899999999999999999765432111
Q ss_pred cccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEc-C---
Q 000481 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G--- 658 (1467)
Q Consensus 583 ~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~-g--- 658 (1467)
.+....+ ....|+++|++|+|+.+++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |
T Consensus 372 ~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 372 DDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL 450 (1466)
T ss_pred CCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcch
Confidence 1111111 1237999999999986444579999999999999999999999999999999999999999999994 3
Q ss_pred ----------eEEEEccCCcCCCCCHHHHHhcCCC---------------------------------------------
Q 000481 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP--------------------------------------------- 683 (1467)
Q Consensus 659 ----------~i~yv~Q~~~l~~~ti~eNi~~g~~--------------------------------------------- 683 (1467)
.||||+|+|.+|++||+|||.+|..
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 3899999999999999999999741
Q ss_pred -------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 000481 684 -------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1467)
Q Consensus 684 -------------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~sal 750 (1467)
.+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+|
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL 610 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 2346788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCC-----------------------------------
Q 000481 751 DAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGG----------------------------------- 794 (1467)
Q Consensus 751 D~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G----------------------------------- 794 (1467)
|+++++.+.+.+.+... +|+|+|+||||++.+..||+|++|++|
T Consensus 611 D~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1466)
T PTZ00265 611 DNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNN 690 (1466)
T ss_pred CHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccc
Confidence 99999988655443332 589999999999999999999999986
Q ss_pred ------------eEeEecChHHHHh-cCchHHHHHHHhhhhccCCCCCCCCCCCC--cccccccCCCC-CCCCCC-----
Q 000481 795 ------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLGPLDNAGQGG--AEKVEKGRTAR-PEEPNG----- 853 (1467)
Q Consensus 795 ------------~i~~~G~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~----- 853 (1467)
+|+|+|+|+||++ .++.|..+++.+...........+..... ........... ..+...
T Consensus 691 ~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1466)
T PTZ00265 691 NNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHE 770 (1466)
T ss_pred cccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 68999999876532211100000000000 00000000000 000000
Q ss_pred CCCCC-CCCc----cc-ccccccCCcchHHHh--hcCcc--cHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHH
Q 000481 854 IYPRK-ESSE----GE-ISVKGLTQLTEDEEM--EIGDV--GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWL 923 (1467)
Q Consensus 854 ~~~~~-~~~~----~~-~~~~~~~~~~~~e~~--~~g~v--~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl 923 (1467)
..... .... .+ .+.....+....++. ..... .+..+++++...... +++.+++.++..++.++.++.+
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 848 (1466)
T PTZ00265 771 NESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFALLY 848 (1466)
T ss_pred ccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 00 000000000000000 00001 122223333222111 2222223333334444444444
Q ss_pred Hhhccc----Cc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccchhHH
Q 000481 924 AYAIQI----PK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRIL 995 (1467)
Q Consensus 924 ~~~~~~----~~--~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~--~~~G~il 995 (1467)
+.+++. .. .....+..++++++++..++.+++.++..+.+.+...+++.++++++++.|++|||+ +++|+++
T Consensus 849 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~ 928 (1466)
T PTZ00265 849 AKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLS 928 (1466)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHH
Confidence 444331 11 112345566777777888888999999999999999999999999999999999996 8899999
Q ss_pred HHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--------
Q 000481 996 TRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRI-------- 1065 (1467)
Q Consensus 996 nR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~r~l~rl-------- 1065 (1467)
+|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|+.++.........+ ..++.++.
T Consensus 929 srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1466)
T PTZ00265 929 AHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTV 1008 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999998888888888888888888888999998877666544333222111111 11121111
Q ss_pred -----hccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 1066 -----NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALF 1139 (1467)
Q Consensus 1066 -----~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~ 1139 (1467)
+.+..+...+.++|+++|++|||+|+.|+++.+++.+..+...+..........++....+++..+.. ++..+.
T Consensus 1009 ~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1088 (1466)
T PTZ00265 1009 FAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFG 1088 (1466)
T ss_pred cchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123456788999999999999999999999999998877665554433332222222222222221 122223
Q ss_pred HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCC-CCCCCCcceEEE
Q 000481 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP-PSSWPFKGRIEL 1218 (1467)
Q Consensus 1140 ~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~-~~~wp~~g~I~f 1218 (1467)
..++..|.++.|.+..++.+.+........+...+.+++....+.+|+.++++.+++.+.......+ +...+..|.|+|
T Consensus 1089 ~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f 1168 (1466)
T PTZ00265 1089 SFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEI 1168 (1466)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEE
Confidence 3455678888887666555544333456667788899999999999999999876543211111111 001234688999
Q ss_pred EEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC----------------------------
Q 000481 1219 RQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP---------------------------- 1269 (1467)
Q Consensus 1219 ~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~---------------------------- 1269 (1467)
+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|+|+|+|
T Consensus 1169 ~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1169 MDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred EEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 9999999632 23699999999999999999999999999999999999999
Q ss_pred --------------------------CcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHH
Q 000481 1270 --------------------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEI 1322 (1467)
Q Consensus 1270 --------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei 1322 (1467)
++|+|+|||+||+++++++||++|+||||||+||+|||||||.... +++|+|+
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI 1328 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDV 1328 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHH
Confidence 6999999999999999999999999999999999999999997553 5899999
Q ss_pred HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--C
Q 000481 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--S 1400 (1467)
Q Consensus 1323 ~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~ 1400 (1467)
++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.. +
T Consensus 1329 ~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~ 1408 (1466)
T PTZ00265 1329 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKA 1408 (1466)
T ss_pred HHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999873 6
Q ss_pred CcEEEEEccCchhhcccCEEEEEeC----CEE-EEecChhHHhc-cCChhHHHHHHH
Q 000481 1401 NCTVITVAHRVPTVIDSDMVMVLSY----GKL-LEYDEPSKLME-TNSSFSKLVAEY 1451 (1467)
Q Consensus 1401 ~~TvI~IAHRl~ti~~~DrIlVl~~----G~i-vE~g~p~~Ll~-~~~~f~~lv~~~ 1451 (1467)
++|+|+||||++|+.+||+|+||++ |++ +|.|+|+||++ ++|.|++|++.+
T Consensus 1409 ~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1409 DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9999999999999999999999999 995 59999999998 699999998653
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-92 Score=842.66 Aligned_cols=515 Identities=25% Similarity=0.390 Sum_probs=446.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHH
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~ 1016 (1467)
...+..++.++.+++.+++.+++.+.+.+...+++..+|++++++.++|||.+.+|++++|+++|...+...++..+...
T Consensus 190 ~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~ 269 (716)
T KOG0058|consen 190 ACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDG 269 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34566677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHH
Q 000481 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1467)
Q Consensus 1017 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f 1096 (1467)
+.+.++.++.+++|++.+|.+..+.+..+++...+.++|.+..|++.+...++-+...+...|.+++++|+|+|+.|++.
T Consensus 270 lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E 349 (716)
T KOG0058|consen 270 LRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQE 349 (716)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHH
Confidence 99999999999999999999987766555555555555555555555555566667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
.++|.+.++...+...........+....++.+++....+ .....++..|.+++|.+..++.|...+...+.++...++
T Consensus 350 ~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys 429 (716)
T KOG0058|consen 350 VKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYS 429 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988876554432222222222222233333332222 223346678899999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCC
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGS 1254 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGs 1254 (1467)
++-+.+.|.+|++||+|.+|.-+.. +...|. ..+|.|+|+||+|+|+.. ..+||||+||+|+|||+||+|||||+
T Consensus 430 ~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGs 505 (716)
T KOG0058|consen 430 ELMKGVGASERVFELMDRKPRIPLT--GTLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGS 505 (716)
T ss_pred HHHHhcchHHHHHHHhccCCCCCCC--Cccccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCC
Confidence 9999999999999999987665432 222222 468999999999999532 23599999999999999999999999
Q ss_pred cHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCch
Q 000481 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKT 1333 (1467)
Q Consensus 1255 GKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~ 1333 (1467)
||||++++|.|+|+|++|+|++||+||++++.+.||++||+|.|||+||+|||||||... ...+||||.+|+++++.++
T Consensus 506 GKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~ 585 (716)
T KOG0058|consen 506 GKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHE 585 (716)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHH
Confidence 999999999999999999999999999999999999999999999999999999999522 2589999999999999999
Q ss_pred HHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchh
Q 000481 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPT 1413 (1467)
Q Consensus 1334 ~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~t 1413 (1467)
||.++|+||||.|||+|..|||||||||||||||+|||+|||||||||+||.++|..||+++.+..+++|||+|||||+|
T Consensus 586 FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLST 665 (716)
T KOG0058|consen 586 FITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLST 665 (716)
T ss_pred HHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHHhc
Q 000481 1414 VIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWSSC 1455 (1467)
Q Consensus 1414 i~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~~~ 1455 (1467)
|+.+|+|+|+|+|+|+|.|+|+||++ ++|.|++|+++.....
T Consensus 666 V~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 666 VRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred hhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccC
Confidence 99999999999999999999999999 5699999998765433
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.8e-83 Score=802.92 Aligned_cols=539 Identities=26% Similarity=0.400 Sum_probs=460.0
Q ss_pred HHHHHHhhhhhhHHHHhhccc--Cc--cchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000481 909 QSGFVGLQAAATYWLAYAIQI--PK--ITSGI-LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1467)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~--~~--~~~~~-~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~ 983 (1467)
.+..+.+..+.++.....+|. ++ ..... ....+++.++...++.++|.++..+.+.+....+-.++++++++.|+
T Consensus 163 sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl 242 (709)
T COG2274 163 SLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPL 242 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcH
Confidence 333444555566665555442 11 22222 23344555667788899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 984 LFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063 (1467)
Q Consensus 984 ~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~ 1063 (1467)
+||+++++|++++|+. |++.|...+.......+..++..+..++++++++|.++++++..++++..+.-...+..|+..
T Consensus 243 ~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~ 321 (709)
T COG2274 243 SYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321 (709)
T ss_pred HHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 566666667666666666666677778888888998877766555554444333333333333
Q ss_pred HHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVL 1142 (1467)
Q Consensus 1064 rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~-~~~ 1142 (1467)
+...+..+...++..|++.|+.|||+.+.|+++..++++..++..+..+.......|......++..+..+....+ +.+
T Consensus 322 ~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~l 401 (709)
T COG2274 322 RKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAIL 401 (709)
T ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566789999999999999999999999999999999999888888888888777777776655544433 456
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEE
Q 000481 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLK 1222 (1467)
Q Consensus 1143 ~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs 1222 (1467)
+..+.++.|.+-.+.+.+..+++++..++..+.+++....+.+|+.++.+.|+|.+. ++.+...|+.+|+|+|+||+
T Consensus 402 Vl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nvs 478 (709)
T COG2274 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVS 478 (709)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEEE
Confidence 678899999998888889999999999999999999999999999999999988643 22234456778999999999
Q ss_pred EEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcc
Q 000481 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1467)
Q Consensus 1223 ~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1302 (1467)
|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++||||++|
T Consensus 479 f~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L 558 (709)
T COG2274 479 FRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL 558 (709)
T ss_pred EEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1303 FRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1303 F~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
|+||||||+...+ +.+|||+++|++.+++++||.++|.||||+|||+|.||||||||||+||||+++||+|||||||||
T Consensus 559 f~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTS 638 (709)
T COG2274 559 FSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS 638 (709)
T ss_pred hcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 9999999996443 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
|||++||+.|.+.+++..++||+|+||||++|+++||||+|||+|+|+|.|+|+||++.+|.|+++++.+
T Consensus 639 aLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 639 ALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred ccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998654
No 11
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.2e-80 Score=788.06 Aligned_cols=536 Identities=25% Similarity=0.383 Sum_probs=442.0
Q ss_pred HHHHhhhhhhHHHHhhcccCc--c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000481 911 GFVGLQAAATYWLAYAIQIPK--I-TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1467)
Q Consensus 911 ~~~~~~~~~~~wl~~~~~~~~--~-~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd 987 (1467)
+...+....+++++...+... . ....+...++++.++..++.+...++..+.+.+....++.++++++++.|++||+
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~ 104 (567)
T COG1132 25 LSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD 104 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhC
Confidence 334445555555554333211 1 1122334444555566677777778888888999999999999999999999999
Q ss_pred cccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000481 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1467)
Q Consensus 988 ~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~ 1067 (1467)
++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++.+...+++.+....+.+..++..+...
T Consensus 105 ~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (567)
T COG1132 105 KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVR 184 (567)
T ss_pred cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888875555656778888888888899988777666655555555555555566777777
Q ss_pred cccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccC
Q 000481 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLVLIPRG 1146 (1467)
Q Consensus 1068 ~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~~ 1146 (1467)
...+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+.... ..+....+..+
T Consensus 185 ~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (567)
T COG1132 185 EALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSG 264 (567)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77789999999999999999999999988777776665554443222222222222222222222221 12222334567
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeC
Q 000481 1147 YVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226 (1467)
Q Consensus 1147 ~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~ 1226 (1467)
.++.|.+..++.|...+..++..+...+..++....|.||+.++.+.+++... ...+ .++..|+|+|+||+|+|+
T Consensus 265 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~y~ 339 (567)
T COG1132 265 SLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFSYP 339 (567)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEEcC
Confidence 78999999999999999999999999999999999999999999987654221 1111 335568899999999997
Q ss_pred CCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccc
Q 000481 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306 (1467)
Q Consensus 1227 ~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gT 1306 (1467)
+ .+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||++++.++||++|++|||||+||+||
T Consensus 340 ~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~T 418 (567)
T COG1132 340 G-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGT 418 (567)
T ss_pred C-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeeccc
Confidence 5 346999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCC-CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000481 1307 VRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385 (1467)
Q Consensus 1307 IR~NLdp~~~-~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~ 1385 (1467)
||+||++..+ ++|||+++|++.++++|++.++|+||||.|||+|.+||||||||+|||||++|+|+|||||||||++|+
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 9999997765 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1386 ATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1386 ~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
+||+.||+++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||++++|.|++|++++.
T Consensus 499 ~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 499 ETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred HhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 9999999999988889999999999999999999999999999999999999999999999987754
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-78 Score=773.43 Aligned_cols=508 Identities=19% Similarity=0.231 Sum_probs=419.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+.+++++.++..++.+++.++....+.+....++.++++++++.|++||++.++|++++|+++|++.++..+...+..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~ 145 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMA 145 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455555667778888889999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++.+++.++++++.+|.+.++++..+++..++...+.+..++..+......+.+.+++.|+++|+.+||+|++|+++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 225 (588)
T PRK11174 146 LAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAET 225 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHH
Confidence 88888888888888899988766655555555555555555555555555666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccHHHH---------HHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQ 1167 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~~~~~~g~~---------g~~l~~~~~l~~~~ 1167 (1467)
+++.+..+...+..........+......++..+...+.. ++.... .+.++.|.+ -.++.++..+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl 304 (588)
T PRK11174 226 ESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPL 304 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHH
Confidence 9998887766655443333333333323333322221111 111111 244554432 12224555667888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEE
Q 000481 1168 VFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVG 1247 (1467)
Q Consensus 1168 ~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVg 1247 (1467)
..+...+..+.....+.+|+.++.+.|++++.. ... +...+..+.|+|+||+|.|.++ +++|+|+||+|+|||++|
T Consensus 305 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~-~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~va 380 (588)
T PRK11174 305 RDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEK-ELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIA 380 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccc-ccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEE
Confidence 889999999999999999999999876543211 111 1111234679999999988654 569999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHH
Q 000481 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKAL 1326 (1467)
Q Consensus 1248 IVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL 1326 (1467)
|||+||||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||||||+||+|||||||.... +++|||+++|+
T Consensus 381 IvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al 459 (588)
T PRK11174 381 LVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQAL 459 (588)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999997653 58999999999
Q ss_pred HHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Q 000481 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVIT 1406 (1467)
Q Consensus 1327 ~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~ 1406 (1467)
+.|++++++.++|+||||.|||+|.||||||||||+||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+
T Consensus 460 ~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIi 539 (588)
T PRK11174 460 ENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539 (588)
T ss_pred HHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1407 VAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1407 IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
||||++++.+||+|+||++|+++|.|+|+||++++|.|++|++.+
T Consensus 540 ItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 540 VTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred EecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHh
Confidence 999999999999999999999999999999999999999998654
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.1e-78 Score=780.40 Aligned_cols=536 Identities=24% Similarity=0.328 Sum_probs=443.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhcccC--ccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 905 GVLAQSGFVGLQAAATYWLAYAIQIP--KIT---SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1467)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~---~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il 979 (1467)
.+++.++...+....+++.+...+.- +.+ ....+.+++++.++..++.+++.++....+.+...+++.+++++++
T Consensus 166 ~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll 245 (711)
T TIGR00958 166 AFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLL 245 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566666666544421 111 1123444555566677788888889999999999999999999999
Q ss_pred cccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1467)
Q Consensus 980 ~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 1059 (1467)
+.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|.+.++.+..+++...+.+.+.+..
T Consensus 246 ~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~ 325 (711)
T TIGR00958 246 RQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325 (711)
T ss_pred cCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888888999999987766655555555555555555
Q ss_pred HHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 000481 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNG---VMEWLILRVEALQNLTLFTA 1136 (1467)
Q Consensus 1060 r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~---~~~wl~~rl~~~~~~~~~~~ 1136 (1467)
++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+....... ...|....+..+..+ ++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~il 403 (711)
T TIGR00958 326 QLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQV--LVL 403 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 555555555666778999999999999999999999999999888876655433322 223332222222111 112
Q ss_pred HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceE
Q 000481 1137 ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRI 1216 (1467)
Q Consensus 1137 ~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I 1216 (1467)
.+...++..|.++.|.+..++.|...+..++..+...+.++.+...+.+|+.++++.+++.+.. . ....++..|.|
T Consensus 404 ~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~I 479 (711)
T TIGR00958 404 YYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGLI 479 (711)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCeE
Confidence 2223445678999999999999999999999999999999999999999999999876654321 1 11223457889
Q ss_pred EEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1217 ELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
+|+||+|+|+.+ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 999999999643 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
|||||.+|+|||||||... ...+|+++++|++.++++++++++|+|+||.+||+|.+||||||||+|||||++++|+||
T Consensus 560 v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred EecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999744 357899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
|||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++|.|++|+
T Consensus 640 ILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred EEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhcC
Confidence 9999999999999999999 34457999999999999999999999999999999999999999999999874
No 14
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-77 Score=718.87 Aligned_cols=550 Identities=20% Similarity=0.259 Sum_probs=449.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
+.+.+..|+.+..+.++.++.....+..|.++.+++|.+...+.....-.-....+.+..++.+++.....+.....+.+
T Consensus 139 ~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~r 218 (716)
T KOG0058|consen 139 LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGER 218 (716)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888999999999999999999997754211111111112223333344445444444555566667
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1467)
+-..++..+|++.++....+++++.+||++++++.|++.+.+.+ .++.......++.+.++.+++..-.-.+++.++.+
T Consensus 219 v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~ 298 (716)
T KOG0058|consen 219 VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVV 298 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh
Confidence 77777777899999999999999999999999999999998754 35667777788888888888766554555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVI 506 (1467)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~-~~~ 506 (1467)
.+++.+..++++++++..++.+++..+-.+..+|.|++||+||+|+-|+...++.++.-++-++.-+|..+...+. ...
T Consensus 299 P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~ 378 (716)
T KOG0058|consen 299 PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGST 378 (716)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHH
Confidence 5666677788999999999999999999999999999999999999997544433332222222222222222211 111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 000481 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1467)
Q Consensus 507 ~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 586 (1467)
..+.......+.|.|..++..+.+|+|.+.+++.|-..+..++..+...++.++++..+.+|+.++++.++.-+......
T Consensus 379 ~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~ 458 (716)
T KOG0058|consen 379 NLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLA 458 (716)
T ss_pred HHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccc
Confidence 12233445566778888888899999999999999999999999999999999999999999999998765433221111
Q ss_pred cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 000481 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1467)
Q Consensus 587 ~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 658 (1467)
+ ....+.|+|+||+|+||.+++.++|+|+||+|+|||.+|+||||||||||+.++|+++|+|++|+|.++|
T Consensus 459 p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 459 P-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINH 537 (716)
T ss_pred c-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCH
Confidence 2 1456789999999999999889999999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+||+|.|||.+|++||+|||.||.+ .++|++.++.+.+..+++|..+|+|++|.|||+|..|||||||||||||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 4999999999999999999999986 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC-ch
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TA 811 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~-~~ 811 (1467)
||++||.||||||+|||||++.+..+ ++.++...+++|||+|+||++++++||+|+|+++|+++|.|+|+|+++.. +.
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gl 696 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGL 696 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccH
Confidence 99999999999999999999987654 77888888999999999999999999999999999999999999999987 79
Q ss_pred HHHHHHHhh
Q 000481 812 FEQLVNAHR 820 (1467)
Q Consensus 812 ~~~~~~~~~ 820 (1467)
|.++++.+.
T Consensus 697 y~~Lv~~q~ 705 (716)
T KOG0058|consen 697 YAKLVQRQL 705 (716)
T ss_pred HHHHHHHhc
Confidence 999987654
No 15
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.7e-77 Score=773.13 Aligned_cols=505 Identities=24% Similarity=0.357 Sum_probs=430.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
...++++.++..++.+++.++....+.+....++..+++++++.|++||++.++|++++|++ |++.+...+...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~ 257 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTL 257 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 34455556667788889999999999999999999999999999999999999999999997 78888887777666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++..+..+++++..+|.+.++++.+++++..+.....+..+...+......+...+++.|+++|+.|||+|+.++++.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 337 (686)
T TIGR03797 258 LSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAF 337 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHH
Confidence 66666667777788888888766655544444443333333333333333445677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~ 1176 (1467)
+++.+..+...+..+.......|......++..+...+. .+..+++..|.++.|.+-.+.++...+..++..+...+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~ 417 (686)
T TIGR03797 338 ARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLIS 417 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877777666666666555554443333222 2233445678899998888888888999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcH
Q 000481 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1467)
Q Consensus 1177 le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGK 1256 (1467)
+.....+.+|+.++++.|+|.+. +..++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+|||||
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 492 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492 (686)
T ss_pred HHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCH
Confidence 99999999999999987766431 11111 23457899999999997666789999999999999999999999999
Q ss_pred HHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHh
Q 000481 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336 (1467)
Q Consensus 1257 STL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~ 1336 (1467)
|||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||.+|+|||||||..++.++|+|+++|++.+++++++.
T Consensus 493 STLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~ 572 (686)
T TIGR03797 493 STLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIR 572 (686)
T ss_pred HHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998766689999999999999999999
Q ss_pred hCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc
Q 000481 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID 1416 (1467)
Q Consensus 1337 ~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~ 1416 (1467)
++|+|+||++||+|.|||||||||++||||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++.+
T Consensus 573 ~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~ 650 (686)
T TIGR03797 573 AMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN 650 (686)
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999986 6899999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhccCChhHHHHHH
Q 000481 1417 SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450 (1467)
Q Consensus 1417 ~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~ 1450 (1467)
||||+|||+|+|+|.|+|+||++++|.|++|+++
T Consensus 651 ~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 651 ADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 9999999999999999999999999999999864
No 16
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.1e-76 Score=773.37 Aligned_cols=558 Identities=21% Similarity=0.281 Sum_probs=453.2
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhccc--Cc--cc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PK--IT-SGILIGVYAGVSTASAVFVYFRSFFAA 960 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~--~~-~~~~~~~y~~l~~~~~~~~~~~~~~~~ 960 (1467)
++.++.+++..+.... ..+++.++...+..+.++.+....+. ++ .. ...+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALL--YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654333222 22222233333444455555544431 11 11 112334445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000481 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1467)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1040 (1467)
..+.+....++.++++++++.|++||++.++|++++|++.| +.+...+...+...+..++.+++.+++++..+|.+.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 56777777777777777777888888888889988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1467)
Q Consensus 1041 ~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1467)
.+.+++++.++..++.+..++..+......+...+++.|+++|+.+||++|.++.+.+++.+..+...+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555555555545556667889999999999999999999999999988777766665555555555
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000481 1121 LILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1467)
Q Consensus 1121 l~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~ 1199 (1467)
......++..+..++. .+..+++..|.++.|.+..+.++...+..++..+...+.++.....+.+|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 5544444443332222 223345567889999999999999999999999999999999999999999999988776532
Q ss_pred CcCC--C-CCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEE
Q 000481 1200 IVED--K-RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1467)
Q Consensus 1200 ~~~~--~-~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~I 1276 (1467)
.... . .....++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876677999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1277 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
||+|+++++.+++|++|++|||||.+|+|||||||..++ +++|+++++|++.+++++++.++|+|+||.++|+|.||||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999997654 5899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChh
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~ 1435 (1467)
||||||+||||++++|+|||||||||+||.+||+.|.+.+++ .++|+|+||||++++.+||||+|||+|+|+|.|+|+
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred HHhccCChhHHHH
Q 000481 1436 KLMETNSSFSKLV 1448 (1467)
Q Consensus 1436 ~Ll~~~~~f~~lv 1448 (1467)
||++++|.|++|+
T Consensus 697 ~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAVGGAYARLI 709 (710)
T ss_pred HHHHcCCcHHHHh
Confidence 9999999999986
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-76 Score=755.25 Aligned_cols=506 Identities=25% Similarity=0.375 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
++++.++..++.+.+.++....+.+...+++.++++++++.|.+||+..+.|++++|+++|++.++..+...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677788888889999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1100 (1467)
+.+++.++++++.+|.+.++.+..+++...+...+.+..+...+......+...+++.|+++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~ 230 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERM 230 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHH
Confidence 88888888888888887655443333222233333333333334344455677899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1101 LKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl-~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
.+..+...+..+.......+. .....++..+..++..+.......|.++.|.+..++.|...+..++..+...+..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 231 GEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887665555433332222221 1112222222211111111123468889999989999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+.+|+.++.+.++++.. .. ..++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTL 383 (592)
T PRK10790 311 AVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTL 383 (592)
T ss_pred HHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999886654321 11 112345789999999999754 569999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp 1339 (1467)
+++|+|+|+|++|+|.+||+|+++++.+.+|++|+||||||.+|+||||+||..++.++|+++++|++++|+++++.++|
T Consensus 384 l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp 463 (592)
T PRK10790 384 ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLP 463 (592)
T ss_pred HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887889999999999999999999999
Q ss_pred CCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCE
Q 000481 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDM 1419 (1467)
Q Consensus 1340 ~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~Dr 1419 (1467)
+||||.++|+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+
T Consensus 464 ~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ 543 (592)
T PRK10790 464 DGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADT 543 (592)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1420 VMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1420 IlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
|++|++|+++|.|+|+||+++++.|++|++.+..
T Consensus 544 ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999986644
No 18
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.7e-76 Score=770.48 Aligned_cols=556 Identities=21% Similarity=0.278 Sum_probs=445.3
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhccc--Cccc--h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT--S-GILIGVYAGVSTASAVFVYFRSFFAA 960 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~--~-~~~~~~y~~l~~~~~~~~~~~~~~~~ 960 (1467)
+..++.|++..+... ...+++.++...+.++.++++....+. ++.. . ..+...++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665433332 222333333344555566666665542 1111 1 12233344455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000481 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1467)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1040 (1467)
+.+.+...+++.++++++++.|+.||++.++|++++|++ |.+.+...+...+...+..++.++..++++++.+|.+.++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 7777766665555555555566666667777888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1467)
Q Consensus 1041 ~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1467)
++..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.++++.+++.+..+...+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555555555555555666677889999999999999999999999999888777665554443333322
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000481 1121 LILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1467)
Q Consensus 1121 l~~rl~~~~~~~~-~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~ 1199 (1467)
......++..+.. ++..+...++..|.++.|.+..+.++...+..++..+...+..+.....+++|+.++.+.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2222222222211 122233345568899999999999999999999999999999999999999999999988776532
Q ss_pred CcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCe
Q 000481 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1467)
Q Consensus 1200 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~ 1279 (1467)
.. .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 461 ~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 KK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred cc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 11 111224457899999999999643 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhhccEEeccCCcccccchHHhcCCC--CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1280 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
|+++++.+++|++|+||||||.||+|||||||... ..++|+++++|++.+++++++.++|+||||.++|+|.+|||||
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999765 3589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||||+||||++++|+|||||||||+||++||+.|++.|++ .+++|+|+||||++++..||+|+||++|+++|.|+|+||
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987 478999999999999999999999999999999999999
Q ss_pred hccCChhHHHHH
Q 000481 1438 METNSSFSKLVA 1449 (1467)
Q Consensus 1438 l~~~~~f~~lv~ 1449 (1467)
++++|.|++|++
T Consensus 696 ~~~~~~y~~l~~ 707 (708)
T TIGR01193 696 LDRNGFYASLIH 707 (708)
T ss_pred HhcCCcHHHHhh
Confidence 999999999874
No 19
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-77 Score=754.99 Aligned_cols=512 Identities=23% Similarity=0.305 Sum_probs=421.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHH
Q 000481 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1467)
Q Consensus 936 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~ 1015 (1467)
.+...|+.++++..+..++...++.+.+.|...+++.+.+++++|++++|||++..|.+..|+++|++.+++.+...+..
T Consensus 72 ~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~ 151 (1228)
T KOG0055|consen 72 KVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGN 151 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHH
Confidence 44556667777777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHH
Q 000481 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1095 (1467)
++..+..+++.+++.++..|.+.++.++..++..+....+.+..-.....+..+.+..-+...|++.+++|+.||+.|++
T Consensus 152 ~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~ 231 (1228)
T KOG0055|consen 152 FIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKK 231 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHH
Confidence 99999999999999999999998887766666555554444443333344444455667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPGLVGLSLSYAFTLTGTQVFLS 1171 (1467)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~----~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~ 1171 (1467)
..++|.+.++...+...... -|.++-..+...+.....++.++ ++..+..++|.+...+...+.-...+....
T Consensus 232 e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~ 308 (1228)
T KOG0055|consen 232 EIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQAS 308 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccc
Confidence 99999999887766543322 12222222221122222222222 233455666654444433333333444445
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCC-CcceeceeEEeeCCcEEEEEc
Q 000481 1172 RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVG 1250 (1467)
Q Consensus 1172 ~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~is~~I~~GekVgIVG 1250 (1467)
-....+.+...|..++.+.++..+.........+.. -..+|.|||+||+|+|+... .++|+|+||+|++||.||+||
T Consensus 309 p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~--~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG 386 (1228)
T KOG0055|consen 309 PHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVL--SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVG 386 (1228)
T ss_pred cchHHHhccccchHHHHHHhcCCCCCCcccccCCcc--cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEEC
Confidence 556677788899999999887644432211122121 12579999999999995332 369999999999999999999
Q ss_pred CCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHc
Q 000481 1251 RTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKC 1329 (1467)
Q Consensus 1251 rTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~ 1329 (1467)
+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+|||.... +.|++|+.+|++.+
T Consensus 387 ~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a 466 (1228)
T KOG0055|consen 387 PSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA 466 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999997443 47899999999999
Q ss_pred CCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Q 000481 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409 (1467)
Q Consensus 1330 ~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAH 1409 (1467)
+.++|+..+|+||||.|||+|..|||||||||||||||+|+|+||+||||||+||+++|+.+|++|++..+|+|.|+|||
T Consensus 467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH 546 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1410 Rl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
||+||+++|+|+||++|+|+|.|+|+||++.+|.|++||+-+.
T Consensus 547 RLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 547 RLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred ehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHh
Confidence 9999999999999999999999999999997799999997553
No 20
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.5e-75 Score=743.18 Aligned_cols=506 Identities=20% Similarity=0.304 Sum_probs=436.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
++++.++..++.+++.++....+.+....++..+++++++.|.++|++...|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777788888888899999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1100 (1467)
+.+++.++++++.+|.+.++++..+++..++.....+..++..+......+...+++.|.++|+.+||+|+.++.+.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 88888888888888887776665555554444444444444444444556778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
.+..+...+..........|.....+++..+..... .+....+..|.++.|.+..++++...+..++..+...+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888777666655555555555555444333222 2223345568899999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+.+|+.++.+.+++.+.. .. ...|..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~~--~~---~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDEG--KR---VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCCC--Cc---CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 999999999999876553211 11 1123457899999999997666779999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC--CCCCHHHHHHHHHHcCCchHHhh
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISS 1337 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~ei~~aL~~~~l~~~i~~ 1337 (1467)
+++|+|+++|++|+|++||+|+++++.+++|++|+||||||++|+||||+||... +.++|+|++++++.+++++++++
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999743 24799999999999999999999
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhccc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~ 1417 (1467)
+|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||++|++.|.+.|++..++||+|+||||++++.+|
T Consensus 466 lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~ 545 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545 (582)
T ss_pred cccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
|+|++|++|+|+|.|+|++|+++++.|++|++++
T Consensus 546 D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 546 DEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 9999999999999999999999999999998754
No 21
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.4e-75 Score=737.13 Aligned_cols=504 Identities=19% Similarity=0.238 Sum_probs=419.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
+.++.++..++.++..++....+.+....++.++++++++.|+.||++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888889999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAV-RFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~ 1099 (1467)
+.+++.++++++.+|.+.++++..+++. ..+..++.+..+...+......+.+.+.+.|+++|+.+||+|+.++++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 8888888889999998877654333322 223344444444444555566677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000481 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAF-TLTGTQVFLSRWYCYLA 1178 (1467)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~-~l~~~~~~~~~~~~~le 1178 (1467)
+.+..++..+..........+.....+++..+.......+......+.++.|.+..++.|.. ....++..+...+..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877666555544444444444444333322222221111356677776655555543 33456666777888889
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHH
Q 000481 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1467)
Q Consensus 1179 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKST 1258 (1467)
....+.+|+.++.+.+++.+... ..++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~~--~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFPT--TSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCc--ccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 99999999999998766532111 1111 1345789999999999765557999999999999999999999999999
Q ss_pred HHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhh
Q 000481 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1467)
Q Consensus 1259 L~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~ 1337 (1467)
|+++|.|+++|++|+|.+||+|+++++.+++|++|++|||||.+|+|||||||.... +.+|+++++|++.+++++++.+
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999999999999999999999999999999999999996543 5799999999999999999999
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhccc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~ 1417 (1467)
|+||||.+||+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+|
T Consensus 462 -p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~ 540 (574)
T PRK11160 462 -DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540 (574)
T ss_pred -ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
|+|+||++|+++|.|+|+||++++|.|++|++
T Consensus 541 d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred CEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 99999999999999999999999999999875
No 22
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.1e-74 Score=751.90 Aligned_cols=495 Identities=22% Similarity=0.307 Sum_probs=419.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHH
Q 000481 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1467)
Q Consensus 940 ~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~ 1019 (1467)
.++++.++..++.+++.++..+.+.+...+++..+++++++.|++| ++.++|++++|+ +|++.+...+...+...+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~ 269 (694)
T TIGR03375 192 GVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALID 269 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHH
Confidence 3444455667788889999999999999999999999999999998 788999999999 79999998887776666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHH
Q 000481 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1467)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~ 1099 (1467)
++.++..++++++.+|.+.++.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.++
T Consensus 270 ~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 349 (694)
T TIGR03375 270 LPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRR 349 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHH
Confidence 66666677777888888776655554444444444444444554545556678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLA 1178 (1467)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le 1178 (1467)
+.+..+...+..+.......+......++..+... +..+...++..|.++.|.+..++++...+..++..+...+.++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~ 429 (694)
T TIGR03375 350 WEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQ 429 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777666555544444433333333322222 22223344567889999998899999999999999999999999
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHH
Q 000481 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1467)
Q Consensus 1179 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKST 1258 (1467)
....+.+|+.++.+.++|.+... ......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKST 506 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPEGT---RFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKST 506 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC---CCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHH
Confidence 99999999999998877643211 111112346789999999999766667999999999999999999999999999
Q ss_pred HHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhh
Q 000481 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1467)
Q Consensus 1259 L~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~ 1337 (1467)
|+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.+|+|||||||...+ +++|+|+++|++.+++++++.+
T Consensus 507 LlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~ 586 (694)
T TIGR03375 507 LLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRR 586 (694)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998654 3899999999999999999999
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhccc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~ 1417 (1467)
+|+||||.+||+|.|||||||||++||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+|
T Consensus 587 lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~ 666 (694)
T TIGR03375 587 HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV 666 (694)
T ss_pred CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhc
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+|+||++|+++|.|+|+||++
T Consensus 667 D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 667 DRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred CEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999997
No 23
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-74 Score=680.04 Aligned_cols=512 Identities=20% Similarity=0.265 Sum_probs=428.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHH
Q 000481 935 GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014 (1467)
Q Consensus 935 ~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~ 1014 (1467)
..+++..++..++..+..+.+..+..+.+.++...++..+++++.+.+..|-...|+|++....+..++.++..+...++
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcc
Q 000481 1015 FVAASGTELLAIIGIMTFVTWQVLVV---AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFN 1091 (1467)
Q Consensus 1015 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~ 1091 (1467)
.+..+.+..+..++.+++.+|...++ +.|+++++.++... .++...+..-.+...+.+||.+.++|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~---~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL---AAKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 99999999999999999999986554 45665555443221 2222222233344567899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-CcccHHHHHHHHHHHHHHHHHHHH
Q 000481 1092 MVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL-IPR-GYVAPGLVGLSLSYAFTLTGTQVF 1169 (1467)
Q Consensus 1092 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~-~~~-~~~~~g~~g~~l~~~~~l~~~~~~ 1169 (1467)
..+...++..+...+..+.........---+..+|++..+.+..+++.+.+ ... |.++-...-+++.-+--+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 988887777766665555443333322223345566655555444443322 223 566655555666677788899999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEE
Q 000481 1170 LSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1467)
Q Consensus 1170 ~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIV 1249 (1467)
+...|+.-.+...+.+++..+.+.|.+.+... ......|..+.+|+.+|++++|+++. ++++|+||+++|||++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 99999999999999999999998776643221 11123343345677779999997654 7999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCC-CCHHHHHHHHHH
Q 000481 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL-YSDDEIWKALEK 1328 (1467)
Q Consensus 1250 GrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~-~sd~ei~~aL~~ 1328 (1467)
|+||||||||+++|.|+.+|++|+|.+||+|..+++.+++|+++++|||+|++|+|||||||...+. .+|+||++|+++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975543 789999999999
Q ss_pred cCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEc
Q 000481 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVA 1408 (1467)
Q Consensus 1329 ~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IA 1408 (1467)
+++.+++.. |+||||++||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1409 HRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1409 HRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
||++.+.++|+|+|||+|+++|.|+|++|.+++|.|++|++++..
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987643
No 24
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-74 Score=668.27 Aligned_cols=534 Identities=20% Similarity=0.289 Sum_probs=436.1
Q ss_pred HHHHHhhhhhhHHHHhhcccCc-cchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000481 910 SGFVGLQAAATYWLAYAIQIPK-ITSGIL--IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFF 986 (1467)
Q Consensus 910 ~~~~~~~~~~~~wl~~~~~~~~-~~~~~~--~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ff 986 (1467)
....++...+.|.++...-.+. ...+++ ....-++++...+..|+..++.+....++-..++.++++++...+..-.
T Consensus 30 lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~ 109 (573)
T COG4987 30 LASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALL 109 (573)
T ss_pred HHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 3344555567777765432221 111111 1222355677788889999999999999999999999999999999999
Q ss_pred ccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 987 DSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV-AIFAMVAVRFVQRYYIATARELIRI 1065 (1467)
Q Consensus 987 d~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~r~l~rl 1065 (1467)
.....|+++||+..|++.+|...-..+...+..+...+++.+...+.+|.+.+. .+.+++....+...+.+..|...+.
T Consensus 110 ~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~ 189 (573)
T COG4987 110 LRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAH 189 (573)
T ss_pred HhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 999999999999999999999988888887777777777766676777776543 3333444444455555555666666
Q ss_pred hccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Q 000481 1066 NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLVLIP 1144 (1467)
Q Consensus 1066 ~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~ 1144 (1467)
-...+..+.+++.|.+.|....+.||++++|.+.+.+..+...+..........|-...+.++..+.+.. .........
T Consensus 190 l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~ 269 (573)
T COG4987 190 LAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG 269 (573)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6667788999999999999999999999999999999888888888888888888887777666655442 222222233
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcc-eEEEEEEE
Q 000481 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG-RIELRQLK 1222 (1467)
Q Consensus 1145 ~~~~~~g~~g~~l~~~~~l~~~~~~~~-~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g-~I~f~nvs 1222 (1467)
.|..+.-.+.+++..++.....+.-+. ..+.++.....|.+|+.+..+.++|.... .+. -|..+ .++++||+
T Consensus 270 ~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~-----~~~~~~~l~~~~vs 343 (573)
T COG4987 270 AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-DEQ-----TATTGQALELRNVS 343 (573)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-ccc-----cCCccceeeeccce
Confidence 444442223333333344444444455 55678889999999999998877665432 111 11222 79999999
Q ss_pred EEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcc
Q 000481 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1467)
Q Consensus 1223 ~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1302 (1467)
|+|+.+.++||+|+||++++||||||+||||||||||+++|.|-++|++|+|..+|+|++.++.+++|+.|++++|.+.|
T Consensus 344 F~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 344 FTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred eecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1303 FRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1303 F~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
|+||+|+||..- .+.||||+|+||++++|++++++.|+||||.+||+|.+||||||||++|||+||++.++++|||||.
T Consensus 424 F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTe 503 (573)
T COG4987 424 FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503 (573)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcc
Confidence 999999999532 2489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
+||++||+.|.+.|.+..+|+|+|+||||+..+..||||+|||+|+++|+|+|++|++++|.|++|++
T Consensus 504 gLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 504 GLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred cCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999865
No 25
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-73 Score=729.33 Aligned_cols=509 Identities=21% Similarity=0.354 Sum_probs=450.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
..+++++.++..++.+++.++....+.+....++..+++++++.|.++|++.+.|++++|+++|++.++..+...+..++
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i 136 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLV 136 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777888899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++.+++.++++++.+|.+.++++.++++..++...+.+..++..+......++..+.+.|+++|+.+||+++.++++.
T Consensus 137 ~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~ 216 (571)
T TIGR02203 137 RETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYET 216 (571)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHH
Confidence 88999999999999999998888777777777777777766677666677777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~ 1176 (1467)
+++.+..+...+..........+.....+++..+...+ ..+....+..|.+++|.+..+.+++..+..++..+...+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~ 296 (571)
T TIGR02203 217 RRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAP 296 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776666655555555545444333222 22233445678899999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcH
Q 000481 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1467)
Q Consensus 1177 le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGK 1256 (1467)
+.....+.+|+.++++.+++.+.. ..+.. +..+.|+++||+|+|+++.+++|+|+||+|+|||+|+|+|+|||||
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGK 371 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGK 371 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCH
Confidence 999999999999999876654321 11111 2357899999999997655679999999999999999999999999
Q ss_pred HHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC--CCCHHHHHHHHHHcCCchH
Q 000481 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG--LYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1257 STL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~~sd~ei~~aL~~~~l~~~ 1334 (1467)
|||+++|.|+++|++|+|++||+|+++++.+++|++++|+||||.+|+||||+||..+. +.+|++++++++.++++++
T Consensus 372 STLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~ 451 (571)
T TIGR02203 372 STLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDF 451 (571)
T ss_pred HHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHH
Confidence 99999999999999999999999999999999999999999999999999999997553 5899999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
+.++|+||||+++|+|.+||||||||+|||||++++|+||+||||||+||.+|++.|.+.|++..+++|+|+||||++.+
T Consensus 452 i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~ 531 (571)
T TIGR02203 452 VDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI 531 (571)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
..||+|++|++|+++|.|+|++|+++++.|++++..+
T Consensus 532 ~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 532 EKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred HhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 9999999999999999999999999889999887643
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-73 Score=740.75 Aligned_cols=559 Identities=23% Similarity=0.322 Sum_probs=450.2
Q ss_pred cHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhccc--Cc--cc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PK--IT-SGILIGVYAGVSTASAVFVYFRSFFA 959 (1467)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~--~~-~~~~~~~y~~l~~~~~~~~~~~~~~~ 959 (1467)
+++.++.+++..+.... ..++..++...+..+.++.+....+. +. .. ...+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQFR--EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666553333222 22222223333344455555544432 11 11 11233344555566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000481 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1467)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 1039 (1467)
...+.+....++.++++++++.|+.||++.++|++++|+ +|++.+...+...+..++..++.++..++++++.+|.+.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999887776666665555556667778888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1467)
Q Consensus 1040 ~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1467)
+++..++++..+..+..+..+...+...+..+...+++.|+++|+.+||+||.++.+.+++.+..+...+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444444433333333333333334556778999999999999999999999999999988877776666555555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000481 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1467)
Q Consensus 1120 wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~ 1198 (1467)
+......++..+...+. .+...++..|.++.|.+..+.+++..+..++..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55555554444333222 22334456788999999888999999999999999999999999999999999998876643
Q ss_pred CCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECC
Q 000481 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1467)
Q Consensus 1199 ~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG 1278 (1467)
.. ...+. -+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1279 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
+|+++++.+++|+++++|||||.+|+|||||||...+ +++|+++++|++.+++++++.++|+||||.++|+|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 9999999999999999999999999999999997543 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
|||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|+||++|+++|.|+|++|
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHH
Q 000481 1438 METNSSFSKLVAE 1450 (1467)
Q Consensus 1438 l~~~~~f~~lv~~ 1450 (1467)
++++|.|++|+++
T Consensus 679 ~~~~~~y~~l~~~ 691 (694)
T TIGR01846 679 LALQGLYARLWQQ 691 (694)
T ss_pred HHcCChHHHHHHh
Confidence 9999999999864
No 27
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.7e-73 Score=723.50 Aligned_cols=544 Identities=21% Similarity=0.248 Sum_probs=425.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
++.+.+.+++.+++..++.++..++..+.|++++.++|....+.......+.+++++++..++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888899999999999999999999999753211112222233334444555566666666667778999
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++...+++.++|+++|++++|++++.++.. .+..++...+..++++++++.+-.+.+++.+++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998653 345555555555555555444333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000481 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAY 502 (1467)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i----~~~R~~E~~~l~~~~~~~~~ 502 (1467)
+++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++. ++.++.+.+..+.......+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK11174 173 APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAV 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567788888888899999999999999999999999999998776655 44454444433332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNA---------STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1467)
Q Consensus 503 ~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~---------~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL 573 (1467)
..++..+ + .+.++.++++... +.+|. ..+++++.+...+..|+..++..+..+.+++++.+|+.+++
T Consensus 253 ~~~~~~~-~-~~~~~~~~~~~~~--g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 253 LEFFASI-S-IALVAVYFGFSYL--GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHH-H-HHHHHHHHHHHHh--cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111 1 1122233344333 33333 44555667778889999999999999999999999999999
Q ss_pred cCCCCCCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcE
Q 000481 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1467)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 653 (1467)
+.++.++..............|+++|++|.|+++ +++|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 7654322111100111123469999999887643 57999999999999999999999999999999999999 99999
Q ss_pred EEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
|.++| +|+||||+|++|++||||||.+|++ .++++++++++.|+++++++.+|+|++|.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99988 5999999999999999999999975 899999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
||||||||++||||+++||+|+||||||||||+++++++.+ .+....+++|+|+||||++.++.||+|++|++|+|++.
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999976 55566689999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHh
Q 000481 800 GNYQELLLAGTAFEQLVNAH 819 (1467)
Q Consensus 800 G~~~~l~~~~~~~~~~~~~~ 819 (1467)
|+|+|++++++.|.+++..+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999999999999988654
No 28
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-76 Score=662.06 Aligned_cols=511 Identities=20% Similarity=0.346 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhh
Q 000481 937 LIGVYAGVSTAS------AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIP 1010 (1467)
Q Consensus 937 ~~~~y~~l~~~~------~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~ 1010 (1467)
....|+.+.+++ .++.-+|+++......-+.+.+--.+++++....+.|.-...+|+++.-..+..+.+. .+.
T Consensus 255 ~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~ 333 (790)
T KOG0056|consen 255 LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLE 333 (790)
T ss_pred HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHH
Confidence 344455554433 5666778888888888899999999999999999999999999999888777776666 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccchhHhHHHHHhchhH
Q 000481 1011 FSIVFVAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRFVQ----RYYIATARELIRINGTTKAPVMNYTAETSQGVV 1085 (1467)
Q Consensus 1011 ~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~ 1085 (1467)
..+..+.-.++.+...++..+ ..+|++.++....+.+|.++. .+--+..|.+...+.++ ...-.+++-+..
T Consensus 334 yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nes----rAr~vDsllNFE 409 (790)
T KOG0056|consen 334 YVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNES----RARQVDSLLNFE 409 (790)
T ss_pred HHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhh----hhhhhhhhhcch
Confidence 443334444444444444333 467888877777777776532 22222223332233333 345678899999
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcccHHHHHHHHHHHHHHH
Q 000481 1086 TIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL-VLIPRGYVAPGLVGLSLSYAFTLT 1164 (1467)
Q Consensus 1086 tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~-~~~~~~~~~~g~~g~~l~~~~~l~ 1164 (1467)
|+|-|++|+...++|.+.++..++..+........+...-..+..+......++. +.+..+..+.|..-+..+|.+++.
T Consensus 410 TVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy 489 (790)
T KOG0056|consen 410 TVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLY 489 (790)
T ss_pred hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHh
Confidence 9999999999999999999999988777665555544333333222222222222 233456778888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCc
Q 000481 1165 GTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244 (1467)
Q Consensus 1165 ~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~Ge 1244 (1467)
.+++|+...+..++++.+-.|++.++++.++|-.. .++.||- --.+|+|+|+||+|.|+|+. |||+||||+++||+
T Consensus 490 ~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--~P~a~pl-~~~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGk 565 (790)
T KOG0056|consen 490 MPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--LPGAPPL-KVTQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGK 565 (790)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--CCCCCCc-cccCCeEEEEEeEEecCCCC-ceeecceEEecCCc
Confidence 99999999999999999999999999876555321 1122222 23579999999999999876 49999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHH
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIW 1323 (1467)
Q Consensus 1245 kVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~ 1323 (1467)
.||+|||||+||||++++|+|++|.++|+|.|||+||+++..+.||++||+||||.+||+.||-.||.... ..+|||+.
T Consensus 566 tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneevy 645 (790)
T KOG0056|consen 566 TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVY 645 (790)
T ss_pred EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996322 37899999
Q ss_pred HHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcE
Q 000481 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCT 1403 (1467)
Q Consensus 1324 ~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~T 1403 (1467)
+|.+.+++||-|.++|+|++|.|||+|-.||||||||+|+||++|++|.|++||||||+||..||+.||+++.+..+++|
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RT 725 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRT 725 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHHhcc
Q 000481 1404 VITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWSSCR 1456 (1467)
Q Consensus 1404 vI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~~~~ 1456 (1467)
.|+|||||+||.++|.|+|+++|+|+|.|+|+||++ .+|.|++|++.+..+-+
T Consensus 726 tIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~ 779 (790)
T KOG0056|consen 726 TIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGK 779 (790)
T ss_pred eEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999 48999999976555443
No 29
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.6e-72 Score=702.89 Aligned_cols=546 Identities=23% Similarity=0.335 Sum_probs=456.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
.++..+.-|++.+.-..+..++..+++++.|++.+.++|.+-.. ........++.++.+..+++.++...-.+....++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556777777788888899999999999999999976432 22333344555566666667666655566677899
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQL---FLAIGVLFGVVGLGALPG 423 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i---~~~~~~L~~~lg~~~l~g 423 (1467)
.|+...+...+|+|.+++|..+++++++||+++++. |.++|.++... .....++.+ ++.+++++..-++.+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984 78888887542 223333333 334445555556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000481 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK-AY 502 (1467)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~-~~ 502 (1467)
++.+++.+.+..++.+.+++..++.++...++.+...|.++||++||..+.|+.+..+.++.-.+..+.-.+..... ..
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77667777777888899999999999999999999999999999999999999999888887777766443333222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000481 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1467)
Q Consensus 503 ~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1467)
..+...+..+...+++++|..++.++.+|.|.++++.++...+..|+..+.+....+++++++.+|+.++++.+..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 33333333344455678888888889999999999999999999999999999999999999999999999887654322
Q ss_pred cccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----
Q 000481 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1467)
Q Consensus 583 ~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 658 (1467)
......++..+.|+++|++|+|++++ .++|+|+|++|++||++||||+||||||||+|+|+|+|+|++|+|.++|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 21123344567899999999998764 4799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 ---------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.|+||+|++.+|++||+|||.+|.| .+.|++.++++.++.++++..+|.|++|.|||+|.+||||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 4999999999999999999999998 456899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+||||++++|+|+||||||||||+++++.+.+.+ ....+|+|+|+||||++.+++||+|+||++|+|+++|+|+|+++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNL-LQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999999998765 455678999999999999999999999999999999999999999
Q ss_pred CchHHHHHHH
Q 000481 809 GTAFEQLVNA 818 (1467)
Q Consensus 809 ~~~~~~~~~~ 818 (1467)
+|.|.+++..
T Consensus 698 ~g~y~~l~~~ 707 (709)
T COG2274 698 GGLYARLYQQ 707 (709)
T ss_pred cChHHHHHhc
Confidence 9999988754
No 30
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7.7e-72 Score=712.70 Aligned_cols=544 Identities=20% Similarity=0.270 Sum_probs=435.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhcccC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000481 905 GVLAQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1467)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p 982 (1467)
.++..++..++....++++....+.- ......++.+++++.++..+..++......+...+....+..++++++++.|
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 103 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLP 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344444455556666666554421 1111112333333334444444444555555556666667779999999999
Q ss_pred ccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1467)
Q Consensus 983 ~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l 1062 (1467)
..+|++.+.|++++|+++|++.+.......+..++..++..++.+++++..+|.+.++++.+++++..+.+++.+..++.
T Consensus 104 ~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 183 (588)
T PRK13657 104 LAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDG 183 (588)
T ss_pred HHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877766666666666666667777778888887776666666666677777777777
Q ss_pred HHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1467)
Q Consensus 1063 ~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~ 1141 (1467)
.+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+..++ ..+...
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 263 (588)
T PRK13657 184 QAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAA 263 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766777788999999999999999999999999999888877766554443333333333333332222222 222334
Q ss_pred HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEE
Q 000481 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1467)
Q Consensus 1142 ~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nv 1221 (1467)
.+..|.++.|.+..++.++..+..++..+...+..+.....+.+|+.++.+.+++.+.. ....+.. +..+.|+|+||
T Consensus 264 ~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~~~~v 340 (588)
T PRK13657 264 LVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVEFDDV 340 (588)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999988765442211 1110111 23468999999
Q ss_pred EEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCc
Q 000481 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1467)
Q Consensus 1222 s~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1301 (1467)
+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+||||||.
T Consensus 341 sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 341 SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 9999643 569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 000481 1302 LFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380 (1467)
Q Consensus 1302 LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaT 1380 (1467)
+|+||||+||.... +.+|++++++++.+++++++.++|+|+||.++++|.+||||||||+|||||++++|+||||||||
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999997543 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1381 ASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1381 s~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
|+||++|++.|.+.|++..+++|+|+||||++++..||||++|++|+++|.|+|++|+++++.|++|+.+..
T Consensus 500 s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQG 571 (588)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhh
Confidence 999999999999999988789999999999999999999999999999999999999998999999987653
No 31
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.3e-71 Score=710.84 Aligned_cols=512 Identities=23% Similarity=0.342 Sum_probs=431.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+.+++++.++..++.+.+.++....+.+....++..+++++++.|.++|++...|++++|+++|++.++..+...+..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 140 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556667778888888999999999999999999999999999999999999999999999998888888878
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++.+++.+++++..+|++.++++..+++...+...+.+..+...+.....+....+++.|.++|+.+||+|+.++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~ 220 (576)
T TIGR02204 141 RNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAER 220 (576)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHH
Confidence 88888888888888888887666554444444444444444555555555666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~ 1176 (1467)
+++.+..+...+..........|+.....++..+... ...+....+..|.++.|.+..+..++..+..++..+...+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~ 300 (576)
T TIGR02204 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGE 300 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888876665554444444444333333222211 122223345578899999989999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCC-CcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1177 le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
+.....+.+|+.++.+.++|.+... ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||+++|+|+||||
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsG 378 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAG 378 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCC
Confidence 9999999999999988765532111 11112234457899999999997533 57999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~ 1334 (1467)
||||+++|+|+++|++|+|.+||+|+++++.+++|++|+|+||||.+|+|||||||...+ +.+|++++++++++++.++
T Consensus 379 KSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~ 458 (576)
T TIGR02204 379 KSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEF 458 (576)
T ss_pred HHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999999999999999999999999999999999998543 4789999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
+.++|+|+||+++|+|.+||||||||++||||++++|+|||||||||++|.+|++.|.+.+++..+++|+|+||||++.+
T Consensus 459 i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~ 538 (576)
T TIGR02204 459 ISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV 538 (576)
T ss_pred HHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
..||||++|++|+++|.|+|++|+++++.|++|++.+
T Consensus 539 ~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 539 LKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred HhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 9999999999999999999999999999999988643
No 32
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.9e-72 Score=705.40 Aligned_cols=465 Identities=22% Similarity=0.282 Sum_probs=388.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHH
Q 000481 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1467)
Q Consensus 944 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~ 1023 (1467)
+.++..++.++..++....+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888889999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHH
Q 000481 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1467)
Q Consensus 1024 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~ 1102 (1467)
++.++++++.+|.+.++++..++++.+ ...++.+..+...+......+.+.+++.|+++|+.+||+|+.++.+.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 888888888999887766555444333 3333344444444444456678899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1467)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~ 1181 (1467)
..+...+..........+......++..+..... .+....+..|.++.|.+...+.|+..+..++..+...+..+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877666554444333333332333322222211 222234457889999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHH
Q 000481 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1467)
Q Consensus 1182 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~ 1261 (1467)
.+.+|+.++.+.++|.+... ...+...+|..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998776533211 11111123456789999999999754 35999999999999999999999999999999
Q ss_pred HHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCC
Q 000481 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPN 1340 (1467)
Q Consensus 1262 ~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~ 1340 (1467)
+|+|+|+|++|+|.+||+|++++ .+++|++|+||||||+||+|||||||...+ +.+|||+++|++.+++++++.++|+
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999998643 5799999999999999999999999
Q ss_pred CcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCc
Q 000481 1341 KLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRV 1411 (1467)
Q Consensus 1341 gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl 1411 (1467)
||||+|||+|.+||||||||+|||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 459 GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999988999999999996
No 33
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.9e-71 Score=698.94 Aligned_cols=541 Identities=20% Similarity=0.252 Sum_probs=433.1
Q ss_pred HHHHHHHhhhhhhHHHHhhcccC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000481 908 AQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985 (1467)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~f 985 (1467)
+.++...+.++.++.++..++.- ......++..++++.+...+..++...+......+....++.++++++++.|++|
T Consensus 27 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~ 106 (585)
T TIGR01192 27 ANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSW 106 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33344445555555555444321 1111112222223333344444455555556666667777789999999999999
Q ss_pred cccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 986 FDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRI 1065 (1467)
Q Consensus 986 fd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl 1065 (1467)
|++.++|++++|+++|++.+...+...+..++..++.++..+++++..+|.+.++++.+++++.++.+.+.+..++..+.
T Consensus 107 ~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~ 186 (585)
T TIGR01192 107 HQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAA 186 (585)
T ss_pred hCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777777777777777777778888999988877766667677777777766776666
Q ss_pred hccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 000481 1066 NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALFLVLIP 1144 (1467)
Q Consensus 1066 ~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~~~~~~ 1144 (1467)
.....+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..+.......+......++..+.. ++..+..+++.
T Consensus 187 ~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~ 266 (585)
T TIGR01192 187 VEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVI 266 (585)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999999999999999999999999888887776555443332222222222222222211 12222334456
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC-CCcceEEEEEEEE
Q 000481 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW-PFKGRIELRQLKI 1223 (1467)
Q Consensus 1145 ~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w-p~~g~I~f~nvs~ 1223 (1467)
.|.++.|.+..++.|+..+..++..+...+.++.....+.+|+.++.+.+++.+.. ..+ ..+ +..+.|+|+||+|
T Consensus 267 ~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~-~~~~~~~~~i~~~~v~~ 342 (585)
T TIGR01192 267 KGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADA-PELPNVKGAVEFRHITF 342 (585)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccC-CCCCCCCCeEEEEEEEE
Confidence 78899999888888999999999999999999999999999999998765443211 111 112 2356899999999
Q ss_pred EeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCccc
Q 000481 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1467)
Q Consensus 1224 ~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1303 (1467)
+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||||.+|
T Consensus 343 ~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 421 (585)
T TIGR01192 343 EFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF 421 (585)
T ss_pred ECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC
Confidence 99744 35899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000481 1304 RGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382 (1467)
Q Consensus 1304 ~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~ 1382 (1467)
++|+|+||.... +.+|+|++++++.+++++++.++|+|+||.++++|.+||||||||++|||||+++|+|||||||||+
T Consensus 422 ~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~ 501 (585)
T TIGR01192 422 NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSA 501 (585)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 999999997542 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1383 lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
||.+|++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|++++|.|++|++.+.-
T Consensus 502 LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 502 LDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGL 572 (585)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCcc
Confidence 99999999999999888899999999999999999999999999999999999999999999999876543
No 34
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.8e-71 Score=700.99 Aligned_cols=510 Identities=19% Similarity=0.272 Sum_probs=421.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+++++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+.......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44454555556667777778888889999999999999999999999999999999999999999999876666666666
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHH
Q 000481 1018 ASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f 1096 (1467)
..++..+..++++ +..+|.+.++.+..+++..++.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 6655555544444 467887766655555555555555544444444444455677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
.+++.+..+...+..........+.......+..+. ++...+..+++..|.++.|.+..+..|...+..++..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877665554443333332222222222111 1112222344567889999988888899999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
.+.....+.+|+.++.+.+++.+.. ....+ +.+|.|+|+|++|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 9999999999999999876543211 11111 235689999999999765567999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~ 1334 (1467)
||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||||.+|+||||+||... .+++|++++++++.++++++
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999754 35799999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
+.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++++
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~ 513 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL 513 (569)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887899999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
..||+|++|++|+++|.|+|++|++++|.|++|+....
T Consensus 514 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 514 TEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred HcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 99999999999999999999999999999999987543
No 35
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-71 Score=642.99 Aligned_cols=499 Identities=24% Similarity=0.354 Sum_probs=391.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHH
Q 000481 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1467)
Q Consensus 936 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~ 1015 (1467)
..+..|....+.+.+|..++.+++.....++-+....+.+.+.+...++||.+..+|.+.+....-...+...+.-.+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999999988888877777666666555554
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHc
Q 000481 1016 VAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRF----VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAF 1090 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf 1090 (1467)
++-.++.+......+. -..+.+.++.+.....|.. +.++-.+ .++....+.....+...|++.+-.+||+|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~----fR~~~N~Adn~as~~~~dsL~Nye~VKsf 230 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR----FRKAMNNADNSASRRAYDSLINYEIVKSF 230 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH----HHHHHHhhhhHHHHHHHHHHhhHHHHHHc
Confidence 4444444333332222 2334444443333333321 1111111 11222233344567788999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hccCcccHHHHHHHHHHHHHHHH
Q 000481 1091 NMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVL----IPRGYVAPGLVGLSLSYAFTLTG 1165 (1467)
Q Consensus 1091 ~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~----~~~~~~~~g~~g~~l~~~~~l~~ 1165 (1467)
+.|++..++|...+...-+....... |+++ +++.+..+..+.. ..+++ +..+.++.|..-+..+...++..
T Consensus 231 NnE~~Ea~~y~~~l~~~~~~~~~~~~---sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~ 306 (591)
T KOG0057|consen 231 NNEEYEASRYDGSLKTYERAGLKYSS---SLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSL 306 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhHHh---HHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHh
Confidence 99999999999888766554433333 3332 2333333222221 11222 23446677777777888888999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcE
Q 000481 1166 TQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245 (1467)
Q Consensus 1166 ~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~Gek 1245 (1467)
+++.+...+.++-.++.-.+-.....+.... ..+. +++.-+..|.|+|+||+|.|.|+ ++||+|+||+|++|||
T Consensus 307 ~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~----i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGek 380 (591)
T KOG0057|consen 307 PLNFLGSVYRELRQALTDMRTLFILLEVDED----IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEK 380 (591)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh----hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCE
Confidence 9999999998888877776665543221111 0111 11112345789999999999865 4599999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHH
Q 000481 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWK 1324 (1467)
Q Consensus 1246 VgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~ 1324 (1467)
|||||++||||||++++|+||+| .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|||+.+
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e 459 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVE 459 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999996332 479999999
Q ss_pred HHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEE
Q 000481 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTV 1404 (1467)
Q Consensus 1325 aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~Tv 1404 (1467)
++|+++++|.+.++|+||+|.|||+|.-||||||||++||||+|++|+|+++|||||+||.+||+.|.++|+....++|+
T Consensus 460 ~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTv 539 (591)
T KOG0057|consen 460 ACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTV 539 (591)
T ss_pred HHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1405 ITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1405 I~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
|+|+||++++++||+|+|||+|+++|+|+|+||+++.+.|++++.
T Consensus 540 I~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 540 IMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred EEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 999999999999999999999999999999999997777777654
No 36
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.2e-69 Score=699.90 Aligned_cols=544 Identities=22% Similarity=0.257 Sum_probs=435.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
+++..++.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567778888888899999999999999999999764221 2222233334444445555555555556677889
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~ 425 (1467)
.++...++..+|+|.++++...+++.++|+++++++ |++.+.++... +.......+..++++++++..-++.+++.++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 78888875432 2222222222334445555554555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000481 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GT 504 (1467)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~ 504 (1467)
++++..++...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++..++..+...+....... ..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667788888888999999999999999999999999999999888777666555544433332222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 000481 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 584 (1467)
+...+..+...++.++|.+++.++.+|.|.++++.+++..+..|+..++..+..+++++++++|+.++++.++..+...
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~- 442 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-
Confidence 2222222333444555666666789999999999999999999999999999999999999999999997654322111
Q ss_pred cccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 000481 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1467)
Q Consensus 585 ~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 658 (1467)
.......+.|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 443 -~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 443 -TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520 (686)
T ss_pred -CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC
Confidence 1111223579999999999754 36799999999999999999999999999999999999999999999988
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
.|+||||+|++|++||+|||.+|++.+++++.++++.|+++++++.+|+|++|.+||+|.+||||||||++||
T Consensus 521 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred CHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 4999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCch
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~ 811 (1467)
||++++|+|+|||||||+||+++++++.+.+.+ . ++|+|+||||++.++.||+|++|++|+|++.|+|+|+++.++.
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~ 677 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLER-L--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGL 677 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-h--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 999999999999999999999999999876543 2 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000481 812 FEQLVNA 818 (1467)
Q Consensus 812 ~~~~~~~ 818 (1467)
|.++++.
T Consensus 678 y~~l~~~ 684 (686)
T TIGR03797 678 FAQLARR 684 (686)
T ss_pred HHHHHHh
Confidence 9888753
No 37
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.7e-70 Score=686.29 Aligned_cols=482 Identities=20% Similarity=0.255 Sum_probs=400.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHH
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~ 1016 (1467)
+.+.++++.++..++.+++.++....+.+...+++.++++++++.|..||++.++|++++|+++|++.++..+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566677778888999999999999999999999999999999999999999999999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHH
Q 000481 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1467)
Q Consensus 1017 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f 1096 (1467)
+..++.++..+++++..+|.+.++++..+++..++...+.+..+...+......+...+++.|+++|+.+||+|+.++++
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 205 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQ 205 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHH
Confidence 77777777777788888887765554433333333333333333333333344556788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
.+++.+..+...+..........+......++..+..+.. .+..+.+..|.++.|.+..++.|+..+..++..+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~ 285 (529)
T TIGR02857 206 AAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYH 285 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888777666555444444444444444443333222 222233347789999888888888889999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
.+.....+.+|+.++.+.+++... . .+...+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 286 ~~~~~~~~~~ri~~ll~~~~~~~~---~--~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsG 360 (529)
T TIGR02857 286 ARADGVAAAEALFAVLDAPRPLAG---K--APVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAG 360 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCC---C--cCCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCC
Confidence 999999999999999975543221 1 11112234689999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~ 1334 (1467)
||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+|||||||.... ..+|+++++|++.++++++
T Consensus 361 KSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~ 440 (529)
T TIGR02857 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEF 440 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999999999999999999999999999999999997543 5789999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
++++|+||||.+||+|.+||||||||++||||++++|+|||||||||+||++|++.|++.+++..+++|+|+||||++++
T Consensus 441 i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 441 VAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALA 520 (529)
T ss_pred HHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cccCEEEEE
Q 000481 1415 IDSDMVMVL 1423 (1467)
Q Consensus 1415 ~~~DrIlVl 1423 (1467)
..||+|+||
T Consensus 521 ~~~d~i~~l 529 (529)
T TIGR02857 521 ERADRIVVL 529 (529)
T ss_pred HhCCEEEeC
Confidence 999999986
No 38
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-72 Score=627.11 Aligned_cols=489 Identities=20% Similarity=0.320 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhH
Q 000481 957 FFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVTW 1035 (1467)
Q Consensus 957 ~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~-~~~~ 1035 (1467)
.++...+..+-+.+--+.|.++.+..+.|.-+..+|-+..-...-..-++..+.+.+...+-.++.+....+++. ...|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 344555666777777788889999999998877666544333333333444444445555555555544444444 4578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1036 QVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTN 1115 (1467)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~ 1115 (1467)
++..+.+..+++|.++.-....-.-..+|.-..+.+...+...+++-+-.|++.||.|+.+..+|...++...+......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 88887777777766544333333334455555566677788899999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Q 000481 1116 GVMEWLILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194 (1467)
Q Consensus 1116 ~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~ 1194 (1467)
....|+.+.-..+.......... ...-+..+.++.|.....-.+..+++.+++++...+.++.+.....|++.+..+.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 77777776544433322211111 11234567899999999999999999999999999999999999999999998876
Q ss_pred CCCCCCcCCCCCCCCCC-CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcce
Q 000481 1195 PEPPAIVEDKRPPSSWP-FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273 (1467)
Q Consensus 1195 ~e~~~~~~~~~~~~~wp-~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~ 1273 (1467)
.|-. +....|+-|| ..|.|.|+||+|.|.|.. ++|+|+||++++|+++||||++|+||||+..+|+|||++++|+
T Consensus 244 ~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 244 AEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred hhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 6542 2223445575 458899999999998776 5999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCC
Q 000481 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352 (1467)
Q Consensus 1274 I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~n 1352 (1467)
|.|||.||.++..+.||+.||+||||.+||+.|+..|+...+ ..+++|+++|++.++++++++++|+||||.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 999999999999999999999999999999999999996433 4799999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEec
Q 000481 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1353 LS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g 1432 (1467)
||||||||+++||++|++|+||+||||||+||..||+.||.+|++.++++|.++|||||+||.|+|.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhccCChhHHHHH
Q 000481 1433 EPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1433 ~p~~Ll~~~~~f~~lv~ 1449 (1467)
+|+||++++|.|++|+.
T Consensus 480 ~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAAGGLYAEMWR 496 (497)
T ss_pred cHHHHHHcCChHHHHhc
Confidence 99999999999999864
No 39
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.9e-69 Score=700.00 Aligned_cols=542 Identities=19% Similarity=0.237 Sum_probs=437.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
+..++.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIK 224 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888899999999999999998654322 111222333344444555556555556677888999
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1467)
+...++..+|+|.++++...+++.++|+++++++.| +.+.++.. .+.......+.+++.+++++..-++.+++.++.+
T Consensus 225 ~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 303 (710)
T TIGR03796 225 LAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303 (710)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 67776543 3344444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVI 506 (1467)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~ 506 (1467)
++...+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..+++.+...+....... ..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (710)
T TIGR03796 304 AINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLP 383 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556667778888888888999999999999999999999999999999998888777766654443322222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc---
Q 000481 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV--- 583 (1467)
Q Consensus 507 ~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~--- 583 (1467)
.....+...++.++|.+++.++.+|.|.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 384 ~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 463 (710)
T TIGR03796 384 TLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEA 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 22222333344555666666689999999999999999999999999999999999999999999997654322111
Q ss_pred -c-cccc-cCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--
Q 000481 584 -R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1467)
Q Consensus 584 -~-~~~~-~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 658 (1467)
. .... ....+.|+++|++|+|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 464 PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 0 0111 1224579999999999854 36799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 -----------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.|+||||+|++|++||||||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 4999999999999999999999864 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
||+||||++++|+|+|||||||+||+++++++++.+.. .++|+|+||||++.+..||+|++|++|+|++.|+|+|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999876643 589999999999999999999999999999999999999
Q ss_pred hcCchHHHHH
Q 000481 807 LAGTAFEQLV 816 (1467)
Q Consensus 807 ~~~~~~~~~~ 816 (1467)
+.++.|.+++
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 9988888765
No 40
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.3e-69 Score=695.72 Aligned_cols=539 Identities=21% Similarity=0.240 Sum_probs=419.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1467)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 351 (1467)
.+.+++.++...++.++..++.++.|+++..++|.+...... ..-...+..+++..++..++.....+...+.+.++..
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 234 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP-PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINL 234 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677778888899999999999999999977532211 1111111122222222333332223334456666667
Q ss_pred HHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1467)
Q Consensus 352 ~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~ 430 (1467)
.++..+|++.++.+...+++.++|+++|++++|++.+.+... .+..++...+.+++++++++..-+..+++.++.+++.
T Consensus 235 ~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~ 314 (711)
T TIGR00958 235 RIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLV 314 (711)
T ss_pred HHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777888999999999999999999999999999999987543 3555566666666666666655444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YWM 509 (1467)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~-~~~ 509 (1467)
..+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++.++..++..+..++........... ..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (711)
T TIGR00958 315 FLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVL 394 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888999999999999999999999998866655554443332222221111111111 111
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 000481 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1467)
Q Consensus 510 ~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1467)
..+...++.+++.+++.++.+|+|.+++++.+...+..|+..++..+..+.+++++.+|+.++++.++..++... ..+.
T Consensus 395 ~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~ 473 (711)
T TIGR00958 395 GMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAPL 473 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-CCCC
Confidence 112222334455555656899999999999999999999999999999999999999999999976543321111 1111
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 000481 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1467)
Q Consensus 590 ~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 658 (1467)
+..+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 474 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 474 NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 234579999999999865456899999999999999999999999999999999999999999999988
Q ss_pred --eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|+||||+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++||||++
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 5999999999999999999999965 6788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 815 (1467)
++|+|+|||||||+||+++++.+.+ ....+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++++.|+++
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999999999876 2234789999999999999999999999999999999999999988888764
No 41
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.5e-68 Score=690.06 Aligned_cols=536 Identities=21% Similarity=0.278 Sum_probs=430.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
++...+.+++.+....++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888889999999999999999999764221 22222233333444444555555555566778889
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++... .+.++|++++++ +|++.+.++... +.......+.+++.+++++..-++.+++.+++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 294 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVA 294 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999887 678999999999 799999886542 22223333334444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000481 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TV 505 (1467)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~-~~ 505 (1467)
+++..++...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+........ .+
T Consensus 295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (694)
T TIGR03375 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF 374 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666778888889999999999999999999999999999999999998888877776655444433322222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 000481 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1467)
Q Consensus 506 ~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1467)
...+..+...+++++|.+++.++.+|+|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+.....
T Consensus 375 ~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~ 454 (694)
T TIGR03375 375 AQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF 454 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 22222222333445565666668999999999999999999999999999999999999999999999775432211111
Q ss_pred ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 000481 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1467)
Q Consensus 586 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 658 (1467)
...+...+.|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~ 533 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID 533 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC
Confidence 1111234579999999999743 45799999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
.|+||||+|++|++||+|||.++++ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 5999999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++++|+++|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999765 4555678999999999999999999999999999999999999754
No 42
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1e-67 Score=688.18 Aligned_cols=542 Identities=24% Similarity=0.277 Sum_probs=426.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
...+.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+.+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRL 227 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777788888899999999999999998654322 2222222333333444455555555556677888899
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++++...+++.++|+++++++ |++.+.++... ........+.+++.+++++..-++.+++.+++++
T Consensus 228 ~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 228 SIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 89988875432 2222223333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~~~~ 507 (1467)
+...+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+...... ...+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677888888899999999999999999999999999999998877776665544333222211111 111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1467)
....+...+++++|.+++.++.+|+|.++++.+++..+..|+..+...+..+.+++++++|+.++++.++..++......
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~ 466 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTE 466 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC
Confidence 12222233344556666667899999999999999999999999999999999999999999999976543221111011
Q ss_pred ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 588 ~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
.....+.|+++|++|+|++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 467 ~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 467 LNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred CCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHH
Confidence 1223457999999999964 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++||+|||.+|. ..+++++.++++.++++++++.+|+|++|.|||+|.+||||||||++|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 499999999999999999999983 47889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+|||||||+||+++++++.+.+.. .+++|+|+||||++.+..||+|++|++|++++.|+|+|+++.++.|
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcH
Confidence 99999999999999999999999999876654 3689999999999999999999999999999999999999988888
Q ss_pred HHHHH
Q 000481 813 EQLVN 817 (1467)
Q Consensus 813 ~~~~~ 817 (1467)
.++++
T Consensus 703 ~~l~~ 707 (708)
T TIGR01193 703 ASLIH 707 (708)
T ss_pred HHHhh
Confidence 88753
No 43
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.1e-67 Score=669.87 Aligned_cols=545 Identities=17% Similarity=0.218 Sum_probs=427.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
.+++.+++.++...++.++..++..+.|++++.+++....... ......++..+++..++..++.....+...+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 18 PTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD-RSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677777777778889999988886543221 111111222222233344444444445566788888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++++...+++.++|++++++++|++.+.+... .+..++..++.+++.+++++.+-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999987543 34455566666666666666555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~~~~ 507 (1467)
+...+...+.+.+++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+...... ......
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677788888888889999999999999999999999999987777666555443333222222211 111222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1467)
.+..+...++.+++.+.+.++.+++|.+.++++++..+..|+..+...+..+.+++.+++|+.++++.++.++... ..
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~ 334 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cC
Confidence 2222333333444445555589999999999999999999999999999999999999999999987654322111 11
Q ss_pred ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 588 ~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
..+..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 335 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 12223469999999999754 36799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|.+|++||+|||.+|++ +++++++++++.++++++++.+|+|++|.+||+|.+||||||||++|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999999999999999863 7899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+||||||||||+++++.+++.+ ....+++|+|+||||++.++.||+|++|++|+|++.|+|+++++.++.|
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l-~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 999999999999999999999999987655 4445689999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 000481 813 EQLVNAH 819 (1467)
Q Consensus 813 ~~~~~~~ 819 (1467)
++++..+
T Consensus 573 ~~l~~~~ 579 (582)
T PRK11176 573 AQLHKMQ 579 (582)
T ss_pred HHHHHHH
Confidence 9987643
No 44
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.8e-68 Score=724.30 Aligned_cols=546 Identities=17% Similarity=0.228 Sum_probs=430.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhcccC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1467)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il 979 (1467)
+++.+++.++..++.++.++.++..++.- ......+...+++++++..++.+++.++....+.+..++++.+++++++
T Consensus 62 ~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll 141 (1466)
T PTZ00265 62 LGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVF 141 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555544421 1122234455666677778889999999999999999999999999999
Q ss_pred cccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1467)
Q Consensus 980 ~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 1059 (1467)
+.|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.+.++++.++++++++...+.+..
T Consensus 142 ~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~ 221 (1466)
T PTZ00265 142 YQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKV 221 (1466)
T ss_pred CCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776665555555555555555
Q ss_pred HHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000481 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-L 1138 (1467)
Q Consensus 1060 r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~ 1138 (1467)
+...+......+...+.+.|+++|++|||+|+.|+++.++|.+..+...+..........+......++..+....+. +
T Consensus 222 ~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (1466)
T PTZ00265 222 KINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWY 301 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556788999999999999999999999999998877766655444333222222122222111111111 1
Q ss_pred HHHHhccC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC
Q 000481 1139 FLVLIPRG--------YVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW 1210 (1467)
Q Consensus 1139 ~~~~~~~~--------~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w 1210 (1467)
...++..+ .+++|.+...+.+.+.....+..+...+..+.....|.+|+.+.++.+++.+.. .+ ....
T Consensus 302 G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~ 377 (1466)
T PTZ00265 302 GTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKL 377 (1466)
T ss_pred HHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccC
Confidence 11222222 345554443333333333344455667788889999999999999876653211 11 1112
Q ss_pred CCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEE-CCeeCCCCCHHH
Q 000481 1211 PFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMGLKD 1288 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~I-DG~dI~~i~l~~ 1288 (1467)
|..+.|+|+||+|+|+.. ..++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++ ||.|+++++.++
T Consensus 378 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 378 KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHH
Confidence 334589999999999643 236999999999999999999999999999999999999999999999 579999999999
Q ss_pred HhhccEEeccCCcccccchHHhcCCC------------------------------------------------------
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL------------------------------------------------------ 1314 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~------------------------------------------------------ 1314 (1467)
+|++|++|||||.||++||++||...
T Consensus 458 lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 99999999999999999999999631
Q ss_pred ----CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q 000481 1315 ----GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390 (1467)
Q Consensus 1315 ----~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~ 1390 (1467)
...+|+++++|++.+++++++.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 1257889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCC------------------------------------------
Q 000481 1391 LQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYG------------------------------------------ 1426 (1467)
Q Consensus 1391 Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G------------------------------------------ 1426 (1467)
|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKI 697 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 999999875 489999999999999999999999986
Q ss_pred -----EEEEecChhHHhc-cCChhHHHHHHH
Q 000481 1427 -----KLLEYDEPSKLME-TNSSFSKLVAEY 1451 (1467)
Q Consensus 1427 -----~ivE~g~p~~Ll~-~~~~f~~lv~~~ 1451 (1467)
+|+|+|+|+||++ ++|.|+.|++.+
T Consensus 698 ~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 698 NNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred ccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 5999999999998 799999999654
No 45
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-69 Score=644.39 Aligned_cols=462 Identities=25% Similarity=0.422 Sum_probs=357.3
Q ss_pred cEEEEeEEEEeCCCCC-CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC----CcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~----~G~i~~~g---------- 658 (1467)
-++++|.+..|..... .++++||||++.+||++||||.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999875532 25999999999999999999999999999999999999987 79998876
Q ss_pred -------eEEEEccCCc-CCC--CCHHHHHh----cCCCC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCcc
Q 000481 659 -------SIAYVSQTSW-IQS--GSIRDNIL----YGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1467)
Q Consensus 659 -------~i~yv~Q~~~-l~~--~ti~eNi~----~g~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 720 (1467)
.|||++|+|+ .+| .||.+-|. ..... ..++..+.++..++.+.... ......|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4999999986 344 36665554 22222 12334445555555443332 3456799
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeE
Q 000481 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1467)
Q Consensus 721 SGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1467)
||||||||.||+|+..+|+++|+||||+|||+.++++|.+.+.... ..|.++|+|||++..+.+ ||+|+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999987555443 358899999999999876 89999999999999
Q ss_pred ecChHHHHhcCch-HHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHH
Q 000481 799 SGNYQELLLAGTA-FEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1467)
Q Consensus 799 ~G~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1467)
.|+.++++.+... |.+-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~L------------------------------------------------------------- 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL------------------------------------------------------------- 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH-------------------------------------------------------------
Confidence 9999998754210 00000
Q ss_pred HhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000481 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSF 957 (1467)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 957 (1467)
+. ..|...
T Consensus 255 ---------------l~---------------------------------a~p~~~------------------------ 262 (539)
T COG1123 255 ---------------LA---------------------------------AVPRLG------------------------ 262 (539)
T ss_pred ---------------Hh---------------------------------hCCCcc------------------------
Confidence 00 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000481 958 FAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQV 1037 (1467)
Q Consensus 958 ~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 1037 (1467)
T Consensus 263 -------------------------------------------------------------------------------- 262 (539)
T COG1123 263 -------------------------------------------------------------------------------- 262 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1038 LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGV 1117 (1467)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~ 1117 (1467)
..
T Consensus 263 -----------------------------~~------------------------------------------------- 264 (539)
T COG1123 263 -----------------------------DE------------------------------------------------- 264 (539)
T ss_pred -----------------------------cc-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCC
Q 000481 1118 MEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP 1197 (1467)
Q Consensus 1118 ~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~ 1197 (1467)
. + ...+.+.
T Consensus 265 ---------------------------~----------------------------------------~----~~~~~~~ 273 (539)
T COG1123 265 ---------------------------K----------------------------------------I----IRLPRRG 273 (539)
T ss_pred ---------------------------c----------------------------------------c----ccccccc
Confidence 0 0 0000000
Q ss_pred CCCcCCCCCCCCCCCcceEEEEEEEEEeCC---------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1198 PAIVEDKRPPSSWPFKGRIELRQLKIRYRP---------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1198 ~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
+ . +...-++++|++.+|.. +...+++||||++++||.+||||.||||||||.++|+|+.+
T Consensus 274 ~--------~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 274 P--------L---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred c--------c---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 0 01225889999999963 12468999999999999999999999999999999999999
Q ss_pred CCcceEEECCee--CCCCCHHHHhhccEEeccCCccc---ccchHHhcC-CCCCC-------CHHHHHHHHHHcCCch-H
Q 000481 1269 PAGGSILIDGVD--ICSMGLKDLRVKLSIIPQEPTLF---RGSVRTNLD-PLGLY-------SDDEIWKALEKCQLKT-T 1334 (1467)
Q Consensus 1269 ~~~G~I~IDG~d--I~~i~l~~LR~~i~iIpQdp~LF---~gTIR~NLd-p~~~~-------sd~ei~~aL~~~~l~~-~ 1334 (1467)
|++|+|.+||.| .+.-....+|+++-+|.|||+-. ..||+++|. |...+ .++.+-+.|++++|.+ +
T Consensus 343 P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~ 422 (539)
T COG1123 343 PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF 422 (539)
T ss_pred CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH
Confidence 999999999977 33333566889999999999733 459999983 43311 1234777799999885 4
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCch
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVP 1412 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ 1412 (1467)
....|. .||||||||+||||||..+|++||+|||||+||+-+.+.|-+.|++.- -|.|.|+|+|++.
T Consensus 423 l~ryP~-----------elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 423 LDRYPH-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred HhcCch-----------hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 444443 589999999999999999999999999999999999999999887643 3789999999999
Q ss_pred hhcc-cCEEEEEeCCEEEEecChhHHhc-cCChhHHHH
Q 000481 1413 TVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLV 1448 (1467)
Q Consensus 1413 ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv 1448 (1467)
.+.. ||||+||++|+|+|.|+.+++.+ ++..|.+..
T Consensus 492 vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 492 VVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred HHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 9987 99999999999999998888888 566665443
No 46
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.3e-67 Score=664.95 Aligned_cols=491 Identities=18% Similarity=0.214 Sum_probs=398.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhH-HHHH
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF-SIVF 1015 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~-~l~~ 1015 (1467)
++.+++++.++..++.+++.++....+.+....++.++++++++.|+.. .|...+++++|++.+...+.. .+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555556667788888899999999999999999999999999843 366789999999999887665 3444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHH
Q 000481 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1095 (1467)
++..++.++. +++++..+|++.++++..+++...+..+..+..+...+...+..+...+++.|+++|+.+||+|+.++.
T Consensus 123 ~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 123 FFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 4444444433 356677788776554433333333333333333333344445566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1467)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~ 1174 (1467)
+.+++.+..++..+..........+......++..+. +++..+..+++..|.+++|.+..++.+...+..++..+...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~ 281 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGW 281 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877765554433322222222222222221 112223334456788999999889999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCC
Q 000481 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254 (1467)
Q Consensus 1175 ~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGs 1254 (1467)
.++.....+.+|+.++.+.+++.+. ....+ +.++.|+++||+|+|+++.+++|+|+||+|+|||++||||+|||
T Consensus 282 ~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGs 355 (544)
T TIGR01842 282 KQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGS 355 (544)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCC
Confidence 9999999999999999987655321 11111 23468999999999976556799999999999999999999999
Q ss_pred cHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCch
Q 000481 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKT 1333 (1467)
Q Consensus 1255 GKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~ 1333 (1467)
|||||+++|.|+++|++|+|.+||+|+.+++.+.+|++++++||||.+|+||+|+|+..++ .++|++++++++.+++++
T Consensus 356 GKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~ 435 (544)
T TIGR01842 356 GKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHE 435 (544)
T ss_pred CHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHH
Confidence 9999999999999999999999999999999999999999999999999999999997554 379999999999999999
Q ss_pred HHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch
Q 000481 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVP 1412 (1467)
Q Consensus 1334 ~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ 1412 (1467)
+++++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.+++.. +++|+|+||||++
T Consensus 436 ~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 436 LILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515 (544)
T ss_pred HHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 6899999999999
Q ss_pred hhcccCEEEEEeCCEEEEecChhHHhc
Q 000481 1413 TVIDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1413 ti~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++..||+|++|++|+++|.|+|++|++
T Consensus 516 ~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 516 LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999975
No 47
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.9e-66 Score=660.40 Aligned_cols=536 Identities=24% Similarity=0.336 Sum_probs=419.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1467)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 354 (1467)
++ .+..+.++.++..++....|.++..+++..... ......+...+++..++..+......+...+.+.++...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 777788888888999999999999998876511 11111222222222233344444444555566688888888
Q ss_pred HHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWS-LALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433 (1467)
Q Consensus 355 ~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~-~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~ 433 (1467)
..+|+|.++++...++++++|++++++++|++.+............ .++.++..+++++..-...+++.+++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 168 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999886654322222 233333333333332222233333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000481 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW-LSEAQLRKAYGTVIYWMSPT 512 (1467)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~-l~~~~~~~~~~~~~~~~~~~ 512 (1467)
...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++.++..+...+. .+.................+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (567)
T COG1132 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566788888888889999999999999999999999986655544443333222 12222222222333344444
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCC
Q 000481 513 IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1467)
Q Consensus 513 ~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1467)
....+.+.+...+..+.+++|.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++...+.... .....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~ 326 (567)
T COG1132 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTI 326 (567)
T ss_pred HHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCC
Confidence 4555556666666667899999999999999999999999999999999999999999999875432211111 12334
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.|+|+|++|+|++ ++++|+|+||++++||.+|||||+|||||||+++|+|+++|++|+|.++| +
T Consensus 327 ~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 327 GSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred CeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 67999999999975 35799999999999999999999999999999999999999999999987 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
|+||||+|++|++||+|||.+|++ .+++++.++++.++++++++.+|+|++|.|||+|.+||||||||++||||+++||
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988 6899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
+|++||||||+||+++++.+.+.+. ...++||+|+|+||++.+.+||+|+||++|+|++.|+|+||++.++.|.++++.
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~ 563 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA 563 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999876554 445789999999999999999999999999999999999999999999999876
Q ss_pred h
Q 000481 819 H 819 (1467)
Q Consensus 819 ~ 819 (1467)
+
T Consensus 564 ~ 564 (567)
T COG1132 564 Q 564 (567)
T ss_pred h
Confidence 4
No 48
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.6e-66 Score=660.42 Aligned_cols=544 Identities=19% Similarity=0.260 Sum_probs=437.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
.+.+.+++.+++..++.++..++....|+++..+++...... .....+.+++++++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888899999999999999998887543221 1111122222333344444555444556677888888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++.+...+++.+.|++++++++|++++.++.. .+..++...+.+++++++++.+-++.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999987653 34555556666666666666655555555445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~~~~ 507 (1467)
+...+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+...... ...+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666778888888999999999999999999999999999999998877777666555443332222222 122222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1467)
....+...++.++|.+++.++.+|+|.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..+... ..
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~ 323 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RA 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CC
Confidence 2222333344455555566689999999999999999999999999999999999999999999997654332111 11
Q ss_pred ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 588 ~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
.....+.|+++|++|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 11234579999999999754 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++|+||||.+++ +.++++++++++.|++++++..+|+|.+|.+|++|.+||||||||++|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 499999999999999999999996 48899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|++||||||+||+++++++.+.+ ....+++|+|+||||.+.+..||+|++|++|++++.|+|+++++.++.|
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L-~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~ 561 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLY 561 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHH
Confidence 999999999999999999999999997655 4445789999999999999999999999999999999999999888888
Q ss_pred HHHHHH
Q 000481 813 EQLVNA 818 (1467)
Q Consensus 813 ~~~~~~ 818 (1467)
.++.+.
T Consensus 562 ~~~~~~ 567 (571)
T TIGR02203 562 AQLHNM 567 (571)
T ss_pred HHHHHH
Confidence 887653
No 49
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.9e-66 Score=656.19 Aligned_cols=542 Identities=21% Similarity=0.243 Sum_probs=418.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
+.+.+++.++++.++.++..++..+.|.+++.+++... .+.. .....+..++++++..++..+......+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888889999999999999999998542 2210 00111111222333344455555555566778889
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++...+++.++|++++++++|++.++++... +..+....+.+++++++++.+-...+++.+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986543 34444455555555555544333333322222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 427 FLICG-LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGT 504 (1467)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~ 504 (1467)
+++.. .+...+.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++.++..++..+...+...... ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 2234456667777888888899999999999999999999999988877766655543332222221111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 000481 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~-l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 583 (1467)
+...+......++.+++..++ ++.++.+.+++++.+... ...|+..++..+..+.++.+|.+|+.++++.++..++..
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 222233333334445555554 478899998888777544 356888899999999999999999999997654321111
Q ss_pred ccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 000481 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1467)
Q Consensus 584 ~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----- 658 (1467)
. .......+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 329 T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 1 1111233579999999999753 35799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 --------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.|+||||+|++|++||+|||.+|.+ .+++++.++++.++++++++. |+|++|.+||+|.+||||||||++
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 3999999999999999999999975 688999999999999999999 999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||||++++|+++|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.+
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 99999999999999999999999999998765 44555789999999999999999999999999999999999999999
Q ss_pred chHHHHHH
Q 000481 810 TAFEQLVN 817 (1467)
Q Consensus 810 ~~~~~~~~ 817 (1467)
+.|+++++
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 99998864
No 50
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-66 Score=659.58 Aligned_cols=542 Identities=18% Similarity=0.260 Sum_probs=418.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
+.+.+++.++...++.++..++.++.|+++..++|..... .........++.++++..++..++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888888999999999999999865322 111111112222233334444555555556677888888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++.+...+++.++|+++|++++|++.+.+.... +..+....+.+++++++++..-++.+++.+++++
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999875443 2233333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW-LSEAQLRKAY-GTVI 506 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~-l~~~~~~~~~-~~~~ 506 (1467)
+.+.+.....+..++..++.++..++..+...|.++|+++||.|+.|+.+.++..+..++..+. .+........ ..+.
T Consensus 177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (592)
T PRK10790 177 AVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLL 256 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666677777777888888999999999999999999998888777765543332 2211111111 1111
Q ss_pred HHHHHHHHH-HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 000481 507 YWMSPTIIS-SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1467)
Q Consensus 507 ~~~~~~~~~-~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1467)
.....++.. ++.+.++ ...+.++.+.+++++.++..+..|+..++.....+.++..+.+|+.++++.++.+... .
T Consensus 257 ~~~~~~~~~~~~~~~~~--~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~- 332 (592)
T PRK10790 257 SLFSALILCGLLMLFGF--SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D- 332 (592)
T ss_pred HHHHHHHHHHHHHHHHH--HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C-
Confidence 111111111 1222233 2357899999999999999999999999999999999999999999999765432211 1
Q ss_pred ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 000481 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1467)
Q Consensus 586 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 658 (1467)
......+.|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 333 -~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 409 (592)
T PRK10790 333 -DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS 409 (592)
T ss_pred -ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC
Confidence 11122356999999999974 25799999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|+||||+|++|++||+|||.+|++.+++++.+++++++++++++.+|+|++|.+||+|.+||||||||++|||
T Consensus 410 ~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 410 HSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred HHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 39999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+|||||||+||+++++++.+.+ ....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.++.|
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l-~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y 568 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRY 568 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHH
Confidence 999999999999999999999999987654 4455689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 000481 813 EQLVNAHR 820 (1467)
Q Consensus 813 ~~~~~~~~ 820 (1467)
+++++.+.
T Consensus 569 ~~l~~~~~ 576 (592)
T PRK10790 569 WQMYQLQL 576 (592)
T ss_pred HHHHHHHh
Confidence 99887553
No 51
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-68 Score=676.02 Aligned_cols=483 Identities=24% Similarity=0.380 Sum_probs=356.6
Q ss_pred CcEEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
..++++|++++|.... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3689999999996322 24799999999999999999999999999999999999999999987643
Q ss_pred --------------eEEEEccCC--cCC-CCCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccc
Q 000481 659 --------------SIAYVSQTS--WIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1467)
Q Consensus 659 --------------~i~yv~Q~~--~l~-~~ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~i 713 (1467)
.||||+|+| -++ ..||+|||.++. ..+. ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 489999998 354 469999998752 1222 234445555554210 0122
Q ss_pred cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEE
Q 000481 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVL 791 (1467)
Q Consensus 714 g~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l 791 (1467)
.....+|||||||||+||||++.+|++|||||||++||+.+.+.+.+.+.....+ |+|+|+|||+++.+.. ||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3567799999999999999999999999999999999999999987654443333 8999999999999865 8999999
Q ss_pred eCCeEeEecChHHHHhcCc-hHH-HHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccc
Q 000481 792 EGGQITQSGNYQELLLAGT-AFE-QLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKG 869 (1467)
Q Consensus 792 ~~G~i~~~G~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1467)
++|+|++.|+++++..... .|. .+... .+.. .
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~~----------------------------~~~~-------~----------- 276 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLAA----------------------------VPQL-------G----------- 276 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhhc----------------------------cCcc-------c-----------
Confidence 9999999999877643210 000 00000 0000 0
Q ss_pred cCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHH
Q 000481 870 LTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASA 949 (1467)
Q Consensus 870 ~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~ 949 (1467)
+. .|..
T Consensus 277 -------~~--~~~~----------------------------------------------------------------- 282 (623)
T PRK10261 277 -------AM--KGLD----------------------------------------------------------------- 282 (623)
T ss_pred -------cc--cccc-----------------------------------------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000481 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGI 1029 (1467)
Q Consensus 950 ~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~ 1029 (1467)
.| ++ .+.
T Consensus 283 -------------------------------~~---------~~---------------~~~------------------ 289 (623)
T PRK10261 283 -------------------------------YP---------RR---------------FPL------------------ 289 (623)
T ss_pred -------------------------------CC---------cc---------------ccc------------------
Confidence 00 00 000
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHH
Q 000481 1030 MTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDAS 1109 (1467)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~ 1109 (1467)
....
T Consensus 290 -----------------------------------~~~~----------------------------------------- 293 (623)
T PRK10261 290 -----------------------------------ISLE----------------------------------------- 293 (623)
T ss_pred -----------------------------------cccc-----------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000481 1110 LFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1467)
Q Consensus 1110 ~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~ 1189 (1467)
....
T Consensus 294 ----------------------------------~~~~------------------------------------------ 297 (623)
T PRK10261 294 ----------------------------------HPAK------------------------------------------ 297 (623)
T ss_pred ----------------------------------cccc------------------------------------------
Confidence 0000
Q ss_pred hhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCC---------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHH
Q 000481 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPN---------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260 (1467)
Q Consensus 1190 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~ 1260 (1467)
..+.+.+ .. .+ +...-++++|++++|... ...+|+||||+|++||++||+|+||||||||+
T Consensus 298 --~~~~~~~----~~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLl 367 (623)
T PRK10261 298 --QEPPIEQ----DT-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG 367 (623)
T ss_pred --cCccccc----cc-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHH
Confidence 0000000 00 00 011249999999999521 13599999999999999999999999999999
Q ss_pred HHHhcccCCCcceEEECCeeCCCCCHH---HHhhccEEeccCC--cccc-cchHHhcC-CC---CCCC----HHHHHHHH
Q 000481 1261 SALFRLVEPAGGSILIDGVDICSMGLK---DLRVKLSIIPQEP--TLFR-GSVRTNLD-PL---GLYS----DDEIWKAL 1326 (1467)
Q Consensus 1261 ~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~~i~iIpQdp--~LF~-gTIR~NLd-p~---~~~s----d~ei~~aL 1326 (1467)
++|.|+.+|++|+|.+||.++...+.. .+|++|+||||+| .++. -|+++|+. +. +..+ ++++.++|
T Consensus 368 k~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L 447 (623)
T PRK10261 368 RALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLL 447 (623)
T ss_pred HHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999877643 4678899999998 3665 49999984 21 1112 24567788
Q ss_pred HHcCCc-hHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcE
Q 000481 1327 EKCQLK-TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCT 1403 (1467)
Q Consensus 1327 ~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~T 1403 (1467)
+.+++. +.....| ..||||||||++|||||+.+|+||||||||++||..+.+.|.+.|++.. .+.|
T Consensus 448 ~~~gL~~~~~~~~~-----------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~t 516 (623)
T PRK10261 448 ERVGLLPEHAWRYP-----------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIA 516 (623)
T ss_pred HHcCCCHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 888885 3333322 3699999999999999999999999999999999999999999998753 3789
Q ss_pred EEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCChh-HHHHH
Q 000481 1404 VITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSF-SKLVA 1449 (1467)
Q Consensus 1404 vI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f-~~lv~ 1449 (1467)
+|+|||+++.+.+ ||||+||++|+|+|.|+++++.+ +...| +.++.
T Consensus 517 vi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 517 YLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999976 99999999999999999999987 34444 33443
No 52
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.2e-65 Score=652.06 Aligned_cols=548 Identities=20% Similarity=0.261 Sum_probs=425.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
.+.+++.+++.+....++.++..++.++.|+++..++|..-... .......++.++++..++..+......+...+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKD-SSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777888888999999999999999998632111 11111112222223333334444445566778889
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++...+++.+.|++++++++|++.+.++.. .+..++...+.+++++++++...++.+++.++.
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999888889999999999999999987643 233444444445555444444433333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000481 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ-LRKAYGTV 505 (1467)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~-~~~~~~~~ 505 (1467)
+++...+...+.+.+++..++.++..++..+.+.|.++|+++||.+++|+.+.++.++..++..+...+.. .......+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (576)
T TIGR02204 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAI 247 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344557778888888889999999999999999999999999999887777766655444322222 21112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 000481 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1467)
Q Consensus 506 ~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1467)
...+..+...+++++|..++.++.+|++.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+.....
T Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 327 (576)
T TIGR02204 248 VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP 327 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC
Confidence 11222222333444555555568999999999999999999999999999999999999999999999764431111111
Q ss_pred c-cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 000481 586 I-SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1467)
Q Consensus 586 ~-~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 658 (1467)
. ...+..+.|+++|++|+|++++++++|+|+||+++|||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 328 ~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 328 KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407 (576)
T ss_pred ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc
Confidence 1 111123469999999999764346799999999999999999999999999999999999999999999987
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+||+|.+||||||||++|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 4999999999999999999999875 67889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
|||++++|+++|||||||+||+++++.+++.+ ....+++|+|+||||++.++.+|+|++|++|++++.|+|+++.+.++
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l-~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 99999999999999999999999999887654 44457899999999999999999999999999999999999999988
Q ss_pred hHHHHHH
Q 000481 811 AFEQLVN 817 (1467)
Q Consensus 811 ~~~~~~~ 817 (1467)
.|.++++
T Consensus 567 ~~~~l~~ 573 (576)
T TIGR02204 567 LYARLAR 573 (576)
T ss_pred hHHHHHh
Confidence 8888764
No 53
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.6e-65 Score=661.33 Aligned_cols=545 Identities=21% Similarity=0.242 Sum_probs=432.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
+..++.+++.+....++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (694)
T TIGR01846 131 IPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSR 209 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888888899999999999999998764221 222222333344444455555555555667788899
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1467)
+...++..+|+|.++++...+++.++|++++++ +|++.+.++.. .+.......+.+++.+++++..-++.+++.++++
T Consensus 210 ~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 288 (694)
T TIGR01846 210 IDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSL 288 (694)
T ss_pred HHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 69999988643 2333332333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVI 506 (1467)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~ 506 (1467)
++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++..++..+...+....... ....
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR01846 289 VCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAI 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777778888888888999999999999999999999999888777766655544433222222221 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 000481 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1467)
Q Consensus 507 ~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 586 (1467)
..+..+...++.++|.+++.++.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. ...
T Consensus 369 ~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~ 447 (694)
T TIGR01846 369 ELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLA 447 (694)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCC
Confidence 2222233334455666666668999999999999999999999999999999999999999999999765433211 111
Q ss_pred cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 000481 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1467)
Q Consensus 587 ~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 658 (1467)
..+...+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 448 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 448 ALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526 (694)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH
Confidence 112234579999999999754 35799999999999999999999999999999999999999999999988
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 3899999999999999999999875 7789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+|||||||+||+++++.+.+.+ ....+++|+|+||||++.++.||+|++|++|+|++.|+|+|+++.++.|
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y 685 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLY 685 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChH
Confidence 999999999999999999999999987655 4445789999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000481 813 EQLVNA 818 (1467)
Q Consensus 813 ~~~~~~ 818 (1467)
.++++.
T Consensus 686 ~~l~~~ 691 (694)
T TIGR01846 686 ARLWQQ 691 (694)
T ss_pred HHHHHh
Confidence 998764
No 54
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-65 Score=600.78 Aligned_cols=529 Identities=23% Similarity=0.304 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 282 IAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1467)
Q Consensus 282 ~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~ 361 (1467)
..++.++..++...+-.++...++.+-.++. ....+.+++.++++.++++++...-....++.+.++|..++..+++|.
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777666654433221 233344556667777788888777777889999999999999999999
Q ss_pred HcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHL---TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1467)
Q Consensus 362 l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~---~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~ 437 (1467)
.++++...++.++|+.+++++.-++.+..+.. +++. ....|+.++++++...+.-+. +-++.+.++.+..+.+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aal---Illit~PlIPlfMilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAAL---ILLITAPLIPLFMILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHH
Confidence 99999988899999999999999999877543 2222 223344444444444333333 2233333333344456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE----KFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1467)
Q Consensus 438 ~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~----~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~ 513 (1467)
++..++..+++++....-....-+.|+|+.++|.|+..+ ++.+.-++.|+.-++.+|.......+.-++.. -.+
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~--lsi 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAY--LSI 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 777888888888888888889999999999999999754 45566677888888887755443333222222 122
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc-ccccCCC
Q 000481 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1467)
Q Consensus 514 ~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1467)
..++.+++..+.+.+.++....+.++.+.--+..|++.+...++.-+++..+.+++..|++.+....+.... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 233456666666535899999999999999999999999999999999999999999999887654332211 1111122
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..++.+|++|.|+++ +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 345556999999864 3899999999999999999999999999999999999999999999987 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
++||+|+|.+|++||||||.++++ .+++++.++++.+++.+.++. |+|.+|.|||+|.+|||||+|||+||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998 678999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
++||||||||+||+++++.|.+ .+....++||+|+||||++.+..+|+|++|++|+++++|+|+++.++++.|++++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~-~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQ-ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHH-HHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 9999999999999999998865 455666789999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000481 819 HR 820 (1467)
Q Consensus 819 ~~ 820 (1467)
+.
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 54
No 55
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.1e-64 Score=646.82 Aligned_cols=541 Identities=18% Similarity=0.247 Sum_probs=413.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1467)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 351 (1467)
.+.+++.++..+++.++..++.++.|+++..++|.+.... .... +++.+++..++..+......+...++..+++.
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778888888999999999999998764321 2111 11111111222222232333456677788888
Q ss_pred HHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1467)
Q Consensus 352 ~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~ 430 (1467)
.++..+|+|.++++...+.+.++|++++++++|++.+.+... .+.......+..++.+++++..-.+.+++.++++++.
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~ 169 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVY 169 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999875432 2222222223233333333333233333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000481 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIYWM 509 (1467)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~~~~~~~~~~~ 509 (1467)
..+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+.-++..+...+ ..............
T Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK13657 170 TLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAA 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888888999999999999999999999999987666555444333222111 11111111122222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 000481 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1467)
Q Consensus 510 ~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1467)
..+...++.+++.+++.++.+|++.+++++.++..+..|+..+...+..+.++..+++|+.+++..++..++........
T Consensus 250 ~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 329 (588)
T PRK13657 250 STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLG 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcC
Confidence 23333334444555555689999999999999999999999999999999999999999999987643221111111111
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 000481 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1467)
Q Consensus 590 ~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 658 (1467)
...+.|+++|++|+|+++ +++|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 330 ~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 330 RVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred CCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH
Confidence 223469999999999742 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
.|+||||+|++|++||||||.++++ .++++++++++.++++++++.+|+|.+|.+|++|.+||||||||++||||++
T Consensus 408 r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall 487 (588)
T PRK13657 408 RRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487 (588)
T ss_pred HhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999999975 6788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 815 (1467)
++|+|+|||||||+||+++++.+++.+. ...+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|.++
T Consensus 488 ~~~~iliLDEpts~LD~~t~~~i~~~l~-~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l 566 (588)
T PRK13657 488 KDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHH-HHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHH
Confidence 9999999999999999999999976554 445689999999999999999999999999999999999999988899998
Q ss_pred HHHh
Q 000481 816 VNAH 819 (1467)
Q Consensus 816 ~~~~ 819 (1467)
++.+
T Consensus 567 ~~~~ 570 (588)
T PRK13657 567 LRAQ 570 (588)
T ss_pred HHHh
Confidence 7643
No 56
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.6e-65 Score=644.30 Aligned_cols=530 Identities=22% Similarity=0.277 Sum_probs=410.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000481 286 ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLS 365 (1467)
Q Consensus 286 ~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~ 365 (1467)
.++..++..+.|++++.++|............+.+++++++..++..++.....+...+.+.++...++..+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556677889999999999764322122222233333444444455554444455667888889999999999999999
Q ss_pred ccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVPFAKILQK 443 (1467)
Q Consensus 366 ~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~-~~l~gl~~~~~~~~~~~~~~~~~~~ 443 (1467)
...+++.++|++++++++|++.+..... .+..++..++..++++++++..++| .+++.++++++...+...+.++..+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976442 2444555444444444444333333 3333334444444445556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIYWMSPTIISSVIFLGC 522 (1467)
Q Consensus 444 ~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~ 522 (1467)
..++.++..++..+.+.|.++|+++||.|++|+.+.++..+..++..+...+ ................+...++.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888999999999999999999988766665544332222111 111111112222222222233344555
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEE
Q 000481 523 ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNF 602 (1467)
Q Consensus 523 ~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf 602 (1467)
+++.++.+|+|.+++++.++..+..|+..+++.+..+.+++++.+|+.++++.++..++.. ...+...+.|+++|++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEEEE
Confidence 6666689999999999999999999999999999999999999999999997653321111 11112235699999999
Q ss_pred EeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEccCCcC
Q 000481 603 SWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI 669 (1467)
Q Consensus 603 ~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l 669 (1467)
+|+.+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++||+|+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 35799999999999999999999999999999999999999999999987 48999999999
Q ss_pred CCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000481 670 QSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1467)
Q Consensus 670 ~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~s 748 (1467)
|++|++|||.+|.+ .++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|+++|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999964 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHh
Q 000481 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1467)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 819 (1467)
+||+++++.+.+.+ ....+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|.++++.+
T Consensus 481 ~LD~~~~~~i~~~l-~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHNL-RQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHHH-HHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999998754 44457899999999999999999999999999999999999999999999887654
No 57
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.8e-65 Score=643.09 Aligned_cols=505 Identities=19% Similarity=0.240 Sum_probs=383.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 350 (1467)
+.+.+++.++...++.++..++..+.|++++.++|........... +.++.++++..++..+......+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677778888889999999999999999865432211111 111111212333344444444455667888888
Q ss_pred HHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 351 ~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
..++..+|+|.++++...+++.++|++++++++|++++.+.... +..+....+.+++++++++..-+..+++.++.+++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876543 33344444444455544444333333333322222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000481 430 CGLLNVPF-AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIY 507 (1467)
Q Consensus 430 ~~~~~~~~-~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~~ 507 (1467)
+..+...+ .+..++..++..+..++..+.+.|.++|+++||.|++|+.+.++.++..++..+...+....... ..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223 33345556667778899999999999999999999999988888777665544433332222222 22222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc--
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-- 585 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~-- 585 (1467)
....+...++.+++.+++.++.++.+.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..++....
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 222222333445555555568899999999999999999999999999999999999999999999765432111100
Q ss_pred ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 000481 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1467)
Q Consensus 586 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 658 (1467)
.......+.|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~ 403 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQ 403 (529)
T ss_pred cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHH
Confidence 0011123469999999999753 4699999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|++|.|||+|.+||||||||++|||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 7999999999999999999999975 6889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1467)
|++++|+|+|||||||+||+++++.+.+.+ ....+++|+|+||||+
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 999999999999999999999999997655 4556789999999985
No 58
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3e-65 Score=645.59 Aligned_cols=480 Identities=17% Similarity=0.165 Sum_probs=378.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
++++.++..++.+...++....+.+....++.++++++++.|+.||++.++|++++|+++|++.++..+. .+..++..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~ 137 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIAL 137 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHH
Confidence 4455566677888888999999999999999999999999999999999999999999999999998775 366667777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHH--HHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVD--RFFQ 1098 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~--~f~~ 1098 (1467)
+.+++.++++++.+|.+.++++..+++...+..+..+..++..+......+.+.+++.|.+.|+.+||+|+.++ ...+
T Consensus 138 ~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~ 217 (555)
T TIGR01194 138 AIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG 217 (555)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHH
Confidence 77777888888899988776655444444444333333333333344455678899999999999999999854 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYL 1177 (1467)
Q Consensus 1099 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~-~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~l 1177 (1467)
++.+..+...+.................++..+ ..++.++ ....+.++.|.+..++.|+..+..++..+...+.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~ 294 (555)
T TIGR01194 218 AIQESANNIADLHIIEILIFIAAENFGQLLFFL---LIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPIL 294 (555)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544443322211111111111111111 1111111 111257888888888889999999999999999999
Q ss_pred HHHhhHHHHHHHhhcCCCCCCCCc--CC-CCC--CCCCCCcceEEEEEEEEEeCCC---CCcceeceeEEeeCCcEEEEE
Q 000481 1178 ANYIISVERIKQFMHIPPEPPAIV--ED-KRP--PSSWPFKGRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVV 1249 (1467)
Q Consensus 1178 e~~~~sveRi~~~~~~~~e~~~~~--~~-~~~--~~~wp~~g~I~f~nvs~~Y~~~---~~~vLk~is~~I~~GekVgIV 1249 (1467)
+....|.+|+.++.+.+++++... ++ ... ....+..+.|+|+||+|+|++. .+++|+|+||+|++||++|||
T Consensus 295 ~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aiv 374 (555)
T TIGR01194 295 AQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIV 374 (555)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEE
Confidence 999999999999976432221110 00 000 0111234789999999999643 236999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHc
Q 000481 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKC 1329 (1467)
Q Consensus 1250 GrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~ 1329 (1467)
|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|++|+|+|+.| ..+|++++++++.+
T Consensus 375 G~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~ 452 (555)
T TIGR01194 375 GENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRL 452 (555)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999754 46899999999999
Q ss_pred CCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-H-cCCcEEEEE
Q 000481 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-E-FSNCTVITV 1407 (1467)
Q Consensus 1330 ~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~-~-~~~~TvI~I 1407 (1467)
++++++..+|+|+||. .+||||||||++||||++++|+|||||||||+||++|++.|++.+.+ . .+++|+|+|
T Consensus 453 ~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiii 527 (555)
T TIGR01194 453 EIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIII 527 (555)
T ss_pred CCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999999995 68999999999999999999999999999999999999999887643 2 468999999
Q ss_pred ccCchhhcccCEEEEEeCCEEEEe
Q 000481 1408 AHRVPTVIDSDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1408 AHRl~ti~~~DrIlVl~~G~ivE~ 1431 (1467)
|||++++..||+|+||++|+++|.
T Consensus 528 sH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 528 SHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred eccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999985
No 59
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.4e-67 Score=660.70 Aligned_cols=447 Identities=23% Similarity=0.401 Sum_probs=346.3
Q ss_pred cEEEEeEEEEeCCC-CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 000481 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 658 (1467)
.++++|++++|+.. ..+++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124799999999999999999999999999999999999986 799998754
Q ss_pred --------eEEEEccCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 659 --------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 659 --------~i~yv~Q~~~--l~-~~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
.++|++|++. ++ ..|+++|+.++. ..+ .++..++++.+++.+... ....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3899999984 33 359999987421 122 234455666665532110 11246679
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
|||||||||+||||++.+|+++||||||++||+++.+.+.+.+.+... .|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998765544333 38999999999999875 8999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHH
Q 000481 798 QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1467)
Q Consensus 798 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1467)
+.|+.+++..... .
T Consensus 237 ~~g~~~~~~~~~~----------------------------------------------------~-------------- 250 (529)
T PRK15134 237 EQNRAATLFSAPT----------------------------------------------------H-------------- 250 (529)
T ss_pred EeCCHHHHhhCCC----------------------------------------------------C--------------
Confidence 9888765431000 0
Q ss_pred HhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000481 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSF 957 (1467)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 957 (1467)
. +...
T Consensus 251 ----------~---~~~~-------------------------------------------------------------- 255 (529)
T PRK15134 251 ----------P---YTQK-------------------------------------------------------------- 255 (529)
T ss_pred ----------H---HHHH--------------------------------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000481 958 FAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQV 1037 (1467)
Q Consensus 958 ~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 1037 (1467)
++
T Consensus 256 ----------------~~-------------------------------------------------------------- 257 (529)
T PRK15134 256 ----------------LL-------------------------------------------------------------- 257 (529)
T ss_pred ----------------HH--------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1038 LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGV 1117 (1467)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~ 1117 (1467)
+.
T Consensus 258 ----------------------------~~-------------------------------------------------- 259 (529)
T PRK15134 258 ----------------------------NS-------------------------------------------------- 259 (529)
T ss_pred ----------------------------Hh--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCC
Q 000481 1118 MEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP 1197 (1467)
Q Consensus 1118 ~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~ 1197 (1467)
.. + .++..
T Consensus 260 --------------------------~~----------------------------------------~------~~~~~ 267 (529)
T PRK15134 260 --------------------------EP----------------------------------------S------GDPVP 267 (529)
T ss_pred --------------------------Cc----------------------------------------c------ccccc
Confidence 00 0 00000
Q ss_pred CCCcCCCCCCCCCCCcceEEEEEEEEEeCC---------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1198 PAIVEDKRPPSSWPFKGRIELRQLKIRYRP---------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1198 ~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
+ . ++ ...-|+++|++++|.. +...+|+|+||+|++||.+||+|+||||||||+++|.|+++
T Consensus 268 ~---~---~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 337 (529)
T PRK15134 268 L---P---EP----ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN 337 (529)
T ss_pred c---C---CC----CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 0 0 00 0114899999999952 12469999999999999999999999999999999999984
Q ss_pred CCcceEEECCeeCCCCCHHH---HhhccEEeccCC--ccccc-chHHhcCC-C---C-CCC----HHHHHHHHHHcCCch
Q 000481 1269 PAGGSILIDGVDICSMGLKD---LRVKLSIIPQEP--TLFRG-SVRTNLDP-L---G-LYS----DDEIWKALEKCQLKT 1333 (1467)
Q Consensus 1269 ~~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp--~LF~g-TIR~NLdp-~---~-~~s----d~ei~~aL~~~~l~~ 1333 (1467)
++|+|.+||.++...+... +|++++++||+| .+|.. |+++|+.. . + ..+ ++.+.++++..++.+
T Consensus 338 -~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 338 -SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416 (529)
T ss_pred -CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH
Confidence 8999999999998776544 478899999998 36664 99999952 1 1 011 245667788888752
Q ss_pred -HHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccC
Q 000481 1334 -TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHR 1410 (1467)
Q Consensus 1334 -~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHR 1410 (1467)
.... + ..+||||||||++||||++.+|+||||||||++||..+.+.+.+.|++.. .++|||+|+|+
T Consensus 417 ~~~~~-------~----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd 485 (529)
T PRK15134 417 ETRHR-------Y----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485 (529)
T ss_pred HHHhc-------C----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 3222 2 24699999999999999999999999999999999999999999998764 37899999999
Q ss_pred chhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1411 VPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1411 l~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++.+.. ||||++|++|++++.|+++++++
T Consensus 486 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 515 (529)
T PRK15134 486 LHVVRALCHQVIVLRQGEVVEQGDCERVFA 515 (529)
T ss_pred HHHHHHhcCeEEEEECCEEEEEcCHHHHhc
Confidence 999976 99999999999999999999986
No 60
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-67 Score=655.44 Aligned_cols=440 Identities=23% Similarity=0.357 Sum_probs=340.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC--CCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g------------- 658 (1467)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999953 4699999999999999999999999999999999999986 899999876
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|++.++. .|++||+.++.. .+.+ +.+++++..++. .....+..+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHHHHH
Confidence 2899999987765 599999998743 1222 223333333321 1123566789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
|++||||++.+|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999887555544568999999999999875 899999999999876643221
Q ss_pred HhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCccc
Q 000481 806 LLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVG 885 (1467)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 885 (1467)
... +
T Consensus 231 ~~~--------------------------------------------------------------------~-------- 234 (506)
T PRK13549 231 TED--------------------------------------------------------------------D-------- 234 (506)
T ss_pred CHH--------------------------------------------------------------------H--------
Confidence 000 0
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~ 965 (1467)
....
T Consensus 235 ------~~~~---------------------------------------------------------------------- 238 (506)
T PRK13549 235 ------IITM---------------------------------------------------------------------- 238 (506)
T ss_pred ------HHHH----------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000481 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1467)
Q Consensus 966 ~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1045 (1467)
+
T Consensus 239 --------~----------------------------------------------------------------------- 239 (506)
T PRK13549 239 --------M----------------------------------------------------------------------- 239 (506)
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRV 1125 (1467)
Q Consensus 1046 ~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl 1125 (1467)
. +
T Consensus 240 --------------------~------------------------~---------------------------------- 241 (506)
T PRK13549 240 --------------------V------------------------G---------------------------------- 241 (506)
T ss_pred --------------------h------------------------C----------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCC
Q 000481 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKR 1205 (1467)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~ 1205 (1467)
. .. .+ ..|.++
T Consensus 242 -------------------~-~~------------------------------------~~-----~~~~~~-------- 252 (506)
T PRK13549 242 -------------------R-EL------------------------------------TA-----LYPREP-------- 252 (506)
T ss_pred -------------------c-Cc------------------------------------cc-----cccccc--------
Confidence 0 00 00 000000
Q ss_pred CCCCCCCcceEEEEEEEEEeCC-CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-CCcceEEECCeeCCC
Q 000481 1206 PPSSWPFKGRIELRQLKIRYRP-NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-PAGGSILIDGVDICS 1283 (1467)
Q Consensus 1206 ~~~~wp~~g~I~f~nvs~~Y~~-~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-~~~G~I~IDG~dI~~ 1283 (1467)
++ +...-|+++|++++|.. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.+++.
T Consensus 253 ~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~ 329 (506)
T PRK13549 253 HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKI 329 (506)
T ss_pred cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCC
Confidence 00 01124999999999942 23459999999999999999999999999999999999998 599999999999876
Q ss_pred CCH-HHHhhccEEeccCC---cccc-cchHHhcCCC--CC------CCH----HHHHHHHHHcCCchHHhhCCCCccccc
Q 000481 1284 MGL-KDLRVKLSIIPQEP---TLFR-GSVRTNLDPL--GL------YSD----DEIWKALEKCQLKTTISSLPNKLDSSV 1346 (1467)
Q Consensus 1284 i~l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~--~~------~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v 1346 (1467)
.+. +..|.+++|+||+| .+|. .|+.+|+... .. .+. +++.++++..++.+ +..+..+
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~ 403 (506)
T PRK13549 330 RNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ASPELAI 403 (506)
T ss_pred CCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------CCccccc
Confidence 543 44678899999997 3665 5999999521 11 121 34566777776631 1123333
Q ss_pred ccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEe
Q 000481 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLS 1424 (1467)
Q Consensus 1347 ~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~ 1424 (1467)
..||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|+
T Consensus 404 ----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 404 ----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred ----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999988653 47899999999999876 99999999
Q ss_pred CCEEEEecChhHHh
Q 000481 1425 YGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1425 ~G~ivE~g~p~~Ll 1438 (1467)
+|+++..|+++++.
T Consensus 480 ~G~i~~~~~~~~~~ 493 (506)
T PRK13549 480 EGKLKGDLINHNLT 493 (506)
T ss_pred CCEEEEEeccccCC
Confidence 99999999988764
No 61
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1e-63 Score=634.79 Aligned_cols=542 Identities=18% Similarity=0.227 Sum_probs=418.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 350 (1467)
+++.+++.++...++.++..++..+.|++++.++|...... ... .++...++..++..+......+...++..+++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVL---PTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888889999999999999999999764322 111 11111112223333333334455677888899
Q ss_pred HHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 351 ~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
..++..+|+|.++++...+++.++|++++++++|++.+.++.. .+......++.+++.+++++..-+..+++.++++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986543 233333444444444444443333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRKAYGTVIYW 508 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~-~~~~~~~~~~~~ 508 (1467)
...+...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++.++..++..+...+. ........+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677777777888888889999999999999999999999877666655444322211111 111111112222
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccc
Q 000481 509 MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1467)
Q Consensus 509 ~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1467)
...+...++.++|.+++.++.++.|.+++++.++..+..|+..++..+..+.+++.+++|+.++++.++..++.......
T Consensus 249 ~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 328 (585)
T TIGR01192 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL 328 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC
Confidence 22223334445555666668999999999999999999999999999999999999999999998764322111111111
Q ss_pred cCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------
Q 000481 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1467)
Q Consensus 589 ~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------- 658 (1467)
+...+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 329 PNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES 406 (585)
T ss_pred CCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH
Confidence 1223469999999999743 4689999999999999999999999999999999999999999999887
Q ss_pred ---eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
.++||||+|++|++|++|||.++.+ .++++.+++++.+++++++..+|+|++|.+|++|.+||||||||++||||+
T Consensus 407 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999865 678889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 814 (1467)
+++|+++|||||||+||+++++.+.+.+ ....+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|.+
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~~l-~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYK 565 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHH
Confidence 9999999999999999999999987644 455678999999999999999999999999999999999999999999998
Q ss_pred HHHHh
Q 000481 815 LVNAH 819 (1467)
Q Consensus 815 ~~~~~ 819 (1467)
++..+
T Consensus 566 l~~~~ 570 (585)
T TIGR01192 566 LLRRS 570 (585)
T ss_pred HHHhC
Confidence 87644
No 62
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.5e-64 Score=632.05 Aligned_cols=522 Identities=20% Similarity=0.221 Sum_probs=404.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1467)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 354 (1467)
+++.++...++.++..++.++.|++++.++|...... .....+.+++++++..++..++.....+...+.+.++...++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888889999999999999998653211 112222334444445555566666666777888999999999
Q ss_pred HHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGL 432 (1467)
Q Consensus 355 ~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~--~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~ 432 (1467)
..+|+|.++++.. ..++..+.+++|++++.+.... +..+...++.++.. ++++..-++.+++.++.+++...
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999873 2356678889999999875432 23333333333322 23333333333333322222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 433 LNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWMSP 511 (1467)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~-~~~~~~ 511 (1467)
+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+.......... ......
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777778888999999999999999999999999999998888777666655443332222222211 111122
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCC
Q 000481 512 TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS 591 (1467)
Q Consensus 512 ~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 591 (1467)
+...++.++|.+++.++.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..++. ...+..
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~ 313 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCC
Confidence 22233344555566668999999999999999999999999999999999999999999999765432211 111122
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 3569999999999743 35799999999999999999999999999999999999999999999987
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
.++||||+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 4999999999999999999997654 788999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHh
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|+++|||||||+||+++++.+.+.+.....+++|+|++|||++.+..||+|++|++|++++.|+|+|+++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999987655433346899999999999998999999999999999999999864
No 63
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-66 Score=651.84 Aligned_cols=438 Identities=22% Similarity=0.361 Sum_probs=338.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC----------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~----------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
++||+|++.++. .|++||+.++.. .+. ++..++++.+++.+ ....+..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHH
Confidence 899999987765 599999988632 011 12233344333321 1235567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999887655544568999999999999875 8999999999998877654
Q ss_pred HHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCc
Q 000481 804 ELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGD 883 (1467)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 883 (1467)
++... +..+.
T Consensus 231 ~~~~~-----~~~~~----------------------------------------------------------------- 240 (510)
T PRK09700 231 DVSND-----DIVRL----------------------------------------------------------------- 240 (510)
T ss_pred hCCHH-----HHHHH-----------------------------------------------------------------
Confidence 42100 00000
Q ss_pred ccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 884 VGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963 (1467)
Q Consensus 884 v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~ 963 (1467)
+.
T Consensus 241 --------~~---------------------------------------------------------------------- 242 (510)
T PRK09700 241 --------MV---------------------------------------------------------------------- 242 (510)
T ss_pred --------hc----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000481 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIF 1043 (1467)
Q Consensus 964 ~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1043 (1467)
|+ +
T Consensus 243 ----------------------------~~-------~------------------------------------------ 245 (510)
T PRK09700 243 ----------------------------GR-------E------------------------------------------ 245 (510)
T ss_pred ----------------------------CC-------C------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1044 AMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLIL 1123 (1467)
Q Consensus 1044 ~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1123 (1467)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK09700 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCC
Q 000481 1124 RVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203 (1467)
Q Consensus 1124 rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~ 1203 (1467)
.. .+ +....+...
T Consensus 246 ------------------------~~-----------------------------------~~---~~~~~~~~~----- 258 (510)
T PRK09700 246 ------------------------LQ-----------------------------------NR---FNAMKENVS----- 258 (510)
T ss_pred ------------------------cc-----------------------------------cc---ccccccccc-----
Confidence 00 00 000000000
Q ss_pred CCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC
Q 000481 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS 1283 (1467)
Q Consensus 1204 ~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~ 1283 (1467)
++ +.+..|+++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 259 --~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 259 --NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISP 329 (510)
T ss_pred --cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCC
Confidence 00 0112599999999773 28999999999999999999999999999999999999999999999999976
Q ss_pred CCH-HHHhhccEEeccCC---ccccc-chHHhcCCCCC------------CC----HHHHHHHHHHcCCchHHhhCCCCc
Q 000481 1284 MGL-KDLRVKLSIIPQEP---TLFRG-SVRTNLDPLGL------------YS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1467)
Q Consensus 1284 i~l-~~LR~~i~iIpQdp---~LF~g-TIR~NLdp~~~------------~s----d~ei~~aL~~~~l~~~i~~lp~gL 1342 (1467)
.+. ..+|++++|+||++ .+|.+ |+++|+..... .+ ++++.++++..++.. +..
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~ 403 (510)
T PRK09700 330 RSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HSV 403 (510)
T ss_pred CCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CCc
Confidence 543 45778999999984 57765 99999853110 11 123556677766531 123
Q ss_pred ccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEE
Q 000481 1343 DSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMV 1420 (1467)
Q Consensus 1343 dt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrI 1420 (1467)
+.++ ..||||||||++|||||+++|+||||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+.. ||||
T Consensus 404 ~~~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i 479 (510)
T PRK09700 404 NQNI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI 479 (510)
T ss_pred cCcc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 3444 3599999999999999999999999999999999999999999998753 47899999999998865 9999
Q ss_pred EEEeCCEEEEecChhH
Q 000481 1421 MVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1421 lVl~~G~ivE~g~p~~ 1436 (1467)
++|++|++++.+++.+
T Consensus 480 ~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 480 AVFCEGRLTQILTNRD 495 (510)
T ss_pred EEEECCEEEEEecCcc
Confidence 9999999999887634
No 64
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.8e-66 Score=649.55 Aligned_cols=438 Identities=25% Similarity=0.395 Sum_probs=342.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC--CCCCcEEEEc---------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~--------------- 657 (1467)
|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 46999999999999999999999999999999999996 7999999875
Q ss_pred --------C-----------------------eEEEEccC-CcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhc
Q 000481 658 --------G-----------------------SIAYVSQT-SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACA 697 (1467)
Q Consensus 658 --------g-----------------------~i~yv~Q~-~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~ 697 (1467)
| .++|++|+ +.++. .|++||+.++.. .+ .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 55554 699999987521 22 234555666666
Q ss_pred chHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEc
Q 000481 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVT 776 (1467)
Q Consensus 698 l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvt 776 (1467)
+.+..+ ....+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.+... .|+|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 654332 45678999999999999999999999999999999999999998765554433 489999999
Q ss_pred cCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q 000481 777 HQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIY 855 (1467)
Q Consensus 777 H~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1467)
|+++.+.. ||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 99999875 899999999999876654432100
Q ss_pred CCCCCCcccccccccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchh
Q 000481 856 PRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSG 935 (1467)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~ 935 (1467)
|.. .
T Consensus 260 ------------------------------------~~~-~--------------------------------------- 263 (520)
T TIGR03269 260 ------------------------------------FME-G--------------------------------------- 263 (520)
T ss_pred ------------------------------------HHh-h---------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHH
Q 000481 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1467)
Q Consensus 936 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~ 1015 (1467)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHH
Q 000481 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1095 (1467)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
+ .
T Consensus 264 ------------------------~------------------------~------------------------------ 265 (520)
T TIGR03269 264 ------------------------V------------------------S------------------------------ 265 (520)
T ss_pred ------------------------c------------------------h------------------------------
Confidence 0 0
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCC---CCCcceeceeEEeeCCcEEEEEcCC
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP---NAPLVLKGITCTFSEGTRVGVVGRT 1252 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---~~~~vLk~is~~I~~GekVgIVGrT 1252 (1467)
++. . +... ++ ...-++++|++++|.. +..++|+|+||+|++||++||+|+|
T Consensus 266 ----------~~~---~-~~~~--------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~N 319 (520)
T TIGR03269 266 ----------EVE---K-ECEV--------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTS 319 (520)
T ss_pred ----------hhc---c-cccc--------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCC
Confidence 000 0 0000 00 0125999999999952 2346999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCcceEEEC-Ce---eCCCCC---HHHHhhccEEeccCCccccc-chHHhcCC-CC-CC----C
Q 000481 1253 GSGKTTLISALFRLVEPAGGSILID-GV---DICSMG---LKDLRVKLSIIPQEPTLFRG-SVRTNLDP-LG-LY----S 1318 (1467)
Q Consensus 1253 GsGKSTL~~~L~rl~~~~~G~I~ID-G~---dI~~i~---l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~-~~----s 1318 (1467)
|||||||+++|.|+++|++|+|.++ |. +++..+ ...+|++++|+||++.+|.. |+++|+.. +. .. .
T Consensus 320 GsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 399 (520)
T TIGR03269 320 GAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399 (520)
T ss_pred CCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999996 64 344433 23567889999999988875 99999941 11 11 1
Q ss_pred HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000481 1319 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE 1398 (1467)
Q Consensus 1319 d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~ 1398 (1467)
++++.++++..++.+.-. ++-++.++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.
T Consensus 400 ~~~~~~~l~~~~l~~~~~--~~~~~~~~----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 400 RMKAVITLKMVGFDEEKA--EEILDKYP----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHHHHHHhCCCCCccc--hhhhhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 235667788887753100 00123333 469999999999999999999999999999999999999999999876
Q ss_pred c--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1399 F--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1399 ~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
. .+.|||+|+|+++.+.. ||||++|++|++++.|+|+++.+
T Consensus 474 ~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 474 REEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 37899999999999976 99999999999999999998764
No 65
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.3e-64 Score=688.44 Aligned_cols=248 Identities=20% Similarity=0.294 Sum_probs=201.4
Q ss_pred HHHHHHHhhHHHHHHHhh--cCCCCCCCCcCCCCCCCCCCCcc--eEEEEEEEEEeC--CCCCcceeceeEEeeCCcEEE
Q 000481 1174 YCYLANYIISVERIKQFM--HIPPEPPAIVEDKRPPSSWPFKG--RIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVG 1247 (1467)
Q Consensus 1174 ~~~le~~~~sveRi~~~~--~~~~e~~~~~~~~~~~~~wp~~g--~I~f~nvs~~Y~--~~~~~vLk~is~~I~~GekVg 1247 (1467)
..+.|+.+.++||..++. +.+.|.+.......+|. ..| .++++|++++|+ ++.+.+|+|||++|+|||++|
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 793 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793 (1394)
T ss_pred ccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEE
Confidence 345677788999998763 34444432222211221 134 479999999985 334579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHHhhccEEeccCCcc-cccchHHhcCCC------CCC
Q 000481 1248 VVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNLDPL------GLY 1317 (1467)
Q Consensus 1248 IVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L-F~gTIR~NLdp~------~~~ 1317 (1467)
|+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++.+ +..|+||||+.. ...
T Consensus 794 I~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999997 78899999999985 3578999999998764 567999999621 123
Q ss_pred CHHH----HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHH
Q 000481 1318 SDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR-ILVLDEANASIDSATDAILQ 1392 (1467)
Q Consensus 1318 sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~-ILiLDEaTs~lD~~Te~~Iq 1392 (1467)
++++ +.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|+
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 4433 567777777654 36889998888999999999999999999997 99999999999999999999
Q ss_pred HHHHHH-cCCcEEEEEccCchhh--cccCEEEEEeCC-EEEEecChh
Q 000481 1393 RIIRQE-FSNCTVITVAHRVPTV--IDSDMVMVLSYG-KLLEYDEPS 1435 (1467)
Q Consensus 1393 ~~i~~~-~~~~TvI~IAHRl~ti--~~~DrIlVl~~G-~ivE~g~p~ 1435 (1467)
+.|++. .+|+|||+++|++++. ..+|+|++|++| +++++|++.
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999986 4689999999999974 469999999997 999999974
No 66
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-65 Score=641.43 Aligned_cols=474 Identities=18% Similarity=0.313 Sum_probs=339.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC-
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS- 671 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~- 671 (1467)
|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.++.
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 689999999963 4699999999999999999999999999999999999999999999976 6999999987654
Q ss_pred CCHHHHHhcCCC-C------------------C--------------------HHHHHHHHHHhcchHHHhcCCCCCCcc
Q 000481 672 GSIRDNILYGKP-M------------------D--------------------KARYDKAIKACALDKDINNFDHGDLTE 712 (1467)
Q Consensus 672 ~ti~eNi~~g~~-~------------------~--------------------~~~~~~~~~~~~l~~~~~~l~~g~~t~ 712 (1467)
.|++||+.++.. . + +++..++++..++.+..
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---------- 148 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ---------- 148 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH----------
Confidence 599999987531 0 0 01122222222221111
Q ss_pred ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEE
Q 000481 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1467)
Q Consensus 713 ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1467)
-.....+|||||||||+||||++.+|+++||||||++||+++.+++.+.+ . ..++|+|+|||+++.+.. ||+|++|
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~--~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVL-N--ERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 12346789999999999999999999999999999999999999887644 3 247899999999999876 8999999
Q ss_pred eCCeEe-EecChHHHHhcCchH-HHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccc
Q 000481 792 EGGQIT-QSGNYQELLLAGTAF-EQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKG 869 (1467)
Q Consensus 792 ~~G~i~-~~G~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1467)
++|+++ +.|+++++++..... +...++.. .
T Consensus 226 ~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~------------------~------------------------------ 257 (530)
T PRK15064 226 DYGELRVYPGNYDEYMTAATQARERLLADNA------------------K------------------------------ 257 (530)
T ss_pred eCCEEEEecCCHHHHHHHHHHHHHHHHHHHH------------------H------------------------------
Confidence 999994 789988875421100 00000000 0
Q ss_pred cCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHH
Q 000481 870 LTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASA 949 (1467)
Q Consensus 870 ~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~ 949 (1467)
.+++.+. +. .|.
T Consensus 258 ----~~~~~~~------------~~--------------------------~~~-------------------------- 269 (530)
T PRK15064 258 ----KKAQIAE------------LQ--------------------------SFV-------------------------- 269 (530)
T ss_pred ----HHHHHHH------------HH--------------------------HHH--------------------------
Confidence 0000000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000481 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGI 1029 (1467)
Q Consensus 950 ~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~ 1029 (1467)
T Consensus 270 -------------------------------------------------------------------------------- 269 (530)
T PRK15064 270 -------------------------------------------------------------------------------- 269 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHH
Q 000481 1030 MTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDAS 1109 (1467)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~ 1109 (1467)
.+... ++. + . ...
T Consensus 270 ---------------------------------~~~~~--~~~---------------~-----------~-----~~~- 282 (530)
T PRK15064 270 ---------------------------------SRFSA--NAS---------------K-----------A-----KQA- 282 (530)
T ss_pred ---------------------------------HHhhc--cch---------------h-----------h-----HHH-
Confidence 00000 000 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000481 1110 LFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1467)
Q Consensus 1110 ~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~ 1189 (1467)
+......++..
T Consensus 283 --------------------------------------------------------------------~~~~~~~~~~~- 293 (530)
T PRK15064 283 --------------------------------------------------------------------TSRAKQIDKIK- 293 (530)
T ss_pred --------------------------------------------------------------------HHHHHHHhhcc-
Confidence 00000000000
Q ss_pred hhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 000481 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1467)
Q Consensus 1190 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~ 1269 (1467)
....++..........+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p 371 (530)
T PRK15064 294 LEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP 371 (530)
T ss_pred ccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 00000000000000000000011236999999999953 3599999999999999999999999999999999999999
Q ss_pred CcceEEECCeeCCCCCHHHHhhccEEeccCCc--ccc-cchHHhcCCCC--CCCHHHHHHHHHHcCCc-hHHhhCCCCcc
Q 000481 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPT--LFR-GSVRTNLDPLG--LYSDDEIWKALEKCQLK-TTISSLPNKLD 1343 (1467)
Q Consensus 1270 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~--LF~-gTIR~NLdp~~--~~sd~ei~~aL~~~~l~-~~i~~lp~gLd 1343 (1467)
++|+|.++| +.+++|+||++. ++. .|+++|+..+. ...++++.++|+..++. +.. +
T Consensus 372 ~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~ 433 (530)
T PRK15064 372 DSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------K 433 (530)
T ss_pred CCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-------c
Confidence 999999998 368999999984 443 59999985321 22456688889998874 332 2
Q ss_pred cccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEE
Q 000481 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMV 1422 (1467)
Q Consensus 1344 t~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlV 1422 (1467)
.+ ..+||||||||++||||++++|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||||++
T Consensus 434 ~~----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~ 507 (530)
T PRK15064 434 KS----VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIE 507 (530)
T ss_pred Cc----ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 22 3469999999999999999999999999999999999999999999875 4699999999999876 999999
Q ss_pred EeCCEEE-EecChhHHhccCC
Q 000481 1423 LSYGKLL-EYDEPSKLMETNS 1442 (1467)
Q Consensus 1423 l~~G~iv-E~g~p~~Ll~~~~ 1442 (1467)
|++|+++ +.|+++++++++|
T Consensus 508 l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 508 ITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred EECCeEEEcCCCHHHHHHHhC
Confidence 9999998 7799999887554
No 67
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-65 Score=641.71 Aligned_cols=446 Identities=21% Similarity=0.368 Sum_probs=344.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCCCC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
++|++|++.++. .|++||+.++.... +++..++++..++.... ..+..+|||||||||+||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 899999987765 59999999875322 23455555555553222 2456789999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCchHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 814 (1467)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++... +
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~ 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD-----D 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH-----H
Confidence 9999999999999999999999987655544568999999999999865 999999999999998887664321 0
Q ss_pred HHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHHHHHHHH
Q 000481 815 LVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN 894 (1467)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 894 (1467)
..+..... . . ..
T Consensus 232 ~~~~~~~~----------------~-------~--------------~~------------------------------- 243 (510)
T PRK15439 232 IIQAITPA----------------A-------R--------------EK------------------------------- 243 (510)
T ss_pred HHHHHhCc----------------c-------c--------------cc-------------------------------
Confidence 00000000 0 0 00
Q ss_pred hhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGF 974 (1467)
Q Consensus 895 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l 974 (1467)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000481 975 TNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRY 1054 (1467)
Q Consensus 975 ~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1467)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1055 YIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134 (1467)
Q Consensus 1055 y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~ 1134 (1467)
+.. .
T Consensus 244 ---------~~~--~----------------------------------------------------------------- 247 (510)
T PRK15439 244 ---------SLS--A----------------------------------------------------------------- 247 (510)
T ss_pred ---------ccc--c-----------------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcc
Q 000481 1135 TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG 1214 (1467)
Q Consensus 1135 ~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g 1214 (1467)
..+. . ...|...+ . ++ +.+-
T Consensus 248 -------------------------------------------------~~~~-~-~~~~~~~~-----~-~~---~~~~ 267 (510)
T PRK15439 248 -------------------------------------------------SQKL-W-LELPGNRR-----Q-QA---AGAP 267 (510)
T ss_pred -------------------------------------------------cccc-c-cccccccc-----c-cC---CCCc
Confidence 0000 0 00000000 0 00 0111
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
-|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+... .|.++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEeccCC---ccccc-chHHhcCCC-----CC--CC---HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1294 SIIPQEP---TLFRG-SVRTNLDPL-----GL--YS---DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1294 ~iIpQdp---~LF~g-TIR~NLdp~-----~~--~s---d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
+|+||+| .+|.. |+++|+..+ .. .. ++++.++|+..++.. +..+.++ ..|||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgG~kq 410 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------NHAEQAA----RTLSGGNQQ 410 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------CCccCcc----ccCCcHHHH
Confidence 9999996 36654 999998421 10 01 123556666666531 1233333 469999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
|++||||++.+|+||||||||++||..+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||||++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998753 47899999999999976 999999999999999999877
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
.+
T Consensus 491 ~~ 492 (510)
T PRK15439 491 NV 492 (510)
T ss_pred CH
Confidence 54
No 68
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.8e-63 Score=625.89 Aligned_cols=511 Identities=21% Similarity=0.265 Sum_probs=392.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1467)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 355 (1467)
|+.++...++.++..++..+.|++++.++|....+.......+.+++++++..++..++.....+...+++.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888889999999999999999976311112222223333444444555555555666777888899999999
Q ss_pred HHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1467)
Q Consensus 356 ~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~ 434 (1467)
.+|+|.++++...+++.++|+++|++++|++.++++.. .+..+....+..++++++++..-.+.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987653 34444555454444444444332222222222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000481 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRKAYGTVIYWMSPTI 513 (1467)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~-~~~~~~~~~~~~~~~~~ 513 (1467)
..+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+. ...............+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777888888999999999999999999999999888777665544332221111 11111111111111122
Q ss_pred HHHH-HHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCC
Q 000481 514 ISSV-IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1467)
Q Consensus 514 ~~~~-~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1467)
..++ .+.++... ++.+|.+.+++++.++..+..|+..+...+..+.+++++++|+.++++.++.+.+.. .. .....
T Consensus 242 ~~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~-~~~~~ 318 (529)
T TIGR02857 242 VALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PV-TAAPA 318 (529)
T ss_pred HHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CC-CCCCC
Confidence 2222 23344444 578999999999999999999999999999999999999999999997543221111 11 11123
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.|+++|++|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 479999999999754 35799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
++||+|+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999865 6788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEE
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1467)
+++|||||||+||+++++.+++.+ ....+++|+|+||||++.++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEAL-RALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999997655 4455789999999999999999999985
No 69
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.8e-66 Score=644.19 Aligned_cols=433 Identities=20% Similarity=0.343 Sum_probs=336.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC-------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP-------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~-------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
++|++|++.++. .|++||+.++.. .+.+ +..++++.+++.+. ......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 899999987654 599999998743 1222 22333333333211 124567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999876554444468899999999999875 8999999999998765422210
Q ss_pred hcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccH
Q 000481 807 LAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGW 886 (1467)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 886 (1467)
. ++
T Consensus 230 ~--------------------------------------------------------------------~~--------- 232 (501)
T PRK10762 230 E--------------------------------------------------------------------DS--------- 232 (501)
T ss_pred H--------------------------------------------------------------------HH---------
Confidence 0 00
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKA 966 (1467)
Q Consensus 887 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 966 (1467)
.....
T Consensus 233 -----~~~~~---------------------------------------------------------------------- 237 (501)
T PRK10762 233 -----LIEMM---------------------------------------------------------------------- 237 (501)
T ss_pred -----HHHHh----------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000481 967 SKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV 1046 (1467)
Q Consensus 967 s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1046 (1467)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T PRK10762 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE 1126 (1467)
Q Consensus 1047 ~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ 1126 (1467)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T PRK10762 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCC
Q 000481 1127 ALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP 1206 (1467)
Q Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~ 1206 (1467)
.+. +.. ..++..+ .+
T Consensus 238 ------------------~~~--------------------------------------~~~---~~~~~~~------~~ 252 (501)
T PRK10762 238 ------------------VGR--------------------------------------KLE---DQYPRLD------KA 252 (501)
T ss_pred ------------------cCC--------------------------------------Ccc---ccccccc------cC
Confidence 000 000 0000000 00
Q ss_pred CCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH
Q 000481 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286 (1467)
Q Consensus 1207 ~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l 1286 (1467)
|..-.|+++|+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 253 ----~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 253 ----PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred ----CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 0112589999984 27999999999999999999999999999999999999999999999999987665
Q ss_pred -HHHhhccEEeccCC---cccc-cchHHhcCCC-----CC----CC----HHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1287 -KDLRVKLSIIPQEP---TLFR-GSVRTNLDPL-----GL----YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1287 -~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~----~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
+.+|++++|+||+| .+|. -|+++|+... .. .+ ++++.++++.+++.+ +..+.+
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~--- 392 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQA--- 392 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccCc---
Confidence 34678899999997 3554 5999999521 00 11 234566777766531 112333
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCC
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYG 1426 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G 1426 (1467)
...||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|
T Consensus 393 -~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 393 -IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred -hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 34699999999999999999999999999999999999999999998764 47899999999999876 9999999999
Q ss_pred EEEEecChhHHh
Q 000481 1427 KLLEYDEPSKLM 1438 (1467)
Q Consensus 1427 ~ivE~g~p~~Ll 1438 (1467)
++++.|+++++.
T Consensus 472 ~i~~~~~~~~~~ 483 (501)
T PRK10762 472 RISGEFTREQAT 483 (501)
T ss_pred EEEEEeccccCC
Confidence 999999988753
No 70
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-65 Score=639.94 Aligned_cols=435 Identities=21% Similarity=0.335 Sum_probs=335.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|+|++|++.++. .|++||+.++.. .+. ++..++++.+++... ...+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 899999988765 599999998631 122 233344444443211 2345678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+++..++..+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~--- 226 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA--- 226 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccc---
Confidence 99999999999999999999999999999987655544468999999999999865 89999999999975432000
Q ss_pred cCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHH
Q 000481 808 AGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWK 887 (1467)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 887 (1467)
. . ..++
T Consensus 227 -------------------------------~---------------------------------~-~~~~--------- 232 (501)
T PRK11288 227 -------------------------------Q---------------------------------V-DRDQ--------- 232 (501)
T ss_pred -------------------------------c---------------------------------C-CHHH---------
Confidence 0 0 0000
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 888 PFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKAS 967 (1467)
Q Consensus 888 ~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s 967 (1467)
+...
T Consensus 233 ----~~~~------------------------------------------------------------------------ 236 (501)
T PRK11288 233 ----LVQA------------------------------------------------------------------------ 236 (501)
T ss_pred ----HHHH------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000481 968 KAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVA 1047 (1467)
Q Consensus 968 ~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1467)
+
T Consensus 237 ----------~--------------------------------------------------------------------- 237 (501)
T PRK11288 237 ----------M--------------------------------------------------------------------- 237 (501)
T ss_pred ----------h---------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1048 VRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEA 1127 (1467)
Q Consensus 1048 ~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~ 1127 (1467)
..
T Consensus 238 ------------------~~------------------------------------------------------------ 239 (501)
T PRK11288 238 ------------------VG------------------------------------------------------------ 239 (501)
T ss_pred ------------------cC------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCC
Q 000481 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPP 1207 (1467)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~ 1207 (1467)
... ++. .+.++. +
T Consensus 240 ------------------~~~------------------------------------~~~-----~~~~~~-------~- 252 (501)
T PRK11288 240 ------------------REI------------------------------------GDI-----YGYRPR-------P- 252 (501)
T ss_pred ------------------CCc------------------------------------ccc-----cccccc-------C-
Confidence 000 000 000000 0
Q ss_pred CCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-H
Q 000481 1208 SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-L 1286 (1467)
Q Consensus 1208 ~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~-l 1286 (1467)
+....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 253 ---~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 253 ---LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred ---CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHH
Confidence 01125899999842 3899999999999999999999999999999999999999999999999987543 3
Q ss_pred HHHhhccEEeccCCc---ccc-cchHHhcCCCC--C-------CC----HHHHHHHHHHcCCchHHhhCCCCcccccccC
Q 000481 1287 KDLRVKLSIIPQEPT---LFR-GSVRTNLDPLG--L-------YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~---LF~-gTIR~NLdp~~--~-------~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~ 1349 (1467)
+.+|++++++||+|. +|. .|+.+|+.... . .. ++++.+.++..++.+ +..++++
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~--- 394 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSREQLI--- 394 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCccCcc---
Confidence 456789999999983 554 69999985210 0 01 134566777766521 1133343
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1350 G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
.+||||||||++||||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|+
T Consensus 395 -~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 395 -MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred -ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999997753 47899999999999965 99999999999
Q ss_pred EEEecChhHHh
Q 000481 1428 LLEYDEPSKLM 1438 (1467)
Q Consensus 1428 ivE~g~p~~Ll 1438 (1467)
+++.|++++..
T Consensus 474 i~~~~~~~~~~ 484 (501)
T PRK11288 474 IAGELAREQAT 484 (501)
T ss_pred EEEEEccccCC
Confidence 99999987654
No 71
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-65 Score=640.44 Aligned_cols=438 Identities=22% Similarity=0.360 Sum_probs=334.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC--CCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g-------------- 658 (1467)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999953 4699999999999999999999999999999999999987 799999876
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCCC-------CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~~-------~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|++.++. .|++||+.++... +.+ +.+++++.+++.... + .....+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------V----TRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------c----cCchhhCCHHHHH
Confidence 3899999987665 5999999986431 111 223333333322110 0 1345689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+.++.
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999987655444568999999999999876 899999999999865421100
Q ss_pred HhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCccc
Q 000481 806 LLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVG 885 (1467)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 885 (1467)
. . +.
T Consensus 229 ~--------------------------------------------------------------------~-~~------- 232 (500)
T TIGR02633 229 S--------------------------------------------------------------------E-DD------- 232 (500)
T ss_pred C--------------------------------------------------------------------H-HH-------
Confidence 0 0 00
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~ 965 (1467)
...
T Consensus 233 ------~~~----------------------------------------------------------------------- 235 (500)
T TIGR02633 233 ------IIT----------------------------------------------------------------------- 235 (500)
T ss_pred ------HHH-----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000481 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1467)
Q Consensus 966 ~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1045 (1467)
T Consensus 236 -------------------------------------------------------------------------------- 235 (500)
T TIGR02633 236 -------------------------------------------------------------------------------- 235 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRV 1125 (1467)
Q Consensus 1046 ~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl 1125 (1467)
... |
T Consensus 236 ------------------~~~----------------~------------------------------------------ 239 (500)
T TIGR02633 236 ------------------MMV----------------G------------------------------------------ 239 (500)
T ss_pred ------------------HHh----------------C------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCC
Q 000481 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKR 1205 (1467)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~ 1205 (1467)
. ... + ..+.++ .
T Consensus 240 -------------------~-~~~------------------------------------~-----~~~~~~-------~ 251 (500)
T TIGR02633 240 -------------------R-EIT------------------------------------S-----LYPHEP-------H 251 (500)
T ss_pred -------------------c-ccc------------------------------------c-----cccccc-------c
Confidence 0 000 0 000000 0
Q ss_pred CCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CcceEEECCeeCCC
Q 000481 1206 PPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-AGGSILIDGVDICS 1283 (1467)
Q Consensus 1206 ~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-~~G~I~IDG~dI~~ 1283 (1467)
++ .+--|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++..
T Consensus 252 ~~----~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~ 327 (500)
T TIGR02633 252 EI----GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDI 327 (500)
T ss_pred CC----CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCC
Confidence 00 01149999999999432 23599999999999999999999999999999999999995 89999999999975
Q ss_pred CCH-HHHhhccEEeccCC---cccc-cchHHhcCCC-----CC---CC----HHHHHHHHHHcCCchHHhhCCCCccccc
Q 000481 1284 MGL-KDLRVKLSIIPQEP---TLFR-GSVRTNLDPL-----GL---YS----DDEIWKALEKCQLKTTISSLPNKLDSSV 1346 (1467)
Q Consensus 1284 i~l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~---~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v 1346 (1467)
.+. ..+|++++++||++ .+|. .|+++|+... .. .. ++++.+++++.++.+. -.+.++
T Consensus 328 ~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~ 401 (500)
T TIGR02633 328 RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFLPI 401 (500)
T ss_pred CCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccCcc
Confidence 443 56788999999997 3666 4999999631 11 11 2345667777765311 123333
Q ss_pred ccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEe
Q 000481 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLS 1424 (1467)
Q Consensus 1347 ~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~ 1424 (1467)
..||||||||++||||++++|++|||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+.+ ||+|++|+
T Consensus 402 ----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 402 ----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred ----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999998888753 47899999999999976 99999999
Q ss_pred CCEEEEecChhH
Q 000481 1425 YGKLLEYDEPSK 1436 (1467)
Q Consensus 1425 ~G~ivE~g~p~~ 1436 (1467)
+|+++..++..+
T Consensus 478 ~G~i~~~~~~~~ 489 (500)
T TIGR02633 478 EGKLKGDFVNHA 489 (500)
T ss_pred CCEEEEEEcccc
Confidence 999998776544
No 72
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.6e-63 Score=664.26 Aligned_cols=216 Identities=16% Similarity=0.213 Sum_probs=187.6
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
..-|+++|++++|+....++|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.++|.++.+ +.++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533569999999999999999999999999999999999999999999999999975 46678899
Q ss_pred cEEeccCCccccc-chHHhcCCCC---CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
|||+||++.++.. |+||||..+. ..++ +.+.++++.+++.++....+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998865 9999985321 1222 23556788888876543332 35899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||+.+|+||+|||||++||+.+.+.+.+.|++. .+|+|||+++|+++.+.. ||||++|++|+++..|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999875 358999999999999976 999999999999999999999763
No 73
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-63 Score=572.09 Aligned_cols=526 Identities=22% Similarity=0.278 Sum_probs=407.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000481 287 LLRTIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLK 363 (1467)
Q Consensus 287 l~~~~~~~~~P~ll~~~i~~~~~~~-~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~ 363 (1467)
+.+-.+....|++++..++...+.+ .+ .......+.+.+++.++.+++.-...+....+..++-......+|++.+.
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ 119 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMS 119 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677889999999998774211 11 11222334445555566666655555566677777777888899999999
Q ss_pred CCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000481 364 LSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAKIL 441 (1467)
Q Consensus 364 l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~-gl~~~~~~~~~~~~~~~~~ 441 (1467)
++...+.+.++|++.+.|..-...|.+++.. +..+....+++.+....++...|....+ .+..+............+-
T Consensus 120 ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~R 199 (591)
T KOG0057|consen 120 LDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWR 199 (591)
T ss_pred hhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHH
Confidence 9999999999999999998887777775442 4445556677777777888888875432 2222233333444456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 442 QKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFL 520 (1467)
Q Consensus 442 ~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~-~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 520 (1467)
.+++++..++.++-.+.+-+.|.|-..||.|+-|+...++... +++.|-..++..+-....+..--.+..+..+.+.+.
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l 279 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVL 279 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999877655443 333333222211111111111111111222333444
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeE
Q 000481 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1467)
Q Consensus 521 ~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~ 600 (1467)
+..-+.++.+|.+.+....+++.+|..|+..+...+..+.|+..=++-....+..++...+ ...+....++.|+|+|+
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELFGGSIEFDDV 357 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccCCCcEEEEee
Confidence 4433445789999999999999999999999999999999888777665443322211111 01123335567999999
Q ss_pred EEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEccCC
Q 000481 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1467)
Q Consensus 601 sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1467)
+|+|.++ +++|+++||+|++||.+||+|+|||||||++++|+++++ .+|+|.++| .||||||+.
T Consensus 358 ~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 9999864 579999999999999999999999999999999999999 999999998 399999999
Q ss_pred cCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000481 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1467)
Q Consensus 668 ~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep 746 (1467)
.|||+||.+||.+|++ ..++++.++++.+++++-+..+|+|++|.+||+|..|||||||||+||||+++||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 9999999999999987 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
||+||.+|++.+++.+.. ...+||+|+|.||++.+++||+|++++||++.+.|+|+|+++..+.|.+++..
T Consensus 515 TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 999999999999976554 77899999999999999999999999999999999999999988888888754
No 74
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-64 Score=631.22 Aligned_cols=432 Identities=22% Similarity=0.361 Sum_probs=330.2
Q ss_pred EEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eEEE
Q 000481 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAY 662 (1467)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i~y 662 (1467)
++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3688999953 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EccCCcCC-CCCHHHHHhcCCC------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
++|++.++ +.|++||+.++.. .+.+ +.+++++.+++. .....+..+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHH
Confidence 99998765 5699999998642 1222 222233333222 122356779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~--- 223 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM--- 223 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH---
Confidence 99999999999999999999999999987655544568999999999999875 89999999999987665322100
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHHHH
Q 000481 811 AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFM 890 (1467)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 890 (1467)
++.
T Consensus 224 -----------------------------------------------------------------~~~------------ 226 (491)
T PRK10982 224 -----------------------------------------------------------------DKI------------ 226 (491)
T ss_pred -----------------------------------------------------------------HHH------------
Confidence 000
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 891 DYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAF 970 (1467)
Q Consensus 891 ~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l 970 (1467)
..
T Consensus 227 --~~---------------------------------------------------------------------------- 228 (491)
T PRK10982 227 --IA---------------------------------------------------------------------------- 228 (491)
T ss_pred --HH----------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000481 971 FSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRF 1050 (1467)
Q Consensus 971 ~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1467)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQN 1130 (1467)
Q Consensus 1051 ~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~ 1130 (1467)
+.. +
T Consensus 229 -------------~~~------------------------~--------------------------------------- 232 (491)
T PRK10982 229 -------------MMV------------------------G--------------------------------------- 232 (491)
T ss_pred -------------HHh------------------------C---------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC
Q 000481 1131 LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW 1210 (1467)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w 1210 (1467)
. .. .+ ..+++. .+
T Consensus 233 --------------~-~~------------------------------------~~-----~~~~~~-------~~---- 245 (491)
T PRK10982 233 --------------R-SL------------------------------------TQ-----RFPDKE-------NK---- 245 (491)
T ss_pred --------------C-Cc------------------------------------cc-----cccccc-------CC----
Confidence 0 00 00 000000 00
Q ss_pred CCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH-HH
Q 000481 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DL 1289 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~-~L 1289 (1467)
+.+..|+++|++++| ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.+++..+.. .+
T Consensus 246 ~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 246 PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHH
Confidence 011259999999985 2489999999999999999999999999999999999999999999999999877654 45
Q ss_pred hhccEEeccCCc---ccc-cchHHh-----cCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCC
Q 000481 1290 RVKLSIIPQEPT---LFR-GSVRTN-----LDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352 (1467)
Q Consensus 1290 R~~i~iIpQdp~---LF~-gTIR~N-----Ldp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~n 1352 (1467)
|+.++|+||++. +|. .|+++| +... +..+ ++++.+.++..++.+ +.+|.++ .+
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~ 391 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRTQI----GS 391 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCccccc----cc
Confidence 778999999963 565 366666 3211 1112 123445555555421 1133333 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1353 LS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
||||||||++||||++++|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++.
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997643 48999999999999975 99999999999998
Q ss_pred ecChhHH
Q 000481 1431 YDEPSKL 1437 (1467)
Q Consensus 1431 ~g~p~~L 1437 (1467)
.++++++
T Consensus 472 ~~~~~~~ 478 (491)
T PRK10982 472 IVDTKTT 478 (491)
T ss_pred EEccccC
Confidence 8877543
No 75
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-64 Score=631.50 Aligned_cols=440 Identities=23% Similarity=0.329 Sum_probs=337.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999963 3599999999999999999999999999999999999999999998765 27
Q ss_pred EEEccCCcC---------CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~l---------~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+..+ ....+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 999998643 14589999876532 2456667777777654333 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999887665544568999999999999876 89999999999999887665431100
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHHHH
Q 000481 811 AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFM 890 (1467)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 890 (1467)
.+++.. .+
T Consensus 228 -~~~~~~----------------------------------------------------------~~------------- 235 (490)
T PRK10938 228 -VAQLAH----------------------------------------------------------SE------------- 235 (490)
T ss_pred -hhhhhh----------------------------------------------------------hh-------------
Confidence 000000 00
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 891 DYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAF 970 (1467)
Q Consensus 891 ~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l 970 (1467)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000481 971 FSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRF 1050 (1467)
Q Consensus 971 ~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1467)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQN 1130 (1467)
Q Consensus 1051 ~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~ 1130 (1467)
.+... ..
T Consensus 236 -------------~~~~~-~~----------------------------------------------------------- 242 (490)
T PRK10938 236 -------------QLEGV-QL----------------------------------------------------------- 242 (490)
T ss_pred -------------ccCcc-cc-----------------------------------------------------------
Confidence 00000 00
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC
Q 000481 1131 LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW 1210 (1467)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w 1210 (1467)
. . ..++.. ... .+
T Consensus 243 -------------~-----------------------------------------------~-~~~~~~--~~~-~~--- 255 (490)
T PRK10938 243 -------------P-----------------------------------------------E-PDEPSA--RHA-LP--- 255 (490)
T ss_pred -------------C-----------------------------------------------c-cccccc--ccc-cC---
Confidence 0 0 000000 000 00
Q ss_pred CCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CcceEEECCeeCCC-CCHHH
Q 000481 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-AGGSILIDGVDICS-MGLKD 1288 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-~~G~I~IDG~dI~~-i~l~~ 1288 (1467)
+...-|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+.++ ++|+|.+||.++.. .....
T Consensus 256 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~ 333 (490)
T PRK10938 256 ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD 333 (490)
T ss_pred CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH
Confidence 01125999999999953 3599999999999999999999999999999999998875 69999999987642 23445
Q ss_pred HhhccEEeccCCcccc---cchHHhcCC-C----C---CCC---HHHHHHHHHHcCCch-HHhhCCCCcccccccCCCCC
Q 000481 1289 LRVKLSIIPQEPTLFR---GSVRTNLDP-L----G---LYS---DDEIWKALEKCQLKT-TISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~---gTIR~NLdp-~----~---~~s---d~ei~~aL~~~~l~~-~i~~lp~gLdt~v~e~G~nL 1353 (1467)
.|++++++||++.++. -|+++++.. + + ... ++++.++++..++.+ .. +.++ ..|
T Consensus 334 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~----~~L 402 (490)
T PRK10938 334 IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DAPF----HSL 402 (490)
T ss_pred HHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cCch----hhC
Confidence 7889999999987643 367777531 1 1 111 235677888887754 32 2222 469
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEccCchhhcc--cCEEEEEeCCEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS-N-CTVITVAHRVPTVID--SDMVMVLSYGKLL 1429 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~-~TvI~IAHRl~ti~~--~DrIlVl~~G~iv 1429 (1467)
|||||||++||||++++|++|||||||++||+++.+.+.+.|++..+ + .|||+|+|+++.+.+ ||+|++|++|+++
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 99999999999999999999999999999999999999999987643 3 479999999999975 7999999999998
Q ss_pred EecC
Q 000481 1430 EYDE 1433 (1467)
Q Consensus 1430 E~g~ 1433 (1467)
+.-+
T Consensus 483 ~~~~ 486 (490)
T PRK10938 483 RYVQ 486 (490)
T ss_pred Eeec
Confidence 8643
No 76
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.8e-61 Score=665.71 Aligned_cols=472 Identities=17% Similarity=0.197 Sum_probs=367.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1467)
Q Consensus 342 ~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1467)
....+.+.-..+...+|++.++.+..++++.++|+++|++++|++.+.+... .+..+...++.++.++++++....+.+
T Consensus 1029 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777788999999999999999999999999999999987654 344445555555555555443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000481 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL-R 499 (1467)
Q Consensus 421 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~-~ 499 (1467)
++.++++++...+..++.+..+..++.....++...+..+|.++|+++||.|++|+.|.++..+..+...+....... .
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222233333334444444555666778899999999999999999999888776665554432211111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000481 500 KAYGTVIYWMSPTIISSVIFLG-CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1467)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~f~~-~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~ 578 (1467)
..+...+..+... ++++++ +.....+.+++|.+..++.+...+..|+..+...+..+.++.+|.+|+.+|++.++.
T Consensus 1189 ~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e 1265 (1522)
T TIGR00957 1189 RWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKE 1265 (1522)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1111111111111 112222 222334679999999999999999999999999999999999999999999965543
Q ss_pred CCccccc-cccc--CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEE
Q 000481 579 NNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1467)
Q Consensus 579 ~~~~~~~-~~~~--~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~ 655 (1467)
.+...+. .+++ +..+.|+|+|++|+|+++. .++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.
T Consensus 1266 ~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1266 APWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred ccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 2211111 1111 2346899999999997643 4799999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 656 ~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
++| +|+||||+|.+|++||||||....+++++++.++++.|++++.++.+|+|.+|+|||+|.+|||
T Consensus 1345 IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1345 IDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred ECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 988 4999999999999999999984346889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecCh
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~ 802 (1467)
|||||++||||++++|+|+|||||||+||+++++.|. +.++...+++|+|+||||++.+..||+|+||++|+|+|.|+|
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ-STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAP 1503 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999998875 556666789999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHHH
Q 000481 803 QELLLAGTAFEQLVNA 818 (1467)
Q Consensus 803 ~~l~~~~~~~~~~~~~ 818 (1467)
+||+++++.|.+++++
T Consensus 1504 ~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1504 SNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 9999988999988764
No 77
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-64 Score=563.74 Aligned_cols=528 Identities=20% Similarity=0.277 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 284 ICALLRTIAVVVGPLLLYAFVNYSNRGEENL-QEGLSIVGCLIITKV--VESFTQRHCFFGSRRSGMRMRSALMVAVYQK 360 (1467)
Q Consensus 284 ~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~-~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k 360 (1467)
++..+.-++....|.+.+.+++-+..+.... +..+.++++.++-.. +..+..+.-.|...++..-....+-..+|+|
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 3444555667788999998888765332211 112222222221110 0111111111111122222233445577999
Q ss_pred HHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000481 361 QLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC---GLLNVP 436 (1467)
Q Consensus 361 ~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~---~~~~~~ 436 (1467)
.+.+|....-.+.+||+...|..-.+.+. +..+ ...+-...+.++++++.. .+-.....|+++++.+ ..+.+.
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF--~~~Fn~wFgLIVfl~m~lY~~~Ti~ 378 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYF--FIKFNIWFGLIVFLMMLLYCYVTIK 378 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhh--hhhHhHHHHHHHHHHHHHHhheeee
Confidence 99999988888899999988876555544 2222 223333334555554433 3333334444444332 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF----KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPT 512 (1467)
Q Consensus 437 ~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f----~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~ 512 (1467)
+...-.+++++....-.+--..-.+.+-|..+||.|+.|+.. .+.|.+..+.|.+.+..-.+.......+... .
T Consensus 379 iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--g 456 (790)
T KOG0056|consen 379 ITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--G 456 (790)
T ss_pred eehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--H
Confidence 344445555554444333334456788899999999998654 4444444455544332222211111111111 0
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCC
Q 000481 513 IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1467)
Q Consensus 513 ~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1467)
+.....+.+|. +..+.+|.|...-+..|+.++.+|++.++.....++...+-++|+.+.+++++...+.....+.....
T Consensus 457 ll~gsll~aY~-Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~ 535 (790)
T KOG0056|consen 457 LLAGSLLCAYR-VTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQ 535 (790)
T ss_pred Hhhhhheeeee-eeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccC
Confidence 11112222332 33588999999999999999999999999999999999999999999997655433222222333456
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.|+|+|++|+|+++ +|+|+||||+++||+.+|+|||+|+||||++++|.++++..+|+|.++| +
T Consensus 536 G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 789999999999874 6899999999999999999999999999999999999999999999998 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
||.||||..+||+||..||.+|++ ...|++.++.+++++++.|-.+|+|+.|.|||+|-.||||||||||+||+++++|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 999999999999999999999997 5678888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc-CchHHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVN 817 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 817 (1467)
.|++|||+|||||.++++.| +.++....++||.|+|+||++++-+||.|+|++||+|+|.|+|+|++++ +|.|+++++
T Consensus 694 ~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq 772 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQ 772 (790)
T ss_pred cEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence 99999999999999999997 6788888899999999999999999999999999999999999999988 889999997
Q ss_pred Hhh
Q 000481 818 AHR 820 (1467)
Q Consensus 818 ~~~ 820 (1467)
.+.
T Consensus 773 ~qq 775 (790)
T KOG0056|consen 773 AQQ 775 (790)
T ss_pred HHH
Confidence 554
No 78
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-61 Score=559.59 Aligned_cols=545 Identities=21% Similarity=0.285 Sum_probs=394.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
.+..++ .|+.+++++++.++..+.....=.+-..+|....-... .....+..+++.=+..+.+++..+.-...+....
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333334 66677777766665555544444444555543221111 1111222222222334555555555555677788
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVGLGALPGL 424 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L--~~~lg~~~l~gl 424 (1467)
.++-+.++..+|+|....++....+..+||+.|++..|++.+++........|...+-++.++.+. +.-++.+.+.++
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 899999999999999999998888899999999999999999997665555555444333333333 333344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000481 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRKAYG 503 (1467)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~-~~~~~~~ 503 (1467)
..++..+++...+.+.-++..++..+.+..--+...|.+.|....+++|.++.+.+.++..-+.-.+..++. .+.....
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555666666766777777777777889999999999999999998776654332222222221 1211122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000481 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMI-PEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1467)
Q Consensus 504 ~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l-~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1467)
.++......+++..++......+.|..+...+..++........+...+ |..+....|...|.+|+.+.+..++....+
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~ 326 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP 326 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC
Confidence 2222223333332233333333445555322222222212222333333 377788999999999999998765543222
Q ss_pred cccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----
Q 000481 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1467)
Q Consensus 583 ~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 658 (1467)
. .. .+..+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||||+++|.|.++|++|+|..+|
T Consensus 327 ~-~~-~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~ 403 (573)
T COG4987 327 D-EQ-TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA 403 (573)
T ss_pred c-cc-cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh
Confidence 1 11 11222379999999999865 46899999999999999999999999999999999999999999999988
Q ss_pred ---------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 ---------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.+++++|.+.+|++|+|||+..++| .++|+..+++++++|++.++..|+|.+|.+||.|..||||||||+
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 4899999999999999999999987 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+|||++++|++++||||||.+||+.|++++.+.+ ....+|||+|+||||+..++++|+|+||++|+++++|+|++++.+
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll-~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALL-FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH-HHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 9999999999999999999999999999998654 455679999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000481 809 GTAFEQLVN 817 (1467)
Q Consensus 809 ~~~~~~~~~ 817 (1467)
++.|.++.+
T Consensus 563 ~g~~~~l~q 571 (573)
T COG4987 563 NGRYKRLYQ 571 (573)
T ss_pred ccHHHHHhc
Confidence 999887753
No 79
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.6e-62 Score=671.69 Aligned_cols=474 Identities=17% Similarity=0.231 Sum_probs=370.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000481 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1467)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 1039 (1467)
.+.+.+....+...+++++++.|..+|++..+|+++||+++|++.++... ..+..+....+.++..++++........+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56778888889999999999999999999999999999999999999875 34444444444444333322211001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1467)
Q Consensus 1040 ~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1467)
+.++++++...+..++.+..+..++.....+....+.+.|.++|+++||+|++|+.+.+++.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222233333334444444445556678899999999999999999999999998877665554433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000481 1120 WLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1467)
Q Consensus 1120 wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~ 1199 (1467)
+..+...... .++.+..+....+..+.+++|.+-.++++...+..++..+...+..+.....|.+|+.++++.+++.+.
T Consensus 525 ~~~~~~~~~~-~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIP-VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 2222111111 111112223333456789999988888888899999999999999999999999999999976554221
Q ss_pred CcCCCCCCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECC
Q 000481 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1467)
Q Consensus 1200 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG 1278 (1467)
. .++ ..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ~----~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 Q----NPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred c----cCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1 111 11234579999999999753 35799999999999999999999999999999999999999998763
Q ss_pred eeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1279 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++|+||||+|.||+|||||||....+++|++++++++.|++.++++.+|+|+||.|||+|.|||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 46889999999999999999999986667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAIL-QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~I-q~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||||||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+|+|.|+|+||
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999866 5667777789999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHH
Q 000481 1438 METNSSFSKLVAEYW 1452 (1467)
Q Consensus 1438 l~~~~~f~~lv~~~~ 1452 (1467)
+++++.|+++++++.
T Consensus 827 ~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SKSGSLFKKLMENAG 841 (1495)
T ss_pred HhcchhHHHHHHhcc
Confidence 998999999987654
No 80
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.3e-61 Score=610.26 Aligned_cols=471 Identities=17% Similarity=0.166 Sum_probs=358.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHH
Q 000481 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL 1024 (1467)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l 1024 (1467)
.++..++.++..++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333345667788888888999999999999999999999999999999999999999999987554 4566677777788
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccH---HHHHHHHH
Q 000481 1025 AIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYL 1101 (1467)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~---~~f~~~~~ 1101 (1467)
+.++++++.+|.+.++++..+++..++..+..+..+...+...+..+...+++.|.++|+.+++ ++.+ +.+.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 8888888899998877666555554444444444444444444566788999999999999995 5443 35566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALFLVLIP-RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~~~~~~-~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
+..+...+...... ++......+..+.. ...++.++... .+....+.++....+...+..++..+...+.++..
T Consensus 216 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 216 PDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554443322211 11111111111111 11111111111 11122333333344444566788888899999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+.+|+.++.+.+++++.. ...+. |..+.|+|+||+|+|++ .+++|+|+||+|+|||++||||+||||||||
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~~--~~~~~---~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEFP--RPQAF---PDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHHHhccccccccc--ccccc---CcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999987655432211 11111 12367999999999974 3469999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp 1339 (1467)
+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| . ...+|++++++++++++.+.+.. +
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~~~~~~~~~~l~~~~~~-~ 441 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G--KPANPALVEKWLERLKMAHKLEL-E 441 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c--CchHHHHHHHHHHHcCCchhhhc-c
Confidence 999999999999999999999999999999999999999999999999999 2 34688899999999998876653 4
Q ss_pred CCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhccc
Q 000481 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1340 ~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~ 1417 (1467)
+|. .+|.+||||||||++||||++++|+|||||||||+||++|++.+.+.+++.. +++|+|+||||++++..|
T Consensus 442 ~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~ 516 (547)
T PRK10522 442 DGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHA 516 (547)
T ss_pred ccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhC
Confidence 442 2488999999999999999999999999999999999999999999987654 489999999999999999
Q ss_pred CEEEEEeCCEEEEe-cChhH
Q 000481 1418 DMVMVLSYGKLLEY-DEPSK 1436 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~-g~p~~ 1436 (1467)
|+|++|++|+++|. |++.+
T Consensus 517 d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 517 DRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred CEEEEEECCEEEEecCCchh
Confidence 99999999999998 44444
No 81
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-62 Score=620.87 Aligned_cols=479 Identities=21% Similarity=0.268 Sum_probs=333.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .|+||+|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 25799999999999999999999999999999999999999999999864 6999999998875
Q ss_pred -CCHHHHHhcCCC-C----------------CHH-------HHHH---HHHHh-------cchHHHhcCCCCCCccccCC
Q 000481 672 -GSIRDNILYGKP-M----------------DKA-------RYDK---AIKAC-------ALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 672 -~ti~eNi~~g~~-~----------------~~~-------~~~~---~~~~~-------~l~~~~~~l~~g~~t~ig~~ 716 (1467)
.|++||+.++.. + ..+ ++.+ .++.+ .+...++.+.-. ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 499999987631 0 000 0000 01100 011122222111 12456
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
..+|||||||||+||||++.+|+++|||||||+||+.+.+++.+. +... +.|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 779999999999999999999999999999999999999988754 4433 3599999999999986 89999999999
Q ss_pred Ee-EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcc
Q 000481 796 IT-QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874 (1467)
Q Consensus 796 i~-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1467)
++ +.|+++++.+.... +. .....
T Consensus 238 i~~~~g~~~~~~~~~~~--~~-~~~~~----------------------------------------------------- 261 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAK--RL-AQEEK----------------------------------------------------- 261 (556)
T ss_pred EEEecCCHHHHHHHHHH--HH-HHHHH-----------------------------------------------------
Confidence 86 78988876542100 00 00000
Q ss_pred hHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHH
Q 000481 875 EDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954 (1467)
Q Consensus 875 ~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 954 (1467)
..+.... -++.
T Consensus 262 ~~~~~~~----------~~~~----------------------------------------------------------- 272 (556)
T PRK11819 262 QEAARQK----------ALKR----------------------------------------------------------- 272 (556)
T ss_pred HHHHHHH----------HHHH-----------------------------------------------------------
Confidence 0000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1467)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1034 (1467)
+..
T Consensus 273 ---------------~~~-------------------------------------------------------------- 275 (556)
T PRK11819 273 ---------------ELE-------------------------------------------------------------- 275 (556)
T ss_pred ---------------HHH--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1467)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1114 (1467)
..++ ++. + + ..
T Consensus 276 --------------------------~~~~------~~~---------~----~----~~-------------------- 286 (556)
T PRK11819 276 --------------------------WVRQ------SPK---------A----R----QA-------------------- 286 (556)
T ss_pred --------------------------HHHH------hhh---------h----h----HH--------------------
Confidence 0000 000 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Q 000481 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194 (1467)
Q Consensus 1115 ~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~ 1194 (1467)
..+......+|..+. .+
T Consensus 287 -------------------------------------------------------------~~~~~~~~~~~~~~~--~~ 303 (556)
T PRK11819 287 -------------------------------------------------------------KSKARLARYEELLSE--EY 303 (556)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhhcc--cc
Confidence 000000000111000 00
Q ss_pred CCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceE
Q 000481 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274 (1467)
Q Consensus 1195 ~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I 1274 (1467)
.+.+.......++...+.+.-|+++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 381 (556)
T PRK11819 304 QKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381 (556)
T ss_pred cccCCCceeecCCCCCCCCeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 000000000001111112336999999999953 359999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhhccEEeccCC-cccc-cchHHhcCCCC----C-CCHHHHHHHHHHcCCchHHhhCCCCcccccc
Q 000481 1275 LIDGVDICSMGLKDLRVKLSIIPQEP-TLFR-GSVRTNLDPLG----L-YSDDEIWKALEKCQLKTTISSLPNKLDSSVS 1347 (1467)
Q Consensus 1275 ~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~----~-~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~ 1347 (1467)
.+++ + .+++|+||++ .++. -|+++|+.... . ..+++..++++..++.+.. .+..+
T Consensus 382 ~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~- 443 (556)
T PRK11819 382 KIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD------QQKKV- 443 (556)
T ss_pred EECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH------hcCch-
Confidence 9965 2 2699999997 5665 49999985211 1 1234455677777764211 22233
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeC-
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY- 1425 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~- 1425 (1467)
..||||||||++||||++.+|++|||||||++||..+...+.+.|++. + .|+|+|||+++.+.. ||+|++|++
T Consensus 444 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~ 518 (556)
T PRK11819 444 ---GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGD 518 (556)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999875 4 489999999998876 999999996
Q ss_pred CEEEE-ecChhHHhc
Q 000481 1426 GKLLE-YDEPSKLME 1439 (1467)
Q Consensus 1426 G~ivE-~g~p~~Ll~ 1439 (1467)
|++.+ .|+++++++
T Consensus 519 g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 519 SQVEWFEGNFQEYEE 533 (556)
T ss_pred CeEEEecCCHHHHHH
Confidence 88875 677877766
No 82
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.9e-62 Score=619.71 Aligned_cols=479 Identities=22% Similarity=0.289 Sum_probs=334.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
-++++|++++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ .|+||+|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4889999999962 24699999999999999999999999999999999999999999999874 6999999998864
Q ss_pred -CCHHHHHhcCCC-------------------CC--------HHHHHHHHHHhcch-------HHHhcCCCCCCccccCC
Q 000481 672 -GSIRDNILYGKP-------------------MD--------KARYDKAIKACALD-------KDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 672 -~ti~eNi~~g~~-------------------~~--------~~~~~~~~~~~~l~-------~~~~~l~~g~~t~ig~~ 716 (1467)
.|++|||.++.. .+ .+++.++++.++.. +-++.+... ....+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 599999987631 01 01233344444432 122222211 12456
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+ ... ++|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L-~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHL-QEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHH-HhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 7899999999999999999999999999999999999999887643 332 3699999999999986 89999999999
Q ss_pred Ee-EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcc
Q 000481 796 IT-QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874 (1467)
Q Consensus 796 i~-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1467)
++ ..|+++++.+.... +. .....
T Consensus 236 i~~~~g~~~~~~~~~~~--~~-~~~~~----------------------------------------------------- 259 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEK--RL-EQEEK----------------------------------------------------- 259 (552)
T ss_pred EEEecCCHHHHHHHHHH--HH-HHHHH-----------------------------------------------------
Confidence 76 78998887542100 00 00000
Q ss_pred hHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHH
Q 000481 875 EDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954 (1467)
Q Consensus 875 ~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 954 (1467)
+.+. +...+... .-|+
T Consensus 260 ~~~~----------~~~~~~~~-----------------------~~~~------------------------------- 275 (552)
T TIGR03719 260 EESA----------RQKALKRE-----------------------LEWV------------------------------- 275 (552)
T ss_pred HHHH----------HHHHHHHH-----------------------HHHH-------------------------------
Confidence 0000 00000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1467)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1034 (1467)
T Consensus 276 -------------------------------------------------------------------------------- 275 (552)
T TIGR03719 276 -------------------------------------------------------------------------------- 275 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1467)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1114 (1467)
. + .+. ..+ + +.
T Consensus 276 -----------------~-----------~------~~~---~~~---------~---------~~-------------- 286 (552)
T TIGR03719 276 -----------------R-----------S------SPK---ARQ---------A---------KS-------------- 286 (552)
T ss_pred -----------------H-----------h------hhh---hHH---------H---------HH--------------
Confidence 0 0 000 000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Q 000481 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194 (1467)
Q Consensus 1115 ~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~ 1194 (1467)
.......++..+ ..+
T Consensus 287 ---------------------------------------------------------------~~~~~~~~~~~~--~~~ 301 (552)
T TIGR03719 287 ---------------------------------------------------------------KARLARYEELLS--QEF 301 (552)
T ss_pred ---------------------------------------------------------------HHHHHHHHhhhh--hcc
Confidence 000000011110 000
Q ss_pred CCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceE
Q 000481 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274 (1467)
Q Consensus 1195 ~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I 1274 (1467)
+..+.......+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i 379 (552)
T TIGR03719 302 QKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379 (552)
T ss_pred cccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence 000000000000000011235999999999953 359999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhhccEEeccCCc-ccc-cchHHhcCCC-C--CC--CHHHHHHHHHHcCCchHHhhCCCCcccccc
Q 000481 1275 LIDGVDICSMGLKDLRVKLSIIPQEPT-LFR-GSVRTNLDPL-G--LY--SDDEIWKALEKCQLKTTISSLPNKLDSSVS 1347 (1467)
Q Consensus 1275 ~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-gTIR~NLdp~-~--~~--sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~ 1347 (1467)
.+++ + .+|+|+||++. ++. -|+++|+... . .. .+.+..++++..++.+.. .+.++
T Consensus 380 ~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~- 441 (552)
T TIGR03719 380 KIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQKKV- 441 (552)
T ss_pred EECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcCch-
Confidence 9965 2 16999999973 665 4999998521 1 11 133455677777764211 12222
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeC-
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY- 1425 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~- 1425 (1467)
..||||||||++||||++.+|++|||||||++||..+...+.+.|++. . .|||+|+|+++.+.. ||+|++|++
T Consensus 442 ---~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 442 ---GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred ---hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999976 3 489999999999876 999999997
Q ss_pred CEEEEe-cChhHHhc
Q 000481 1426 GKLLEY-DEPSKLME 1439 (1467)
Q Consensus 1426 G~ivE~-g~p~~Ll~ 1439 (1467)
|+++++ |++++..+
T Consensus 517 ~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 517 SHVEWFEGNYSEYEE 531 (552)
T ss_pred CeEEEeCCCHHHHHH
Confidence 688754 66666544
No 83
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-63 Score=550.80 Aligned_cols=453 Identities=25% Similarity=0.433 Sum_probs=347.4
Q ss_pred CcEEEEeEEEEeCCC-CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 000481 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 658 (1467)
.-++++|.+.++... ....++++|||+|++||.+|+||+||||||-..++++|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 357788888777532 346799999999999999999999999999999999999975 468998876
Q ss_pred ---------eEEEEccCCcC-CC--CCHH----HHHhcCCCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000481 659 ---------SIAYVSQTSWI-QS--GSIR----DNILYGKPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1467)
Q Consensus 659 ---------~i~yv~Q~~~l-~~--~ti~----eNi~~g~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~ 718 (1467)
+|++++|+|-- .| -||. |-|...+... +++..+.++..++.+--. .+.....
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 59999999853 23 2554 4444444333 344555566666543221 2234567
Q ss_pred ccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 719 ~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
.|||||||||.||.||..+||+||-||||.|||..+..+|.+.+.... ..|-.+++|||++..+++ ||+|+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 999999999999999999999999999999999999999986544332 348899999999999987 899999999999
Q ss_pred eEecChHHHHhcCc-hHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcch
Q 000481 797 TQSGNYQELLLAGT-AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTE 875 (1467)
Q Consensus 797 ~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1467)
+|.|+.+++..... .|.+..-+
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------------- 259 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLA--------------------------------------------------------- 259 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHh---------------------------------------------------------
Confidence 99998777654321 01100000
Q ss_pred HHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHH
Q 000481 876 DEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFR 955 (1467)
Q Consensus 876 ~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~ 955 (1467)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000481 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTW 1035 (1467)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 1035 (1467)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1036 QVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTN 1115 (1467)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~ 1115 (1467)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC
Q 000481 1116 GVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPP 1195 (1467)
Q Consensus 1116 ~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~ 1195 (1467)
..|.
T Consensus 260 ----------------------------------------------------------------------------aeP~ 263 (534)
T COG4172 260 ----------------------------------------------------------------------------AEPS 263 (534)
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 0000
Q ss_pred CCCCCcCCCCCCCCCCCcceEEEEEEEEEeCC---------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 000481 1196 EPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP---------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1196 e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl 1266 (1467)
-. .+|..-...--++.+|+.+.|+- +.-.+.+||||+.++||++||||+||||||||-++|+|+
T Consensus 264 g~-------~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL 336 (534)
T COG4172 264 GD-------PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336 (534)
T ss_pred CC-------CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh
Confidence 00 01100011224677777777731 112478999999999999999999999999999999999
Q ss_pred cCCCcceEEECCeeCCCCCHHH---HhhccEEeccCCc--ccc-cchHHhcC-------CCC--CCCHHHHHHHHHHcCC
Q 000481 1267 VEPAGGSILIDGVDICSMGLKD---LRVKLSIIPQEPT--LFR-GSVRTNLD-------PLG--LYSDDEIWKALEKCQL 1331 (1467)
Q Consensus 1267 ~~~~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp~--LF~-gTIR~NLd-------p~~--~~sd~ei~~aL~~~~l 1331 (1467)
.+++ |+|.++|.||...+.++ +|+++-+|+|||+ |=+ .||.+-+. |-. .-.|+.+.+||+.+||
T Consensus 337 ~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGL 415 (534)
T COG4172 337 IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL 415 (534)
T ss_pred cCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCC
Confidence 9876 99999999999988776 6899999999996 211 24443331 211 1135678999999999
Q ss_pred chHHhh-CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEc
Q 000481 1332 KTTISS-LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVA 1408 (1467)
Q Consensus 1332 ~~~i~~-lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IA 1408 (1467)
+.-..+ .| ..+|||||||||||||+.-+|++++||||||+||..-.+.|-+.+|+.- .+-+-++|+
T Consensus 416 Dp~~r~RYP-----------hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFIS 484 (534)
T COG4172 416 DPATRNRYP-----------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS 484 (534)
T ss_pred ChhHhhcCC-----------cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 865432 33 3589999999999999999999999999999999999999999998643 467999999
Q ss_pred cCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCChhH
Q 000481 1409 HRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1409 HRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~ 1445 (1467)
|+|..++. ||+|+||.+|+|||+|+-+++++ ++..|-
T Consensus 485 HDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 485 HDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred ccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHH
Confidence 99999976 99999999999999999999998 565553
No 84
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-60 Score=656.18 Aligned_cols=473 Identities=19% Similarity=0.234 Sum_probs=353.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1467)
Q Consensus 342 ~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1467)
..+.+.+.-..+...+|++.++.+..+++++++|+|+|++++|++.+.+... .+..+....+.++.+++++.....+..
T Consensus 977 ~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~ 1056 (1622)
T PLN03130 977 LIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL 1056 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888999999999999999999999999999999987543 344444555555554444433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1467)
Q Consensus 421 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~ 500 (1467)
++.+++++++..+..++.+..++.++.....+....+..+|.++|+++||.|++|+.|.+...+..+...+......
T Consensus 1057 ~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~--- 1133 (1622)
T PLN03130 1057 WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNM--- 1133 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 22222222222222222333333444444555667788999999999999999999888776655554433221111
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-HhCCCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 501 AYGTVIYWMSPTIISSVI-FLGCA-LTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1467)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~-f~~~~-l~~~~~Lt-----~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL 573 (1467)
...........++..+++ +++.. ....+..+ ++.+-.++++...+..++..+......+.++.+|++|+.+++
T Consensus 1134 ~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~ 1213 (1622)
T PLN03130 1134 SSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYI 1213 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111000111111111 22222 22222111 233334445556666777777788888899999999999999
Q ss_pred cCCCCCCcccc-ccccc--CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC
Q 000481 574 LDHELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650 (1467)
Q Consensus 574 ~~~e~~~~~~~-~~~~~--~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 650 (1467)
+.++..+...+ ..+.+ +..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|+
T Consensus 1214 ~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~ 1292 (1622)
T PLN03130 1214 DLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292 (1622)
T ss_pred CCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 76543321111 11111 234679999999999754 357999999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000481 651 SGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1467)
Q Consensus 651 ~G~i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 717 (1467)
+|+|.++| +|+||||+|.+|++||||||.++.+++++++.++++.|++++.++.+|+|++|.|||+|
T Consensus 1293 ~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred CceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 99999988 49999999999999999999999889999999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEe
Q 000481 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1467)
Q Consensus 718 ~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1467)
.+||||||||++||||++++|+|+|||||||+||+++++.|. +.++...+++|+|+|+||++++..||+|+||++|+|+
T Consensus 1373 ~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999875 5566667899999999999999999999999999999
Q ss_pred EecChHHHHhc-CchHHHHHHHh
Q 000481 798 QSGNYQELLLA-GTAFEQLVNAH 819 (1467)
Q Consensus 798 ~~G~~~~l~~~-~~~~~~~~~~~ 819 (1467)
|.|+|+||++. ++.|.++++..
T Consensus 1452 E~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1452 EFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999987 58899988654
No 85
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-61 Score=616.67 Aligned_cols=200 Identities=21% Similarity=0.327 Sum_probs=167.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 6999999999953 45999999999999999999999999999999999999999999999741 3699
Q ss_pred EeccCC--cccc-cchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccC
Q 000481 1295 IIPQEP--TLFR-GSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370 (1467)
Q Consensus 1295 iIpQdp--~LF~-gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~ 1370 (1467)
|+||++ .+.. .|+.+++... ....++++.+.|+..++.... .+.++ ..||||||||++||||++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~~----~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK------VTEET----RRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH------hcCch----hhCCHHHHHHHHHHHHHhcC
Confidence 999985 3443 3788776311 123456677888888774211 22233 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEE-EecChhHHhc
Q 000481 1371 NRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL-EYDEPSKLME 1439 (1467)
Q Consensus 1371 ~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv-E~g~p~~Ll~ 1439 (1467)
|++|||||||++||..+...+.+.|++. . .|||+|+|++..+.. ||+|++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999875 4 599999999999976 9999999999998 5788888643
No 86
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.3e-59 Score=639.85 Aligned_cols=468 Identities=15% Similarity=0.183 Sum_probs=359.1
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...+...+|++.++.+..+++++++|+++|++++|++.+.+.+.. +..+....+.++.++++++....+..++.+++++
T Consensus 1030 ~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~ 1109 (1560)
T PTZ00243 1030 SRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGY 1109 (1560)
T ss_pred HHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999886542 4444455555555555444333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~~~~~~~~~ 507 (1467)
+...+...+.+..+..++.....++...+.++|.++|+++||.|++|+.|.++..+.-+...+.... ............
T Consensus 1110 ~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~ 1189 (1560)
T PTZ00243 1110 LYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVE 1189 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333344444555555566677778999999999999999999998877665544433322111 111111111111
Q ss_pred HHHHHHHHHHHHHH--HHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cc--
Q 000481 508 WMSPTIISSVIFLG--CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD-- 582 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~--~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~-~~-- 582 (1467)
.+..+++.++.+++ ......+.++++.+..++.+...+..|+..+...+..+.++.+|++|+.++++..+.++ ..
T Consensus 1190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~ 1269 (1560)
T PTZ00243 1190 FLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELD 1269 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 12222222222222 12233456789988888888899999999999999999999999999999985322110 00
Q ss_pred ---------------------ccc-c-----cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCC
Q 000481 583 ---------------------VRR-I-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAG 635 (1467)
Q Consensus 583 ---------------------~~~-~-----~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsG 635 (1467)
.+. . +..+..+.|+|+|++|+|+++ ..++|+|+||+|++||++||||++|||
T Consensus 1270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSG 1348 (1560)
T PTZ00243 1270 EEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSG 1348 (1560)
T ss_pred ccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCC
Confidence 000 0 001123579999999999754 346999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHH
Q 000481 636 KSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1467)
Q Consensus 636 KSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~ 702 (1467)
||||+++|+|+++|++|+|.++| .|+||||+|.+|++||||||..+.++++++++++++.|++++.+
T Consensus 1349 KSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I 1428 (1560)
T PTZ00243 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERV 1428 (1560)
T ss_pred HHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHH
Confidence 99999999999999999999988 49999999999999999999987788999999999999999999
Q ss_pred hcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC-CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcch
Q 000481 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1467)
Q Consensus 703 ~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~-~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 781 (1467)
+.+|+|++|.|||+|.+||||||||++||||++++ |+|+|||||||+||+++++.|. +.++...+++|+|+|+||++.
T Consensus 1429 ~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1429 ASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIAHRLHT 1507 (1560)
T ss_pred hhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEeccHHH
Confidence 99999999999999999999999999999999996 8999999999999999999885 556666789999999999999
Q ss_pred hhcCCEEEEEeCCeEeEecChHHHHhc-CchHHHHHHHh
Q 000481 782 LSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819 (1467)
Q Consensus 782 l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~~ 819 (1467)
+..||+|+||++|+|++.|+|+|++++ ++.|.++++..
T Consensus 1508 i~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999974 78899887653
No 87
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.2e-59 Score=540.17 Aligned_cols=487 Identities=19% Similarity=0.259 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHH-HHHHHHH
Q 000481 942 AGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI-VFVAASG 1020 (1467)
Q Consensus 942 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l-~~~~~~~ 1020 (1467)
.++.++..++.++|+.+..+.+.+..+.+...++...+++|..--...+....+ +|.+.+..++...- .-++..-
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc
Confidence 344556677888999999999999999999999999988887644333333444 35555555443211 1111111
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1100 (1467)
. .-..+++++.+.|++.++++...++...+...--...++--+..++..+.-..+..-+..+..+|+|.|+.....+++
T Consensus 146 W-~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW 224 (580)
T COG4618 146 W-MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRW 224 (580)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHH
Confidence 1 112234445555655544433332222222211122222222233334445678888999999999999987777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQ-NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~-~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
.+....+....-.....+.-++.....+- .+-..+.++..+++..+++++|.+-..-...-..-.++-..+..|..+..
T Consensus 225 ~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~ 304 (580)
T COG4618 225 GRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVA 304 (580)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 65443333222222222211211111111 12233445556778899999997644433333445677788899999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...|..|+.+.++..++..... .-|. .+|.+.++++++.-++...|+|+||||+++|||-+|||||||||||||
T Consensus 305 Ar~s~~Rl~~lL~~~p~~~~~m---~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTL 378 (580)
T COG4618 305 ARQSYKRLNELLAELPAAAERM---PLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTL 378 (580)
T ss_pred HHHHHHHHHHHHHhCccccCCC---CCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHH
Confidence 9999999999987655442211 1111 268999999999776666789999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSL 1338 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~l 1338 (1467)
.++|.|.+.|.+|.|.+||-|+.+.+.+++-++|||.|||-.||+|||+|||.-|+ +.+++.|.+|.+.++.||.|.++
T Consensus 379 aR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~l 458 (580)
T COG4618 379 ARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRL 458 (580)
T ss_pred HHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998787 67788899999999999999999
Q ss_pred CCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhccc
Q 000481 1339 PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1339 p~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~~ 1417 (1467)
|+||||.|||+|..|||||||||+||||+..+|+++|||||.||||.+-|+.+.++|.+. .+|+|+|+||||.+.+..+
T Consensus 459 P~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 459 PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred cCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999988764 4699999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhc
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+|+||++|++..||+-+|.++
T Consensus 539 Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 539 DKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred ceeeeecCChHHhcCCHHHHHH
Confidence 9999999999999999999887
No 88
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.6e-59 Score=600.46 Aligned_cols=199 Identities=21% Similarity=0.342 Sum_probs=164.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999953 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EeccCC-ccccc-chHHhcCCC-CCC--C--HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1295 IIPQEP-TLFRG-SVRTNLDPL-GLY--S--DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1295 iIpQdp-~LF~g-TIR~NLdp~-~~~--s--d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
|+||++ .++.. |+++|+... ... . +.++.+.|+..++... ..+.++ ..||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK------RAMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH------HHhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46654 999998531 111 2 4456677777766421 123333 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe-CCEEEEe-cChhHHh
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS-YGKLLEY-DEPSKLM 1438 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~-~G~ivE~-g~p~~Ll 1438 (1467)
+++|++|||||||++||..+...+.+.+++. +.|||+|||+.+.+.. ||+|++|+ +|++.++ |++++-+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999999875 5699999999999865 99999998 8999886 5666653
No 89
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.1e-58 Score=579.75 Aligned_cols=510 Identities=17% Similarity=0.148 Sum_probs=375.4
Q ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 271 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
+++ .+++.++++.++.++..++.++.|.+++.+++...... . ...+.+++ +++ +..++.....+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~-~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q-GSLFSFGG-LCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c-hHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 556 77888888888899999999999999988876321110 0 11111221 111 22233333344566788888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
...++..+|+|.++++...+++.++|++++++++|++.++++...+.......+.+++++++++.+-...+++.++++++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998655444444444555555555444433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLIE----SRREKEFKWLSEAQLRKAYG 503 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~--~f~~~i~----~~R~~E~~~l~~~~~~~~~~ 503 (1467)
...+..+..++.++...+.++..++..+.+.|.+.|+++||.++.|+ ...++.+ +.++...+..+ ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEIL---IFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHH
Confidence 33334445566666677777888889999999999999999999853 2233332 22222221111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc--
Q 000481 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND-- 581 (1467)
Q Consensus 504 ~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~-- 581 (1467)
.+..........++.+++.+ .+.+|.+.+++++.+...+..|+..+...+..+.++++|.+||.++++.++.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11111111111222222222 1578999999999999999999999999999999999999999999853211100
Q ss_pred -ccccc-----cccCCCCcEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcE
Q 000481 582 -DVRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1467)
Q Consensus 582 -~~~~~-----~~~~~~~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 653 (1467)
..+.. +.......|+++|++|+|++.+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 00000 1111235799999999997532 246999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCcc
Q 000481 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1467)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 720 (1467)
|.++| .++||+|++++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999995 23456788899999999999999999999984 789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 721 SGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
|||||||++||||++++|+|+|||||||+||+++++.+.+.+++. ..+++|+|+||||++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999998766543 3468999999999999999999999999999864
No 90
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.9e-58 Score=527.66 Aligned_cols=529 Identities=22% Similarity=0.283 Sum_probs=425.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
...+....+++.++..++++.+-.++.+..|+.+-.+-|-+-.. .+......+.++....++++.++...-.+...|++
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S-~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPS-RSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666788888888899999999999999887777654322 12223334444455556666666666667788999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-----~~~~~~~~~l~i~~~~~~L~~~lg~~~l 421 (1467)
.++-..|...+|.-+.+.+..........+.. .|.+.+..|.. .+....-.|+-+.++ +++.-.+|+.++
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG~~a~ 166 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLGLIAL 166 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999999875554332222222222 46677766543 233333345544433 344567899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501 (1467)
Q Consensus 422 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~ 501 (1467)
+|.++++.+..+|-. ..++-.++..+..-+|....+-.+.|..+|+..|..+...++..+...+.++..........
T Consensus 167 ~ga~iLv~la~ln~~---~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~ 243 (580)
T COG4618 167 AGAIILVVLALLNER---ATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG 243 (580)
T ss_pred HHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 888877777666643 34455566677788899999999999999999999999999999888888877666554433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000481 502 -YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1467)
Q Consensus 502 -~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 580 (1467)
+....-.+-..+-+.++-+|.+++.++.+|+|.+++.-.+....-.|+......+.++..|+.|.+|++++|.......
T Consensus 244 ~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~ 323 (580)
T COG4618 244 AFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 2222222333445566667778888899999999999999999999999999999999999999999999997643322
Q ss_pred cccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--
Q 000481 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1467)
Q Consensus 581 ~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 658 (1467)
+..+.+.+.+.+.++++++.= ++.++|+|+|+||++++||-++||||||||||||.++|.|..+|.+|.|.++|
T Consensus 324 ---~~m~LP~P~g~L~Ve~l~~~P-Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~ 399 (580)
T COG4618 324 ---ERMPLPAPQGALSVERLTAAP-PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD 399 (580)
T ss_pred ---CCCCCCCCCceeeEeeeeecC-CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence 234455667889999999965 45568999999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEccCCcCCCCCHHHHHh-cCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 -----------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 -----------~i~yv~Q~~~l~~~ti~eNi~-~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
+|||.||+-.+|.|||.|||. |+++.|.+++-++.+.++.++-|-.+|+|++|.||+.|.+|||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 599999999999999999998 77789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
||+||||+|.||.+++||||-|+||.+.+..+.+.+.....+|.|+|+||||++.+..+|+|.+|+||++...|+-+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999999999999999999999999999877777777899999999999999999999999999999999999987
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
++
T Consensus 560 a~ 561 (580)
T COG4618 560 AK 561 (580)
T ss_pred HH
Confidence 53
No 91
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-58 Score=626.16 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=176.7
Q ss_pred eEEEEEEEEEeCC-----------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CcceEEECCeeC
Q 000481 1215 RIELRQLKIRYRP-----------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP--AGGSILIDGVDI 1281 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~-----------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~--~~G~I~IDG~dI 1281 (1467)
.+.|+||++.++. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998741 223599999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHHhhccEEeccCCccccc-chHHhcCCC------CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1282 CSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPL------GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1282 ~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~------~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
++ ...|+.++||+|++.++.. |++|||... ...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 53 4567889999999988764 999998410 122333 36678888887653 466666443
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh-h-cccCEEEEEeC-
Q 000481 1351 -ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPT-V-IDSDMVMVLSY- 1425 (1467)
Q Consensus 1351 -~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVl~~- 1425 (1467)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. + ..+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999998754 47999999999984 4 56999999996
Q ss_pred CEEEEecChh
Q 000481 1426 GKLLEYDEPS 1435 (1467)
Q Consensus 1426 G~ivE~g~p~ 1435 (1467)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 92
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.1e-58 Score=591.04 Aligned_cols=199 Identities=19% Similarity=0.269 Sum_probs=164.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
.-|+++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999533 3599999999999999999999999999999999999999999999976 3579
Q ss_pred EEeccCCcccccchHHhcC-----CCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1294 SIIPQEPTLFRGSVRTNLD-----PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLd-----p~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
+|+||++. ...++.+|.. .+...+++++.++|+..++.+... +. ....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~------~~----~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQ----PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh------cC----CccccCHHHHHHHHHHHHHh
Confidence 99999973 2224444421 122346788889999998863221 11 23479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEE-EecChhHH
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL-EYDEPSKL 1437 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv-E~g~p~~L 1437 (1467)
++|++|||||||++||..+...+.+.+++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999988888888764 4 599999999999976 9999999999998 45776654
No 93
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.6e-56 Score=612.62 Aligned_cols=473 Identities=19% Similarity=0.190 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1467)
Q Consensus 342 ~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1467)
..+.+.+.-..+...++++.++.+..++++.++|+++|+++.|++.+.+... .+..+....+.+++.+++++...++..
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777788999999999999999999999999999999987544 344444455555555555544444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLR 499 (1467)
Q Consensus 421 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~ 499 (1467)
++.+++++++..+..++.+..+..++.....+....+...|.++|+.+||+|++|+.|.++..+.-+...+.... ....
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222223333334444445555566677788899999999999999999998887776655432221111 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000481 500 KAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1467)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~ 579 (1467)
..+...+..+...++..+.+++ ++....+++.+-.+++++..+..++..+...+..+..+.+|++||.+|++.++..
T Consensus 1109 ~wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~ 1185 (1490)
T TIGR01271 1109 RWFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEE 1185 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1111111111111111111111 1112345566666677777788888888888999999999999999998654332
Q ss_pred Ccccc--------------c-ccc--cCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHH
Q 000481 580 NDDVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYA 642 (1467)
Q Consensus 580 ~~~~~--------------~-~~~--~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ 642 (1467)
....+ . .++ .+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++
T Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~l 1264 (1490)
T TIGR01271 1186 PRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264 (1490)
T ss_pred ccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 11100 0 000 1234679999999999764 4689999999999999999999999999999999
Q ss_pred HhCCCCCCCcEEEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCC
Q 000481 643 ILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709 (1467)
Q Consensus 643 l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~ 709 (1467)
|+|+++ .+|+|.++| +|+||||+|.+|++||||||....+++++++.++++.|++.+.+..+|+|.
T Consensus 1265 L~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred HhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccc
Confidence 999997 799999988 499999999999999999998777788999999999999999999999999
Q ss_pred CccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEE
Q 000481 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1467)
Q Consensus 710 ~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1467)
+|.|||+|.+||||||||++||||++++|+|+|||||||+||+++++.|.+ .++...+++|+|+||||++.+..+|+|+
T Consensus 1344 dt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1344 DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred ccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999998854 5566678899999999999999999999
Q ss_pred EEeCCeEeEecChHHHHhcCchHHHHHHHhh
Q 000481 790 VLEGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1467)
Q Consensus 790 ~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~ 820 (1467)
+|++|+|++.|+|++|++.++.|.++++...
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 9999999999999999988889999987544
No 94
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.7e-58 Score=560.96 Aligned_cols=482 Identities=23% Similarity=0.328 Sum_probs=345.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
.|.++|++++|+ ++++++|+|+++.+|+.+||||+||+||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478999999995 36799999999999999999999999999999999999999999999987 7999999998875
Q ss_pred C-CHHHHHhcCCCCC---HHHHHHHHH------------------H-------hcchHHHhcCCCCCCccccCCCCccCh
Q 000481 672 G-SIRDNILYGKPMD---KARYDKAIK------------------A-------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 672 ~-ti~eNi~~g~~~~---~~~~~~~~~------------------~-------~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
. ||.|.+.-|...- ..+++++.. . ......+..|...+ + .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~--~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD--E-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc--c-cCchhhcCH
Confidence 4 9999999875311 111222111 0 11112222232222 1 356678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEe-Eec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~G 800 (1467)
|||.||+|||||..+||+|||||||++||.++.+++-+.+ . ..+| |+|+|||+.+||.. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L-~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL-K-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H-hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 9999999999999999999999999999999999985543 2 3456 99999999999998 7999999999886 788
Q ss_pred ChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhh
Q 000481 801 NYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEME 880 (1467)
Q Consensus 801 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 880 (1467)
+|+..++....-.+......+ + .+++.+
T Consensus 234 ny~~~~~~r~~~~~~~~~~~~--------------------------------------------------~--~~~~~~ 261 (530)
T COG0488 234 NYSSYLEQKAERLRQEAAAYE--------------------------------------------------K--QQKELA 261 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------------------------------------------------H--HHHHHH
Confidence 888776542111000000000 0 000000
Q ss_pred cCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 881 IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAA 960 (1467)
Q Consensus 881 ~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~ 960 (1467)
....++.
T Consensus 262 -------~~~~~i~------------------------------------------------------------------ 268 (530)
T COG0488 262 -------KEQEWIR------------------------------------------------------------------ 268 (530)
T ss_pred -------HHHHHHH------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000481 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1467)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1040 (1467)
|+.
T Consensus 269 ------------------------------------r~~----------------------------------------- 271 (530)
T COG0488 269 ------------------------------------RGK----------------------------------------- 271 (530)
T ss_pred ------------------------------------HHH-----------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1467)
Q Consensus 1041 ~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1467)
....+++
T Consensus 272 -------------~~~~~~k------------------------------------------------------------ 278 (530)
T COG0488 272 -------------AAASKAK------------------------------------------------------------ 278 (530)
T ss_pred -------------hccchHH------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh--hcCCCCCC
Q 000481 1121 LILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF--MHIPPEPP 1198 (1467)
Q Consensus 1121 l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~--~~~~~e~~ 1198 (1467)
..+..+...+|+.+- ...|....
T Consensus 279 -------------------------------------------------------~a~sr~k~l~k~~~~~~~~~~~~~~ 303 (530)
T COG0488 279 -------------------------------------------------------KAKSRIKRLEKLEARLAEERPVEEG 303 (530)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhhhhhccccccc
Confidence 000001111222211 00111100
Q ss_pred CCc-CCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEEC
Q 000481 1199 AIV-EDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277 (1467)
Q Consensus 1199 ~~~-~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~ID 1277 (1467)
... -...++..-..+--++++|+++.|.++ .++++++||.|++|++||||||+|+|||||+++|.|-..|.+|+|.+.
T Consensus 304 ~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g 382 (530)
T COG0488 304 KPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG 382 (530)
T ss_pred ccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC
Confidence 000 000011101123469999999999655 569999999999999999999999999999999999999999999987
Q ss_pred CeeCCCCCHHHHhhccEEeccCC-cccc-cchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1278 GVDICSMGLKDLRVKLSIIPQEP-TLFR-GSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1278 G~dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
- .-++||.+|+- .++. .|+-+++.... ...+.++...|.+.++..--. .++| ..||
T Consensus 383 ~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~------~~~v----~~LS 441 (530)
T COG0488 383 E-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ------EKPV----GVLS 441 (530)
T ss_pred C-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH------hCch----hhcC
Confidence 4 24699999997 4443 38888885433 334788999999998865332 3344 3699
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe-c
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY-D 1432 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~-g 1432 (1467)
||||-|+.||+.++.+|.+|||||||++||.+|-..+.++|.++ ..|||+|+|+-..+.. |++|+++++ ++.++ |
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g 518 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEG 518 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCC
Confidence 99999999999999999999999999999999999999999874 4599999999999977 999999999 88888 7
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
.+++.++
T Consensus 519 ~y~~y~~ 525 (530)
T COG0488 519 GYEDYLE 525 (530)
T ss_pred CHHHHHH
Confidence 8887765
No 95
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-55 Score=556.54 Aligned_cols=507 Identities=17% Similarity=0.174 Sum_probs=360.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1467)
+++.+++.+++.++...++.++..++.++. |++.+.++|..... ......+++++++..++ .....+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAV----TLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 456677778888888888888888888774 67778888754321 11111111111121121 22233445566
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1467)
Q Consensus 346 ~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~ 425 (1467)
+.++...++..+|+|.++++...++++++|+++|++++|++.+..+...+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777788888999999999999999999999999999999998755455566777777777777666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--cHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000481 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--WEEKFKSLIE----SRREKEFKWLSEAQLR 499 (1467)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~--~E~~f~~~i~----~~R~~E~~~l~~~~~~ 499 (1467)
++++...+...+.++.++..++.++..+++.+.++|.++|++++++.. .++.+.++.+ +.++...+..+ ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 232 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT---FH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH---HH
Confidence 554545556667788888888889999999999999999999997432 2233333333 33332222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000481 500 KAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1467)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~ 579 (1467)
.............++.+..+.+... ..+ +.+.+..+..++..+..|+..+...+..+.+++++.+|+.+++..++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 233 LSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1111111001101111111111111 112 2233333333344467899999999999999999999999997544322
Q ss_pred CcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-
Q 000481 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1467)
Q Consensus 580 ~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g- 658 (1467)
+.. ...+ .+..+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 310 ~~~-~~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 310 EFP-RPQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred ccc-cccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 111 1111 1112479999999999742 4799999999999999999999999999999999999999999999887
Q ss_pred ------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|+|.+|++|++|| +...++++.+++++.+++..++.. ++|. .+|.+|||||||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~q 456 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKK 456 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHH
Confidence 4999999999999999999 445667778888888877766542 3321 248899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
|++||||++++|+++|||||||+||+++++.+.+.+..... +++|+|+||||++.+..||+|++|++|++++.
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998776554332 58999999999999999999999999999976
No 96
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.5e-58 Score=573.54 Aligned_cols=191 Identities=24% Similarity=0.311 Sum_probs=162.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++|++++|.. ..|+++||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999953 25999999999999999999999999999999999999999999986 1599
Q ss_pred EeccCCcc-cccchHHhcCCC-CCC-CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1295 IIPQEPTL-FRGSVRTNLDPL-GLY-SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1295 iIpQdp~L-F~gTIR~NLdp~-~~~-sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
|+||++.+ ++.|+++|+... ..+ .+..+.++++..++.+... .++ .+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-------~~~----~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-------KNV----KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-------CCc----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 456999998521 112 2345677888888865433 233 369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
+||||||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999764 37899999999999875 999999965 8877766
No 97
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.8e-55 Score=563.46 Aligned_cols=508 Identities=11% Similarity=0.045 Sum_probs=392.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhcccC---ccc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 901 LLCLGVLAQSGFVGLQAAATYWLAYAIQIP---KIT-S----GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFS 972 (1467)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~-~----~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 972 (1467)
.+++.+++.++...+....+++.+..++.- +.. . ..++.+++++.++..+..++...+......+..+.+|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566677777777655421 111 1 11223333444455556666667777777888888888
Q ss_pred HHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 000481 973 GFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFV 1051 (1467)
Q Consensus 973 ~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1051 (1467)
+.+++....++.|||. ++|++.+|+++|++.+...+...+..++..++.+++.++.++. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888888889999997 8899999999999999999988888888888888877777665 7888877777667777777
Q ss_pred HHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1052 QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNL 1131 (1467)
Q Consensus 1052 ~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~ 1131 (1467)
.+++.+..+++.+......+...+.+.|.++|..+||+|+.++.+.+++.+..+...+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777777777777788899999999999999999999999999888887776666665555555555555544332
Q ss_pred HHHHH---HH-HHHHhcc----CcccHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC-
Q 000481 1132 TLFTA---AL-FLVLIPR----GYVAPGL-VGLSLSY---AFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP- 1198 (1467)
Q Consensus 1132 ~~~~~---~~-~~~~~~~----~~~~~g~-~g~~l~~---~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~- 1198 (1467)
..... .. ..++... |.++.|. ++..++| ..++..++..+...+.++.....+.+|+.++.+.+++..
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 11 1122222 5677664 3434444 456678888999999999999999999999987543211
Q ss_pred ------CCcC--CC-----CCC-----C-CCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1199 ------AIVE--DK-----RPP-----S-SWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1199 ------~~~~--~~-----~~~-----~-~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+ +. +++ . .....+.|+++||+++|+.+ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 00 000 0 00134679999999999643 469999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC--------CCCCHHHHHHHHHHcCC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--------GLYSDDEIWKALEKCQL 1331 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--------~~~sd~ei~~aL~~~~l 1331 (1467)
+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|+|+... ...++++++++++.+++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999875 6789999999999999999999521 23578899999999999
Q ss_pred chHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCc
Q 000481 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRV 1411 (1467)
Q Consensus 1332 ~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl 1411 (1467)
.+++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 999999876 56799999999999999999999999999999999999999999999874 89999999999
Q ss_pred hhhcccCEEEEEeC
Q 000481 1412 PTVIDSDMVMVLSY 1425 (1467)
Q Consensus 1412 ~ti~~~DrIlVl~~ 1425 (1467)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999974
No 98
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-56 Score=501.89 Aligned_cols=461 Identities=22% Similarity=0.294 Sum_probs=356.6
Q ss_pred HHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 351 ~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
..+.-..|.|.++|+..+..+..+|.+.--+..-.+.|+...++ +..+....+++.+..++++...||......++.++
T Consensus 15 r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~ 94 (497)
T COG5265 15 RVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVI 94 (497)
T ss_pred HHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 34445678899999988877788887765555444455544433 33445556888888888888888765444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDE-RLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL----RKAYGT 504 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~----~~~~~~ 504 (1467)
+..+......-.+...++.|+..|. ......+.|-+-.++|.|+-|+.+..+.....+...+.-.+... ......
T Consensus 95 lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~ 174 (497)
T COG5265 95 LYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQT 174 (497)
T ss_pred HHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3222222222222233444444444 44567789999999999999987766655544443332222211 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 000481 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 584 (1467)
.++.. ........+...+..+.+|.|.....-+++.++..|+..++.....+.|++.-.++..+.+..+-...+..+
T Consensus 175 ~I~~~---~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pd 251 (497)
T COG5265 175 AIFST---GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPD 251 (497)
T ss_pred HHHHH---HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCC
Confidence 11111 111222233334456899999999999999999999999999999999999999999988765432221111
Q ss_pred ccccc-CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 000481 585 RISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---- 659 (1467)
Q Consensus 585 ~~~~~-~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---- 659 (1467)
-.+.. ...+.|.|+|++|.|+++ +|+|+++||++++|+.+||||++|+||||++++|.++|++.+|.|.++|+
T Consensus 252 a~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 252 APPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred CccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 11111 335679999999999874 68999999999999999999999999999999999999999999999983
Q ss_pred ---------EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 660 ---------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 660 ---------i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
||.|||+..|||+|+..||.+|++ ..+++...+++++++.+.++.+|+|++|.|||+|-.|||||||||+
T Consensus 330 vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred hHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 999999999999999999999987 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+||+++++|+|++|||+|||||.+|++.| +..++...+|+|.++|+||++++-.||.|+||+||+|+|.|+|+||++.+
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~ 488 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcC
Confidence 99999999999999999999999999998 55667777999999999999999999999999999999999999999999
Q ss_pred chHHHHHH
Q 000481 810 TAFEQLVN 817 (1467)
Q Consensus 810 ~~~~~~~~ 817 (1467)
|.|++++.
T Consensus 489 g~ya~mw~ 496 (497)
T COG5265 489 GLYAEMWR 496 (497)
T ss_pred ChHHHHhc
Confidence 99998863
No 99
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-54 Score=559.58 Aligned_cols=487 Identities=21% Similarity=0.281 Sum_probs=379.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 000481 947 ASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAI 1026 (1467)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~ 1026 (1467)
+.+++.--..+...+.|.++...+-..++++.++..-.--...+.|+|+|-++.|.+.+++..++. ..+....++++.+
T Consensus 254 l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~ 332 (1381)
T KOG0054|consen 254 LQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILA 332 (1381)
T ss_pred HHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333333334455667888998999999999999998877777899999999999999999866543 3333444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHH
Q 000481 1027 IGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDI 1106 (1467)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~ 1106 (1467)
+.++...--...++.+.+++++..++.+..+..+..++.....+..-....+|.++|+++||.|+||+.|.++-.+.-+.
T Consensus 333 l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~ 412 (1381)
T KOG0054|consen 333 LYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQK 412 (1381)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHH
Confidence 43333221112233344444555556555555666666666667777889999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000481 1107 DASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVER 1186 (1467)
Q Consensus 1107 ~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveR 1186 (1467)
..+.............+.......++.+++....++...+..+|..+-.++++.-.+..++..+-.....+-+..+|++|
T Consensus 413 El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~R 492 (1381)
T KOG0054|consen 413 ELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKR 492 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544333333333222222222222222222222234556777777777777777777787777888888888999999
Q ss_pred HHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 000481 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265 (1467)
Q Consensus 1187 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~r 1265 (1467)
+.+|+..++.++..... ...-+.+-.|+++|.+|++.++ .++.|+||||+|++||.+||||++|||||||+++|+|
T Consensus 493 i~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLG 569 (1381)
T KOG0054|consen 493 LKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILG 569 (1381)
T ss_pred HHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999765443322211 1111334579999999999763 4459999999999999999999999999999999999
Q ss_pred ccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccc
Q 000481 1266 LVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1467)
Q Consensus 1266 l~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~ 1345 (1467)
-.+..+|++.++|. ++|+||.|.+|+|||||||-...+++++.-.++++.|+|+..++.+|.|=.|+
T Consensus 570 Em~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~Te 636 (1381)
T KOG0054|consen 570 EMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTE 636 (1381)
T ss_pred CcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcce
Confidence 99999999999993 99999999999999999997555688999999999999999999999999999
Q ss_pred cccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEe
Q 000481 1346 VSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLS 1424 (1467)
Q Consensus 1346 v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~-~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~ 1424 (1467)
|||+|.||||||||||+||||+.++++|.+||+|-|+||+++.+ +.++.|+...+++|+|.|||.++.+.+||+|+||+
T Consensus 637 IGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~ 716 (1381)
T KOG0054|consen 637 IGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLK 716 (1381)
T ss_pred ecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEec
Confidence 99999999999999999999999999999999999999998854 56778888889999999999999999999999999
Q ss_pred CCEEEEecChhHHhccCChhHHHHHH
Q 000481 1425 YGKLLEYDEPSKLMETNSSFSKLVAE 1450 (1467)
Q Consensus 1425 ~G~ivE~g~p~~Ll~~~~~f~~lv~~ 1450 (1467)
+|+|+|.|+|+||++.++.|.++..+
T Consensus 717 ~G~I~~~Gty~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 717 DGKIVESGTYEELLKSGGDFAELAHE 742 (1381)
T ss_pred CCeEecccCHHHHHhcchhHHHHhhc
Confidence 99999999999999988899888543
No 100
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-55 Score=520.05 Aligned_cols=442 Identities=25% Similarity=0.376 Sum_probs=335.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 659 (1467)
.-++++|++.+|+. .++|+|+||++.+||++|++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35889999999974 57999999999999999999999999999999999999999999999983
Q ss_pred -EEEEccCCcC-CCCCHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 -IAYVSQTSWI-QSGSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 -i~yv~Q~~~l-~~~ti~eNi~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
|+.|.|+.-+ .+.||.|||.+|++. |..+.++..++. ++.+....+ ......+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 9999999876 567999999998752 333333322221 111111111 235567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh-HHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY-QELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~-~~l~~~ 808 (1467)
|||+..+++|+|||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||+|.||+||+.+..++. .++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~--- 233 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET--- 233 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC---
Confidence 999999999999999999999999999998776777789999999999999876 999999999999864321 000
Q ss_pred CchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHH
Q 000481 809 GTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKP 888 (1467)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 888 (1467)
..++-
T Consensus 234 -----------------------------------------------------------------~~~~l---------- 238 (500)
T COG1129 234 -----------------------------------------------------------------SEDEL---------- 238 (500)
T ss_pred -----------------------------------------------------------------CHHHH----------
Confidence 00000
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 889 FMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASK 968 (1467)
Q Consensus 889 y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~ 968 (1467)
.+.
T Consensus 239 ----v~~------------------------------------------------------------------------- 241 (500)
T COG1129 239 ----VRL------------------------------------------------------------------------- 241 (500)
T ss_pred ----HHH-------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000481 969 AFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAV 1048 (1467)
Q Consensus 969 ~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1467)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T COG1129 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1049 RFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEAL 1128 (1467)
Q Consensus 1049 ~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~ 1128 (1467)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T COG1129 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCC
Q 000481 1129 QNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPS 1208 (1467)
Q Consensus 1129 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~ 1208 (1467)
++ | | +..+..++ +. ..
T Consensus 242 -------------Mv--G---------------------------------------r--~~~~~~~~-~~-~~------ 257 (500)
T COG1129 242 -------------MV--G---------------------------------------R--ELEDLFPE-PP-EE------ 257 (500)
T ss_pred -------------hh--C---------------------------------------c--chhhhccc-cc-cc------
Confidence 00 0 0 00000000 00 00
Q ss_pred CCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH-
Q 000481 1209 SWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK- 1287 (1467)
Q Consensus 1209 ~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~- 1287 (1467)
-+..-.++++|++..- .++|+||++++||.+||.|--|||+|-++++|||.-++.+|+|.+||.++.--+++
T Consensus 258 -~~~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 258 -GIGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred -CCCCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 0011246777776431 58999999999999999999999999999999999999999999999988776655
Q ss_pred HHhhccEEeccCCc---cc-ccchHHhcCCC--CCCCHH-HHHHHHHHcCCchHHhhCC---CCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEPT---LF-RGSVRTNLDPL--GLYSDD-EIWKALEKCQLKTTISSLP---NKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~---LF-~gTIR~NLdp~--~~~sd~-ei~~aL~~~~l~~~i~~lp---~gLdt~v~e~G~nLS~GQ 1357 (1467)
..+..|+|||-|-- +| ..+|++|+..- ..++.. -+...-++....+++..+. .+.+.++ .+||||.
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGN 406 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGN 406 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchh
Confidence 68999999998864 44 55999998421 111100 1222333333444555442 2334444 4799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc-ccCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p 1434 (1467)
+|+++|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++.+. -||||+||.+|+++..=+.
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999999999765 5799999999999998 5999999999999874333
No 101
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.5e-52 Score=533.12 Aligned_cols=504 Identities=16% Similarity=0.159 Sum_probs=365.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1467)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 355 (1467)
.++..+++.++.+++.+..|++.+.+++.+...+.. ... .+.+++++++..++.++. .+...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI----KYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999976533211 111 112222233333333333 33344555555555555
Q ss_pred HHHHHHHc----CCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000481 356 AVYQKQLK----LSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA-LPGLVLFLI 429 (1467)
Q Consensus 356 ~i~~k~l~----l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~-l~gl~~~~~ 429 (1467)
.++++.++ .+...+++ ++|++.+++++|++.+.+... .+..+...++.++.+++.++..++|.. ++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55555544 33334443 689999999999999987644 345555666777767777776555543 333334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK-AYGTVIYW 508 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~-~~~~~~~~ 508 (1467)
...+...+.+.+.+..++.++..++.....+|.++|+++||+|+.|+.+.++.++.-++..+..++..... .+..+..+
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55566777888888999999999999999999999999999999998877766665555444333322222 22222222
Q ss_pred HHHH--HHHHHHHHHH-HHhCC----CCCcHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000481 509 MSPT--IISSVIFLGC-ALTGS----APLNASTIFT-VLA---TLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1467)
Q Consensus 509 ~~~~--~~~~~~f~~~-~l~~~----~~Lt~~~~ft-~l~---l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e 577 (1467)
+... ......+++. ++... +.+|.+..+. +++ ++..+..|+..+.+.+..++++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1111122223 23222 5788887554 333 4677799999999999999999999999999996422
Q ss_pred CCC------ccccc-----------------ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCC
Q 000481 578 LNN------DDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1467)
Q Consensus 578 ~~~------~~~~~-----------------~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1467)
... +.... .......+.|+++|++|+|+++ +++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 100 00000 0001123469999999999642 4799999999999999999999999
Q ss_pred ChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCCCCHHHHHhcCC--------CCCHHHHHHHHHHhcchHHHhc
Q 000481 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1467)
Q Consensus 635 GKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~~ti~eNi~~g~--------~~~~~~~~~~~~~~~l~~~~~~ 704 (1467)
|||||+++|+|+++|++|+|.+++ +++||||+|+++++|++|||.++. ..++++.+++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999974 2456778899999999988877
Q ss_pred CCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc
Q 000481 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1467)
Q Consensus 705 l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1467)
|.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+. . .|+|+|+||||++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~-~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR-E--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH-H--cCCEEEEEeCchHHHHh
Confidence 899999876 577999999999999999999999999999999999999999876443 3 38999999999999999
Q ss_pred CCEEEEEeC
Q 000481 785 VDRILVLEG 793 (1467)
Q Consensus 785 ~d~i~~l~~ 793 (1467)
||+|++|+.
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999963
No 102
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-54 Score=497.20 Aligned_cols=239 Identities=38% Similarity=0.696 Sum_probs=230.3
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.|||+|+.+++.+++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+||||+|.+|++|+++|++|++..+++++|++++.+++.+++..+|++||+.++|+|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999887889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
|||||||++||+++++.+++.|++.+++||+|+||||++++..||||+||++|+++|+|+|++|++..+.|++++.+...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 239 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDR 239 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcch
Confidence 99999999999999999999999988899999999999999999999999999999999999999988999999987653
No 103
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.9e-53 Score=489.38 Aligned_cols=440 Identities=24% Similarity=0.406 Sum_probs=344.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 659 (1467)
..+++++++..|+ ...+++||||+|++||+.|++|+||+|||||+++|.|.|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 3689999999997 357999999999999999999999999999999999999999999999983
Q ss_pred -EEEEccCCcCC-CCCHHHHHhcCCCC------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 660 -IAYVSQTSWIQ-SGSIRDNILYGKPM------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 660 -i~yv~Q~~~l~-~~ti~eNi~~g~~~------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
||+|.|++-+. +.|+.|||..|.+- +. +++++..+..++.-|.+ ++..+||-|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 99999998876 56999999999752 22 34455555555544433 5667899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
|.|-+|||++|+++|||||||-|-|...+++|+.+.+...+|+|||+|||+++++.. ||++-||.+|+++..-+ ..
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~- 225 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PV- 225 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CC-
Confidence 999999999999999999999999999999998777777889999999999999876 99999999999864211 00
Q ss_pred hcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccH
Q 000481 807 LAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGW 886 (1467)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 886 (1467)
++ .+.+|-
T Consensus 226 ---------------------------------------------------~~-------------~t~~el-------- 233 (501)
T COG3845 226 ---------------------------------------------------AE-------------TTEEEL-------- 233 (501)
T ss_pred ---------------------------------------------------CC-------------CCHHHH--------
Confidence 00 000000
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKA 966 (1467)
Q Consensus 887 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 966 (1467)
+
T Consensus 234 ---------------------a---------------------------------------------------------- 234 (501)
T COG3845 234 ---------------------A---------------------------------------------------------- 234 (501)
T ss_pred ---------------------H----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000481 967 SKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV 1046 (1467)
Q Consensus 967 s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1046 (1467)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T COG3845 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE 1126 (1467)
Q Consensus 1047 ~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ 1126 (1467)
++
T Consensus 235 -----------------~l------------------------------------------------------------- 236 (501)
T COG3845 235 -----------------EL------------------------------------------------------------- 236 (501)
T ss_pred -----------------HH-------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCC
Q 000481 1127 ALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP 1206 (1467)
Q Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~ 1206 (1467)
++.+ .+ ..+.+ +
T Consensus 237 ---------------MvG~-~v-------------------------------------------~~~~~--------~- 248 (501)
T COG3845 237 ---------------MVGR-EV-------------------------------------------VLRVV--------K- 248 (501)
T ss_pred ---------------hcCC-cc-------------------------------------------ccccc--------c-
Confidence 0000 00 00000 0
Q ss_pred CCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeC-CCCC
Q 000481 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI-CSMG 1285 (1467)
Q Consensus 1207 ~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI-~~i~ 1285 (1467)
++.-|.+--++++|+++.-+.+ -+.+++|||++++||.+||.|-.|-|-|-|+.+|.|+..+.+|+|.++|.|+ ...+
T Consensus 249 ~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 249 PPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC
Confidence 0111223469999999976544 3589999999999999999999999999999999999999999999999998 6667
Q ss_pred HHHHh-hccEEeccCCc----ccccchHHhcC-------CCCC---CCHHHHHHHHHHcCCchHHhhC---CCCcccccc
Q 000481 1286 LKDLR-VKLSIIPQEPT----LFRGSVRTNLD-------PLGL---YSDDEIWKALEKCQLKTTISSL---PNKLDSSVS 1347 (1467)
Q Consensus 1286 l~~LR-~~i~iIpQdp~----LF~gTIR~NLd-------p~~~---~sd~ei~~aL~~~~l~~~i~~l---p~gLdt~v~ 1347 (1467)
....| ..+++||.|.. ..+-|+.+|+- ||.. .+-.++.+..++ .+++. +.+.++++
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~a- 401 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAPA- 401 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcch-
Confidence 66654 57999999984 45679999983 2221 122333333222 12221 23344444
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhcc-cCEEEEEeC
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSY 1425 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~-~DrIlVl~~ 1425 (1467)
.+||||+.|++-+||-+.++|++||..+||-+||..+.+.|++.|.+. -+|+.|+.|+-.|+.+.. ||||.||.+
T Consensus 402 ---~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~ 478 (501)
T COG3845 402 ---RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYE 478 (501)
T ss_pred ---hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeC
Confidence 579999999999999999999999999999999999888888887765 468999999999999976 999999999
Q ss_pred CEEEEecChhH
Q 000481 1426 GKLLEYDEPSK 1436 (1467)
Q Consensus 1426 G~ivE~g~p~~ 1436 (1467)
|+++....|++
T Consensus 479 Gri~~~~~~~~ 489 (501)
T COG3845 479 GRIVGIVPPEE 489 (501)
T ss_pred Cceeccccccc
Confidence 99998887775
No 104
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-50 Score=472.54 Aligned_cols=254 Identities=21% Similarity=0.367 Sum_probs=218.6
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcC------C---CCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEE
Q 000481 1179 NYIISVERIKQFMHIPPEPPAIVE------D---KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1467)
Q Consensus 1179 ~~~~sveRi~~~~~~~~e~~~~~~------~---~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIV 1249 (1467)
..+++++|+.+|...+.|.....+ . ...+..||..|.|+|+|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 345677777777766554322111 1 0113469999999999999999765567999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCC--CCCHHHHhhccEEeccCCcccccchHHhcC--C-CCCCCH
Q 000481 1250 GRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--P-LGLYSD 1319 (1467)
Q Consensus 1250 GrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~--~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd--p-~~~~sd 1319 (1467)
||||||||||+++|+|+++ |++|+|.|||+|++ ++++.++|++++||||+|.+|++|+++|++ | +..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 566788999999999999999999999997 3 333555
Q ss_pred HHH-----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000481 1320 DEI-----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394 (1467)
Q Consensus 1320 ~ei-----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~ 1394 (1467)
++. .++++.+++. +++++.++++|.+||||||||+|||||++++|+||||||||++||+++++.+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 4566777754 3466788999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1395 IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1395 i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++.++++|+|+||||++++.+ ||||+||++|+|+|.|+|+++.+
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999889999999999999998 99999999999999999999987
No 105
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=7.3e-46 Score=428.93 Aligned_cols=193 Identities=23% Similarity=0.336 Sum_probs=160.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|.|+||+|+|.++ +.++++++|-|.++++|++|||+|+|||||++++.+.+.|..|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 49999999999755 47999999999999999999999999999999999999999998864321 1233
Q ss_pred Eecc---CCcccccchHHhcCC-CC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1295 IIPQ---EPTLFRGSVRTNLDP-LG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1295 iIpQ---dp~LF~gTIR~NLdp-~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
..-| |-..++-|.-+++.| +. +-..+++...|.++||.......| + ++||+|||.||+.||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHHhc
Confidence 2333 344566676677643 33 355678889999999986544433 3 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
.|.||||||||++||.+|-....++|.+. ..+||+|+|+...|.. +++|++.++|.+...
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999864 4589999999999977 899999999998775
No 106
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-45 Score=381.76 Aligned_cols=212 Identities=29% Similarity=0.479 Sum_probs=190.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC-CCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS-MGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~-i~l~~LR~~i 1293 (1467)
-|+++|++.+|.. ..||||||++|++||.|.|+||||||||||+++|.++-+|++|+|.|||.++.. .++..+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4899999999963 359999999999999999999999999999999999999999999999987743 3788999999
Q ss_pred EEeccCCccccc-chHHhcC--CC--CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLD--PL--GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLd--p~--~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
|+|+|...||+- |+-+|+. |- ...+ ++.-.+.|+++||.+.....|. +|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999976 9999984 21 1122 2345567899999998888876 5799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||.-+|+|+++|||||+||+|.-..+.+++++.. .|.|.|+|||.+....+ +|||+.||+|+|+|.|+|+++..
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999999998765 47899999999999988 99999999999999999999997
No 107
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-45 Score=401.58 Aligned_cols=224 Identities=27% Similarity=0.454 Sum_probs=194.7
Q ss_pred EEEEEEEEEeCCC---CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC---HHHH
Q 000481 1216 IELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDL 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~---~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---l~~L 1289 (1467)
|+++||+..|... ...+|+||||+|++||..||+|+||||||||++++-|+-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 346999999999999999999999999999999999999999999999999888776 5567
Q ss_pred hhccEEeccCCcccc-cchHHhcC-CCC--CCCHHH----HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1290 RVKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~-gTIR~NLd-p~~--~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
|++||+|+|++.|++ -|+.+|+. |.. ..+.+| +.+.|+.+||.|....-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999998 69999995 432 244444 567889999888776655 47899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+|||||..+|+||+.|||||+||++|-+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999988887543 37899999999999988 9999999999999999999998
Q ss_pred c-c-CChhHHHHHH
Q 000481 1439 E-T-NSSFSKLVAE 1450 (1467)
Q Consensus 1439 ~-~-~~~f~~lv~~ 1450 (1467)
. + +..=++++.+
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 7 3 3444555543
No 108
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.4e-44 Score=413.86 Aligned_cols=238 Identities=48% Similarity=0.821 Sum_probs=222.0
Q ss_pred CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhh
Q 000481 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~ 1291 (1467)
..|.|+++|++++|+.....+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999654356999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875445567889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHH
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVA 1449 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~ 1449 (1467)
++|||||||++||+++.+.+.+.+++..+++|+|+++|+++.+..||||++|++|++++.|+++++.+ .++.|+.++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 99999999999999999999999998767899999999999999999999999999999999999988 5677877654
No 109
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=425.34 Aligned_cols=263 Identities=25% Similarity=0.370 Sum_probs=220.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEEEeCCC
Q 000481 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1467)
Q Consensus 528 ~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~ 607 (1467)
+++++..+|+++++|+.+..|+..+|..... .+|+.+|+..++.+...... ..+..+.|+++|++++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6789999999999999999999888765443 56899998766543211111 12344689999999999743
Q ss_pred CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------------eEEEEccCC
Q 000481 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1467)
Q Consensus 608 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------------~i~yv~Q~~ 667 (1467)
..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3579999999999999999999999999999999999996 5799987643 599999999
Q ss_pred cCCCCCHHHHHhcCCC---CC-HH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 668 WIQSGSIRDNILYGKP---MD-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 668 ~l~~~ti~eNi~~g~~---~~-~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
|++++|++|||.|+.. .+ ++ .+.++++.|++.+++ ++.++++|.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998743 22 22 266778888876554 367889999999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|+||||||++||+++.+++ .+++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999986 4566666678999999999999987 999999999999999999998754
No 110
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=8.3e-44 Score=403.22 Aligned_cols=234 Identities=32% Similarity=0.553 Sum_probs=216.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544569999999999999999999999999999999999999999999999999998888889999999
Q ss_pred eccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|+.|+++|+.... ..+.+++.++++..++.+.+..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997432 24566788888999999999999999999888889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
||||||++||..+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|++++++++.+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 999999999999999999999987778999999999999988999999999999999999999988888877653
No 111
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-44 Score=374.00 Aligned_cols=202 Identities=26% Similarity=0.437 Sum_probs=179.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.|+++|++.+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 4699999999999999999999999999999999999999999999998 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
+|+|+|+..||. .|+.|||..+. ... +++..+.++..+|.+..+.+| ..|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 789999999875 59999999873 222 244556777788877777666 4899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||||..+|+++|+|||||||||+...++.+-......+|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999887666667789999999999999998 7999999999999999999988654
No 112
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-43 Score=395.94 Aligned_cols=221 Identities=57% Similarity=1.020 Sum_probs=209.6
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975445699999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+++||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++...+.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecCh
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p 1434 (1467)
|||||||++||+.+.+.+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
No 113
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-43 Score=364.89 Aligned_cols=217 Identities=25% Similarity=0.461 Sum_probs=194.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCc-----ceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~-----G~I~IDG~dI~~--i~l 1286 (1467)
..++++|+++.|. ...+|+|||++|++++..|++|||||||||++++|-|+.+... |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3699999999996 3459999999999999999999999999999999999999875 999999999986 578
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
-.||+++|+|+|.|.-|+.||.||+... +.. =|+-+.++|+++.|+|.|.+ .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 9999999999999999999999999521 111 24557889999999998864 23 3456679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
||||||||.-+|+||+||||||+||+.+-..|.+.|.+..++-||++|||.+.-... +|+...+..|+++|+|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999998889999999999998765 8999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 237 ~ 237 (253)
T COG1117 237 T 237 (253)
T ss_pred c
Confidence 6
No 114
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-42 Score=395.74 Aligned_cols=193 Identities=20% Similarity=0.316 Sum_probs=165.9
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
...+++.+|+|.|.|+.++.+++++++++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999999887899999999999999999999999999999999999999999998887 889
Q ss_pred cEEeccCCcccccchHHhcCC-------CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1293 LSIIPQEPTLFRGSVRTNLDP-------LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1293 i~iIpQdp~LF~gTIR~NLdp-------~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|++-.|.-+=| ..-|..+ +.-.+++|+.+.|...|+..-+...+ -..||||||-|+++|-
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAA 495 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHH
Confidence 99999976643 2222211 11138999999999998876554332 1469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
....+|.+|||||||+.||.++-..+-++|+. |+| -||+|+|+.+.|.. |+.++|.++|+|.-+
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 99999999999999999999999999999986 554 59999999999976 999999999999763
No 115
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-42 Score=390.50 Aligned_cols=232 Identities=31% Similarity=0.535 Sum_probs=213.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+....++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred eccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|++|+++|+.... ..+.+++.+.++..++.+++..+|.|+++.......+||+|||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997432 34567778888999999999999999999988889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~l 1447 (1467)
||||||++||..+...+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|+++++.+..+.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 9999999999999999999999887889999999999999889999999999999999999998877766543
No 116
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-43 Score=370.85 Aligned_cols=216 Identities=29% Similarity=0.469 Sum_probs=193.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+|+|||++|. ...+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999996 3459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccc-chHHhcC--CC-CCCC----HHHHHHHHHHcCCc--hHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1296 IPQEPTLFRG-SVRTNLD--PL-GLYS----DDEIWKALEKCQLK--TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLd--p~-~~~s----d~ei~~aL~~~~l~--~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|-|.--||+- ||.+|+. |- ..++ ++.+.+.|+.++|. ++....|. .|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHHH
Confidence 9999999976 9999994 31 1234 44567788999996 46677665 57999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||..+|+||+||||.++||+-|.+.+|+-+.+.- -++|+|+|||+++... -+|||.||++|+|+.+|+|+++++ +.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999887543 3799999999998865 499999999999999999999998 54
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 444
No 117
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.8e-42 Score=380.50 Aligned_cols=207 Identities=56% Similarity=0.967 Sum_probs=189.2
Q ss_pred CCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH
Q 000481 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1210 wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L 1289 (1467)
||..+.++++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
|++++|+||+|.+|++|+++|+..+..++++++.++++ +......||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999997655556666666554 234466899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecCh
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p 1434 (1467)
+|+||||||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987778999999999999988999999999999999875
No 118
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-42 Score=387.29 Aligned_cols=233 Identities=32% Similarity=0.570 Sum_probs=214.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999633 359999999999999999999999999999999999999999999999999999988899999999
Q ss_pred eccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999632 235677888999999999999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++.++.+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHh
Confidence 999999999999999999999887668899999999999999999999999999999999999887777766543
No 119
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.9e-42 Score=392.11 Aligned_cols=222 Identities=27% Similarity=0.369 Sum_probs=202.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.|+++|++++|+++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999643 3569999999999999999999999999999999999998 799999987 48
Q ss_pred EEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
+||||+|++|++|++||+....+.+++++.++++.+++...+..+|.+++|.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999974445677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
+||||||++||+++.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++++.++.|++++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~-l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKT-LKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHHH-HHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999887654 44445689999999999999889999999999999999999999987777777654
No 120
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-42 Score=384.90 Aligned_cols=227 Identities=35% Similarity=0.601 Sum_probs=209.8
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|.|+++|++++|.. ..++++|+||+|++||.+||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46999999999963 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
+|+||+|.+|++|+++|+..+. ...++++.++++.+++.+++..+|.|+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999996432 345678888999999999999999999999988899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
+|||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++++.|++++++++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999999999876789999999999999889999999999999999998887643
No 121
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.7e-41 Score=384.61 Aligned_cols=233 Identities=34% Similarity=0.620 Sum_probs=211.8
Q ss_pred EEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1216 IELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
|+++|++++|... ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999642 246999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1295 IIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
++||+|.+|+.|+++|+... .....+++.+.++..++.+++..+|.|+++.......+||+|||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999643 23456678888999999999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+++++.+..+..+..+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999998767899999999999998999999999999999999999987666555543
No 122
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-41 Score=375.13 Aligned_cols=213 Identities=30% Similarity=0.490 Sum_probs=188.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.++++|++++|. ..++|+|+||+|++||.++|+||||||||||+++|.|+..|.+|+|.+||.||.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCc-ccccchHHhcC----C----CCCCC--HH-HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPT-LFRGSVRTNLD----P----LGLYS--DD-EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~-LF~gTIR~NLd----p----~~~~s--d~-ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
||||++. -|.-|++|-+. | +...+ |+ .+.+||+.+++.++..+. + ..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHHH
Confidence 9999975 45558887762 3 22223 33 477889999998886542 2 359999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhh-cccCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTV-IDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti-~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||.++|+||+|||||++||....-.+.+.+++.. ++.|+|+|.|+++.. +.||++++|++|+++..|+|+|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999765 479999999999876 5699999999999999999999987
Q ss_pred c
Q 000481 1440 T 1440 (1467)
Q Consensus 1440 ~ 1440 (1467)
+
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
No 123
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.5e-41 Score=376.53 Aligned_cols=219 Identities=34% Similarity=0.568 Sum_probs=201.2
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|+|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46999999999964334699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
+++||+|.+|..|+++|+... ...+++++.++++..++.+.+...|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999643 2245667888999999999999999999999998889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEec
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g 1432 (1467)
+|||||||++||.++.+.+.+.|++..+++|+|+++|+++.+.-||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988779999999999998865
No 124
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.6e-41 Score=397.45 Aligned_cols=213 Identities=27% Similarity=0.444 Sum_probs=188.2
Q ss_pred EEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hh
Q 000481 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR 1290 (1467)
|+++|++++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred hccEEeccCCcccc-cchHHhcC-CC--CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLD-PL--GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLd-p~--~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++++.+++.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999996 69999995 21 1123 235678899999877655443 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+.+|+||+||||||+||++|.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998643 7899999999999976 99999999999999999999987
No 125
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=372.50 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=176.3
Q ss_pred EEEEeEEEEeCCC--CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
|+++++++.|... ....+|+|+||+|++||+.+|+|.||+|||||++++.++-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999753 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
+||+++|++.+++ .||.|||.|..+ ..+ +|+.+.++..+|.+..+ ..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-----------~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-----------RYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------cCchhcCcchhhHH
Confidence 4999999999887 699999999754 222 34445555566654444 34569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
+|||||..+|+|||.|||||||||+|.+.|.+.+.+.. .-|-|+++|||.++.++. |||+.||++|+++|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999987555432 348999999999999997 9999999999999999999988
Q ss_pred hcC
Q 000481 807 LAG 809 (1467)
Q Consensus 807 ~~~ 809 (1467)
..+
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 654
No 126
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-41 Score=366.18 Aligned_cols=190 Identities=33% Similarity=0.470 Sum_probs=167.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEcc
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1467)
.+++++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5789999999974 5799999999999999999999999999999999999999999999987 5899999
Q ss_pred CCcCCC-CCHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 666 TSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
++-++. -||+|||.||.+. .+++.++.++.++|...-+.+| ..||||||||||||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 988765 5999999998653 1346777888888877666655 48999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeC--CeEe
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG--GQIT 797 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~ 797 (1467)
|+++||||||+|||+.|+.++-+.+.+.+. .++|+++|||++++.-. +|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999877776654 57999999999998655 899999998 4453
No 127
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=394.29 Aligned_cols=218 Identities=24% Similarity=0.368 Sum_probs=184.1
Q ss_pred cceEEEEEEEEEeCCC---CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC-----
Q 000481 1213 KGRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----- 1284 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~---~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----- 1284 (1467)
...|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3469999999999643 23599999999999999999999999999999999999999999999999998753
Q ss_pred -----------CHHHHhhccEEeccCC--cccccchHHhcCCCC---CCCHHH----HHHHHHHcCCchHHhhCCCCccc
Q 000481 1285 -----------GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPLG---LYSDDE----IWKALEKCQLKTTISSLPNKLDS 1344 (1467)
Q Consensus 1285 -----------~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt 1344 (1467)
....+|++++++||+| .+|++|+++|+.... ..++++ +.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3567899999999998 689999999994211 123333 334455554431 2
Q ss_pred ccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc-ccCEEEE
Q 000481 1345 SVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI-DSDMVMV 1422 (1467)
Q Consensus 1345 ~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlV 1422 (1467)
.....+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||+|
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 2345567899999999999999999999999999999999999999999998653 5889999999999885 5999999
Q ss_pred EeCCEEEEecChhHHhcc
Q 000481 1423 LSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1423 l~~G~ivE~g~p~~Ll~~ 1440 (1467)
|++|++++.|+|+++.+.
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999988753
No 128
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-41 Score=369.53 Aligned_cols=209 Identities=25% Similarity=0.416 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|..+ + ||+||||+|++||.+||+||||||||||+++++|+..|++|+|.++|.++++... |.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999755 4 9999999999999999999999999999999999999999999999998876433 57999
Q ss_pred EeccCC---cccccchHHhcCCC--------CC---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1295 IIPQEP---TLFRGSVRTNLDPL--------GL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1295 iIpQdp---~LF~gTIR~NLdp~--------~~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
||||.. .-|+-||+|-+... +. .+.+++.+||+++++.++.. -+++ .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHHH
Confidence 999955 35888999987432 11 12478999999999998753 3454 499999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS-NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+.|||||+++|++|+|||||++||+.+++.|.+.|++..+ ||||++|+|+++.+++ +|+|+.| ++++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999987664 8999999999999976 9999988 56788999999988
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 73
No 129
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.3e-41 Score=377.78 Aligned_cols=211 Identities=30% Similarity=0.518 Sum_probs=185.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCcceEEECCeeCCCCC--HHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV-----EPAGGSILIDGVDICSMG--LKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~-----~~~~G~I~IDG~dI~~i~--l~~ 1288 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998877 667
Q ss_pred HhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 88999999999999988999999531 111 13467788898888765544321 35799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987656899999999999875 999999999999999998764
No 130
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-41 Score=357.78 Aligned_cols=223 Identities=26% Similarity=0.446 Sum_probs=186.5
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC-CHHHHhh
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM-GLKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i-~l~~LR~ 1291 (1467)
.++++|+++.|+.+. .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+.... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999996443 2499999999999999999999999999999999999999999999999776653 2346788
Q ss_pred ccEEeccCCcc-cc--cchHHhcC-CCCC----CCHHHHHHHHHHcCCchHH-hhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1292 KLSIIPQEPTL-FR--GSVRTNLD-PLGL----YSDDEIWKALEKCQLKTTI-SSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1292 ~i~iIpQdp~L-F~--gTIR~NLd-p~~~----~sd~ei~~aL~~~~l~~~i-~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
.+.+|+|||.- ++ -||++-|. |... -..++++++|+.+|+.+.. ...|. .||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHHHH
Confidence 99999999962 22 25655552 3321 2345699999999997644 45554 48999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--cEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN--CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~--~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||.-+|++||+|||||+||.-..+.|.+.+.+..++ -|.|+|+|+++.+.. ||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999998876554 499999999999987 99999999999999999999987
Q ss_pred c-CChhHHHH
Q 000481 1440 T-NSSFSKLV 1448 (1467)
Q Consensus 1440 ~-~~~f~~lv 1448 (1467)
. .-.|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 3 54554433
No 131
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=358.87 Aligned_cols=202 Identities=30% Similarity=0.401 Sum_probs=174.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
|+|+|+|+.|. ++.+++|+||+|++||+++++|||||||||+|++|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999997 35799999999999999999999999999999999999999999999988 599
Q ss_pred EEccCCcCC-CCCHHHHHhcCCC---CCHH----HHHHHHHHhcchH--HHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 662 YVSQTSWIQ-SGSIRDNILYGKP---MDKA----RYDKAIKACALDK--DINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 662 yv~Q~~~l~-~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~--~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
||-|+.-|| +.||.|||.+-.. ++++ +.++.++..+|++ ..+. ....|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----------yP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR-----------YPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc-----------CchhcCcchhhHHHHH
Confidence 999998876 5699999998532 4444 4556677777764 3333 4568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
|||..+|+|+|+||||+||||-+++.+-+....... -|+|+|+|||++++. +-+|||.+|++|+|++.|++++++.++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999998665554332 489999999999885 459999999999999999999999865
Q ss_pred c
Q 000481 810 T 810 (1467)
Q Consensus 810 ~ 810 (1467)
.
T Consensus 228 a 228 (309)
T COG1125 228 A 228 (309)
T ss_pred c
Confidence 3
No 132
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=365.04 Aligned_cols=201 Identities=32% Similarity=0.527 Sum_probs=175.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~y 662 (1467)
..|+++|++|+|+.+ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999743 599999999999999999999999999999999999999999999865 4999
Q ss_pred EccC---CcCCCCCHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 663 VSQT---SWIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 663 v~Q~---~~l~~~ti~eNi~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|||. .|-|..||+|-+..|... |.++++++++..++.+..+ .+..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 9996 477899999999998421 3477888999988874333 45568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
-|||||.++||+|+|||||+++|+.++..+++.+.....+|+||++|||+++.+.. +|+|+.| |+++...|++++...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999987655555569999999999998765 9999999 567889999999875
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
No 133
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=369.52 Aligned_cols=214 Identities=31% Similarity=0.492 Sum_probs=193.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC-CCCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~-~i~l~~LR~~i 1293 (1467)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.|++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999877 67999999999999999999999999999999999999999999999999999 48899999999
Q ss_pred EEeccCC--cccccchHHhcCCC--C-CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEP--TLFRGSVRTNLDPL--G-LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp--~LF~gTIR~NLdp~--~-~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
|+|.|+| .+|..||.+.+... + ..+.+ .+.++|+.+++.++....| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 79999999998521 1 23444 4678999999988754444 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
.+|..+|+|||||||||+||+...+.+.+.+++..+ +.|+|+|+|+++.+.+ |||++||++|+++.+|+|+++.+.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998654 4799999999999998 999999999999999999999873
No 134
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=375.64 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=185.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR~~ 1292 (1467)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 359999999999999999999999999999999999999999999999999988764 567899
Q ss_pred cEEeccCCccccc-chHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
++++||+|.+|.+ |+++|+... ...+ ++++.++++.+++.++....| .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 999998521 1123 234667788888765543322 4699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||++++|+||||||||++||..+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999987643 7899999999999876 999999999999999999998864
Q ss_pred CC
Q 000481 1441 NS 1442 (1467)
Q Consensus 1441 ~~ 1442 (1467)
..
T Consensus 228 ~~ 229 (235)
T cd03261 228 DD 229 (235)
T ss_pred CC
Confidence 43
No 135
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-40 Score=351.83 Aligned_cols=216 Identities=28% Similarity=0.500 Sum_probs=190.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHh
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR 1290 (1467)
-.|++++|+++|. ...||+||||+|++||..||+|+||||||||++++.|+..|++|+|.|||.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 3699999999994 34699999999999999999999999999999999999999999999999999998865 469
Q ss_pred hccEEeccCCccccc-chHHhcC-CCCCC---CHHHHH----HHHHHcCCchH-HhhCCCCcccccccCCCCCChhHHHH
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLD-PLGLY---SDDEIW----KALEKCQLKTT-ISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLd-p~~~~---sd~ei~----~aL~~~~l~~~-i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+++|+++|.--||+. ||+||+. |..+| +++++. .-|+.+||... ....|. .||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-----------ELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS-----------ELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch-----------hhcchHHHH
Confidence 999999999999987 9999995 55544 445444 45788888877 344453 589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
++||||+.-+|+||++|||||+||+-+-..+.+.|++.. -+.|+++|||+++++.. ||||+++.+|+|+-.|+|++|
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999888888887643 37899999999999987 799999999999999999999
Q ss_pred hccCC
Q 000481 1438 METNS 1442 (1467)
Q Consensus 1438 l~~~~ 1442 (1467)
.+.+.
T Consensus 234 ~~sd~ 238 (263)
T COG1127 234 LASDD 238 (263)
T ss_pred HhCCC
Confidence 99443
No 136
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-39 Score=410.90 Aligned_cols=214 Identities=23% Similarity=0.304 Sum_probs=173.9
Q ss_pred cceEEEEEEEEE--------eCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--CCcceEEECCeeCC
Q 000481 1213 KGRIELRQLKIR--------YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--PAGGSILIDGVDIC 1282 (1467)
Q Consensus 1213 ~g~I~f~nvs~~--------Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~~~G~I~IDG~dI~ 1282 (1467)
.+.++++||..- +..+....|+|||=-++||--.|++|.||||||||++.|.+-.. ..+|+|+|||.+..
T Consensus 779 ~~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 779 PLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred cccccccceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 345666666321 12244568999999999999999999999999999999997653 24899999999987
Q ss_pred CCCHHHHhhccEEeccCCcccc-cchHHhcCC------CCCCCHHH----HHHHHHHcCCchHHhhCCCCcccccccCCC
Q 000481 1283 SMGLKDLRVKLSIIPQEPTLFR-GSVRTNLDP------LGLYSDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGE 1351 (1467)
Q Consensus 1283 ~i~l~~LR~~i~iIpQdp~LF~-gTIR~NLdp------~~~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~ 1351 (1467)
+ +..++++|||.|++...+ -||||-|.. -.+.+++| +.++.+..+|.+.- |..||..|.
T Consensus 859 q---~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~ 928 (1391)
T KOG0065|consen 859 Q---ETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGS 928 (1391)
T ss_pred h---hhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCC
Confidence 5 778999999999886554 499999831 12345444 55667777766543 456888889
Q ss_pred CCChhHHHHHHHHHHhccCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhh--cccCEEEEEeC-C
Q 000481 1352 NWSAGQRQLFCLGRVLLKRN-RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTV--IDSDMVMVLSY-G 1426 (1467)
Q Consensus 1352 nLS~GQrQrl~LARAlLr~~-~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti--~~~DrIlVl~~-G 1426 (1467)
.||..||.|+.||--|+.|| .||.||||||+||+++...|.+++|+.. .|+||++.-|.++.. ...|+++.|++ |
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGG 1008 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGG 1008 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCC
Confidence 99999999999999999999 8999999999999999999999999754 699999999999854 56999999976 7
Q ss_pred EEEEecChhH
Q 000481 1427 KLLEYDEPSK 1436 (1467)
Q Consensus 1427 ~ivE~g~p~~ 1436 (1467)
+.+-+|++.+
T Consensus 1009 qtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1009 QTVYFGPLGE 1018 (1391)
T ss_pred eEEEecCccc
Confidence 9999988644
No 137
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=375.41 Aligned_cols=216 Identities=21% Similarity=0.402 Sum_probs=191.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~LR~ 1291 (1467)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999953 469999999999999999999999999999999999985 68999999999999888888999
Q ss_pred ccEEeccCCcccccchHHhcCCCC---C------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1292 KLSIIPQEPTLFRGSVRTNLDPLG---L------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~gTIR~NLdp~~---~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+++..+ ....+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999995321 1 1234577889999987655432 23455789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987678999999999998865 99999999999999999999986
No 138
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=382.76 Aligned_cols=215 Identities=25% Similarity=0.410 Sum_probs=190.5
Q ss_pred eEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
-|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 34599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEeccCCc--ccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~--LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||+|. ++..|+++|+.... ..+ ++.+.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 56779999995211 123 345788999999877655443 47999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||++++|+||||||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999987643 7999999999999988999999999999999999998764
No 139
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=372.78 Aligned_cols=212 Identities=31% Similarity=0.485 Sum_probs=188.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCCcccccchHHhcCCCC---CCCHHHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccC
Q 000481 1295 IIPQEPTLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~~---~~sd~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~ 1370 (1467)
++||+|.+|+.|+++|+.... ...++++.+.++..++. +... ....+||+|||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999996321 12345677788888774 2222 23457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1371 NRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1371 ~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 99999999999999999999999998753 37899999999999876 99999999999999999999987
No 140
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.8e-40 Score=371.66 Aligned_cols=217 Identities=31% Similarity=0.534 Sum_probs=197.7
Q ss_pred CcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHh
Q 000481 1212 FKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999643 24699999999999999999999999999999999999999999999999999888888889
Q ss_pred hccEEeccCCcccccchHHhcCC-CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~gTIR~NLdp-~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++++++||+|.+|++|+++|++. ......+++++..+..++.+++..+|.|+++.+.....+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999973 22334556677777788899999999899988888899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777999999999999988999999999975
No 141
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2e-40 Score=366.34 Aligned_cols=201 Identities=26% Similarity=0.415 Sum_probs=177.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++|+|+ ++++|+|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 35799999999999999999999999999999999999999999999998 59
Q ss_pred EEEccCCcC-CCCCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 661 ~yv~Q~~~l-~~~ti~eNi~~g~~-----------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|||||++.. +..||+|-+.+|+. .|++.+.++++.+++.+..+ +...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 56799999999952 13345677788888876554 34568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh-hcCCEEEEEeCCeEeEecChHHHH
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
.|||||+++|+|++||||||+||....-++++.+.+.. .+|+|+|+|+|+++.. ..||++++|++|+++..|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998766655 4689999999999886 569999999999999999999987
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
No 142
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.8e-40 Score=338.65 Aligned_cols=208 Identities=23% Similarity=0.394 Sum_probs=186.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR~~ 1292 (1467)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+|||||||++++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999866 77999999999999999999999999999999999999999999999999999988665 8999
Q ss_pred cEEeccCCcccc-cchHHhcC-CCC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLD-PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLd-p~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
||+|.||--|.. -|+.||+. |.. ..+ .+.+.++|+.+||.+-...+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 999999998775 49999985 332 123 3457789999999999999986 4799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhccc-CEEEEEeCCEEEEecChh
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDS-DMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~-DrIlVl~~G~ivE~g~p~ 1435 (1467)
||+..+|++||-||||.|||+++...|.+.+.+.- .|.||++.||+.+.+.++ -|++.+++|+++..+.+.
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~g 222 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccccC
Confidence 99999999999999999999999999999987643 589999999999999885 689999999999887653
No 143
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-40 Score=350.92 Aligned_cols=212 Identities=29% Similarity=0.465 Sum_probs=189.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC---HHHHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---l~~LR~ 1291 (1467)
.|+++||+.+|+ +...+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++.... ++++|.
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999996 4557999999999999999999999999999999999999999999999999999988 777899
Q ss_pred ccEEeccCCccccc-chHHhcC------------CCCCCCHH---HHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1292 KLSIIPQEPTLFRG-SVRTNLD------------PLGLYSDD---EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~g-TIR~NLd------------p~~~~sd~---ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
+||+|+|.|.|-.. |+-+|+. .|+.++.+ +..+||+++|+.+..-. +.++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999998865 8899972 13344444 46788999999887543 3457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||+||++|||||.++|+|++-|||||+||+++.+.|.+.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998754 57899999999999976 9999999999999999
Q ss_pred ChhHHh
Q 000481 1433 EPSKLM 1438 (1467)
Q Consensus 1433 ~p~~Ll 1438 (1467)
++.||-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
No 144
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.7e-40 Score=354.76 Aligned_cols=204 Identities=29% Similarity=0.422 Sum_probs=177.0
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH----H
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~----L 1289 (1467)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++-.|++|.|.++|.|++.++-++ .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996443 35999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hhccEEeccCCccccc-chHHhcC-C--CCCCC----HHHHHHHHHHcCCchHHh-hCCCCcccccccCCCCCChhHHHH
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLD-P--LGLYS----DDEIWKALEKCQLKTTIS-SLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLd-p--~~~~s----d~ei~~aL~~~~l~~~i~-~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|++||+|+|+..|++. |++||+. | +.... ++...+.++.+++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 6779999999999876 9999985 2 22222 445667777888876655 434 3589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEE
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE 1430 (1467)
+||||||+.+|+|++.||||++||.+|.+.|.+.+++.- .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999874 3789999999999999999999999999543
No 145
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-40 Score=379.24 Aligned_cols=216 Identities=25% Similarity=0.426 Sum_probs=191.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999644456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EeccCC--cccccchHHhcCCCC---CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp--~LF~gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|+||+| .+++.|+++||.... ..++ +++.++++.+++.++....|. .||+|||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc-----------cCCHHHHHHHHHHH
Confidence 999998 466789999995311 1232 447788888898877665543 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.+..
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999997653 78999999999999889999999999999999999987643
No 146
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.7e-40 Score=367.68 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=182.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++||+++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++... ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643246999999999999999999999999999999999999999999999999997643 667889999
Q ss_pred eccCCccc-ccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLF-RGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF-~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.. ++.+ .+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHHH
Confidence 99999998 579999985211 112 24567788888875543 2222 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987777999999999999976 999999999999999999875
No 147
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-40 Score=388.33 Aligned_cols=213 Identities=25% Similarity=0.409 Sum_probs=186.2
Q ss_pred EEEEEEEEEeCC--CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hh
Q 000481 1216 IELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~--~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR 1290 (1467)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hccEEeccCCcccc-cchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++|+|+||+|.+|. .|+++|+... ...++ +++.++++..++.+..... ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 6999999521 11222 3567788888876554332 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998643 7899999999999876 99999999999999999999987
No 148
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.8e-39 Score=370.01 Aligned_cols=219 Identities=41% Similarity=0.710 Sum_probs=197.2
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcC
Q 000481 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1467)
Q Consensus 590 ~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l 669 (1467)
.....|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.|+|++|++++
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc
Confidence 345679999999962 369999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 000481 670 QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1467)
Q Consensus 670 ~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~sa 749 (1467)
++.|++||+.++....+.++.+.++++++.+.+..++.+.++.+++++.+||||||||++||||++++|+++||||||++
T Consensus 110 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g 189 (282)
T cd03291 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (282)
T ss_pred cccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999865555567778888899888999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHH
Q 000481 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1467)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 813 (1467)
||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++......+.
T Consensus 190 LD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 190 LDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 9999998887766555456899999999999998899999999999999999999876544343
No 149
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.4e-39 Score=371.19 Aligned_cols=219 Identities=25% Similarity=0.377 Sum_probs=194.9
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
.+.|+++|++++ + .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 457999999995 2 3599999999999999999999999999999999999999999999998 4
Q ss_pred cEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1293 i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
++|+||+|.+|++|+++|+.......+.++.++++.+++.+.+..+|.++++.+++.+.+||+|||||++||||++++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997432344556778888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1373 ILVLDEANASIDSATDAILQRI-IRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~-i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
||||||||++||+++...+.+. +++..+++|||+|+|+++.+..||+|++|++|+++++|+++++.+....|.+-+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999999998877664 455556899999999999998899999999999999999999987555554433
No 150
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.9e-40 Score=361.53 Aligned_cols=199 Identities=27% Similarity=0.454 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
|+++||+++|++.. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999996542 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1293 i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
|+|+||+|.+|++|+++|+......++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997654556778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1373 ILVLDEANASIDSATDAILQR-IIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~-~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
+++|||||++||.++.+.+.+ .+++.. +++|||+++|+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999998776655 666543 3689999999999998999999999985
No 151
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-40 Score=375.94 Aligned_cols=215 Identities=26% Similarity=0.437 Sum_probs=192.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++.+|.... +|+|+|++|+.||.++++||||||||||+++|.|+.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 599999999996433 999999999999999999999999999999999999999999999999999999886 7899
Q ss_pred EeccCCccccc-chHHhcC-CCC--C----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLD-PLG--L----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLd-p~~--~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+|+|+..||+- ||++||. |.. . --++++.++++..++.+.++..|. .||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999976 9999995 221 1 125678899999999999888876 479999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++++||||.|+||+.....+...|++..+ +.|+|.|||+....+. +|||.||++|+|.+.|+|.|+.+ +.+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999998888887776433 6899999999988876 99999999999999999999997 555
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 54
No 152
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-39 Score=345.99 Aligned_cols=205 Identities=27% Similarity=0.435 Sum_probs=178.7
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
...|++++++++|.. +.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 457999999999963 5799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEccCCcCCCC-CHHHHHhcCC----CCCHHHHHH----HHHHhcchHH-HhcCCCCCCccccCCCCccChHHH
Q 000481 659 ---SIAYVSQTSWIQSG-SIRDNILYGK----PMDKARYDK----AIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~~-ti~eNi~~g~----~~~~~~~~~----~~~~~~l~~~-~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
++|+++|+.-||+. ||+||+.|.. ...++.+++ -+++++|..+ .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 49999999999976 9999999953 244544443 4677888877 55555 58999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
.|+|||||+..||+|+++|||||+|||.+...+ ++++..+. -|-|+|+|||+++.+.. ||+|+++.||+|...|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999998765 56665543 37899999999999876 799999999999999999
Q ss_pred HHHHhcCch
Q 000481 803 QELLLAGTA 811 (1467)
Q Consensus 803 ~~l~~~~~~ 811 (1467)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999887543
No 153
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=372.72 Aligned_cols=219 Identities=27% Similarity=0.451 Sum_probs=190.4
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CC
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~ 1285 (1467)
.+.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999963 359999999999999999999999999999999999986 589999999999863 45
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||+|.+|..|+++|+... +..+ +++++++++.+++.+.+.. .......+||+||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999631 1122 3457788888887554322 2334556899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|+||||||||++||.++.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred Hhcc
Q 000481 1437 LMET 1440 (1467)
Q Consensus 1437 Ll~~ 1440 (1467)
+.+.
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 9873
No 154
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=343.35 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=180.0
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCC-----cEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-----G~i~~~g--------- 658 (1467)
..++++|+++.|.. +.+|+|||++|++++++|++|||||||||||+++.+..+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999973 569999999999999999999999999999999999888765 8998877
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
+||+|+|.|.-|..||+|||.||... . ++.+++.++.++|.+.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999999531 1 3457778888888765542 23367788999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||+.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+..++.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999887 6677777788899999999998877 69999999999999999998
Q ss_pred HHhcC
Q 000481 805 LLLAG 809 (1467)
Q Consensus 805 l~~~~ 809 (1467)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87543
No 155
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=386.10 Aligned_cols=216 Identities=24% Similarity=0.386 Sum_probs=189.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999423 4599999999999999999999999999999999999999999999999999988765 47899
Q ss_pred EeccCCcccc-cchHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+|||++.+|. .|+++|+.. .. ..+ ++++.++++.+++.++....|. +||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh-----------hCCHHHHHHHHHHHH
Confidence 9999999996 499999952 11 123 2457788999999877666553 689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+ +..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987643 7899999999998865 99999999999999999999987 444
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
No 156
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.5e-40 Score=374.68 Aligned_cols=202 Identities=32% Similarity=0.414 Sum_probs=178.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.|+++|++.+|.+. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999642 289999999999999999999999999999999999999999999988 4999
Q ss_pred EccCCcCC-CCCHHHHHhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~~~-------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|+.-|+ ..||+|||.||.... +++++++++..++++.++.. ...||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~-----------P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK-----------PLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcC-----------cccCChhhHHHHHHHHHH
Confidence 99998876 569999999996532 46788889999998888764 458999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
.++|+++|||||+|+||++....+..++.+... -+.|+|+|||+..++. -+|||+||++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999887666554332 3789999999987765 59999999999999999999998764
No 157
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=376.38 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 45999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCC--cccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.+.....|. .||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh-----------hCCHHHHHHHHHHH
Confidence 999998 688899999996211 122 3467888999998776555443 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998764 47899999999999865 9999999999999999997653
No 158
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=378.27 Aligned_cols=213 Identities=29% Similarity=0.459 Sum_probs=184.8
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC--HHHHh
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~--l~~LR 1290 (1467)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999996432 36999999999999999999999999999999999999999999999999998754 46789
Q ss_pred hccEEeccCC--cccccchHHhcCCCC---CCCH----HHHHHHHHHcCCc--hHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1291 VKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLK--TTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1291 ~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~--~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
++++|+||+| .+|+.|+++|+.... ..++ +.+.++++.+++. +. .......|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-----------KDKSPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-----------ccCCcccCCHHHHH
Confidence 9999999998 578899999995211 1233 3467788888875 22 12234579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999864 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+++
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 875
No 159
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=371.54 Aligned_cols=216 Identities=25% Similarity=0.461 Sum_probs=188.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999953 359999999999999999999999999999999999975 589999999999975 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCC----CCC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP----LGL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp----~~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+.. .+. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 78899999999999999999999952 111 123567788888888665432 223445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 237 ~ 237 (253)
T PRK14242 237 T 237 (253)
T ss_pred c
Confidence 6
No 160
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=377.93 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=183.2
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHH
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~ 1287 (1467)
.|+++|++++|+++. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3699999999999999999999999999999999999999999999999999764 346
Q ss_pred HHhhccEEeccCC--cccccchHHhcCCC--C-CCCH----HHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSD----DEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~--~-~~sd----~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
.+|++|+|+||+| .+|..|+++|+... . ..+. +.+.++++.+++. +. ......+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV-----------MSQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh-----------hhCCcccCCHHH
Confidence 7899999999998 58889999999521 1 1233 3345566666653 22 123456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p 1434 (1467)
|||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+|
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998753 47999999999999864 899999999999999999
Q ss_pred hHHhcc
Q 000481 1435 SKLMET 1440 (1467)
Q Consensus 1435 ~~Ll~~ 1440 (1467)
++++++
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 998764
No 161
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=385.25 Aligned_cols=216 Identities=27% Similarity=0.431 Sum_probs=189.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999953 4599999999999999999999999999999999999999999999999999987654 6789
Q ss_pred EEeccCCccccc-chHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++|||++.+|.. |+++|+.. .. ..+ ++++.++++..++.++....| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999952 11 122 346778899999877654443 468999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||+++|+||+||||||+||..+.+.+.+.|++..+ +.|+|+|||+.+.+.. ||||+||++|++++.|+|+++.+ +.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999987654 7899999999999866 99999999999999999999987 44
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 443
No 162
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.7e-39 Score=364.43 Aligned_cols=220 Identities=30% Similarity=0.466 Sum_probs=195.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
|+++|++++|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999643 35799999999999999999999999999999999999999999999877 389
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|.++..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998654 345556666777788888899998988888899999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 816 (1467)
+||||||++||+.+.+.+.+.+... .+|+|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 9999999999999999987655443 46899999999999998899999999999999999999987766665543
No 163
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-39 Score=368.55 Aligned_cols=211 Identities=26% Similarity=0.397 Sum_probs=182.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999953 459999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EeccCCcccc-cchHHhcCCCCC---C----C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPLGL---Y----S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~~~---~----s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
|+||+|.+|. .|+++|+..... . + ++++.++++..++.+..... ..+||+|||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999986 599999963211 1 1 23466778888876544332 3469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999987643 7899999999998765 99999999999999999999986
Q ss_pred c
Q 000481 1440 T 1440 (1467)
Q Consensus 1440 ~ 1440 (1467)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 3
No 164
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=370.75 Aligned_cols=216 Identities=24% Similarity=0.394 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999963 3599999999999999999999999999999999999997 48999999999864 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|..|+++|+... +..+ ++.+.++++.+++.+.+. +.+++ ...+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 788999999999999999999999521 1112 345777888888754432 23444 34689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 238 ~ 238 (254)
T PRK14273 238 F 238 (254)
T ss_pred h
Confidence 6
No 165
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-39 Score=364.10 Aligned_cols=202 Identities=24% Similarity=0.408 Sum_probs=176.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~~ 1292 (1467)
|+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEeccCCcccc-cchHHhcCCC----CC---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~----~~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++|+||+|.+|. .|+++|+... +. ..++++.++++..++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999987 5999998521 11 12456788999999876654443 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
|||+++|+||+|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 47899999999999976 899999999975
No 166
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=376.37 Aligned_cols=214 Identities=25% Similarity=0.420 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC--CCCHHHHhhc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVK 1292 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~--~i~l~~LR~~ 1292 (1467)
-|+++|++++|+. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4999999999963 345999999999999999999999999999999999999999999999999984 3456778999
Q ss_pred cEEeccCC--cccccchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1293 LSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1293 i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
++|+||+| .+|+.|+++|+... ...+. +.+.++++.+++.++.. ....+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 57899999999521 11232 34667788888765432 2345799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||||+++|+||||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+. .||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999987653 789999999999997 4999999999999999999998863
No 167
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.8e-39 Score=369.33 Aligned_cols=211 Identities=29% Similarity=0.433 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR~~ 1292 (1467)
|+++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 789999999962 3459999999999999999999999999999999999999999999999999987654 457889
Q ss_pred cEEeccCCcccc-cchHHhcCCC------------CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL------------GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~------------~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
++++||+|.+|. .|+++|+... +.. .++++.++++..++.+.... ...+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----------RADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHH
Confidence 999999999886 5999999521 001 13456777888777554322 34579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
||||++||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998764 37899999999999865 99999999999999999
Q ss_pred hhHHh
Q 000481 1434 PSKLM 1438 (1467)
Q Consensus 1434 p~~Ll 1438 (1467)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99873
No 168
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=366.55 Aligned_cols=466 Identities=19% Similarity=0.197 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccch------hHHHHHhhhhhHhhhhhh
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVG------RILTRLSSDLSILDFDIP 1010 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G------~ilnR~s~D~~~id~~l~ 1010 (1467)
.+.+|..+..+..++...+.++...+..+....+-+.++++-+... .||-..-.| ..=+|+..|+...-...-
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 4677888888888888889999999999999999999999888877 444333332 334788888876554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000481 1011 FSIVFVAASGTELLAIIGIMTF--------------VTWQVL-----VVAIFAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1467)
Q Consensus 1011 ~~l~~~~~~~~~~l~~~~~~~~--------------~~~~~~-----~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~s 1071 (1467)
.....++.+++++++..+++-. ..|.+. +-++...++..++++...+-+-+-.+.|+.-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 3333344444444433333320 011111 111122222334556666666666666666554
Q ss_pred hhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccH
Q 000481 1072 PVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLVLIPRGYVAP 1150 (1467)
Q Consensus 1072 p~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~~~~~~ 1150 (1467)
.+ .-..+....|-.|+.|+...++..+..+.-...+......+.++...-...+-+.+.+-.+ .+-....|.++-
T Consensus 247 ~L----vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SL----VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HH----HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 33 3334556678888887766555554444333333222222322222222222111111111 111234678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC------CCCCCCCcCCCCCCCCCCCcceEEEEEEEEE
Q 000481 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI------PPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1467)
Q Consensus 1151 g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~------~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~ 1224 (1467)
|.+..+.+...++...+.|++..+..+..-..++.|+.++.+. +++.+.... .+....-.....|+|+|+++.
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 8888888888888899999999999999999999999998732 222211100 000000001468999999999
Q ss_pred eCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccc
Q 000481 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1467)
Q Consensus 1225 Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~ 1304 (1467)
-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+=. -+++-++||.|.+=.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 86555 689999999999999999999999999999999999999999987641 246889999999999
Q ss_pred cchHHhcC-CCCC--CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1305 GSVRTNLD-PLGL--YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1305 gTIR~NLd-p~~~--~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
||+||-|. |... ++|+|+.++|.+|+|.+++.++.+-- .-..-||+||||||++||.+|+||++++||||||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 99999984 4433 89999999999999999999875422 2345699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeC
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSY 1425 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~ 1425 (1467)
+||.++|..+.+.++++.+++|+|.|+||.....-.++.+-+++
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999999999999999999776666677665543
No 169
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=370.65 Aligned_cols=219 Identities=23% Similarity=0.455 Sum_probs=188.7
Q ss_pred CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--C
Q 000481 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--M 1284 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i 1284 (1467)
....|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999963 359999999999999999999999999999999999987 589999999999863 5
Q ss_pred CHHHHhhccEEeccCCcccccchHHhcCCCC---CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1285 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
+..++|++++++||+|.+|.+|+++|+.... .. .++++.++++.+++.+.+. ........+||+|||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 6678899999999999999999999996321 11 1355677888887754332 222334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeC-----------C
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY-----------G 1426 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~-----------G 1426 (1467)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++ |
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999999999999987667899999999999865 999999996 6
Q ss_pred EEEEecChhHHhc
Q 000481 1427 KLLEYDEPSKLME 1439 (1467)
Q Consensus 1427 ~ivE~g~p~~Ll~ 1439 (1467)
+++|.|+++++++
T Consensus 241 ~~~~~~~~~~~~~ 253 (269)
T PRK14259 241 YLVEFNETKKIFN 253 (269)
T ss_pred eEEEeCCHHHHHh
Confidence 7999999999986
No 170
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=376.30 Aligned_cols=213 Identities=26% Similarity=0.400 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC----CCHHH
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~----i~l~~ 1288 (1467)
|+++|++++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996433 259999999999999999999999999999999999999999999999999963 34567
Q ss_pred HhhccEEeccCC--cccccchHHhcCCCC---CCCH----HHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhHH
Q 000481 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1289 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
+|++++|++|+| .+|.+|+.+|+.... ..+. +++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 789999999995211 1222 3466778888874 2322 22357999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
||++|||||+.+|+||||||||++||+.+.+.+.+.+++.. .++|||+|||+++.+.. ||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 47899999999998854 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 875
No 171
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=367.99 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=185.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999743 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCch--HHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKT--TISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~--~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+||+|.+|. .|+++|+... ...+ ++++.++++..++.+ .. .....+||+|||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHHH
Confidence 999999996 6999998522 1112 345677788877753 22 2234679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++++|++|+|||||++||.++.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999998764 37999999999998765 99999999999999999999876
No 172
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=368.15 Aligned_cols=212 Identities=30% Similarity=0.480 Sum_probs=183.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC---HHHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---l~~LR~~ 1292 (1467)
++++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 5789999999642 45999999999999999999999999999999999999999999999999998876 5668899
Q ss_pred cEEeccCCcccc-cchHHhcCCC------------CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL------------GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~------------~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
++++||++.+|. .|+++|+... +.. .++++.++++..++.+... ....+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-----------QRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-----------CCcccCCHH
Confidence 999999999887 6999998421 111 2345667788877754332 234579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
||||++||||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 37999999999999984 99999999999999999
Q ss_pred hhHHhc
Q 000481 1434 PSKLME 1439 (1467)
Q Consensus 1434 p~~Ll~ 1439 (1467)
++++.+
T Consensus 229 ~~~~~~ 234 (241)
T cd03256 229 PAELTD 234 (241)
T ss_pred HHHhhH
Confidence 998743
No 173
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-39 Score=371.89 Aligned_cols=215 Identities=27% Similarity=0.448 Sum_probs=188.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeccCC--cccccchHHhcCCC---CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp--~LF~gTIR~NLdp~---~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|+||+| .++..|+++|+... ...+++ .+.++++..++.++....+ .+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 45577999999531 112333 3566778888766554433 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||+++|++|||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999987643 4899999999999888999999999999999999988763
No 174
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.1e-39 Score=350.49 Aligned_cols=178 Identities=30% Similarity=0.565 Sum_probs=166.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+...+++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434699999999999999999999999999999999999999999999999998776 6678999999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.+|++|+++|+ ..+||+|||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEec
Q 000481 1376 LDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g 1432 (1467)
|||||++||..+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999877789999999999999889999999999999865
No 175
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.7e-39 Score=355.74 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCC
Q 000481 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 672 (1467)
++++|++++|++... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 478999999965311 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCH
Q 000481 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1467)
Q Consensus 673 ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~ 752 (1467)
|++||+.++..+++++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++||||++++|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877766777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEccCcchhhcCCEEEEEeCCe
Q 000481 753 HTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1467)
Q Consensus 753 ~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1467)
+..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99998887665443 45799999999999988899999999985
No 176
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=356.41 Aligned_cols=202 Identities=31% Similarity=0.425 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.|.++|++..|+. .++++|||++|+.||.+|+.|||||||||||++|+|+..|++|.|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4788889988863 4689999999999999999999999999999999999999999999987 4
Q ss_pred EEEEccCCcCC-CCCHHHHHhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 660 IAYVSQTSWIQ-SGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 660 i~yv~Q~~~l~-~~ti~eNi~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
||||+|+.-+| ..||.|||.||.+. .+.+..+.++.|+|+..-+. ....||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHHHH
Confidence 99999998776 57999999999732 23466777888888654444 45689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||+..+|++|||||||+|||++..+.+-..+.+...+ |.|+++|||+.++.. .||+|++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999886655544433 889999999999865 599999999999999999999976
Q ss_pred cC
Q 000481 808 AG 809 (1467)
Q Consensus 808 ~~ 809 (1467)
.+
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 54
No 177
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-39 Score=365.08 Aligned_cols=208 Identities=22% Similarity=0.348 Sum_probs=180.2
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---H
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---L 1289 (1467)
-++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hccEEeccCCccccc-chHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 R-VKLSIIPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R-~~i~iIpQdp~LF~g-TIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
| ++++|+||+|.+|.+ |+++|+.. +.... ++++.++++..++.+..... ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999976 99999852 11122 24577888888876543332 35799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEecC
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~ 1433 (1467)
++||||++++|+||||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998763 4799999999999999999999999999998765
No 178
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=370.14 Aligned_cols=219 Identities=23% Similarity=0.413 Sum_probs=189.8
Q ss_pred CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--C
Q 000481 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--M 1284 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i 1284 (1467)
+.+.|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999963 4599999999999999999999999999999999999975 89999999999975 3
Q ss_pred CHHHHhhccEEeccCCcccccchHHhcCCC---CCC--C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPL---GLY--S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1285 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~--s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
+...+|++++++||+|.+|.+|+++|+... ... + ++++.++++.+++.+.+.. .......+||+
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 566789999999999999999999999521 111 1 3456788998888654432 12334567999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecCh
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p 1434 (1467)
|||||++|||||+++|++|||||||++||..+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999965 899999999999999999
Q ss_pred hHHhc
Q 000481 1435 SKLME 1439 (1467)
Q Consensus 1435 ~~Ll~ 1439 (1467)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 99986
No 179
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.5e-39 Score=366.69 Aligned_cols=215 Identities=27% Similarity=0.474 Sum_probs=187.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCCC--CHHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICSM--GLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~i--~l~~ 1288 (1467)
|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.+++.. +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999999763 4567
Q ss_pred HhhccEEeccCCcccccchHHhcCC----CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp----~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
.|++++|+||+|.+|..|+++|+.. .+..+ ++++.++++..++.+++.. .+ .....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RL----HDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---Hh----hCCcccCCHHHHHH
Confidence 7899999999999999999999952 11112 3457788888888744421 12 23345799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999875 99999999999999999999986
No 180
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-39 Score=361.97 Aligned_cols=202 Identities=26% Similarity=0.397 Sum_probs=175.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 578999999953 459999999999999999999999999999999999999999999999999987543 5778999
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 5999999521 1112 345677888888766544333 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||.++.+.+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999998866 9999999999999875
No 181
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.7e-39 Score=328.19 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
+.++++.|+|.... -..+++|++||++||+||||||||||+++|+|+..|.+|+|.++| .++++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 56788999996421 356899999999999999999999999999999999999999988 39999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|+..+|. .||++||.+|.. .+.++++.++...++....+.+|. +|||||||||||||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99999986 499999999953 345788889999999999998885 79999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
++.+|++||||||||||.-+.+....+.+.. .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999888765433332 367899999999999876 8999999999999999999987643
No 182
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.4e-39 Score=384.67 Aligned_cols=199 Identities=24% Similarity=0.399 Sum_probs=178.4
Q ss_pred CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH----hhccEEeccCCccccc
Q 000481 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL----RVKLSIIPQEPTLFRG 1305 (1467)
Q Consensus 1230 ~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g 1305 (1467)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+...+ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -chHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000481 1306 -SVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377 (1467)
Q Consensus 1306 -TIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLD 1377 (1467)
|+++|+.. +...+ ++++.++|+.++|.++....| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999942 11122 356778899999877655544 368999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1378 EANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1378 EaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999998753 37999999999998755 99999999999999999999987
No 183
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=369.15 Aligned_cols=217 Identities=28% Similarity=0.413 Sum_probs=187.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCC--CCCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDIC--SMGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~--~i~l~ 1287 (1467)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999953 3599999999999999999999999999999999999987 4999999999997 45666
Q ss_pred HHhhccEEeccCCccccc-chHHhcCCC---CC--CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEPTLFRG-SVRTNLDPL---GL--YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~--~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
.+|++++++||+|.+|.+ |+++|+... .. .. ++++.++++..++.+.+.. .......+||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 789999999999999976 999999521 11 11 2456778888887654322 1233456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999875 99999999999999999999
Q ss_pred Hhcc
Q 000481 1437 LMET 1440 (1467)
Q Consensus 1437 Ll~~ 1440 (1467)
+++.
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 9863
No 184
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.7e-39 Score=366.24 Aligned_cols=211 Identities=27% Similarity=0.428 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999953 359999999999999999999999999999999999999999999999999998877654 57799
Q ss_pred EeccCCccccc-chHHhcCCCC----CC-------------CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLG----LY-------------SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~----~~-------------sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
++||+|.+|.+ |+++|+.... .. .++.+.++++..++.+. .......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999987 9999984211 10 12234556666655432 23334579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecCh
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p 1434 (1467)
||||++||||++++|++|||||||++||..+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998754 57899999999999976 999999999999999999
Q ss_pred hHHhc
Q 000481 1435 SKLME 1439 (1467)
Q Consensus 1435 ~~Ll~ 1439 (1467)
+++++
T Consensus 228 ~~~~~ 232 (236)
T cd03219 228 DEVRN 232 (236)
T ss_pred HHhcc
Confidence 99865
No 185
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=337.62 Aligned_cols=472 Identities=20% Similarity=0.218 Sum_probs=331.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+.-|.++..+..+...+.......++...-.+++.++.++++.+|+.-+++...++++.++++|+..+...+ ..+..+.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~ 129 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHHH
Confidence 333444444445555566667778888888999999999999999999999999999999999999998332 3345567
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
++++-.+++.+..++.+|+...+++..+++..+.+...++..-+-.+...++...++++++..++|.+..+....-.+..
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 77777888888899999888776665555544433222211111111222334568889999999999988776544433
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHH---HHHHHHHH
Q 000481 1098 QNYLK------LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYA---FTLTGTQV 1168 (1467)
Q Consensus 1098 ~~~~~------~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~---~~l~~~~~ 1168 (1467)
....- .-+..............|-.+.+-.+ .++..++...-...... .+.+++ +-+-+++.
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~l-------IGlvf~lal~~~w~st~--~a~tivlvlLflr~pL~ 280 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGL-------IGLVFWLALSLGWASTN--VAATIVLVLLFLRTPLL 280 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccchhh--HHHHHHHHHHHHhhHHH
Confidence 32211 11111111111123344544322111 11111111111111111 222232 23457788
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEE
Q 000481 1169 FLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGV 1248 (1467)
Q Consensus 1169 ~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgI 1248 (1467)
.++.....+-.+.++..||.++...|..+. -...++.++| ..||++||.|.|.+.. .-+..||++|+.||.|=|
T Consensus 281 s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFl 354 (546)
T COG4615 281 SAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFL 354 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEE
Confidence 888888888899999999988865332221 1112222335 4699999999997654 357889999999999999
Q ss_pred EcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHH
Q 000481 1249 VGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK 1328 (1467)
Q Consensus 1249 VGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~ 1328 (1467)
+|.+||||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++ .|-+..+.+.+.+-|++
T Consensus 355 iG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~Lqr 430 (546)
T COG4615 355 IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQR 430 (546)
T ss_pred ECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999765 34444688888777777
Q ss_pred cCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Q 000481 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE--FSNCTVIT 1406 (1467)
Q Consensus 1329 ~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~--~~~~TvI~ 1406 (1467)
..+....+- .+|==+ -..||-|||.|+++--|++-+.+|+++||=-|.-|+.=.+...+.+--. ..|+||+.
T Consensus 431 Lel~~ktsl-~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~a 504 (546)
T COG4615 431 LELAHKTSL-NDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA 504 (546)
T ss_pred HHHhhhhcc-cCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEE
Confidence 665543321 121111 1358999999999999999999999999999999999888776665322 25999999
Q ss_pred EccCchhhcccCEEEEEeCCEEEEecChhH
Q 000481 1407 VAHRVPTVIDSDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1407 IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|+|+-.-...+||++.|++|+++|. +|++
T Consensus 505 IsHDd~YF~~ADrll~~~~G~~~e~-tge~ 533 (546)
T COG4615 505 ISHDDHYFIHADRLLEMRNGQLSEL-TGEE 533 (546)
T ss_pred EecCchhhhhHHHHHHHhcCceeec-cccc
Confidence 9999999999999999999999996 4444
No 186
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-39 Score=371.62 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=190.4
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCc---ceEEECCeeCCCCCHHHHh
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~---G~I~IDG~dI~~i~l~~LR 1290 (1467)
+.|+++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996443459999999999999999999999999999999999999987 8999999999988888889
Q ss_pred hccEEeccCC--cccccchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1291 VKLSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1291 ~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
++++|+||+| .+++.|+++|+... ...++ +++.++++.+++.++....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999621 12333 34778899999877655544 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+||||++++|++|||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987653 789999999999998899999999999999999999875
No 187
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-39 Score=366.86 Aligned_cols=217 Identities=29% Similarity=0.466 Sum_probs=188.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCCCHHHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i~l~~L 1289 (1467)
.|+++|++++|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hhccEEeccCCccc-ccchHHhcCCC---CC--CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1290 RVKLSIIPQEPTLF-RGSVRTNLDPL---GL--YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF-~gTIR~NLdp~---~~--~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
|++++++||+|.+| ..|+++|+... .. .. ++++.++++.+++.+.+.. .+|.. ..+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~----~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAP----AGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCC----cccCCHHHHH
Confidence 99999999999765 57999999521 11 01 3467888999988654322 23433 3579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999864 9999999999999999999998
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 63
No 188
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.9e-39 Score=347.90 Aligned_cols=194 Identities=28% Similarity=0.413 Sum_probs=163.5
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++..|..+. ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999996432 24689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEccCCcC-CCCCHHHHHhcC----CCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWI-QSGSIRDNILYG----KPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l-~~~ti~eNi~~g----~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.||||+|+..+ .+.|++|||.+. ... ..++.++.++..++.+.... .+..+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 39999999765 567999999953 221 13445556666666654441 34568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeE
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1467)
|||||++.+|++++.||||.+||.++++.+++.+..... .|+|+|+|||+......|||++.|+||++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999876655543 4899999999999999999999999999543
No 189
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=374.56 Aligned_cols=203 Identities=30% Similarity=0.424 Sum_probs=179.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~ 661 (1467)
..++++|++.+|. +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEccCCcCC-CCCHHHHHhcCCC----CC-H---HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 662 YVSQTSWIQ-SGSIRDNILYGKP----MD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 662 yv~Q~~~l~-~~ti~eNi~~g~~----~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|+|+.-|| +.||+|||.||.. .. + +++.++++..+|.+.-+ ++...|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 999998887 5699999999975 12 2 36777888888876544 456799999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||..+|+++|||||+||||.+.+.++-.++.+... .|.|.|+|||+.++. ..+|||+||++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999998776665433 489999999999874 568999999999999999999998765
No 190
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-39 Score=326.09 Aligned_cols=210 Identities=28% Similarity=0.443 Sum_probs=185.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|.+++|.++|. ..+. ..+++|++||+|||+|+||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~-~~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYG-HLPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeC-cceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 56789999995 3332 47899999999999999999999999999999999999999999999987765 467999
Q ss_pred eccCCccccc-chHHhcC----CCCCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLD----PLGLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLd----p~~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+.||..||.- ||++|+. |.-+. ..+.+..++.++|+.++...+|. .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999976 9999985 33222 34568999999999999999997 4799999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccCC
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNS 1442 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~~ 1442 (1467)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++|+|||++.|+-+++++.++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999888888776543 47899999999999866 99999999999999999999998443
No 191
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-39 Score=364.43 Aligned_cols=213 Identities=26% Similarity=0.434 Sum_probs=185.0
Q ss_pred EEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHh
Q 000481 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR 1290 (1467)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12699999999999999999999999999999999999999999999999999887654 357
Q ss_pred hccEEeccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....+ .+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 89999999999997 5999998521 1122 346778888888866544332 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++++|++|||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998764 37899999999999876 99999999999999999998865
No 192
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.7e-39 Score=377.13 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCC-----------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC
Q 000481 1215 RIELRQLKIRYRPN-----------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS 1283 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-----------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~ 1283 (1467)
-++++|++++|..+ ...+++||||+|++||.+||||+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999531 2459999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhhccEEeccCC--ccc-ccchHHhcC----CCC-CCCH----HHHHHHHHHcCCch-HHhhCCCCcccccc
Q 000481 1284 MGLKD---LRVKLSIIPQEP--TLF-RGSVRTNLD----PLG-LYSD----DEIWKALEKCQLKT-TISSLPNKLDSSVS 1347 (1467)
Q Consensus 1284 i~l~~---LR~~i~iIpQdp--~LF-~gTIR~NLd----p~~-~~sd----~ei~~aL~~~~l~~-~i~~lp~gLdt~v~ 1347 (1467)
++.++ +|++|+|||||| .+| ..||++|+. .+. ..+. +.+.++++.+++.+ ....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87554 678999999999 477 479999984 121 2343 33556788888742 2222
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEe
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLS 1424 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~ 1424 (1467)
...+||||||||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 2347999999999999999999999999999999999999999999987543 7899999999999986 99999999
Q ss_pred CCEEEEecChhHHhc-cCChhHH
Q 000481 1425 YGKLLEYDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1425 ~G~ivE~g~p~~Ll~-~~~~f~~ 1446 (1467)
+|+|+|.|+++++++ +...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 999999999999987 3444544
No 193
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-39 Score=369.01 Aligned_cols=216 Identities=24% Similarity=0.427 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCCCC--HH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICSMG--LK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~i~--l~ 1287 (1467)
.-+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++++.+ ..
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 3579999999953 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC---CC------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL---GL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+|||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 678999999999999999999998521 11 12345778889888865432 122344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987678999999999999875 999999999999999999999
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
.+
T Consensus 236 ~~ 237 (251)
T PRK14244 236 FK 237 (251)
T ss_pred hc
Confidence 87
No 194
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-39 Score=347.16 Aligned_cols=223 Identities=28% Similarity=0.406 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.+++++|+.+|.. ..||+||||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999965 5699999999999999999999999999999999999999999999999988543 46799
Q ss_pred EeccCCccccc-chHHhcCC-CCC--C----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDP-LGL--Y----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp-~~~--~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
||+|++.||+= |+++|+.. ... . ..+...++|+.+||.+|-...|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999985 99999842 111 1 23468899999999999888886 479999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeC--CEE---EEecChhHHh
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSY--GKL---LEYDEPSKLM 1438 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~--G~i---vE~g~p~~Ll 1438 (1467)
|+.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||+++.... +|||+||.+ |+| ++.+-|..-.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR~ 224 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRI 224 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCcc
Confidence 999999999999999999999999999887644 36899999999988654 999999999 544 3333322113
Q ss_pred ccCChhHHHHHHHHHhc
Q 000481 1439 ETNSSFSKLVAEYWSSC 1455 (1467)
Q Consensus 1439 ~~~~~f~~lv~~~~~~~ 1455 (1467)
..+..|..+.++-+..-
T Consensus 225 ~~~~~f~~l~~~i~~~L 241 (248)
T COG1116 225 RGDPEFLELREELLEEL 241 (248)
T ss_pred ccChHHHHHHHHHHHHH
Confidence 35667888877766643
No 195
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=372.02 Aligned_cols=215 Identities=25% Similarity=0.391 Sum_probs=184.6
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH----hhc
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL----RVK 1292 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L----R~~ 1292 (1467)
.++|++.+|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888853 458999999999999999999999999999999999999999999999999988776543 468
Q ss_pred cEEeccCCcccc-cchHHhcCCC---CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++++||+|.+|. .|+++|+... ... .++++.++++.+++.+.....| .+||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 6999998521 111 1345778899998877665544 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-c
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-T 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~ 1440 (1467)
||++++|+||||||||++||..+.+.+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|++++.|+++++++ +
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998764 37999999999999865 99999999999999999999987 4
Q ss_pred CChh
Q 000481 1441 NSSF 1444 (1467)
Q Consensus 1441 ~~~f 1444 (1467)
...|
T Consensus 253 ~~~~ 256 (269)
T cd03294 253 ANDY 256 (269)
T ss_pred CcHH
Confidence 3333
No 196
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-39 Score=368.48 Aligned_cols=217 Identities=25% Similarity=0.459 Sum_probs=189.6
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l 1286 (1467)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999953 469999999999999999999999999999999999996 589999999999964 346
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|+.++++||+|.+|.+|+++|+... +..+ ++++.++++.+++.+.+.. .......+||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6789999999999999999999999531 1112 3456778888888655432 23345668999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||+|||||++++|++|||||||++||..+...+.+.|++..++.|+|+|+|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
.+
T Consensus 250 ~~ 251 (267)
T PRK14237 250 FT 251 (267)
T ss_pred hc
Confidence 86
No 197
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.7e-39 Score=367.28 Aligned_cols=215 Identities=27% Similarity=0.396 Sum_probs=186.3
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-------
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG------- 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~------- 1285 (1467)
++.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999963 35999999999999999999999999999999999999999999999999986531
Q ss_pred ------HHHHhhccEEeccCCccccc-chHHhcCC----CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1286 ------LKDLRVKLSIIPQEPTLFRG-SVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1286 ------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp----~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
...+|++++|+||+|.+|.+ |+++|+.. ..... ++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 35678899999999999975 99999852 11112 345777888888765531 1234
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1351 ~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
..||+|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998764 48999999999999987 899999999999
Q ss_pred EEecChhHHhc
Q 000481 1429 LEYDEPSKLME 1439 (1467)
Q Consensus 1429 vE~g~p~~Ll~ 1439 (1467)
++.|+++++++
T Consensus 231 ~~~~~~~~~~~ 241 (257)
T PRK10619 231 EEEGAPEQLFG 241 (257)
T ss_pred EEeCCHHHhhh
Confidence 99999999876
No 198
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.8e-39 Score=381.22 Aligned_cols=215 Identities=25% Similarity=0.377 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999953 4589999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EeccCCcccc-cchHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
++||++.+|. .|+++|+.. .. ..+ ++.+.++++..++.++....| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 599999952 11 122 346778888888877655443 4689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.+ +..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987643 7899999999999865 99999999999999999999998 444
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 44
No 199
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.8e-39 Score=361.59 Aligned_cols=202 Identities=27% Similarity=0.411 Sum_probs=174.1
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH----H
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~----L 1289 (1467)
|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hhccEEeccCCccccc-chHHhcCCC---CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+..... ..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-----------PSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-----------hhhcCHHHHHHH
Confidence 6789999999999987 999998521 111 134577788888776544332 347999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+||||++++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+.-||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998654 7899999999999888999999999974
No 200
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-39 Score=370.31 Aligned_cols=216 Identities=23% Similarity=0.385 Sum_probs=189.6
Q ss_pred eEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
-|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEeccCC--cccccchHHhcCCC-C--CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEP--TLFRGSVRTNLDPL-G--LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp--~LF~gTIR~NLdp~-~--~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+|+||+| .++..|+.+|+... . ..+++ ++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 46788999999521 1 23333 356788888887654432 246999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
||++++|+||||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+..||+|++|++|++++.|+++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999987643 78999999999999889999999999999999999988643
No 201
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=366.94 Aligned_cols=216 Identities=25% Similarity=0.412 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999864 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCCC---CC-----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY-----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|+.++++||+|.+|++|+++|+.... .. .++++.++++.+++++... ..++ ....+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNLD----RNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHhc----cChhhCCHHHHH
Confidence 6788999999999999999999996321 11 1245667788887753211 1222 345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987677899999999999876 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 235 ~ 235 (251)
T PRK14251 235 I 235 (251)
T ss_pred h
Confidence 6
No 202
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-39 Score=366.21 Aligned_cols=216 Identities=25% Similarity=0.474 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc---cCC--CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEP--AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl---~~~--~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.|+++|++++|.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999953 4599999999999999999999999999999999997 344 589999999999764 346
Q ss_pred HHhhccEEeccCCcccccchHHhcCC-C---CC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP-L---GL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp-~---~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+.. . +. ..+++++++++.+++.+.+.. .....+.+||+||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 78899999999999999999999952 1 11 123457788888888655432 223445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987778999999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 234 ~ 234 (250)
T PRK14245 234 T 234 (250)
T ss_pred c
Confidence 7
No 203
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-39 Score=375.49 Aligned_cols=222 Identities=25% Similarity=0.406 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCC--------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH
Q 000481 1215 RIELRQLKIRYRPN--------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~--------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l 1286 (1467)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhhccEEeccCCc--cccc-chHHhcC-CC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCC
Q 000481 1287 K---DLRVKLSIIPQEPT--LFRG-SVRTNLD-PL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352 (1467)
Q Consensus 1287 ~---~LR~~i~iIpQdp~--LF~g-TIR~NLd-p~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~n 1352 (1467)
. .+|++|++|||||. |+.. |+.+|+. +. ...+ .+++.++|+.+++.+. .++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCC----Ccc
Confidence 4 56889999999994 5553 8888873 21 1112 2457788899888531 23332 346
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEE
Q 000481 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429 (1467)
Q Consensus 1353 LS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv 1429 (1467)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|++.. .+.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 37899999999999975 9999999999999
Q ss_pred EecChhHHhc-cCChhHH
Q 000481 1430 EYDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1430 E~g~p~~Ll~-~~~~f~~ 1446 (1467)
|.|+++++++ +...|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 9999999997 3444543
No 204
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-39 Score=359.42 Aligned_cols=208 Identities=25% Similarity=0.397 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|+++++
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 579999999953 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred eccCCccccc-chHHhcCC----CCC---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP----LGL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp----~~~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. .+. ..++++.++++..++.+.....| .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999875 99999842 111 12346778889988876544332 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+.+|++|||||||++||.++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987542 7899999999999876 999999999999999998874
No 205
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.5e-39 Score=359.16 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=177.6
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 269999999999999999999999999999999999999999999999999986 456788999
Q ss_pred EEeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++||+|.+|.+ |+++|+... ...+ ++++.++++..++.+.... ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998421 1112 3456778888887655433 34579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998763 47899999999999876 9999999999998865
No 206
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-39 Score=369.82 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=188.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++++
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999533 359999999999999999999999999999999999999999999999999988888889999999
Q ss_pred eccCC--cccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1296 IPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1296 IpQdp--~LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+||+| .+|+.|+++|+.... ..+ ++.+.++++.+++.+.....| ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 478889999995211 123 235778899988877655443 3689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
|+++|++|||||||++||..+.+.+.+.+++..+ ++|+|++||+++.+. -||||++|++|++++.|+++++++..
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 9999999999999999999999999999987643 789999999999996 59999999999999999999998643
No 207
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-39 Score=373.16 Aligned_cols=215 Identities=21% Similarity=0.313 Sum_probs=182.8
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC--------
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS-------- 1283 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~-------- 1283 (1467)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999996432 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhhccEEeccCC--cccccchHHhcCCCC---CCC----HHHHHHHHHHcCCc-hHHhh
Q 000481 1284 ----------------MGLKDLRVKLSIIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLK-TTISS 1337 (1467)
Q Consensus 1284 ----------------i~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~-~~i~~ 1337 (1467)
.+...+|++++|+||+| .+|..|+++||.... ..+ ++++.++++.+++. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467899999999987 688889999995211 123 24467788888875 3332
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID 1416 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~ 1416 (1467)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2235799999999999999999999999999999999999999999998753 47999999999998755
Q ss_pred -cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1417 -SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1417 -~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||||+||++|++++.|+|+++.+.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998763
No 208
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-39 Score=365.20 Aligned_cols=216 Identities=25% Similarity=0.431 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~i--~l~ 1287 (1467)
-++++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ | ++|+|.+||.+++.. +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 359999999999999999999999999999999999853 6 499999999999753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCC----CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP----LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp----~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|+.++++||+|.+|+.|+++|+.. .+.. .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 67889999999999999999999852 1111 13456677888887654332 223445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 236 ~ 236 (252)
T PRK14239 236 M 236 (252)
T ss_pred h
Confidence 6
No 209
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=364.57 Aligned_cols=218 Identities=23% Similarity=0.460 Sum_probs=187.9
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCCC--C
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICSM--G 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~i--~ 1285 (1467)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 459999999999999999999999999999999999986 3 689999999999753 4
Q ss_pred HHHHhhccEEeccCCcccc-cchHHhcCC-C---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1286 LKDLRVKLSIIPQEPTLFR-GSVRTNLDP-L---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~-gTIR~NLdp-~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
...+|++++++||++.+|. .|+++|+.. + +..+ ++++.++++.+++.+.+... ......+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 5578899999999999998 599999952 1 1122 24467778888876544321 22345689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
||||++||||++++|++|||||||++||..+.+.+.+.|++..++.|+|+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred HHhc
Q 000481 1436 KLME 1439 (1467)
Q Consensus 1436 ~Ll~ 1439 (1467)
++..
T Consensus 233 ~~~~ 236 (252)
T PRK14256 233 KIFT 236 (252)
T ss_pred HHHh
Confidence 9976
No 210
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-39 Score=364.90 Aligned_cols=217 Identities=25% Similarity=0.455 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678999999999999999999999521 111 23446778888887654422 233455689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987678999999999998765 9999999999999999999998
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
+.
T Consensus 234 ~~ 235 (250)
T PRK14262 234 ER 235 (250)
T ss_pred hC
Confidence 63
No 211
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=366.75 Aligned_cols=216 Identities=25% Similarity=0.426 Sum_probs=186.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999953 3599999999999999999999999999999999999985 799999999998753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
.+|+.++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..+++ ...+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~----~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKS----PALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcC----ChhhCCHHHHHH
Confidence 678899999999999999999999521 1122 234677888888754322 12333 345799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++|||||+++|+||+|||||++||.++...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+|+++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999876 99999999999999999999986
No 212
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.2e-39 Score=363.57 Aligned_cols=211 Identities=24% Similarity=0.355 Sum_probs=184.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 799999999953 359999999999999999999999999999999999999999999999999988876654 56799
Q ss_pred EeccCCccccc-chHHhcCCCCC------------C---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLGL------------Y---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~~------------~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
++||+|.+|.+ |+++|++.... . .++++.++++..++.+.. .....+||+|||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 99999999987 99999953210 0 234566777777765432 223457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|++|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999976 999999999999999999998
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
+.
T Consensus 230 ~~ 231 (242)
T TIGR03411 230 QA 231 (242)
T ss_pred hc
Confidence 75
No 213
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1e-38 Score=361.20 Aligned_cols=211 Identities=28% Similarity=0.393 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 789999999953 45999999999999999999999999999999999999999999999999998776544 468999
Q ss_pred eccCCcc-cccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTL-FRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~L-F~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+ +.+|+++|+.... ..+ ++++.+.++..++.+. ......+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 4679999995321 122 2345566666665433 2333457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
+++|+||||||||++||..+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998764 47899999999999988999999999999999999999874
No 214
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-39 Score=356.67 Aligned_cols=202 Identities=29% Similarity=0.437 Sum_probs=178.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999953 35999999999999 99999999999999999999999999999999999998877 778999999
Q ss_pred eccCCccccc-chHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. +...+ ++++.++++..++.+... +.+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 99999852 11112 345778888888876533 222 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999975 9999999999999865
No 215
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.5e-39 Score=359.17 Aligned_cols=212 Identities=25% Similarity=0.432 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 579999999953 359999999999999999999999999999999999999999999999999988877654 67899
Q ss_pred EeccCCccccc-chHHhcCCCCC-CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLGL-YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~~-~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
|+||+|.+|.+ |+++|+..... .. .+++.++++..+ .+++.++ ....+||+|||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~~~~----~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKERRK----QLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhhhhh----CchhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999953211 11 122333444331 1222233 344579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++|++|+|||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998764 47899999999999866 99999999999999999988753
No 216
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=363.78 Aligned_cols=216 Identities=22% Similarity=0.412 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999963 359999999999999999999999999999999999987 3 59999999999864 4556
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+... +..++ +++.++++..++.+.+.. .......+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 788999999999999999999998421 11222 235567778877654422 123345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987678999999999999875 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 6
No 217
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-38 Score=366.50 Aligned_cols=221 Identities=22% Similarity=0.352 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~ 1291 (1467)
-|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4999999999953 4599999999999999999999999999999999999999999999999999877643 4578
Q ss_pred ccEEeccCCccccc-chHHhcCC----CCCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1292 KLSIIPQEPTLFRG-SVRTNLDP----LGLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~g-TIR~NLdp----~~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
+++++||++.+|.+ |+++|+.. ....+. +.+.++++..++.+.... . ..+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-------M----PSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-------C----hhhCCHHHHHHHH
Confidence 89999999999987 99999852 111222 345667787777554322 2 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++++|++|||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999987643 7899999999999876 99999999999999999999987
Q ss_pred c-CChhHHHH
Q 000481 1440 T-NSSFSKLV 1448 (1467)
Q Consensus 1440 ~-~~~f~~lv 1448 (1467)
+ ...++.++
T Consensus 234 ~~~~~~~~~~ 243 (269)
T PRK11831 234 NPDPRVRQFL 243 (269)
T ss_pred CCcHHHHHHH
Confidence 3 33334443
No 218
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=377.96 Aligned_cols=210 Identities=29% Similarity=0.416 Sum_probs=185.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3899999999963 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EeccCCccccc-chHHhcCC-CC------CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDP-LG------LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp-~~------~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
|+||++.+|.. |+++|+.. .. ..+ ++++.++++.+++.++....| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 99999962 11 122 345677888888876654443 368999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|++|+|||||++||..+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999987654 6899999999999876 99999999999999999999987
No 219
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7e-39 Score=354.68 Aligned_cols=198 Identities=25% Similarity=0.397 Sum_probs=173.6
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 459999999999999999999999999999999999999999999999999864 4567899999
Q ss_pred ccCC--cccccchHHhcCCCC---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1297 PQEP--TLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1297 pQdp--~LF~gTIR~NLdp~~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
||+| .+|..|+++|+.... ...++++.++++.+++.++....| ..||+|||||++||||++++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467899999996321 123457889999999887655444 368999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhcc-cCEEEEEeCCEEE
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv 1429 (1467)
++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.+ ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999876 357899999999999976 9999999999985
No 220
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.5e-38 Score=358.66 Aligned_cols=217 Identities=32% Similarity=0.507 Sum_probs=191.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|+++.|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999653335799999999999999999999999999999999999999999999877 399
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888999999998754 344556677777888888899999988888899999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
+||||||++||+++.+.+.+.+.... +|+|+|++||+++.+..||+|++|++|++++.|+.+++......+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 231 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVY 231 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhH
Confidence 99999999999999999876554444 789999999999999889999999999999999988887654333
No 221
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=362.74 Aligned_cols=217 Identities=24% Similarity=0.454 Sum_probs=187.0
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l 1286 (1467)
|.|+++||+++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999963 3599999999999999999999999999999999999863 69999999999975 456
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|++++++||+|.+|+.|+++|+... +.. .++++.++++.+++.+.+.. .......+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 6789999999999999999999999521 111 23456677788877544332 22334568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|++|+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668899999999998876 999999999999999999998
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 76
No 222
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-38 Score=370.98 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC----CCHH
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~----i~l~ 1287 (1467)
.|+++|++++|+... .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 459999999999999999999999999999999999999999999999999963 3466
Q ss_pred HHhhccEEeccCC--cccccchHHhcCCC--C-CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~--~-~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..|++++|+||+| .+|+.|+++|+... . ..++ +.+.++++.+++.+.+. + ....+||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~----~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------A----RSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------h----CCcccCCHHHH
Confidence 7889999999998 68889999999411 1 1233 24566778888753221 2 22357999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987643 7899999999999865 9999999999999999999
Q ss_pred HHhcc
Q 000481 1436 KLMET 1440 (1467)
Q Consensus 1436 ~Ll~~ 1440 (1467)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98753
No 223
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-38 Score=356.48 Aligned_cols=211 Identities=20% Similarity=0.357 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH----HHHhh
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRV 1291 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l----~~LR~ 1291 (1467)
+.+.|+.++|+++ .++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578899999755 469999999999999999999999999999999999999999999999999876543 34678
Q ss_pred ccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
.++|+||+|.+|+.|+++|+.....+++++.+++++.+++.+.+..+|.|+++.+.....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999754445667788899999999999989999999998888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1372 RILVLDEANASIDSATDAILQR--IIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~--~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
++|||||||++||..+.+.+.+ .++... .+.|+|+++|+.+.+..||+|++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999998777666 444322 3689999999999999999999999984
No 224
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=363.98 Aligned_cols=221 Identities=23% Similarity=0.425 Sum_probs=190.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3889999999963 359999999999999999999999999999999999875 389999999999976 3466
Q ss_pred HHhhccEEeccCCcccccchHHhcCC-C---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP-L---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp-~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+.. + +..+ ++++.++++.+++.+++..+ + ...+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L----DKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H----hCCcccCCHHHHH
Confidence 78999999999999999999999962 1 1112 23467788899987765432 2 3445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|+|||||++++|+||+|||||++||..+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987778999999999999877 8999999999999999999997
Q ss_pred c-cCChh
Q 000481 1439 E-TNSSF 1444 (1467)
Q Consensus 1439 ~-~~~~f 1444 (1467)
. +.+.+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 6 44444
No 225
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=362.88 Aligned_cols=216 Identities=27% Similarity=0.475 Sum_probs=187.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5999999999953 45999999999999999999999999999999999999997 6999999999875 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|++|+++|+... +... ++.+.++++..++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 789999999999999999999999521 1111 2345566777777654432 234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887567999999999999987 7999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 235 ~ 235 (251)
T PRK14249 235 S 235 (251)
T ss_pred h
Confidence 6
No 226
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=367.41 Aligned_cols=216 Identities=23% Similarity=0.421 Sum_probs=187.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 49999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCCc-cc-ccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEPT-LF-RGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp~-LF-~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++||+|. +| ..|+++|+... .... ++++.++++..++.++... ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 44 55889998421 1112 3456778888887654332 23579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
|++++|++|||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+..||||++|++|++++.|+++++.+..
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999987643 78999999999999889999999999999999999987743
No 227
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-38 Score=381.28 Aligned_cols=213 Identities=24% Similarity=0.426 Sum_probs=190.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++..++|++|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcc-cccchHHhcCCC--------C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTL-FRGSVRTNLDPL--------G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~L-F~gTIR~NLdp~--------~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++||++.+ |+.|+++|+... + ...++.+.++++.+++.++... . ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-------~----~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-------P----VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHHH
Confidence 99999987 677999998521 1 1123468899999999776543 2 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||||+++|+||+|||||++||..+...+.+.|++.. ++.|+|+++|+++.+.. ||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999764 47899999999999954 999999999999999999998863
No 228
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=366.24 Aligned_cols=216 Identities=24% Similarity=0.469 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 459999999999999999999999999999999999865 789999999999975 3445
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+... +.. .++.+.++++..++.+.+.. .......+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678999999999999999999998521 111 13456778888877533221 123345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998865 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 252 ~ 252 (268)
T PRK14248 252 T 252 (268)
T ss_pred h
Confidence 6
No 229
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=368.12 Aligned_cols=216 Identities=22% Similarity=0.383 Sum_probs=189.0
Q ss_pred eEEEEEEEEEeCCC----CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-HHHH
Q 000481 1215 RIELRQLKIRYRPN----APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-LKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~----~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~-l~~L 1289 (1467)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999998654 4567
Q ss_pred hhccEEeccCCc--ccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 RVKLSIIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R~~i~iIpQdp~--LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|++++++||+|. +|..|+++|+.... ..+ ++++.++++.+++.++....| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67678999985211 112 356788899999987765544 3689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
++||||++++|++|||||||++||..+...+.+.|++.. .++|||+|+|+++.+..||+|++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998764 378999999999999889999999999999999999997
Q ss_pred ccC
Q 000481 1439 ETN 1441 (1467)
Q Consensus 1439 ~~~ 1441 (1467)
+..
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 643
No 230
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-39 Score=354.19 Aligned_cols=202 Identities=28% Similarity=0.483 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++|+|+++ .++|+|+|++|++|+.++|+|+||||||||++++.|+++|++|+|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 5899999999999999999999999999999999999999999998866 3
Q ss_pred EEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
+|||+|+| .++..||.|.+.||.. ..+ ++.+++++.|++.+..+. ...+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHh
Confidence 99999999 5789999999999953 333 457778888888876553 456999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|.+|..+|+++|||||||+||+...+.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999998766555555 6899999999999876 999999999999999999888754
No 231
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-36 Score=332.81 Aligned_cols=505 Identities=15% Similarity=0.140 Sum_probs=335.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
-.++|.+++.++....+.+.....+. .++..+-++..+.+......+.+.+++.+..++.+... ......+|..
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is---~lg~t~~gq~ 78 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLIS---QLGLTTLGQH 78 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45678888887766655554444332 22222223322211111111112222222222222211 1223344555
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
.-..++..+-+|.+.-|....++.+++.++..++.|+..|.-....+..+..+.+-++.+...|+.+-+...+..++.++
T Consensus 79 ~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~iv 158 (546)
T COG4615 79 FIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIV 158 (546)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555566778888888888888899999999999999998666666666666666677777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHH-H
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKS-LIESRREKEFKWLSEAQLRKAYG-T 504 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~--~f~~-~i~~~R~~E~~~l~~~~~~~~~~-~ 504 (1467)
+....+....++..+...+..+.-|+-.+..+.++.|-|..|+..--. .+.+ .+...++.+- ...+...+. .
T Consensus 159 v~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~l 234 (546)
T COG4615 159 VTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHHH
Confidence 777777777778888888888889999999999999999999865321 1111 1111222111 111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 000481 505 VIYWMSPTIISSVIFLGCALT-GSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~-~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 583 (1467)
...|..-.+.++ +-..+++. .-+--+...+.|....+--++.|+.+....+..+.+|.++++||.++-..|+...-..
T Consensus 235 a~~~~ni~l~~l-IGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 235 AVNWSNIMLLGL-IGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 122222111111 11111111 1112223345555555666899999999999999999999999999754433221111
Q ss_pred ccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 000481 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---- 659 (1467)
Q Consensus 584 ~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---- 659 (1467)
..+ .++-..++++|+.|+|++. ..-+..||++|++||++-|+|.|||||||+++++.|++.|++|+|.++|+
T Consensus 314 -~q~-~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 314 -PQA-FPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred -CCc-CCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 111 1123579999999999864 37899999999999999999999999999999999999999999999984
Q ss_pred ---------EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 660 ---------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 660 ---------i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
++-|+-|-|+|+.++ -++. ..++.+++-++...+....+ +.+|.-+ ...||-|||.|+|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHH
Confidence 444555556554432 2222 45556666666555544332 3333322 2479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
+--|+..+.|||+|||=-+.-||+=++..++..+-. ...|||++.||||-.+...|||++.|++|++++.
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999998877644 4579999999999999999999999999999874
No 232
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.8e-38 Score=359.88 Aligned_cols=223 Identities=28% Similarity=0.402 Sum_probs=197.9
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.+.|+++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999643 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
.++|++|+|++++.|++||+........+++.++++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999876544566777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC-chHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TAFEQLV 816 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~-~~~~~~~ 816 (1467)
+++||||||++||+++.+.+++.+ ....+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.|.+++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVV-MTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHH-HHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 999999999999999988876544 4445689999999999999889999999999999999999987653 3344443
No 233
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.6e-38 Score=363.17 Aligned_cols=211 Identities=24% Similarity=0.435 Sum_probs=183.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC----------
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---------- 1285 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---------- 1285 (1467)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999963 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---HHHHhhccEEeccCCcccc-cchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1286 ---LKDLRVKLSIIPQEPTLFR-GSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1286 ---l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
...+|++++++||++.+|. +|+++|+... ... .++++.++++..++.+.....| ..|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP-----------AQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh-----------hhc
Confidence 2467899999999999885 7999999521 011 2345777888888766544433 469
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
|+|||||++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999965 99999999999999
Q ss_pred ecChhHHhc
Q 000481 1431 YDEPSKLME 1439 (1467)
Q Consensus 1431 ~g~p~~Ll~ 1439 (1467)
.|+++++.+
T Consensus 228 ~g~~~~~~~ 236 (252)
T TIGR03005 228 QGKPDEIFR 236 (252)
T ss_pred eCCHHHHhc
Confidence 999999986
No 234
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=373.54 Aligned_cols=224 Identities=17% Similarity=0.309 Sum_probs=184.7
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC----CCcceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE----PAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~----~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 389999999996432 359999999999999999999999999999999999997 48999999999999998777
Q ss_pred Hhh----ccEEeccCCc--ccc-cchHHh----cCCCCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1289 LRV----KLSIIPQEPT--LFR-GSVRTN----LDPLGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1289 LR~----~i~iIpQdp~--LF~-gTIR~N----Ldp~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
+|+ +|++|||||. ++. -|+.+| +...... .++++.++|+.+++.+.... ......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 654 6999999995 443 255544 3322111 23457888999998653211 12334579
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhc-ccCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE 1430 (1467)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .+.|+|+|||+++.+. -||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998764 3789999999999995 599999999999999
Q ss_pred ecChhHHhc-cCChhHH
Q 000481 1431 YDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1431 ~g~p~~Ll~-~~~~f~~ 1446 (1467)
.|+++++++ +...|.+
T Consensus 235 ~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred ECCHHHHhhCCCChHHH
Confidence 999999997 4444543
No 235
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9.3e-39 Score=360.85 Aligned_cols=211 Identities=27% Similarity=0.469 Sum_probs=180.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999953 359999999999999999999999999999999999999999999999999988776654 57899
Q ss_pred EeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
++||+|.+|.+ |+++|+... .... ++++.+.++..++.+. ......+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999521 1112 2234556666665433 233345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++++|++|||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998754 47899999999988766 99999999999999999999865
No 236
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.6e-39 Score=356.66 Aligned_cols=200 Identities=32% Similarity=0.458 Sum_probs=173.3
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999964324699999999999999999999999999999999999999999999999999988888899999999
Q ss_pred ccCCc--ccccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1297 PQEPT--LFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1297 pQdp~--LF~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
||+|. ++..|+++|+... ...+ ++++.++++..++.+..... ..+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 99983 6788999999531 1122 23466778888776554332 347999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998764 37899999999999987 99999999985
No 237
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.1e-38 Score=372.70 Aligned_cols=213 Identities=27% Similarity=0.428 Sum_probs=185.2
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++|++++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999963 46999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEeccCCcccc-cchHHhcCCCC---CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+|+||+|.+|. .|+++|+..++ ..++ +.+.++++.+++.+. .++++ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 59999996322 1232 235566777766543 44444 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||+.+|++|+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|+|+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999864 47899999999999976 999999999999999999999763
No 238
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=365.99 Aligned_cols=212 Identities=24% Similarity=0.415 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-HHHHhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-LKDLRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~-l~~LR~~i~ 1294 (1467)
++++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999533 45999999999999999999999999999999999999999999999999998775 467889999
Q ss_pred EeccCCc--ccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp~--LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++||+|. ++..|+++|+.... ..+ ++++.++++..++.+..... ...||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 56789999995321 122 34567778888876654432 3479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++++|+||||||||++||+.+...+.+.+++.. +++|+|+++|+++.+..||+|++|++|++++.|+++++..
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998754 4799999999999998899999999999999999999876
No 239
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=364.28 Aligned_cols=217 Identities=23% Similarity=0.411 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l 1286 (1467)
+.++++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999963 3599999999999999999999999999999999999985 48999999999864 455
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|++++++||+|.+|+.|+++|+... +... ++.+.++++.+++.+.+... + ...+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHHH
Confidence 6788999999999999999999999521 1112 23456788888886554322 2 334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe-----CCEEEEec
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS-----YGKLLEYD 1432 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~-----~G~ivE~g 1432 (1467)
||+|||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987677999999999999976 99999998 59999999
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
+++++.+
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14260 237 VTTQIFS 243 (259)
T ss_pred CHHHHhc
Confidence 9999976
No 240
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=366.08 Aligned_cols=219 Identities=24% Similarity=0.430 Sum_probs=190.1
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CC
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MG 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~ 1285 (1467)
.+.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999953 3599999999999999999999999999999999999884 89999999999975 44
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||++.+|.+|+++|+... +... ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56789999999999999999999999521 1111 2457788888888655432 2334566899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987678999999999999875 99999999999999999999
Q ss_pred Hhcc
Q 000481 1437 LMET 1440 (1467)
Q Consensus 1437 Ll~~ 1440 (1467)
+.+.
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 9863
No 241
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-38 Score=355.24 Aligned_cols=212 Identities=30% Similarity=0.500 Sum_probs=191.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5889999999963 24699999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
+|++|++++++.|++||+.++.+ ...++..+.++.+++.+.++.+|.|..+.++.+..+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999998754 34566777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALE-KLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999876554 44468999999999999988999999999999999998887643
No 242
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-38 Score=377.26 Aligned_cols=217 Identities=25% Similarity=0.419 Sum_probs=189.7
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCc--ceEEECCeeCCCCCHHHHh
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG--GSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~--G~I~IDG~dI~~i~l~~LR 1290 (1467)
.|.|+++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.+||.++.+.+.+ +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 478999999999963 359999999999999999999999999999999999999999 9999999999877653 5
Q ss_pred hccEEeccCCccccc-chHHhcC-CC--CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLD-PL--GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLd-p~--~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++|++++|++.+|.. |+++|+. +. ...+ ++.+.++++.+++.++....|. +||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA-----------QLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh-----------hCCHHHHHHHH
Confidence 789999999999976 9999995 21 1123 2356778888888877665553 68999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS---NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~---~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|||||+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999887543 6899999999999865 9999999999999999999998
Q ss_pred c-cCChh
Q 000481 1439 E-TNSSF 1444 (1467)
Q Consensus 1439 ~-~~~~f 1444 (1467)
+ +...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 7 44444
No 243
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=363.66 Aligned_cols=218 Identities=24% Similarity=0.423 Sum_probs=186.1
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CC
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~ 1285 (1467)
.--++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 336999999999963 359999999999999999999999999999999999987 699999999999853 45
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCC---CCCCC-----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDP---LGLYS-----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp---~~~~s-----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||+|.+|.+|+++|+.. ....+ ++.+.++++..++.+.+. ......+.+||+||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 6678899999999999999999999952 11222 223455666665543222 22344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++|||||+++|+||||||||++||..+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987778999999999999876 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 253 ~~~ 255 (271)
T PRK14238 253 IFS 255 (271)
T ss_pred HHc
Confidence 986
No 244
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-38 Score=355.79 Aligned_cols=217 Identities=32% Similarity=0.557 Sum_probs=192.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|+.+ .++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 4699999999999999999999999999999999999999999999877 289
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.+|.|.++.++.++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 344556677888889888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 814 (1467)
+||||||++||+++.+.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++......+..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 99999999999999998876554443 48999999999999988999999999999999999888765544433
No 245
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.1e-38 Score=353.87 Aligned_cols=202 Identities=24% Similarity=0.355 Sum_probs=178.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+. ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred eccCCccc-ccchHHhcCCC---CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1296 IPQEPTLF-RGSVRTNLDPL---GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1296 IpQdp~LF-~gTIR~NLdp~---~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
+||++.+| ..|+++|+... ...+++++.++++..++.+..... ...||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999888 46999998532 123567788899999987654432 3469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
++|+|||||++||..+.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998754 47899999999999976 9999999999999865
No 246
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=365.63 Aligned_cols=212 Identities=26% Similarity=0.393 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCCccccc-chHHhcCCC-C-------C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL-G-------L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~-~-------~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++||++.++.+ |+++|+... . . ..++++.++++.+++.+.....| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 999999521 0 0 12456788999999876544433 369999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998763 37899999999999965 99999999999999999999865
No 247
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2e-38 Score=355.43 Aligned_cols=203 Identities=27% Similarity=0.430 Sum_probs=174.3
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH---h
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---R 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L---R 1290 (1467)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 359999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -hccEEeccCCcccc-cchHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1291 -VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1291 -~~i~iIpQdp~LF~-gTIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
++++|+||+|.+|. .|+++|+.. ....+ ++++.++++..++.+..... ...||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 68999999999996 599999953 11122 23466777777775543332 346999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEE
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLL 1429 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~iv 1429 (1467)
+||||++++|+||||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999999889999999999986
No 248
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.6e-39 Score=356.97 Aligned_cols=200 Identities=23% Similarity=0.388 Sum_probs=175.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~~ 1292 (1467)
|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4699999999999999999999999999999999999999999999999999887643 46889
Q ss_pred cEEeccCCcccc-cchHHhcCCC----C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL----G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++++||+|.+|. .|+++|+... + ...+++++++++..++.+.....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999996 5999998521 1 112456788999998876554433 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
||++++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998753 47999999999999986 89999999985
No 249
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.4e-38 Score=342.22 Aligned_cols=172 Identities=34% Similarity=0.594 Sum_probs=162.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999997544469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.+|++|+++|+ ||+|||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1376 LDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
|||||++||..+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998764 47899999999999988999999999974
No 250
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=9.3e-39 Score=356.02 Aligned_cols=202 Identities=23% Similarity=0.394 Sum_probs=175.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. |+++++
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 579999999964 3599999999999999999999999999999999999999999999999999876543 578999
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999985 5999999532 1122 234667788888876544333 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|+|||||++||+++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999999876 9999999999999986
No 251
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=365.50 Aligned_cols=217 Identities=23% Similarity=0.442 Sum_probs=187.6
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l 1286 (1467)
..|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 36999999999963 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----C--CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----G--LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~--~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
..+|++++|+||+|.+|.+|+++|+... + ...+++++++++..++.+.+.. .......+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHHH
Confidence 6788999999999999999999999521 1 1124568888888887654432 1233456899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEE-EEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVM-VLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIl-Vl~~G~ivE~g~p~~Ll 1438 (1467)
++|||||+++|+||||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988777899999999999876 99975 57999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 6
No 252
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.6e-38 Score=363.71 Aligned_cols=220 Identities=25% Similarity=0.414 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCC-------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH
Q 000481 1216 IELRQLKIRYRPN-------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~-------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
|+++||+++|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998877643
Q ss_pred ---HhhccEEeccCCc--cc-ccchHHhcCC----CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1289 ---LRVKLSIIPQEPT--LF-RGSVRTNLDP----LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1289 ---LR~~i~iIpQdp~--LF-~gTIR~NLdp----~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
+|++++++||+|. ++ ..|+++|+.. .... .++++.++++..++.+.. + .....+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~----~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------A----DKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------h----hCChhhCC
Confidence 6788999999983 44 3699999841 1111 234567778887774221 1 22345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhccCChhH
Q 000481 1432 DEPSKLMETNSSFS 1445 (1467)
Q Consensus 1432 g~p~~Ll~~~~~f~ 1445 (1467)
|+++++++....|.
T Consensus 233 g~~~~~~~~~~~~~ 246 (265)
T TIGR02769 233 CDVAQLLSFKHPAG 246 (265)
T ss_pred CCHHHHcCCCCHHH
Confidence 99999988444333
No 253
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2e-38 Score=357.61 Aligned_cols=210 Identities=26% Similarity=0.427 Sum_probs=177.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-HhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i~ 1294 (1467)
|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 579999999963 35999999999999999999999999999999999999999999999999998887654 467899
Q ss_pred EeccCCccccc-chHHhcCCC-CC--CCHHH-HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL-GL--YSDDE-IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~-~~--~sd~e-i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++||++.+|.+ |+++|+... .. ..+++ ..++++..+. ++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999521 11 12222 2334444331 1222233445799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999987653 7899999999999986 999999999999999999987
No 254
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-38 Score=355.09 Aligned_cols=216 Identities=32% Similarity=0.544 Sum_probs=192.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
|+++|++++|+.. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999643 23699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++++++.|++||+.++.. ...+++.+.++.+.+.+.++.+|.|..+..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 445667777888888999999998888888999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
+||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++++.|+.+++....+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 230 (234)
T cd03251 160 LILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVY 230 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcch
Confidence 9999999999999999887654 4444689999999999999889999999999999999999887654443
No 255
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=379.64 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||++.+|.. |+++|+... ...+ ++++.++++..++.++....| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999521 1122 245778889888876654443 3689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++|||||||++||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+ +..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987643 7899999999998865 99999999999999999999987 444
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 33
No 256
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.4e-38 Score=376.71 Aligned_cols=216 Identities=24% Similarity=0.387 Sum_probs=189.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999953 3599999999999999999999999999999999999999999999999999887765 5789
Q ss_pred EEeccCCccccc-chHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++++|++.+|.. |+++|+.. .. ..+ ++++.++++..++.++....|. +||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----------~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh-----------hCCHHHHHHHHHHH
Confidence 999999999976 99999952 11 123 2356788999999887766653 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||||+||++|+|++.|+|+++++ +.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999987653 7899999999999765 99999999999999999999987 44
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
No 257
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-39 Score=368.57 Aligned_cols=215 Identities=25% Similarity=0.426 Sum_probs=192.4
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++||+.+|. ...+++|+|++|++||.+.++|||||||||++++|.||..|++|+|.+||.||+.++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 3699999999997 45699999999999999999999999999999999999999999999999999999987 5889
Q ss_pred EEeccCCccccc-chHHhcCCCC-----CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLG-----LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~-----~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
++|+|+..||+- ||++|+. |+ ...++ .+.++|+.+++.++-...|. .|||||+||+||
T Consensus 80 g~VFQ~YALFPHltV~~NVa-fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVAL 147 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVAL 147 (352)
T ss_pred ceeecCcccCCCCcHHHHhh-hhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHH
Confidence 999999999975 9999985 22 12333 67899999999998877775 579999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME- 1439 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~- 1439 (1467)
||||..+|++|+||||-|+||..-...+|.-+++.. .|.|.|.|||+-+.... +|||.||++|+|...|+|+|+..
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999988888887643 38899999999887654 99999999999999999999998
Q ss_pred cCChh
Q 000481 1440 TNSSF 1444 (1467)
Q Consensus 1440 ~~~~f 1444 (1467)
+...|
T Consensus 228 P~~~f 232 (352)
T COG3842 228 PATRF 232 (352)
T ss_pred cchHH
Confidence 55555
No 258
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=367.18 Aligned_cols=214 Identities=31% Similarity=0.462 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHH
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~ 1287 (1467)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 3599999999999999999999999999999999999999999999999999753 346
Q ss_pred HHhhccEEeccCC--cccccchHHhcCCC---CCCCH----HHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
..|++++++||+| .+|..|+++|+... ...+. +.+.++++.+++. +... ....+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-----------KSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-----------CCcccCCHHH
Confidence 6788999999998 57888999999410 11222 2356677777775 3322 2235799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
|||++||||++++|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998764 47899999999999864 9999999999999999999
Q ss_pred HHhc
Q 000481 1436 KLME 1439 (1467)
Q Consensus 1436 ~Ll~ 1439 (1467)
++++
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 9875
No 259
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.1e-38 Score=360.70 Aligned_cols=211 Identities=25% Similarity=0.388 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC--------HH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--------LK 1287 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~--------l~ 1287 (1467)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999987542 35
Q ss_pred HHhhccEEeccCCcccc-cchHHhcCC----CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFR-GSVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~-gTIR~NLdp----~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++++++||+|.+|. .|+++|+.. ..... ++.+.++++..++.+.. .....+||+|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq~ 150 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQQ 150 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHHH
Confidence 67889999999999886 699999952 11122 23456667777665432 223467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
||++||||++++|++|||||||++||..+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998764 37899999999999976 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 231 ~~~ 233 (250)
T PRK11264 231 LFA 233 (250)
T ss_pred Hhc
Confidence 876
No 260
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=337.75 Aligned_cols=200 Identities=30% Similarity=0.443 Sum_probs=172.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.|+++|++..|+. ++.+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999974 46899999999999999999999999999999999999999999999887
Q ss_pred -eEEEEccCCcCC-CCCHHHHHhcCCC------------CCHHHHH---HHHHHhcchHHHhcCCCCCCccccCCCCccC
Q 000481 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP------------MDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1467)
Q Consensus 659 -~i~yv~Q~~~l~-~~ti~eNi~~g~~------------~~~~~~~---~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 721 (1467)
+|||++|++.|. ..|+.+|++.|+- +.++... ++++..++.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 499999998764 5699999998742 2333333 3444445444332 4677999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEe
Q 000481 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1467)
Q Consensus 722 GGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1467)
|||+|||+|||||+++|+|+|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|+++...+ ||||+-|++|+|++.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999998766543 468999999999999865 999999999999999
Q ss_pred cChHHHH
Q 000481 800 GNYQELL 806 (1467)
Q Consensus 800 G~~~~l~ 806 (1467)
|+.+|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999864
No 261
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-38 Score=358.65 Aligned_cols=212 Identities=24% Similarity=0.371 Sum_probs=179.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
-|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999953 45999999999999999999999999999999999999999999999999999887654 67889
Q ss_pred EEeccCCccccc-chHHhcCCCCC-CCH----HHHHHHHHHc-CCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLGL-YSD----DEIWKALEKC-QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~~-~sd----~ei~~aL~~~-~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+++||++.+|.+ |+++|+..... .+. +++.++++.. ++.+. .+ .....||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-------~~----~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-------RI----QRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-------Hh----CchhhCCHHHHHHHHHHHH
Confidence 999999999985 99999953111 122 2233334433 12211 12 2345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++++|+||||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998754 48999999999998765 99999999999999999999975
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=363.78 Aligned_cols=220 Identities=23% Similarity=0.406 Sum_probs=190.7
Q ss_pred CCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCC---
Q 000481 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDIC--- 1282 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~--- 1282 (1467)
|..+.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 56788999999999963 3599999999999999999999999999999999999875 7999999998874
Q ss_pred -CCCHHHHhhccEEeccCCcccccchHHhcCCC----C----CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1283 -SMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL----G----LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1283 -~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~----~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
....+.+|++++|+||+|.+|.+|+++|+... + ...++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 33456789999999999999999999999521 1 112466788888888764332 2233445689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|+|||||++||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999975 9999999999999999
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
+++++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9999875
No 263
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=359.65 Aligned_cols=212 Identities=26% Similarity=0.394 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC------CCCHHHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC------SMGLKDL 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~------~i~l~~L 1289 (1467)
++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++ ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999953 35999999999999999999999999999999999999999999999999984 1234567
Q ss_pred hhccEEeccCCccccc-chHHhcC--CCC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLD--PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLd--p~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|++++|+||+|.+|.+ |+++|+. +.. ..+ .+++.++++..++.++....| .+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHH
Confidence 8999999999999976 9999995 111 112 234566777777765544333 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
++||||++++|+||||||||++||.++...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999998764 47999999999999975 9999999999999999999876
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
++
T Consensus 230 ~~ 231 (242)
T PRK11124 230 QP 231 (242)
T ss_pred Cc
Confidence 53
No 264
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=361.14 Aligned_cols=216 Identities=23% Similarity=0.423 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 4599999999999999999999999999999999999875 799999999999753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|..|+++|+... +..+ ++++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 778999999999999999999999521 1112 23466788888876543321 22345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987767899999999999876 9999999999999999999997
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 235 ~ 235 (251)
T PRK14270 235 L 235 (251)
T ss_pred c
Confidence 6
No 265
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-38 Score=358.94 Aligned_cols=211 Identities=21% Similarity=0.365 Sum_probs=182.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC--CHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM--GLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i--~l~~LR~~i 1293 (1467)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999953 4599999999999999999999999999999999999999999999999999864 345678899
Q ss_pred EEeccCCcccc-cchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||++.+|. .|+++|+... ...+ ++++.++++..++.+.... ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999999886 5999999521 1112 2345667777776554333 2357999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||++++|++|+|||||++||.++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999999998754 47899999999999865 99999999999999999999876
No 266
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-38 Score=362.11 Aligned_cols=216 Identities=21% Similarity=0.432 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4999999999963 359999999999999999999999999999999999986 479999999999853 4566
Q ss_pred HHhhccEEeccCCcccccchHHhcCCCC---CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
.+|++++++||+|.+|+.|+++|+.... .. .++++.++++.+++.+.+... ....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7899999999999999899999995321 11 134566678888886654321 2344568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe---------CCEEEEe
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS---------YGKLLEY 1431 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~---------~G~ivE~ 1431 (1467)
+||||++++|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987767899999999999865 89999998 8999999
Q ss_pred cChhHHhc
Q 000481 1432 DEPSKLME 1439 (1467)
Q Consensus 1432 g~p~~Ll~ 1439 (1467)
|+++++.+
T Consensus 241 ~~~~~~~~ 248 (264)
T PRK14243 241 DRTEKIFN 248 (264)
T ss_pred CCHHHHHh
Confidence 99999986
No 267
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=365.15 Aligned_cols=213 Identities=26% Similarity=0.409 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC--CCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS--MGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~--i~l~~LR~~i 1293 (1467)
|+++|++++|+. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++|
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 789999999963 3459999999999999999999999999999999999999999999999999863 3345688999
Q ss_pred EEeccCC--cccccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+|+||+| .+|..|+++|+... ...+ .+++.++++.+++.++... . ..+||+|||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------P----PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------C----hhhCCHHHHHHHHHH
Confidence 9999998 57889999999511 0122 2456778888888654332 2 246999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||++++|++|||||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 37899999999999975 999999999999999999998763
No 268
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=357.84 Aligned_cols=209 Identities=27% Similarity=0.405 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++++|+||+|+|||++||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 579999999964 359999999999999999999999999999999999999999999999999987664 3688999
Q ss_pred eccCCccccc-chHHhcCC-C---C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP-L---G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp-~---~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. + + ...++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 99999852 1 1 112456778888888877765544 37899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++|||||||+++|..+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999999987643 7999999999999876 89999999999999999999876
No 269
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=364.32 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=188.2
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 36999999999963 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEeccCCcccc-cchHHhcCCCC--------CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPLG--------LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~~--------~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
+|+||++.+|. .|+++|+.... .. .++.++++++..++.+.... ...+||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999999875 59999996321 01 23467888888888765433 2357999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+||||++++|++|||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987643 7899999999998866 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
No 270
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.9e-38 Score=372.03 Aligned_cols=224 Identities=23% Similarity=0.404 Sum_probs=185.0
Q ss_pred eEEEEEEEEEeCC--CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---cceEEECCeeCCCCCHHHH
Q 000481 1215 RIELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA---GGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~--~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~---~G~I~IDG~dI~~i~l~~L 1289 (1467)
-++++|++++|+. +...+++||||+|++||.+||||+||||||||+++|.|+++|. +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999953 2245999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----hccEEeccCC--cccc-cchHHhc----CCCCCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1290 R----VKLSIIPQEP--TLFR-GSVRTNL----DPLGLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1290 R----~~i~iIpQdp--~LF~-gTIR~NL----dp~~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
| ++|++||||| .++. -|+.+|+ ...+..+. +.+.+.|+.+++.+ +.+ .+.....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------ARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hHH-HhcCCcccCC
Confidence 4 4799999999 4554 3777765 22222232 34556677776632 111 1344556899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhc-cCChhHH
Q 000481 1432 DEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1432 g~p~~Ll~-~~~~f~~ 1446 (1467)
|+++++++ +...|.+
T Consensus 244 g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 244 GNARDVFYQPSHPYSI 259 (330)
T ss_pred CCHHHHHhCCCCHHHH
Confidence 99999997 4444544
No 271
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=362.23 Aligned_cols=211 Identities=24% Similarity=0.422 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..++|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999953 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eccCCccccc-chHHhcCCC--------CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1296 IPQEPTLFRG-SVRTNLDPL--------GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~--------~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
+||++.+|.+ |+++|++.. +.. .++++.++++..++.+..... ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence 9999999877 999999632 111 234577888888886554332 34699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||++++|++|||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998754 47899999999999875 99999999999999999999875
No 272
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-38 Score=360.16 Aligned_cols=216 Identities=26% Similarity=0.431 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
-|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+.++ ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4999999999953 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
..|++++++||+|.+|++|+++|+... +... ++.+.++++.+++.+.+. +.....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 788999999999999999999999631 1111 335667777777754432 2234456689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++.+|+++||||||++||.++.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999975 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 237 ~ 237 (253)
T PRK14261 237 E 237 (253)
T ss_pred h
Confidence 6
No 273
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=359.22 Aligned_cols=203 Identities=27% Similarity=0.359 Sum_probs=178.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999963 35999999999999999999999999999999999999999999999998763 5688999
Q ss_pred EeccCCcccc-cchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
|+||+|.+|. .|+++|+... ....++++.++++..++.+.... ...+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 6999999632 12235678888999888765433 235799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
+|||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998753 37899999999999865 9999999999999988754
No 274
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.6e-38 Score=354.39 Aligned_cols=201 Identities=26% Similarity=0.391 Sum_probs=174.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR~~ 1292 (1467)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 5789999999643 459999999999999999999999999999999999999999999999999987754 357889
Q ss_pred cEEeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++++||+|.+|.+ |+++|+... ...+ ++++.++++..++.+.....| .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999521 1112 345778888888866544332 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
||++++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 47999999999999986 899999999974
No 275
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=364.74 Aligned_cols=213 Identities=27% Similarity=0.410 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC--CCCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~--~i~l~~LR~~i 1293 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999953 45999999999999999999999999999999999999999999999999985 34456788999
Q ss_pred EEeccCCc--ccccchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPT--LFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~--LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||+|. +|..|+.+|+... ...++ +++.++++..++.++.. . ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-------Q----PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-------C----CchhCCHHHHHHHHHH
Confidence 99999986 5778999998521 11222 34567788888765432 2 2357999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccC
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
|||+.+|+||||||||++||..+...+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999999999998754 47899999999999965 9999999999999999999987643
No 276
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-38 Score=362.10 Aligned_cols=217 Identities=27% Similarity=0.414 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCCC-HHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSMG-LKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i~-l~~ 1288 (1467)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhhccEEeccCCcccccchHHhcCCC----CCCCHHHH----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLYSDDEI----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sd~ei----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+|++++|+||+|.+|..|+++|+... ...+++++ .++++.+++.+.. ++.......+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHHH
Confidence 78999999999999999999999521 12344443 3456666665432 122344567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++||||++++|++|||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999987
Q ss_pred c
Q 000481 1440 T 1440 (1467)
Q Consensus 1440 ~ 1440 (1467)
.
T Consensus 252 ~ 252 (276)
T PRK14271 252 S 252 (276)
T ss_pred C
Confidence 3
No 277
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=377.68 Aligned_cols=198 Identities=27% Similarity=0.431 Sum_probs=175.9
Q ss_pred cceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH----hhccEEeccCCccccc-
Q 000481 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL----RVKLSIIPQEPTLFRG- 1305 (1467)
Q Consensus 1231 ~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g- 1305 (1467)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998887654 3589999999999975
Q ss_pred chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000481 1306 SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378 (1467)
Q Consensus 1306 TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDE 1378 (1467)
|+++|+... ...+ ++++.++++.+++.++....| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999521 1122 346778899999877665544 3689999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1379 ANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1379 aTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||++||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+|+++++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999998763 47899999999999865 99999999999999999999987
No 278
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=365.75 Aligned_cols=215 Identities=27% Similarity=0.408 Sum_probs=182.5
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHHH
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~~ 1288 (1467)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999999764 3567
Q ss_pred HhhccEEeccCC--cccccchHHhcCCC---CCCCHHH----HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPL---GLYSDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1289 LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
+|++|+|+||+| .+|++|+++|+... ...++++ +.++++..++.+.. + .....+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL------F----EKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh------h----hCCcccCCHHHHH
Confidence 889999999998 68889999999521 1123332 44566666664211 1 2234579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
|++||||++++|++|||||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998754 37899999999999865 999999999999999999998
Q ss_pred hcc
Q 000481 1438 MET 1440 (1467)
Q Consensus 1438 l~~ 1440 (1467)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 763
No 279
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.1e-38 Score=350.11 Aligned_cols=206 Identities=28% Similarity=0.439 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48899999999743 35799999999999999999999999999999999999999999998876 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
+|++|++.+++.|++||+.+......++..++++..++.+.+..+|.|.++..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766667778888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecC
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1467)
+||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999887654 44445789999999999998899999999999998775
No 280
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.6e-38 Score=356.73 Aligned_cols=209 Identities=26% Similarity=0.388 Sum_probs=183.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .|+.+++
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 579999999963 359999999999999999999999999999999999999999999999999987653 4789999
Q ss_pred eccCCccccc-chHHhcCCCC---CC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLG---LY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~---~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+..... ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999995211 11 234567788888876554432 247999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++++|||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|+++|.|+++++++
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999999987543 7999999999999876 99999999999999999999976
No 281
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-38 Score=355.07 Aligned_cols=203 Identities=27% Similarity=0.364 Sum_probs=175.7
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. +|+++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999873 46789
Q ss_pred EEeccCCcccc-cchHHhcCCC---CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++||+|.+|. .|+++|+... ... .++++.++++..++.+.....| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999997 6999998521 111 2356778888888876554433 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEe--CCEEEEecCh
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLS--YGKLLEYDEP 1434 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~--~G~ivE~g~p 1434 (1467)
|++++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998763 37899999999998865 99999999 7999998763
No 282
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-38 Score=359.36 Aligned_cols=216 Identities=21% Similarity=0.324 Sum_probs=188.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.+.+++.+++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999953 3599999999999999999999999999999999999986 799999999999753 445
Q ss_pred HHhhccEEeccCCcccccchHHhcCCCCC------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPLGL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
.+|++++++||+|.+|..|+++|+..... ..++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999963211 1235678899999887655432 2345678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe--------CCEEEEec
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS--------YGKLLEYD 1432 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~--------~G~ivE~g 1432 (1467)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987678899999999999876 99999996 89999999
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
+++++++
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14263 239 PTAQIFQ 245 (261)
T ss_pred CHHHHHh
Confidence 9999987
No 283
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=360.44 Aligned_cols=217 Identities=25% Similarity=0.426 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~--i~l 1286 (1467)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999953 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|+.++++||++.+|..|+++|+... +..+ ++.+.++++.+++.+++..+ ......+||+|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788999999999999999999999521 1112 23467788888887655432 2344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeC-----CEEEE
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSY-----GKLLE 1430 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~-----G~ivE 1430 (1467)
||++||||++++|++|||||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998742 48999999999999875 899999999 99999
Q ss_pred ecChhHHhc
Q 000481 1431 YDEPSKLME 1439 (1467)
Q Consensus 1431 ~g~p~~Ll~ 1439 (1467)
.|+|+++.+
T Consensus 237 ~~~~~~~~~ 245 (261)
T PRK14258 237 FGLTKKIFN 245 (261)
T ss_pred eCCHHHHHh
Confidence 999999986
No 284
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-38 Score=361.19 Aligned_cols=217 Identities=21% Similarity=0.389 Sum_probs=187.3
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l 1286 (1467)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999963 3599999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCCC---CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
..+|++++|+||+|.+|.+|+++|+.... .. .++++.++++.+++.+.+... + ......||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---L----KEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---h----cCCcccCCHHHHHH
Confidence 56789999999999999999999995311 11 244567788888886554321 2 23456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe---------CCEEEE
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS---------YGKLLE 1430 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~---------~G~ivE 1430 (1467)
++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987778999999999999965 99999998 899999
Q ss_pred ecChhHHhc
Q 000481 1431 YDEPSKLME 1439 (1467)
Q Consensus 1431 ~g~p~~Ll~ 1439 (1467)
.|+++++.+
T Consensus 250 ~g~~~~~~~ 258 (274)
T PRK14265 250 FSPTEQMFG 258 (274)
T ss_pred eCCHHHHHh
Confidence 999999986
No 285
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-38 Score=358.31 Aligned_cols=216 Identities=23% Similarity=0.414 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCC-CCCHHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDIC-SMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~-~i~l~~ 1288 (1467)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 4599999999999999999999999999999999999986 5999999999986 456678
Q ss_pred HhhccEEeccCCcccccchHHhcCCC---CCC-C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL---GLY-S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+|+.++|+||+|.+|.+|+++|+... ... . ++++.++++.+++.+.+. ........+||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 89999999999999999999999521 111 1 234566777777765432 12233456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987677999999999999887 99999999999999999999875
No 286
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-38 Score=366.66 Aligned_cols=216 Identities=23% Similarity=0.333 Sum_probs=181.5
Q ss_pred cceEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC----C-
Q 000481 1213 KGRIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----M- 1284 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~----i- 1284 (1467)
.|.|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47899999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHHhhccEEeccCC--cccccchHHhcCCC---CCCCHH----HHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCC
Q 000481 1285 GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1285 ~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd~----ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
+...+|++++|+||+| .+|.+|+++|+... ...+.+ .+.++++..++. +. ......+||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-----------VKRSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-----------hcCChhhCC
Confidence 4567889999999998 47888999999521 112332 234455555552 22 123345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
+|||||++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998764 37899999999998865 999999999999999
Q ss_pred cChhHHhc
Q 000481 1432 DEPSKLME 1439 (1467)
Q Consensus 1432 g~p~~Ll~ 1439 (1467)
|+++++++
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 99998875
No 287
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.9e-38 Score=353.37 Aligned_cols=197 Identities=27% Similarity=0.400 Sum_probs=169.4
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999953 35999999999999999999999999999999999999999999999998874 578899999
Q ss_pred ccCCcc---cccchHHhcCCCCC-----------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1297 PQEPTL---FRGSVRTNLDPLGL-----------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1297 pQdp~L---F~gTIR~NLdp~~~-----------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
||+|.+ |..|+++|+..... ..++++.++++..++.+..... ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999986 66899999852111 1234678889998887654432 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998754 57899999999999976 8999999986 55544
No 288
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.5e-38 Score=322.95 Aligned_cols=193 Identities=24% Similarity=0.399 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
|+|+||+..|+.+ .++|+||||+|++||++-|+||||||||||+++|.++..|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 6799999999999999999999999999999999999999999999877
Q ss_pred eEEEEccCCcC-CCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l-~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
+||+|+|+.-| ..-||.||+.|... .. ++++.++++..+|.+....+|. .|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 59999999875 56699999999643 12 3567778999999998888885 799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcC-CEEEEEeCCeEeEec
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~G 800 (1467)
|||+..+|++||-||||-+|||..+..|++........|.||+++||+.+.+... -+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999876555567899999999999999886 789999999998654
No 289
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.7e-38 Score=370.87 Aligned_cols=203 Identities=25% Similarity=0.350 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
|+++|++++|+.++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 24799999999999999999999999999999999999999999998876
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
+|+|++|++.++. .|++|||.++.. .+. ++..++++..++.+..+ ..+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 3899999998875 799999998632 222 33455566666654333 456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|||||+.+|+++|||||||+||+.+.+.+.+.+.+... .|.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999998865554433 38999999999999876 99999999999999999999876
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 290
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-38 Score=349.65 Aligned_cols=200 Identities=28% Similarity=0.425 Sum_probs=175.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.. . .|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5799999999632 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred eccCCccccc-chHHhcCCC-C---C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPL-G---L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~-~---~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+... . . ..++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999621 1 1 13456888999999877655544 36899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998764 37899999999999976 9999999999998865
No 291
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-38 Score=355.30 Aligned_cols=208 Identities=25% Similarity=0.427 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. + +|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 3 8999999999999999999999999999999999999999999999999987655 3789999
Q ss_pred eccCCcccc-cchHHhcCC---CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp---~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||++.+|. .|+++|+.. .... .++++.++++.+++.+++...+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 699999952 1111 2345778899998877655443 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++|+|||||++||..+.+.+.+.+++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999997543 7999999999999876 99999999999999999999876
No 292
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7.1e-38 Score=352.61 Aligned_cols=206 Identities=24% Similarity=0.329 Sum_probs=178.9
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---H
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---L 1289 (1467)
-|+++|++++|+.+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999996532 25999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hhccEEeccCCccccc-chHHhcCC---CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 -RVKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 -R~~i~iIpQdp~LF~g-TIR~NLdp---~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+++++++||+|.+|.+ |+++|+.. +... .++++.++++..++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999885 99999852 1111 2346778889988876655443 3689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEe
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~ 1431 (1467)
++|||||+++|++|||||||++||.++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998753 27899999999999988999999999999874
No 293
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-38 Score=359.98 Aligned_cols=216 Identities=25% Similarity=0.469 Sum_probs=184.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999864 4456
Q ss_pred HHhhccEEeccCCcccc-cchHHhcCC-C---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFR-GSVRTNLDP-L---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~-gTIR~NLdp-~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|+.++++||++.+|. .|+++|+.. . +..+ ++.+.++++.+++.+.+.. .......+||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 78899999999999997 499999842 1 1112 3456677888887544321 12334467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe------CCEEEEe
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS------YGKLLEY 1431 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~------~G~ivE~ 1431 (1467)
||++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999865 99999997 8999999
Q ss_pred cChhHHhc
Q 000481 1432 DEPSKLME 1439 (1467)
Q Consensus 1432 g~p~~Ll~ 1439 (1467)
|+|+++++
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 99999976
No 294
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-38 Score=371.60 Aligned_cols=203 Identities=31% Similarity=0.448 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4889999999942 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.+|. .||+|||.|+.. .+ .++.+++++.+++.+..+. ...+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-----------KPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999885 699999999753 22 2345667777777655543 4568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+.+|+++|||||||+||+.+.+.+.+.+.+...+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999988766544333 8999999999998764 9999999999999999999997653
No 295
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=357.21 Aligned_cols=211 Identities=27% Similarity=0.396 Sum_probs=185.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+++++++
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999963 459999999999999999999999999999999999999999999999999998888888899999
Q ss_pred eccCCcc-cccchHHhcCCCC----C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTL-FRGSVRTNLDPLG----L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~L-F~gTIR~NLdp~~----~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||++.+ +..|+++|+.... . ..++.+.++++..++.+..... ...||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999987 6779999985311 1 1234577888888886544332 347999999999999999
Q ss_pred c------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1368 L------KRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1368 L------r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+ ++|++|||||||++||+.+.+.+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998764 47899999999999874 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 6
No 296
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-38 Score=365.93 Aligned_cols=218 Identities=26% Similarity=0.488 Sum_probs=188.4
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCCC--C
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICSM--G 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~i--~ 1285 (1467)
+..|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 447999999999964 359999999999999999999999999999999999986 6899999999999753 4
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC-C---------------C----CCHHHHHHHHHHcCCchHHhhCCCCcccc
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL-G---------------L----YSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~---------------~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~ 1345 (1467)
...+|++++|+||++.+|.+|+++|+... . . ..++++.++++.+++.+.+. +.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 66788999999999999999999999521 0 0 11345777888887754432 23
Q ss_pred cccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEE-EEE
Q 000481 1346 VSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMV-MVL 1423 (1467)
Q Consensus 1346 v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrI-lVl 1423 (1467)
......+||||||||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|+|+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34556789999999999999999999999999999999999999999999988777899999999999876 9997 578
Q ss_pred eCCEEEEecChhHHhc
Q 000481 1424 SYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1424 ~~G~ivE~g~p~~Ll~ 1439 (1467)
++|++++.|+++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 9999999999999876
No 297
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-38 Score=334.26 Aligned_cols=205 Identities=25% Similarity=0.408 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
.++++|+++.|+... ..++|+||||+|.+||.++|+|+||||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999997532 12599999999999999999999999999999999999999999999988
Q ss_pred eEEEEccCCcC---CCCCHHHHHhcCC-----CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWI---QSGSIRDNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l---~~~ti~eNi~~g~-----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.|-+|+|+|.- +.-||++-|.=+. +-.+++..++++..+|.+.... .+...|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~----------R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh----------cCchhcChhHHHHHHH
Confidence 38999999863 3458888776432 2234567888888888765432 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||||..+|+++|||||||+||+.+...|++.+.... ..+-|.|+|||++..+.+ ||||+||++|+|+|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999987655443 246799999999999987 999999999999999999998866
No 298
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1e-37 Score=349.86 Aligned_cols=203 Identities=24% Similarity=0.369 Sum_probs=174.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR~~ 1292 (1467)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 46999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred cEEeccCCccc-ccchHHhcCCC---CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLF-RGSVRTNLDPL---GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF-~gTIR~NLdp~---~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++|+||+|.+| ..|+++|+... ...+++ ++.++++..++.+..... ..+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999874 67999999521 122332 456778888876654332 247999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
||++++|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998753 47899999999999976 89999999999853
No 299
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-38 Score=358.85 Aligned_cols=212 Identities=25% Similarity=0.394 Sum_probs=180.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i 1293 (1467)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5999999999953 469999999999999999999999999999999999999999999999999998876664 4569
Q ss_pred EEeccCCccccc-chHHhcCCCCC----------------C--C----HHHHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLGL----------------Y--S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~~----------------~--s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
+++||+|.+|.+ |+++|+..... . . .+.+.++++..++.+. .....
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCCh
Confidence 999999999986 99999863100 0 0 1234445555555432 33445
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1351 ~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
.+||+|||||++||||++++|++|||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 67999999999999999999999999999999999999999999987543 7899999999999976 99999999999
Q ss_pred EEEecChhHHhc
Q 000481 1428 LLEYDEPSKLME 1439 (1467)
Q Consensus 1428 ivE~g~p~~Ll~ 1439 (1467)
+++.|+++++.+
T Consensus 232 i~~~~~~~~~~~ 243 (255)
T PRK11300 232 PLANGTPEEIRN 243 (255)
T ss_pred EEecCCHHHHhh
Confidence 999999999865
No 300
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=8.5e-38 Score=352.15 Aligned_cols=207 Identities=25% Similarity=0.441 Sum_probs=172.3
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHh
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR 1290 (1467)
|+++||+++|.... +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999995431 269999999999999999999999999999999999999999999999999988773 5778
Q ss_pred hccEEeccCC--ccc-ccchHHhcCC----CCC-CCHHHH----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1291 VKLSIIPQEP--TLF-RGSVRTNLDP----LGL-YSDDEI----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1291 ~~i~iIpQdp--~LF-~gTIR~NLdp----~~~-~sd~ei----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
++++|+||+| .++ ..|+++|+.. .+. ..+++. .++++..++.+ ........+||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 4699999841 111 112211 24556655531 112233457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999987654 7899999999999984 9999999999998865
No 301
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-38 Score=358.10 Aligned_cols=221 Identities=26% Similarity=0.436 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~--i~l~ 1287 (1467)
-++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.+++. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999963 36999999999999999999999999999999999999874 8999999999975 3456
Q ss_pred HHhhccEEeccCCccccc-chHHhcCC-C---CCCCHHHH----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFRG-SVRTNLDP-L---GLYSDDEI----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~g-TIR~NLdp-~---~~~sd~ei----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++++|+||+|.+|.+ |+++|+.. . +...+++. .+.++..++.+.+ ++.++.+ ..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788999999999999985 99999952 1 11123333 3344555554332 2233433 457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+++|+++.+.+ ||||++|++|++++.|+|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999986 899999999999999999999
Q ss_pred hc-cCChh
Q 000481 1438 ME-TNSSF 1444 (1467)
Q Consensus 1438 l~-~~~~f 1444 (1467)
++ +...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87 33334
No 302
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-38 Score=354.88 Aligned_cols=212 Identities=26% Similarity=0.429 Sum_probs=180.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3899999999953 35999999999999999999999999999999999999999999999999998877644 57899
Q ss_pred EEeccCCccccc-chHHhcCCCC----CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLG----LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~----~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||+|.+|.+ |+++|+.... ..+. +.+.+.++..++.+. .......||+|||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999999885 9999996321 1122 234555555554332 2334467999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||++++|++|||||||++||..+.+.+.+.+++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+|+++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999988887653 47899999999987755 99999999999999999999876
No 303
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=365.69 Aligned_cols=207 Identities=23% Similarity=0.392 Sum_probs=173.0
Q ss_pred CCcEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 000481 592 DRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 658 (1467)
+..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997432 24699999999999999999999999999999999999999999998764
Q ss_pred ------------------eEEEEccCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCc
Q 000481 659 ------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLT 711 (1467)
Q Consensus 659 ------------------~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t 711 (1467)
.|+||+|+| .+++.|++|||.|+.. .+.+ +..+.++.+++.. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 279999998 6888999999998742 2222 2333344443321 1
Q ss_pred cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-cCCEEEE
Q 000481 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILV 790 (1467)
Q Consensus 712 ~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~ 790 (1467)
..++.+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+. .||+|++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 234678899999999999999999999999999999999999999988755444456899999999999875 5999999
Q ss_pred EeCCeEeEecChHHHHhc
Q 000481 791 LEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 791 l~~G~i~~~G~~~~l~~~ 808 (1467)
|++|++++.|+++++...
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999998754
No 304
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6.3e-38 Score=360.80 Aligned_cols=224 Identities=25% Similarity=0.382 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCC-------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH
Q 000481 1215 RIELRQLKIRYRP-------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~-------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~ 1287 (1467)
-|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 123699999999999999999999999999999999999999999999999999866666
Q ss_pred HHhhccEEeccCCc--cccc-chHHhcCC---CC-C----CCHHHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCCh
Q 000481 1288 DLRVKLSIIPQEPT--LFRG-SVRTNLDP---LG-L----YSDDEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~--LF~g-TIR~NLdp---~~-~----~sd~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
..|++++|+||+|. ++.. |+.+|+.- .. . ..++++.++++.+++. +... .. ..+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------YY----PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------cC----chhcCH
Confidence 66778999999985 4443 77877631 11 1 1235678889999884 3322 22 247999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|||||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 37899999999999987 9999999999999999
Q ss_pred ChhHHhcc--CChhHHHHH
Q 000481 1433 EPSKLMET--NSSFSKLVA 1449 (1467)
Q Consensus 1433 ~p~~Ll~~--~~~f~~lv~ 1449 (1467)
+++++.+. ...+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 99999873 334445544
No 305
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.6e-38 Score=366.83 Aligned_cols=212 Identities=25% Similarity=0.396 Sum_probs=182.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999963 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EeccCCcccc-cchHHhcCCCC---CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPLG---LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~~---~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||+|.+|. .|+++|+..+. ..+++ .+.++++.+++.+. +++.+ .+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 59999995211 12333 34456666665433 34443 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|+++|++|||||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998753 47899999999999976 999999999999999999999763
No 306
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-38 Score=373.61 Aligned_cols=216 Identities=24% Similarity=0.418 Sum_probs=187.3
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+++. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999953 359999999999999999999999999999999999999999999999999988765 47789
Q ss_pred EEeccCCccccc-chHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+|++|++.+|.. |+++|+.. .. ..+ ++++.++++..++.++....|. +||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----------~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-----------QLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh-----------hCCHHHHHHHHHHH
Confidence 999999999976 99999952 11 122 2456788888888766555443 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||+++|++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||+||++|++++.|+|+++.+ +.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999998888777653 37899999999999765 99999999999999999999987 44
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 444
No 307
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-38 Score=357.45 Aligned_cols=216 Identities=23% Similarity=0.416 Sum_probs=184.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999963 469999999999999999999999999999999999975 4 59999999999964 3455
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++++||+|.+|.+|+++|+... +... ++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999998521 1111 345667778887754332 1223345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 236 ~ 236 (252)
T PRK14255 236 L 236 (252)
T ss_pred c
Confidence 6
No 308
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=361.83 Aligned_cols=218 Identities=26% Similarity=0.399 Sum_probs=185.6
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCCC--C
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICSM--G 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~i--~ 1285 (1467)
...|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346999999999953 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC---CCC-C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL---GLY-S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||+|.+|.+|+++|+... ... + ++++.++++..++.+.+.. .++ .....|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RLD----KNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---Hhh----CChhhCCHHH
Confidence 34678999999999999999999999521 111 1 2346677888877543321 223 3456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|++|||||||++||.++.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 268 ~~~ 270 (286)
T PRK14275 268 LFT 270 (286)
T ss_pred HHh
Confidence 987
No 309
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.7e-38 Score=351.63 Aligned_cols=209 Identities=25% Similarity=0.350 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-|+++|++++|.. .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EeccCCcccccchHHhcCC----CCC-CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1295 IIPQEPTLFRGSVRTNLDP----LGL-YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp----~~~-~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++||+|.+|+.|+++|+.. .+. ..++++.++++..++.+.. ......+||+|||||++||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI----------LTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999952 111 1234566778887774311 123345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEe-CCEEEEecChh
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLS-YGKLLEYDEPS 1435 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~-~G~ivE~g~p~ 1435 (1467)
+|+++||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+..||+|++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998764 3789999999999998899999995 56667788875
No 310
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.2e-37 Score=356.05 Aligned_cols=222 Identities=23% Similarity=0.361 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CcceEEECCeeCCCCCHHHHh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP----AGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~----~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
.|+++|++++| + .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.+++.. +..|
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 59999999999 2 3599999999999999999999999999999999999999 999999999998732 2234
Q ss_pred hccEEeccCCc-ccc--cchHHhcC----CCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPT-LFR--GSVRTNLD----PLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~-LF~--gTIR~NLd----p~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
+.++|+||+|. .|. .|+.+|+. ..+ ...+++++++++.+++.+.. +.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHHH
Confidence 67999999985 444 47776652 122 23456788999999886531 1223345679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999987643 7899999999999975 99999999999999999999987
Q ss_pred -cCC-hhHHHHH
Q 000481 1440 -TNS-SFSKLVA 1449 (1467)
Q Consensus 1440 -~~~-~f~~lv~ 1449 (1467)
... .++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 333 4444443
No 311
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.7e-38 Score=371.22 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=174.0
Q ss_pred CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCe----eCCCCCHHHHh----hccEEeccCCc
Q 000481 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV----DICSMGLKDLR----VKLSIIPQEPT 1301 (1467)
Q Consensus 1230 ~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~----dI~~i~l~~LR----~~i~iIpQdp~ 1301 (1467)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||. |+.+.+.+.+| ++|++|||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 77777665543 58999999999
Q ss_pred ccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1302 LFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1302 LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+|+ .|+++|+... ...+ .+...++++.+++.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999521 1122 245678899999877654433 36999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999999999999999987643 7899999999999855 99999999999999999999987
No 312
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7e-38 Score=369.43 Aligned_cols=211 Identities=26% Similarity=0.422 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++|+
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998654 56889999
Q ss_pred EeccCCcccc-cchHHhcCCCC---CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPLG---LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~~---~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||++.+|. .|+++|+..++ ..+.+ .+.++++.+++.+ ..+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHHHHHHHH
Confidence 9999999874 59999995321 12222 3445666666543 344444 3699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999998764 47999999999999976 99999999999999999999976
No 313
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9e-38 Score=365.08 Aligned_cols=210 Identities=22% Similarity=0.361 Sum_probs=185.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|.. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+ ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999953 459999999999999999999999999999999999999999999999999987 44678999999
Q ss_pred eccCCccccc-chHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++||..+. ..+ ++++.++++..++.+... ....+||+|||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999987 9999995211 122 345677778877765432 22357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999987778999999999999987 99999999999999999999876
No 314
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=349.94 Aligned_cols=208 Identities=25% Similarity=0.406 Sum_probs=183.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++||+++|+. . ..|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999987654 3678999
Q ss_pred eccCCccccc-chHHhcCC-CCC------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP-LGL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp-~~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. +.. ..++++.++++.+++.+.+...|. .||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999986 99999962 211 124568889999999877665553 5899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999987643 7899999999999876 899999999999999999999864
No 315
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.4e-38 Score=349.90 Aligned_cols=200 Identities=27% Similarity=0.448 Sum_probs=171.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC--CCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS--MGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~--i~l~~LR~~i 1293 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999954 459999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred EEeccCCcccc-cchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999987 5999999532 1222 23456677777775544332 247999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999764 47899999999999976 999999999975
No 316
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=355.05 Aligned_cols=222 Identities=24% Similarity=0.422 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEEC------CeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID------GVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~ID------G~dI~~i~l~~ 1288 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+| |.++.+++...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999953 459999999999999999999999999999999999999998666655 47777778888
Q ss_pred HhhccEEeccCCccccc-chHHhcCCC----CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1289 LRVKLSIIPQEPTLFRG-SVRTNLDPL----GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
+|++++|+||+|.+|.+ |+++|+... +...++ .+.++++..++.+.+.. .....+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHHH
Confidence 99999999999999976 999999621 111222 35677788887654311 122345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|+|||||++||..+.+.+.+.|++..+++|+|+++|+++.+.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999954 9999999999999999999998
Q ss_pred c-cCChhH
Q 000481 1439 E-TNSSFS 1445 (1467)
Q Consensus 1439 ~-~~~~f~ 1445 (1467)
+ +...+.
T Consensus 241 ~~~~~~~~ 248 (257)
T PRK14246 241 TSPKNELT 248 (257)
T ss_pred hCCCcHHH
Confidence 7 343343
No 317
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.5e-38 Score=347.63 Aligned_cols=201 Identities=25% Similarity=0.439 Sum_probs=176.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. +++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+.+ .+|+++++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999952 578999999999999999999999999999999999999999999999997644 46889999
Q ss_pred eccCCccccc-chHHhcC-CCC---C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLD-PLG---L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLd-p~~---~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+. ++. . ..++++.++++..++.+.....|. +||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999975 9999985 221 1 124567889999998776655543 6899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
+++|+|++|||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999998764 37899999999999876 99999999999999874
No 318
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.9e-37 Score=345.78 Aligned_cols=205 Identities=39% Similarity=0.607 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|+++.|+.. ..++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999642 25699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
+|++|+++++..|++||+.++.. .+++++.+.++.+++.+.++.+|.|.+|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999998754 34566778888899998899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEec
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G 800 (1467)
++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999998765444 33458999999999988779999999999998654
No 319
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-37 Score=357.07 Aligned_cols=211 Identities=22% Similarity=0.363 Sum_probs=184.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999953 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eccCCc-ccccchHHhcCCCC----C-------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1296 IPQEPT-LFRGSVRTNLDPLG----L-------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1296 IpQdp~-LF~gTIR~NLdp~~----~-------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.... ....||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999995 45679999995311 0 113357788888888654332 234699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||++.+|+++||||||++||..+.+.+.+.|++.. ++.|+|+++|+++.+. -||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998764 3789999999999995 499999999999999999999865
No 320
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=366.52 Aligned_cols=224 Identities=21% Similarity=0.366 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeCC--CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC----CCcceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE----PAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~--~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~----~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
-++++|++++|.. +...+|+||||+|++||.+||||+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999953 22459999999999999999999999999999999999986 58999999999999988776
Q ss_pred Hh----hccEEeccCCcc--cc-cchHHhcC-C---C---CC------CCHHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1289 LR----VKLSIIPQEPTL--FR-GSVRTNLD-P---L---GL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1289 LR----~~i~iIpQdp~L--F~-gTIR~NLd-p---~---~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
++ ++|++|||||.. +. .|+.+|+. + . +. ..++++.++|+++++.+.... ++ .
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~~----~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----MR----S 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----Hh----C
Confidence 54 479999999973 33 48888873 1 1 10 013467889999998753211 11 1
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeC
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSY 1425 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~ 1425 (1467)
....||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2247999999999999999999999999999999999999999999997543 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhc-cCChhHH
Q 000481 1426 GKLLEYDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1426 G~ivE~g~p~~Ll~-~~~~f~~ 1446 (1467)
|+|+|.|+++++++ +...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999987 4445544
No 321
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=352.00 Aligned_cols=200 Identities=27% Similarity=0.392 Sum_probs=168.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCCCC-CHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 SIAYVSQTSWIQSG-SIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~-ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.|+|++|++.+++. |++||+.++.. .+. ++..++++.+++.+.. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 28999999988775 99999988632 222 2344455555554322 2455689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999998765544444 38999999999998875 99999999999999999988764
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
No 322
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-38 Score=348.49 Aligned_cols=200 Identities=26% Similarity=0.410 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999953 459999999999999999999999999999999999999999999999998863 56789999
Q ss_pred eccCCccccc-chHHhcCCCC---CC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLG---LY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~---~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+.... ...+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999986 9999984211 11 13456677777776554332 3357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998754 47899999999999876 9999999999999865
No 323
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.4e-37 Score=354.60 Aligned_cols=219 Identities=22% Similarity=0.393 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCee-----CCCCCHHH-
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD-----ICSMGLKD- 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~d-----I~~i~l~~- 1288 (1467)
-++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5999999999953 359999999999999999999999999999999999999999999999999 88776655
Q ss_pred ---HhhccEEeccCCc--ccc-cchHHhcC----CCCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1289 ---LRVKLSIIPQEPT--LFR-GSVRTNLD----PLGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1289 ---LR~~i~iIpQdp~--LF~-gTIR~NLd----p~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
.|+.++|+||+|. ++. .|+++|+. .++... ++++.++++..++.+ +.....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 333 47777763 122111 233445555555431 12334557899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++||||++++|+||||||||++||.++.+.+.+.|++..+ +.|+|+|+|+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987543 7899999999999975 999999999999999
Q ss_pred cChhHHhc-cCChhH
Q 000481 1432 DEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1432 g~p~~Ll~-~~~~f~ 1445 (1467)
|+|+++.+ +...|.
T Consensus 234 ~~~~~~~~~~~~~~~ 248 (258)
T PRK11701 234 GLTDQVLDDPQHPYT 248 (258)
T ss_pred CCHHHHhcCCCCHHH
Confidence 99999986 333343
No 324
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=356.17 Aligned_cols=211 Identities=22% Similarity=0.347 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC--------cceEEECCeeCCCCCHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA--------GGSILIDGVDICSMGLK 1287 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~--------~G~I~IDG~dI~~i~l~ 1287 (1467)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999953 35999999999999999999999999999999999999998 99999999999988888
Q ss_pred HHhhccEEeccCCc-ccccchHHhcCCCC--------CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1288 DLRVKLSIIPQEPT-LFRGSVRTNLDPLG--------LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~-LF~gTIR~NLdp~~--------~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
.+|+.++++||++. +|..|+++|+.... .. .++.++++++..++.+.. ......|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----------GRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 88899999999986 57889999985311 11 123567788888775432 233457999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEE
Q 000481 1356 GQRQLFCLGRVLL---------KRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVL 1423 (1467)
Q Consensus 1356 GQrQrl~LARAlL---------r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl 1423 (1467)
|||||++||||++ .+|++|||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999997643 6899999999999964 9999999
Q ss_pred eCCEEEEecChhHHhc
Q 000481 1424 SYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1424 ~~G~ivE~g~p~~Ll~ 1439 (1467)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999876
No 325
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=366.01 Aligned_cols=202 Identities=27% Similarity=0.349 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .|+|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 6899999999963 4689999999999999999999999999999999999999999999987 4999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.+|. .|++|||.|+.. .+ +++.+++++..++....+ ....+|||||||||+|||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 999999885 599999999743 22 234555666666644332 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+.+|+++|||||||+||+.+.+.+.+.+..... .|+|+|+|||+.+.+.. ||+|++|++|+|++.|+++++....
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999998765544433 38999999999998755 8999999999999999999987653
No 326
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=354.40 Aligned_cols=210 Identities=21% Similarity=0.309 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---cceEEECCeeCCCC-----CH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA---GGSILIDGVDICSM-----GL 1286 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~---~G~I~IDG~dI~~i-----~l 1286 (1467)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999953 45999999999999999999999999999999999999886 49999999998754 24
Q ss_pred HHHhhccEEeccCCccccc-chHHhcCCC---------------CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1287 KDLRVKLSIIPQEPTLFRG-SVRTNLDPL---------------GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~g-TIR~NLdp~---------------~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
..+|++++|+||++.+|.+ |+++|+... ....++++.++++..++.+.... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998875 999998521 00113457778888887654332 23
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1351 ~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999864 37899999999998755 99999999999
Q ss_pred EEEecChhHH
Q 000481 1428 LLEYDEPSKL 1437 (1467)
Q Consensus 1428 ivE~g~p~~L 1437 (1467)
+++.|+|+++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999996
No 327
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-37 Score=359.47 Aligned_cols=212 Identities=28% Similarity=0.486 Sum_probs=188.5
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++.+|.. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4789999999963 24599999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EeccCCccccc-chHHhcCCCC-------CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLG-------LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~-------~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||+|.+++. |++|||+.+. ...++.+.+.++..+|.+.- +.. ...||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHHH
Confidence 99999998876 9999996432 12356788999999987622 222 24699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS-N-CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~-~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.+|.++.+.. ||||++|++|+++.+|+++++.+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999998765 4 799999999999988 99999999999999999999875
No 328
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=356.67 Aligned_cols=204 Identities=25% Similarity=0.379 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643234699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+||+|+|. ++..||+|||.|+.. .+. ++..++++.+++....+ ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567799999998742 222 34566777777765444 34568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999988765544444 38999999999999878999999999999999999887654
No 329
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=357.77 Aligned_cols=204 Identities=22% Similarity=0.399 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
|+++|++|+|+.+.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 3699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ---~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|+| .+++.|+.||+.|+.. ... +++.++++..++.+++. .+...+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 279999998 6888899999998742 222 34555566666543221 2556799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999876544333458999999999998864 999999999999999999998
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
No 330
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.2e-37 Score=352.20 Aligned_cols=213 Identities=22% Similarity=0.299 Sum_probs=178.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHHH-hhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKDL-RVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~L-R~~ 1292 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999953 35999999999999999999999999999999999994 7999999999999998877664 456
Q ss_pred cEEeccCCccccc-chHHhcCCC----CC------CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPL----GL------YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~----~~------~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..||+||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999987 899987411 10 11 23466777777765321 122221 2499999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc--cCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~--~DrIlVl~~G~ivE~g~p 1434 (1467)
|||++||||++++|++|||||||++||..+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999998764 47899999999999976 799999999999999999
Q ss_pred hHHhc
Q 000481 1435 SKLME 1439 (1467)
Q Consensus 1435 ~~Ll~ 1439 (1467)
++.-.
T Consensus 230 ~~~~~ 234 (243)
T TIGR01978 230 ELAKE 234 (243)
T ss_pred HHhcc
Confidence 86543
No 331
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=357.69 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
++++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ---~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.|+||+|+| .+++.|++|||.|+.. .+. ++++++++.++|..++. ..+..+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999997 5778899999998732 222 34556666776653332 2456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998765544433 38999999999999865 99999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 332
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2e-37 Score=362.51 Aligned_cols=199 Identities=24% Similarity=0.414 Sum_probs=174.3
Q ss_pred CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCccccc-chH
Q 000481 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVR 1308 (1467)
Q Consensus 1230 ~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR 1308 (1467)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++++||++.+|.+ |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 359999999999999999999999999999999999999999999999999976 345778999999999999986 999
Q ss_pred HhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1309 TNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1309 ~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
+|+.... ..+ ++++.++++.+++.+.. +..+ .+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9995321 112 34577788888876543 2222 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1382 SIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
+||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998764 47899999999999976 999999999999999999999763
No 333
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.8e-37 Score=366.77 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=163.6
Q ss_pred CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcCCC-
Q 000481 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1467)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l~~- 671 (1467)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 5689999999999999999999999999999999999999999999876 4999999999987
Q ss_pred CCHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q 000481 672 GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1467)
Q Consensus 672 ~ti~eNi~~g~~~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLD 744 (1467)
.||+|||.|+.++ +. ++..++++.++|.... ++.+.+|||||||||+|||||+.+|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999987432 22 3344555555554433 3566799999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||||+||+.+.+.+.+.+..... .++|+|+|||+++++.. ||+|++|++|++++.|++++++...
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999887765543 48999999999998654 9999999999999999999998653
No 334
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.4e-37 Score=365.45 Aligned_cols=202 Identities=30% Similarity=0.390 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999963 4689999999999999999999999999999999999999999999987 3999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.+|. .|++|||.|+.. .+ .++.+++++..++.+..+ .++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998885 699999999743 22 234555666666554333 46679999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+.+|+++|||||||+||+.+.+++.+.+.+... .|.|+|+|||+.+++.. ||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999998776554433 38999999999998765 9999999999999999999998754
No 335
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-37 Score=365.82 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHHHHhh
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLKDLRV 1291 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~~LR~ 1291 (1467)
|++ |++++|.. . .+ |+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+. .....|+
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 89999953 2 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred ccEEeccCCcccc-cchHHhcCC-CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1292 KLSIIPQEPTLFR-GSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~-gTIR~NLdp-~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
+++|+||++.+|. .|+++|+.. .....++++.++++..++.+.....| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999997 599999962 22234567888999998876655443 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999999999987653 6899999999998876 99999999999999999999987
No 336
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-37 Score=356.60 Aligned_cols=206 Identities=26% Similarity=0.405 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996432 14699999999999999999999999999999999999999999998866
Q ss_pred --eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.|+||||+| .+++.|++|||.|+.. .+. +++.++++.+++.. .+....++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 5678899999998642 232 23455666666541 011235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999998765544433 3899999999999986 5999999999999999999988
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 653
No 337
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.2e-37 Score=364.73 Aligned_cols=203 Identities=28% Similarity=0.365 Sum_probs=174.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~ 661 (1467)
..++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 45899999999963 4689999999999999999999999999999999999999999999987 399
Q ss_pred EEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
||+|++.+|. .||+|||.|+.. .. +++.+++++..++.+.++. +..+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999998875 599999999753 22 2345566777777655543 446899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
|+.+|+++|||||||+||++..+.+.+.+..... .|.|+|+|||+.+.+. .||+|++|++|+|++.|+++++....
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999998766554433 3899999999999865 59999999999999999999987654
No 338
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-37 Score=346.55 Aligned_cols=199 Identities=30% Similarity=0.406 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999963 4699999999999999999999999999999999999999999998876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCCC-------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 664 SQTSWIQS-GSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|+|.++. .|++||+.++... +. ++.++.++.+++.+.. .....+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHH
Confidence 99998875 6999999986321 21 2334455555554322 245678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||++.+|+++||||||++||+++.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999998765544433 37899999999998765 89999999999999999988764
No 339
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7.4e-37 Score=343.07 Aligned_cols=204 Identities=25% Similarity=0.372 Sum_probs=178.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 578999999963 45999999999999999999999999999999999999999999999999876422 357999
Q ss_pred eccCCcccc-cchHHhcCC---CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1296 IPQEPTLFR-GSVRTNLDP---LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp---~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
+||++.+|. .|+++|+.. ....+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 599999852 1123567888999999887654332 2469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
++|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998754 47899999999999865 99999999999999999865
No 340
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-37 Score=329.99 Aligned_cols=171 Identities=41% Similarity=0.725 Sum_probs=161.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|....+.+++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 57899999996543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1376 LDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
|||||++||..+...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998767899999999999998899999999985
No 341
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.4e-37 Score=364.01 Aligned_cols=203 Identities=28% Similarity=0.419 Sum_probs=174.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCC--cEEEEcC-----------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~--G~i~~~g-----------~ 659 (1467)
+.++++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999963 469999999999999999999999999999999999999999 9999877 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
|+||+|++.+|. .||+|||.|+.. ... ++++++++..++.+..+ .+..+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 999999998885 599999998742 222 34555666666654443 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||+.+|+++|||||||+||+...+.+.+.+.+...+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999987766544444 7899999999998765 999999999999999999999865
Q ss_pred C
Q 000481 809 G 809 (1467)
Q Consensus 809 ~ 809 (1467)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 4
No 342
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=2.3e-36 Score=390.41 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=93.2
Q ss_pred Cccc-ccccCCCCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc
Q 000481 1341 KLDS-SVSDEGENWSAGQRQLFCLGRVLLKRN---RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI 1415 (1467)
Q Consensus 1341 gLdt-~v~e~G~nLS~GQrQrl~LARAlLr~~---~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~ 1415 (1467)
||+. ..+.....||||||||+.|||+|+++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356677889999999999999999999 9999999999999999999999998764 5789999999999999
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhc-cCChhHHH
Q 000481 1416 DSDMVMVL------SYGKLLEYDEPSKLME-TNSSFSKL 1447 (1467)
Q Consensus 1416 ~~DrIlVl------~~G~ivE~g~p~~Ll~-~~~~f~~l 1447 (1467)
.||+|++| ++|+|++.|+|+++.+ +.+.-.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~ 936 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRY 936 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHH
Confidence 99999999 6999999999999997 44443333
No 343
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1e-36 Score=350.65 Aligned_cols=222 Identities=23% Similarity=0.372 Sum_probs=184.5
Q ss_pred eEEEEEEEEEeCCC-------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH
Q 000481 1215 RIELRQLKIRYRPN-------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~ 1287 (1467)
-|+++||+++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999631 35699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhhccEEeccCCc--cc-ccchHHhcC-CC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1288 ---DLRVKLSIIPQEPT--LF-RGSVRTNLD-PL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1288 ---~LR~~i~iIpQdp~--LF-~gTIR~NLd-p~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
.+|++++++||+|. ++ ..|+++|+. +. ...+ ++.+.++++..++... ........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 47889999999984 43 368999973 11 1111 1235556666555321 123345679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
|+|||||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999987643 7899999999999986 99999999999999
Q ss_pred ecChhHHhccCChhHH
Q 000481 1431 YDEPSKLMETNSSFSK 1446 (1467)
Q Consensus 1431 ~g~p~~Ll~~~~~f~~ 1446 (1467)
.|+++++.+.++.|..
T Consensus 233 ~g~~~~~~~~~~~~~~ 248 (268)
T PRK10419 233 TQPVGDKLTFSSPAGR 248 (268)
T ss_pred eCChhhccCCCCHHHH
Confidence 9999999876665543
No 344
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9.3e-37 Score=361.69 Aligned_cols=202 Identities=32% Similarity=0.444 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3789999999963 4699999999999999999999999999999999999999999999877 4999
Q ss_pred EccCCcCCC-CCHHHHHhcCCCC-------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKPM-------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~~-------~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
|+|++.++. .|++|||.|+... + +++..+.++..++.+..+ .+..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHH
Confidence 999998886 5999999997431 2 134455566666543332 4567999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||||+.+|+++|||||||+||+++.+.+.+.+.....+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999987655544433 7899999999998765 899999999999999999999765
Q ss_pred C
Q 000481 809 G 809 (1467)
Q Consensus 809 ~ 809 (1467)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
No 345
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-37 Score=354.80 Aligned_cols=205 Identities=21% Similarity=0.406 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEccCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.||||+|+| .+++.|++|||.|+.. .+.+ +..++++.+++..+. ....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 379999997 5777899999998732 2332 333444444443211 2256779999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~ 803 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998765444333 4899999999999986 48999999999999999998
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88654
No 346
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=355.43 Aligned_cols=204 Identities=25% Similarity=0.410 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996432 13699999999999999999999999999999999999999999998753
Q ss_pred -----------------------eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCC
Q 000481 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFD 706 (1467)
Q Consensus 659 -----------------------~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~ 706 (1467)
.|+||+|+| .++..||+|||.|+.. .+. ++..++++.++|..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 5678899999998742 232 3445566666664222
Q ss_pred CCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-cC
Q 000481 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EV 785 (1467)
Q Consensus 707 ~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~ 785 (1467)
......+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|+|||+++.+. .|
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 12566799999999999999999999999999999999999999887655444446899999999999875 49
Q ss_pred CEEEEEeCCeEeEecChHHHHhc
Q 000481 786 DRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 786 d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|+|++|++|++++.|+.+++...
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999988654
No 347
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.8e-37 Score=344.53 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=175.6
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHh
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR 1290 (1467)
++++|++++|+++. ..+|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996432 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred hccEEeccCCcccc-cchHHhcCCCC----CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLDPLG----LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLdp~~----~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
+.++++||+|.+|. .|+.+|+.... ..+. +.+.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999997 69999995321 1222 34677788888776655544 36999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+||||++++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999987653 7999999999997767999999999986
No 348
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-37 Score=325.85 Aligned_cols=214 Identities=24% Similarity=0.449 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-HhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i~ 1294 (1467)
++++|++..|.+ -.+|+||||++++||.|+++||||+|||||+++|+|+.++.+|+|.++|.||+..+.|+ .|..|+
T Consensus 4 L~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 4 LEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 789999999964 45999999999999999999999999999999999999999999999999999999887 588999
Q ss_pred EeccCCccccc-chHHhcCCCCC-CCH-----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLGL-YSD-----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~~-~sd-----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+|||...+|.. ||+|||..... ..+ ..+.++.+. .|. |.......+.+|||||+|-++|||||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP~-Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FPR-LKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Chh-HHHHhcCcccCCChHHHHHHHHHHHH
Confidence 99999999976 99999953211 111 112223222 232 34445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccC
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
+.+||+|+|||||.+|-+.--+.|.++|++..+ +-||+.|-++.....+ +||.+||++|+|+..|++++|++..
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999998764 5699999999998875 9999999999999999999999843
No 349
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=7.1e-37 Score=346.43 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=166.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 4699999999999999999999999999999999999999999998876 28
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCCC-------------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKPM-------------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
+|+||++.++.. |++||+.++... +. ++..+.++..++. ...+.+..+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCH
Confidence 999999988765 999999886321 01 1223333333332 223466789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecC
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 801 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999887655444478999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000481 802 YQELLL 807 (1467)
Q Consensus 802 ~~~l~~ 807 (1467)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
No 350
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.5e-36 Score=339.46 Aligned_cols=198 Identities=42% Similarity=0.792 Sum_probs=178.4
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 658 (1467)
.+.|++|+|+.+ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999754 4699999999999999999999999999999999999999999998854
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
.++|++|++.+++.|++||+.++.+.+.++.+++++.+++.+.++.+|.|++|.++.+..+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999999999999999998766666778889999999889889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHH-HHHHh-cCCcEEEEEccCcchhhcCCEEEEEeCCe
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1467)
+++||||||++||+.+.+.+.+. ++... .+++|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988763 44443 34789999999999998899999999884
No 351
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=351.59 Aligned_cols=199 Identities=28% Similarity=0.446 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 4699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~--~l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+| .++..|++||+.|+.. .+ ++++.++++.+++.+..+. ...+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 5778899999998732 22 2355667777777654443 3458999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHH
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l 805 (1467)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999987655544445899999999999985 5999999999999999998654
No 352
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.3e-37 Score=343.71 Aligned_cols=197 Identities=31% Similarity=0.442 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC-----CCCCcEEEEcC-----------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~-----~~~~G~i~~~g----------- 658 (1467)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 46999999999999999999999999999999999999 99999998866
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 3899999998888899999988632 1 1 2345556666666544432110 4689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
|++||||++.+|+++||||||++||+.+.+.+++.+.+...+ +|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999987655444344 899999999998765 99999999999999988765
No 353
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-37 Score=341.28 Aligned_cols=223 Identities=25% Similarity=0.479 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-C----CcceEEECCeeCCCCCHHH
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-P----AGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-~----~~G~I~IDG~dI~~i~l~~ 1288 (1467)
++++|+++.|..+. -.+++||||+|++||.+||||.|||||||+.++|+|+.+ | .+|+|.+||.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999996533 358999999999999999999999999999999999997 3 5799999999999999876
Q ss_pred Hh----hccEEeccCCcc-ccc--chHHhc----CCCCCC-C----HHHHHHHHHHcCCchH---HhhCCCCcccccccC
Q 000481 1289 LR----VKLSIIPQEPTL-FRG--SVRTNL----DPLGLY-S----DDEIWKALEKCQLKTT---ISSLPNKLDSSVSDE 1349 (1467)
Q Consensus 1289 LR----~~i~iIpQdp~L-F~g--TIR~NL----dp~~~~-s----d~ei~~aL~~~~l~~~---i~~lp~gLdt~v~e~ 1349 (1467)
+| +.|++|||||.- |+- ||.+-+ .--... + .+...+.|+.+++.+- ..+-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 54 489999999852 221 332222 110111 1 3467788999988753 33334
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCC
Q 000481 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYG 1426 (1467)
Q Consensus 1350 G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G 1426 (1467)
..||||||||+.||-|++.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||.||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 3689999999999999999999999999999999999999999998765 48999999999999976 9999999999
Q ss_pred EEEEecChhHHhc-cCChhH-HHHH
Q 000481 1427 KLLEYDEPSKLME-TNSSFS-KLVA 1449 (1467)
Q Consensus 1427 ~ivE~g~p~~Ll~-~~~~f~-~lv~ 1449 (1467)
+|+|.|+.+++++ +.-.|. .|++
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999998 444443 4443
No 354
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-37 Score=348.70 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=173.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.. +.++++
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999953 4599999999999999999999999999999999999999999999999998752 346899
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|. .|+++|+... .... ++++.++++..++.+.... ...+||||||||++||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999987 5999999521 1122 2356778888887654332 2357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEe--CCEEEEecCh
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLS--YGKLLEYDEP 1434 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~--~G~ivE~g~p 1434 (1467)
+++|++|||||||++||+.+...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998753 47999999999999866 99999998 5999998764
No 355
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=364.10 Aligned_cols=201 Identities=26% Similarity=0.387 Sum_probs=173.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.++. .|++|||.|+.. .+ +++++++++.+++.+..+ ....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998875 599999998743 22 234566677776654443 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+.+|+++|||||||+||+++.+.+.+.+.+... .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999998775554433 38999999999998765 999999999999999999998764
No 356
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-37 Score=340.25 Aligned_cols=192 Identities=31% Similarity=0.418 Sum_probs=162.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
||++.++. .|++||+.++.. .+. +++.++++.+++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 99988765 699999987632 122 33455666666654433 445689999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998765544433 48999999999998765 8999999999998765
No 357
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1e-36 Score=335.59 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=163.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCcceEEECCeeCCCCCHHHH-hhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAGGSILIDGVDICSMGLKDL-RVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl--~~~~~G~I~IDG~dI~~i~l~~L-R~~ 1292 (1467)
++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4599999999999999999999999999999999999 58999999999999998876654 566
Q ss_pred cEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
++|+||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999986 5555550 0 01369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc--ccCEEEEEeCCEEEEecChhHHhc
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI--DSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~--~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+||+|||||++||.++.+.+.+.|++.. +++|+|+++|+++.+. -||+|++|++|++++.| +.++.+
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~~ 193 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELAL 193 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHHh
Confidence 9999999999999999999999998764 3789999999999998 59999999999999999 666653
No 358
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-37 Score=335.90 Aligned_cols=214 Identities=27% Similarity=0.447 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCe---eCCCCCHHHHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV---DICSMGLKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~---dI~~i~l~~LR~ 1291 (1467)
.|+++|++..|+. ..+++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.+++..+ .+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 3778888888853 35899999999999999999999999999999999999999999999999 88874444 47
Q ss_pred ccEEeccCCcccc-cchHHhcCCCCC----------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1292 KLSIIPQEPTLFR-GSVRTNLDPLGL----------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~-gTIR~NLdp~~~----------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+||+|.|+.-||. .||.+|+. |+- -.+..+.+-|+.++|...-+..|. +||||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIA-FGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----------QLSGGQrQR 145 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIA-FGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA-----------QLSGGQRQR 145 (345)
T ss_pred ceeEEEechhhcccchHHhhhh-hcccccccCCChhhHHHHHHHHHHHhcccchhhcCch-----------hcChHHHHH
Confidence 8999999999986 59999995 331 234556777999999887777664 579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+||||||...|++|+||||.++||+.-.+.+++-+++.. -++|+++|||+.+.+.. ||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999888754 37899999999998866 999999999999999999999
Q ss_pred hc-cCChh
Q 000481 1438 ME-TNSSF 1444 (1467)
Q Consensus 1438 l~-~~~~f 1444 (1467)
.. +++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88 66665
No 359
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-37 Score=328.54 Aligned_cols=170 Identities=31% Similarity=0.550 Sum_probs=157.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999998766 677899999
Q ss_pred eccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|.+ |+++|+. ||+|||||++||||++++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999973 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
+|||||++||..+.+.+.+.|++.. ++.|+|+++|+.+.+.+ ||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998764 46899999999999884 999999999974
No 360
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-37 Score=329.77 Aligned_cols=172 Identities=33% Similarity=0.519 Sum_probs=158.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC--HHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~--l~~LR~~i 1293 (1467)
|+++|++++|+. .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999953 45999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
+++||+|.+|.+ |+++|+... ||+|||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998632 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
+++|||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999987654 5899999999999985 99999999985
No 361
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.6e-37 Score=340.89 Aligned_cols=190 Identities=24% Similarity=0.414 Sum_probs=161.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+.+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++. .|++||+.++.. .. ++++.++++.+++.+..+ ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 3899999998775 699999987521 11 245566677777654443 3446899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
|||++.+|+++||||||++||+++.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999877554444458999999999999875 899999999975
No 362
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=360.32 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996321 35799999999999999999999999999999999999999999998876
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.|+|++|++.++. .|++||+.++.. .+. ++..+.++..++.+.. .....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 3999999998875 699999998632 222 2344455555554332 2456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999998865554433 38999999999999876 99999999999999999999876
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 363
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.2e-36 Score=336.85 Aligned_cols=189 Identities=33% Similarity=0.505 Sum_probs=162.0
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEEEcc
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQ 665 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~yv~Q 665 (1467)
+++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367899999632 4699999999999999999999999999999999999999999999877 4899999
Q ss_pred CC--cCCCCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 666 TS--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 666 ~~--~l~~~ti~eNi~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
++ .+++.|++||+.++.+ .++++..++++.+++.+..+ ....+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 97 4677899999998643 22356777888887765443 34458999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
+||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999876554444568999999999999875 9999999999974
No 364
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.6e-36 Score=345.27 Aligned_cols=220 Identities=20% Similarity=0.364 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCee-----CCCCCHHH-
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD-----ICSMGLKD- 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~d-----I~~i~l~~- 1288 (1467)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77776554
Q ss_pred ---HhhccEEeccCCcc---cccchHHhcC----CCCC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1289 ---LRVKLSIIPQEPTL---FRGSVRTNLD----PLGL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1289 ---LR~~i~iIpQdp~L---F~gTIR~NLd----p~~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
+|+.++++||+|.+ +..|+.+|+. .+.. ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 34679999999852 3457777762 1111 12345556666666532 12233456799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++||||++++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998754 37899999999999985 999999999999999
Q ss_pred cChhHHhc-cCChhHH
Q 000481 1432 DEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1432 g~p~~Ll~-~~~~f~~ 1446 (1467)
|+++++.. +...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQ 246 (253)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 99999986 3344443
No 365
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=340.60 Aligned_cols=197 Identities=31% Similarity=0.422 Sum_probs=165.7
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEcc
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1467)
++++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996421 14799999999999999999999999999999999999999999999877 4899999
Q ss_pred CCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
++.++. .|++||+.++.. .. .++..+.++.+++.+.+. ....+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 998876 699999987532 11 234556666666654443 34568999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEe--CCeEeEecCh
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~G~~ 802 (1467)
|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999998875554433 48999999999998765 89999999 7999988764
No 366
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=340.62 Aligned_cols=197 Identities=21% Similarity=0.369 Sum_probs=167.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.++. .|++||+.++.. .+ +++.++.++.+++.+..+ .+..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998765 599999987421 21 234566677777654433 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
+.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999987655544444 7899999999999876 899999999999999887664
No 367
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=339.47 Aligned_cols=439 Identities=19% Similarity=0.258 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHH------HHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHH
Q 000481 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTG------EIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGV 411 (1467)
Q Consensus 339 ~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G------~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~ 411 (1467)
.+...++..+.|..|...+.+|-+.-...++ -...| ..=.++..|+..+.+.... ...+..+.++++.-..+
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~-l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYR-LAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHH-HHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999988664332 22222 2236888898877664332 23333444444444556
Q ss_pred HHHHHHHH---------HHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 000481 412 LFGVVGLG---------ALPGLVL--FLIC----GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE 476 (1467)
Q Consensus 412 L~~~lg~~---------~l~gl~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~ 476 (1467)
||.+.|.. .++|..+ +++. ..+...++|.+.+...+..+.-..--.....+..+...|-+|+-|+
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 66443321 1122111 1111 2222234444444333333333332233445667788899999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Q 000481 477 KFKSLIESRREKEFKWLSEAQLR----KAYGTVIYWM---SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1467)
Q Consensus 477 ~f~~~i~~~R~~E~~~l~~~~~~----~~~~~~~~~~---~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl 549 (1467)
.-++++++.-..-++..++.... ..+.....++ .|.++.+-- .-.+.++.|.+..+...|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~------~f~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR------YFSGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh------hhcCcChHHHHHHHHHHHHHHHHHH
Confidence 76666655444433332221111 0111111122 222221111 2237899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCccccc----cc-ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEec
Q 000481 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNNDDVRR----IS-LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621 (1467)
Q Consensus 550 ~~l~~~i~~~~~a~vs~~Ri~~fL~~~e---~~~~~~~~----~~-~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~ 621 (1467)
+.+-..+..+.+=++++.|+.+|-..-+ .+.....+ .. ....+..|+++|++..-|++ .+.+++.||+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~ 417 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVR 417 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeC
Confidence 9999999999999999999999974321 11100000 00 01115689999999998754 479999999999
Q ss_pred CCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCCCCHHHHHhcCCC---CCHHHHHHHHHHh
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKAC 696 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~~ti~eNi~~g~~---~~~~~~~~~~~~~ 696 (1467)
+|+.+.|.|+||||||||+++|.|+.|--+|+|.... .+-|+||.|.+..||+||-|++.+. ++++++.+++.+|
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~v 497 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV 497 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHc
Confidence 9999999999999999999999999999999998873 4899999999999999999999753 6789999999999
Q ss_pred cchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEc
Q 000481 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776 (1467)
Q Consensus 697 ~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvt 776 (1467)
+|.+..+.+.+-++ -...||||||||+++||.++++|++++|||.|||||++++..+++ .++..+.+.|+|-|.
T Consensus 498 gL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~ 571 (604)
T COG4178 498 GLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVG 571 (604)
T ss_pred CcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEec
Confidence 99999988765443 346799999999999999999999999999999999999999986 456667899999999
Q ss_pred cCcchhhcCCEEEEEe
Q 000481 777 HQVEFLSEVDRILVLE 792 (1467)
Q Consensus 777 H~~~~l~~~d~i~~l~ 792 (1467)
||.......++.+.+.
T Consensus 572 Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 572 HRPTLWNFHSRQLELL 587 (604)
T ss_pred cchhhHHHHhhheeec
Confidence 9988877666655543
No 368
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.7e-36 Score=354.29 Aligned_cols=202 Identities=24% Similarity=0.391 Sum_probs=170.6
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 660 (1467)
..++++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999963 4699999999999999999999999999999999999999999999876 49
Q ss_pred EEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
|||||++.++. .|++||+.|... .+. ++..++++.+++.+..+ .+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 99999998765 699999986321 122 23344555555433222 345689999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|++.+|++++|||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999887654444468999999999999976 999999999999999999998654
No 369
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=341.99 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=172.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999953 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
+|++|++.++..|++||+.++... ..++..+.++.+++..+.. .+...+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999889999999986432 2345556666666643221 245678999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999988765544333 48999999999999875 899999999999999999988754
No 370
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=348.39 Aligned_cols=203 Identities=24% Similarity=0.427 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 35699999999999999999999999999999999999999999999887 38
Q ss_pred EEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|++ .+++.|++|||.++.. .+. ++..++++.+++.+.++. ...+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNR-----------EPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4667899999998632 222 345667777777665554 3458999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999988755444433 8999999999999888999999999999999999888654
No 371
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.2e-36 Score=343.94 Aligned_cols=198 Identities=31% Similarity=0.433 Sum_probs=166.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCCC---------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
.++|++|++.++. .|++||+.++... +.++..++++.+++...+ ...+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 2899999998775 6999999875310 122344555555554333 246679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999988765544333 37899999999999865 8999999999999999
Q ss_pred ChHHH
Q 000481 801 NYQEL 805 (1467)
Q Consensus 801 ~~~~l 805 (1467)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98886
No 372
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.2e-36 Score=338.76 Aligned_cols=204 Identities=29% Similarity=0.449 Sum_probs=177.0
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.+.++++|++++|+.....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999753234699999999999999999999999999999999999999999999876
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
.++|++|++.+++.|++||+.++.. ....++.+..+...+.+.++.++.|..+.+++++.+|||||||||+||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 3899999999998999999998754 223333444455567778888888888888899999999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeE
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1467)
|+++||||||++||+++.+.+.+.+. ...+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALY-DWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999998876544 44457899999999999988999999999974
No 373
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-36 Score=343.83 Aligned_cols=199 Identities=30% Similarity=0.411 Sum_probs=166.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 14699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC------------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
.++|+||++.++. .|++||+.++.. .. .++..++++.+++... ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 3899999988765 699999987531 01 1233444555544332 2356779999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G 800 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999998775554433 4899999999999988 58999999999999999
Q ss_pred ChHHHH
Q 000481 801 NYQELL 806 (1467)
Q Consensus 801 ~~~~l~ 806 (1467)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
No 374
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=348.98 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=175.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 59999999999633 459999999999999999999999999999999999999999999999999752 12234699
Q ss_pred EeccCCcc---cccchHHhcCCC--------C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1295 IIPQEPTL---FRGSVRTNLDPL--------G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1295 iIpQdp~L---F~gTIR~NLdp~--------~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|+||+|.+ +..++++|+... . ...++.+.++++..++.+.. |+.+ .+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQI----GELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCCc----ccCCHHHHHH
Confidence 99999875 456889987421 0 01234567788888886653 2333 4699999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998764 47899999999998865 9999777 89999999999986
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
No 375
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.7e-36 Score=334.92 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=166.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 478999999953 4799999999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCC-CCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 664 SQTSWIQ-SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 664 ~Q~~~l~-~~ti~eNi~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
+|++.++ +.|++||+.++.. .++++.+++++..++.+..+ .+..+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998876 5799999987532 34566777777777765443 3567899999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999876554444468999999999999875 8999999999998765
No 376
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-37 Score=315.19 Aligned_cols=211 Identities=28% Similarity=0.397 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
+++.+++.+|.+ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+.+- +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678999999975 33389999999999999999999999999999999999999999999999999885 5678999999
Q ss_pred eccCCccccc-chHHhcCCCCC---CCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLGL---YSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~~---~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
++-+.-++.. |.||||..|+. .++. ++.+.-+..++.+. +|..++ +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHHH
Confidence 9977677754 99999975542 3333 44455555666555 344554 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS-NCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
.++|+|+|||||||+||..|.+.+++.|++... +++||.-+|-++.+. -||||+++.+|+++..|++++|.+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999987654 899999999999998 599999999999999999999987
No 377
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.9e-36 Score=332.49 Aligned_cols=189 Identities=25% Similarity=0.471 Sum_probs=164.1
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.++++|++++|+.. ..++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 24799999999999999999999999999999999999999999999876 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
|+||+|+|.+++.|++||+.+..++++++..+.++ ++++..+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998765444433333222 235778999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecC
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1467)
++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999988765444 456899999999999988899999999999998775
No 378
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.6e-36 Score=339.30 Aligned_cols=191 Identities=28% Similarity=0.419 Sum_probs=159.6
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14699999999999999999999999999999999999999999998764
Q ss_pred --eEEEEccCCcCCCC-CHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWIQSG-SIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~-ti~eNi~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.++|++|++.++.. |++||+.++... + ++++.++++.+++.+.+ .....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 38999999988765 999999986421 1 23445556665554333 245678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeE
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1467)
+||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999988765544434 48999999999999888999999999974
No 379
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=347.35 Aligned_cols=201 Identities=26% Similarity=0.446 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999953 24699999999999999999999999999999999999999999998875 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+|. +++.|++|||.++.. .+ .+++.++++.+++..... ..+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 567899999998642 22 234455566666654433 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+...+++.+.....+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999877654444468999999999999988999999999999999999887543
No 380
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.7e-36 Score=338.49 Aligned_cols=198 Identities=30% Similarity=0.477 Sum_probs=164.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 4699999999999999999999999999999999999999999998876 28
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCCCC-----HHHHHHHHHHh-cchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKPMD-----KARYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~~~-----~~~~~~~~~~~-~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
+|++|++.++.. |++||+.++.... .++..++++.. .+.. ....+..+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 999999988775 9999999864321 11223333333 1211 2235677999999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999877554444468999999999998765 8999999999999999887764
No 381
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=334.28 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=161.6
Q ss_pred eEEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHH
Q 000481 1215 RIELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~L 1289 (1467)
.+.++|++|.|+.+ ..++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999643 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hhccEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
|++++++||++.+|.+ |+++|+..... +. .+ +....||+|||||++||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~--------------~~----~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR---------CK--------------GN----EFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh---------hc--------------cc----cchhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 99999953210 00 12 223469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEc-cCchhhc-ccCEEEEEeCCEEEEec
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVA-HRVPTVI-DSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IA-HRl~ti~-~~DrIlVl~~G~ivE~g 1432 (1467)
++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998643 46766655 5556664 59999999999999865
No 382
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=343.67 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC---CCCcEEEEcC------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g------------ 658 (1467)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 469999999999999999999999999999999999974 6899999876
Q ss_pred -eEEEEccCCcCCCCCHHHHHhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 -SIAYVSQTSWIQSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~~ti~eNi~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.++|+||++.+++.|++||+.++... .+++..++++.+++.+.+..+ ..+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 38999999999999999999876311 122455667777775444321 2356789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
+||||++++|+++||||||++||+++...+.+.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELL-KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887644 444458999999999998875 89999999999999999998864
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 383
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.2e-36 Score=360.57 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=176.8
Q ss_pred EEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC----HHHHhhccEE
Q 000481 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKDLRVKLSI 1295 (1467)
Q Consensus 1220 nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~----l~~LR~~i~i 1295 (1467)
|++++|.. . .+ |+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 78999953 2 35 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred eccCCccccc-chHHhcCC-CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1296 IPQEPTLFRG-SVRTNLDP-LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp-~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
+||+|.+|.+ |+++|+.. ..... ++.+.+.++..++.+.....| .+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 9999999976 99999962 11111 234677888888765544333 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999999999999999999987643 7899999999999876 99999999999999999999987
No 384
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=339.98 Aligned_cols=197 Identities=24% Similarity=0.359 Sum_probs=165.2
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
.++++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 14799999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEccCCcCCCC-CHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 ---SIAYVSQTSWIQSG-SIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~~-ti~eNi~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.++.. |++||+.++. ..+ +++..++++.+++.+.. .+...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 38999999987764 9999998742 122 23445566666554322 34567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecC
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999988765544433 5899999999999998889999999999998775
No 385
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=344.68 Aligned_cols=205 Identities=24% Similarity=0.393 Sum_probs=171.4
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999963 469999999999999999999999999999999999864 5899998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++||+.++.. . . ++++++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 3899999999888899999997631 1 1 234455566666543332 12346678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+++.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIH-ELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999998876544 44457899999999999865 9999999999999999998
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=335.92 Aligned_cols=176 Identities=25% Similarity=0.383 Sum_probs=130.8
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCC-cccccchHHhcCCCC--
Q 000481 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVRTNLDPLG-- 1315 (1467)
Q Consensus 1239 ~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NLdp~~-- 1315 (1467)
+|..||.+||+||+|-||||++++|.|.++|++|+ ..+ -+++|=||-- .-|+|||++-|.--.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45667899999999999999999999999999998 222 3688999942 238999988773110
Q ss_pred CCCHHHHH-HHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000481 1316 LYSDDEIW-KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394 (1467)
Q Consensus 1316 ~~sd~ei~-~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~ 1394 (1467)
.+.+.-.+ +.++ |-.|+-.+...-.+|||||.||+++|-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 01111111 1122 22233333333457999999999999999999999999999999999999999999
Q ss_pred HHHHc--CCcEEEEEccCchhhcc-cCEEEEEeC--CEEEEecChhHHhc
Q 000481 1395 IRQEF--SNCTVITVAHRVPTVID-SDMVMVLSY--GKLLEYDEPSKLME 1439 (1467)
Q Consensus 1395 i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~--G~ivE~g~p~~Ll~ 1439 (1467)
||+.. .++|.++|-|++-.+.. +||++|.+. |+=-....|..+.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~ 547 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMRE 547 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHH
Confidence 98744 57899999999988865 999999975 33333445666654
No 387
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-36 Score=358.97 Aligned_cols=204 Identities=26% Similarity=0.360 Sum_probs=173.8
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eE
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i 660 (1467)
...++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 4689999999999999999999999999999999999999999999987 38
Q ss_pred EEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+||+|++-+|. .|+.|||.|+.. .+. ++..+.++..++.+..+ .+..+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999998886 599999999743 222 34455566666654333 455689999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||+.+|+++|||||||+||+...+.+.+.+.+... .|.|+|+|||+.+++. .||+|++|++|++++.|+++|+....
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999988765554433 4799999999999865 49999999999999999999998654
No 388
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=348.55 Aligned_cols=202 Identities=26% Similarity=0.448 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.++++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEccCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 ~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.++|++|++ .+++.|++||+.++.. +. .++..++++.+++.... ..++.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 289999998 5678899999987532 22 23455666666665433 2567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999887655444333 899999999999987 599999999999999999999865
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 389
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-36 Score=349.15 Aligned_cols=204 Identities=24% Similarity=0.423 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 24699999999999999999999999999999999999999999998866
Q ss_pred ----eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.|+|++|+| .+++.|++|||.|+.. .+. ++.+++++.+++..+. ...+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 279999997 4677899999987532 222 2345556666654222 1245679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999998876554433468999999999999865 99999999999999999998
Q ss_pred HHh
Q 000481 805 LLL 807 (1467)
Q Consensus 805 l~~ 807 (1467)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
No 390
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.2e-36 Score=360.24 Aligned_cols=201 Identities=24% Similarity=0.433 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 5799999999999999999999999999999999999999999999877 39
Q ss_pred EEEccCCcC-CCCCHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 661 AYVSQTSWI-QSGSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 661 ~yv~Q~~~l-~~~ti~eNi~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|||+|++.+ ++.|++||+.+++. + +.++++++++..++.+..+ ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999876 67899999998742 1 1234566667666654332 35678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
+|||||+++|+++||||||++||+.+...+.+.+.....+|+|+|++||+++.+.+ ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999876554444468999999999999865 99999999999999999999875
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 391
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.2e-36 Score=341.57 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=179.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999963 3599999999999999999999999999999999999999999999997 45799
Q ss_pred EeccCCcccc---cchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1295 IIPQEPTLFR---GSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1295 iIpQdp~LF~---gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
|+||+|.++. .|+++|+......+++++.++++.+++.+..... ...||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 3889987432234677899999999987665432 3469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
++|||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|++ ++++.|+++++.+ +..|.+++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 99999999999999999999999987543 7899999999999865 999999965 7999999999875 33454443
No 392
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.6e-36 Score=339.50 Aligned_cols=200 Identities=23% Similarity=0.385 Sum_probs=168.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 4699999999999999999999999999999999999999999998876 3899
Q ss_pred EccCCcC-CCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l-~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.+ +..|++||+.++.. ... ++..+.++..++.+ ....+..+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999877 56799999987532 222 22333444444432 23456779999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999998875544432 58999999999999988999999999999999999888654
No 393
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.4e-36 Score=329.41 Aligned_cols=172 Identities=27% Similarity=0.493 Sum_probs=156.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH-HHHhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL-KDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l-~~LR~~i 1293 (1467)
-|+++|++++| +|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999999 8999999999999999999999999999999999999999999999999998874 4568899
Q ss_pred EEeccCC----cccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1294 SIIPQEP----TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1294 ~iIpQdp----~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999853210 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998763 47899999999999987 999999999975
No 394
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-36 Score=343.10 Aligned_cols=205 Identities=28% Similarity=0.389 Sum_probs=170.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36899999999963 4699999999999999999999999999999999999987 489998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++|||.++.. .+ +++..++++.+++.+.+. + ....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHHH
Confidence 3899999999888999999998642 12 123445555555532221 1 1234678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+.+.+.+++.+.. ..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999998765444 4457899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88653
No 395
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-36 Score=341.12 Aligned_cols=197 Identities=28% Similarity=0.326 Sum_probs=168.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEc
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~ 664 (1467)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 4699999999999999999999999999999999999999999998876 489999
Q ss_pred cCCcCCC-CCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q 000481 665 QTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1467)
Q Consensus 665 Q~~~l~~-~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ill 742 (1467)
|++.++. .|++||+.++.. ..+++..++++..++.+..+ .+..+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998776 699999998642 12345666777776654332 4567999999999999999999999999
Q ss_pred EeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 743 FDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999988765544333 47999999999999865 8999999999999888754
No 396
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-36 Score=331.62 Aligned_cols=182 Identities=24% Similarity=0.428 Sum_probs=161.2
Q ss_pred eEEEEEEEEEeCCC----CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPN----APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~----~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999642 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhhccEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1289 LRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+|++++++||+|.+|.+ |+++|+... ..+ . .||+|||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~~~---~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------AKL---R---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------HHh---c---------------------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 999998410 000 0 6999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch-hhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVP-TVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~-ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|+|||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 4789999999997 4544 9999999999998765
No 397
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-36 Score=348.05 Aligned_cols=199 Identities=29% Similarity=0.387 Sum_probs=167.1
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 658 (1467)
.++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 34567777753 4689999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~-~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++ +.|++||+.++.. .+ ++++.++++.+++.+.+.. ...+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHH
Confidence 389999999887 4699999987531 11 2345667777777655543 445899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999998765544333 48999999999998765 899999999999999999998754
No 398
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.7e-36 Score=336.34 Aligned_cols=195 Identities=21% Similarity=0.353 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCCCCC-CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 000481 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 661 (1467)
++++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999964211 2699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|++|++.++. .|++||+.+... .. .++..++++..++.+.+ .++..+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 9999998877 499999976421 11 23445566666664433 24667899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999998876555444468999999999998875 8999999999998754
No 399
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-36 Score=339.45 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996421 12799999999999999999999999999999999999999999998765
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.++|+||++.++. .|++||+.++.. .+ .++..+.++..++.+.++ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 3899999998886 699999987532 22 223445555555543332 455789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999987655444343 8999999999999875 89999999999999999887753
No 400
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.2e-36 Score=335.59 Aligned_cols=190 Identities=36% Similarity=0.571 Sum_probs=160.4
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEccCC
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTS 667 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q~~ 667 (1467)
+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 36789999963 4699999999999999999999999999999999999999999999987 399999998
Q ss_pred cC---CCCCHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 668 WI---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 668 ~l---~~~ti~eNi~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
.+ ++.|++||+.++... .+++.+++++.+++.+.++ ....+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHH
Confidence 75 457999999886421 1235566777777765443 3456899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. ||+|++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999877555444468999999999999876 8999999886 55544
No 401
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.7e-36 Score=335.97 Aligned_cols=198 Identities=24% Similarity=0.439 Sum_probs=167.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4789999999642 25699999999999999999999999999999999999999999998876 3899
Q ss_pred EccCCcCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.++ +.|++||+.++.. .. .++++++++.+++.+..+ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999987421 22 234556666666654332 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
+.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999987644 444456999999999999875 899999999999999988764
No 402
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.2e-36 Score=339.23 Aligned_cols=199 Identities=23% Similarity=0.409 Sum_probs=166.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 4699999999999999999999999999999999999999999998865 38
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|++|++.++.. |++||+.++.+ ... ++.++.++..++.+ .......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 999999988775 99999987532 121 22334444444432 223566799999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999876554444468999999999988765 89999999999999999888753
No 403
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.4e-36 Score=327.01 Aligned_cols=177 Identities=32% Similarity=0.511 Sum_probs=161.0
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
|++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4599999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000481 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376 (1467)
Q Consensus 1297 pQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiL 1376 (1467)
|| +++.+++.++... ...+||+|||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7788888765443 2357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1377 DEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1377 DEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987654 7899999999999855 9999999999998764
No 404
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.4e-36 Score=340.74 Aligned_cols=203 Identities=29% Similarity=0.425 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC-----CcEEEEcC-----------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g----------- 658 (1467)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 36999999999999999999999999999999999999998 99998865
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|+||++.+++.|++||+.++.. .+. ++..++++..++.++++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999999988999999987532 121 23445566666653221 1223567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
|++||||++.+|+++||||||++||+++...+++.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI-QELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999887644 444445899999999998865 899999999999999999887
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
No 405
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.5e-36 Score=338.20 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=168.5
Q ss_pred EEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHHh
Q 000481 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
++|+||+++|... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. ..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhc
Confidence 6799999999654 3679999999999999999999999999999999999999 999999999998853 4678
Q ss_pred hccEEeccCCccccc-chHHhcCCC---C--CCCHH-----HHHH-HHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLDPL---G--LYSDD-----EIWK-ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLdp~---~--~~sd~-----ei~~-aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
++++++||++.+|.+ |+++|+... . ...++ .+.+ .++..++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 999999999999988 999999521 1 11111 1122 344443322 22234467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCc-hhh-cccCEEEEEeCCEEEEec
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRV-PTV-IDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl-~ti-~~~DrIlVl~~G~ivE~g 1432 (1467)
||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|++ ..+ .-||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998754 478999999998 355 459999999999999876
No 406
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.7e-36 Score=335.10 Aligned_cols=192 Identities=30% Similarity=0.431 Sum_probs=162.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 478999999964 4699999999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++.++. .|++||+.++.. ... +++.++++..++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998875 699999987532 222 23445555555554333 455789999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998775544443 48999999999998876 8999999999998865
No 407
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.4e-36 Score=350.06 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=169.6
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 660 (1467)
..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 35899999999963 4699999999999999999999999999999999999999999999876 49
Q ss_pred EEEccCCcCC-CCCHHHHHhcC-C--CCCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQ-SGSIRDNILYG-K--PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~-~~ti~eNi~~g-~--~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|+||++.++ ..|++||+.+. . ..+.+ +.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999999877 46999999752 1 12222 233444544443322 2455689999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999887655544568999999999999875 999999999999999999988643
No 408
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.4e-36 Score=342.57 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCcceEEECCeeCCCCCHHHHhh-
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAGGSILIDGVDICSMGLKDLRV- 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl--~~~~~G~I~IDG~dI~~i~l~~LR~- 1291 (1467)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999963 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEeccCCccccc-chHHhcCCC-C---------CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1292 KLSIIPQEPTLFRG-SVRTNLDPL-G---------LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~g-TIR~NLdp~-~---------~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
.++++||+|.+|.+ |+++|+... . ..+ ++.+.++|+.+++.+.. ++..+. ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF------LSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh------hccccc---cCCCHH
Confidence 58899999999987 788887421 1 011 13456677777765211 222222 249999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc--cCEEEEEeCCEEEEecC
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~--~DrIlVl~~G~ivE~g~ 1433 (1467)
||||++||||++++|+||||||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998764 47999999999999875 89999999999999999
Q ss_pred hhHH
Q 000481 1434 PSKL 1437 (1467)
Q Consensus 1434 p~~L 1437 (1467)
|+++
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9844
No 409
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-36 Score=345.20 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+|. +++.|+.|||.++.. ... ++++++++.+++..... .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 677899999987531 222 23456666666654333 34578999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999987655444333 8999999999999988999999999999999999988754
No 410
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-36 Score=327.92 Aligned_cols=181 Identities=24% Similarity=0.341 Sum_probs=160.0
Q ss_pred eEEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHHHh
Q 000481 1215 RIELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
.|+++|++++|.++ ..++|+|+||+|++||.+||+|++|||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999642 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred hccEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++++++||+|.+|.+ |+++|+.. . ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~-~--------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRF-S--------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHH-H--------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999998875 99999851 0 0000 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh-h-cccCEEEEEeC-CEEEEec
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPT-V-IDSDMVMVLSY-GKLLEYD 1432 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVl~~-G~ivE~g 1432 (1467)
+|++|+|||||+++|.++.+.+.+.|++.. +++|+|+|+|+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998754 47999999999984 4 56999999999 9999876
No 411
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.9e-36 Score=320.61 Aligned_cols=164 Identities=29% Similarity=0.405 Sum_probs=150.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+ +++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5799999999643 45999999999999999999999999999999999999999999999982 68999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.++++|+++|+... ....||+|||||++||||++++|++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999521 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1376 LDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
|||||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999876 689999999999888899999998863
No 412
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.3e-36 Score=353.45 Aligned_cols=202 Identities=26% Similarity=0.405 Sum_probs=170.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 660 (1467)
..|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999963 4699999999999999999999999999999999999999999999877 39
Q ss_pred EEEccCCcCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~-~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
||+||++.++ ..|++||+.+... .+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999999875 5699999985221 222 2233444444443221 2456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|++++|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999987665544568999999999999976 999999999999999999998653
No 413
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-36 Score=341.03 Aligned_cols=203 Identities=28% Similarity=0.398 Sum_probs=167.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999742 4699999999999999999999999999999999999999999998876 389
Q ss_pred EEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|++|++.++. .|++||+.++.. .+. ++..++++..++.. .....+.+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999998875 699999987532 221 23344444444432 011235678999999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999988765554433 38999999999998765 899999999999999998887543
No 414
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.4e-36 Score=334.87 Aligned_cols=193 Identities=24% Similarity=0.345 Sum_probs=164.8
Q ss_pred EEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH----HHHhhcc
Q 000481 1218 LRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRVKL 1293 (1467)
Q Consensus 1218 f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l----~~LR~~i 1293 (1467)
++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 359999999999999999999999999999999999999999999999999875542 2467899
Q ss_pred EEeccCCcccc-cchHHhcCCC---CC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL---GL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~---~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++||+|.+|. .|+++|+... .. ..++++.++++..++.+.... . ..+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-------K----IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-------C----hhhCCHHHHHHHHHHH
Confidence 99999999997 6999999521 11 124567788888887554322 2 3469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEE
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVL 1423 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl 1423 (1467)
||+++|++|||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998764 378999999999988889999986
No 415
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-36 Score=346.77 Aligned_cols=205 Identities=20% Similarity=0.357 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996432 14699999999999999999999999999999999999999999998866
Q ss_pred ----eEEEEccCC--cCCCCCHHHHHhcCCC---CCHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.|+|++|++ .+++.|++|||.++.. .+.++ .+++++..++.... ...+..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 289999997 5778899999987532 22222 33344444443211 2356678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999877655444458999999999998865 89999999999999999988
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 7653
No 416
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-36 Score=342.14 Aligned_cols=206 Identities=28% Similarity=0.410 Sum_probs=172.7
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC--------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g-------- 658 (1467)
...++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356899999999963 469999999999999999999999999999999999986 5899998765
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.++|++|++.++..|++||+.++.. .+. ++..++++.+++..++. ...+++..+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 3899999998888999999997632 222 34455666666543332 2234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999887654443 457899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000481 803 QELLLA 808 (1467)
Q Consensus 803 ~~l~~~ 808 (1467)
+++...
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 888653
No 417
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-36 Score=343.91 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=172.5
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..++++|++++|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999632 35799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|+| .+++.|++|||.++.. ++.+ +..++++..++.+.++ .+..+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 89999998 4567899999998632 2332 3455566666655443 4557999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||+|++|++|++.+.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988755544444 5899999999999888999999999999999998887653
No 418
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.4e-36 Score=337.98 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 659 (1467)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 679999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|++.++. .|++||+.++.. .+. +++.++++..++.+.+ ..+..+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 899999988775 699999988631 222 2334455555544333 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|++++|||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999876544433458999999999999875 899999999999999999887653
No 419
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-36 Score=334.77 Aligned_cols=200 Identities=25% Similarity=0.344 Sum_probs=169.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHHHHhh
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLKDLRV 1291 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~~LR~ 1291 (1467)
+++ |++++|+.. .+ |+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 899999642 24 99999999 99999999999999999999999999999999999998643 3446788
Q ss_pred ccEEeccCCcccc-cchHHhcCCC-CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1292 KLSIIPQEPTLFR-GSVRTNLDPL-GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~-gTIR~NLdp~-~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++++||++.+|. .|+++|+... ..+ .++++.++++..++.+... ....+||+|||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHH
Confidence 9999999999986 4999999521 111 2345677788777654432 234579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999987643 7899999999999965 9999999999999875
No 420
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-36 Score=345.26 Aligned_cols=204 Identities=22% Similarity=0.350 Sum_probs=173.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCC---cEEEEcC-----------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g----------- 658 (1467)
..++++|++|+|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999643 2469999999999999999999999999999999999999988 8998876
Q ss_pred --eEEEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|+|. +++.|++|||.|+.. .+. +++.++++.+++.+... ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 3899999984 567899999998632 222 34556677777765443 3456999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999998775544433 389999999999999889999999999999999998876
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
No 421
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=344.11 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=174.2
Q ss_pred cEEEEeEEEEeCCCC---CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------
Q 000481 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 658 (1467)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 588999999996421 24699999999999999999999999999999999999999999998875
Q ss_pred --eEEEEccCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~~--l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|+|. ++..|+.||+.|+.. .+ +++++++++.+++.+.++. ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 3899999984 566799999998632 22 2446667777777655543 446899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998765444333 489999999999998889999999999999999999986
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 422
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-36 Score=347.16 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=167.7
Q ss_pred CcEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------
Q 000481 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 658 (1467)
+.|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999996432 13599999999999999999999999999999999999999999998755
Q ss_pred ------eEEEEccCCc--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 ------SIAYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 ------~i~yv~Q~~~--l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.|+|++|+|. +++.|++||+.|+.. ...+ +..+.++..++.. + .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------D---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-------h---HhcCChhhCCHH
Confidence 3899999984 567899999998632 2222 2223333333311 1 123567799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecC
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 801 (1467)
||||++||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999988765544333 48999999999998765 89999999999999999
Q ss_pred hHHHHhc
Q 000481 802 YQELLLA 808 (1467)
Q Consensus 802 ~~~l~~~ 808 (1467)
++++...
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887653
No 423
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.8e-36 Score=334.46 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=160.0
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68899999996421 24699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEccCCcCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~-~ti~eNi~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.++|++|++.++. .|++||+.++. ..+ .++..+.++.+++.+.+ .....+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 3899999998875 69999998742 122 22344555555554333 245578999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEe
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1467)
+||||++.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999998765544333 479999999999998889999999999985
No 424
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-36 Score=331.91 Aligned_cols=192 Identities=28% Similarity=0.443 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------eEEEEcc
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1467)
++++|+++.|+. +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 4699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
++.++. .|++||+.++.. .. +++..+.++..++.... ..+..+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998776 599999987431 11 23344555555554433 245678999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999887655444468999999999999865 8999999999998754
No 425
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.4e-36 Score=337.50 Aligned_cols=204 Identities=22% Similarity=0.347 Sum_probs=169.3
Q ss_pred ceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CcceEEECCeeCCCCCHHHHhhccEEeccCCc-ccc--
Q 000481 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP----AGGSILIDGVDICSMGLKDLRVKLSIIPQEPT-LFR-- 1304 (1467)
Q Consensus 1232 vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~----~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-- 1304 (1467)
+|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998764 223468999999995 343
Q ss_pred cchHHhcC-C---CCCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000481 1305 GSVRTNLD-P---LGLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377 (1467)
Q Consensus 1305 gTIR~NLd-p---~~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLD 1377 (1467)
-|+.+|+. + .+.. .++++.++++.+++.+. ++.......+||+|||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 48888762 1 1111 23457888888887631 11123334579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCChhH
Q 000481 1378 EANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1378 EaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~ 1445 (1467)
|||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.. +...|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999987643 7899999999999965 99999999999999999999987 344444
No 426
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-35 Score=343.99 Aligned_cols=202 Identities=26% Similarity=0.436 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 661 (1467)
.++++|++..|.. ++.+|+||||+|++|+++|++||||||||||+++|+|++.|++|+|.+.| +||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999963 25799999999999999999999999999999999999999999999987 499
Q ss_pred EEccCCcCC-CCCHHHHHhcCC-----C--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQ-SGSIRDNILYGK-----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~-~~ti~eNi~~g~-----~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|+||+|.++ ..|++||+.|-. + .++++.+++++..+|.++- ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999765 569999999732 2 2356788888888876522 24567899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCC-cEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|..+|++|||||||++||+..+..+++.+.....+| +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999999999887666666666 799999999999987 999999999999999998887543
No 427
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=340.83 Aligned_cols=203 Identities=27% Similarity=0.406 Sum_probs=170.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
+.++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46899999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ------------eEEEEccCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000481 659 ------------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1467)
Q Consensus 659 ------------~i~yv~Q~~~l~~-~ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 717 (1467)
.++|+||++.++. .|++||+.++. ..+. ++..+.++..++...+ .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 3899999998886 59999998742 1222 2334445554443322 12456
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 718 ~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999886554444458999999999999986 899999999999
Q ss_pred eEecChHHHHhc
Q 000481 797 TQSGNYQELLLA 808 (1467)
Q Consensus 797 ~~~G~~~~l~~~ 808 (1467)
++.|+++++...
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999887643
No 428
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.1e-35 Score=342.46 Aligned_cols=202 Identities=23% Similarity=0.322 Sum_probs=169.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
..++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999953 4699999999999999999999999999999999999999999998875
Q ss_pred --eEEEEccCCcCCCC-CHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTSWIQSG-SIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~-ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.++.. |++||+.++. ..+. ++..+.++.+++.+.. ..+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHH
Confidence 38999999988875 9999998742 1222 2333445555543322 24567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999988765544333 37999999999999876 899999999999999999998
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
No 429
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.5e-37 Score=315.04 Aligned_cols=214 Identities=26% Similarity=0.426 Sum_probs=181.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVK 1292 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~ 1292 (1467)
+.+..+|+..+|. ..+|.+||||++++||.||+.||+||||||.+.++.|++.|++|+|.+||.||+.++.+. -|-.
T Consensus 3 ~~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4688899999995 346999999999999999999999999999999999999999999999999999999987 4778
Q ss_pred cEEeccCCccccc-chHHhcCCCCCCCH---------HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPLGLYSD---------DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~~~~sd---------~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
|||+||||.+|.+ |+++||...-+..+ +++.+-|+..++.. .-...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----------lr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----------LRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----------HhcCcccccccchHHHHH
Confidence 9999999999988 99999953322222 22334444444432 223446789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch-hhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVP-TVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~-ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||||..+|+.++||||.|++|+-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|+|+.+.
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998754 4667888889875 5556999999999999999999999973
No 430
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=300.22 Aligned_cols=198 Identities=25% Similarity=0.415 Sum_probs=175.3
Q ss_pred EeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCccc
Q 000481 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1467)
Q Consensus 1224 ~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1303 (1467)
+|.....++|+|+||++++||.++|.||||||||||++.+.-+..|++|.+++.|.|+++++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 56556667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhcC-CCC----CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000481 1304 RGSVRTNLD-PLG----LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378 (1467)
Q Consensus 1304 ~gTIR~NLd-p~~----~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDE 1378 (1467)
.+||.+||- |+. ..+.+.-.+-|+++++.+.+- ..+..+||||||||++|+|-|---|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L----------~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL----------TKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhh----------cchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 999999984 442 234455667778887766542 23346799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchh-hcccCEEEEEeCCEEEEe
Q 000481 1379 ANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPT-VIDSDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1379 aTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~t-i~~~DrIlVl~~G~ivE~ 1431 (1467)
+||+||..+.+.|.+.|.+++ ++..++.|||+-+. +..+||++-+-.|++-|.
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 999999999999999999887 47899999999988 888999999999887543
No 431
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=341.10 Aligned_cols=203 Identities=22% Similarity=0.333 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999643 24699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+|. ++..|+++|+.++.. ... ++..++++..++.+.. ..+..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999985 456799999998632 222 2334455555554322 245678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998765544333 37999999999999888999999999999999999988654
No 432
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.5e-36 Score=353.39 Aligned_cols=188 Identities=33% Similarity=0.474 Sum_probs=162.3
Q ss_pred CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------------eEEEEccCCc
Q 000481 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1467)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------------~i~yv~Q~~~ 668 (1467)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999876 3999999999
Q ss_pred CCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 669 IQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 669 l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
+++ .|++||+.++.. .+ +++..++++..+|.+..+ ....+|||||||||+|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 886 699999998742 22 234455666666654433 34568999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhc
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+|||||||+||+.+.+.+.+.+..... .++|+|+|||+++++. .||+|++|++|++++.|+++++...
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999876665444 3899999999999975 5999999999999999999999765
No 433
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=334.20 Aligned_cols=200 Identities=23% Similarity=0.343 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC-CCHHH----HHHHHHHh-cchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP-MDKAR----YDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~-~~~~~----~~~~~~~~-~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
++|++|++.++. .|++||+.++.. .+.++ ..++++.. .+.+. ...+..+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHHH
Confidence 899999998877 599999998643 12222 22222222 12111 12456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999877555444468999999999998765 89999999999999999998864
No 434
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=355.04 Aligned_cols=222 Identities=20% Similarity=0.400 Sum_probs=186.5
Q ss_pred eEEEEEEEEEeCCCCC--cceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC----cceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA----GGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~--~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~----~G~I~IDG~dI~~i~l~~ 1288 (1467)
-++++|++..|..... .+++||||+|++||.+||||.|||||||++++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6999999999964432 4999999999999999999999999999999999999887 899999999999999876
Q ss_pred Hh----hccEEeccCCc-cccc--chHHhcC----CC----CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1289 LR----VKLSIIPQEPT-LFRG--SVRTNLD----PL----GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1289 LR----~~i~iIpQdp~-LF~g--TIR~NLd----p~----~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
+| ++|++|||||. .++- ||.+-+. -. .+...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 67999999995 4543 5544442 11 11124567788889988665443 1123468
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
|||||||+.||+||..+|++||+||||.+||..|.+.|.+.|++.. .|.++|+|||++..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999765 58899999999999987 99999999999999
Q ss_pred ecChhHHhc-cCChhH
Q 000481 1431 YDEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1431 ~g~p~~Ll~-~~~~f~ 1445 (1467)
.|+++++++ +.-.|-
T Consensus 236 ~G~~~~i~~~p~hpYT 251 (539)
T COG1123 236 TGPTEEILSNPQHPYT 251 (539)
T ss_pred ecCHHHHHhccCCccc
Confidence 999999998 444443
No 435
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-35 Score=338.54 Aligned_cols=199 Identities=27% Similarity=0.415 Sum_probs=169.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCcCCCC-CHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 662 YVSQTSWIQSG-SIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 662 yv~Q~~~l~~~-ti~eNi~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
|++|++.++.. |+.||+.++.. + +.++..++++.+++.+..+ .....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999887765 99999998631 1 1234455666666654333 456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999998876554444458999999999999875 89999999999999999988764
No 436
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=1.2e-34 Score=387.08 Aligned_cols=209 Identities=24% Similarity=0.278 Sum_probs=148.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHH---------HHhcccCCCc----c----eEEEC
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS---------ALFRLVEPAG----G----SILID 1277 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~---------~L~rl~~~~~----G----~I~ID 1277 (1467)
.++++|++. .+|+|+|++|++||.+||+|++|||||||++ .|.+...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2799999999999999999999999999999 4444322211 1 24666
Q ss_pred CeeCCCCC----H------HHHhh---------ccE-----EeccC------------------C---------------
Q 000481 1278 GVDICSMG----L------KDLRV---------KLS-----IIPQE------------------P--------------- 1300 (1467)
Q Consensus 1278 G~dI~~i~----l------~~LR~---------~i~-----iIpQd------------------p--------------- 1300 (1467)
-.+|..-+ . +++|+ +.+ +.+|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 65554321 1 14551 111 12221 1
Q ss_pred -----ccccc-chHHhcCCCCC------CCHHHHHH---HHHHcCCchHHhhCCCCcccc-cccCCCCCChhHHHHHHHH
Q 000481 1301 -----TLFRG-SVRTNLDPLGL------YSDDEIWK---ALEKCQLKTTISSLPNKLDSS-VSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1301 -----~LF~g-TIR~NLdp~~~------~sd~ei~~---aL~~~~l~~~i~~lp~gLdt~-v~e~G~nLS~GQrQrl~LA 1364 (1467)
+.+.+ ||.|||+.... .+.+++.+ +|+.+ ||+.. .+....+||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 13333 67777753210 01223333 23333 34332 4555668999999999999
Q ss_pred HHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEEe------CCEEEEecCh
Q 000481 1365 RVLL---KRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVLS------YGKLLEYDEP 1434 (1467)
Q Consensus 1365 RAlL---r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~------~G~ivE~g~p 1434 (1467)
|||+ ++|++|||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998753 4789999999999998899999996 7999999999
Q ss_pred hHHhccC
Q 000481 1435 SKLMETN 1441 (1467)
Q Consensus 1435 ~~Ll~~~ 1441 (1467)
+++.+..
T Consensus 902 eel~~~~ 908 (1809)
T PRK00635 902 EELIHLH 908 (1809)
T ss_pred HHHHhcc
Confidence 9998743
No 437
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-35 Score=334.47 Aligned_cols=198 Identities=29% Similarity=0.478 Sum_probs=165.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4699999999999999999999999999999999999999999998875 38
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCCC---C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKPM---D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~~---~-~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++|++.++.. |++||+.++... . .+.+.++++..+. +. ....++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~-------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LK-------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HH-------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999988765 999999876321 1 2233444444331 11 1123567789999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998765544433 37999999999999886 899999999999999999886
No 438
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=340.44 Aligned_cols=206 Identities=23% Similarity=0.381 Sum_probs=172.4
Q ss_pred CCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC-------
Q 000481 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1467)
Q Consensus 591 ~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g------- 658 (1467)
.+..|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3457999999999963 4699999999999999999999999999999999999975 899998766
Q ss_pred --------eEEEEccCCcCCCCCHHHHHhcCCC---C--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccC
Q 000481 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1467)
Q Consensus 659 --------~i~yv~Q~~~l~~~ti~eNi~~g~~---~--~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 721 (1467)
.++|++|++.+++.|++||+.++.. . . .+++.++++.+++.+.+. +..++.+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999999888899999997531 1 1 233455666666644322 12245678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 722 GGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI-DELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999887644 444457899999999999865 8999999999999999
Q ss_pred ChHHHHh
Q 000481 801 NYQELLL 807 (1467)
Q Consensus 801 ~~~~l~~ 807 (1467)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988764
No 439
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-35 Score=339.27 Aligned_cols=201 Identities=27% Similarity=0.433 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999963 4699999999999999999999999999999999999999999997654
Q ss_pred ------eEEEEccCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 ------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~-~ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.++|++|++.++. .|++||+.++. ..+. ++..+.++..++... ....+.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 3899999998775 69999998742 1222 223334444444321 23567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999876544444458999999999999875 899999999999999999
Q ss_pred HHHHhc
Q 000481 803 QELLLA 808 (1467)
Q Consensus 803 ~~l~~~ 808 (1467)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 887643
No 440
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.6e-35 Score=348.44 Aligned_cols=207 Identities=24% Similarity=0.375 Sum_probs=171.4
Q ss_pred CcEEEEeEEEEeCCCC----------CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----
Q 000481 593 RSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~----------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 658 (1467)
.-++++|++++|+.+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4589999999996321 24689999999999999999999999999999999999999999998865
Q ss_pred ------------eEEEEccCCc--CC-CCCHHHHHhcCC-----CCCH----HHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000481 659 ------------SIAYVSQTSW--IQ-SGSIRDNILYGK-----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIG 714 (1467)
Q Consensus 659 ------------~i~yv~Q~~~--l~-~~ti~eNi~~g~-----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig 714 (1467)
+|+||+|+|. ++ ..||.|||.++. ..+. ++..+.++.+++.++. ..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------IN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hc
Confidence 4999999983 44 579999997531 2332 2334555555553221 23
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEe
Q 000481 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE 792 (1467)
Q Consensus 715 ~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1467)
....+|||||||||+||||++.+|+++|+||||++||+.+...+.+.+..... .|.|+|+|||+++.+.. ||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 45679999999999999999999999999999999999999998875544433 38999999999999976 99999999
Q ss_pred CCeEeEecChHHHHhcC
Q 000481 793 GGQITQSGNYQELLLAG 809 (1467)
Q Consensus 793 ~G~i~~~G~~~~l~~~~ 809 (1467)
+|+|++.|+.+++....
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 99999999999998653
No 441
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-35 Score=340.93 Aligned_cols=202 Identities=26% Similarity=0.411 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+||+|++ .+++.|++||+.++.. .+. +++++.++.+++.+.+. .....||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 9999997 3677899999987532 333 23556666666665443 34568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999988765544433 3899999999999986 5899999999999999999998754
No 442
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=355.34 Aligned_cols=188 Identities=27% Similarity=0.414 Sum_probs=161.4
Q ss_pred CcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcCCC-C
Q 000481 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS-G 672 (1467)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l~~-~ 672 (1467)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999998865 4899999998875 5
Q ss_pred CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q 000481 673 SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1467)
Q Consensus 673 ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDe 745 (1467)
|++||+.++.. .+ .++..++++.+++.+..+ ....+||||||||++||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 22 234556666666654443 3456899999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999998776554433 48999999999998765 8999999999999999999987653
No 443
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.4e-35 Score=332.89 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=165.5
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..|+++|+++.|+. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 35899999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++|++.+++.|++||+.++.. .++++..+.++.+++.+ +.....+.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999998899999987421 12233445555555532 122456789999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEe-CCeEeEecChH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE-GGQITQSGNYQ 803 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~G~~~ 803 (1467)
+++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999888765444333 4889999999999998899999994 67777888875
No 444
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=342.00 Aligned_cols=201 Identities=26% Similarity=0.452 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 659 (1467)
++++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|+|.++|.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 24699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
|+|++|++ .+++.|++|||.++.. ... ++..++++.+++....+ ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 89999997 5678899999987631 222 33455666666543222 3467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999876555444458999999999999875 999999999999999999988653
No 445
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.2e-35 Score=339.45 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCC------CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
.++++|++|+|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 135799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEccCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCcc
Q 000481 659 -------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1467)
Q Consensus 659 -------~i~yv~Q~~~--l~-~~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 720 (1467)
.|+|++|++. ++ ..|++||+.++. .++ +++..++++..++... ....++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 3999999973 33 479999997532 122 2234445555554321 123567799
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeE
Q 000481 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1467)
Q Consensus 721 SGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1467)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988765544433 38999999999999975 89999999999999
Q ss_pred ecChHHHHhcC
Q 000481 799 SGNYQELLLAG 809 (1467)
Q Consensus 799 ~G~~~~l~~~~ 809 (1467)
.|+++++....
T Consensus 232 ~g~~~~~~~~~ 242 (265)
T TIGR02769 232 ECDVAQLLSFK 242 (265)
T ss_pred ECCHHHHcCCC
Confidence 99999987643
No 446
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-35 Score=329.65 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
|+++|++|.|+. .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999963 36999999999999 9999999999999999999999999999999876 3899
Q ss_pred EccCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~~-ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.++.. |++||+.+... .+ +++.+++++.+++.+..+ ....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999988765 99999987421 11 234556677777754433 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
+++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLS-ELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999876544 43346999999999999875 8999999999998765
No 447
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=338.20 Aligned_cols=200 Identities=21% Similarity=0.340 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|+++.|+. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 4799999999999999999999999999999999999999999999876 2
Q ss_pred EEEEccCCcCCCC-CHHHHHhcCCC----------------CC------HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000481 660 IAYVSQTSWIQSG-SIRDNILYGKP----------------MD------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 660 i~yv~Q~~~l~~~-ti~eNi~~g~~----------------~~------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 716 (1467)
++|++|++.++.. |++||+.++.. .. .+++.+.++..++. .....+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 7899999988874 99999998631 00 01222333333332 223467
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCC
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1467)
..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999987655544444 7899999999999866 8999999999
Q ss_pred eEeEecChHHHHh
Q 000481 795 QITQSGNYQELLL 807 (1467)
Q Consensus 795 ~i~~~G~~~~l~~ 807 (1467)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999888754
No 448
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=340.79 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 659 (1467)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEccCCc--CCCCCHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~--l~~~ti~eNi~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|++. ++..|+.||+.++. ..+. +++.++++..++....+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 899999985 56678999998752 1222 23344555555543322 3567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999876555444468999999999999865 999999999999999999887654
No 449
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.5e-35 Score=337.36 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=175.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++ .+|+|+||+|++||.+||+|++|||||||+++|.|+++ .+|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 356778775 27999999999999999999999999999999999986 49999999999998888888889999
Q ss_pred eccCCc-ccccchHHhcCCCCC--CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1296 IPQEPT-LFRGSVRTNLDPLGL--YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1296 IpQdp~-LF~gTIR~NLdp~~~--~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
+||+|. .+..|+++|+..... .+ ++++.++++..++.+.... ....||+|||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence 999985 456799999963211 11 2356677887777544322 23579999999999999999
Q ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1369 K-------RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1369 r-------~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+ +|++|||||||++||+.+.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998764 47899999999998755 99999999999999999999865
No 450
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-35 Score=328.64 Aligned_cols=190 Identities=29% Similarity=0.447 Sum_probs=161.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
|+++|++++|+. .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 478999999963 22 399999999999999999999999999999999999999999887 38999
Q ss_pred ccCCcCCCC-CHHHHHhcCCC--C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQSG-SIRDNILYGKP--M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~~-ti~eNi~~g~~--~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++.++.. |++||+.++.. . ++++..++++.+++.+.... ...+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHHh
Confidence 999998864 99999987642 1 23356667777777655543 34589999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998765544333 48999999999999876 8999999999998754
No 451
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=339.28 Aligned_cols=205 Identities=22% Similarity=0.365 Sum_probs=170.4
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999987 6899998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|++|++.++..|++||+.++... . +++..++++.+++...++ .....+..+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 38999999998888999999986432 1 233444555555432222 2234567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeC-----------C
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-----------G 794 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-----------G 794 (1467)
|++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||++++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETM-HELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 999999999999999999999999999999987644 444457899999999998865 899999996 6
Q ss_pred eEeEecChHHHHhc
Q 000481 795 QITQSGNYQELLLA 808 (1467)
Q Consensus 795 ~i~~~G~~~~l~~~ 808 (1467)
++++.|+.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 78999999988654
No 452
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-35 Score=331.41 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 4699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++. .|++||+.++.. .+ +++..+.++.+++.+..+ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 3899999998876 599999987532 12 234555666666654433 3446899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
|||++.+|+++||||||++||+++.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999876555444468999999999999886 899999999974
No 453
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=334.85 Aligned_cols=200 Identities=21% Similarity=0.377 Sum_probs=167.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4789999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|++.++. .|++||+.++.. .+. +++.+.++..++.. ....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 899999998776 599999987532 122 22333444433322 2345678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998876444333468999999999988765 89999999999999999988764
No 454
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-35 Score=336.12 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=169.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 4699999999999999999999999999999999999999999999876 289
Q ss_pred EEccCCcC-CCCCHHHHHhcCCC-C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l-~~~ti~eNi~~g~~-~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|++|++.+ ++.|++||+.++.. . .+++.+++++..++....+ ....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999877 67799999988632 1 1234455666666654332 4567999999999999999
Q ss_pred Hh------cCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 734 VY------NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 734 l~------~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++ .+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999998876554443 458999999999999874 999999999999999999887
Q ss_pred Hh
Q 000481 806 LL 807 (1467)
Q Consensus 806 ~~ 807 (1467)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 64
No 455
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.7e-35 Score=337.73 Aligned_cols=211 Identities=19% Similarity=0.281 Sum_probs=169.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHHHh-hc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKDLR-VK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~LR-~~ 1292 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999963 35999999999999999999999999999999999995 69999999999999888776654 57
Q ss_pred cEEeccCCccccc-chHHhc-------CCCCC---CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNL-------DPLGL---YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NL-------dp~~~---~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
++++||+|.++.. |..+++ ..+.. .. ++.+.+.++..++ |+++.+... ..+|||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC--CCCCCHHH
Confidence 9999999987764 433332 21110 01 1122233443333 322222111 13699999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhcc--cCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS-NCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~~--~DrIlVl~~G~ivE~g~p 1434 (1467)
|||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999887543 6899999999999987 899999999999999998
Q ss_pred hHH
Q 000481 1435 SKL 1437 (1467)
Q Consensus 1435 ~~L 1437 (1467)
++.
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 855
No 456
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=339.40 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=170.5
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46899999999963 4699999999999999999999999999999999999999999999877 3
Q ss_pred EEEEccCCcCC-CCCHHHHHhcCCC--------C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 660 IAYVSQTSWIQ-SGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 660 i~yv~Q~~~l~-~~ti~eNi~~g~~--------~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
++|++|++-++ ..|+.||+.++.. . .+++..++++.+++.+.++ ....+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHHH
Confidence 89999997654 4599999997631 1 1234566777777755443 3445899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999988765544333 38999999999999865 899999999999999999887
Q ss_pred Hh
Q 000481 806 LL 807 (1467)
Q Consensus 806 ~~ 807 (1467)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 64
No 457
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.1e-35 Score=319.29 Aligned_cols=166 Identities=34% Similarity=0.593 Sum_probs=151.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~y 662 (1467)
++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4789999999643 246999999999999999999999999999999999999999999998872 899
Q ss_pred EccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q 000481 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1467)
Q Consensus 663 v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ill 742 (1467)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 45899999999999999999999999
Q ss_pred EeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEec
Q 000481 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1467)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G 800 (1467)
|||||++||+++.+.+++.+.+. .+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999887655443 4689999999999999889999999999998754
No 458
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.2e-35 Score=332.37 Aligned_cols=195 Identities=28% Similarity=0.380 Sum_probs=164.2
Q ss_pred cEEEEeEEEEeCCCCC-CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
.++++|++++|+.+.. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974321 3599999999999999999999999999999999999999999998765
Q ss_pred ---eEEEEccCCcCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 ---SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~-~ti~eNi~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.++. .|++||+.++. ..+ ++++.+.++.+++.+.++ ....+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3899999998876 59999998642 111 235566677777765444 3446899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999988765554433 37899999999999888999999999999753
No 459
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.2e-35 Score=331.36 Aligned_cols=188 Identities=23% Similarity=0.421 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999998765
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++. .|++||+.++.. .+ ++++++.++..++.+.+. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 3899999998875 699999987521 22 235566666666655443 2346899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
|||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999877555444468999999999999886 89999999985
No 460
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-35 Score=335.24 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=167.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
-++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEccCCcCCCC-CHHHHHhcCCCC---------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 660 IAYVSQTSWIQSG-SIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 660 i~yv~Q~~~l~~~-ti~eNi~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
++|++|++.++.. |++||+.++... ++++..+.++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 8999999988875 999999885321 1122333344333322 234567799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999987644 444457899999999999875 999999999999999999
Q ss_pred HHHHh
Q 000481 803 QELLL 807 (1467)
Q Consensus 803 ~~l~~ 807 (1467)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88754
No 461
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=338.12 Aligned_cols=204 Identities=25% Similarity=0.427 Sum_probs=169.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCC---CCC--CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~---~~~--~~G~i~~~g---------- 658 (1467)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5889999999963 4699999999999999999999999999999999996 454 589998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|+||++.+++.|++||+.++.. .+ +++..++++.+++.+++. +...+.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999999888899999987532 11 123445556565543332 223467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+ ..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE-LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999998765544 3567999999999999865 89999999999999999999
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8653
No 462
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-35 Score=330.09 Aligned_cols=188 Identities=31% Similarity=0.497 Sum_probs=157.7
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEE
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 662 (1467)
+++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 24699999999999999999999999999999999999999999999876 3899
Q ss_pred EccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 663 VSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 663 v~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
++|++. +++.|++||+.++.. .+. ++..+.++..++.+.++ .+..+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999983 567899999987532 222 23445566666654333 4557899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999887655444458999999999999987 99999999985
No 463
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=338.82 Aligned_cols=207 Identities=24% Similarity=0.365 Sum_probs=173.8
Q ss_pred CCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC-------
Q 000481 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1467)
Q Consensus 591 ~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g------- 658 (1467)
....|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3457999999999953 579999999999999999999999999999999999996 5899998765
Q ss_pred --------eEEEEccCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 659 --------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
.++|++|++.++..|++|||.++.. .++ +++.++++.+++.+++. +..++.+.+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCH
Confidence 3899999999988999999998632 122 33455566666644332 234567889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecC
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 801 (1467)
|||||++||||++++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF-ELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876544 44457899999999999865 99999999999999999
Q ss_pred hHHHHhc
Q 000481 802 YQELLLA 808 (1467)
Q Consensus 802 ~~~l~~~ 808 (1467)
.+++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14237 246 TRNIFTN 252 (267)
T ss_pred HHHHhcC
Confidence 9988653
No 464
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=337.78 Aligned_cols=205 Identities=27% Similarity=0.421 Sum_probs=169.6
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC--C---CCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~---~~G~i~~~g--------- 658 (1467)
..++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 469999999999999999999999999999999999987 3 589998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC----CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++||+.++.. .+++ +..++++..++.+.+. ......+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 3899999999988899999988632 1222 2334455555543221 12346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+++...+.+. +....+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-ILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999988654 4444457899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 88653
No 465
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=338.55 Aligned_cols=205 Identities=26% Similarity=0.382 Sum_probs=170.0
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 658 (1467)
..++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 4699999999999999999999999999999999999975 799998755
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. .....+..+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999999888999999998631 2222 2344555555432211 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+...+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM-NLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999876544 43457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
No 466
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-35 Score=325.77 Aligned_cols=192 Identities=22% Similarity=0.321 Sum_probs=147.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-+-+.||+|.|+.. .|.+++++|-|.--.+|+||||+|.|||||+++|.|-++|+.|+..=+- |-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 46789999999644 5689999999999999999999999999999999999999999875443 56788
Q ss_pred EeccCCc--c-cccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1295 IIPQEPT--L-FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1295 iIpQdp~--L-F~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
..-|..- | -..|--+.|.-.-...-++-..+|...||....... .-..||||||-|++||-.-|+.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCCC
Confidence 8887542 1 122433333211123456667788777775542211 12359999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCE-EEEEeCCEEEE
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDM-VMVLSYGKLLE 1430 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~Dr-IlVl~~G~ivE 1430 (1467)
+||||||||.+||.++-..+-++|+++ +..||+|+|+-..|...|. .+|+++-.|-|
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 999999999999999999999999876 4469999999888865443 45666554544
No 467
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-35 Score=334.28 Aligned_cols=199 Identities=28% Similarity=0.391 Sum_probs=166.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 4699999999999999999999999999999999999999999998865
Q ss_pred ----eEEEEccCCcCCC-CCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~-~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|+||++.++. .|++|||.++. ... .++..+.++..++...+ .....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-----------DRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHH
Confidence 3899999998876 59999997421 111 12334444555544333 345678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999876544433458999999999999875 89999999999999999887
Q ss_pred HH
Q 000481 805 LL 806 (1467)
Q Consensus 805 l~ 806 (1467)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
No 468
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-36 Score=306.51 Aligned_cols=201 Identities=25% Similarity=0.342 Sum_probs=172.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
+++.+++.+|++ ...+++|+||++++||+++|.|+|||||||+|+.|.+++.|++|.|.++| +||.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 578899999975 34589999999999999999999999999999999999999999999877 5888
Q ss_pred EccCCcCC-CCCHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++-+.-++ ..|+||||.|-.. -.+.+..+..+..++.+-++ .+..++|-||||||+||||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 88665554 5699999996321 12456667777777766554 46678999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
.+||++++||||||+||..+.+.+.+.+.+....|+++|+.||.++.++. ||+|+++.+|+++..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999988766555556679999999999999985 999999999999999999988754
No 469
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.8e-34 Score=370.42 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=148.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHh------cccC----C-----------Ccce
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALF------RLVE----P-----------AGGS 1273 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~------rl~~----~-----------~~G~ 1273 (1467)
.++++|++. ..|+|+||+|++||.+||+|++|||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488999862 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEECCeeCCCCC----------HHHHhhccEEecc------CCccccc--------------chHHhc--CCC-------
Q 000481 1274 ILIDGVDICSMG----------LKDLRVKLSIIPQ------EPTLFRG--------------SVRTNL--DPL------- 1314 (1467)
Q Consensus 1274 I~IDG~dI~~i~----------l~~LR~~i~iIpQ------dp~LF~g--------------TIR~NL--dp~------- 1314 (1467)
|.||-.+|..-+ .+.+|..++=.|+ .|-.|+- .+.-++ +|.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 677766665322 2346776666554 2344431 121111 110
Q ss_pred ---CCCCHHH---------HHHHHHHc--CCchHHhhCC-----------CCccc-ccccCCCCCChhHHHHHHHHHHhc
Q 000481 1315 ---GLYSDDE---------IWKALEKC--QLKTTISSLP-----------NKLDS-SVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1315 ---~~~sd~e---------i~~aL~~~--~l~~~i~~lp-----------~gLdt-~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
..+.++- |-++|+.. ...+|+..++ -||+. .++.....||||||||++|||+|+
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 0112210 11111100 0011111111 14544 356777899999999999999999
Q ss_pred c---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEE------eCCEEEEecChhHH
Q 000481 1369 K---RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVL------SYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1369 r---~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl------~~G~ivE~g~p~~L 1437 (1467)
+ +|+++||||||++||..+...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 589999999999999999999999998764 478999999999999999999999 79999999999986
No 470
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=337.92 Aligned_cols=202 Identities=21% Similarity=0.304 Sum_probs=171.5
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
...++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 357999999999963 4699999999999999999999999999999999999999999999876
Q ss_pred eEEEEccCCcCC-CCCHHHHHhcCC-CC-------C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 SIAYVSQTSWIQ-SGSIRDNILYGK-PM-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ~i~yv~Q~~~l~-~~ti~eNi~~g~-~~-------~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|++|++.++ +.|++||+.++. +. . ++++.++++..++.+... ....+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHH
Confidence 389999998776 469999998752 11 1 234555666666654332 456799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
|++||||++.+|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999998775544433 38899999999998765 89999999999999999988
Q ss_pred HHh
Q 000481 805 LLL 807 (1467)
Q Consensus 805 l~~ 807 (1467)
+..
T Consensus 231 ~~~ 233 (265)
T PRK10253 231 IVT 233 (265)
T ss_pred Hhh
Confidence 764
No 471
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=335.43 Aligned_cols=204 Identities=28% Similarity=0.403 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC-----CcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g---------- 658 (1467)
.++++|++|+|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999987 69997654
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++... .+ +++.++++..++.+.++ ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999999888999999986421 11 22333344444432222 223467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+...+.+. +....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999988764 4444468999999999999876 79999999999999999988
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7643
No 472
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-35 Score=328.80 Aligned_cols=198 Identities=27% Similarity=0.457 Sum_probs=169.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 689999999963 22 399999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC----C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP----M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~----~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++.++. .|++||+.++.. . ++++..++++..++.+.++. ....||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR-----------LPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhC-----------CcccCCHHHHHHHHHHHHHh
Confidence 99998876 499999987531 1 13356667777777665544 34589999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++.+.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999988765544433 38899999999999876 899999999999999999988754
No 473
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.6e-35 Score=324.75 Aligned_cols=194 Identities=25% Similarity=0.310 Sum_probs=167.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 578999999953 35999999999999999999999999999999999999999999999999987654 567899999
Q ss_pred eccCCccc-ccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1296 IPQEPTLF-RGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1296 IpQdp~LF-~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+||+|.++ ..|+++|+..+. ...++++.++++..++.+... +. ..+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-------RP----VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-------Cc----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 579999995332 346778889999999875432 22 246999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhh-cccCEEEEE
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTV-IDSDMVMVL 1423 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti-~~~DrIlVl 1423 (1467)
|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998653 479999999987765 458999887
No 474
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.9e-35 Score=336.39 Aligned_cols=200 Identities=27% Similarity=0.420 Sum_probs=167.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEccCCcCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 659 ----------SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 659 ----------~i~yv~Q~~~l~~-~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
.++|++|++.++. .|++||+.++.. ... +++.+.++..++.+.+ .+.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhh
Confidence 3899999988774 799999987521 122 2344555555554333 345678
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
||||||||++||||++.+|+++||||||++||+.+...+++.+..... .|+|+|++||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988765544433 38999999999999865 8999999999999
Q ss_pred EecChHHHHhc
Q 000481 798 QSGNYQELLLA 808 (1467)
Q Consensus 798 ~~G~~~~l~~~ 808 (1467)
+.|+++++...
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999888644
No 475
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=338.83 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=168.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 45899999999963 469999999999999999999999999999999999864 6899998764
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~----~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++||+.++... . +++..++++.+++...+. ...+.++.+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 38999999999989999999976321 1 122334444444432111 22346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH-HHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999887644 444457899999999998765 8999999999999999998
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 87654
No 476
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=337.15 Aligned_cols=204 Identities=27% Similarity=0.438 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------- 658 (1467)
.++++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 4799998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. . +. +++.++++.+++..+.. .....++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 3899999999998999999987632 1 11 23444555555532111 112356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM-ELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999998876544 43457899999999999876 89999999999999999988
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
No 477
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=335.67 Aligned_cols=204 Identities=27% Similarity=0.385 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 658 (1467)
-++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 4699999999999999999999999999999999999875 799998865
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|+||++.+++.|++||+.|+... +. +++.++++.+++.+++.. ....+..+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 38999999999989999999986321 22 234556666666433322 22356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL-MVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999998764 4444456899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
No 478
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.3e-35 Score=336.54 Aligned_cols=199 Identities=27% Similarity=0.405 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 688999999963 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCc-CCCCCHHHHHhcCCC-C----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 662 YVSQTSW-IQSGSIRDNILYGKP-M----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 662 yv~Q~~~-l~~~ti~eNi~~g~~-~----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
|++|++. .+..|++||+.++.. . +.++..++++.+++.+.. ...+..||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999985 456799999988631 1 112345555655554322 2456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999998876554444458999999999999965 99999999999999999988754
No 479
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=335.00 Aligned_cols=203 Identities=29% Similarity=0.437 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 658 (1467)
.++++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998763 689998865
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+++. ......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 3899999999888999999998632 1 1 223444555555543332 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL-IQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999988654 4444457899999999998865 89999999999999999988
Q ss_pred HHh
Q 000481 805 LLL 807 (1467)
Q Consensus 805 l~~ 807 (1467)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 764
No 480
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=335.83 Aligned_cols=204 Identities=26% Similarity=0.406 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC--CC---CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~---~~G~i~~~g---------- 658 (1467)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+. .| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5899999999963 46999999999999999999999999999999999985 36 589998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++...+. +..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999998999999987521 1 11 22334455555433222 223467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+++.+.+++.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987644 444457899999999998765 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
No 481
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=334.93 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=168.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 658 (1467)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4889999999963 4699999999999999999999999999999999999974 699998876
Q ss_pred ---eEEEEccCCcC-CCCCHHHHHhcCCCC-----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ---~i~yv~Q~~~l-~~~ti~eNi~~g~~~-----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.|+|++|++.+ ++.|++||+.++... .. ++..++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999865 467999999876321 11 23445555555533221 122356679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++++|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE-LKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999999998765544 3457999999999999864 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8643
No 482
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.7e-35 Score=312.13 Aligned_cols=159 Identities=31% Similarity=0.536 Sum_probs=147.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH-HHhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~-~LR~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 579999999963 3599999999999999999999999999999999999999999999999999988764 4678899
Q ss_pred EeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998763 47899999999998865 99999999999976
No 483
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.2e-35 Score=335.52 Aligned_cols=198 Identities=27% Similarity=0.435 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC---CcEEEEcC------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g------------ 658 (1467)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4889999999963 46999999999999999999999999999999999999886 49998766
Q ss_pred ------eEEEEccCCcCCC-CCHHHHHhcCCC------------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000481 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~-~ti~eNi~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 716 (1467)
.++|+||++.++. .|++||+.++.. .. ++++.++++..++...+ ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 2799999988776 599999987631 01 22345555555554333 245
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCC
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1467)
..+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999998765544433 48999999999998765 8999999999
Q ss_pred eEeEecChHHH
Q 000481 795 QITQSGNYQEL 805 (1467)
Q Consensus 795 ~i~~~G~~~~l 805 (1467)
++.+.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
No 484
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.8e-35 Score=342.99 Aligned_cols=200 Identities=25% Similarity=0.404 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 661 (1467)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+|
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 3789999999963 4699999999999999999999999999999999999999999999877 399
Q ss_pred EEccCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~~-ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|+||++.++.. |++||+.+... .. .++.+++++..++.+.. ..+..+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 99999988765 99999976321 12 23455555555554333 35567999999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++++|++++|||||++||+.+.+.+++.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~-~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIK-NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999876544 44457999999999999876 999999999999999999998653
No 485
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.8e-35 Score=329.11 Aligned_cols=196 Identities=26% Similarity=0.398 Sum_probs=157.8
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 12699999999999999999999999999999999999999999998865
Q ss_pred -eEEEEccCCc--CC-CCCHHHHHhcCCC-----CCHHHHH----HHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -SIAYVSQTSW--IQ-SGSIRDNILYGKP-----MDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -~i~yv~Q~~~--l~-~~ti~eNi~~g~~-----~~~~~~~----~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++. ++ +.|++||+.++.. .+++..+ +.++..++.. .....+..+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999983 33 5799999986421 1111111 2333333311 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEec
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G 800 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999887655444334 899999999999987 49999999999998754
No 486
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.5e-35 Score=344.97 Aligned_cols=188 Identities=23% Similarity=0.382 Sum_probs=161.4
Q ss_pred CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEEEccCCcCCC-CCHHH
Q 000481 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQS-GSIRD 676 (1467)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~yv~Q~~~l~~-~ti~e 676 (1467)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999999999999977 3899999998776 49999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 000481 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1467)
Q Consensus 677 Ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~sa 749 (1467)
|+.+... .. .++.+++++.+++.+..+ .+..+||||||||++||||++++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9987421 12 234556666666654332 45678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999887555444568999999999999875 999999999999999999988653
No 487
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.5e-35 Score=328.67 Aligned_cols=196 Identities=21% Similarity=0.301 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------eEEEEcc
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1467)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4699999999999999999999999999999999999999999999876 4899999
Q ss_pred CCcCCC-CCHHHHHhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q 000481 666 TSWIQS-GSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~---~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~il 741 (1467)
++.++. .|++||+.++. ..++++..+.++..++.+..+ ....+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 988765 69999998642 234566677777777765433 345689999999999999999999999
Q ss_pred EEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999998876555444468999999999999865 99999999999999998764
No 488
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.2e-35 Score=312.65 Aligned_cols=162 Identities=26% Similarity=0.441 Sum_probs=146.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCCC
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~~ 672 (1467)
|+++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999632 4699999999999999999999999999999999999999999999987 79999999999889
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCH
Q 000481 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1467)
Q Consensus 673 ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~ 752 (1467)
|++||+.++ +...||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999874 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCe
Q 000481 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1467)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1467)
++.+.+.+.+ ... ++|+|++||+.+....||++++|++|.
T Consensus 125 ~~~~~l~~~l-~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLL-KEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHH-HHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999887644 333 689999999998877799999998763
No 489
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=322.41 Aligned_cols=188 Identities=29% Similarity=0.449 Sum_probs=164.4
Q ss_pred cccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcC-CCCC
Q 000481 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWI-QSGS 673 (1467)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l-~~~t 673 (1467)
-++|+||+|+.||+..|.|-||||||||++++.|+++|++|+|.++| ++++|+|+.-| +.-|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 57899999999999999999999999999999999999999999988 49999999665 5679
Q ss_pred HHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000481 674 IRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1467)
Q Consensus 674 i~eNi~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep 746 (1467)
|.||+.||.+. + +++..+.++..+|+..-...| .+||||+||||.|||||..||||+|+|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----------~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-----------NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-----------ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 99999999753 2 345566777788877666555 48999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
||||||--+..+-+++++... -+||+|+|||++++.- -.|||.+|+||+|++.|+++|++.++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 999999999888777765432 3799999999999865 479999999999999999999997653
No 490
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.1e-35 Score=333.64 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC--CCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g-------------- 658 (1467)
++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 46999999999999999999999999999999999994 79999998876
Q ss_pred eEEEEccCCcCCCC-CHHHHHhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC-ccCh
Q 000481 659 SIAYVSQTSWIQSG-SIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~-ti~eNi~~g~~----------~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~-~LSG 722 (1467)
.++|++|++.++.. |++||+.+... .+ .+++.++++..++..+.. ..+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL----------NRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhc----------ccccccCcCH
Confidence 28999999987764 99999976421 11 123344444444432211 12333 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc--CCEEEEEeCCeEeEec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~G 800 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999876554444468999999999999875 7999999999999999
Q ss_pred ChHHH
Q 000481 801 NYQEL 805 (1467)
Q Consensus 801 ~~~~l 805 (1467)
+++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR01978 228 DVELA 232 (243)
T ss_pred CHHHh
Confidence 98764
No 491
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.5e-35 Score=328.43 Aligned_cols=191 Identities=24% Similarity=0.352 Sum_probs=159.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|+++.|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcC-CCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l-~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.+ ++.|++||+.++.. .+.+ ++.+.++..++.+.+. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 38999999886 56799999988531 2222 3344555555544332 4557899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeE
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999998876554443458999999999999876 89999999999863
No 492
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=337.07 Aligned_cols=205 Identities=24% Similarity=0.380 Sum_probs=169.3
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 46999999999963 469999999999999999999999999999999999987 6999998865
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC---C-CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.++..|++||+.++.. . +++ +..++++..++.+++. ....+++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999999988899999987531 1 111 1223333333322222 22346788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEEL-VQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999988764 4444457999999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
No 493
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=335.26 Aligned_cols=204 Identities=27% Similarity=0.403 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------- 658 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 469999999999999999999999999999999999976 4799998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.+++.|++||+.++... . +++..++++.+++..++.. ..+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999998888999999986421 1 2344555666666544432 1346778999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEe---------CCeEe
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQIT 797 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 797 (1467)
++||||++.+|+++||||||++||+++.+.+.+. +....+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-MHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 9999999999999999999999999999988754 4444456899999999999876 89999998 89999
Q ss_pred EecChHHHHhc
Q 000481 798 QSGNYQELLLA 808 (1467)
Q Consensus 798 ~~G~~~~l~~~ 808 (1467)
+.|+.+|+...
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
No 494
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.2e-35 Score=332.25 Aligned_cols=190 Identities=26% Similarity=0.388 Sum_probs=163.0
Q ss_pred eeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccc-cchHHhc
Q 000481 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR-GSVRTNL 1311 (1467)
Q Consensus 1233 Lk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1311 (1467)
|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999987543 2489999999997 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000481 1312 DPL-----GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382 (1467)
Q Consensus 1312 dp~-----~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~ 1382 (1467)
... ...++ +.+.++++..++.+.... . ...||||||||++||||++++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-------R----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-------C----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 521 12332 236677888777654332 2 346999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1383 IDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1383 lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
||+.+.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998754 37899999999999876 9999999999999999887764
No 495
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-35 Score=333.51 Aligned_cols=194 Identities=26% Similarity=0.416 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEccC
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q~ 666 (1467)
++++|+++.|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 689999999963 4699999999999999999999999999999999999999999999876 38999999
Q ss_pred CcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 667 ~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
+.++. .|++||+.++.. .. .++..++++.+++.+... .+..+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 98776 699999987531 22 234555666666654332 456789999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEe--CCeEeEecCh
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~G~~ 802 (1467)
+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998765544323 48999999999999865 89999998 5999987764
No 496
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-35 Score=311.52 Aligned_cols=208 Identities=29% Similarity=0.439 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
-++++|++-.|.. ..+|+++||++++||+++++|+||+||||||++|+|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4688999999964 4799999999999999999999999999999999999999999999988 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCCCCHH-HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKPMDKA-RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
|+||||.-.+|. .||+||+..|...... +..+. .+++-.+.+|. .......++.+|||||+|-+||||||+++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999885 5999999988432211 11110 02222333332 11233478899999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
|++|+||||+.+|-|...+.||+.+.....+ |-||++|-++..+.- -+||.+||++|+|+.+|+.+|+.++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999866555434 669999999999865 58999999999999999999998764
No 497
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-34 Score=329.99 Aligned_cols=206 Identities=26% Similarity=0.395 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 5999999987654
Q ss_pred ---CCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000481 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1467)
Q Consensus 672 ---~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~s 748 (1467)
.|+++|+.+.....++++.++++.+++.+.++ ....+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987754445667788888888765543 3456899999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000481 749 AVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 815 (1467)
+||+.+.+.+++.+.....+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+. ..+.++
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~-~~~~~~ 216 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH-PEFISM 216 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC-HHHHHH
Confidence 99999999987655443333 8999999999999865 999999965 79999999987643 334443
No 498
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-35 Score=342.45 Aligned_cols=206 Identities=20% Similarity=0.311 Sum_probs=170.9
Q ss_pred cEEEEeEEEEeCCCC-------CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 000481 594 SVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~-------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 658 (1467)
.++++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996321 24689999999999999999999999999999999999999999998876
Q ss_pred --------eEEEEccCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 659 --------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 659 --------~i~yv~Q~~~--l~-~~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
+|+||+|+|. +. ..|+.+|+..+. ... .++..+.++.+++.++. ......+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCcc
Confidence 4999999983 33 359999986421 122 23455666666664322 1235678
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
|||||||||+|||||+.+|+++|+||||++||+.+.+++++.+..... .|.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876554433 48999999999999975 9999999999999
Q ss_pred EecChHHHHhcC
Q 000481 798 QSGNYQELLLAG 809 (1467)
Q Consensus 798 ~~G~~~~l~~~~ 809 (1467)
+.|+.+++.+..
T Consensus 235 e~g~~~~~~~~p 246 (327)
T PRK11308 235 EKGTKEQIFNNP 246 (327)
T ss_pred EECCHHHHhcCC
Confidence 999999998753
No 499
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-35 Score=336.83 Aligned_cols=206 Identities=24% Similarity=0.388 Sum_probs=171.5
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 658 (1467)
...++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 4699999999999999999999999999999999999874 899998765
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+++. +..++++.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 4899999999888899999987632 1 1 123445555555544332 2345678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999998876544 43457899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000481 803 QELLLA 808 (1467)
Q Consensus 803 ~~l~~~ 808 (1467)
+++...
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 887643
No 500
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=367.12 Aligned_cols=212 Identities=24% Similarity=0.364 Sum_probs=180.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
-|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999953 35999999999999999999999999999999999999999999999999997766544 46789
Q ss_pred EEeccCCccccc-chHHhcCCC-------CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPL-------GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~-------~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
+++||+|.+|.. |+++|+... +..+. +++.++++..++.+. +|.++ .+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SDKLV----GELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------ccCch----hhCCHHHHHHH
Confidence 999999988875 999999631 11222 345667777776443 23333 36999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998753 47899999999999875 89999999999999999887643
Done!