Query 000482
Match_columns 1464
No_of_seqs 735 out of 4048
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 7E-170 1E-174 1558.3 61.0 926 103-1122 184-1172(1373)
2 KOG0385 Chromatin remodeling c 100.0 6E-145 1E-149 1284.8 55.1 766 278-1134 158-957 (971)
3 PLN03142 Probable chromatin-re 100.0 5E-125 1E-129 1210.3 54.6 787 274-1134 157-985 (1033)
4 KOG0386 Chromatin remodeling c 100.0 3.3E-94 7.2E-99 873.9 32.6 506 274-812 381-906 (1157)
5 KOG0389 SNF2 family DNA-depend 100.0 1.1E-91 2.5E-96 835.4 41.4 464 276-763 387-913 (941)
6 KOG0391 SNF2 family DNA-depend 100.0 4.8E-90 1E-94 832.1 37.5 471 283-777 611-1428(1958)
7 KOG0383 Predicted helicase [Ge 100.0 4.9E-92 1.1E-96 861.3 18.7 625 48-692 42-696 (696)
8 KOG0388 SNF2 family DNA-depend 100.0 8.8E-89 1.9E-93 793.8 32.0 456 276-760 557-1176(1185)
9 KOG0387 Transcription-coupled 100.0 4E-87 8.7E-92 798.0 39.6 487 272-781 191-702 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 7.6E-81 1.7E-85 764.4 39.1 465 286-777 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 1.6E-69 3.4E-74 668.0 41.0 453 286-762 237-731 (776)
12 KOG1015 Transcription regulato 100.0 1.2E-65 2.7E-70 613.0 34.2 471 286-781 667-1321(1567)
13 KOG1002 Nucleotide excision re 100.0 3.9E-65 8.5E-70 579.1 34.0 468 276-775 174-788 (791)
14 KOG4439 RNA polymerase II tran 100.0 1.7E-63 3.7E-68 587.0 34.2 473 274-775 313-898 (901)
15 COG0553 HepA Superfamily II DN 100.0 8.2E-63 1.8E-67 652.7 40.7 471 285-777 336-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 6.3E-55 1.4E-59 512.6 25.0 483 286-779 253-891 (1387)
17 KOG1000 Chromatin remodeling p 100.0 1.1E-53 2.3E-58 488.0 32.0 409 287-758 198-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 6E-52 1.3E-56 533.7 34.6 416 286-761 151-628 (956)
19 KOG1001 Helicase-like transcri 100.0 6E-47 1.3E-51 472.1 23.6 437 290-760 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 4.1E-40 8.8E-45 382.5 23.8 272 291-588 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 1.8E-36 3.9E-41 379.1 34.9 341 285-748 253-617 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 2.2E-32 4.8E-37 358.0 41.2 429 286-754 14-495 (773)
23 KOG0298 DEAD box-containing he 100.0 8.8E-30 1.9E-34 319.0 23.7 256 304-586 372-689 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 1.8E-27 4E-32 277.9 34.8 419 286-754 14-497 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 6.3E-28 1.4E-32 295.1 31.0 362 285-750 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 5E-27 1.1E-31 292.2 32.6 339 285-738 112-455 (501)
27 PF06461 DUF1086: Domain of Un 100.0 4.2E-28 9.2E-33 241.9 13.2 133 938-1071 9-142 (145)
28 PTZ00110 helicase; Provisional 99.9 2.2E-22 4.9E-27 252.6 31.0 319 286-738 151-484 (545)
29 PRK10590 ATP-dependent RNA hel 99.9 4.4E-22 9.6E-27 245.8 29.1 310 286-731 22-347 (456)
30 TIGR00614 recQ_fam ATP-depende 99.9 4.5E-22 9.8E-27 246.5 29.1 308 286-732 10-329 (470)
31 PRK11776 ATP-dependent RNA hel 99.9 6.8E-22 1.5E-26 244.6 29.8 314 286-738 25-349 (460)
32 PRK01297 ATP-dependent RNA hel 99.9 7.8E-22 1.7E-26 245.0 30.1 316 286-738 108-442 (475)
33 PLN00206 DEAD-box ATP-dependen 99.9 9.4E-22 2E-26 246.1 30.1 315 286-738 142-475 (518)
34 KOG0354 DEAD-box like helicase 99.9 7.8E-21 1.7E-25 234.5 37.4 412 286-746 61-535 (746)
35 PRK04837 ATP-dependent RNA hel 99.9 1.1E-21 2.3E-26 240.4 26.8 313 287-737 30-361 (423)
36 PRK11192 ATP-dependent RNA hel 99.9 2.9E-21 6.3E-26 237.4 30.4 313 286-732 22-348 (434)
37 PRK04537 ATP-dependent RNA hel 99.9 3.5E-21 7.7E-26 242.7 30.0 309 286-731 30-359 (572)
38 PRK11634 ATP-dependent RNA hel 99.9 7E-21 1.5E-25 241.5 32.8 310 286-731 27-347 (629)
39 KOG1123 RNA polymerase II tran 99.9 4.1E-22 8.9E-27 229.5 19.2 341 284-744 299-659 (776)
40 PRK11057 ATP-dependent DNA hel 99.9 1.1E-20 2.3E-25 240.5 29.5 304 286-730 24-337 (607)
41 TIGR01389 recQ ATP-dependent D 99.9 1.7E-20 3.6E-25 238.9 30.1 304 286-730 12-325 (591)
42 PTZ00424 helicase 45; Provisio 99.9 1.8E-20 3.9E-25 227.9 28.6 316 286-738 49-374 (401)
43 KOG0331 ATP-dependent RNA heli 99.9 2.9E-20 6.4E-25 223.7 28.6 311 287-730 113-442 (519)
44 KOG0330 ATP-dependent RNA heli 99.9 3.1E-20 6.7E-25 210.3 22.9 322 287-748 83-415 (476)
45 PF08074 CHDCT2: CHDCT2 (NUC03 99.9 1.2E-21 2.5E-26 197.8 9.4 143 1083-1336 3-145 (173)
46 PRK11448 hsdR type I restricti 99.9 9.1E-20 2E-24 241.5 30.0 356 286-735 412-815 (1123)
47 PLN03137 ATP-dependent DNA hel 99.9 9E-20 2E-24 234.1 28.3 311 286-733 459-784 (1195)
48 PRK13767 ATP-dependent helicas 99.8 4.1E-19 8.8E-24 233.7 32.8 322 286-733 31-395 (876)
49 TIGR00643 recG ATP-dependent D 99.8 7.5E-19 1.6E-23 224.6 32.3 305 286-730 234-560 (630)
50 TIGR00580 mfd transcription-re 99.8 1E-18 2.2E-23 228.0 33.7 307 286-737 450-769 (926)
51 PRK10917 ATP-dependent DNA hel 99.8 5.9E-19 1.3E-23 227.0 30.2 304 286-729 260-582 (681)
52 TIGR03817 DECH_helic helicase/ 99.8 3.4E-19 7.3E-24 230.3 27.9 330 287-746 36-394 (742)
53 PRK10689 transcription-repair 99.8 1.4E-18 3.1E-23 231.0 28.9 304 286-729 599-912 (1147)
54 COG0513 SrmB Superfamily II DN 99.8 4E-18 8.6E-23 212.6 29.0 329 286-751 50-392 (513)
55 PRK02362 ski2-like helicase; P 99.8 1.7E-17 3.7E-22 216.2 26.1 317 286-737 22-396 (737)
56 TIGR01587 cas3_core CRISPR-ass 99.8 4.8E-17 1.1E-21 195.1 27.5 328 309-752 2-355 (358)
57 PRK00254 ski2-like helicase; P 99.8 9.8E-17 2.1E-21 208.6 28.5 317 286-739 22-389 (720)
58 PRK01172 ski2-like helicase; P 99.8 6.4E-17 1.4E-21 209.3 25.9 306 286-732 21-372 (674)
59 TIGR00348 hsdR type I site-spe 99.7 2.8E-16 6.1E-21 201.6 29.2 362 286-736 237-649 (667)
60 TIGR03714 secA2 accessory Sec 99.7 2.9E-16 6.2E-21 198.2 26.7 117 608-730 406-531 (762)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.7 1.8E-16 4E-21 201.7 24.8 107 623-734 269-390 (844)
62 COG1201 Lhr Lhr-like helicases 99.7 4.7E-16 1E-20 197.1 26.5 329 286-751 21-373 (814)
63 KOG0350 DEAD-box ATP-dependent 99.7 1.9E-16 4.1E-21 184.3 19.8 357 287-738 159-540 (620)
64 KOG0328 Predicted ATP-dependen 99.7 3.4E-16 7.4E-21 170.9 20.0 313 288-738 50-373 (400)
65 PRK09200 preprotein translocas 99.7 3.2E-15 6.9E-20 190.5 29.4 131 607-747 409-547 (790)
66 TIGR00963 secA preprotein tran 99.7 3.1E-16 6.8E-21 196.7 18.9 119 608-731 387-512 (745)
67 KOG0345 ATP-dependent RNA heli 99.7 4.8E-15 1E-19 172.0 25.2 313 286-734 27-362 (567)
68 COG4096 HsdR Type I site-speci 99.7 1.6E-15 3.5E-20 187.1 22.4 353 285-735 163-545 (875)
69 PRK12898 secA preprotein trans 99.7 1.1E-14 2.3E-19 182.3 29.1 130 608-747 455-592 (656)
70 PHA02653 RNA helicase NPH-II; 99.7 6.7E-15 1.5E-19 186.7 27.7 322 285-740 158-516 (675)
71 COG0514 RecQ Superfamily II DN 99.7 5.7E-15 1.2E-19 181.4 25.4 305 286-732 16-333 (590)
72 KOG0342 ATP-dependent RNA heli 99.7 2.9E-15 6.3E-20 175.0 20.9 307 287-728 104-429 (543)
73 PRK09751 putative ATP-dependen 99.7 3.3E-15 7.2E-20 200.1 23.9 96 625-723 243-371 (1490)
74 KOG0335 ATP-dependent RNA heli 99.7 2.9E-15 6.3E-20 178.1 19.8 309 286-733 95-441 (482)
75 KOG0333 U5 snRNP-like RNA heli 99.6 6.3E-15 1.4E-19 172.5 21.5 338 287-737 267-623 (673)
76 KOG0341 DEAD-box protein abstr 99.6 1.2E-15 2.6E-20 172.1 14.1 320 287-745 192-535 (610)
77 TIGR03158 cas3_cyano CRISPR-as 99.6 3E-14 6.6E-19 170.7 26.8 85 625-721 271-357 (357)
78 PRK09401 reverse gyrase; Revie 99.6 3.5E-14 7.5E-19 190.0 29.0 294 285-723 78-431 (1176)
79 KOG0348 ATP-dependent RNA heli 99.6 6.4E-14 1.4E-18 164.3 24.5 118 612-732 409-550 (708)
80 COG4889 Predicted helicase [Ge 99.6 1.8E-14 3.8E-19 175.1 20.2 394 285-735 159-585 (1518)
81 KOG0343 RNA Helicase [RNA proc 99.6 1E-13 2.2E-18 163.0 25.8 325 287-752 91-435 (758)
82 KOG0340 ATP-dependent RNA heli 99.6 7.7E-14 1.7E-18 157.3 23.6 308 287-727 29-352 (442)
83 COG1205 Distinct helicase fami 99.6 4.6E-14 1E-18 183.6 25.3 331 287-748 70-432 (851)
84 cd00079 HELICc Helicase superf 99.6 3.2E-15 7E-20 151.8 11.4 120 610-732 12-131 (131)
85 PRK05580 primosome assembly pr 99.6 2.5E-13 5.5E-18 174.7 31.5 153 286-468 143-304 (679)
86 KOG0338 ATP-dependent RNA heli 99.6 1.5E-14 3.3E-19 168.6 17.8 322 287-747 203-540 (691)
87 COG1200 RecG RecG-like helicas 99.6 1.4E-13 3.1E-18 168.6 26.5 303 286-727 261-582 (677)
88 PF04851 ResIII: Type III rest 99.6 6.7E-15 1.4E-19 158.3 13.1 165 286-469 2-183 (184)
89 KOG0339 ATP-dependent RNA heli 99.6 1.1E-13 2.4E-18 161.1 22.5 319 287-741 245-578 (731)
90 KOG4284 DEAD box protein [Tran 99.6 3.9E-14 8.4E-19 168.4 18.6 310 289-727 49-370 (980)
91 TIGR00595 priA primosomal prot 99.5 5E-13 1.1E-17 166.4 25.8 93 639-734 271-379 (505)
92 PRK13104 secA preprotein trans 99.5 6.8E-13 1.5E-17 169.0 27.1 130 608-747 426-593 (896)
93 KOG0336 ATP-dependent RNA heli 99.5 5.2E-13 1.1E-17 152.1 21.6 313 287-738 242-572 (629)
94 PRK09694 helicase Cas3; Provis 99.5 1E-12 2.2E-17 170.8 27.0 357 285-726 284-665 (878)
95 TIGR01054 rgy reverse gyrase. 99.5 9.3E-13 2E-17 176.7 26.5 131 286-444 77-213 (1171)
96 COG1204 Superfamily II helicas 99.5 1.2E-12 2.5E-17 168.6 26.0 310 287-727 31-397 (766)
97 PRK14701 reverse gyrase; Provi 99.5 1E-12 2.2E-17 179.6 26.5 336 286-726 78-446 (1638)
98 KOG0332 ATP-dependent RNA heli 99.5 4.4E-13 9.5E-18 152.0 18.8 320 268-727 87-434 (477)
99 KOG0326 ATP-dependent RNA heli 99.5 5.1E-14 1.1E-18 156.3 10.8 301 288-726 108-419 (459)
100 COG4098 comFA Superfamily II D 99.5 1.5E-11 3.2E-16 138.7 29.5 311 284-735 94-413 (441)
101 TIGR01970 DEAH_box_HrpB ATP-de 99.5 2.1E-12 4.5E-17 167.8 25.8 107 626-738 209-336 (819)
102 PRK12904 preprotein translocas 99.5 2.9E-12 6.4E-17 163.3 25.7 120 608-732 412-569 (830)
103 PRK12906 secA preprotein trans 99.5 1.6E-12 3.4E-17 165.1 23.1 119 608-731 422-548 (796)
104 KOG0347 RNA helicase [RNA proc 99.5 1.1E-12 2.3E-17 154.7 17.4 361 286-759 200-612 (731)
105 COG1202 Superfamily II helicas 99.5 1.5E-12 3.3E-17 153.8 18.2 315 286-738 215-553 (830)
106 PRK13107 preprotein translocas 99.4 7.2E-12 1.6E-16 159.3 25.1 120 608-732 431-587 (908)
107 PF00271 Helicase_C: Helicase 99.4 2.2E-13 4.7E-18 127.0 7.2 78 644-724 1-78 (78)
108 COG1197 Mfd Transcription-repa 99.4 3.3E-11 7.1E-16 155.4 29.1 351 286-788 593-957 (1139)
109 KOG0346 RNA helicase [RNA proc 99.4 1.1E-11 2.4E-16 143.1 21.9 120 609-732 252-406 (569)
110 PF09111 SLIDE: SLIDE; InterP 99.4 5.6E-15 1.2E-19 147.2 -4.4 100 1026-1134 1-111 (118)
111 smart00487 DEXDc DEAD-like hel 99.4 2.8E-12 6.1E-17 138.3 15.9 156 285-470 6-172 (201)
112 PRK11664 ATP-dependent RNA hel 99.4 9.4E-12 2E-16 162.1 23.6 110 625-740 211-341 (812)
113 KOG0344 ATP-dependent RNA heli 99.4 7.5E-12 1.6E-16 150.1 18.3 116 609-729 372-488 (593)
114 TIGR00631 uvrb excinuclease AB 99.4 1.8E-10 3.9E-15 147.1 30.7 125 609-739 425-554 (655)
115 cd00046 DEXDc DEAD-like helica 99.4 5.5E-12 1.2E-16 128.0 13.3 136 307-468 1-144 (144)
116 KOG0334 RNA helicase [RNA proc 99.4 3.8E-11 8.3E-16 152.2 23.4 123 609-737 597-719 (997)
117 PRK12900 secA preprotein trans 99.3 1.5E-10 3.3E-15 147.8 24.8 118 608-730 580-705 (1025)
118 KOG0351 ATP-dependent DNA heli 99.3 3.8E-11 8.3E-16 155.8 19.3 313 286-734 263-590 (941)
119 PRK05298 excinuclease ABC subu 99.3 1.5E-09 3.3E-14 139.5 33.4 123 609-737 429-556 (652)
120 smart00490 HELICc helicase sup 99.3 8E-12 1.7E-16 116.1 8.5 81 641-724 2-82 (82)
121 KOG0952 DNA/RNA helicase MER3/ 99.3 2.1E-10 4.6E-15 144.1 23.2 310 301-742 121-495 (1230)
122 PRK12899 secA preprotein trans 99.3 1.5E-09 3.2E-14 138.8 28.8 130 608-747 550-687 (970)
123 PF11496 HDA2-3: Class II hist 99.2 1E-10 2.2E-15 135.7 16.4 217 534-751 4-258 (297)
124 TIGR01967 DEAH_box_HrpA ATP-de 99.2 3.4E-10 7.5E-15 150.7 22.9 110 625-742 278-408 (1283)
125 COG1203 CRISPR-associated heli 99.2 5.2E-10 1.1E-14 145.6 23.8 355 286-753 194-567 (733)
126 PRK11131 ATP-dependent RNA hel 99.2 7.1E-10 1.5E-14 147.3 23.9 109 625-741 285-414 (1294)
127 PRK12326 preprotein translocas 99.2 2E-09 4.3E-14 134.6 25.5 120 608-732 409-543 (764)
128 KOG0327 Translation initiation 99.2 3.3E-10 7.2E-15 130.4 16.5 310 289-738 50-370 (397)
129 KOG0337 ATP-dependent RNA heli 99.2 2.5E-10 5.4E-15 131.8 13.8 311 287-738 43-368 (529)
130 cd00268 DEADc DEAD-box helicas 99.1 8.4E-10 1.8E-14 121.7 15.9 153 287-469 21-185 (203)
131 PF00270 DEAD: DEAD/DEAH box h 99.1 5.6E-10 1.2E-14 118.9 13.6 155 290-474 2-167 (169)
132 PRK13103 secA preprotein trans 99.1 4.9E-09 1.1E-13 134.1 23.9 121 607-732 430-587 (913)
133 KOG0353 ATP-dependent DNA heli 99.1 2.5E-09 5.5E-14 121.0 18.4 297 286-716 93-404 (695)
134 TIGR01407 dinG_rel DnaQ family 99.1 3.7E-09 8.1E-14 140.3 21.1 86 284-370 242-333 (850)
135 PRK12903 secA preprotein trans 99.0 5.8E-08 1.3E-12 123.2 26.2 130 608-747 408-545 (925)
136 COG0556 UvrB Helicase subunit 99.0 2.5E-07 5.5E-12 110.4 29.3 128 619-750 439-571 (663)
137 KOG0352 ATP-dependent DNA heli 99.0 4.1E-08 8.8E-13 113.5 21.1 318 290-734 23-360 (641)
138 KOG1244 Predicted transcriptio 98.9 5.6E-10 1.2E-14 121.5 0.8 62 41-102 269-333 (336)
139 KOG0951 RNA helicase BRR2, DEA 98.8 2E-07 4.4E-12 119.2 20.6 72 650-725 607-689 (1674)
140 PF13872 AAA_34: P-loop contai 98.8 4.4E-08 9.6E-13 112.2 13.2 238 278-552 27-302 (303)
141 COG1110 Reverse gyrase [DNA re 98.7 1.1E-06 2.3E-11 111.8 24.5 127 286-442 81-215 (1187)
142 KOG0947 Cytoplasmic exosomal R 98.7 1.3E-07 2.8E-12 118.4 15.7 145 282-468 292-444 (1248)
143 CHL00122 secA preprotein trans 98.7 6.8E-07 1.5E-11 114.4 22.0 84 608-695 406-490 (870)
144 COG0610 Type I site-specific r 98.7 3.8E-07 8.2E-12 121.5 19.2 139 305-472 272-417 (962)
145 COG1198 PriA Primosomal protei 98.6 2.1E-06 4.4E-11 109.8 23.6 373 286-737 197-604 (730)
146 PF06465 DUF1087: Domain of Un 98.6 4.2E-08 9E-13 86.9 5.6 44 864-907 20-63 (66)
147 TIGR00596 rad1 DNA repair prot 98.6 1.6E-06 3.5E-11 112.8 22.2 77 408-485 7-91 (814)
148 PRK12902 secA preprotein trans 98.6 2.9E-06 6.4E-11 108.5 23.2 84 608-695 421-505 (939)
149 TIGR00604 rad3 DNA repair heli 98.6 2.2E-06 4.8E-11 112.1 23.0 71 286-356 9-82 (705)
150 PF00385 Chromo: Chromo (CHRro 98.6 1.8E-08 3.9E-13 87.8 2.1 49 195-243 2-54 (55)
151 PRK07246 bifunctional ATP-depe 98.6 2.6E-06 5.7E-11 112.3 23.1 89 614-708 635-725 (820)
152 KOG1513 Nuclear helicase MOP-3 98.6 6.1E-06 1.3E-10 101.6 23.5 242 278-555 256-539 (1300)
153 COG4581 Superfamily II RNA hel 98.6 7.1E-07 1.5E-11 116.2 16.4 157 284-500 116-282 (1041)
154 KOG4299 PHD Zn-finger protein 98.5 2.1E-08 4.5E-13 121.7 1.7 49 53-101 253-306 (613)
155 PRK12901 secA preprotein trans 98.5 6E-06 1.3E-10 106.7 23.2 120 608-732 610-737 (1112)
156 COG1199 DinG Rad3-related DNA 98.5 1E-05 2.2E-10 105.4 24.7 103 623-730 476-611 (654)
157 PRK08074 bifunctional ATP-depe 98.5 9.4E-05 2E-09 99.5 33.2 90 282-371 252-347 (928)
158 KOG0329 ATP-dependent RNA heli 98.4 7.5E-06 1.6E-10 89.7 15.8 45 683-727 302-346 (387)
159 TIGR03117 cas_csf4 CRISPR-asso 98.4 0.00015 3.3E-09 92.4 29.6 79 292-370 2-87 (636)
160 PRK15483 type III restriction- 98.3 7.9E-06 1.7E-10 106.5 15.8 142 307-468 60-238 (986)
161 KOG0948 Nuclear exosomal RNA h 98.3 4.3E-06 9.2E-11 102.9 12.4 152 286-500 128-288 (1041)
162 PRK11747 dinG ATP-dependent DN 98.3 0.00013 2.8E-09 95.3 26.2 91 614-708 522-616 (697)
163 KOG0825 PHD Zn-finger protein 98.2 4E-07 8.7E-12 111.0 2.2 47 53-99 215-265 (1134)
164 KOG0949 Predicted helicase, DE 98.2 0.00023 5.1E-09 90.4 25.5 161 288-481 512-682 (1330)
165 PF02399 Herpes_ori_bp: Origin 98.2 7.6E-05 1.6E-09 95.1 21.2 114 609-733 266-385 (824)
166 cd00024 CHROMO Chromatin organ 98.2 1.1E-06 2.3E-11 76.4 2.8 49 195-243 4-54 (55)
167 PF07652 Flavi_DEAD: Flaviviru 98.1 2.6E-05 5.6E-10 80.7 10.8 130 304-468 2-136 (148)
168 PF00628 PHD: PHD-finger; Int 98.0 1.4E-06 3E-11 74.7 0.9 44 55-98 1-49 (51)
169 KOG0924 mRNA splicing factor A 98.0 0.00017 3.8E-09 88.3 17.5 94 650-746 597-705 (1042)
170 KOG0922 DEAH-box RNA helicase 98.0 0.0004 8.6E-09 86.3 20.6 108 628-740 260-392 (674)
171 smart00489 DEXDc3 DEAD-like he 98.0 5E-05 1.1E-09 89.0 12.5 72 286-357 7-84 (289)
172 smart00488 DEXDc2 DEAD-like he 98.0 5E-05 1.1E-09 89.0 12.5 72 286-357 7-84 (289)
173 smart00298 CHROMO Chromatin or 97.9 4.8E-06 1E-10 72.2 2.6 48 196-243 4-52 (55)
174 KOG0920 ATP-dependent RNA heli 97.9 0.00067 1.4E-08 88.4 22.8 129 610-744 395-550 (924)
175 KOG0349 Putative DEAD-box RNA 97.9 2.3E-05 5E-10 91.2 8.6 95 626-723 505-602 (725)
176 COG0653 SecA Preprotein transl 97.9 0.0012 2.5E-08 85.2 24.4 112 608-724 411-533 (822)
177 PF13871 Helicase_C_4: Helicas 97.9 3E-05 6.5E-10 89.0 7.8 90 667-759 52-149 (278)
178 KOG0950 DNA polymerase theta/e 97.8 0.00043 9.4E-09 88.6 18.3 150 287-469 223-388 (1008)
179 COG1643 HrpA HrpA-like helicas 97.8 0.00082 1.8E-08 87.8 20.5 111 626-741 259-390 (845)
180 smart00249 PHD PHD zinc finger 97.8 1.6E-05 3.4E-10 66.2 3.1 43 55-97 1-47 (47)
181 KOG1512 PHD Zn-finger protein 97.8 9.1E-06 2E-10 89.6 2.1 55 42-98 303-361 (381)
182 TIGR02562 cas3_yersinia CRISPR 97.7 0.021 4.5E-07 75.5 30.3 188 289-476 410-642 (1110)
183 COG5034 TNG2 Chromatin remodel 97.7 2E-05 4.3E-10 86.7 2.5 47 50-99 218-269 (271)
184 cd04718 BAH_plant_2 BAH, or Br 97.7 2.2E-05 4.7E-10 81.1 2.6 28 74-101 1-28 (148)
185 PF00385 Chromo: Chromo (CHRro 97.7 6E-06 1.3E-10 72.0 -1.4 54 103-175 2-55 (55)
186 KOG0957 PHD finger protein [Ge 97.6 2.5E-05 5.4E-10 91.9 1.3 49 50-98 541-596 (707)
187 cd00024 CHROMO Chromatin organ 97.5 3E-05 6.4E-10 67.3 0.9 51 103-174 4-54 (55)
188 PF13086 AAA_11: AAA domain; P 97.5 0.00065 1.4E-08 75.9 11.8 66 287-356 1-75 (236)
189 KOG0953 Mitochondrial RNA heli 97.5 0.00033 7.2E-09 84.7 9.2 100 624-727 356-465 (700)
190 KOG1973 Chromatin remodeling p 97.4 5.9E-05 1.3E-09 87.4 2.0 45 53-99 219-267 (274)
191 KOG4443 Putative transcription 97.3 8.8E-05 1.9E-09 91.0 2.3 52 47-98 62-116 (694)
192 KOG0955 PHD finger protein BR1 97.2 0.00025 5.4E-09 93.3 4.1 64 51-119 217-285 (1051)
193 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.0039 8.4E-08 71.9 12.9 122 285-442 75-209 (266)
194 KOG0923 mRNA splicing factor A 97.1 0.019 4.2E-07 71.2 18.3 83 652-742 508-610 (902)
195 KOG0954 PHD finger protein [Ge 97.1 0.00025 5.4E-09 87.5 2.4 90 51-160 269-364 (893)
196 COG5141 PHD zinc finger-contai 97.1 0.00026 5.6E-09 83.5 2.2 71 44-119 184-259 (669)
197 KOG0925 mRNA splicing factor A 97.0 0.017 3.8E-07 69.3 16.1 62 681-744 315-393 (699)
198 KOG2748 Uncharacterized conser 97.0 0.00014 3.1E-09 83.2 -1.1 25 133-157 26-50 (369)
199 KOG1245 Chromatin remodeling c 97.0 0.00018 4E-09 98.1 -0.3 51 51-101 1106-1159(1404)
200 KOG1473 Nucleosome remodeling 96.9 0.00041 8.9E-09 88.9 2.3 47 53-99 344-390 (1414)
201 KOG0956 PHD finger protein AF1 96.7 0.00052 1.1E-08 84.0 1.4 85 55-157 7-99 (900)
202 COG3587 Restriction endonuclea 96.7 0.0061 1.3E-07 77.5 10.2 137 305-468 73-242 (985)
203 smart00298 CHROMO Chromatin or 96.6 0.00091 2E-08 57.9 1.6 36 133-175 18-53 (55)
204 KOG4150 Predicted ATP-dependen 96.5 0.011 2.4E-07 71.7 10.1 133 608-745 507-647 (1034)
205 PF02562 PhoH: PhoH-like prote 96.5 0.022 4.7E-07 63.4 11.8 149 288-473 5-160 (205)
206 PRK10536 hypothetical protein; 96.4 0.023 5E-07 65.0 11.8 150 288-472 60-216 (262)
207 KOG0926 DEAH-box RNA helicase 96.2 0.011 2.4E-07 74.5 8.3 66 669-737 620-703 (1172)
208 KOG1911 Heterochromatin-associ 96.1 0.0054 1.2E-07 71.4 4.7 58 191-248 46-103 (270)
209 KOG1131 RNA polymerase II tran 96.0 0.013 2.8E-07 70.7 7.4 65 280-344 9-75 (755)
210 PF13401 AAA_22: AAA domain; P 96.0 0.0065 1.4E-07 61.9 4.0 35 432-468 89-125 (131)
211 PF13307 Helicase_C_2: Helicas 96.0 0.014 3.1E-07 62.9 6.7 81 623-708 6-92 (167)
212 COG0553 HepA Superfamily II DN 95.9 0.0045 9.7E-08 83.3 3.0 179 287-490 84-289 (866)
213 KOG4323 Polycomb-like PHD Zn-f 95.8 0.0028 6E-08 76.8 0.8 50 55-104 170-228 (464)
214 KOG1802 RNA helicase nonsense 95.8 0.015 3.3E-07 72.0 6.4 78 286-369 409-487 (935)
215 PRK14873 primosome assembly pr 95.6 0.065 1.4E-06 69.6 11.6 125 315-468 169-303 (665)
216 PF09848 DUF2075: Uncharacteri 95.5 0.042 9E-07 66.5 9.1 45 309-353 4-49 (352)
217 PF13604 AAA_30: AAA domain; P 95.4 0.14 3E-06 56.9 11.9 58 287-347 1-58 (196)
218 KOG2748 Uncharacterized conser 95.3 0.014 3.1E-07 67.4 3.7 50 194-244 11-60 (369)
219 TIGR00376 DNA helicase, putati 95.1 0.077 1.7E-06 69.0 10.0 75 286-366 156-231 (637)
220 PF13831 PHD_2: PHD-finger; PD 94.4 0.0088 1.9E-07 47.6 -0.6 33 64-98 3-36 (36)
221 TIGR01448 recD_rel helicase, p 94.0 0.36 7.8E-06 63.8 12.7 65 285-353 321-386 (720)
222 cd00009 AAA The AAA+ (ATPases 94.0 0.41 8.9E-06 48.5 10.6 41 306-347 19-59 (151)
223 KOG1803 DNA helicase [Replicat 93.5 0.12 2.5E-06 64.5 6.4 64 286-353 184-248 (649)
224 PF12340 DUF3638: Protein of u 93.5 0.17 3.6E-06 57.1 7.0 72 285-357 21-92 (229)
225 PLN03025 replication factor C 93.4 0.69 1.5E-05 55.2 12.7 27 307-333 35-61 (319)
226 KOG1132 Helicase of the DEAD s 93.4 0.18 4E-06 65.0 8.0 81 286-366 20-142 (945)
227 PRK07003 DNA polymerase III su 93.2 3.5 7.5E-05 54.1 18.8 42 292-333 21-65 (830)
228 PRK04296 thymidine kinase; Pro 92.9 0.34 7.4E-06 53.4 8.3 34 309-343 5-38 (190)
229 TIGR01447 recD exodeoxyribonuc 92.8 0.44 9.6E-06 61.4 10.4 54 290-347 148-205 (586)
230 PRK07764 DNA polymerase III su 92.6 2 4.2E-05 57.6 16.1 25 309-333 40-64 (824)
231 PF00249 Myb_DNA-binding: Myb- 92.4 0.11 2.3E-06 44.1 2.8 28 1084-1111 2-29 (48)
232 KOG0951 RNA helicase BRR2, DEA 92.2 0.38 8.2E-06 64.1 8.4 111 302-447 1155-1270(1674)
233 COG3421 Uncharacterized protei 91.8 0.13 2.8E-06 63.7 3.5 37 312-348 3-40 (812)
234 KOG1133 Helicase of the DEAD s 91.8 10 0.00022 48.6 19.7 81 628-709 631-721 (821)
235 PRK06526 transposase; Provisio 91.8 0.43 9.3E-06 55.2 7.7 53 294-355 90-142 (254)
236 TIGR02881 spore_V_K stage V sp 91.6 0.4 8.6E-06 55.5 7.3 27 307-333 43-69 (261)
237 PRK12402 replication factor C 91.6 0.75 1.6E-05 54.9 9.8 40 295-334 23-64 (337)
238 PRK10875 recD exonuclease V su 91.6 0.47 1E-05 61.4 8.4 56 288-347 153-211 (615)
239 KOG0383 Predicted helicase [Ge 91.3 0.082 1.8E-06 67.9 1.3 71 52-154 176-246 (696)
240 PRK14956 DNA polymerase III su 91.1 0.65 1.4E-05 58.0 8.7 42 292-333 23-67 (484)
241 smart00717 SANT SANT SWI3, AD 91.0 0.23 4.9E-06 41.2 3.3 29 1084-1112 2-30 (49)
242 PRK12723 flagellar biosynthesi 91.0 1.8 3.9E-05 53.0 12.2 55 430-484 254-313 (388)
243 cd00167 SANT 'SWI3, ADA2, N-Co 90.6 0.24 5.2E-06 40.3 3.1 29 1085-1113 1-29 (45)
244 PRK09112 DNA polymerase III su 90.6 0.96 2.1E-05 54.8 9.4 42 292-333 28-72 (351)
245 smart00492 HELICc3 helicase su 90.5 1.4 3E-05 46.4 9.3 52 654-708 26-79 (141)
246 smart00382 AAA ATPases associa 90.4 0.68 1.5E-05 46.3 6.8 44 306-350 2-45 (148)
247 TIGR03015 pepcterm_ATPase puta 90.0 1.7 3.7E-05 50.1 10.5 43 289-331 25-68 (269)
248 KOG4443 Putative transcription 89.7 0.11 2.3E-06 64.9 0.3 59 52-110 17-86 (694)
249 KOG4299 PHD Zn-finger protein 89.6 0.19 4E-06 62.8 2.2 47 53-99 47-94 (613)
250 PRK14960 DNA polymerase III su 89.4 11 0.00024 49.0 17.6 25 308-332 39-63 (702)
251 smart00491 HELICc2 helicase su 89.4 1.4 3.1E-05 46.3 8.3 54 654-708 23-80 (142)
252 PRK12323 DNA polymerase III su 89.0 1.9 4.1E-05 55.6 10.4 25 308-332 40-64 (700)
253 PRK08181 transposase; Validate 88.9 3.3 7.1E-05 48.4 11.7 53 288-341 88-140 (269)
254 PRK05703 flhF flagellar biosyn 88.7 3.7 8E-05 51.1 12.7 56 430-485 299-359 (424)
255 TIGR03420 DnaA_homol_Hda DnaA 88.6 2.2 4.7E-05 47.9 9.8 43 305-349 37-79 (226)
256 COG1875 NYN ribonuclease and A 88.3 1.6 3.5E-05 51.9 8.5 73 273-347 213-288 (436)
257 TIGR02880 cbbX_cfxQ probable R 87.8 0.79 1.7E-05 53.9 5.8 37 306-342 58-97 (284)
258 PRK14958 DNA polymerase III su 87.8 8.9 0.00019 48.9 15.4 41 293-333 22-65 (509)
259 PHA02533 17 large terminase pr 87.6 3.2 6.9E-05 53.1 11.4 55 286-344 58-113 (534)
260 PF06862 DUF1253: Protein of u 87.6 5.7 0.00012 49.3 13.1 126 610-737 281-414 (442)
261 PRK08691 DNA polymerase III su 87.4 9.2 0.0002 50.0 15.2 26 308-333 40-65 (709)
262 PRK00440 rfc replication facto 87.4 5.5 0.00012 47.1 12.7 26 308-333 40-65 (319)
263 PF15446 zf-PHD-like: PHD/FYVE 87.3 0.43 9.3E-06 50.6 2.7 34 65-98 124-175 (175)
264 CHL00181 cbbX CbbX; Provisiona 87.0 1 2.2E-05 53.1 6.1 28 306-333 59-86 (287)
265 PF00249 Myb_DNA-binding: Myb- 87.0 1.2 2.6E-05 37.7 4.9 42 971-1014 4-46 (48)
266 cd00167 SANT 'SWI3, ADA2, N-Co 86.3 1.5 3.3E-05 35.5 5.1 42 971-1014 2-43 (45)
267 PRK14949 DNA polymerase III su 86.3 2.1 4.6E-05 56.9 8.8 40 294-333 23-65 (944)
268 PRK14955 DNA polymerase III su 86.1 21 0.00045 44.2 17.1 42 292-333 21-65 (397)
269 PRK07994 DNA polymerase III su 85.7 2.9 6.2E-05 54.4 9.5 42 292-333 21-65 (647)
270 PRK07940 DNA polymerase III su 85.6 3 6.5E-05 51.3 9.3 26 308-333 38-63 (394)
271 PF05876 Terminase_GpA: Phage 85.6 1 2.2E-05 57.9 5.5 166 286-478 15-189 (557)
272 PRK06645 DNA polymerase III su 85.3 3.2 7E-05 52.6 9.6 42 292-333 26-70 (507)
273 KOG0957 PHD finger protein [Ge 85.2 0.67 1.5E-05 56.0 3.2 65 51-119 117-194 (707)
274 PHA02544 44 clamp loader, smal 85.0 5.3 0.00011 47.4 10.9 39 431-469 101-141 (316)
275 PRK14961 DNA polymerase III su 85.0 4.2 9E-05 49.6 10.1 41 292-332 21-64 (363)
276 PRK08084 DNA replication initi 84.9 4.9 0.00011 45.9 10.1 28 306-333 45-72 (235)
277 KOG0457 Histone acetyltransfer 84.9 0.64 1.4E-05 56.0 2.9 32 1083-1114 72-103 (438)
278 PRK08116 hypothetical protein; 84.9 7 0.00015 45.6 11.5 44 306-350 114-157 (268)
279 KOG1911 Heterochromatin-associ 84.5 0.45 9.7E-06 55.5 1.5 25 133-157 64-89 (270)
280 PRK14974 cell division protein 84.3 5.9 0.00013 47.7 10.8 45 308-353 142-190 (336)
281 smart00717 SANT SANT SWI3, AD 84.1 1.8 3.9E-05 35.7 4.6 45 970-1016 3-47 (49)
282 PF15446 zf-PHD-like: PHD/FYVE 83.3 0.55 1.2E-05 49.8 1.3 47 55-101 1-61 (175)
283 PRK05707 DNA polymerase III su 83.2 3.5 7.6E-05 49.6 8.3 47 287-333 3-49 (328)
284 PRK11889 flhF flagellar biosyn 83.2 8.7 0.00019 47.1 11.4 36 307-343 242-277 (436)
285 PRK14962 DNA polymerase III su 83.0 4.6 9.9E-05 51.0 9.5 25 308-332 38-62 (472)
286 PRK14957 DNA polymerase III su 83.0 5.4 0.00012 51.1 10.2 39 294-332 23-64 (546)
287 PF13173 AAA_14: AAA domain 82.1 7.1 0.00015 40.0 9.0 37 431-468 62-98 (128)
288 TIGR02928 orc1/cdc6 family rep 81.9 5.1 0.00011 48.5 9.2 44 289-332 20-66 (365)
289 PRK09111 DNA polymerase III su 81.8 5.9 0.00013 51.4 10.0 42 292-333 29-73 (598)
290 PF13245 AAA_19: Part of AAA d 81.7 3.6 7.7E-05 38.6 6.0 43 306-348 10-55 (76)
291 PRK08727 hypothetical protein; 81.6 6.1 0.00013 45.1 9.1 27 308-334 43-69 (233)
292 KOG1805 DNA replication helica 81.4 5.5 0.00012 52.7 9.4 160 287-470 669-831 (1100)
293 KOG1246 DNA-binding protein ju 81.4 1 2.2E-05 61.3 3.2 49 52-100 154-204 (904)
294 PF00448 SRP54: SRP54-type pro 81.1 4.7 0.0001 44.8 7.8 34 309-343 4-37 (196)
295 KOG0989 Replication factor C, 81.1 4.8 0.0001 47.2 7.8 43 291-333 40-84 (346)
296 COG1200 RecG RecG-like helicas 81.0 21 0.00045 46.2 14.1 131 536-705 257-392 (677)
297 TIGR02768 TraA_Ti Ti-type conj 80.7 12 0.00026 50.0 12.7 59 285-347 350-408 (744)
298 PF13921 Myb_DNA-bind_6: Myb-l 80.6 1.5 3.1E-05 38.9 2.9 26 1086-1112 1-26 (60)
299 PRK08451 DNA polymerase III su 80.3 10 0.00023 48.4 11.3 40 294-333 21-63 (535)
300 PHA03368 DNA packaging termina 80.2 6 0.00013 51.0 9.0 108 305-444 253-366 (738)
301 PRK08769 DNA polymerase III su 80.2 11 0.00025 45.0 11.0 48 287-334 4-54 (319)
302 PF13177 DNA_pol3_delta2: DNA 80.2 7.5 0.00016 41.8 8.7 43 292-334 2-47 (162)
303 PRK07471 DNA polymerase III su 80.0 8.8 0.00019 46.9 10.2 43 292-334 24-69 (365)
304 PRK14959 DNA polymerase III su 79.9 37 0.00081 44.2 16.1 37 296-332 25-64 (624)
305 TIGR00595 priA primosomal prot 79.9 10 0.00022 48.4 11.2 95 607-705 6-101 (505)
306 PRK00149 dnaA chromosomal repl 79.8 11 0.00024 47.3 11.4 41 307-347 149-190 (450)
307 PRK14951 DNA polymerase III su 79.7 5.6 0.00012 51.7 8.8 42 292-333 21-65 (618)
308 PRK14952 DNA polymerase III su 79.2 17 0.00036 47.2 12.7 42 292-333 18-62 (584)
309 PRK14950 DNA polymerase III su 79.1 13 0.00029 48.3 12.1 41 292-332 21-64 (585)
310 PF00580 UvrD-helicase: UvrD/R 79.1 4.9 0.00011 47.0 7.5 54 288-347 1-57 (315)
311 PF06733 DEAD_2: DEAD_2; Inte 78.8 1.6 3.4E-05 47.3 3.0 38 407-444 118-159 (174)
312 PHA03372 DNA packaging termina 78.4 5.8 0.00013 50.5 8.0 130 304-467 201-336 (668)
313 PRK14963 DNA polymerase III su 78.1 11 0.00025 47.9 10.7 42 292-333 19-63 (504)
314 TIGR00362 DnaA chromosomal rep 77.9 13 0.00027 46.1 10.9 35 308-342 138-173 (405)
315 TIGR01557 myb_SHAQKYF myb-like 77.5 2.7 5.9E-05 37.2 3.5 28 1083-1110 3-33 (57)
316 PRK14964 DNA polymerase III su 77.3 14 0.0003 46.8 11.1 39 294-332 20-61 (491)
317 PRK05580 primosome assembly pr 77.0 15 0.00034 48.5 11.9 95 608-706 172-267 (679)
318 PF05621 TniB: Bacterial TniB 77.0 13 0.00028 44.0 9.8 45 424-468 139-189 (302)
319 PRK13889 conjugal transfer rel 77.0 14 0.00029 50.7 11.5 59 285-347 344-402 (988)
320 cd01121 Sms Sms (bacterial rad 76.9 11 0.00025 46.0 9.9 50 304-354 80-129 (372)
321 PRK11054 helD DNA helicase IV; 76.8 12 0.00025 49.6 10.6 85 286-378 195-285 (684)
322 PRK14087 dnaA chromosomal repl 76.7 13 0.00028 46.7 10.6 45 307-351 142-187 (450)
323 COG0593 DnaA ATPase involved i 76.6 12 0.00026 46.1 9.9 52 430-481 175-234 (408)
324 PRK14948 DNA polymerase III su 76.4 12 0.00027 48.8 10.5 42 292-333 21-65 (620)
325 PHA03333 putative ATPase subun 76.2 21 0.00045 46.5 12.0 54 290-344 172-225 (752)
326 PRK08058 DNA polymerase III su 76.1 9.5 0.00021 45.9 8.9 76 291-369 10-88 (329)
327 PRK08903 DnaA regulatory inact 76.0 13 0.00029 41.8 9.6 30 304-333 40-69 (227)
328 PRK14969 DNA polymerase III su 75.6 12 0.00026 48.0 10.0 25 308-332 40-64 (527)
329 KOG1473 Nucleosome remodeling 75.6 0.61 1.3E-05 61.3 -1.4 52 50-101 425-480 (1414)
330 PRK04132 replication factor C 75.3 8.9 0.00019 51.4 9.0 49 430-478 630-679 (846)
331 PRK06893 DNA replication initi 74.7 18 0.0004 41.1 10.3 26 308-333 41-66 (229)
332 COG3267 ExeA Type II secretory 74.6 12 0.00027 42.9 8.6 51 304-356 48-105 (269)
333 PRK14722 flhF flagellar biosyn 74.5 27 0.00058 42.8 12.1 40 304-343 135-175 (374)
334 KOG1512 PHD Zn-finger protein 74.2 0.89 1.9E-05 51.4 -0.4 46 53-98 258-315 (381)
335 PF14446 Prok-RING_1: Prokaryo 74.0 2.1 4.5E-05 37.4 1.8 30 53-82 5-38 (54)
336 PRK05563 DNA polymerase III su 73.9 16 0.00035 47.2 10.6 25 309-333 41-65 (559)
337 PRK06871 DNA polymerase III su 73.9 14 0.0003 44.4 9.4 47 288-334 3-52 (325)
338 PRK14088 dnaA chromosomal repl 73.5 19 0.00041 45.2 10.8 37 307-343 131-168 (440)
339 PF01695 IstB_IS21: IstB-like 72.9 5.8 0.00013 43.4 5.5 47 304-355 45-91 (178)
340 TIGR03345 VI_ClpV1 type VI sec 72.6 13 0.00028 50.4 9.7 42 292-333 192-235 (852)
341 PRK14086 dnaA chromosomal repl 72.2 23 0.00051 45.9 11.3 43 308-350 316-359 (617)
342 COG2256 MGS1 ATPase related to 72.1 12 0.00026 45.5 8.1 25 305-329 47-71 (436)
343 PRK14953 DNA polymerase III su 72.1 18 0.00039 46.0 10.2 41 292-332 21-64 (486)
344 PRK04195 replication factor C 71.4 29 0.00063 44.0 12.0 42 288-330 18-63 (482)
345 COG1484 DnaC DNA replication p 71.1 11 0.00025 43.5 7.6 66 289-355 88-153 (254)
346 KOG3612 PHD Zn-finger protein 70.8 2.8 6.1E-05 51.8 2.6 50 51-100 58-108 (588)
347 PF12861 zf-Apc11: Anaphase-pr 70.8 1.7 3.7E-05 41.5 0.6 43 56-100 35-80 (85)
348 PRK05642 DNA replication initi 70.4 18 0.00039 41.3 8.9 36 432-467 99-138 (234)
349 PRK06647 DNA polymerase III su 70.3 29 0.00063 44.9 11.7 25 309-333 41-65 (563)
350 COG1198 PriA Primosomal protei 69.8 21 0.00045 47.3 10.2 111 538-689 195-306 (730)
351 PRK00411 cdc6 cell division co 69.6 26 0.00056 42.9 10.8 46 289-334 35-83 (394)
352 PRK14965 DNA polymerase III su 69.6 35 0.00077 44.3 12.3 25 309-333 41-65 (576)
353 PTZ00112 origin recognition co 69.1 35 0.00077 45.8 11.8 45 288-332 759-807 (1164)
354 PRK06964 DNA polymerase III su 69.0 17 0.00037 44.0 8.7 47 288-334 2-49 (342)
355 PRK00771 signal recognition pa 69.0 25 0.00054 44.0 10.3 37 307-343 96-132 (437)
356 KOG0442 Structure-specific end 68.9 1.7E+02 0.0038 39.0 17.7 55 699-759 546-605 (892)
357 KOG0384 Chromodomain-helicase 68.5 1.6 3.4E-05 58.6 -0.1 25 133-157 300-324 (1373)
358 KOG0991 Replication factor C, 68.3 11 0.00023 42.7 6.1 29 305-333 47-75 (333)
359 PRK05896 DNA polymerase III su 68.1 31 0.00068 44.7 11.2 39 295-333 24-65 (605)
360 KOG0952 DNA/RNA helicase MER3/ 67.8 5.7 0.00012 53.0 4.5 111 304-445 941-1061(1230)
361 COG3973 Superfamily I DNA and 67.7 9.5 0.00021 48.4 6.2 60 288-352 213-277 (747)
362 cd01120 RecA-like_NTPases RecA 67.6 28 0.00062 36.0 9.2 35 309-344 2-36 (165)
363 PRK10917 ATP-dependent DNA hel 67.1 28 0.00061 46.2 10.9 97 608-707 292-393 (681)
364 PRK12422 chromosomal replicati 67.0 20 0.00042 45.1 9.0 36 307-343 142-177 (445)
365 PRK13342 recombination factor 66.8 24 0.00052 43.9 9.7 24 307-330 37-60 (413)
366 PRK06090 DNA polymerase III su 66.5 30 0.00065 41.5 10.0 48 287-334 3-53 (319)
367 PRK07133 DNA polymerase III su 66.4 22 0.00048 46.9 9.6 40 294-333 25-67 (725)
368 PRK06731 flhF flagellar biosyn 66.2 44 0.00095 39.2 11.1 47 305-352 74-124 (270)
369 PRK14954 DNA polymerase III su 66.1 27 0.00058 45.7 10.2 42 292-333 21-65 (620)
370 PF00004 AAA: ATPase family as 65.6 13 0.00029 37.3 6.0 34 310-347 2-35 (132)
371 PRK12727 flagellar biosynthesi 65.3 55 0.0012 41.9 12.3 38 305-342 349-387 (559)
372 PRK07993 DNA polymerase III su 64.9 23 0.0005 42.8 8.7 47 287-333 2-51 (334)
373 PRK10865 protein disaggregatio 64.8 22 0.00049 48.3 9.5 37 296-332 187-225 (857)
374 PLN03212 Transcription repress 64.5 6.6 0.00014 44.6 3.7 28 1083-1110 25-52 (249)
375 TIGR01557 myb_SHAQKYF myb-like 63.9 15 0.00033 32.6 5.1 48 970-1017 5-55 (57)
376 TIGR03689 pup_AAA proteasome A 63.8 16 0.00035 46.5 7.4 29 304-332 214-242 (512)
377 TIGR00678 holB DNA polymerase 63.6 42 0.00091 36.6 9.9 27 307-333 15-41 (188)
378 PRK05986 cob(I)alamin adenolsy 63.3 68 0.0015 35.6 11.2 62 423-484 108-173 (191)
379 PF05496 RuvB_N: Holliday junc 63.2 34 0.00073 39.0 8.9 23 307-329 51-73 (233)
380 COG0470 HolB ATPase involved i 62.7 30 0.00066 40.8 9.3 30 305-334 22-52 (325)
381 PRK11823 DNA repair protein Ra 62.7 21 0.00045 44.9 8.1 61 295-356 68-129 (446)
382 PRK07952 DNA replication prote 61.5 26 0.00057 40.4 8.0 62 290-356 79-144 (244)
383 PLN03091 hypothetical protein; 61.1 8 0.00017 47.2 3.8 51 1083-1136 14-64 (459)
384 TIGR00708 cobA cob(I)alamin ad 60.7 11 0.00025 41.0 4.6 59 423-481 90-152 (173)
385 cd00561 CobA_CobO_BtuR ATP:cor 60.5 53 0.0011 35.5 9.5 57 423-479 88-148 (159)
386 cd03115 SRP The signal recogni 60.4 49 0.0011 35.5 9.6 35 309-343 3-37 (173)
387 KOG4628 Predicted E3 ubiquitin 60.1 4.7 0.0001 48.2 1.7 43 54-99 230-275 (348)
388 PRK13341 recombination factor 59.8 35 0.00077 45.4 9.8 25 306-330 52-76 (725)
389 cd01124 KaiC KaiC is a circadi 59.6 21 0.00045 38.5 6.6 48 309-357 2-49 (187)
390 CHL00095 clpC Clp protease ATP 59.6 3.3E+02 0.0071 37.2 19.1 25 309-333 542-566 (821)
391 PRK10865 protein disaggregatio 59.4 5E+02 0.011 35.7 20.7 25 308-332 600-624 (857)
392 COG4626 Phage terminase-like p 59.4 50 0.0011 42.0 10.3 59 286-344 60-127 (546)
393 KOG1081 Transcription factor N 59.3 5.9 0.00013 49.7 2.5 46 52-100 88-133 (463)
394 CHL00095 clpC Clp protease ATP 59.1 31 0.00066 46.9 9.3 29 305-333 199-227 (821)
395 TIGR02397 dnaX_nterm DNA polym 58.6 54 0.0012 39.4 10.6 26 308-333 38-63 (355)
396 PRK13833 conjugal transfer pro 58.6 19 0.00042 43.2 6.5 47 283-332 124-170 (323)
397 KOG1244 Predicted transcriptio 58.3 3 6.5E-05 47.2 -0.3 59 52-110 223-299 (336)
398 PRK12724 flagellar biosynthesi 58.2 48 0.001 41.2 9.8 22 309-330 226-247 (432)
399 PRK10867 signal recognition pa 58.0 49 0.0011 41.4 10.1 35 309-343 103-137 (433)
400 PRK06305 DNA polymerase III su 58.0 40 0.00087 42.4 9.5 42 292-333 22-66 (451)
401 PRK06835 DNA replication prote 57.5 23 0.00051 42.6 7.0 49 286-334 159-211 (329)
402 PRK10919 ATP-dependent DNA hel 57.4 18 0.00039 47.9 6.5 52 287-344 2-56 (672)
403 PRK14873 primosome assembly pr 57.4 43 0.00093 44.2 9.9 94 608-705 170-265 (665)
404 TIGR02639 ClpA ATP-dependent C 57.0 57 0.0012 43.8 11.2 29 305-333 202-230 (731)
405 TIGR00959 ffh signal recogniti 56.6 45 0.00098 41.7 9.4 36 308-343 101-136 (428)
406 TIGR00643 recG ATP-dependent D 56.5 51 0.0011 43.4 10.5 97 608-707 266-367 (630)
407 TIGR03346 chaperone_ClpB ATP-d 56.4 36 0.00078 46.4 9.3 38 295-332 181-220 (852)
408 PRK05973 replicative DNA helic 56.0 29 0.00062 39.9 7.0 57 299-356 57-113 (237)
409 PRK13826 Dtr system oriT relax 56.0 80 0.0017 44.0 12.2 58 286-347 380-437 (1102)
410 TIGR01074 rep ATP-dependent DN 55.5 42 0.0009 44.4 9.5 65 288-358 2-70 (664)
411 PF11793 FANCL_C: FANCL C-term 55.4 1.3 2.8E-05 40.9 -3.1 46 54-99 3-63 (70)
412 PF13901 DUF4206: Domain of un 55.0 8.1 0.00018 43.2 2.4 39 52-99 151-197 (202)
413 PF00308 Bac_DnaA: Bacterial d 54.9 1.2E+02 0.0026 34.2 11.9 37 430-466 97-137 (219)
414 KOG1807 Helicases [Replication 54.9 33 0.00071 44.7 7.7 91 286-382 377-473 (1025)
415 PF00265 TK: Thymidine kinase; 54.7 53 0.0011 36.0 8.6 34 310-344 5-38 (176)
416 PF01393 Chromo_shadow: Chromo 54.6 5.5 0.00012 35.5 0.8 26 194-219 3-28 (58)
417 KOG1133 Helicase of the DEAD s 54.4 22 0.00048 45.8 6.2 45 286-330 14-58 (821)
418 KOG0048 Transcription factor, 54.3 9.9 0.00021 43.6 3.0 49 1085-1136 11-59 (238)
419 TIGR01075 uvrD DNA helicase II 53.9 32 0.0007 45.9 8.2 67 287-359 4-74 (715)
420 COG0541 Ffh Signal recognition 53.7 35 0.00075 42.2 7.5 106 309-457 103-208 (451)
421 TIGR01425 SRP54_euk signal rec 53.4 1.2E+02 0.0027 37.9 12.3 34 309-343 103-136 (429)
422 COG2255 RuvB Holliday junction 53.0 15 0.00032 43.0 4.0 24 307-330 53-76 (332)
423 TIGR02640 gas_vesic_GvpN gas v 52.9 33 0.00071 39.9 7.1 49 290-342 5-53 (262)
424 PRK11034 clpA ATP-dependent Cl 52.9 28 0.00061 46.6 7.2 29 305-333 206-234 (758)
425 CHL00206 ycf2 Ycf2; Provisiona 52.8 33 0.00071 49.5 7.9 43 304-350 1628-1670(2281)
426 COG1419 FlhF Flagellar GTP-bin 52.3 1.5E+02 0.0032 36.8 12.4 57 431-487 282-342 (407)
427 PRK08699 DNA polymerase III su 51.7 82 0.0018 38.0 10.3 46 288-333 2-48 (325)
428 PRK11773 uvrD DNA-dependent he 51.3 26 0.00056 46.9 6.6 52 287-344 9-63 (721)
429 PRK07399 DNA polymerase III su 51.0 67 0.0014 38.5 9.4 43 292-334 9-54 (314)
430 PF07432 Hc1: Histone H1-like 50.7 23 0.00051 35.5 4.4 49 1287-1335 3-51 (123)
431 PF13771 zf-HC5HC2H: PHD-like 50.6 7.7 0.00017 37.2 1.2 30 52-81 35-67 (90)
432 TIGR02782 TrbB_P P-type conjug 50.5 30 0.00066 41.1 6.4 44 286-332 115-158 (299)
433 PRK14971 DNA polymerase III su 50.1 1.4E+02 0.0031 39.2 12.8 24 309-332 42-65 (614)
434 PF00437 T2SE: Type II/IV secr 49.4 27 0.00057 40.6 5.6 37 297-333 118-154 (270)
435 PF03354 Terminase_1: Phage Te 49.3 1.1E+02 0.0023 39.0 11.4 46 421-468 114-162 (477)
436 TIGR03499 FlhF flagellar biosy 49.1 59 0.0013 38.3 8.5 38 306-343 194-232 (282)
437 COG1435 Tdk Thymidine kinase [ 49.1 52 0.0011 36.6 7.3 34 431-467 83-118 (201)
438 PF06745 KaiC: KaiC; InterPro 48.1 30 0.00066 38.9 5.7 55 304-358 17-71 (226)
439 PRK09376 rho transcription ter 48.1 27 0.00057 43.0 5.4 31 303-333 166-196 (416)
440 PF13832 zf-HC5HC2H_2: PHD-zin 47.6 9.3 0.0002 38.2 1.3 30 52-81 54-86 (110)
441 COG1474 CDC6 Cdc6-related prot 47.5 1E+02 0.0022 37.8 10.4 46 288-333 21-69 (366)
442 PRK06995 flhF flagellar biosyn 47.2 87 0.0019 39.8 9.9 33 309-341 259-292 (484)
443 smart00300 ChSh Chromo Shadow 47.0 15 0.00032 33.1 2.3 24 194-217 7-30 (61)
444 PRK10416 signal recognition pa 46.7 1.7E+02 0.0036 35.3 11.8 33 309-342 117-149 (318)
445 PF12846 AAA_10: AAA-like doma 46.0 54 0.0012 37.9 7.6 45 306-351 1-45 (304)
446 KOG0738 AAA+-type ATPase [Post 45.7 76 0.0016 38.8 8.4 49 305-357 244-292 (491)
447 PRK09183 transposase/IS protei 45.6 57 0.0012 37.9 7.5 51 292-347 92-142 (259)
448 TIGR00064 ftsY signal recognit 45.3 1.4E+02 0.003 35.1 10.6 33 309-342 75-107 (272)
449 KOG0049 Transcription factor, 45.1 50 0.0011 42.0 7.0 75 971-1109 363-438 (939)
450 PRK14721 flhF flagellar biosyn 45.1 1.3E+02 0.0029 37.5 10.9 53 430-483 269-326 (420)
451 PRK12377 putative replication 44.9 1E+02 0.0022 35.7 9.4 43 306-349 101-143 (248)
452 COG0552 FtsY Signal recognitio 44.9 1E+02 0.0022 37.0 9.4 60 307-367 139-199 (340)
453 cd01128 rho_factor Transcripti 44.8 83 0.0018 36.5 8.6 26 304-329 14-39 (249)
454 PRK06921 hypothetical protein; 44.8 78 0.0017 37.0 8.5 39 305-343 116-154 (266)
455 PF14061 Mtf2_C: Polycomb-like 44.7 12 0.00025 32.0 1.2 22 198-219 27-49 (50)
456 KOG0780 Signal recognition par 44.7 53 0.0012 39.9 6.9 57 310-367 105-161 (483)
457 TIGR00767 rho transcription te 44.7 93 0.002 38.6 9.3 31 303-333 165-195 (415)
458 KOG0737 AAA+-type ATPase [Post 44.6 26 0.00056 42.4 4.4 50 304-357 125-174 (386)
459 TIGR00416 sms DNA repair prote 44.3 51 0.0011 41.6 7.3 52 304-356 92-143 (454)
460 PRK10263 DNA translocase FtsK; 44.3 59 0.0013 45.4 8.2 41 305-345 1009-1052(1355)
461 TIGR00580 mfd transcription-re 44.0 1E+02 0.0023 42.3 10.6 95 608-705 482-581 (926)
462 cd01129 PulE-GspE PulE/GspE Th 43.7 43 0.00092 39.1 6.1 43 287-331 63-105 (264)
463 PF02606 LpxK: Tetraacyldisacc 43.4 1.3E+02 0.0029 36.2 10.3 122 316-469 47-189 (326)
464 CHL00176 ftsH cell division pr 43.2 94 0.002 41.0 9.7 25 306-330 216-240 (638)
465 PRK08939 primosomal protein Dn 43.2 37 0.0008 40.5 5.6 46 295-341 143-190 (306)
466 TIGR03877 thermo_KaiC_1 KaiC d 43.1 61 0.0013 37.0 7.2 52 304-356 19-70 (237)
467 PF13639 zf-RING_2: Ring finge 43.0 2.9 6.2E-05 34.6 -2.7 40 54-98 1-44 (44)
468 cd00034 ChSh Chromo Shadow Dom 43.0 12 0.00026 32.9 1.0 29 196-227 2-31 (54)
469 PRK08760 replicative DNA helic 42.4 67 0.0015 40.8 8.0 63 295-357 218-280 (476)
470 KOG2543 Origin recognition com 42.2 7.7E+02 0.017 30.6 16.1 141 287-471 9-161 (438)
471 cd00984 DnaB_C DnaB helicase C 41.8 35 0.00076 38.7 5.0 44 301-344 8-51 (242)
472 PF06068 TIP49: TIP49 C-termin 41.7 37 0.0008 41.3 5.2 39 305-345 49-87 (398)
473 KOG0740 AAA+-type ATPase [Post 41.5 38 0.00082 42.0 5.4 47 306-356 186-232 (428)
474 PRK14723 flhF flagellar biosyn 41.4 1.3E+02 0.0029 40.2 10.5 36 308-343 187-223 (767)
475 PRK13894 conjugal transfer ATP 41.0 53 0.0011 39.5 6.4 43 286-331 131-173 (319)
476 PRK05748 replicative DNA helic 40.4 62 0.0013 40.7 7.3 61 294-354 191-251 (448)
477 PRK13766 Hef nuclease; Provisi 40.4 4.4E+02 0.0096 35.6 15.8 93 608-707 39-141 (773)
478 cd00730 rubredoxin Rubredoxin; 39.8 16 0.00035 31.6 1.4 34 67-101 3-44 (50)
479 TIGR03880 KaiC_arch_3 KaiC dom 39.6 74 0.0016 35.7 7.1 52 305-357 15-66 (224)
480 TIGR01547 phage_term_2 phage t 39.1 1.1E+02 0.0023 37.8 8.9 36 309-344 4-41 (396)
481 PHA00012 I assembly protein 39.0 71 0.0015 38.4 6.8 25 310-334 5-29 (361)
482 PF13481 AAA_25: AAA domain; P 38.9 40 0.00087 36.7 4.7 54 305-358 31-93 (193)
483 PRK14712 conjugal transfer nic 38.9 1.7E+02 0.0037 42.4 11.5 59 287-347 835-896 (1623)
484 COG5114 Histone acetyltransfer 38.8 23 0.00051 41.1 2.8 36 1076-1113 58-93 (432)
485 TIGR03881 KaiC_arch_4 KaiC dom 38.7 86 0.0019 35.3 7.5 52 303-355 17-68 (229)
486 PF08232 Striatin: Striatin fa 38.4 96 0.0021 32.5 7.1 29 1193-1221 42-70 (134)
487 TIGR01073 pcrA ATP-dependent D 38.3 51 0.0011 44.1 6.4 52 287-344 4-58 (726)
488 PRK08533 flagellar accessory p 38.2 81 0.0018 35.9 7.1 52 304-356 22-73 (230)
489 KOG4218 Nuclear hormone recept 37.7 17 0.00038 42.6 1.6 50 49-98 11-74 (475)
490 PRK06646 DNA polymerase III su 37.7 49 0.0011 35.5 4.9 82 607-708 10-95 (154)
491 PRK05564 DNA polymerase III su 37.7 1.4E+02 0.003 35.6 9.3 25 309-333 29-53 (313)
492 KOG0780 Signal recognition par 37.6 3.8E+02 0.0082 33.1 12.4 72 606-677 109-184 (483)
493 PF01443 Viral_helicase1: Vira 37.5 36 0.00078 38.2 4.2 40 430-472 62-101 (234)
494 cd00162 RING RING-finger (Real 37.3 10 0.00023 30.3 -0.2 41 56-99 2-43 (45)
495 PRK06904 replicative DNA helic 37.2 87 0.0019 39.8 7.8 60 295-354 210-269 (472)
496 COG0467 RAD55 RecA-superfamily 37.2 80 0.0017 36.5 7.1 52 304-356 21-72 (260)
497 PF05127 Helicase_RecD: Helica 36.4 27 0.00058 38.3 2.7 35 310-344 1-35 (177)
498 PF05970 PIF1: PIF1-like helic 36.4 73 0.0016 38.9 6.8 60 287-347 1-62 (364)
499 PRK05728 DNA polymerase III su 36.3 58 0.0013 34.4 5.1 82 608-708 11-96 (142)
500 PF03796 DnaB_C: DnaB-like hel 36.2 1E+02 0.0022 35.6 7.7 63 295-357 8-71 (259)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6.9e-170 Score=1558.32 Aligned_cols=926 Identities=42% Similarity=0.724 Sum_probs=758.4
Q ss_pred ccccccccccccCccCCC----Ccccc--------cchhhhHHHHHhhccCCCcccccccchhhHHHhhhcChhHHHHHH
Q 000482 103 DIDKILDCEMRPTVAGDS----DVSKL--------GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 170 (1464)
Q Consensus 103 didkiL~wr~~P~~~~~~----~~~~~--------~~k~~~~~EYLVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~ 170 (1464)
.|+.+++||.++...+.. ..... ..+.....||||||+|+||+||||+++++|... ..++-+|++
T Consensus 184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~ 260 (1373)
T KOG0384|consen 184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD 260 (1373)
T ss_pred hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence 688888888655433310 00000 011134579999999999999999999998643 233346999
Q ss_pred hHhhhhccCCC--chhhhccCCCCccchhhhhhhccCCCCceEEEEEeccccccccccccccccc-chHHHHHHHHHhhc
Q 000482 171 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR 247 (1464)
Q Consensus 171 ~f~kk~~~~~~--~~ed~~~i~pe~~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~-~~~~i~~f~~~~~~ 247 (1464)
||.++...... ..++...++++|.+|||||++....+ .+|||||++|||++||||...+|.. .+.++++|..+...
T Consensus 261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s 339 (1373)
T KOG0384|consen 261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS 339 (1373)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence 99988543221 12334568899999999999987655 8999999999999999999998864 67788888865432
Q ss_pred ccccccCcCCCCCccccccCCCCcccccccCCCCCCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH
Q 000482 248 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 327 (1464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l 327 (1464)
.. .+...+...+.++.|.+++.||.|+.|++||+||++|||||.++|+++.+||||||||||||+|+|+||
T Consensus 340 k~---------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl 410 (1373)
T KOG0384|consen 340 KT---------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL 410 (1373)
T ss_pred cc---------CCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence 21 122223344567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC--CCcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 000482 328 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 405 (1464)
Q Consensus 328 ~~l~~~~--~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1464)
.+|+... .||||||||+|++.+|.+||..|+ ++|+++|+|+..+|++|++|||++.... .
T Consensus 411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~ 472 (1373)
T KOG0384|consen 411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K 472 (1373)
T ss_pred HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence 9998864 579999999999999999999999 9999999999999999999999976542 2
Q ss_pred cccccEEEecHHHHHhhhcccCCCceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcC
Q 000482 406 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 485 (1464)
Q Consensus 406 ~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p 485 (1464)
..+|+++||||+++.+|...|..++|.+++|||||||||..|+++..|..+..+||||+||||+|||+.|||+|||||+|
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcC
Q 000482 486 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 565 (1464)
Q Consensus 486 ~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~ 565 (1464)
+.|.+.++|...| +..++..+..||..|+||||||+|+||++.|||+.|+|+.|+||.+|+++|++||++|+.+|.++.
T Consensus 553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~ 631 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA 631 (1373)
T ss_pred CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence 9999999999999 778889999999999999999999999999999999999999999999999999999999999764
Q ss_pred -CchhhHHHHHHHHHHHhCCcccccCCCCCccch------hHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhh
Q 000482 566 -GAQISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 638 (1464)
Q Consensus 566 -~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~------~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ 638 (1464)
++..+++|++|+||||||||||+.+++..+... ++.++.+|.+||||.+|++||.+|++.||||||||||++|
T Consensus 632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence 445799999999999999999999987655432 3688999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHH
Q 000482 639 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 718 (1464)
Q Consensus 639 LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAig 718 (1464)
||||++||..+||+|.||||++.++.|+++||+||+++|+.|||||||||||+||||++||||||||+|||||+|+||++
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcccc-------ccCCCHHHHHHHHHhchhhhhcccCccC
Q 000482 719 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-------AQNINQEELDDIIRYGSKELFADENDEG 791 (1464)
Q Consensus 719 RahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~~~-------~~~~~~~el~~ll~~ga~~lf~~~~~~~ 791 (1464)
|||||||++.|.||||||++||||.|+++|++||.|+++||++|. .+.++++||.+||+|||+++|.++++++
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~ 871 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE 871 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence 999999999999999999999999999999999999999998875 3578999999999999999999987665
Q ss_pred CCcccccCCHHHHHHHhccCCCCCcccCCCCcchhhHHhHhhhhcccchhHHHHHHHHHHHHHHHhhccCCCCccchhhH
Q 000482 792 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW 871 (1464)
Q Consensus 792 ~~~~~~~~~d~~id~il~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 871 (1464)
.+ +.++|||+||.|.+...++.++ -..++.+|++|+||+|...|+..-. .. +.-.|
T Consensus 872 s~-----~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~~---------------~~---~didw 927 (1373)
T KOG0384|consen 872 SK-----FCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADLE---------------AE---RDIDW 927 (1373)
T ss_pred cc-----ccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhhh---------------hh---ccCCh
Confidence 43 5679999999999987665442 2457889999999999986652211 00 11469
Q ss_pred HHHHHHHHH-----HHHHHHhhhcCCCCCCcc--cccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc
Q 000482 872 EELLKDRYE-----VHKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN 944 (1464)
Q Consensus 872 ~~~~~~~~~-----~~~~~~~~~~~~~~r~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1464)
+.++++... +....+.+.+...+|.|. +......+. + . .++ .++. .. ++ ..
T Consensus 928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-~--~~~----~~e~--~~----------~~-~~ 985 (1373)
T KOG0384|consen 928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-A--ESR----SVEK--SL----------GK-KG 985 (1373)
T ss_pred hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-c--ccc----cccc--cc----------cc-cc
Confidence 999887542 233334555555555554 332211110 0 0 000 0000 00 00 01
Q ss_pred cccccCCCCCCCCCccccccchhhcCCChHHHHHHHHHHHhcCCCccchhhhc--hhhcCCCHHHHHHHHHHHHHhhhhc
Q 000482 945 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITED 1022 (1464)
Q Consensus 945 ~~~~~~~~~~~~~Lte~e~~~l~v~GF~~w~Rr~Fv~a~~kyG~~~~~~~~ia--~el~~Ks~eEvk~Ya~lF~~~~~E~ 1022 (1464)
++|.+.+ ++ ..-.+.||+..+.|+|++++++||.+.+..+.|+ +++..++++++++.+.+....|.++
T Consensus 986 ~~r~r~~------~~----~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~~a 1055 (1373)
T KOG0384|consen 986 KGRWREI------LK----RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACKSA 1055 (1373)
T ss_pred ccccccc------cc----cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhhhh
Confidence 1222211 11 1235679999999999999999999987777776 6788999999999999999999876
Q ss_pred cCCC----CCcc---C----CCCc-------Cc--cchhHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc---C
Q 000482 1023 ITDS----PTFS---D----GVPK-------EG--LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYP---G 1079 (1464)
Q Consensus 1023 i~d~----~~~~---d----~i~k-------~~--~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~~~~~y~---~ 1079 (1464)
+.+. .++. . +.++ ++ +....|+.|+..+..|++.|......+.. ..+.|. .
T Consensus 1056 ~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~~------~~~~~~~~~~ 1129 (1373)
T KOG0384|consen 1056 VSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPNQ------FIIDYLPKSV 1129 (1373)
T ss_pred cchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCcccccc------cccCCCCccc
Confidence 5442 1111 0 0010 11 33456777888888888776554212211 111121 1
Q ss_pred CCCCCccCHHHHHHHHHHHHhhcccchHHhhhCcccChHHHHH
Q 000482 1080 LRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVIC 1122 (1464)
Q Consensus 1080 ~~~~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~ 1122 (1464)
..+++.|+.++|..||+|||+||||+|++||+||+|+|.+||.
T Consensus 1130 ~~~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~ 1172 (1373)
T KOG0384|consen 1130 HSWDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIF 1172 (1373)
T ss_pred cCcccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhc
Confidence 2378999999999999999999999999999999999999995
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=6.4e-145 Score=1284.82 Aligned_cols=766 Identities=39% Similarity=0.630 Sum_probs=636.6
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh-CC-CCcEEEEEccccHHHHHHHHH
Q 000482 278 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREFA 355 (1464)
Q Consensus 278 ~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~-~~-~~p~LIVvP~sll~qW~~E~~ 355 (1464)
.+|.++.|+.|||||++|||||+.+|.++.|||||||||||||+|+|+++.+|.. .+ .|||||+||+||+.||.+||+
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~ 237 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFK 237 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999987 33 579999999999999999999
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEE
Q 000482 356 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 435 (1464)
Q Consensus 356 k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VI 435 (1464)
+|+|++++++|+|++..|..+++.-+ ....|+|+||||+++.++.+.|++++|.+||
T Consensus 238 rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylv 294 (971)
T KOG0385|consen 238 RFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLV 294 (971)
T ss_pred HhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEEE
Confidence 99999999999999999988776422 1248999999999999999999999999999
Q ss_pred eccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHHHHHH
Q 000482 436 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHR 512 (1464)
Q Consensus 436 vDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~---~~~~~i~~L~~ 512 (1464)
|||||||||.+|++++.|+.|.+.+||||||||+|||+.|||+|||||.|+.|.+.+.|..||... ...+.+.+||.
T Consensus 295 IDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~ 374 (971)
T KOG0385|consen 295 IDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHK 374 (971)
T ss_pred echhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999752 34468999999
Q ss_pred hhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHhCCcccccCC
Q 000482 513 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEGV 591 (1464)
Q Consensus 513 ~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~-~~~~l~nil~~LRk~c~HP~L~~~~ 591 (1464)
+|+||+|||+|.+|++.|||+++.+++|.||.+|+++|+.++.+....++..+. ....++|++|+|||||||||||+++
T Consensus 375 vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ 454 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA 454 (971)
T ss_pred hhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC
Confidence 999999999999999999999999999999999999999999999999886554 6789999999999999999999999
Q ss_pred CCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHH
Q 000482 592 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 592 e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~ 671 (1464)
+|..+.... .+|+.+||||.+|++||.+|+++||||||||||++|||||++||..+||.||||||+|+.++|..+|+.
T Consensus 455 ePg~pyttd--ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 455 EPGPPYTTD--EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred CCCCCCCcc--hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHh
Confidence 997665554 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 751 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K 751 (1464)
||++++..|||||||||||+||||++||+||+||+||||+.|+||++|||||||+|+|.||||||++||||+|+++|..|
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc-----cccCCCHHHHHHHHHhchhhhhcccCccCCCcccccCCHHHHHHHhccCCCCCcccCCC--Ccc
Q 000482 752 MVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD--DED 824 (1464)
Q Consensus 752 ~~L~~~Vig~~-----~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~d~~id~il~r~~~~~~~~~~~--~~~ 824 (1464)
+.|+++||+.. +...++++++..|+++|+..+|...+.+ .++ |||.||.|++..+.+.... ..+
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~--------~~d-Did~il~~~e~kt~e~~~~~~~~~ 683 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKEST--------ISD-DIDRILERGEEKTAELNAKEAKLG 683 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccc--------cch-hHHHHHHhhhhhccCcchHHHhhC
Confidence 99999999543 2345789999999999999999876643 234 9999999999777664321 011
Q ss_pred hhhHHhHh---hhhcccchhHHHHHHHHHHHHHHHhhccCCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 000482 825 EDGFLKAF---KVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMV 901 (1464)
Q Consensus 825 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~ 901 (1464)
.++ +..| .+.+|+..+- .+. .. . . .|-+..+..-......-...+..|-|..|++.
T Consensus 684 ~~~-~~~~~~~~~y~~eG~d~----~ek--~~--~----------~--~wiep~krerk~~d~y~r~~l~~g~~~P~~~~ 742 (971)
T KOG0385|consen 684 ESD-LRNFGMISVYNFEGEDY----KEK--QS--L----------F--KWIEPPKRERKANDAYFREALRVGEPPPKQPE 742 (971)
T ss_pred cch-hhhcCcceeeccCCcch----hhh--hh--h----------h--hhcCCchhhhhhhhhHHHHHHhcCCCCCCCcc
Confidence 111 1222 2333332111 000 00 0 0 03221111000000011122334444444443
Q ss_pred ccchhhc-ccccccCCCCcccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCCCcccc---ccchhhcCCChHHHH
Q 000482 902 SVEEDDL-AGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRA 977 (1464)
Q Consensus 902 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lte~e---~~~l~v~GF~~w~Rr 977 (1464)
+.+..-+ ..+.+.. +.+-.+|.. ...+. ......|||.+| ++.++.+||++|++|
T Consensus 743 ~~d~qf~p~~L~el~-~kei~~~~k------------------~~e~~--kin~~~~lt~ee~~~k~~ll~~gft~w~k~ 801 (971)
T KOG0385|consen 743 VQDFQFFPKRLFELL-EKEIEYYRK------------------TIEQK--KINNAEPLTQEEEEEKEELLSQGFTNWTKR 801 (971)
T ss_pred ccccccCcHHHHHHH-HHHHHHHHH------------------HHHHH--hccCCCCCCcHHHhhhhhhhhccccchhhh
Confidence 2110000 0111100 000001110 00111 223346777654 679999999999999
Q ss_pred H---HHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccCCCCcCccchhHHHHHHHHHHHHH
Q 000482 978 A---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIR 1054 (1464)
Q Consensus 978 ~---Fv~a~~kyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~~~~~E~i~d~~~~~d~i~k~~~k~~~vl~Ri~~~~ll~ 1054 (1464)
+ |++++.|||++++ +.|++++.+ |++||.+|+++||++|.| ++|+++++..|++|+.+++.. .-++.+|.
T Consensus 802 df~~fi~a~eKygr~di--~~ia~~~e~-~~eev~~y~rvfwer~~e-l~d~ek~~~~ie~~e~~i~r~---~~~~~~ld 874 (971)
T KOG0385|consen 802 DFNQFIKANEKYGRDDI--ENIAAEVEG-TPEEVGEYARVFWERLEE-LSDIEKIIYQIERGEKRIQRG---DSIKKALD 874 (971)
T ss_pred hHHHHHHHhhccCcchh--hhhHHhhcC-CHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhhhHhhhhHH---HHHHHHHh
Confidence 6 5677889999876 589999998 999999999999999996 999999999999998888764 45678999
Q ss_pred HHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHHHHHhhcccc---hHHhhhCc--------ccChHHHHHH
Q 000482 1055 DKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGR---WQAIVDDK--------DLKVQEVICQ 1123 (1464)
Q Consensus 1055 ~Kv~~~~~~p~~~~~~~~~~~~y~~~~~~~~w~~eeDr~LL~~i~k~Gyg~---We~Ik~D~--------~l~l~~~i~~ 1123 (1464)
.|+.+|. .| +++.+.|+.+ +++.|++++|+||+||+||+||++ |+.+++.. +|++.++..+
T Consensus 875 ~k~~~~k-~p------~~l~i~~~~n-k~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~~ 946 (971)
T KOG0385|consen 875 DKIARYK-AP------HQLRIQYGTN-KGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTAM 946 (971)
T ss_pred hhHhhhc-Cc------hheeeeeccc-cCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhHH
Confidence 9999997 55 4578899765 889999999999999999999998 88877655 8999999999
Q ss_pred HhcCCCCCCCC
Q 000482 1124 ELNLPFINLPV 1134 (1464)
Q Consensus 1124 e~~~~~~~~~~ 1134 (1464)
|+..+|++++.
T Consensus 947 el~Rr~ntli~ 957 (971)
T KOG0385|consen 947 ELQRRCNTLIT 957 (971)
T ss_pred HHHhcCCeeEE
Confidence 99999998875
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.7e-125 Score=1210.32 Aligned_cols=787 Identities=37% Similarity=0.599 Sum_probs=632.6
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEccccHHHHH
Q 000482 274 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 351 (1464)
Q Consensus 274 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~--~~~p~LIVvP~sll~qW~ 351 (1464)
..+..+|.++. ++|||||++||+||+.++.++.+||||||||||||+|+|+++.++... ..+|+|||||++++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 44667899998 799999999999999999999999999999999999999999998753 346999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCce
Q 000482 352 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 431 (1464)
Q Consensus 352 ~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w 431 (1464)
+||.+|+|.+++++|+|+...|..+....+ ...+|+|+||||+++.++...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999988876655322 124689999999999999999999999
Q ss_pred eEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHH
Q 000482 432 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 508 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~---~~~~~i~ 508 (1464)
++|||||||+|||..|+++++++.+.+.+||+|||||+||++.|||+||+||.|+.|++...|..+|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999642 3456788
Q ss_pred HHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000482 509 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 588 (1464)
Q Consensus 509 ~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~ 588 (1464)
.|+.+|+||++||+|.+|...|||+.+.+++|.||+.|+.+|+.++.+....++.+ +....+++++|+||+||+||||+
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999888777653 34567899999999999999999
Q ss_pred cCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHH
Q 000482 589 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 668 (1464)
Q Consensus 589 ~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~ 668 (1464)
.+.++...... ...++..|+|+.+|+++|..+...|+||||||||+.++++|+++|..+|++|++|+|+++..+|+.+
T Consensus 452 ~~~ep~~~~~~--~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPYTT--GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcccc--hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 88776544332 3578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000482 669 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 748 (1464)
Q Consensus 669 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a 748 (1464)
|++||++++..++||+||+|||+||||+.||+||+||+||||+.++||+||||||||+++|.||||++++||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc---cccCCCHHHHHHHHHhchhhhhcccCccCCCcccccCCHHHHHHHhccCCCCCcccCC--CCc
Q 000482 749 KKKMVLEHLVVGRL---KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASL--DDE 823 (1464)
Q Consensus 749 ~~K~~L~~~Vig~~---~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~d~~id~il~r~~~~~~~~~~--~~~ 823 (1464)
.+|+.|+..|++.. ....+++++|.+|+++|++.+|+..+ ..++|+|||.||+|++..+.+... ...
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~--------~~~~~~did~il~~~~~~~~~~~~~~~~~ 681 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD--------STITDEDIDRIIAKGEEATAELDAKMKKF 681 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccC--------CCCCHHHHHHHHHhcHHHHHHHHHHHHHh
Confidence 99999999999543 23568899999999999999996443 135899999999999876654221 001
Q ss_pred chhhHHhHhhhh----cccchhHHHHHHHH-HHHHHHHhhccCCCCccchhhHHHHHHHHH----------HHHHHHH-h
Q 000482 824 DEDGFLKAFKVA----NFEYIEEVEAAAEE-EAQKLAAENKSSMSNSERSSYWEELLKDRY----------EVHKVEE-F 887 (1464)
Q Consensus 824 ~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----------~~~~~~~-~ 887 (1464)
..+. + .|++. -|++..+......+ ...+... ..|-+. +.+. ..+.... .
T Consensus 682 ~~~~-~-~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------~~~~~~-~~re~~~~~~~~~~~~~~~~~~~ 746 (1033)
T PLN03142 682 TEDA-I-KFKMDDTAELYDFDDEDDKDENKLDFKKIVS------------DNWIDP-PKRERKRNYSESEYFKQAMRQGA 746 (1033)
T ss_pred chhh-h-cccccCCcceeeecCccccchhhhhHhhhcc------------cccccc-chhhhhcccchhHHHHHHHhcCC
Confidence 1111 2 24332 12221111000000 0000000 012111 0000 0000000 0
Q ss_pred hhcCCCCCCcccccccchhhc--ccccccCCCCcccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCCCcccc---
Q 000482 888 NALGKGKRSRKQMVSVEEDDL--AGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE--- 962 (1464)
Q Consensus 888 ~~~~~~~r~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lte~e--- 962 (1464)
..-.+.+|..|++...+..-+ .++.++..- +-..|.....+++ ... .. .. ....+...|||++|
T Consensus 747 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~l~~~-e~~~~~~~~~~~~-----~~~--~~-~~--~~~~~~~~~lt~~e~~~ 815 (1033)
T PLN03142 747 PAKPKEPRIPRMPQLHDFQFFNVQRLTELYEK-EVRYLMQAHQKGQ-----LKD--TI-DV--AEPEEPGDPLTAEEQEE 815 (1033)
T ss_pred cccCCCCCCCCCCCCccccCCCHHHHHHHHHH-HHHHHhccccCCc-----hhh--hh-hh--ccccccCCCCCHHHHHH
Confidence 011223333343322110000 011111100 0011111000000 000 00 01 12334467899887
Q ss_pred ccchhhcCCChHHHHH---HHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccCCCCcCccc
Q 000482 963 GRSFRVLGFSQNQRAA---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLR 1039 (1464)
Q Consensus 963 ~~~l~v~GF~~w~Rr~---Fv~a~~kyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~~~~~E~i~d~~~~~d~i~k~~~k 1039 (1464)
+++|+.+||++|+||+ ||++|.||||.++ +.||.++.+||++||++|+++||+||.| ++||++++..|++|+.|
T Consensus 816 k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~--~~i~~~~~~k~~~ev~~y~~~f~~~~~~-~~~~~~~~~~ie~~e~~ 892 (1033)
T PLN03142 816 KEQLLEEGFSTWSRRDFNAFIRACEKYGRNDI--KSIASEMEGKTEEEVERYAKVFWERYKE-LNDYDRIIKNIERGEAR 892 (1033)
T ss_pred HHHHHhcCcCcccHHHHHHHHHHHHHhCHhHH--HHHHHHhcCCCHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHH
Confidence 5799999999999995 6889999998776 6899999999999999999999999996 99999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHHHHHhhcccchHHhhhCc------
Q 000482 1040 IQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK------ 1113 (1464)
Q Consensus 1040 ~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~~~~~y~~~~~~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~------ 1113 (1464)
+++. ...+.+|++||+.|. +| + .+|.++|+ .++++.|++++||||||++|+||||+||.|+.+.
T Consensus 893 ~~~~---~~~~~~~~~k~~~~~-~p---~--~~l~~~~~-~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f 962 (1033)
T PLN03142 893 ISRK---DEIMKAIGKKLDRYK-NP---W--LELKIQYG-QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLF 962 (1033)
T ss_pred HHHH---HHHHHHHHHHHHHcc-Cc---H--HHceeecC-CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCce
Confidence 7663 456799999999998 77 4 56788996 4678999999999999999999999999987776
Q ss_pred --ccChHHHHHHHhcCCCCCCCC
Q 000482 1114 --DLKVQEVICQELNLPFINLPV 1134 (1464)
Q Consensus 1114 --~l~l~~~i~~e~~~~~~~~~~ 1134 (1464)
+|++.++..+|++.||.+|+.
T Consensus 963 ~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 963 RFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred eeehhhccCCHHHHHHHHHHHHH
Confidence 899999999999999998875
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.3e-94 Score=873.93 Aligned_cols=506 Identities=44% Similarity=0.725 Sum_probs=447.3
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEccccHHHHH
Q 000482 274 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 351 (1464)
Q Consensus 274 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~--~~~p~LIVvP~sll~qW~ 351 (1464)
.....||..+.||+|++||+.||.||..++.++-+||||||||||||+|+|+++.||.+. ..||+|||||+++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 456789999999999999999999999999999999999999999999999999999875 357999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCce
Q 000482 352 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 431 (1464)
Q Consensus 352 ~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w 431 (1464)
.||.+|+|.+..+.|.|+.+.|..+..- ...++|+|++|||+.+.++...|.+|.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------------QRHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHH------------------------HhcccceeeeeeHHHhcCCHHHHhccCC
Confidence 9999999999999999999999865442 1237999999999999999999999999
Q ss_pred eEEEeccccccCCcchHHHHHHH-hcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---------
Q 000482 432 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI--------- 501 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~~Sk~~~al~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~--------- 501 (1464)
.++||||+||+||..+++...+. .+.+.+||||||||+||++.|||+||||+.|.+|.+...|.+||...
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 67899999999999999999999999999999999999999999642
Q ss_pred -hhH---HHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHH
Q 000482 502 -NQE---EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT--RRGGAQISLINVV 575 (1464)
Q Consensus 502 -~~~---~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~--~~~~~~~~l~nil 575 (1464)
+.+ -.+.+||++|+||+|||.|++|+..||.+.+.++.|.||..|+.+|+.+.....-... ++.+....++|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 111 2578999999999999999999999999999999999999999999998654322222 2445567899999
Q ss_pred HHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEE
Q 000482 576 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 655 (1464)
Q Consensus 576 ~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~r 655 (1464)
|+|||||||||++..++......... ..|+..+||+.+|+++|.+|++.|||||.||||++++++|++||..++++|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998876554333222 67899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEE
Q 000482 656 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 735 (1464)
Q Consensus 656 idGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLv 735 (1464)
+||+|+.++|-..++.||.|+++.|+||+||+|||+|+||++||+|||||+||||+.++||.+|+|||||++.|.|+||+
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhcc--ccccCCCHHHHHHHHHhchhhhhcccCccCCCcccccCCHHHHHHHhccCC
Q 000482 736 TRGSIEERMMQMTKKKMVLEHLVVGR--LKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 812 (1464)
Q Consensus 736 t~~TvEE~I~~~a~~K~~L~~~Vig~--~~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~d~~id~il~r~~ 812 (1464)
+.++|||.|++.+..|+..+..|+.. .+. +-+.++=+.+|. .+...++++.+ .-.-+++.|..+|.|++
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn-~st~~eR~~~Le----~~l~~~~~~~~---~~v~~~~~ln~~larse 906 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDN-KSTAEEREMFLE----QLLEMEGDEEE---EEVPDDEVLNSMLARSE 906 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccC-CCcHHHHHHHHH----HHHhCCCcccc---ccCCcHHHHHHHHhcch
Confidence 99999999999999999999999944 333 333344444432 23333333222 12346788999999874
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-91 Score=835.42 Aligned_cols=464 Identities=44% Similarity=0.670 Sum_probs=406.6
Q ss_pred ccCCCCCC-CCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHH
Q 000482 276 YEHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 353 (1464)
Q Consensus 276 ~~~~P~~~-~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~sll~qW~~E 353 (1464)
...||..+ ++.+|+|||+.|||||.-++.++-+||||||||||||+|+|||+++|...+ .||+|||||.||+.||.+|
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH
Confidence 34577766 467999999999999999999999999999999999999999999999875 5699999999999999999
Q ss_pred HHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhcccCCCc
Q 000482 354 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 430 (1464)
Q Consensus 354 ~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~---d~~~L~~i~ 430 (1464)
|.+|||.+.|..|+|+..+|..++..-- .....|||++|||..+.. |+.+|+..+
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------------~~~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK----------------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh----------------------ccCCCccEEEEEeecccCChHHHHHHHhcc
Confidence 9999999999999999999998876411 123589999999999854 678899999
Q ss_pred eeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCCh-HHHHHHHhhhh-------
Q 000482 431 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL-EEFQEEFKDIN------- 502 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~-~~F~e~f~~~~------- 502 (1464)
|+++|.||+|.|||..|.+++.|..+.+++||||||||+|||+.||++||.|+.|..|.+. +++..-|....
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e 604 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE 604 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999754 56666664322
Q ss_pred ----hHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Q 000482 503 ----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVM 576 (1464)
Q Consensus 503 ----~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~--~~~l~nil~ 576 (1464)
..+.+.+-..+++||+|||.|.+|++.||||..++.+|+|+..|+.+|..+++.....++....+ ..+ .+++|
T Consensus 605 ~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlm 683 (941)
T KOG0389|consen 605 NALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLM 683 (941)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHH
Confidence 13578899999999999999999999999999999999999999999999987653333322222 112 57999
Q ss_pred HHHHHhCCcccccCCCCC---------------ccchh-----HHH--------H----------------HHHhhhhHH
Q 000482 577 ELRKLCCHPYMLEGVEPD---------------IEDTN-----ESF--------K----------------QLLESSGKL 612 (1464)
Q Consensus 577 ~LRk~c~HP~L~~~~e~~---------------~~~~~-----~~~--------~----------------~li~~SgKl 612 (1464)
+|||+++||.|+.....+ ....+ +.. . .++-.|||.
T Consensus 684 qlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 684 QLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKC 763 (941)
T ss_pred HHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhH
Confidence 999999999998543211 00000 000 0 123369999
Q ss_pred HHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccc
Q 000482 613 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 692 (1464)
Q Consensus 613 ~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~G 692 (1464)
..|.+||+++++.|+||||||||+.|||||+-+|...|++|+|+||+|.-..||.+|+.||. +.+.|||||||+|||.|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999997 45678999999999999
Q ss_pred cCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 000482 693 INLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 763 (1464)
Q Consensus 693 INL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~~~ 763 (1464)
|||++||+|||+|.++||..+.||.+||||+||+|+|+|||||+++||||.|+++|++|+.|+..|.+..+
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999975543
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=4.8e-90 Score=832.10 Aligned_cols=471 Identities=40% Similarity=0.715 Sum_probs=418.1
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEccccHHHHHHHHHHHCCC
Q 000482 283 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFATWAPQ 360 (1464)
Q Consensus 283 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~--~~~p~LIVvP~sll~qW~~E~~k~~P~ 360 (1464)
+-.|.||.||..|++||..+|.++-|||||||||||||||+|+++++|... ++||+|||||.+++-||.-||++|||+
T Consensus 611 LLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPg 690 (1958)
T KOG0391|consen 611 LLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPG 690 (1958)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCc
Confidence 334899999999999999999999999999999999999999999999754 568999999999999999999999999
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
++++.|+|+...|+.-++- |. ....|||+||||..+..+...|+..+|.|+|+||||
T Consensus 691 lKILTYyGs~kErkeKRqg-W~----------------------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQG-WA----------------------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQ 747 (1958)
T ss_pred ceEeeecCCHHHHHHHhhc-cc----------------------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhh
Confidence 9999999999998764431 21 135799999999999999999999999999999999
Q ss_pred ccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh----------hHHHHHHH
Q 000482 441 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------QEEQISRL 510 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~----------~~~~i~~L 510 (1464)
+|||..|+.+++|.+|++.+||||||||+||++.|||+|++||+|..|.+...|..||...- ....+.+|
T Consensus 748 nIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RL 827 (1958)
T KOG0391|consen 748 NIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRL 827 (1958)
T ss_pred hhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997521 24678999
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 590 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~ 590 (1464)
|++|+||+|||+|.||++.||.|.|++|+|.||..|+.+|..++.+.-..-+-..|+-.+.+|++|+||||||||-||+.
T Consensus 828 HkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEp 907 (1958)
T KOG0391|consen 828 HKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEP 907 (1958)
T ss_pred HHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCC
Confidence 99999999999999999999999999999999999999999998876555555677889999999999999999977521
Q ss_pred CC-----------------------------C---------------Cc-------------------c-----------
Q 000482 591 VE-----------------------------P---------------DI-------------------E----------- 596 (1464)
Q Consensus 591 ~e-----------------------------~---------------~~-------------------~----------- 596 (1464)
-- + .. .
T Consensus 908 Rpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~ 987 (1958)
T KOG0391|consen 908 RPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFA 987 (1958)
T ss_pred CCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCcccc
Confidence 00 0 00 0
Q ss_pred ---c-----------hhH--------------------------------------------------------------
Q 000482 597 ---D-----------TNE-------------------------------------------------------------- 600 (1464)
Q Consensus 597 ---~-----------~~~-------------------------------------------------------------- 600 (1464)
. ..+
T Consensus 988 g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t 1067 (1958)
T KOG0391|consen 988 GAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPT 1067 (1958)
T ss_pred ccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccc
Confidence 0 000
Q ss_pred ----------------------------------------------------------------------HHH-------
Q 000482 601 ----------------------------------------------------------------------SFK------- 603 (1464)
Q Consensus 601 ----------------------------------------------------------------------~~~------- 603 (1464)
.+.
T Consensus 1068 ~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~A 1147 (1958)
T KOG0391|consen 1068 QPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNA 1147 (1958)
T ss_pred cccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccC
Confidence 000
Q ss_pred -----------------------------------------HHHh-----------------------------------
Q 000482 604 -----------------------------------------QLLE----------------------------------- 607 (1464)
Q Consensus 604 -----------------------------------------~li~----------------------------------- 607 (1464)
.+|.
T Consensus 1148 Pvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~q 1227 (1958)
T KOG0391|consen 1148 PVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQ 1227 (1958)
T ss_pred cccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHH
Confidence 0000
Q ss_pred ------------------------------hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEE
Q 000482 608 ------------------------------SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERID 657 (1464)
Q Consensus 608 ------------------------------~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~rid 657 (1464)
.+||++.|.-||+.|+..|||||||+||+.|||+|+.||.++||-|.|||
T Consensus 1228 lrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLD 1307 (1958)
T KOG0391|consen 1228 LRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLD 1307 (1958)
T ss_pred HHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEec
Confidence 28899999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 658 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 658 Gs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
|+++.++||.++++||+ +...|||||||+.||+||||+.||||||||+||||..|.||.+|||||||++.|+|||||+.
T Consensus 1308 g~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1308 GNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred CCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 99999999999999998 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccc--cccCCCHHHHHHHHH
Q 000482 738 GSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIR 777 (1464)
Q Consensus 738 ~TvEE~I~~~a~~K~~L~~~Vig~~--~~~~~~~~el~~ll~ 777 (1464)
+||||.|+..+..|..|+.++++.. ...-+.+..+.+||.
T Consensus 1387 ~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1387 RTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred chHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhc
Confidence 9999999999999999999999543 334456666666653
No 7
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=4.9e-92 Score=861.26 Aligned_cols=625 Identities=51% Similarity=0.841 Sum_probs=543.3
Q ss_pred cccccccccccccCCCCeEecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCC--ccccccccccccCccC-C---CC
Q 000482 48 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG-D---SD 121 (1464)
Q Consensus 48 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~--didkiL~wr~~P~~~~-~---~~ 121 (1464)
+.+.+...|.+|+++|.+++|++|+.+||.+|+.||+...|.+.|.|+.|..+.+ .+.+|+.|+|+|+... . ..
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~ 121 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGV 121 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCc
Confidence 5567889999999999999999999999999999999999999999999977765 7999999999988754 1 11
Q ss_pred cccccchhhhHHHHHhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhhhhccC--------C-----C-c--hhh
Q 000482 122 VSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSN--------N-----N-A--EED 185 (1464)
Q Consensus 122 ~~~~~~k~~~~~EYLVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~~f~kk~~~~--------~-----~-~--~ed 185 (1464)
...........++|+|||+|.||+||.|+++.++.......+. -+..++...... . . . ++.
T Consensus 122 ~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r 198 (696)
T KOG0383|consen 122 ISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPV---ELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEER 198 (696)
T ss_pred cCCcccccchhhhcccccccCCccchhHHHHHHhhhhcccchH---hhhhhhhcccCccccccccccCccccccccchhh
Confidence 1222344566799999999999999999999998865432211 122221111100 0 0 0 111
Q ss_pred --hccCCCCccchhhhhhhc-cCCCCceEEEEEeccccccccccccc-ccccchHHHHHHHHHhhcccccccCcCCCCCc
Q 000482 186 --FVAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKSSPQ 261 (1464)
Q Consensus 186 --~~~i~pe~~~veRII~~r-~~~~~~eyLVKWkgL~Y~~~TWE~~~-~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 261 (1464)
.+.+.|+|+.+.||+.++ ...+...|+|||+.|+|++++|+.+. ++..++..+++|....... ...+ .
T Consensus 199 ~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~-~~~k--~----- 270 (696)
T KOG0383|consen 199 FLLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKP-TVSK--D----- 270 (696)
T ss_pred hhheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCcc-cccc--c-----
Confidence 245789999999999999 45678899999999999999999887 7788888888888654431 1000 0
Q ss_pred cccccCCCCcccccccCCCCCCC--CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC--Cc
Q 000482 262 DVTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SP 337 (1464)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~P~~~~--g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~--~p 337 (1464)
.. .........+..+|.++. ++.|++||++|+||++..|..+..+|||||||+|||++++.|+..+..... +|
T Consensus 271 --~~-~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P 347 (696)
T KOG0383|consen 271 --LK-SNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGP 347 (696)
T ss_pred --cc-ccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCC
Confidence 00 002345677889999987 599999999999999999999999999999999999999999999988643 59
Q ss_pred EEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHH
Q 000482 338 HLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYE 417 (1464)
Q Consensus 338 ~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe 417 (1464)
+||++|.+++.+|.+|+..|+|.+.++.|+|+.+.|.+++++++.+.+...+.. ......+.....+|+|.+++|+
T Consensus 348 ~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~s~~ 423 (696)
T KOG0383|consen 348 PLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLPSYE 423 (696)
T ss_pred ceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccC----CccccccchhhcccccCCCchh
Confidence 999999999999999999999999999999999999999999998877643322 1222233445679999999999
Q ss_pred HHHhhhcccCCCceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHH
Q 000482 418 MINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 497 (1464)
Q Consensus 418 ~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~ 497 (1464)
++..+...+..+.|.++|+||+||+||..|+++..+..+...++++|||||+|||+.||+++||||.|+.|.+...|.+.
T Consensus 424 ~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~ 503 (696)
T KOG0383|consen 424 TIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEE 503 (696)
T ss_pred hcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 000482 498 FKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 577 (1464)
Q Consensus 498 f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~ 577 (1464)
|.++..++.+..||.++.|+|+||.|.|+++.+|+|.+.+++|+|++.|+++|+.++++++..+.. ++...+++|++|+
T Consensus 504 ~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~me 582 (696)
T KOG0383|consen 504 FHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVME 582 (696)
T ss_pred cchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 6778899999999
Q ss_pred HHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEE
Q 000482 578 LRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERID 657 (1464)
Q Consensus 578 LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~rid 657 (1464)
|||+|+|||+++..++...........++.+++|+.+|.+++++++..||||+||+||+.++|+|+++|...+ .|.|||
T Consensus 583 l~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~d 661 (696)
T KOG0383|consen 583 LRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERID 661 (696)
T ss_pred HHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceecc
Confidence 9999999999999777777777777899999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEeeccccccc
Q 000482 658 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 692 (1464)
Q Consensus 658 Gs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~G 692 (1464)
|..+..+|+.+|++||++++..||||+||||||+|
T Consensus 662 G~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 662 GPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999999999998
No 8
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=8.8e-89 Score=793.82 Aligned_cols=456 Identities=45% Similarity=0.760 Sum_probs=410.5
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC--CCcEEEEEccccHHHHHHH
Q 000482 276 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWERE 353 (1464)
Q Consensus 276 ~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~--~~p~LIVvP~sll~qW~~E 353 (1464)
.-.||..+. ++|+.||+.|+|||..++.+|.+||||||||||||+|+|+++++|.+.. .||||||+|.|+|.||..|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 446788887 8999999999999999999999999999999999999999999998753 5799999999999999999
Q ss_pred HHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeE
Q 000482 354 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 433 (1464)
Q Consensus 354 ~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~ 433 (1464)
|.+|+|.++++.|.|+..+|.+++.+ +.+.+ . -.....|||+||||+++..|...|++++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKf--w~rKn---m------------Y~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKF--WNRKN---M------------YRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHh--cchhh---h------------hccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 99999999999999999999999874 21111 1 1134689999999999999999999999999
Q ss_pred EEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh----------hh
Q 000482 434 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI----------NQ 503 (1464)
Q Consensus 434 VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~----------~~ 503 (1464)
+|+|||+-||...|.+++.|..|+++.||||||||+||++.|||+||||++|..|.+..+|.+||..- -.
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999641 23
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000482 504 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 583 (1464)
Q Consensus 504 ~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~ 583 (1464)
+.++.+||.+|+||||||.|++|...|..+.++.|+|.||..|+.+|+.|..... ...+.+++|+|||+||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999866533 1233469999999999
Q ss_pred CcccccCCCCCcc-------------------------c-----------------------------------------
Q 000482 584 HPYMLEGVEPDIE-------------------------D----------------------------------------- 597 (1464)
Q Consensus 584 HP~L~~~~e~~~~-------------------------~----------------------------------------- 597 (1464)
||-||+..++... .
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988754332100 0
Q ss_pred ------------hh------------------HH----------------------------------------------
Q 000482 598 ------------TN------------------ES---------------------------------------------- 601 (1464)
Q Consensus 598 ------------~~------------------~~---------------------------------------------- 601 (1464)
.. +.
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 00 00
Q ss_pred ----------HHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHH
Q 000482 602 ----------FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 602 ----------~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~ 671 (1464)
+..++..|||+..|+.||.+|++.|||||+|.||+.|+|+|++||..+||.|.|+||+.+..+|..+|..
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 0001234899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 751 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K 751 (1464)
|++ ++.||||+||||||+||||++||+|||||+||||..+.||++||||.||++.|+||||++++||||+|++++.+|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 997 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000482 752 MVLEHLVVG 760 (1464)
Q Consensus 752 ~~L~~~Vig 760 (1464)
....++|+.
T Consensus 1168 ~~vQq~Vm~ 1176 (1185)
T KOG0388|consen 1168 DEVQQMVMH 1176 (1185)
T ss_pred HHHHHHHHc
Confidence 999999983
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4e-87 Score=798.03 Aligned_cols=487 Identities=37% Similarity=0.628 Sum_probs=416.0
Q ss_pred ccccccCCCCCCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC--CCcEEEEEccccHHH
Q 000482 272 EFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRN 349 (1464)
Q Consensus 272 ~~~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~--~~p~LIVvP~sll~q 349 (1464)
.+...-..|.++. ..|+|||.+||+||..+++++.||||+||||||||||+|+||+.|.+.+ .+|+|||||.+++.|
T Consensus 191 ~~~~~~~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~q 269 (923)
T KOG0387|consen 191 KLEGGFKVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQ 269 (923)
T ss_pred cccccccccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHH
Confidence 3343334566554 5799999999999999999999999999999999999999999998763 469999999999999
Q ss_pred HHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC
Q 000482 350 WEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI 429 (1464)
Q Consensus 350 W~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i 429 (1464)
|.+||++|+|.++|.+|||+...-. ++.+.....+ +.. ..+.....-+|+||||+.+......+..+
T Consensus 270 W~~E~~~w~p~~rv~ilh~t~s~~r----~~~~~~~~~~-------~~~--L~r~~~~~~~ilitty~~~r~~~d~l~~~ 336 (923)
T KOG0387|consen 270 WMKEFQTWWPPFRVFILHGTGSGAR----YDASHSSHKK-------DKL--LIRKVATDGGILITTYDGFRIQGDDLLGI 336 (923)
T ss_pred HHHHHHHhCcceEEEEEecCCcccc----cccchhhhhh-------hhh--heeeecccCcEEEEehhhhcccCcccccc
Confidence 9999999999999999999876321 1110000000 000 00112245679999999999999999999
Q ss_pred ceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh-------
Q 000482 430 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN------- 502 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~------- 502 (1464)
.|+++|+||+|+|||++|+++.+++.+++.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|...-
T Consensus 337 ~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaN 416 (923)
T KOG0387|consen 337 LWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYAN 416 (923)
T ss_pred cccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996421
Q ss_pred --------hHHHHHHHHHhhhhhhHHHHHhhHhh-cCCCceeeeecccCCHHHHHHHHHHHHHHH--HHHHhcCCchhhH
Q 000482 503 --------QEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNY--QILTRRGGAQISL 571 (1464)
Q Consensus 503 --------~~~~i~~L~~~L~p~~LRR~K~dv~~-~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~--~~l~~~~~~~~~l 571 (1464)
.......|+.++.||+|||+|+||.. .||.|.+++|+|.||+.|+.+|..++.... .+++. ....
T Consensus 417 As~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng----~~~~ 492 (923)
T KOG0387|consen 417 ASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG----KRNC 492 (923)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC----Cccc
Confidence 12345579999999999999999998 999999999999999999999999986432 22222 2233
Q ss_pred HHHHHHHHHHhCCcccccCC---CCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHh-
Q 000482 572 INVVMELRKLCCHPYMLEGV---EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT- 647 (1464)
Q Consensus 572 ~nil~~LRk~c~HP~L~~~~---e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~- 647 (1464)
+--+.-||++||||-|+..- +...++. ...+..||||.+|.++|...+.+|+|||+|||...|||||+.+|.
T Consensus 493 l~Gi~iLrkICnHPdll~~~~~~~~~~~D~----~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~ 568 (923)
T KOG0387|consen 493 LSGIDILRKICNHPDLLDRRDEDEKQGPDY----EGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR 568 (923)
T ss_pred eechHHHHhhcCCcccccCcccccccCCCc----CCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh
Confidence 44456699999999999763 2111221 245678999999999999999999999999999999999999998
Q ss_pred hcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC
Q 000482 648 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 648 ~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 727 (1464)
..||.|+|+||.|+...|+.+|++||++. ..+||||+|++||+|+||+.||+||||||+|||+.|.||..||+||||+|
T Consensus 569 ~~~ysylRmDGtT~~~~R~~lVd~Fne~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 569 AKGYSYLRMDGTTPAALRQKLVDRFNEDE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred cCCceEEEecCCCccchhhHHHHhhcCCC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCcc
Confidence 79999999999999999999999999755 46789999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHHhchh
Q 000482 728 KVMIFRLITRGSIEERMMQMTKKKMVLEHLVV-GRLKAQNINQEELDDIIRYGSK 781 (1464)
Q Consensus 728 ~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vi-g~~~~~~~~~~el~~ll~~ga~ 781 (1464)
.|.||||++.+||||+||.++--|..|.+.++ +.....-+...+|.+|+..+..
T Consensus 648 dV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 648 DVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred ceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCC
Confidence 99999999999999999999999999999888 4455566788899999887654
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=7.6e-81 Score=764.35 Aligned_cols=465 Identities=38% Similarity=0.628 Sum_probs=404.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--------CCCcEEEEEccccHHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~--------~~~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
.+||.||.+|||||.++...+-+|||||+||||||+|+|++++.=... ...|.|||||.++..+|..|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 579999999999999999999999999999999999999998754322 233899999999999999999999
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEec
Q 000482 358 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 437 (1464)
Q Consensus 358 ~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvD 437 (1464)
+|-++|+.|.|....|..++.. ..+.+|+||||+.+++|...|.++.|.|+|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877653 24678999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---------------h
Q 000482 438 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---------------N 502 (1464)
Q Consensus 438 EAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~---------------~ 502 (1464)
|+|-|||..++++++++.+.++|||+|||||+|||+.|||+|++||+|+.+++-..|.++|... .
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999632 1
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHh-------cCC-chhhHHHH
Q 000482 503 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 574 (1464)
Q Consensus 503 ~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~-------~~~-~~~~l~ni 574 (1464)
..-.+..||+.+=|||+||+|.||+++||||..+-.+|+|++.|+++|+.+..+....... ..+ .....+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 2246788999999999999999999999999999999999999999999998873222211 111 14567788
Q ss_pred HHHHHHHhCCcccccCC-CCCccchhHHH------HHHHhhhhHHHHHHHHHHHHHh--------------cCceEEEEe
Q 000482 575 VMELRKLCCHPYMLEGV-EPDIEDTNESF------KQLLESSGKLQLLDKMMVKLKE--------------QGHRVLIYS 633 (1464)
Q Consensus 575 l~~LRk~c~HP~L~~~~-e~~~~~~~~~~------~~li~~SgKl~~L~kLL~~l~~--------------~g~KVLIFS 633 (1464)
+..|||.|+||.|.-.. -++........ -+-+..|+|+.+|..+|..+-- .+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999988553 12211111111 1226789999999999987631 479999999
Q ss_pred cchhhHHHHHHHHhhc---CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCCh
Q 000482 634 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 710 (1464)
Q Consensus 634 q~~~~LdiL~~~L~~~---g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP 710 (1464)
|+..|+|++++-|-.. .+.|.|+||++++.+|++++.+||++++-. |+|++|.+||+|+|||.||||||++-||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptID-vLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCcee-EEEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999988543 567899999999999999999999876654 599999999999999999999999999999
Q ss_pred hcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccc--cCCCHHHHHHHHH
Q 000482 711 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQEELDDIIR 777 (1464)
Q Consensus 711 ~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~~~~--~~~~~~el~~ll~ 777 (1464)
.+|+|||+|||||||++.|+||||||+||+||+|+-.++-||..++.|++.-++ ..++-++|.+++.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999976433 3566677777654
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-69 Score=667.99 Aligned_cols=453 Identities=36% Similarity=0.559 Sum_probs=381.8
Q ss_pred CCCcHHHHHHHHHHHHhhc------cCCcEEEEecCCCchHHHHHHHHHHHHhCCC------CcEEEEEccccHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 353 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~------~~~~~ILADemGLGKTiqaIa~l~~l~~~~~------~p~LIVvP~sll~qW~~E 353 (1464)
..|||||.+|++||..+.. ..+|||+||+||+|||+|+|+||..+++..+ ...|||||.+++.+|.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999976553 4578999999999999999999999987642 478999999999999999
Q ss_pred HHHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCce
Q 000482 354 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 431 (1464)
Q Consensus 354 ~~k~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w 431 (1464)
|.+|.- .+....++|...+ ..+....+.+-. ......-|++.||+++..+...+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 5777777777765 111111111000 0123456999999999999999999999
Q ss_pred eEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------
Q 000482 432 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 502 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~--------- 502 (1464)
++||+||+|++||..|.++++|..+.+.+|++|||||+||++.|+|++|+|..|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred -----hHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 000482 503 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 577 (1464)
Q Consensus 503 -----~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~ 577 (1464)
.++.++.|..+...|++||+-....++||++.+++|.|.+++.|+.+|+.++... ......+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~----~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG----YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc----chhhHHHH
Confidence 1345888999999999999999999999999999999999999999999998764 1111111 15567788
Q ss_pred HHHHhCCcccccCCCCC-----ccchhHHH-H-------HHHhhhhHHHHHHHHHHHHHhc-CceEEEEecchhhHHHHH
Q 000482 578 LRKLCCHPYMLEGVEPD-----IEDTNESF-K-------QLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 643 (1464)
Q Consensus 578 LRk~c~HP~L~~~~e~~-----~~~~~~~~-~-------~li~~SgKl~~L~kLL~~l~~~-g~KVLIFSq~~~~LdiL~ 643 (1464)
|+++|+||.|+...+.. ........ . .-...|+|+..|..|+....+. -.++++.++++.++++++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 99999999998522111 11111000 0 0122489999999999666554 346666777889999999
Q ss_pred HHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhc
Q 000482 644 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 723 (1464)
Q Consensus 644 ~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 723 (1464)
..++.+|+.++|+||+++..+|+.+|+.||++.+..||||+|++|||+||||..|++||+||++|||+++.|||+||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccc
Q 000482 724 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 762 (1464)
Q Consensus 724 GQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~~ 762 (1464)
||+|+|+||||++.||+||+|++++..|..|...|++.-
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 999999999999999999999999999999999998653
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.2e-65 Score=613.03 Aligned_cols=471 Identities=33% Similarity=0.514 Sum_probs=383.5
Q ss_pred CCCcHHHHHHHHHHHHhh---------ccCCcEEEEecCCCchHHHHHHHHHHHHhC---CCCcEEEEEccccHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 353 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~---------~~~~~~ILADemGLGKTiqaIa~l~~l~~~---~~~p~LIVvP~sll~qW~~E 353 (1464)
..|+|||..||.||..+. ..|.|||||+-||||||+|+|+|+..++.. +...+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 579999999999996443 358899999999999999999999987643 45599999999999999999
Q ss_pred HHHHCCCC------eEEEEEcCh--hHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--
Q 000482 354 FATWAPQM------NVVMYVGTS--QARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-- 423 (1464)
Q Consensus 354 ~~k~~P~l------~vvvy~G~~--~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~-- 423 (1464)
|.+|.+++ .|..+...+ ..|..... .| ...-.|+|+.|++++...
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~-~W------------------------~~~ggVmIiGYdmyRnLa~g 801 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQ-RW------------------------QEDGGVMIIGYDMYRNLAQG 801 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHH-HH------------------------HhcCCEEEEehHHHHHHhcc
Confidence 99999853 222222211 22221111 11 012259999999986421
Q ss_pred -------------cccCCCceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCC
Q 000482 424 -------------ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 490 (1464)
Q Consensus 424 -------------~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~ 490 (1464)
..|..-..++||+||||-|||..|.+++++..+.+++||+|||||||||+.|++.+++|+.|+.+++
T Consensus 802 r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs 881 (1567)
T KOG1015|consen 802 RNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGS 881 (1567)
T ss_pred cchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccC
Confidence 1122335789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhh---------------HHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHH
Q 000482 491 LEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 555 (1464)
Q Consensus 491 ~~~F~e~f~~~~~---------------~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~ 555 (1464)
..+|..+|.+.-+ .....-|+.+|..++-|+--..+.++|||+.+++|.|.||+.|..+|..+++
T Consensus 882 ~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 882 IKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred cHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 9999999965321 1234568999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH---hcCCchhhHHHHHHHHHHHhCCcccccC------------------CC-CCc------------------
Q 000482 556 RNYQILT---RRGGAQISLINVVMELRKLCCHPYMLEG------------------VE-PDI------------------ 595 (1464)
Q Consensus 556 ~~~~~l~---~~~~~~~~l~nil~~LRk~c~HP~L~~~------------------~e-~~~------------------ 595 (1464)
.....-+ ++.+....|+.-+..|+++.+|||.+.- .. .+.
T Consensus 962 h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks 1041 (1567)
T KOG1015|consen 962 HLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKS 1041 (1567)
T ss_pred hccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccc
Confidence 3222111 1223456788888899999999986410 00 000
Q ss_pred -------------------------------------------c-------------------chhHHHHHH--------
Q 000482 596 -------------------------------------------E-------------------DTNESFKQL-------- 605 (1464)
Q Consensus 596 -------------------------------------------~-------------------~~~~~~~~l-------- 605 (1464)
. ++.+++..+
T Consensus 1042 ~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v 1121 (1567)
T KOG1015|consen 1042 GKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEV 1121 (1567)
T ss_pred cccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhh
Confidence 0 000111122
Q ss_pred HhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh----------------------cCCeEEEEEcCCCHH
Q 000482 606 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGGA 663 (1464)
Q Consensus 606 i~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~----------------------~g~~~~ridGs~s~~ 663 (1464)
+..||||.+|.+||....+-|.|+|||||....||+|++||.. +|..|.||||+++..
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 3459999999999999999999999999999999999999953 366799999999999
Q ss_pred HHHHHHHHHhccCCCc-eEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHH
Q 000482 664 ERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 742 (1464)
Q Consensus 664 eRq~~Id~Fn~~~s~~-~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE 742 (1464)
+|++..+.||++.+-+ .+||||||||++||||-+|++|||||-.|||..+.|+|-|++|+||+|+|+||||++.||+||
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 9999999999987654 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHHhchh
Q 000482 743 RMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSK 781 (1464)
Q Consensus 743 ~I~~~a~~K~~L~~~Vig~~~-~~~~~~~el~~ll~~ga~ 781 (1464)
+||.++-.|..+...|+++.. ...++.++|..|+.|...
T Consensus 1282 KIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 999999999999999997653 346888999998877643
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=3.9e-65 Score=579.13 Aligned_cols=468 Identities=30% Similarity=0.508 Sum_probs=379.4
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhhc-cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000482 276 YEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 354 (1464)
Q Consensus 276 ~~~~P~~~~g~~LrpyQlegvnwL~~~~~-~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~ 354 (1464)
-.+||..+. ..|.|||++|+.|+..... .-.|||||||||+|||||+|+++.. .-...|+|||||.-.+.||.+||
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHHH
Confidence 346777665 6799999999999965443 6789999999999999999999887 33345999999999999999999
Q ss_pred HHHC-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-----------
Q 000482 355 ATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------- 422 (1464)
Q Consensus 355 ~k~~-P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----------- 422 (1464)
.+++ ..+++.+|||.+..... .....||||+|||..+...
T Consensus 251 ~~~T~gslkv~~YhG~~R~~ni----------------------------kel~~YDvVLTty~vvEs~yRk~~~GfrrK 302 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNI----------------------------KELMNYDVVLTTYAVVESVYRKQDYGFRRK 302 (791)
T ss_pred HHhccCceEEEEEecccccCCH----------------------------HHhhcCcEEEEecHHHHHHHHhcccccccc
Confidence 9998 45799999998755331 1236899999999887431
Q ss_pred ------hcccCCCceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChH----
Q 000482 423 ------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE---- 492 (1464)
Q Consensus 423 ------~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~---- 492 (1464)
.+.|..++|..||+||||.||+..|...+++..+.+.+||.|||||+||.+.|||+|+.||..++|..+-
T Consensus 303 ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~c 382 (791)
T KOG1002|consen 303 NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKC 382 (791)
T ss_pred CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhc
Confidence 4567889999999999999999999999999999999999999999999999999999999988875220
Q ss_pred -----H--HH-------------HH---Hhh-----h-------hhHHHHHHHHHhhhhhhHHHHHhhHhh--cCCCcee
Q 000482 493 -----E--FQ-------------EE---FKD-----I-------NQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKE 535 (1464)
Q Consensus 493 -----~--F~-------------e~---f~~-----~-------~~~~~i~~L~~~L~p~~LRR~K~dv~~--~LPpk~e 535 (1464)
+ |. .. |.. + .....+...|.+|+.+|+||+|-.-.. .|||...
T Consensus 383 dc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv 462 (791)
T KOG1002|consen 383 DCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIV 462 (791)
T ss_pred cccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccce
Confidence 0 00 00 000 0 112445578899999999999854333 5899998
Q ss_pred eeecccCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHhCCcccccCCC-CC--------------
Q 000482 536 LILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVE-PD-------------- 594 (1464)
Q Consensus 536 ~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~------~~~~~~l~nil~~LRk~c~HP~L~~~~e-~~-------------- 594 (1464)
.+-.--++..++.+|+.+.......++.- -.+..+++.++.+|||+..||||+-... ..
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc 542 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLC 542 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeeccc
Confidence 88888899999999999987654444321 2344577888999999999999863210 00
Q ss_pred -------ccch---------------------------------------------hHHHH----------HHHhhhhHH
Q 000482 595 -------IEDT---------------------------------------------NESFK----------QLLESSGKL 612 (1464)
Q Consensus 595 -------~~~~---------------------------------------------~~~~~----------~li~~SgKl 612 (1464)
+... ...++ .-+++|.|+
T Consensus 543 ~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKI 622 (791)
T KOG1002|consen 543 HDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKI 622 (791)
T ss_pred CChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHH
Confidence 0000 00000 013468899
Q ss_pred HHHHHHHHHHHhcC--ceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccc
Q 000482 613 QLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 690 (1464)
Q Consensus 613 ~~L~kLL~~l~~~g--~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg 690 (1464)
.+|.+-|..+.++. -|.||||||+.|||+|.-.|...|++++.+.|+|++..|..+|+.|.++... .|||+|.+|||
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c-~vfLvSLkAGG 701 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDC-RVFLVSLKAGG 701 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCe-EEEEEEeccCc
Confidence 99999999988775 4899999999999999999999999999999999999999999999875544 56999999999
Q ss_pred cccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccc--cCCC
Q 000482 691 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNIN 768 (1464)
Q Consensus 691 ~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~~~~--~~~~ 768 (1464)
+.+||+.|++|+++||||||+...||++|+|||||.++|.|.||+.++|||++|++.+++|..+.+.-+|.... ..++
T Consensus 702 VALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt 781 (791)
T KOG1002|consen 702 VALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLT 781 (791)
T ss_pred eEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976522 2455
Q ss_pred HHHHHHH
Q 000482 769 QEELDDI 775 (1464)
Q Consensus 769 ~~el~~l 775 (1464)
.++|.-|
T Consensus 782 ~eDmqfL 788 (791)
T KOG1002|consen 782 EEDMQFL 788 (791)
T ss_pred HHHHHHH
Confidence 6665554
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.7e-63 Score=587.03 Aligned_cols=473 Identities=28% Similarity=0.508 Sum_probs=388.6
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhh-ccCCcEEEEecCCCchHHHHHHHHHHHHhC-----C----CCcEEEEEc
Q 000482 274 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSW-SKQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAP 343 (1464)
Q Consensus 274 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~-~~~~~~ILADemGLGKTiqaIa~l~~l~~~-----~----~~p~LIVvP 343 (1464)
+.+.+.|..+. ..|.|||..|+.||.-.- ..+.||||||+||||||+++|+++.+-... + ..++|||||
T Consensus 313 t~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 313 TDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred ccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 34455666665 689999999999995333 346799999999999999999999876431 1 127999999
Q ss_pred cccHHHHHHHHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh
Q 000482 344 LSTLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL 421 (1464)
Q Consensus 344 ~sll~qW~~E~~k~~--P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~ 421 (1464)
.|++.||..|+++-. --+.|.+|||... |.+ . .....+||||||||..+..
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~-------------------------~~~L~~YDvViTTY~lva~ 444 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK-REI-S-------------------------AKELRKYDVVITTYNLVAN 444 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-C-------------------------HHHHhhcceEEEeeecccc
Confidence 999999999998765 3478999999875 221 1 1123689999999998865
Q ss_pred ----------hhcccCCCceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCCh
Q 000482 422 ----------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL 491 (1464)
Q Consensus 422 ----------d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~ 491 (1464)
....|..|.|.+||+||||.+||..++.+.++..+.+..||+|||||+||++-|+|+|+.||....|++.
T Consensus 445 ~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 445 KPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred CCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 3456888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhh-----cCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHh---
Q 000482 492 EEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR--- 563 (1464)
Q Consensus 492 ~~F~e~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~-----~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~--- 563 (1464)
..|.++..... ...-.++.-+.++.||||+|...-. .||+++..++.++|+..+...|.-+++....++.+
T Consensus 525 ~~Wke~i~~~s-~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~ 603 (901)
T KOG4439|consen 525 KQWKENIDNMS-KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLL 603 (901)
T ss_pred HHHHHhccCcc-ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775322 2344566677889999999998765 79999999999999999999999887765544421
Q ss_pred -------cCC--------------------------------chhhHHHHHHHHHHHhCCcccccCCCCCcc--------
Q 000482 564 -------RGG--------------------------------AQISLINVVMELRKLCCHPYMLEGVEPDIE-------- 596 (1464)
Q Consensus 564 -------~~~--------------------------------~~~~l~nil~~LRk~c~HP~L~~~~e~~~~-------- 596 (1464)
.++ ....++.++++|||+|+||-+.....+...
T Consensus 604 ~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~ 683 (901)
T KOG4439|consen 604 QREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDD 683 (901)
T ss_pred hhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcch
Confidence 000 011357789999999999966543321000
Q ss_pred ---c-----------------------------hhHHHHHHHhhhhHHHHHHHHHHHH-HhcCceEEEEecchhhHHHHH
Q 000482 597 ---D-----------------------------TNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLE 643 (1464)
Q Consensus 597 ---~-----------------------------~~~~~~~li~~SgKl~~L~kLL~~l-~~~g~KVLIFSq~~~~LdiL~ 643 (1464)
. ....+......|.|+..+...+..+ .....|++|.||++.+|+++.
T Consensus 684 sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~ 763 (901)
T KOG4439|consen 684 SDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVR 763 (901)
T ss_pred hhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHH
Confidence 0 0001112234588999888888877 667889999999999999999
Q ss_pred HHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhc
Q 000482 644 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 723 (1464)
Q Consensus 644 ~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 723 (1464)
..|...|+.|..|+|.+...+|+.+|+.||....+..|+|||..|||+||||+.|+++|++|..|||+...||.+|++|+
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcccc---ccCCCHHHHHHH
Q 000482 724 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK---AQNINQEELDDI 775 (1464)
Q Consensus 724 GQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~~~---~~~~~~~el~~l 775 (1464)
||+|.|.||||+++||||++|...+.+|+.|+..|+.... ...++..+|..|
T Consensus 844 GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~L 898 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKL 898 (901)
T ss_pred cccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHH
Confidence 9999999999999999999999999999999999984332 334555665554
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.2e-63 Score=652.72 Aligned_cols=471 Identities=44% Similarity=0.729 Sum_probs=409.2
Q ss_pred CCCCcHHHHHHHHHHH-HhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEccccHHHHHHHHHHHCCC
Q 000482 285 GGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWAPQ 360 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~-~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~---~~p~LIVvP~sll~qW~~E~~k~~P~ 360 (1464)
..+|+|||++|++|+. ..+..+.+|||||+||+|||+|+|+++.+++... .+|+|||||.+++.||.+||.+|.|.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCcc
Confidence 4789999999999999 8889999999999999999999999999865542 35999999999999999999999999
Q ss_pred Ce-EEEEEcChhH----HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhcccCCCcee
Q 000482 361 MN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIKWQ 432 (1464)
Q Consensus 361 l~-vvvy~G~~~~----R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~---d~~~L~~i~w~ 432 (1464)
++ +.+++|.... +..+....... . ...|++++|||+.+.. +...+..+.|+
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~v~itty~~l~~~~~~~~~l~~~~~~ 474 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLH-------------------L--VIIFDVVITTYELLRRFLVDHGGLKKIEWD 474 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhc-------------------c--cceeeEEechHHHHHHhhhhHHHHhhceee
Confidence 99 9999998863 44443321100 0 2358999999999999 99999999999
Q ss_pred EEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHH-hhcCCCCC-ChHHHHHHHhhhh--------
Q 000482 433 CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN-------- 502 (1464)
Q Consensus 433 ~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~-fL~p~~f~-~~~~F~e~f~~~~-------- 502 (1464)
++|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|..++ +...|..+|....
T Consensus 475 ~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~ 554 (866)
T COG0553 475 RVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP 554 (866)
T ss_pred eeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999 99999999 5688999986432
Q ss_pred ---hHHHHHHHHHhhhhhhHHHHHhh--HhhcCCCceeeeecccCCHHHHHHHHHHHH---HHHHHHHhc--CC------
Q 000482 503 ---QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG------ 566 (1464)
Q Consensus 503 ---~~~~i~~L~~~L~p~~LRR~K~d--v~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~---~~~~~l~~~--~~------ 566 (1464)
....+..|+.+++||++||+|.+ +...||++.+.++.|.|+..|+.+|...+. ++...+... ..
T Consensus 555 ~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (866)
T COG0553 555 LEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRI 634 (866)
T ss_pred hhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 12344558899999999999999 899999999999999999999999999998 665555432 11
Q ss_pred --chhhHHHHHHHHHHHhCCcccccCC-CCCcc----------chhHHHHHHHhhh-hHHHHHHHHH-HHHHhcCc--eE
Q 000482 567 --AQISLINVVMELRKLCCHPYMLEGV-EPDIE----------DTNESFKQLLESS-GKLQLLDKMM-VKLKEQGH--RV 629 (1464)
Q Consensus 567 --~~~~l~nil~~LRk~c~HP~L~~~~-e~~~~----------~~~~~~~~li~~S-gKl~~L~kLL-~~l~~~g~--KV 629 (1464)
....+++.++.||++|+||.++... +.... ........++..+ +|+..+.++| ..+...|+ ||
T Consensus 635 ~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kv 714 (866)
T COG0553 635 GDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKV 714 (866)
T ss_pred cchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccE
Confidence 2667899999999999999998765 22111 1111123456778 9999999999 89999999 99
Q ss_pred EEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCC
Q 000482 630 LIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWN 709 (1464)
Q Consensus 630 LIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWN 709 (1464)
|||+||+.++++|+.+|...++.|++++|+++...|+.+|++|+++ ...+|||+|++|||.||||+.|++||+||++||
T Consensus 715 lifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wn 793 (866)
T COG0553 715 LIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWN 793 (866)
T ss_pred EEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccC
Confidence 9999999999999999999999999999999999999999999987 566789999999999999999999999999999
Q ss_pred hhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcc-c--cccCCCHHHHHHHHH
Q 000482 710 PHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIR 777 (1464)
Q Consensus 710 P~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~-~--~~~~~~~~el~~ll~ 777 (1464)
|+.+.||++|+|||||++.|.||+|++++|+||+|++++..|+.+...+++. . ....++.+++..++.
T Consensus 794 p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 794 PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999874 2 223456666666654
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=6.3e-55 Score=512.61 Aligned_cols=483 Identities=32% Similarity=0.510 Sum_probs=374.9
Q ss_pred CCCcHHHHHHHHHHH---------HhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLR---------FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 355 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~---------~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~sll~qW~~E~~ 355 (1464)
..|+|||+-|+.||. +.-+.|-|||||+.||||||+|+|+|+-.+++.. .+.+|+|+|-.+|.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 469999999999983 3335688999999999999999999999887754 459999999999999999999
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh------------
Q 000482 356 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------------ 423 (1464)
Q Consensus 356 k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~------------ 423 (1464)
.|.|.+ ..+.. ...+.++++.-++..+....+. .++ .+....-.|+++.|++++...
T Consensus 333 mWiP~y-----~sD~~--vrpR~F~vf~LnD~~KT~~~Ra-kvi---~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 333 MWIPKY-----FSDTG--VRPRSFEVFLLNDGVKTFDQRA-KVI---EQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred hhcCCC-----cccCC--CccceeEEEEecCchhhHHHHH-HHH---HHHhccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 999861 11111 1122222222211110000000 000 001122348888888874320
Q ss_pred --------------------------cccCCCceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHH
Q 000482 424 --------------------------ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 477 (1464)
Q Consensus 424 --------------------------~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~ 477 (1464)
..|-.-..++||+||+|||||....++.+|+.+++++|+.|||-|+|||+.|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 111122368999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCChHHHHHHHhhhh---------------hHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccC
Q 000482 478 MLMHFLDAGKFGSLEEFQEEFKDIN---------------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 542 (1464)
Q Consensus 478 sLL~fL~p~~f~~~~~F~e~f~~~~---------------~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~l 542 (1464)
.++.|+.|+.+++..+|...|...- .......||.+|..|+-||+...+.+.||.+.|+++.|.|
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRK 561 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeH
Confidence 9999999999999999999996421 0123457999999999999999888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC--------------------------------
Q 000482 543 SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG-------------------------------- 590 (1464)
Q Consensus 543 s~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~-------------------------------- 590 (1464)
|..|+++|..++......+...+....+-+....-..|+.|||-++..
T Consensus 562 s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~ 641 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNS 641 (1387)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCC
Confidence 999999999998655544443333222333333344555588853210
Q ss_pred --CCC--------------------------------CccchhHH--------HHHHHhhhhHHHHHHHHHHHHHhcCce
Q 000482 591 --VEP--------------------------------DIEDTNES--------FKQLLESSGKLQLLDKMMVKLKEQGHR 628 (1464)
Q Consensus 591 --~e~--------------------------------~~~~~~~~--------~~~li~~SgKl~~L~kLL~~l~~~g~K 628 (1464)
..+ ++....+. ...++..+.|+.++.+++..-..-|.|
T Consensus 642 ~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~k 721 (1387)
T KOG1016|consen 642 IPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEK 721 (1387)
T ss_pred CCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCce
Confidence 000 00000000 112355678888888888888888999
Q ss_pred EEEEecchhhHHHHHHHHhhcC------------------CeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccc
Q 000482 629 VLIYSQFQHMLDLLEDYLTFKK------------------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 690 (1464)
Q Consensus 629 VLIFSq~~~~LdiL~~~L~~~g------------------~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg 690 (1464)
+|||||....||.|+.+|..+. ..|.|++|.++..+|+++|++||.+.+....|||||+||.
T Consensus 722 il~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~ 801 (1387)
T KOG1016|consen 722 ILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGS 801 (1387)
T ss_pred EEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcccc
Confidence 9999999999999999997643 3589999999999999999999998888888999999999
Q ss_pred cccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcccc-ccCCCH
Q 000482 691 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-AQNINQ 769 (1464)
Q Consensus 691 ~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~~~-~~~~~~ 769 (1464)
.||||-+|+.+||||.-|||..+.||..|++|.||+|+++|||||+.+|+|.+|+.++-.|.++.+.|++... ..+++.
T Consensus 802 lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~ 881 (1387)
T KOG1016|consen 802 LGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQ 881 (1387)
T ss_pred ccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997764 457899
Q ss_pred HHHHHHHHhc
Q 000482 770 EELDDIIRYG 779 (1464)
Q Consensus 770 ~el~~ll~~g 779 (1464)
.|++.|+.+.
T Consensus 882 Ke~enLl~~~ 891 (1387)
T KOG1016|consen 882 KELENLLMYD 891 (1387)
T ss_pred HHHHHHhhhh
Confidence 9999998764
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-53 Score=487.99 Aligned_cols=409 Identities=28% Similarity=0.438 Sum_probs=327.1
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeE-EE
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV-VM 365 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~v-vv 365 (1464)
.|.|||++||+|. ...|++++||||||||||+|||+++.+++.++ |.|||||.++...|..++.+|+|...- .+
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 6999999999875 47899999999999999999999999988775 999999999999999999999987654 22
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccCCc
Q 000482 366 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 445 (1464)
Q Consensus 366 y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~ 445 (1464)
..+..+. .+. -....-|.|+||+++......|..-+|.+||+||+|.||+.
T Consensus 273 v~~~~D~----------~~~-------------------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDP----------LPD-------------------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCC----------ccc-------------------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 2222211 000 11234589999999999999999999999999999999999
Q ss_pred chHHHHHHHhc--ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------hHHHHHHHHHhh
Q 000482 446 DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 514 (1464)
Q Consensus 446 ~Sk~~~al~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~---------~~~~i~~L~~~L 514 (1464)
.++..+++..+ ..+|.+||||||.-..+.|||.++..+++..|+++.+|...|.+.. .-.+..+|+-+|
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 99998888777 4789999999999999999999999999999999999999997543 234677788777
Q ss_pred h-hhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000482 515 A-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 593 (1464)
Q Consensus 515 ~-p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~ 593 (1464)
. ..|+||+|.+|+++||||...++. .....+-..-+.+...... .... +. |+-.+.| +.
T Consensus 404 ~k~lMIRRlK~dvL~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~------~t~~---~~-~e~~~~~----l~----- 463 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPKRREVVY-VSGGRIDARMDDLVKAAAD------YTKV---NS-MERKHES----LL----- 463 (689)
T ss_pred HHHHHHHHHHHHHHhhCCccceEEEE-EcCCccchHHHHHHHHhhh------cchh---hh-hhhhhHH----HH-----
Confidence 5 469999999999999999555444 4444444434444332221 0000 00 0001100 00
Q ss_pred CccchhHHHHHHHhhhhHHHHHHHHHHH----HHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHH
Q 000482 594 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 669 (1464)
Q Consensus 594 ~~~~~~~~~~~li~~SgKl~~L~kLL~~----l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~I 669 (1464)
+.--...-.|+..+.+.|.. ..+.+.|+|||+.+..+||-|+.++..+++.++||||++++.+|+.++
T Consensus 464 --------l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 464 --------LFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred --------HHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 00001123456666555555 445688999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 000482 670 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 749 (1464)
Q Consensus 670 d~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~ 749 (1464)
+.|+.... ..|-+||..|+|+||+|++|+.|+|.+..|||...+||.+|+||+||+..|.||+|++++|+|+.+|....
T Consensus 536 qsFQ~see-v~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSEE-VRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhccccc-eEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 99987444 44578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000482 750 KKMVLEHLV 758 (1464)
Q Consensus 750 ~K~~L~~~V 758 (1464)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 998754443
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=6e-52 Score=533.66 Aligned_cols=416 Identities=20% Similarity=0.285 Sum_probs=321.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~sll~qW~~E~~k~~P~l~vv 364 (1464)
..|.|||+..+.++... ...++|||||||||||++|++++..+...+ .+|+|||||.+++.||..|+.+|+ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 46999999998776443 467899999999999999999999887654 469999999999999999998887 56777
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---cccCCCceeEEEeccccc
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 441 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~---~~L~~i~w~~VIvDEAHr 441 (1464)
+|.+...... . .. .......++++|+||+.+.++. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~-------~-~~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEA-------Q-HD----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhh-------c-cc----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 7765432210 0 00 0012235789999999998754 446677999999999999
Q ss_pred cCC---cchHHHHHHHhc--ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh---hh-----------
Q 000482 442 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---IN----------- 502 (1464)
Q Consensus 442 lKN---~~Sk~~~al~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~---~~----------- 502 (1464)
++| ..|..++.+..+ .++++|||||||+||+..|+|++|+||+|+.|+++..|.+.... +.
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888877 46799999999999999999999999999999999999765432 10
Q ss_pred -hHHHHHHHHHhh------------------------------------hhhhHHHHHhhHhhcCCCceeeeecccCCHH
Q 000482 503 -QEEQISRLHRML------------------------------------APHLLRRVKKDVMKELPPKKELILRVELSSK 545 (1464)
Q Consensus 503 -~~~~i~~L~~~L------------------------------------~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~ 545 (1464)
.......|..+| .++|+|+++++|. .+|++..+.+.+++.+.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 011111221111 2567888888876 68999999999998764
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc-cccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHh
Q 000482 546 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY-MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 624 (1464)
Q Consensus 546 Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~-L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~ 624 (1464)
|........ ...++++ .+|. ++.... ........++|+..|.++|..+.
T Consensus 443 ----y~~~~~~~~----------------~~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~~- 492 (956)
T PRK04914 443 ----YQTAIKVSL----------------EARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSHR- 492 (956)
T ss_pred ----HHHHHHHhH----------------HHHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhcC-
Confidence 332221100 0111221 1221 000000 00112335679999999988753
Q ss_pred cCceEEEEecchhhHHHHHHHH-hhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE
Q 000482 625 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 703 (1464)
Q Consensus 625 ~g~KVLIFSq~~~~LdiL~~~L-~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi 703 (1464)
+.||||||++..+++.|.+.| ...|+++..|+|+++..+|+++++.|++++.+ ..+||+|.+||+|+||+.|++||+
T Consensus 493 -~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~-~~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 493 -SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG-AQVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred -CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC-ccEEEechhhccCCCcccccEEEE
Confidence 789999999999999999999 56799999999999999999999999875433 247899999999999999999999
Q ss_pred ecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcc
Q 000482 704 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR 761 (1464)
Q Consensus 704 ~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L~~~Vig~ 761 (1464)
||+||||..++||+||+||+||++.|.||.+++++|++++|++...+|+.+...+++.
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 9999999999999999999999999999999999999999999999999887777654
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6e-47 Score=472.07 Aligned_cols=437 Identities=30% Similarity=0.496 Sum_probs=356.0
Q ss_pred HHHHHHHHHHHH-hhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC--------CcEEEEEccccHHHHHHHHHHHCC-
Q 000482 290 PYQLEGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--------SPHLVVAPLSTLRNWEREFATWAP- 359 (1464)
Q Consensus 290 pyQlegvnwL~~-~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~--------~p~LIVvP~sll~qW~~E~~k~~P- 359 (1464)
.+|..+-.|+.. .+..-.|||+||+||+|||+++|+++........ +-.|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 566666555532 3345678999999999999999999887644322 378999999999999999966663
Q ss_pred -CCeEEEEEc-ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEec
Q 000482 360 -QMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 437 (1464)
Q Consensus 360 -~l~vvvy~G-~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvD 437 (1464)
.+.+.+|+| .++. ....+++||||||.++.. ..+..+.|-+||+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 477888888 2111 123578899999999975 66777999999999
Q ss_pred cccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---h-HHHHHHHHHh
Q 000482 438 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---Q-EEQISRLHRM 513 (1464)
Q Consensus 438 EAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~---~-~~~i~~L~~~ 513 (1464)
|||.++|.+++.++++..+.+.+||.|||||+||++.|||+++.|+.-+.+.....|...+.... . ......++.+
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888877765422 2 4667888999
Q ss_pred hhhhhHHHHHhhH-----hhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHh
Q 000482 514 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 582 (1464)
Q Consensus 514 L~p~~LRR~K~dv-----~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~------~~~~~~l~nil~~LRk~c 582 (1464)
|..+++||+|..- ...|||+...++.+.++..++.+|+.+........... ......++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999998632 23799999999999999999999999987665544321 223456777788999999
Q ss_pred CCcccccCCCCCcc----ch-----------------------------------hH---------------------HH
Q 000482 583 CHPYMLEGVEPDIE----DT-----------------------------------NE---------------------SF 602 (1464)
Q Consensus 583 ~HP~L~~~~e~~~~----~~-----------------------------------~~---------------------~~ 602 (1464)
+||+++-....... .. .+ ..
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987632110000 00 00 00
Q ss_pred HHHHh-------------hhhHHHHHHHHHHHHHhcCc-eEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHH
Q 000482 603 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 668 (1464)
Q Consensus 603 ~~li~-------------~SgKl~~L~kLL~~l~~~g~-KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~ 668 (1464)
..++. .|.|+..+.++|........ +++||||++.++++++-.|...++.+.+++|.++...|.+.
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 11111 26677777777775444444 99999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000482 669 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 748 (1464)
Q Consensus 669 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a 748 (1464)
+..|+. +....+.|+|.+|||.||||+.|++||++|++|||....||+.||||+||+++|.|+||++++|+||+|+.++
T Consensus 582 ~~~~~~-~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPC-DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hccccc-CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 999994 4455568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 000482 749 KKKMVLEHLVVG 760 (1464)
Q Consensus 749 ~~K~~L~~~Vig 760 (1464)
++|..+.....|
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999998777654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=4.1e-40 Score=382.46 Aligned_cols=272 Identities=42% Similarity=0.704 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHhh---------ccCCcEEEEecCCCchHHHHHHHHHHHHhCCC----CcEEEEEccccHHHHHHHHHHH
Q 000482 291 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 291 yQlegvnwL~~~~---------~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~----~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
||++||+||+..+ ...+||||||+||+|||+++++++.++..... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 88899999999999999999999998876543 2699999999999999999999
Q ss_pred C-C-CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHH-----hhhcccCCCc
Q 000482 358 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 430 (1464)
Q Consensus 358 ~-P-~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~-----~d~~~L~~i~ 430 (1464)
+ | .+++++|.|....+.. .......++++|+||+.+. .....+..++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6888888887722211 0112357899999999999 6677788899
Q ss_pred eeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh---hhhHHHH
Q 000482 431 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 507 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~---~~~~~~i 507 (1464)
|++|||||+|++||..+..++++..+.+.++|+|||||++|++.|||++++||.|+.+.+...|.+.|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998843 3456788
Q ss_pred HHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHhC
Q 000482 508 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 583 (1464)
Q Consensus 508 ~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~----~~~~~l~nil~~LRk~c~ 583 (1464)
..|..+++++++||++.++...+|+..+.++.|+||+.|+..|+.+.......+.... .....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999889999999999999999999999998887666554433 334578899999999999
Q ss_pred Ccccc
Q 000482 584 HPYML 588 (1464)
Q Consensus 584 HP~L~ 588 (1464)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-36 Score=379.09 Aligned_cols=341 Identities=16% Similarity=0.265 Sum_probs=254.7
Q ss_pred CCCCcHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcccc-HHHHHHHHHHHC--C
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWA--P 359 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~k~~--P 359 (1464)
..+|||||.++++++. .++ ++|||.++||+|||+++++++..+ .+++|||||.+. +.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4689999999998873 333 589999999999999999988765 258999999765 789999999997 3
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------hcccCCC
Q 000482 360 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 429 (1464)
Q Consensus 360 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----------~~~L~~i 429 (1464)
...+..|+|....+ .....+|+|+||+++... ...|...
T Consensus 326 ~~~I~~~tg~~k~~-------------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKER-------------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCcccc-------------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 45666677653221 012367999999998643 1345556
Q ss_pred ceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhh-cCCCCCChHHHHHHHhhhhhHHHHH
Q 000482 430 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 508 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL-~p~~f~~~~~F~e~f~~~~~~~~i~ 508 (1464)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++ +.+..+.++ .|..|.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye------------------- 431 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------------------- 431 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeee-------------------
Confidence 899999999999964 34445677788999999999999876 233334433 333321
Q ss_pred HHHHhhhhhhHHHHHhhHh--hcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000482 509 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 586 (1464)
Q Consensus 509 ~L~~~L~p~~LRR~K~dv~--~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~ 586 (1464)
..-.++. ..|.+.....|+|+|++.....|. ... .. .+...
T Consensus 432 ------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl---~~~-------~~-----------~k~~l---- 474 (732)
T TIGR00603 432 ------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYL---REN-------SR-----------KRMLL---- 474 (732)
T ss_pred ------------cCHHHHHhCCccccceEEEEEecCCHHHHHHHH---Hhc-------ch-----------hhhHH----
Confidence 1111111 357777888899999986544332 110 00 00000
Q ss_pred cccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHH
Q 000482 587 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 666 (1464)
Q Consensus 587 L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq 666 (1464)
...+..|+..+..++......|+|+||||+++..++.+...|. . ..|+|.++..+|.
T Consensus 475 ------------------~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 475 ------------------YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---K--PFIYGPTSQQERM 531 (732)
T ss_pred ------------------hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---C--ceEECCCCHHHHH
Confidence 0124468899999998876789999999999998888877773 3 4589999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhcHHHHHHhhhhcCCCCc-----EEEEEEEeCCCH
Q 000482 667 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 740 (1464)
Q Consensus 667 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~-----V~VyrLvt~~Tv 740 (1464)
+++++|+.++ .+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. ..+|.|++++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999998532 334688889999999999999999999986 99999999999999987653 789999999999
Q ss_pred HHHHHHHH
Q 000482 741 EERMMQMT 748 (1464)
Q Consensus 741 EE~I~~~a 748 (1464)
|+..-.+-
T Consensus 610 E~~~s~~R 617 (732)
T TIGR00603 610 EMYYSTKR 617 (732)
T ss_pred HHHHHHHH
Confidence 98875443
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.2e-32 Score=358.04 Aligned_cols=429 Identities=17% Similarity=0.208 Sum_probs=284.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC--CCe
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P--~l~ 362 (1464)
.++|+||.+.+..+. . +++|++++||+|||++++.++..++....+++|||||. .++.||..+|.+++. ..+
T Consensus 14 ~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 2 38999999999999999988887775555699999997 778999999998873 347
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeEEEecccc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIvDEAH 440 (1464)
+++++|......... + ....+|+|+|++.+..+. ..+..-.|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~---~------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAE---L------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHH---H------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 888888654322111 1 124679999999987653 23344478999999999
Q ss_pred ccCCcchHHHHHHHhc---ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHH----HHHHHh-------hhhhHHH
Q 000482 441 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE----FQEEFK-------DINQEEQ 506 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l---~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~----F~e~f~-------~~~~~~~ 506 (1464)
++.+..+..+.+-... ...++++|||||.++ ...+..+++-|....+..+.. ....+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987655443332222 244589999999775 566777776665333221111 111111 1122355
Q ss_pred HHHHHHhhhhhhHHHHHhhHhhc-CCCceeeeecccCCHHHHHHHHHHHHHHHHHHH---------h--------cCCch
Q 000482 507 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILT---------R--------RGGAQ 568 (1464)
Q Consensus 507 i~~L~~~L~p~~LRR~K~dv~~~-LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~---------~--------~~~~~ 568 (1464)
+..++..|..++.++.+...... +++....+....+...++.++..+......... . .....
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 67788888888888777644322 222222122222333333333322110000000 0 00011
Q ss_pred hhHHHHHHHHHHHhCCcccccCCCCCccch------hHHHHHHHhhhhHHHHHHHHHHHHH--hcCceEEEEecchhhHH
Q 000482 569 ISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLD 640 (1464)
Q Consensus 569 ~~l~nil~~LRk~c~HP~L~~~~e~~~~~~------~~~~~~li~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~Ld 640 (1464)
..+...+..++....++-..... ..+... ......+...++|+..|.++|.... ..+.|+||||++..+++
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKAS-KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHH-HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 12222222222222111000000 000000 0011222345789999999999876 46899999999999999
Q ss_pred HHHHHHhhcCCeEEEEEcC--------CCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhc
Q 000482 641 LLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 712 (1464)
Q Consensus 641 iL~~~L~~~g~~~~ridGs--------~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~ 712 (1464)
.|.++|...|+++.+++|. ++..+|+.++++|+.+. +.+|++|.++++|+|++.+++||+||++|||..
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE---FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999999999999997 88899999999998754 448999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000482 713 DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 754 (1464)
Q Consensus 713 d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L 754 (1464)
++|+.||++|.|+ +.||.|++++|+||.++....+|...
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~ 495 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKK 495 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHH
Confidence 9998888888765 67899999999999998776655443
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=8.8e-30 Score=318.96 Aligned_cols=256 Identities=25% Similarity=0.451 Sum_probs=198.1
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHH------------hC-----CCCcEEEEEccccHHHHHHHHHHHCCCC-eEEE
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLF------------GE-----RISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 365 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~------------~~-----~~~p~LIVvP~sll~qW~~E~~k~~P~l-~vvv 365 (1464)
..|..+++||+||+|||...++....-. .. ..|.+|||||.+++.||..||.++++.. +|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 4456789999999999998876654321 11 1357999999999999999999999877 9999
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh----------------------
Q 000482 366 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---------------------- 423 (1464)
Q Consensus 366 y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~---------------------- 423 (1464)
|.|-...-- . .......||||+|||+.++.+.
T Consensus 452 Y~Girk~~~-------~-------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFW-------L-------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhcc-------c-------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 998754311 0 0123578999999999997652
Q ss_pred cccCCCceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh-
Q 000482 424 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN- 502 (1464)
Q Consensus 424 ~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~- 502 (1464)
+.|-.+.|-+||||||+-+....|...+.+..+.+.++|.+||||+|+ +.+|+.||.||.-.+|.....|.+.....-
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 234446799999999999999999999999999999999999999999 999999999999999999988877654321
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhHhh--cCCCceeeeecccCCHHHHHHHHHHHH----HHHHH---HHhc-----CC--
Q 000482 503 QEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAILT----RNYQI---LTRR-----GG-- 566 (1464)
Q Consensus 503 ~~~~i~~L~~~L~p~~LRR~K~dv~~--~LPpk~e~iv~v~ls~~Qk~~Y~~il~----~~~~~---l~~~-----~~-- 566 (1464)
.......+++++...+-|+.|.+|.. .+||-.+.+....+++.+-.+|+.... ..... +.+. .+
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 11344567888899999999998876 579999999999999988877765432 22211 1110 10
Q ss_pred -----chhhHHHHHHHHHHHhCCcc
Q 000482 567 -----AQISLINVVMELRKLCCHPY 586 (1464)
Q Consensus 567 -----~~~~l~nil~~LRk~c~HP~ 586 (1464)
....+++-+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 12357788999999999984
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.8e-27 Score=277.90 Aligned_cols=419 Identities=17% Similarity=0.204 Sum_probs=269.4
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC--CCCe
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~--P~l~ 362 (1464)
.+.|.||..-+.-. -.+|++++.++|||||+.|+.++.+.+....+.+|+++|+ .++.|-.+-|.+.+ |...
T Consensus 14 ie~R~YQ~~i~a~a-----l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKA-----LFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHH-----hhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 46899999876543 2349999999999999999999987766655699999995 77888888888887 6678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeEEEecccc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIvDEAH 440 (1464)
++.++|.-....... .+.+..|+++|++++..|. ..+..-++.+||+||||
T Consensus 89 i~~ltGev~p~~R~~---------------------------~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEEREE---------------------------LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHHHH---------------------------HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 889998754322111 1245679999999998874 34555578999999999
Q ss_pred ccCCcchHHHHH--HHhcccc-cEEeecccccCCCHHHHHHHHHhhcCCCCC----ChHHHHHHHh-------hhhhHHH
Q 000482 441 RLKNKDSKLFSS--LKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEEFK-------DINQEEQ 506 (1464)
Q Consensus 441 rlKN~~Sk~~~a--l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~----~~~~F~e~f~-------~~~~~~~ 506 (1464)
|.-++.+-.+-+ ......+ +.|+||||| -++.+.+...+.-|..+... ...+-..... .+.-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 998776654433 3333333 678999999 45566666666666544321 1111111111 1122233
Q ss_pred HHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCC-HHHHHHHHHHHHHHHHHHHhcC--------------------
Q 000482 507 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELS-SKQKEYYKAILTRNYQILTRRG-------------------- 565 (1464)
Q Consensus 507 i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls-~~Qk~~Y~~il~~~~~~l~~~~-------------------- 565 (1464)
+..+.++|+..+-.|++.--... +...-+ -.++++.... . .........
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g--------~~~~~~~~~~kdl~~~~-~-~~~~~a~~~~~~~~~~l~~~a~~~kl~~a 290 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELG--------VIESSSPVSKKDLLELR-Q-IRLIMAKNEDSDKFRLLSVLAEAIKLAHA 290 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--------ceeccCcccHhHHHHHH-H-HHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333211111 111111 1122222222 0 000000000
Q ss_pred ------CchhhHHHHHHHHHHHhCC--cccccCCCCCccchhHHHHHHH------hhhhHHHHHHHHHHHHH--hcCceE
Q 000482 566 ------GAQISLINVVMELRKLCCH--PYMLEGVEPDIEDTNESFKQLL------ESSGKLQLLDKMMVKLK--EQGHRV 629 (1464)
Q Consensus 566 ------~~~~~l~nil~~LRk~c~H--P~L~~~~e~~~~~~~~~~~~li------~~SgKl~~L~kLL~~l~--~~g~KV 629 (1464)
.+...+.+-+.+|..-+.. -.-....-.+ .....++..++ -..+||..+.+++.+.. ..+.||
T Consensus 291 ~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d-~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~Rv 369 (542)
T COG1111 291 LELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD-PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV 369 (542)
T ss_pred HHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC-hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceE
Confidence 0001111111122111111 0000000000 00011111111 13679999999999877 557899
Q ss_pred EEEecchhhHHHHHHHHhhcCCeEE-EEEc--------CCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCE
Q 000482 630 LIYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT 700 (1464)
Q Consensus 630 LIFSq~~~~LdiL~~~L~~~g~~~~-ridG--------s~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~ 700 (1464)
|||++|..+++.|.++|...|.... ++-| +|++.+...+|+.|.++.-+ +|++|..|.+|||++.+|.
T Consensus 370 IVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 370 IVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred EEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccE
Confidence 9999999999999999999988876 6666 47889999999999875554 8999999999999999999
Q ss_pred EEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000482 701 VIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 754 (1464)
Q Consensus 701 VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~L 754 (1464)
||+||+.=+|...+||+||.+| ++.-.||-|+++||-||.-+..+.+|..-
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~ 497 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQK 497 (542)
T ss_pred EEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHH
Confidence 9999999999999999999988 47788999999999999999988887643
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=6.3e-28 Score=295.07 Aligned_cols=362 Identities=20% Similarity=0.282 Sum_probs=268.6
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC-e
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 362 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l-~ 362 (1464)
..+|||||.++++-+...+...+.+++...+|.|||+.++.++..+.. ++|||||. .++.||.+.+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 367999999999666555555889999999999999999999988754 49999995 77899998888887432 2
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCcccccccccccc-ccEEEecHHHHHhhh--cccCCCceeEEEeccc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 439 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~k-fdVvItSYe~l~~d~--~~L~~i~w~~VIvDEA 439 (1464)
+-.|.|.... .. ..|.|+||+++.+.. ..+..-.|++||+|||
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3333332211 12 469999999998863 3333337999999999
Q ss_pred cccCCcchHHHHHHHhccccc-EEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 000482 440 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 518 (1464)
Q Consensus 440 HrlKN~~Sk~~~al~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~ 518 (1464)
|++....... .+..+...+ +|+|||||...+...+..+..++ .|..
T Consensus 156 Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~-------------------------------g~~v 202 (442)
T COG1061 156 HHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFDLI-------------------------------GPIV 202 (442)
T ss_pred ccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchhHHHHhc-------------------------------CCeE
Confidence 9987655443 333344455 99999999644422333222222 2222
Q ss_pred HHHHHhhH-h-hcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000482 519 LRRVKKDV-M-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 596 (1464)
Q Consensus 519 LRR~K~dv-~-~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~ 596 (1464)
......+. . ..|.|.....+.+.++......|.....+....+..... . .
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~ 254 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------L----------------------R 254 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------h----------------------h
Confidence 22222222 2 368899999999999999999888776655444332221 0 0
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccC
Q 000482 597 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 676 (1464)
Q Consensus 597 ~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~ 676 (1464)
..............|+..+..++.... ++.+++||+......+.|...|...|+ ...++|.++..+|..+++.|..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112333446678888888888877 899999999999999999999998888 999999999999999999998755
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhc-CCCCc--EEEEEEEeCCCHHHHHHHHHHH
Q 000482 677 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-GQTNK--VMIFRLITRGSIEERMMQMTKK 750 (1464)
Q Consensus 677 s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi-GQ~k~--V~VyrLvt~~TvEE~I~~~a~~ 750 (1464)
+.+|++++.+++|+|++.|+++|+..+.-++..++|++||+.|. ..++. +..|-++...+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 55899999999999999999999999999999999999999994 44444 7778888888888877665543
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=5e-27 Score=292.23 Aligned_cols=339 Identities=14% Similarity=0.164 Sum_probs=229.7
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC--CCC
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 361 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~--P~l 361 (1464)
...|||||.+++.-+ ..+.++||...||+|||++++.++..+...+..++|||||. .++.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~----l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEG----LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHH----HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 368999999998654 24677899999999999998777666555555599999996 88899999999976 322
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccc
Q 000482 362 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 441 (1464)
Q Consensus 362 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHr 441 (1464)
.+..+.|... .....+|+|+|++.+.+....+ --.|++|||||||+
T Consensus 188 ~~~~i~~g~~---------------------------------~~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~ 233 (501)
T PHA02558 188 AMHKIYSGTA---------------------------------KDTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHL 233 (501)
T ss_pred ceeEEecCcc---------------------------------cCCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhc
Confidence 2322222110 0124689999999987543221 12678999999999
Q ss_pred cCCcchHHHHHHHhc-ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhHH
Q 000482 442 LKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 520 (1464)
Q Consensus 442 lKN~~Sk~~~al~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~LR 520 (1464)
+... .+...+..+ .+.++++|||||-..... .+.+..++.|-... . ...++ +
T Consensus 234 ~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~-----------v----~~~~l---i------ 286 (501)
T PHA02558 234 FTGK--SLTSIITKLDNCKFKFGLTGSLRDGKAN-ILQYVGLFGDIFKP-----------V----TTSQL---M------ 286 (501)
T ss_pred ccch--hHHHHHHhhhccceEEEEeccCCCcccc-HHHHHHhhCCceEE-----------e----cHHHH---H------
Confidence 9753 344555666 467899999999533211 11111222211100 0 00000 0
Q ss_pred HHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccchhH
Q 000482 521 RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 600 (1464)
Q Consensus 521 R~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~~~ 600 (1464)
+ ...+.+.....+.+..++.....+ . .. ....
T Consensus 287 ---~--~g~l~~~~~~~v~~~~~~~~~~~~-----------~--~~------------------------------~~~~ 318 (501)
T PHA02558 287 ---E--EGQVTDLKINSIFLRYPDEDRVKL-----------K--GE------------------------------DYQE 318 (501)
T ss_pred ---h--CCCcCCceEEEEeccCCHHHhhhh-----------c--cc------------------------------chHH
Confidence 0 012222233334444332211000 0 00 0001
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCce
Q 000482 601 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 680 (1464)
Q Consensus 601 ~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~ 680 (1464)
.+..+.....+..++.+++..+...|+++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+. ..
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~ 396 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GI 396 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--Ce
Confidence 1122333445667777777777778999999999999999999999999999999999999999999999997532 23
Q ss_pred EEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC-cEEEEEEEeCC
Q 000482 681 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRG 738 (1464)
Q Consensus 681 vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k-~V~VyrLvt~~ 738 (1464)
++|.|++..|+|+|++.+|+||+++|.-+...++|++||++|.+..| .+.||.|+-.-
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 34444599999999999999999999999999999999999998766 68999998643
No 27
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=99.95 E-value=4.2e-28 Score=241.91 Aligned_cols=133 Identities=56% Similarity=0.955 Sum_probs=123.0
Q ss_pred CCCCCCccccccCCCCCCCCCccccccchhhcCCChHHHHHHHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHHH
Q 000482 938 QPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLT 1017 (1464)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~Lte~e~~~l~v~GF~~w~Rr~Fv~a~~kyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~~ 1017 (1464)
...+++++++.| ++.+++||++++++++.|+||+..||+.|++++||||+++++|+|+.++|.+||.+||++|+.+||.
T Consensus 9 ~~~r~~~rkk~r-~~~~~pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~ 87 (145)
T PF06461_consen 9 ETGRRPSRKKRR-DNKDPPPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMR 87 (145)
T ss_pred cccccccccccc-cCCCCCCccccCCCceEEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHH
Confidence 345666666665 5556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCC-CCCccCCCCcCccchhHHHHHHHHHHHHHHHHHhccCCCCCCCccc
Q 000482 1018 HITEDITD-SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTD 1071 (1464)
Q Consensus 1018 ~~~E~i~d-~~~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~ 1071 (1464)
|+||+++| +++|+|||||+++++++||+||++|+||++||++|+.+|..+.||.
T Consensus 88 HL~E~~~d~s~tfsDGVPkEgl~~q~VL~RIgvm~LIr~KV~e~e~~ng~~s~p~ 142 (145)
T PF06461_consen 88 HLCEPGTDNSDTFSDGVPKEGLRRQDVLVRIGVMSLIRKKVQEFEHINGTWSFPE 142 (145)
T ss_pred HhcCCCcCCCCccCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCccCch
Confidence 99999988 9999999999999999999999999999999999999998888764
No 28
>PTZ00110 helicase; Provisional
Probab=99.91 E-value=2.2e-22 Score=252.57 Aligned_cols=319 Identities=17% Similarity=0.255 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhC-----CCC-cEEEEEcc-ccHHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATW 357 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~-----~~~-p~LIVvP~-sll~qW~~E~~k~ 357 (1464)
.++.|+|..++..+ ..+.++|+..++|+|||++.+ ..+..+... ..+ .+|||||. .+..|+..++.++
T Consensus 151 ~~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 36899999998665 578899999999999999864 344444332 123 47999996 6678899999998
Q ss_pred CC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCceeE
Q 000482 358 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQC 433 (1464)
Q Consensus 358 ~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~ 433 (1464)
.. .+++.+.+|....+...... ....+|+|+|++.+..... .+.--...+
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 74 35666666655443332221 1246899999987754321 122234678
Q ss_pred EEeccccccCCcc--hHHHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000482 434 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 510 (1464)
Q Consensus 434 VIvDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 510 (1464)
|||||||++.... ..+.+.+..+.. ...+++|||.- .++-.+..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~----------------------------- 327 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR----------------------------- 327 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH-----------------------------
Confidence 9999999987643 233444444543 34688999941 11111000
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 590 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~ 590 (1464)
.++ ...| ....+-.+.++. . . .+++ .+.
T Consensus 328 -----~l~---------~~~~-v~i~vg~~~l~~--------------------~-~---------~i~q----~~~--- 355 (545)
T PTZ00110 328 -----DLC---------KEEP-VHVNVGSLDLTA--------------------C-H---------NIKQ----EVF--- 355 (545)
T ss_pred -----HHh---------ccCC-EEEEECCCcccc--------------------C-C---------CeeE----EEE---
Confidence 000 0000 000000000000 0 0 0000 000
Q ss_pred CCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHH
Q 000482 591 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 670 (1464)
Q Consensus 591 ~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id 670 (1464)
.+....|...|..+|..+...+.++||||+....++.|...|...|++...++|.++..+|..+++
T Consensus 356 --------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 356 --------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred --------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH
Confidence 011233566677777777667889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 671 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 671 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
.|..+.. .+||+|.++++|||++.+++||+||+++++..++|++||++|.|.+-.+ |.|++.+
T Consensus 422 ~F~~G~~---~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 422 EFKTGKS---PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred HHhcCCC---cEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 9987444 3899999999999999999999999999999999999999999976544 5556654
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.90 E-value=4.4e-22 Score=245.79 Aligned_cols=310 Identities=15% Similarity=0.230 Sum_probs=205.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH-HHHHhCC-----C--CcEEEEEcc-ccHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----I--SPHLVVAPL-STLRNWEREFAT 356 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~l~~~~-----~--~p~LIVvP~-sll~qW~~E~~k 356 (1464)
..+.|+|.+++.-+ ..+.++|+...+|+|||+..+..+ ..+.... . ..+|||||. .+..||.+++..
T Consensus 22 ~~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 36889999998766 467899999999999999865544 3333221 1 158999996 667899999988
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcee
Q 000482 357 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 432 (1464)
Q Consensus 357 ~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~ 432 (1464)
+.. .+.++.++|.......+... ...++|+|+|++.+.... ..+..-..+
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 763 45666677665433222110 135789999999885432 222233567
Q ss_pred EEEeccccccCCcc--hHHHHHHHhcccc-cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000482 433 CMIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 509 (1464)
Q Consensus 433 ~VIvDEAHrlKN~~--Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 509 (1464)
+|||||||++-... ..+...+..+... ..+++|||+-. .+.++. ..+..+
T Consensus 152 ~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~---~~~~~~----------------------- 204 (456)
T PRK10590 152 ILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALA---EKLLHN----------------------- 204 (456)
T ss_pred EEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHH---HHHcCC-----------------------
Confidence 99999999986543 2333444445433 46899999611 111111 000000
Q ss_pred HHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000482 510 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 589 (1464)
Q Consensus 510 L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~ 589 (1464)
|..+.-..... ..+........
T Consensus 205 ------~~~i~~~~~~~--~~~~i~~~~~~-------------------------------------------------- 226 (456)
T PRK10590 205 ------PLEIEVARRNT--ASEQVTQHVHF-------------------------------------------------- 226 (456)
T ss_pred ------CeEEEEecccc--cccceeEEEEE--------------------------------------------------
Confidence 00000000000 00000000000
Q ss_pred CCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHH
Q 000482 590 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 669 (1464)
Q Consensus 590 ~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~I 669 (1464)
+....|..+|..++.. ....++||||......+.|...|...|+....++|.++..+|..++
T Consensus 227 ----------------~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 227 ----------------VDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred ----------------cCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Confidence 0011123333333332 2346899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEE
Q 000482 670 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 731 (1464)
Q Consensus 670 d~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 731 (1464)
+.|.++. +.+|++|.++++|||++.+++||+||++.++..++|++||++|.|.+..+.+
T Consensus 289 ~~F~~g~---~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 289 ADFKSGD---IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHcCC---CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 9998643 4489999999999999999999999999999999999999999998765443
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=4.5e-22 Score=246.49 Aligned_cols=308 Identities=18% Similarity=0.161 Sum_probs=207.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
..++|+|.++++-+ ..+.++++..++|+|||+..+.-+. .. .+..|||+|+ +++.++.+.+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~l--~~--~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPAL--CS--DGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHHH--Hc--CCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 4677999999999999987543322 22 3479999996 7778888888865 45566
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---ccc-CCCceeEEEecccc
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 440 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~---~~L-~~i~w~~VIvDEAH 440 (1464)
.+.+.........-... .....++++++|++.+.... ..+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~~----------------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTD----------------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 66665443321110000 01246789999999886533 222 33467899999999
Q ss_pred ccCCcch-------HHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000482 441 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 513 (1464)
Q Consensus 441 rlKN~~S-------k~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~ 513 (1464)
++..... .+......+.....++|||||-.....++...+++-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9865432 12222233445568999999854433344333332222111000 0
Q ss_pred hhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000482 514 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 593 (1464)
Q Consensus 514 L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~ 593 (1464)
.-|.. .+.+ . .
T Consensus 197 ---------------~r~nl-~~~v--------------------------------------------------~---~ 207 (470)
T TIGR00614 197 ---------------DRPNL-YYEV--------------------------------------------------R---R 207 (470)
T ss_pred ---------------CCCCc-EEEE--------------------------------------------------E---e
Confidence 00000 0000 0 0
Q ss_pred CccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHh
Q 000482 594 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 673 (1464)
Q Consensus 594 ~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn 673 (1464)
.. ...+..+.+++.+ ...+.++||||......+.|...|...|+++..++|+++..+|..+++.|.
T Consensus 208 ~~-------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 208 KT-------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred CC-------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 00 0011112222221 134678899999999999999999999999999999999999999999998
Q ss_pred ccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 674 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 674 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
.+. +.+|++|.+.|.|||++.+++||+|+++.++..+.|++||++|.|+...+.+|
T Consensus 274 ~g~---~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RDE---IQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCC---CcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 644 34899999999999999999999999999999999999999999988766554
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.90 E-value=6.8e-22 Score=244.64 Aligned_cols=314 Identities=17% Similarity=0.258 Sum_probs=215.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHH-HHHHHhCCCC-cEEEEEcc-ccHHHHHHHHHHHC---C
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERIS-PHLVVAPL-STLRNWEREFATWA---P 359 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~l~~~~~~-p~LIVvP~-sll~qW~~E~~k~~---P 359 (1464)
..+.|+|.+++..+ ..+.++|+..++|+|||...+.. +..+...... ..||+||. .+..||.+++..+. +
T Consensus 25 ~~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 35889999999877 57889999999999999875444 4444333223 68999996 67789999988764 5
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCceeEEEec
Q 000482 360 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 437 (1464)
Q Consensus 360 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~VIvD 437 (1464)
++++..++|.......+... ....+|+|+|++.+..... .+.--.+.+||+|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred CcEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 78888888876554333221 1357899999998865422 2222356899999
Q ss_pred cccccCCcc--hHHHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000482 438 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 514 (1464)
Q Consensus 438 EAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L 514 (1464)
|||++.... ..+...+..+.. ...+++|||+-. ++-. + .
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~-------------------------------l---~ 196 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAA-------------------------------I---S 196 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHH-------------------------------H---H
Confidence 999986543 234444444443 346899999611 1000 0 0
Q ss_pred hhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000482 515 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 594 (1464)
Q Consensus 515 ~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~ 594 (1464)
..++ .-| . .+.+.... ... . +. .+.+.
T Consensus 197 ~~~~----------~~~-~---~i~~~~~~--------------------~~~--~-------i~---~~~~~------- 223 (460)
T PRK11776 197 QRFQ----------RDP-V---EVKVESTH--------------------DLP--A-------IE---QRFYE------- 223 (460)
T ss_pred HHhc----------CCC-E---EEEECcCC--------------------CCC--C-------ee---EEEEE-------
Confidence 0000 000 0 00000000 000 0 00 00000
Q ss_pred ccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhc
Q 000482 595 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 674 (1464)
Q Consensus 595 ~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~ 674 (1464)
+....|+..|..+|... .+.++||||+.....+.|.+.|...|+.+..++|.++..+|+.+++.|.+
T Consensus 224 -----------~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~ 290 (460)
T PRK11776 224 -----------VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN 290 (460)
T ss_pred -----------eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 01122666777777543 45689999999999999999999999999999999999999999999986
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 675 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 675 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
+.. .+|++|.++++|||++.+++||+||.+.++..++||+||++|.|+.-. .|.|++.+
T Consensus 291 g~~---~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 291 RSC---SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CCC---cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 443 489999999999999999999999999999999999999999997643 45556553
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=7.8e-22 Score=244.96 Aligned_cols=316 Identities=18% Similarity=0.280 Sum_probs=211.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCC--------CCcEEEEEcc-ccHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER--------ISPHLVVAPL-STLRNWEREFA 355 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~~--------~~p~LIVvP~-sll~qW~~E~~ 355 (1464)
..+.++|.+++..+ ..|.++|+...+|+|||+..+ .++..+.... ....|||+|+ .+..|+.+.+.
T Consensus 108 ~~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 35899999998866 678999999999999998864 3444444321 2368999996 67788988888
Q ss_pred HHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCce
Q 000482 356 TWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKW 431 (1464)
Q Consensus 356 k~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w 431 (1464)
.+.. ++++..++|..+....++.. ....++|+|+|++++..... .+.--..
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 7753 56788888875443322221 11357899999999864322 1111245
Q ss_pred eEEEeccccccCCcc--hHHHHHHHhcc---cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHH
Q 000482 432 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 506 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~~--Sk~~~al~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~ 506 (1464)
.+|||||||++.+.. ..+...+..+. ....+++|||.- +++.++. .. |
T Consensus 239 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~---~~---------------~-------- 291 (475)
T PRK01297 239 EVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLA---KQ---------------W-------- 291 (475)
T ss_pred ceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHH---HH---------------h--------
Confidence 789999999997543 22334444443 235789999941 1111111 00 0
Q ss_pred HHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000482 507 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 586 (1464)
Q Consensus 507 i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~ 586 (1464)
+ ..+. .+.+.... .... . +. .|-+
T Consensus 292 -------~---------------~~~~---~v~~~~~~-------------------~~~~--~-------~~---~~~~ 315 (475)
T PRK01297 292 -------T---------------TDPA---IVEIEPEN-------------------VASD--T-------VE---QHVY 315 (475)
T ss_pred -------c---------------cCCE---EEEeccCc-------------------CCCC--c-------cc---EEEE
Confidence 0 0000 00000000 0000 0 00 0000
Q ss_pred cccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHH
Q 000482 587 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 666 (1464)
Q Consensus 587 L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq 666 (1464)
. +..+.|..+|..++.. ....++||||+....++.|...|...|+.+..++|.++..+|.
T Consensus 316 ~------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 316 A------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRI 375 (475)
T ss_pred E------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 0 0112344455555543 2346999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 667 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 667 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
.+++.|.++. ..+|++|.++++|||++.+++||+||.++++..++|++||++|.|+.-. ++.|++.+
T Consensus 376 ~~~~~Fr~G~---~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 376 KTLEGFREGK---IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred HHHHHHhCCC---CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 9999998644 3489999999999999999999999999999999999999999998654 33444443
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.90 E-value=9.4e-22 Score=246.07 Aligned_cols=315 Identities=16% Similarity=0.205 Sum_probs=208.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHH-HHHHHhC--------CCCcEEEEEcc-ccHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE--------RISPHLVVAPL-STLRNWEREFA 355 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~l~~~--------~~~p~LIVvP~-sll~qW~~E~~ 355 (1464)
..+.|+|.+++..+ ..+.++|+..++|+|||+..+.. +..+... .....|||+|. .+..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 36889999998776 47889999999999999986543 4343321 12268999996 56688888888
Q ss_pred HHCCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCce
Q 000482 356 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKW 431 (1464)
Q Consensus 356 k~~P~--l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w 431 (1464)
.+... ++++.+.|.......+... ...++|+|+|++.+.... ..+.--..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 87643 4555555544322222110 134789999998775321 12222345
Q ss_pred eEEEeccccccCCc--chHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000482 432 QCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 509 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~--~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 509 (1464)
.+|||||||++... ...+...+..+.....+++|||.-. .+.. +...+
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~---l~~~~-------------------------- 321 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVEK---FASSL-------------------------- 321 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHHH---HHHHh--------------------------
Confidence 78999999998653 2344555566666788999999511 1111 00000
Q ss_pred HHHhhhhhhHHHHHhhHhhcCCCc--eeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000482 510 LHRMLAPHLLRRVKKDVMKELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 587 (1464)
Q Consensus 510 L~~~L~p~~LRR~K~dv~~~LPpk--~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L 587 (1464)
+...+.-.... ...+.. ....+.+
T Consensus 322 ----~~~~~~i~~~~---~~~~~~~v~q~~~~~----------------------------------------------- 347 (518)
T PLN00206 322 ----AKDIILISIGN---PNRPNKAVKQLAIWV----------------------------------------------- 347 (518)
T ss_pred ----CCCCEEEEeCC---CCCCCcceeEEEEec-----------------------------------------------
Confidence 00000000000 000000 0000000
Q ss_pred ccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh-cCCeEEEEEcCCCHHHHH
Q 000482 588 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQ 666 (1464)
Q Consensus 588 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~-~g~~~~ridGs~s~~eRq 666 (1464)
....|...|.++|........++|||++.....+.|...|.. .|+++..++|+++..+|.
T Consensus 348 -------------------~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 348 -------------------ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred -------------------cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 011233344445544433456899999999999999999974 699999999999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 667 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 667 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
.+++.|.++.. -+|++|.++++|||++.+++||+||++.++..++|++||++|.|..-. ++.|++.+
T Consensus 409 ~il~~Fr~G~~---~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 409 EVMKSFLVGEV---PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred HHHHHHHCCCC---CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 99999987544 489999999999999999999999999999999999999999997543 44456543
No 34
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.90 E-value=7.8e-21 Score=234.49 Aligned_cols=412 Identities=18% Similarity=0.243 Sum_probs=242.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC-CcEEEEEcc-ccHHHHHHHHHHHCCCCeE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPL-STLRNWEREFATWAPQMNV 363 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~-~p~LIVvP~-sll~qW~~E~~k~~P~l~v 363 (1464)
..||+||.+-+.-. . +.|+|+|..||+|||..|+.++...++... ++++++||+ .++.|-...|...+-.-.+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999987544 3 899999999999999999888877766544 599999997 5566777888877644556
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC---CceeEEEecccc
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 440 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~---i~w~~VIvDEAH 440 (1464)
....|+...+.... ......+|++.|.+.+..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~--------------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRG--------------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchh--------------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 66665533322110 1124568999999999887544332 348999999999
Q ss_pred ccCCcc--hHHHHHHHhccc--ccEEeecccccCCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhh------------hh
Q 000482 441 RLKNKD--SKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFG--SLEEFQEEFKD------------IN 502 (1464)
Q Consensus 441 rlKN~~--Sk~~~al~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~--~~~~F~e~f~~------------~~ 502 (1464)
|..... +...+.+...+. ...|+|||||- ++.....+.+.=|... +. ....-...|.. ..
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~ 267 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLC 267 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHh
Confidence 985433 334444444432 35789999997 6666665555444333 11 11111222211 11
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeee-------eccc------CCHHHHH-HHHHHHHHHH-HHHHhcCCc
Q 000482 503 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELI-------LRVE------LSSKQKE-YYKAILTRNY-QILTRRGGA 567 (1464)
Q Consensus 503 ~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~i-------v~v~------ls~~Qk~-~Y~~il~~~~-~~l~~~~~~ 567 (1464)
.......|..+++|++.+-.... |.+..-.. +..+ .-..|+- +|...+.... ..+...+ -
T Consensus 268 ~~~~~~~f~~~i~p~l~~l~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~g-i 342 (746)
T KOG0354|consen 268 ERDIEDPFGMIIEPLLQQLQEEG----LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDG-I 342 (746)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcC----ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcc-h
Confidence 22344556677777665433222 11111000 0000 0011110 1111111100 0011000 0
Q ss_pred hhhHHHHHHHHHHHhCCc----ccccCCCCCc-cchhH---HHHHHH----hhhhHHHHHHHHHHHHHhc--CceEEEEe
Q 000482 568 QISLINVVMELRKLCCHP----YMLEGVEPDI-EDTNE---SFKQLL----ESSGKLQLLDKMMVKLKEQ--GHRVLIYS 633 (1464)
Q Consensus 568 ~~~l~nil~~LRk~c~HP----~L~~~~e~~~-~~~~~---~~~~li----~~SgKl~~L~kLL~~l~~~--g~KVLIFS 633 (1464)
+ +.+.+..+.....-- |+....+... ..... .+..+. ...+|+..|.++|....+. ..|+|||+
T Consensus 343 r--~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFv 420 (746)
T KOG0354|consen 343 R--FVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFV 420 (746)
T ss_pred h--hHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEE
Confidence 0 111111111000000 0000000000 00000 011111 1368999999999877654 57999999
Q ss_pred cchhhHHHHHHHHh-h--cCCeEEEEEc--------CCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000482 634 QFQHMLDLLEDYLT-F--KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 702 (1464)
Q Consensus 634 q~~~~LdiL~~~L~-~--~g~~~~ridG--------s~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 702 (1464)
.+...++.|..+|. . -|++...+-| +++..+.+++|+.|+++..+ +|++|..|.+|||+..||.||
T Consensus 421 e~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVI 497 (746)
T KOG0354|consen 421 ETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVI 497 (746)
T ss_pred ehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEE
Confidence 99999999999997 2 3556555555 46788889999999986555 899999999999999999999
Q ss_pred EecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 000482 703 IYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 746 (1464)
Q Consensus 703 i~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~ 746 (1464)
.||..-||...+||+|| +|. +.-.++.|.+ ..+..-++
T Consensus 498 cYd~~snpIrmIQrrGR-gRa---~ns~~vll~t--~~~~~~~E 535 (746)
T KOG0354|consen 498 CYDYSSNPIRMVQRRGR-GRA---RNSKCVLLTT--GSEVIEFE 535 (746)
T ss_pred EecCCccHHHHHHHhcc-ccc---cCCeEEEEEc--chhHHHHH
Confidence 99999999999999999 774 4444555555 34444333
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=1.1e-21 Score=240.40 Aligned_cols=313 Identities=17% Similarity=0.225 Sum_probs=209.6
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH-HHHHhCC--------CCcEEEEEcc-ccHHHHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 356 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~l~~~~--------~~p~LIVvP~-sll~qW~~E~~k 356 (1464)
.+.|.|.+++.-+ ..+.++|+..++|+|||+..+..+ ..+.... ...+|||||. .+..||.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999998765 578899999999999999875443 3343211 1258999996 667889888877
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcee
Q 000482 357 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 432 (1464)
Q Consensus 357 ~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~ 432 (1464)
+.. ++++..++|........... ...++|+|+|++.+.... ..+.--.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 653 57777788765433222110 124689999999886432 223333567
Q ss_pred EEEeccccccCCcc--hHHHHHHHhccc---ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000482 433 CMIVDEGHRLKNKD--SKLFSSLKQYST---RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 507 (1464)
Q Consensus 433 ~VIvDEAHrlKN~~--Sk~~~al~~l~~---~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i 507 (1464)
+|||||||++.... ..+...+..+.. ...+++|||.-. .+.++
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~------------------------------- 207 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVREL------------------------------- 207 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHH-------------------------------
Confidence 89999999986533 223333444432 235788999511 11100
Q ss_pred HHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000482 508 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 587 (1464)
Q Consensus 508 ~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L 587 (1464)
...++ .-| .. +.+.-.. .... . + .+.++
T Consensus 208 ------~~~~~----------~~p--~~--i~v~~~~-------------------~~~~--~-------i----~~~~~ 235 (423)
T PRK04837 208 ------AFEHM----------NNP--EY--VEVEPEQ-------------------KTGH--R-------I----KEELF 235 (423)
T ss_pred ------HHHHC----------CCC--EE--EEEcCCC-------------------cCCC--c-------e----eEEEE
Confidence 00000 000 00 0000000 0000 0 0 00000
Q ss_pred ccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHH
Q 000482 588 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 667 (1464)
Q Consensus 588 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~ 667 (1464)
. .....|+..|..++.. ....++||||+....++.|...|...|+++..++|.++..+|..
T Consensus 236 ~-----------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 Y-----------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred e-----------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 0 0012356666666654 24679999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 668 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 668 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
+++.|+++.. .+|++|.++++|||++.+++||+||+++++..|+|++||++|.|+.-.+ +-|++.
T Consensus 297 ~l~~F~~g~~---~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGDL---DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCCC---cEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 9999987544 4899999999999999999999999999999999999999999977544 445544
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.89 E-value=2.9e-21 Score=237.40 Aligned_cols=313 Identities=16% Similarity=0.195 Sum_probs=207.9
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHH-HHHHHhC-----CCCcEEEEEcc-ccHHHHHHHHHHHC
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE-----RISPHLVVAPL-STLRNWEREFATWA 358 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~l~~~-----~~~p~LIVvP~-sll~qW~~E~~k~~ 358 (1464)
..+.++|.+++..+ ..+.++|+...+|+|||+.++.. +..+... +...+||++|. .+..|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999998766 46788999999999999986544 3444321 12378999996 56678877777665
Q ss_pred C--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeEE
Q 000482 359 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 434 (1464)
Q Consensus 359 P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~V 434 (1464)
. ++++..++|.......... ....++|+|+|++.+.... ..+..-.+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~--------------------------l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEV--------------------------FSENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHH--------------------------hcCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 5788888886544322111 0135789999998876432 22233356789
Q ss_pred EeccccccCCcc--hHHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000482 435 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 511 (1464)
Q Consensus 435 IvDEAHrlKN~~--Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 511 (1464)
||||||++.... ..+...+..+. ....+++|||+-...+.++. ..+
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~------------------~~~------------- 200 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFA------------------ERL------------- 200 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHH------------------HHH-------------
Confidence 999999986543 22223333332 23458999997211111100 000
Q ss_pred HhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000482 512 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 591 (1464)
Q Consensus 512 ~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~ 591 (1464)
+ .... .+.+....... ....|-+...
T Consensus 201 --~----------------~~~~--~i~~~~~~~~~--------------------------------~~i~~~~~~~-- 226 (434)
T PRK11192 201 --L----------------NDPV--EVEAEPSRRER--------------------------------KKIHQWYYRA-- 226 (434)
T ss_pred --c----------------cCCE--EEEecCCcccc--------------------------------cCceEEEEEe--
Confidence 0 0000 00111000000 0000000000
Q ss_pred CCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHH
Q 000482 592 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 592 e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~ 671 (1464)
+ ....|..+|..++.. ....++|||+.....++.|...|...|+.+..++|.++..+|..+++.
T Consensus 227 -----~---------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 227 -----D---------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred -----C---------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 0 012355555555543 246799999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
|..+. +.+|++|.++++|||++.+++||+||+++++..++|++||++|.|....+.++
T Consensus 291 f~~G~---~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 291 LTDGR---VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred HhCCC---CcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 98644 45899999999999999999999999999999999999999999987655443
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.88 E-value=3.5e-21 Score=242.68 Aligned_cols=309 Identities=17% Similarity=0.268 Sum_probs=208.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH-HHHHhC------C--CCcEEEEEcc-ccHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGE------R--ISPHLVVAPL-STLRNWEREFA 355 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~l~~~------~--~~p~LIVvP~-sll~qW~~E~~ 355 (1464)
..+.|.|..++..+ ..+.++|+..++|+|||+..+..+ ..+... . ...+|||+|. .+..|+.+++.
T Consensus 30 ~~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 36889999999876 578999999999999999875544 334321 1 1378999996 66789999998
Q ss_pred HHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc---ccCCCc
Q 000482 356 TWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIK 430 (1464)
Q Consensus 356 k~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~---~L~~i~ 430 (1464)
+|.. ++++..++|........... ...++|+|+|.+.+..... .+....
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhh
Confidence 8874 45677777765433221110 1257899999998865432 233335
Q ss_pred eeEEEeccccccCCcc--hHHHHHHHhcc---cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHH
Q 000482 431 WQCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 505 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~--Sk~~~al~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~ 505 (1464)
..+|||||||++-... ..+...+..+. ....+++|||.- +.+.++.
T Consensus 160 v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l~---------------------------- 210 (572)
T PRK04537 160 CEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLELA---------------------------- 210 (572)
T ss_pred eeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHHH----------------------------
Confidence 6789999999985432 22333334443 235688999951 1111100
Q ss_pred HHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeeccc-CCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCC
Q 000482 506 QISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 584 (1464)
Q Consensus 506 ~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~-ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~H 584 (1464)
..++. -|. ...+... .+. . .++ |
T Consensus 211 ---------~~~l~----------~p~--~i~v~~~~~~~----------------------~---------~i~----q 234 (572)
T PRK04537 211 ---------YEHMN----------EPE--KLVVETETITA----------------------A---------RVR----Q 234 (572)
T ss_pred ---------HHHhc----------CCc--EEEeccccccc----------------------c---------cee----E
Confidence 00000 000 0000000 000 0 000 0
Q ss_pred cccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHH
Q 000482 585 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAE 664 (1464)
Q Consensus 585 P~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~e 664 (1464)
-+.+. ....|+..|..++.. ..+.++||||+....++.|.++|...|+.+..++|.++..+
T Consensus 235 ~~~~~-----------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 235 RIYFP-----------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred EEEec-----------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 00000 012244455555543 34789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEE
Q 000482 665 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 731 (1464)
Q Consensus 665 Rq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 731 (1464)
|..+++.|.++. ..+||+|.++++|||++.+++||+||.++++..++|++||++|.|..-.+..
T Consensus 296 R~~il~~Fr~G~---~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 296 RESLLNRFQKGQ---LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHHHcCC---CeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 999999998643 4589999999999999999999999999999999999999999998755443
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.88 E-value=7e-21 Score=241.47 Aligned_cols=310 Identities=16% Similarity=0.222 Sum_probs=210.5
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCCC-CcEEEEEcc-ccHHHHHHHHHHHC---C
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPL-STLRNWEREFATWA---P 359 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~~~-~p~LIVvP~-sll~qW~~E~~k~~---P 359 (1464)
.++.|+|.+++..+ ..+.++|+...+|+|||++.+ .++..+..... ..+|||||. .+..||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36899999998776 467899999999999999864 44444433322 368999996 67789999887764 6
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeEEEec
Q 000482 360 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 437 (1464)
Q Consensus 360 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIvD 437 (1464)
+++++.++|.......+... ....+|+|+|.+.+.... ..+.--...+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888876443322221 124689999998886432 12222356789999
Q ss_pred cccccCCcc--hHHHHHHHhcccc-cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000482 438 EGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 514 (1464)
Q Consensus 438 EAHrlKN~~--Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L 514 (1464)
|||.+-+.. ..+...+..+... ..+++|||.- ..+.++.
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------------------------- 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRIT------------------------------------- 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHHH-------------------------------------
Confidence 999886543 3344555555443 4688999951 1111000
Q ss_pred hhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000482 515 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 594 (1464)
Q Consensus 515 ~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~ 594 (1464)
..| +.......+..... ... ...+-|..
T Consensus 199 ~~~------------l~~~~~i~i~~~~~-----------------------~~~-----------~i~q~~~~------ 226 (629)
T PRK11634 199 RRF------------MKEPQEVRIQSSVT-----------------------TRP-----------DISQSYWT------ 226 (629)
T ss_pred HHH------------cCCCeEEEccCccc-----------------------cCC-----------ceEEEEEE------
Confidence 000 00000000000000 000 00000000
Q ss_pred ccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhc
Q 000482 595 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 674 (1464)
Q Consensus 595 ~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~ 674 (1464)
+....|...|..+|.. ....++||||......+.|...|...|+....++|.++..+|..++++|..
T Consensus 227 -----------v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 227 -----------VWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred -----------echhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 0112355555555543 234689999999999999999999999999999999999999999999986
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEE
Q 000482 675 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 731 (1464)
Q Consensus 675 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 731 (1464)
+. ..+||+|.+++.|||++.+++||+||.+.++..++|++||++|.|..-.+.+
T Consensus 294 G~---~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 294 GR---LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CC---CCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 44 4489999999999999999999999999999999999999999997654433
No 39
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.1e-22 Score=229.46 Aligned_cols=341 Identities=17% Similarity=0.327 Sum_probs=236.5
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcccc-HHHHHHHHHHHCC--C
Q 000482 284 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAP--Q 360 (1464)
Q Consensus 284 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~k~~P--~ 360 (1464)
+...+||||...++-|. .-...+.||+.-.+|.|||+..+..+..+. +.+||+|..++ +.||+..|..|.. +
T Consensus 299 Pst~iRpYQEksL~KMF-GNgRARSGiIVLPCGAGKtLVGvTAa~tik----K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMF-GNGRARSGIIVLPCGAGKTLVGVTAACTIK----KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHHh-CCCcccCceEEEecCCCCceeeeeeeeeec----ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 34679999999998772 223345689999999999998776665442 37899999654 7999999999982 2
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----------hhcccCCCc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----------DSASLKPIK 430 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~----------d~~~L~~i~ 430 (1464)
-.+..|+.+..++ ......|+||||.++.. -..++....
T Consensus 374 ~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 3455565544332 12456799999999842 245678889
Q ss_pred eeEEEeccccccCCcchHHHHH-HHhcccccEEeecccccCCCHHHHHHHHHhh-cCCCCCChHHHHHHHhhhhhHHHHH
Q 000482 431 WQCMIVDEGHRLKNKDSKLFSS-LKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 508 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~Sk~~~a-l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL-~p~~f~~~~~F~e~f~~~~~~~~i~ 508 (1464)
|.++|+||+|-+- .+.++. +..+.+..+|+||||-+... |-..=|||| .|..+. ..| .
T Consensus 423 WGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------AnW---------m 482 (776)
T KOG1123|consen 423 WGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------ANW---------M 482 (776)
T ss_pred eeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------ccH---------H
Confidence 9999999999863 344444 44557778899999976543 112223443 232221 111 1
Q ss_pred HHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000482 509 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 588 (1464)
Q Consensus 509 ~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~ 588 (1464)
.|.+ ...+.......|+|+||+. +|+..+..+... ..++
T Consensus 483 dL~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k--------r~lL---------------- 521 (776)
T KOG1123|consen 483 DLQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK--------RMLL---------------- 521 (776)
T ss_pred HHHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh--------hhee----------------
Confidence 1111 1134455667899999984 666555432100 0000
Q ss_pred cCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHH
Q 000482 589 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 668 (1464)
Q Consensus 589 ~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~ 668 (1464)
.+-+..|++...-||+.+..+|.|+||||..+-.|. .|.-..|-+| |.|.|++.+|-++
T Consensus 522 ----------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk---~YAikl~Kpf--IYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 522 ----------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALK---EYAIKLGKPF--IYGPTSQNERMKI 580 (776)
T ss_pred ----------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHH---HHHHHcCCce--EECCCchhHHHHH
Confidence 112456888888888888889999999998766544 4444444444 7899999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhcHHHHHHhhhhcCCC----CcEEEEEEEeCCCHHHH
Q 000482 669 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIEER 743 (1464)
Q Consensus 669 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~----k~V~VyrLvt~~TvEE~ 743 (1464)
++.|+..+.-..+| -+++|...|+|+.|+.+|-..+.. +-.+..||+||+.|.-.. -.+..|-||+++|.|-.
T Consensus 581 LqnFq~n~~vNTIF--lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 581 LQNFQTNPKVNTIF--LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHhcccCCccceEE--EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 99998755444434 479999999999999999999986 567889999999996532 26889999999998754
Q ss_pred H
Q 000482 744 M 744 (1464)
Q Consensus 744 I 744 (1464)
-
T Consensus 659 Y 659 (776)
T KOG1123|consen 659 Y 659 (776)
T ss_pred h
Confidence 3
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=1.1e-20 Score=240.54 Aligned_cols=304 Identities=18% Similarity=0.175 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
..++|+|.+++.-+ ..+.++++..+||.|||+..+..+. .. .+.+|||+|. +++.+|.+.+... ++.+.
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal--~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPAL--VL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHH--Hc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999766 5788999999999999987543332 22 2479999996 7778888888765 45555
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCceeEEEecccccc
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 442 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAHrl 442 (1464)
.+.+..........+.- ......+++++|++.+... ...+...++.+|||||||.+
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55554332221111100 0124577899999887642 23344456789999999998
Q ss_pred CCcch---HHHHHH----HhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000482 443 KNKDS---KLFSSL----KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 515 (1464)
Q Consensus 443 KN~~S---k~~~al----~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~ 515 (1464)
..... ..+..+ ..+.....++||||+-.....++...+.+-.|..+... |
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~----------------- 208 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F----------------- 208 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C-----------------
Confidence 65331 112222 23344567999999844433333333322211110000 0
Q ss_pred hhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000482 516 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 595 (1464)
Q Consensus 516 p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~ 595 (1464)
.-|.....+ ..
T Consensus 209 -------------~r~nl~~~v--------------------------------------------------~~------ 219 (607)
T PRK11057 209 -------------DRPNIRYTL--------------------------------------------------VE------ 219 (607)
T ss_pred -------------CCCcceeee--------------------------------------------------ee------
Confidence 000000000 00
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhcc
Q 000482 596 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 675 (1464)
Q Consensus 596 ~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~ 675 (1464)
...++..|..++.. ..+.++||||+.....+.+...|...|+++..++|+++..+|..+++.|..+
T Consensus 220 ------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 220 ------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred ------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 00011112222222 3578999999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEE
Q 000482 676 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 676 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 730 (1464)
. ..+|++|.+.|.|||++.++.||+||.+.+...+.|++||++|.|....+.
T Consensus 286 ~---~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 286 D---LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred C---CCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 4 348999999999999999999999999999999999999999999765543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=1.7e-20 Score=238.91 Aligned_cols=304 Identities=19% Similarity=0.217 Sum_probs=209.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
.+++|+|.++++-+ ..+.++++...+|.|||+.+...+. .. .+.+|||+|. +++.++...+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpal--~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPAL--LL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHHH--Hc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999776 5678999999999999998653332 22 3578999995 7778898888875 46677
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCceeEEEecccccc
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 442 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAHrl 442 (1464)
.+++.........-.. .......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~----------------------~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEK----------------------ALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 7776644332111100 00124678999999988542 23455567899999999998
Q ss_pred CCcch-------HHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000482 443 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 515 (1464)
Q Consensus 443 KN~~S-------k~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~ 515 (1464)
..... .+......+.....++||||+-.....++...+.+-.+..+.. .|
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC-----------------
Confidence 64321 2333333444556899999984443333333322211111000 00
Q ss_pred hhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000482 516 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 595 (1464)
Q Consensus 516 p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~ 595 (1464)
.-|.....++
T Consensus 197 -------------~r~nl~~~v~--------------------------------------------------------- 206 (591)
T TIGR01389 197 -------------DRPNLRFSVV--------------------------------------------------------- 206 (591)
T ss_pred -------------CCCCcEEEEE---------------------------------------------------------
Confidence 0000000000
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhcc
Q 000482 596 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 675 (1464)
Q Consensus 596 ~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~ 675 (1464)
....+...+.++|... .+.++||||......+.|..+|...|+++..++|+++.++|..+++.|..+
T Consensus 207 -----------~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 207 -----------KKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred -----------eCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0011222333334332 267899999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEE
Q 000482 676 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 676 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 730 (1464)
. +.+|++|.+.|.|||++.++.||+|+++.|+..+.|++||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 4 458999999999999999999999999999999999999999999766554
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.87 E-value=1.8e-20 Score=227.93 Aligned_cols=316 Identities=18% Similarity=0.263 Sum_probs=206.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEcc-ccHHHHHHHHHHHCC--C
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 360 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~--~~~p~LIVvP~-sll~qW~~E~~k~~P--~ 360 (1464)
..+.|+|..++..+ ..+.+.|+..++|+|||+.++..+...... ....+|||+|. .+..|+.+.+..++. .
T Consensus 49 ~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999998776 578899999999999999876544444332 22379999996 566778777777653 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeEEEecc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 438 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIvDE 438 (1464)
..+....|....+..+... ....+|+|+|++.+.... ..+..-.+++|||||
T Consensus 125 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred ceEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 4455556655433322111 123589999998875321 122233568999999
Q ss_pred ccccCCc--chHHHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000482 439 GHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 515 (1464)
Q Consensus 439 AHrlKN~--~Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~ 515 (1464)
||++... ...+...++.+.. ...+++|||+- +...++.. .|. ..
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~------------------~~~--------------~~ 225 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP-NEILELTT------------------KFM--------------RD 225 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC-HHHHHHHH------------------HHc--------------CC
Confidence 9998643 2345555655544 35789999962 11111000 000 00
Q ss_pred hhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000482 516 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 595 (1464)
Q Consensus 516 p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~ 595 (1464)
|..+ ..+.+. ..+.......+.+.
T Consensus 226 ~~~~-~~~~~~-~~~~~~~~~~~~~~------------------------------------------------------ 249 (401)
T PTZ00424 226 PKRI-LVKKDE-LTLEGIRQFYVAVE------------------------------------------------------ 249 (401)
T ss_pred CEEE-EeCCCC-cccCCceEEEEecC------------------------------------------------------
Confidence 0000 000000 00000000000000
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhcc
Q 000482 596 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 675 (1464)
Q Consensus 596 ~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~ 675 (1464)
. ...++..+..++..+ ...++||||.....++.+...|...++.+..++|.++..+|+.+++.|.++
T Consensus 250 --~---------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 250 --K---------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred --h---------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 0 001222233333321 346899999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 676 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 676 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
. ..+|++|.++++|||++.+++||+||++.++..++|++||++|.|.. -.++.|++..
T Consensus 317 ~---~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 317 S---TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred C---CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 4 44899999999999999999999999999999999999999999864 4456667654
No 43
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.9e-20 Score=223.68 Aligned_cols=311 Identities=19% Similarity=0.288 Sum_probs=222.3
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHh------CCCCc-EEEEEcc-ccHHHHHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPL-STLRNWEREFATW 357 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~------~~~~p-~LIVvP~-sll~qW~~E~~k~ 357 (1464)
.+.|-|..+.-.+ ..|+.+|....+|+|||+.- |-.+.++.. ...+| +||++|+ -+-.|-..++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4667777664433 57899999999999999884 455556554 12245 8999997 5557888999998
Q ss_pred CCCCe--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeE
Q 000482 358 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 433 (1464)
Q Consensus 358 ~P~l~--vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~ 433 (1464)
...+. .++++|.......++.. ....+|+|+|...+.... ..+.--+..+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 86554 77777776665555443 235789999999886542 3344446779
Q ss_pred EEeccccccCC--cchHHHHHHHhc-ccc-cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000482 434 MIVDEGHRLKN--KDSKLFSSLKQY-STR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 509 (1464)
Q Consensus 434 VIvDEAHrlKN--~~Sk~~~al~~l-~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 509 (1464)
+|+|||.++.. ...++-+.+..+ .+. ..|+-|||= +
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTw--------------------p-------------------- 282 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATW--------------------P-------------------- 282 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeec--------------------c--------------------
Confidence 99999999854 556777888888 433 357777772 0
Q ss_pred HHHhhhhhhHHHHHhhHhhcCCCceeeeecc-cCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000482 510 LHRMLAPHLLRRVKKDVMKELPPKKELILRV-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 588 (1464)
Q Consensus 510 L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v-~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~ 588 (1464)
--+|.+..+++. -+....+... ++.. ...+.++-.
T Consensus 283 -------~~v~~lA~~fl~--~~~~i~ig~~~~~~a---------------------------~~~i~qive-------- 318 (519)
T KOG0331|consen 283 -------KEVRQLAEDFLN--NPIQINVGNKKELKA---------------------------NHNIRQIVE-------- 318 (519)
T ss_pred -------HHHHHHHHHHhc--CceEEEecchhhhhh---------------------------hcchhhhhh--------
Confidence 011111222221 1111111111 0000 000111111
Q ss_pred cCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHH-hcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHH
Q 000482 589 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 667 (1464)
Q Consensus 589 ~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~-~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~ 667 (1464)
.+...+|...|.++|.... ..+.||||||+.....+.|+..|...+|+...|+|..++.+|..
T Consensus 319 ----------------~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 319 ----------------VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred ----------------hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 1224568888888898887 44569999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEE
Q 000482 668 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 668 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 730 (1464)
+++.|..+... +|++|..++.||+++.+++||+||+|-|...|++|+||.+|-|++-...
T Consensus 383 ~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 383 VLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred HHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 99999765554 8999999999999999999999999999999999999999988775443
No 44
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=3.1e-20 Score=210.32 Aligned_cols=322 Identities=21% Similarity=0.294 Sum_probs=230.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhCCCC-cEEEEEccccH-HHHHHHHHHHC--CCC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 361 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~l~~~~~~-p~LIVvP~sll-~qW~~E~~k~~--P~l 361 (1464)
.+.+-|.+++-.+ ..|+.+|.+.|+|+|||.. +|-++..|+.+... ..||++|.--| .|-...|+.+. -++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4667888887655 6889999999999999988 57777888876544 67999997555 55666677775 467
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC---ceeEEEecc
Q 000482 362 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQCMIVDE 438 (1464)
Q Consensus 362 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i---~w~~VIvDE 438 (1464)
++.++.|..+........ ..+.||+|.|...+......-+.+ ...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888899988776543331 247899999999987665432222 345799999
Q ss_pred ccccCCcc--hHHHHHHHhcccccE-EeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000482 439 GHRLKNKD--SKLFSSLKQYSTRHR-VLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 515 (1464)
Q Consensus 439 AHrlKN~~--Sk~~~al~~l~~~~r-LLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~ 515 (1464)
|.||.|.+ -.+...|+.+..+.+ +|.|||- . ..+.+|...
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t----------------------------------~kv~kL~ra-- 255 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATM-T----------------------------------KKVRKLQRA-- 255 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-c----------------------------------hhhHHHHhh--
Confidence 99998864 456777777776554 7788883 1 122222100
Q ss_pred hhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000482 516 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 595 (1464)
Q Consensus 516 p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~ 595 (1464)
.+-. ++.|.-+. .|+ ++..|.+ -||+-
T Consensus 256 -------------sl~~----p~~v~~s~----ky~----------------------tv~~lkQ----~ylfv------ 282 (476)
T KOG0330|consen 256 -------------SLDN----PVKVAVSS----KYQ----------------------TVDHLKQ----TYLFV------ 282 (476)
T ss_pred -------------ccCC----CeEEeccc----hhc----------------------chHHhhh----heEec------
Confidence 0100 01111110 111 1111111 12221
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhcc
Q 000482 596 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 675 (1464)
Q Consensus 596 ~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~ 675 (1464)
...-|-..|..||.++ .|..+||||....+.+.+.-+|+..|+....++|.++...|-.+++.|+++
T Consensus 283 -----------~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 283 -----------PGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred -----------cccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 1122445566666654 468999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000482 676 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 748 (1464)
Q Consensus 676 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a 748 (1464)
.-+ +|++|+.++.|+|.+.+|+||+||.|-+-..|++|.||+.|.| +.-.+..||+. +|-..+++.
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 544 8999999999999999999999999999999999999999999 56667788888 444444443
No 45
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.85 E-value=1.2e-21 Score=197.80 Aligned_cols=143 Identities=30% Similarity=0.480 Sum_probs=127.6
Q ss_pred CCccCHHHHHHHHHHHHhhcccchHHhhhCcccChHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCchhhhhcCCCCCC
Q 000482 1083 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGN 1162 (1464)
Q Consensus 1083 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1162 (1464)
..+|+..||+|||.||..||||+|+.|.+||++.| +|-||.+....|
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~I-------iNEPFk~e~~kg-------------------------- 49 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAI-------INEPFKTESQKG-------------------------- 49 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceee-------eccccccccccc--------------------------
Confidence 36899999999999999999999999999999666 555554422221
Q ss_pred CcccccccCccccccchhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCCCCCCcccccc
Q 000482 1163 DSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSNEIPSEEPESERKT 1242 (1464)
Q Consensus 1163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 (1464)
+|.+|++| |+.+||+|||+||.+|.|++.++
T Consensus 50 ---------------------------nfle~KNk---FLaRRfKLLEQaLvIEEqLrRAa------------------- 80 (173)
T PF08074_consen 50 ---------------------------NFLEMKNK---FLARRFKLLEQALVIEEQLRRAA------------------- 80 (173)
T ss_pred ---------------------------chHHHHHH---HHHHHHHHHHHHHhhhccccchh-------------------
Confidence 68899999 99999999999999999999888
Q ss_pred cCCCCCCccccchhhhhccCcccccChHHHhhhhcCCCccchhhhHHHHHHHHHhhccchhhhhhhccCCchhhHHHhhh
Q 000482 1243 TERPSPTSMEIDSQMVDQLPKLEAITSEEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNL 1322 (1464)
Q Consensus 1243 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1322 (1464)
..+.+..+.+|.|. +++.|.++.++.+.+.+-+..+.+||+||...|+++|
T Consensus 81 --~lnl~~~p~~p~~~---------------------------L~~~fae~e~laeshq~l~kes~~gnk~a~~vl~kvL 131 (173)
T PF08074_consen 81 --YLNLSQDPSHPVMA---------------------------LNARFAELECLAESHQHLSKESLAGNKPANAVLHKVL 131 (173)
T ss_pred --hccCcCCCCCchHH---------------------------HhhhhhhhhhccchhhhcchhhhCCCCCccHHHHHHH
Confidence 77888888888888 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhc
Q 000482 1323 QLLETLCEDVNQIL 1336 (1464)
Q Consensus 1323 ~~~~~~~~~~~~~~ 1336 (1464)
.|||.|.+||-.-.
T Consensus 132 ~qleelLsDMKaDV 145 (173)
T PF08074_consen 132 NQLEELLSDMKADV 145 (173)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999997643
No 46
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=9.1e-20 Score=241.50 Aligned_cols=356 Identities=17% Similarity=0.212 Sum_probs=206.5
Q ss_pred CCCcHHHHHHHHHHHHhhcc-CCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEc-cccHHHHHHHHHHHCCCCe
Q 000482 286 GSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQMN 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~-~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP-~sll~qW~~E~~k~~P~l~ 362 (1464)
..||+||.++++-+...+.. .++++|.+.+|+|||+++++++..+... +.+++||||| ..|+.||..+|..+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 57999999999777666554 4678999999999999999999888765 3459999999 5788999999998743211
Q ss_pred --EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-------ccCCCceeE
Q 000482 363 --VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQC 433 (1464)
Q Consensus 363 --vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~-------~L~~i~w~~ 433 (1464)
+....+... +... .......|+|+|++++.+... .+..-.|++
T Consensus 492 ~~~~~i~~i~~----L~~~------------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdl 543 (1123)
T PRK11448 492 QTFASIYDIKG----LEDK------------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDC 543 (1123)
T ss_pred cchhhhhchhh----hhhh------------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccE
Confidence 100111000 0000 011346799999999865421 122346889
Q ss_pred EEeccccccCCc-----------------chHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHH
Q 000482 434 MIVDEGHRLKNK-----------------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE 496 (1464)
Q Consensus 434 VIvDEAHrlKN~-----------------~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e 496 (1464)
||||||||.... .+...+.+..+. ..+|+|||||..+. .++|. .| .+ .
T Consensus 544 IIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG-----~p-v~-~------ 608 (1123)
T PRK11448 544 IIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG-----EP-VY-T------ 608 (1123)
T ss_pred EEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC-----Ce-eE-E------
Confidence 999999996321 123333344343 58899999997432 11111 00 00 0
Q ss_pred HHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeec----ccCC-HHHHHHHHHHHHHHHHHHHhcCCchhhH
Q 000482 497 EFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQISL 571 (1464)
Q Consensus 497 ~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~----v~ls-~~Qk~~Y~~il~~~~~~l~~~~~~~~~l 571 (1464)
| .-.+.+. ..+++ ..-||....... +... ..+...|...... +....
T Consensus 609 -Y---sl~eAI~------DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~------ 660 (1123)
T PRK11448 609 -Y---SYREAVI------DGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLAT------ 660 (1123)
T ss_pred -e---eHHHHHh------cCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhcc------
Confidence 0 0000000 00110 001333222110 0111 1111122211100 00000
Q ss_pred HHHHHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHH-HHHHHHHHHHh-cCceEEEEecchhhHHHHHHHHhhc
Q 000482 572 INVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQ-LLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFK 649 (1464)
Q Consensus 572 ~nil~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~-~L~kLL~~l~~-~g~KVLIFSq~~~~LdiL~~~L~~~ 649 (1464)
...........+...+-...... ++..++..+.. .+.|+||||.....++.+.+.|...
T Consensus 661 -------------------l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 661 -------------------LEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred -------------------CcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00000000000111111111111 12233333322 2369999999999988888777542
Q ss_pred ------CC---eEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhh
Q 000482 650 ------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 720 (1464)
Q Consensus 650 ------g~---~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRa 720 (1464)
++ .+..|+|+++ +++.+|++|.++... .+|+++...++|+|.+.+++||++.+.-++..++|++||+
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRg 797 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRA 797 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhh
Confidence 22 4567999885 578899999764433 5799999999999999999999999999999999999999
Q ss_pred hhcCC---CCcEEEEEEE
Q 000482 721 HRLGQ---TNKVMIFRLI 735 (1464)
Q Consensus 721 hRiGQ---~k~V~VyrLv 735 (1464)
.|..- +....||.++
T Consensus 798 tR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 798 TRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccCCccCCCceEEEEehH
Confidence 99865 5677888875
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.85 E-value=9e-20 Score=234.07 Aligned_cols=311 Identities=16% Similarity=0.145 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
..+||+|.++++.+ ..|.++|+...+|.|||+....-+.. . .+.+|||+|+ +|+.++...+... ++.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL~--~--~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPALI--C--PGITLVISPLVSLIQDQIMNLLQA--NIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHHH--c--CCcEEEEeCHHHHHHHHHHHHHhC--CCeEE
Confidence 57999999999766 57889999999999999876433322 1 3579999996 6666555555442 56677
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hcccCC----CceeEEEec
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKP----IKWQCMIVD 437 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---~~~L~~----i~w~~VIvD 437 (1464)
.+.+............-. .....+++++++|.+.+... ...+.. -...+||||
T Consensus 529 ~L~s~~s~~eq~~ilr~l--------------------~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQEL--------------------SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred EEECCCCHHHHHHHHHHH--------------------HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 776654432221111000 00124688999999987532 112211 236789999
Q ss_pred cccccCCcchH---HHHH----HHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000482 438 EGHRLKNKDSK---LFSS----LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 510 (1464)
Q Consensus 438 EAHrlKN~~Sk---~~~a----l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 510 (1464)
|||.+-..... -++. ...+.....++||||.-.....++...|.+..+..|.. .|
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf------------ 650 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SF------------ 650 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------cc------------
Confidence 99998654321 1222 22344556799999975444444444333221111100 00
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 590 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~ 590 (1464)
.-|.....++ .-.
T Consensus 651 ------------------~RpNL~y~Vv--~k~----------------------------------------------- 663 (1195)
T PLN03137 651 ------------------NRPNLWYSVV--PKT----------------------------------------------- 663 (1195)
T ss_pred ------------------CccceEEEEe--ccc-----------------------------------------------
Confidence 0000000000 000
Q ss_pred CCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHH
Q 000482 591 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 670 (1464)
Q Consensus 591 ~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id 670 (1464)
...+..|.+++... ..+...||||......+.|..+|...|+++..++|+++..+|..+++
T Consensus 664 ------------------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 664 ------------------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred ------------------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 00011112222211 12457899999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEE
Q 000482 671 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 733 (1464)
Q Consensus 671 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vyr 733 (1464)
.|..+.. .+|++|.|.|.|||++.++.||+|+.+-++..|.|++||++|.|+.-.+..|+
T Consensus 725 ~F~~Gei---~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 725 QWSKDEI---NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHhcCCC---cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9987443 48999999999999999999999999999999999999999999887665554
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.84 E-value=4.1e-19 Score=233.72 Aligned_cols=322 Identities=19% Similarity=0.221 Sum_probs=201.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCC------CC-cEEEEEcc-ccHHHHHHH---
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER------IS-PHLVVAPL-STLRNWERE--- 353 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~~------~~-p~LIVvP~-sll~qW~~E--- 353 (1464)
..|+|+|..++.-+ ..+.++|+..+||+|||+.++ .++..+.... .+ .+|+|+|+ .+..++.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 45999999998765 678899999999999999875 4444454321 12 58999996 555666553
Q ss_pred ----HHHHC-------CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh
Q 000482 354 ----FATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 422 (1464)
Q Consensus 354 ----~~k~~-------P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d 422 (1464)
+..++ |++++.+++|+.......+. .....+|+|||++.+...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~--------------------------l~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM--------------------------LKKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH--------------------------HhCCCCEEEecHHHHHHH
Confidence 33332 46788888887654332111 013568999999988532
Q ss_pred h------cccCCCceeEEEeccccccCCcc--hHHHHH---HHhcc--cccEEeecccccCCCHHHHHHHHHhhcCCCCC
Q 000482 423 S------ASLKPIKWQCMIVDEGHRLKNKD--SKLFSS---LKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 489 (1464)
Q Consensus 423 ~------~~L~~i~w~~VIvDEAHrlKN~~--Sk~~~a---l~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~ 489 (1464)
. ..|. ...+|||||+|.+.+.. ..+... +..+. ...+++||||. .++.++.. ||......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc
Confidence 1 1233 34679999999997532 222222 23332 34679999996 23333322 22111000
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchh
Q 000482 490 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 569 (1464)
Q Consensus 490 ~~~~F~e~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~ 569 (1464)
. . -++..+ +...........+.++...
T Consensus 234 ~------------~----------~r~~~i------v~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 G------------E----------PRDCEI------VDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred C------------C----------CCceEE------EccCCCccceEEEeccCcc-------------------------
Confidence 0 0 000000 0000000000000000000
Q ss_pred hHHHHHHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh-
Q 000482 570 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 648 (1464)
Q Consensus 570 ~l~nil~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~- 648 (1464)
+.... . ......+.+.|..+...++++||||+.....+.+...|..
T Consensus 261 -----------------l~~~~------~----------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTP------A----------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------ccccc------c----------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 00000 0 0001112234444455688999999999999999888875
Q ss_pred -----cCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhc
Q 000482 649 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 723 (1464)
Q Consensus 649 -----~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 723 (1464)
.+..+..++|+++.++|..+++.|.++. +.+|++|.++++|||++.+|+||+|+++.++..++|++||++|-
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~---i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE---LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCC---CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 2467889999999999999999998644 45899999999999999999999999999999999999999976
Q ss_pred -CCCCcEEEEE
Q 000482 724 -GQTNKVMIFR 733 (1464)
Q Consensus 724 -GQ~k~V~Vyr 733 (1464)
|......++-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4445555554
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=7.5e-19 Score=224.61 Aligned_cols=305 Identities=15% Similarity=0.249 Sum_probs=198.7
Q ss_pred CCCcHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC--C
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 360 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P--~ 360 (1464)
.+|.++|..++..+....... .+.+|..++|+|||+.++..+......+ ..+||++|. .+..||.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 579999999998886554332 4689999999999998765554444432 389999997 555899999999986 5
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
+++.+++|+..........+. ......+|+|+|+..+.... .+. +..+|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~~--~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EFK--RLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-ccc--ccceEEEechh
Confidence 888899987544321111100 01246799999999886432 222 45799999999
Q ss_pred ccCCcchHHHHHHHh-cc---cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000482 441 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 516 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~-l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p 516 (1464)
++.-. ....+.. .. ..+.|++||||....+. +..+ ..+.
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~----------------~~l~-------------- 410 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY----------------GDLD-------------- 410 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc----------------CCcc--------------
Confidence 97432 1222222 22 46789999999653211 0000 0000
Q ss_pred hhHHHHHhhHhhcCCCcee--eeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000482 517 HLLRRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 594 (1464)
Q Consensus 517 ~~LRR~K~dv~~~LPpk~e--~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~ 594 (1464)
..+...+|+... ....+.-.
T Consensus 411 -------~~~i~~~p~~r~~i~~~~~~~~--------------------------------------------------- 432 (630)
T TIGR00643 411 -------TSIIDELPPGRKPITTVLIKHD--------------------------------------------------- 432 (630)
T ss_pred -------eeeeccCCCCCCceEEEEeCcc---------------------------------------------------
Confidence 000111221110 00000000
Q ss_pred ccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchh--------hHHHHHHHHhh--cCCeEEEEEcCCCHHH
Q 000482 595 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTF--KKWQYERIDGKVGGAE 664 (1464)
Q Consensus 595 ~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~--------~LdiL~~~L~~--~g~~~~ridGs~s~~e 664 (1464)
+...+...+.+....|++++|||.... .+..+.+.|.. .++++..++|.++..+
T Consensus 433 ----------------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 433 ----------------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----------------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 001112223333346788888887642 23344455543 4788999999999999
Q ss_pred HHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhcHHHHHHhhhhcCCCCcEE
Q 000482 665 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 665 Rq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~V~ 730 (1464)
|..+++.|.++.. .+|++|.+.++|||++.+++||+++.+. +-..+.|+.||++|-|..-.+.
T Consensus 497 R~~i~~~F~~g~~---~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGEV---DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCCC---CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 9999999987544 4899999999999999999999999984 6788999999999998765443
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.84 E-value=1e-18 Score=228.01 Aligned_cols=307 Identities=18% Similarity=0.208 Sum_probs=202.9
Q ss_pred CCCcHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC--
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 360 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~-- 360 (1464)
.++.|+|..++..+..-...+ .+.++..++|+|||..++..+......+ ..+||+||+ .+..|....|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 568999999999886554443 5789999999999998765444333332 489999997 5557889999988755
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
+++.+++|.......-...+ .....+.+|||+|+..+.++. .+. +..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~----------------------~l~~g~~dIVIGTp~ll~~~v-~f~--~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILK----------------------ELASGKIDILIGTHKLLQKDV-KFK--DLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHH----------------------HHHcCCceEEEchHHHhhCCC-Ccc--cCCEEEeeccc
Confidence 45666766543222111100 001246789999997764332 232 44789999999
Q ss_pred ccCCcchHHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHh-hcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 000482 441 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHF-LDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 518 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~f-L~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~ 518 (1464)
++.. .....++.+. ..+.|++||||+...+.. .+.. .++. +
T Consensus 584 rfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~---~l~g~~d~s-------------------------------~ 626 (926)
T TIGR00580 584 RFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHM---SMSGIRDLS-------------------------------I 626 (926)
T ss_pred ccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHH---HHhcCCCcE-------------------------------E
Confidence 9743 2334555554 457899999995432211 0000 0000 0
Q ss_pred HHHHHhhHhhcCCCceeeeec---ccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000482 519 LRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 595 (1464)
Q Consensus 519 LRR~K~dv~~~LPpk~e~iv~---v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~ 595 (1464)
+ ..||.....+. ++.+.
T Consensus 627 I---------~~~p~~R~~V~t~v~~~~~--------------------------------------------------- 646 (926)
T TIGR00580 627 I---------ATPPEDRLPVRTFVMEYDP--------------------------------------------------- 646 (926)
T ss_pred E---------ecCCCCccceEEEEEecCH---------------------------------------------------
Confidence 0 11111100000 00000
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc--CCeEEEEEcCCCHHHHHHHHHHHh
Q 000482 596 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFN 673 (1464)
Q Consensus 596 ~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~--g~~~~ridGs~s~~eRq~~Id~Fn 673 (1464)
..+...++.. ..+|.+++|||+.+..++.+.+.|... ++++..++|.++..+|.+++.+|.
T Consensus 647 ----------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~ 709 (926)
T TIGR00580 647 ----------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY 709 (926)
T ss_pred ----------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 0000011122 235789999999999999999999864 789999999999999999999998
Q ss_pred ccCCCceEEEeeccccccccCccCCCEEEEecCC-CChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 674 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 674 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
++.. .+||+|.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|.|+..
T Consensus 710 ~Gk~---~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 710 KGEF---QVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred cCCC---CEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 7544 489999999999999999999999986 4566889999999998764 445555544
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.83 E-value=5.9e-19 Score=227.00 Aligned_cols=304 Identities=16% Similarity=0.208 Sum_probs=198.5
Q ss_pred CCCcHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC--
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 360 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~-- 360 (1464)
.+|.++|..++.-+...+..+ .+.+|..++|+|||+.++..+...... ...+||++|+ .+..|+.+.|.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-g~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-GYQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 579999999998886655432 478999999999999887555444433 2379999997 5568899999999865
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
+++.+++|...........+. ......+|+|+|+..+.... .+. +..+|||||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~v-~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDDV-EFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhcccc-hhc--ccceEEEechh
Confidence 788888887654221111100 01246899999998875421 233 45689999999
Q ss_pred ccCCcchHHHHHHHhc-ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhH
Q 000482 441 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 519 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~L 519 (1464)
++.- .....+... ...+.|++||||+...+. +..+ .. +..
T Consensus 394 rfg~---~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~----------------g~-------------~~~--- 434 (681)
T PRK10917 394 RFGV---EQRLALREKGENPHVLVMTATPIPRTLA----MTAY----------------GD-------------LDV--- 434 (681)
T ss_pred hhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHc----------------CC-------------Cce---
Confidence 9732 223334333 246789999999542110 0000 00 000
Q ss_pred HHHHhhHhhcCCCcee--eeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000482 520 RRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 597 (1464)
Q Consensus 520 RR~K~dv~~~LPpk~e--~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~ 597 (1464)
.+...+|+... ....+.
T Consensus 435 -----s~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 453 (681)
T PRK10917 435 -----SVIDELPPGRKPITTVVIP-------------------------------------------------------- 453 (681)
T ss_pred -----EEEecCCCCCCCcEEEEeC--------------------------------------------------------
Confidence 00011121100 000000
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchh--------hHHHHHHHHhhc--CCeEEEEEcCCCHHHHHH
Q 000482 598 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 667 (1464)
Q Consensus 598 ~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~--------~LdiL~~~L~~~--g~~~~ridGs~s~~eRq~ 667 (1464)
..+...+...+.+..+.|++++|||..+. ....+.+.|... ++++..++|.++..+|+.
T Consensus 454 -----------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 -----------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -----------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00111122233333467899999997542 233445555443 578999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhcHHHHHHhhhhcCCCCcE
Q 000482 668 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKV 729 (1464)
Q Consensus 668 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~V 729 (1464)
++++|.++.. .+|++|.+.++|||++.+++||+++++. ....+.|+.||++|-|..-.+
T Consensus 523 i~~~F~~g~~---~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 523 VMAAFKAGEI---DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred HHHHHHcCCC---CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 9999986443 4899999999999999999999999984 568889999999998865444
No 52
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.83 E-value=3.4e-19 Score=230.30 Aligned_cols=330 Identities=17% Similarity=0.173 Sum_probs=212.3
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC-CCCeE
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 363 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~-P~l~v 363 (1464)
+|++||.+++..+ ..|.++|+...||+|||+..+ .++..+........|||+|+ .+..|-.++|..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 678999999999999999864 44555544433489999996 55577778888775 35788
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--------cccCCCceeEEE
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 435 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--------~~L~~i~w~~VI 435 (1464)
.+|+|+...... .. -..+.+|+|||++++.... ..|. +..+||
T Consensus 112 ~~~~Gdt~~~~r-~~--------------------------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEER-RW--------------------------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHH-HH--------------------------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 889887654321 00 0124689999999986321 1132 236899
Q ss_pred eccccccCCc-chHHHHHHHhc---c-----cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHH
Q 000482 436 VDEGHRLKNK-DSKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 506 (1464)
Q Consensus 436 vDEAHrlKN~-~Sk~~~al~~l---~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~ 506 (1464)
|||||++.+. .+.+...+..+ . ....+++|||- ++..++.. .+...
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l~g~-------------------- 217 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAAS---RLIGA-------------------- 217 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HHcCC--------------------
Confidence 9999998652 33333333332 1 23578999994 22222211 00000
Q ss_pred HHHHHHhhhhhhHHHHHhhHhh-cCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCc
Q 000482 507 ISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 585 (1464)
Q Consensus 507 i~~L~~~L~p~~LRR~K~dv~~-~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP 585 (1464)
++.+ +.. ..|......+.+. |
T Consensus 218 ---------~~~~------i~~~~~~~~~~~~~~~~-------------------------------------------p 239 (742)
T TIGR03817 218 ---------PVVA------VTEDGSPRGARTVALWE-------------------------------------------P 239 (742)
T ss_pred ---------CeEE------ECCCCCCcCceEEEEec-------------------------------------------C
Confidence 0000 000 0011000000000 0
Q ss_pred ccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc--------CCeEEEEE
Q 000482 586 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERID 657 (1464)
Q Consensus 586 ~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~--------g~~~~rid 657 (1464)
.+........... . -.....+..+|. .+...+.++|||++.....+.|..+|... +.++..++
T Consensus 240 ~~~~~~~~~~~~~----r-~~~~~~~~~~l~----~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 240 PLTELTGENGAPV----R-RSASAEAADLLA----DLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred Ccccccccccccc----c-cchHHHHHHHHH----HHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 0000000000000 0 000112333344 44445889999999999999999888653 56788899
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 658 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 658 Gs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
|+++.++|.+++++|.+ +.+.+|++|.++++|||+...|+||+|+.|-+...++|++||++|.|+.-. ++.++..
T Consensus 311 gg~~~~eR~~ie~~f~~---G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRD---GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHc---CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCC
Confidence 99999999999999976 445589999999999999999999999999999999999999999997643 4445565
Q ss_pred CCHHHHHHH
Q 000482 738 GSIEERMMQ 746 (1464)
Q Consensus 738 ~TvEE~I~~ 746 (1464)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 667776554
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.82 E-value=1.4e-18 Score=231.03 Aligned_cols=304 Identities=18% Similarity=0.225 Sum_probs=199.2
Q ss_pred CCCcHHHHHHHHHHHHhhcc--CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH-HHHHHHHHHHCCC--
Q 000482 286 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ-- 360 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~k~~P~-- 360 (1464)
.++.+.|..++.-+...... ..+.++..+||+|||.+++..+..... ....+||+||+..| .|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-NHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 47899999999876554433 367899999999999987644333322 23489999997554 7788888876644
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
+++.+++|...........+- ......+|+|+|++.+..+. .--+..+|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~~----------------------l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE----------------------AAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH----------------------HHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 466666665433221111000 01246789999998775332 22356789999999
Q ss_pred ccCCcchHHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHhh-cCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 000482 441 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 518 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL-~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~ 518 (1464)
++.. .....++.+. ....|++||||++..+.- .+.++ ++. +
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l---~~~gl~d~~-------------------------------~ 775 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNM---AMSGMRDLS-------------------------------I 775 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH---HHhhCCCcE-------------------------------E
Confidence 9843 2234455554 457899999996543211 00110 000 0
Q ss_pred HHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccch
Q 000482 519 LRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 598 (1464)
Q Consensus 519 LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~ 598 (1464)
+ ..||.....+. . +... ..
T Consensus 776 I---------~~~p~~r~~v~----------------------------------------~-----~~~~-~~------ 794 (1147)
T PRK10689 776 I---------ATPPARRLAVK----------------------------------------T-----FVRE-YD------ 794 (1147)
T ss_pred E---------ecCCCCCCCce----------------------------------------E-----EEEe-cC------
Confidence 0 01111100000 0 0000 00
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc--CCeEEEEEcCCCHHHHHHHHHHHhccC
Q 000482 599 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNAKN 676 (1464)
Q Consensus 599 ~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~--g~~~~ridGs~s~~eRq~~Id~Fn~~~ 676 (1464)
.......++.++. +|.+|+||++.+..++.+.+.|... ++++..++|.++..+|.+++.+|.++.
T Consensus 795 ------------~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk 861 (1147)
T PRK10689 795 ------------SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 (1147)
T ss_pred ------------cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 0000112233332 4679999999999999999999876 789999999999999999999998754
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCC-CChhcHHHHHHhhhhcCCCCcE
Q 000482 677 SSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 729 (1464)
Q Consensus 677 s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k~V 729 (1464)
. .+|++|.+.+.|||++.+++||+.+++ |+...+.|+.||++|.|.+-.+
T Consensus 862 ~---~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 862 F---NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred C---CEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 4 489999999999999999999998876 6778899999999998876433
No 54
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4e-18 Score=212.60 Aligned_cols=329 Identities=21% Similarity=0.316 Sum_probs=223.9
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHh--CCCCc-EEEEEcc-ccHHHHHHHHHHHCC-
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--ERISP-HLVVAPL-STLRNWEREFATWAP- 359 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~--~~~~p-~LIVvP~-sll~qW~~E~~k~~P- 359 (1464)
..+.|.|..++--+ ..+..+|....+|+|||..- |.+|..+.. ....+ .||++|+ .+..|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 46889999998665 57799999999999999874 444555442 22223 9999997 555778888877763
Q ss_pred --CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeEEE
Q 000482 360 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 435 (1464)
Q Consensus 360 --~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VI 435 (1464)
.+++++++|...-...+... . ...||||.|+..+.... ..|..-...++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l-------------------------~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL-------------------------K-RGVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH-------------------------h-cCCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 67788888876655544332 1 13899999999876432 234444567899
Q ss_pred eccccccCCcc--hHHHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000482 436 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 512 (1464)
Q Consensus 436 vDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 512 (1464)
+|||.++.+.. ..+...+..+.. ...++.|||--. .+..|..
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-----------------------------------~i~~l~~ 224 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-----------------------------------DIRELAR 224 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-----------------------------------HHHHHHH
Confidence 99999997753 345555555554 456889999411 1111110
Q ss_pred hhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000482 513 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 592 (1464)
Q Consensus 513 ~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e 592 (1464)
.++- - |. .+.+.... .... . ....|.|+.
T Consensus 225 ---~~l~----------~-p~---~i~v~~~~-------------------~~~~----------~-~~i~q~~~~---- 253 (513)
T COG0513 225 ---RYLN----------D-PV---EIEVSVEK-------------------LERT----------L-KKIKQFYLE---- 253 (513)
T ss_pred ---HHcc----------C-Cc---EEEEcccc-------------------cccc----------c-cCceEEEEE----
Confidence 0110 0 00 11111000 0000 0 000001110
Q ss_pred CCccchhHHHHHHHhh-hhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHH
Q 000482 593 PDIEDTNESFKQLLES-SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 593 ~~~~~~~~~~~~li~~-SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~ 671 (1464)
+.. ..|+.+|..++..... .++||||.....++.|...|...|+++..|+|++++.+|.++++.
T Consensus 254 -------------v~~~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 254 -------------VESEEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred -------------eCCHHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 001 1477777777776433 379999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 751 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K 751 (1464)
|+++.. -+|++|+++++||++...++||+||.+.++..|++|+||.+|.|.+- ..+.|++. .-|...+..+.+.
T Consensus 319 F~~g~~---~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 319 FKDGEL---RVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred HHcCCC---CEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 985444 48999999999999999999999999999999999999999999443 44556665 2255555555554
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.77 E-value=1.7e-17 Score=216.22 Aligned_cols=317 Identities=21% Similarity=0.191 Sum_probs=198.5
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC-CCe
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P-~l~ 362 (1464)
.+|+|+|.+++.-+ +..+.++|++..+|+|||+.+. +++..+. ..+++|+|+|. ++..|+.++|.++.+ +++
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 36999999998642 3578899999999999999985 4444443 23589999995 778899999988753 678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc----ccCCCceeEEEecc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 438 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~----~L~~i~w~~VIvDE 438 (1464)
+.+++|+...+. ......+|+|+|++.+..... .+. ...+|||||
T Consensus 97 v~~~tGd~~~~~-----------------------------~~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE 145 (737)
T PRK02362 97 VGISTGDYDSRD-----------------------------EWLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDE 145 (737)
T ss_pred EEEEeCCcCccc-----------------------------cccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEEC
Confidence 888888643211 011356899999987743221 122 357999999
Q ss_pred ccccCCcc--hHHHHHHHhc----ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000482 439 GHRLKNKD--SKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 512 (1464)
Q Consensus 439 AHrlKN~~--Sk~~~al~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 512 (1464)
+|.+.+.. ..+-..+..+ .....++||||. .|..++... +....+.+
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~w---l~~~~~~~---------------------- 198 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELADW---LDAELVDS---------------------- 198 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHHH---hCCCcccC----------------------
Confidence 99997532 2222222222 234578999996 344444332 22111100
Q ss_pred hhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000482 513 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 592 (1464)
Q Consensus 513 ~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e 592 (1464)
..+|.-+ ...+.... .+ . +. . . +..+.
T Consensus 199 ~~rpv~l--------------~~~v~~~~----------~~-~-----~~--~-~----------------~~~~~---- 225 (737)
T PRK02362 199 EWRPIDL--------------REGVFYGG----------AI-H-----FD--D-S----------------QREVE---- 225 (737)
T ss_pred CCCCCCC--------------eeeEecCC----------ee-c-----cc--c-c----------------cccCC----
Confidence 0001000 00000000 00 0 00 0 0 00000
Q ss_pred CCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc-----------------------
Q 000482 593 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK----------------------- 649 (1464)
Q Consensus 593 ~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~----------------------- 649 (1464)
...+.. ...++......+.++||||+.......+...|...
T Consensus 226 ---------------~~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 226 ---------------VPSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred ---------------CccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 000101 11122222346789999999988766666555321
Q ss_pred -------------CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE----ec-----CC
Q 000482 650 -------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SD 707 (1464)
Q Consensus 650 -------------g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi----~D-----~d 707 (1464)
...+..++|+++..+|..+.+.|.+ +.+.+|++|..++.|||+++..+||. || .+
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~---G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD---RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc---CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 1356788999999999999999976 44568999999999999999877776 77 47
Q ss_pred CChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 708 WNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 708 WNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
.++..+.|++|||+|.|....-.++-++..
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 788999999999999998765555555543
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.77 E-value=4.8e-17 Score=195.06 Aligned_cols=328 Identities=14% Similarity=0.203 Sum_probs=196.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCC
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 386 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~ 386 (1464)
+++..++|+|||.+++..+...... ...++++|+|. +++.|+.+.+..++.. ++..++|...... .... ..
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~-----~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM-----GD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc-----CC
Confidence 5789999999999988877665543 33589999995 7889999999988743 5666666543211 0000 00
Q ss_pred chhhhccccCccccccccccccccEEEecHHHHHhhhcc-c-------CCCceeEEEeccccccCCcch-HHHHHHHhcc
Q 000482 387 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-L-------KPIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 457 (1464)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~-L-------~~i~w~~VIvDEAHrlKN~~S-k~~~al~~l~ 457 (1464)
......... ............+++++|++.+...... + ..+...+||+||+|.+..... .+...+..+.
T Consensus 75 ~~~~~~~~~--~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 75 SEEFEHLFP--LYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred chhHHHHHH--HHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 000000000 0000001123567999999987644222 2 122336899999999875422 2333333332
Q ss_pred --cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCcee
Q 000482 458 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 535 (1464)
Q Consensus 458 --~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e 535 (1464)
....+++|||+- ..+. .| +..+. ..+
T Consensus 153 ~~~~~~i~~SATlp----~~l~-------------------~~---------------~~~~~-----------~~~--- 180 (358)
T TIGR01587 153 DNDVPILLMSATLP----KFLK-------------------EY---------------AEKIG-----------YVE--- 180 (358)
T ss_pred HcCCCEEEEecCch----HHHH-------------------HH---------------HhcCC-----------Ccc---
Confidence 235689999961 0000 00 00000 000
Q ss_pred eeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHH
Q 000482 536 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 615 (1464)
Q Consensus 536 ~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L 615 (1464)
........+. +....|++..... ....|...+
T Consensus 181 ~~~~~~~~~~---------------------------------~~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 181 FNEPLDLKEE---------------------------------RRFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred cccCCCCccc---------------------------------cccccccceeecc---------------ccccCHHHH
Confidence 0000000000 0000111110000 011234445
Q ss_pred HHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCC--eEEEEEcCCCHHHHHHH----HHHHhccCCCceEEEeecccc
Q 000482 616 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 689 (1464)
Q Consensus 616 ~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~--~~~ridGs~s~~eRq~~----Id~Fn~~~s~~~vfLlSTrAg 689 (1464)
.+++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|.+. ++.|.+ +...+|++|.+.
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~---~~~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK---NEKFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC---CCCeEEEECcch
Confidence 5555433 3578999999999999999999987776 48999999999999764 788865 334589999999
Q ss_pred ccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC----cEEEEEEEeCC---CHHHHHHHHHHHHH
Q 000482 690 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 752 (1464)
Q Consensus 690 g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k----~V~VyrLvt~~---TvEE~I~~~a~~K~ 752 (1464)
+.|||+. +++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++...++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999994 8999988765 889999999999999764 45555554444 56666766665554
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.76 E-value=9.8e-17 Score=208.63 Aligned_cols=317 Identities=19% Similarity=0.192 Sum_probs=196.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC-CCe
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P-~l~ 362 (1464)
.+|+|+|.+++.-. +..+.++|++..+|+|||+.+ ++++..+.. ..+.+|+|+|. +++.++.++|..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 36999999998631 267899999999999999998 455555443 33589999995 677888888887752 577
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc----ccCCCceeEEEecc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 438 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~----~L~~i~w~~VIvDE 438 (1464)
+..++|....... ....++|+|+|++.+..... .+. +.++|||||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcC
Confidence 7888876432110 01357899999988754321 222 457899999
Q ss_pred ccccCC--cchHHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000482 439 GHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 515 (1464)
Q Consensus 439 AHrlKN--~~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~ 515 (1464)
+|.+.. ....+...+..+. ....++||||. .|..++.. ++....+.. ..+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl--~n~~~la~---wl~~~~~~~----------------------~~r 199 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATV--GNAEELAE---WLNAELVVS----------------------DWR 199 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccC--CCHHHHHH---HhCCccccC----------------------CCC
Confidence 999864 3344444455543 34578999996 23444432 221111000 000
Q ss_pred hhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000482 516 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 595 (1464)
Q Consensus 516 p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~ 595 (1464)
..|-... ++ .. .+.+.. ....
T Consensus 200 -------------pv~l~~~-~~-~~-------------------------------------------~~~~~~-~~~~ 220 (720)
T PRK00254 200 -------------PVKLRKG-VF-YQ-------------------------------------------GFLFWE-DGKI 220 (720)
T ss_pred -------------CCcceee-Ee-cC-------------------------------------------Ceeecc-Ccch
Confidence 0000000 00 00 000000 0000
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh---------------------------
Q 000482 596 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 648 (1464)
Q Consensus 596 ~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~--------------------------- 648 (1464)
... ...+..++..+...+.++|||+........+...|..
T Consensus 221 -------~~~------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 -------ERF------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred -------hcc------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 000 0111223334445688999999987765544433311
Q ss_pred ------cCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE-------ecCCC-ChhcHH
Q 000482 649 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSDW-NPHADL 714 (1464)
Q Consensus 649 ------~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi-------~D~dW-NP~~d~ 714 (1464)
....+..++|+++.++|..+.+.|.++ .+.+|++|.+.+.|+|+++.++||. ++.+. ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123477899999999999999999864 4458999999999999998887774 22222 345779
Q ss_pred HHHHhhhhcCCCCcEEEEEEEeCCC
Q 000482 715 QAMARAHRLGQTNKVMIFRLITRGS 739 (1464)
Q Consensus 715 QAigRahRiGQ~k~V~VyrLvt~~T 739 (1464)
|++|||+|.|..+.-.++.+++...
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776666666665543
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.75 E-value=6.4e-17 Score=209.26 Aligned_cols=306 Identities=19% Similarity=0.206 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC-CCeE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 363 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P-~l~v 363 (1464)
.+|+|+|.++++-+ ..+.++|++.++|+|||+++...+...... .+.+|+|+|. ++..++.+++.++.. +.++
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 678899999999999999876555444332 2489999995 677888888887652 4667
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCceeEEEeccc
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 439 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~w~~VIvDEA 439 (1464)
....|....... .....+|+|+|++.+..- ...+. ++++|||||+
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEa 144 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEI 144 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecc
Confidence 677765432100 012568999999876432 11222 4679999999
Q ss_pred cccCCcc--hHHHHHH---Hhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000482 440 HRLKNKD--SKLFSSL---KQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 513 (1464)
Q Consensus 440 HrlKN~~--Sk~~~al---~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~ 513 (1464)
|.+.... ..+-..+ +.+. ....++||||+ .|..++. .++....+.. .
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la---~wl~~~~~~~----------------------~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVNPDARILALSATV--SNANELA---QWLNASLIKS----------------------N 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHH---HHhCCCccCC----------------------C
Confidence 9986432 2222222 2222 23568999996 2333332 2222111100 0
Q ss_pred hhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000482 514 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 593 (1464)
Q Consensus 514 L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~ 593 (1464)
.+ ..| ....++... ..| .+....
T Consensus 198 ~r-------------~vp-l~~~i~~~~------~~~-------------------------------------~~~~~~ 220 (674)
T PRK01172 198 FR-------------PVP-LKLGILYRK------RLI-------------------------------------LDGYER 220 (674)
T ss_pred CC-------------CCC-eEEEEEecC------eee-------------------------------------eccccc
Confidence 00 011 011111000 000 000000
Q ss_pred CccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc------------------------
Q 000482 594 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 649 (1464)
Q Consensus 594 ~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~------------------------ 649 (1464)
.+ ..+..++......+.++|||+........+...|...
T Consensus 221 ----------------~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 221 ----------------SQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ----------------cc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 00 0022334444456789999999888777666666432
Q ss_pred -CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecC---------CCChhcHHHHHHh
Q 000482 650 -KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMAR 719 (1464)
Q Consensus 650 -g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~---------dWNP~~d~QAigR 719 (1464)
...+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|||+++ .+||++|. ++++..+.|++||
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g---~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNR---YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcC---CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhc
Confidence 12356689999999999999999764 3458999999999999996 57887764 3577788999999
Q ss_pred hhhcCCCCcEEEE
Q 000482 720 AHRLGQTNKVMIF 732 (1464)
Q Consensus 720 ahRiGQ~k~V~Vy 732 (1464)
|+|.|....-..+
T Consensus 360 AGR~g~d~~g~~~ 372 (674)
T PRK01172 360 AGRPGYDQYGIGY 372 (674)
T ss_pred CCCCCCCCcceEE
Confidence 9999976653333
No 59
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.74 E-value=2.8e-16 Score=201.58 Aligned_cols=362 Identities=15% Similarity=0.122 Sum_probs=201.0
Q ss_pred CCCcHHHHHHHHHHHHhhcc------CCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcc-ccHHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATW 357 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~------~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~-sll~qW~~E~~k~ 357 (1464)
.-.|+||..+|+-+...+.. .++|+|.+.+|+|||++++.++..+.... ...+|||||. .|..||.++|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34789999999988776654 46899999999999999999988877543 3489999995 7889999999998
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-cccCCC----cee
Q 000482 358 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPI----KWQ 432 (1464)
Q Consensus 358 ~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~-~~L~~i----~w~ 432 (1464)
.++... -.++ ...+... .......|+|||.+.+.... ..+..+ ...
T Consensus 317 ~~~~~~--~~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE--RIES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc--ccCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753110 0111 1111110 00123579999999997521 112211 123
Q ss_pred EEEeccccccCCcchHHHHHHH-hcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000482 433 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 511 (1464)
Q Consensus 433 ~VIvDEAHrlKN~~Sk~~~al~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 511 (1464)
+||+|||||... ......++ .+...++++|||||+...-.+-+ ..|...|+.
T Consensus 368 lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~----------- 420 (667)
T TIGR00348 368 VVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGR----------- 420 (667)
T ss_pred EEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccccccccc--------------ccccCCCCC-----------
Confidence 899999998642 33445553 56677999999999753211111 111000100
Q ss_pred HhhhhhhHHHHHhhHhhcCCCceeeeecc--cCCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhCCccc
Q 000482 512 RMLAPHLLRRVKKDVMKELPPKKELILRV--ELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPYM 587 (1464)
Q Consensus 512 ~~L~p~~LRR~K~dv~~~LPpk~e~iv~v--~ls~~Qk~~Y~~il~~~~~~l~~~~~~--~~~l~nil~~LRk~c~HP~L 587 (1464)
.+-.|.+....+| ..+.|.....+.+ .++... .+..+............. ...+......+..
T Consensus 421 -~i~~Y~~~~AI~d--G~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 487 (667)
T TIGR00348 421 -YLHRYFITDAIRD--GLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKK------- 487 (667)
T ss_pred -eEEEeeHHHHhhc--CCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh-------
Confidence 0111111111111 0122222222222 121111 111111111100000000 0001111111111
Q ss_pred ccCCCCCccchhHHHHHHHhhhhHHHHHHHHHH-H---H-HhcCceEEEEecchhhHHHHHHHHhhc-----CCeEEEEE
Q 000482 588 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMV-K---L-KEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERID 657 (1464)
Q Consensus 588 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~-~---l-~~~g~KVLIFSq~~~~LdiL~~~L~~~-----g~~~~rid 657 (1464)
++.+...+..+.+.+. . . ...+.|.+|||.....+..+.+.|... +...+.++
T Consensus 488 -----------------~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s 550 (667)
T TIGR00348 488 -----------------ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMT 550 (667)
T ss_pred -----------------hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEec
Confidence 1111111222222111 1 1 123579999999998887777776432 34566677
Q ss_pred cCCCHH---------------------HHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHH
Q 000482 658 GKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 716 (1464)
Q Consensus 658 Gs~s~~---------------------eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QA 716 (1464)
|+.... ....++++|.++ +.+-+|+++....+|+|.+.++++++.-|--+ +..+|+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 551 GKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred CCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 764332 234789999764 34457888899999999999999988877654 568999
Q ss_pred HHhhhhc-CC-CCcEEEEEEEe
Q 000482 717 MARAHRL-GQ-TNKVMIFRLIT 736 (1464)
Q Consensus 717 igRahRi-GQ-~k~V~VyrLvt 736 (1464)
+||+.|+ +. +....|+.++.
T Consensus 628 i~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 628 IARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHhccccCCCCCCEEEEECcC
Confidence 9999995 43 34567777753
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.73 E-value=2.9e-16 Score=198.20 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..+.+.+..+...|..|||||..+...+.|...|...|+++..++|.+...+|..+...|+ .+ .++++|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~---~g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ---KG--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC---CC--eEEEEcc
Confidence 467999999999998889999999999999999999999999999999999998877766655443 23 3799999
Q ss_pred ccccccCcc---------CCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEE
Q 000482 688 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 688 Agg~GINL~---------~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 730 (1464)
.+|.|+++. ..++||.|+++-+. .+.|+.||++|.|..-.+.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE
Confidence 999999999 78999999999765 4599999999999876543
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.73 E-value=1.8e-16 Score=201.74 Aligned_cols=107 Identities=23% Similarity=0.411 Sum_probs=88.7
Q ss_pred HhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHH-----HHHHHHhc----cC----CCceEEEeecccc
Q 000482 623 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAG 689 (1464)
Q Consensus 623 ~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq-----~~Id~Fn~----~~----s~~~vfLlSTrAg 689 (1464)
...+.++||||+.+..++.|...|...++ ..++|.+++.+|. .++++|.. .. .....+||+|+++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 35678999999999999999999998887 8999999999999 78899975 21 1124589999999
Q ss_pred ccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCc--EEEEEE
Q 000482 690 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 734 (1464)
Q Consensus 690 g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~--V~VyrL 734 (1464)
+.|||+.. ++||++..+ +..++||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999975 999987766 4799999999999998643 444433
No 62
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.72 E-value=4.7e-16 Score=197.07 Aligned_cols=329 Identities=21% Similarity=0.216 Sum_probs=218.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCC-C----C-cEEEEEccccHHH-HHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER-I----S-PHLVVAPLSTLRN-WEREFATW 357 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~~-~----~-p~LIVvP~sll~q-W~~E~~k~ 357 (1464)
.+|+|.|..++.-+ ..|.|+++...||+|||..|+ .++..+...+ . + .+|-|.|+..|.+ -.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 47899999998766 799999999999999999984 5566666652 1 2 5799999766644 55666665
Q ss_pred C--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hcccCCC
Q 000482 358 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 429 (1464)
Q Consensus 358 ~--P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d------~~~L~~i 429 (1464)
. -++.+-+-||+...... .+.....+||+|||.|++.-. ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er--------------------------~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK--------------------------QKMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHh--------------------------hhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 5 25666666666443221 112345789999999998532 4456666
Q ss_pred ceeEEEeccccccCCc--chHHHHHHHhc---cc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh
Q 000482 430 KWQCMIVDEGHRLKNK--DSKLFSSLKQY---ST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 503 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~--~Sk~~~al~~l---~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~ 503 (1464)
+| |||||.|.+.+. .++++-.|..+ .. -.|++||||= .++.+ +..||.+..-
T Consensus 151 r~--VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~--------------- 208 (814)
T COG1201 151 RY--VIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD--------------- 208 (814)
T ss_pred cE--EEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC---------------
Confidence 65 999999999864 34555554444 33 4689999994 23333 3334433210
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000482 504 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 583 (1464)
Q Consensus 504 ~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~ 583 (1464)
+. .-|......+..+.|.++--.
T Consensus 209 ------------~~------~Iv~~~~~k~~~i~v~~p~~~--------------------------------------- 231 (814)
T COG1201 209 ------------PC------EIVDVSAAKKLEIKVISPVED--------------------------------------- 231 (814)
T ss_pred ------------ce------EEEEcccCCcceEEEEecCCc---------------------------------------
Confidence 00 000000000111111111000
Q ss_pred CcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcC-CeEEEEEcCCCH
Q 000482 584 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 662 (1464)
Q Consensus 584 HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g-~~~~ridGs~s~ 662 (1464)
.... ..=...+.+.+..+.++...+|||++...+.+.|...|...+ ..+..-+||.+.
T Consensus 232 -----------~~~~----------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 232 -----------LIYD----------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred -----------cccc----------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 0000 001122334455555566689999999999999999998877 889999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhh-hhcCCCCcEEEEEEEeCCCHH
Q 000482 663 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRLITRGSIE 741 (1464)
Q Consensus 663 ~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRa-hRiGQ~k~V~VyrLvt~~TvE 741 (1464)
+.|..+-++|.++. ...+++|....+||+.-..|.||.|.+|-.-...+||+||+ ||+|....- ++++.+ .+
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r~ 363 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-RD 363 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-HH
Confidence 99999999998755 44799999999999999999999999999999999999999 677765443 344555 55
Q ss_pred HHHHHHHHHH
Q 000482 742 ERMMQMTKKK 751 (1464)
Q Consensus 742 E~I~~~a~~K 751 (1464)
+.+--.+..+
T Consensus 364 dllE~~vi~~ 373 (814)
T COG1201 364 DLLECLVLAD 373 (814)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.9e-16 Score=184.34 Aligned_cols=357 Identities=17% Similarity=0.225 Sum_probs=212.7
Q ss_pred CCcHHHHHHHHHHHHhhc-----cCCcEEEEecCCCchHHHH-HHHHHHHHhCCCC--cEEEEEcc-ccHHHHHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQS-IAFLASLFGERIS--PHLVVAPL-STLRNWEREFATW 357 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~-----~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~--p~LIVvP~-sll~qW~~E~~k~ 357 (1464)
.++|-|...+-|+..-.. ..+.+.++..+|+|||+.. |-++..|...... +.|||+|. .+..|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 588999999999865544 3566789999999999984 5555555444333 88999996 5557899999999
Q ss_pred CCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC---cee
Q 000482 358 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 432 (1464)
Q Consensus 358 ~P~--l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i---~w~ 432 (1464)
+++ +-|....|...-+...++..- .......||+|+|...+......-+.| +-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~---------------------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLAS---------------------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhc---------------------CCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 975 455556665554443333210 011236799999999998765543333 456
Q ss_pred EEEeccccccCCcc--hHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000482 433 CMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 510 (1464)
Q Consensus 433 ~VIvDEAHrlKN~~--Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 510 (1464)
++|||||.||.+.. ..+...+..+....++.+. ..++.+..-..|-.++. +
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e-------------------~ 350 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSE-------------------L 350 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh--------hhhhhhcccCCchhhHH-------------------H
Confidence 89999999987632 2222333222222222111 11111111001110000 0
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 590 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~ 590 (1464)
...+ .....+.++-.+.+.+.+.-.. +..| -..||.++-.
T Consensus 351 ~t~~------------------------~~~~~~l~kL~~satLsqdP~K--------------l~~l--~l~~Prl~~v 390 (620)
T KOG0350|consen 351 LTKL------------------------GKLYPPLWKLVFSATLSQDPSK--------------LKDL--TLHIPRLFHV 390 (620)
T ss_pred Hhhc------------------------CCcCchhHhhhcchhhhcChHH--------------Hhhh--hcCCCceEEe
Confidence 0000 0000111111111111111100 0111 1234433322
Q ss_pred CCCCcc--c-hhHHHHHHHhhhh--HHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHh----hcCCeEEEEEcCCC
Q 000482 591 VEPDIE--D-TNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 661 (1464)
Q Consensus 591 ~e~~~~--~-~~~~~~~li~~Sg--Kl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~----~~g~~~~ridGs~s 661 (1464)
..+.+. . ....-...+-... |-..+..+|.. ....++|+|+........|...|. .-..++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 211100 0 0000011111222 34455566655 357899999999988877777775 34566677999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 662 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 662 ~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
...|.+.+.+|+.++.. +||+++++++||++...+.||.||++-.-..|++|.||..|.||.-. +|.++...
T Consensus 469 ~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~~ 540 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDKH 540 (620)
T ss_pred HHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeeccc
Confidence 99999999999876654 89999999999999999999999999999999999999999999753 45555543
No 64
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.4e-16 Score=170.91 Aligned_cols=313 Identities=19% Similarity=0.272 Sum_probs=216.0
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhC-CCCcEEEEEccccH-HHHHHHHHHHCCC--Ce
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGE-RISPHLVVAPLSTL-RNWEREFATWAPQ--MN 362 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~l~~~-~~~p~LIVvP~sll-~qW~~E~~k~~P~--l~ 362 (1464)
....|..++--+ .+|+++|.....|+|||.+ +|+++..+.-. +..-+||+.|..-| .|-..-+...... +.
T Consensus 50 PS~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 50 PSAIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred chHHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 334566666554 6899999999999999987 56666655332 22378999997544 5555556555543 44
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh--hhcccCCCceeEEEecccc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~--d~~~L~~i~w~~VIvDEAH 440 (1464)
+..+.|.+.--+.|+..+ ...+|+.-|+..+.. ....|+.....++|+|||.
T Consensus 126 ~hacigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EEEEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 555566665444443321 355788888877654 2455666677899999999
Q ss_pred ccCCc--chHHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 000482 441 RLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 517 (1464)
Q Consensus 441 rlKN~--~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~ 517 (1464)
.+.|. ..+++...+.++ ....+++|||- ++|+..+.++..+++.
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv----------------------------- 226 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV----------------------------- 226 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce-----------------------------
Confidence 98664 567888888887 55678999994 2333333333222221
Q ss_pred hHHHHHhhHhhcCCCceeeeecccCCHHH-HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000482 518 LLRRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 596 (1464)
Q Consensus 518 ~LRR~K~dv~~~LPpk~e~iv~v~ls~~Q-k~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~ 596 (1464)
...+-+-+++-.- +.+|-..-.
T Consensus 227 ----------------rilvkrdeltlEgIKqf~v~ve~----------------------------------------- 249 (400)
T KOG0328|consen 227 ----------------RILVKRDELTLEGIKQFFVAVEK----------------------------------------- 249 (400)
T ss_pred ----------------eEEEecCCCchhhhhhheeeech-----------------------------------------
Confidence 1111122222211 111111000
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccC
Q 000482 597 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 676 (1464)
Q Consensus 597 ~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~ 676 (1464)
..=|+..|..|-..|- -...+|||+..+..|.|.+.|+...+.+..++|.+..++|.+++..|..+.
T Consensus 250 -----------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~ 316 (400)
T KOG0328|consen 250 -----------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK 316 (400)
T ss_pred -----------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC
Confidence 0013334444443332 347999999999999999999999999999999999999999999999877
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 677 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 677 s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
+. +|++|.+-+.||+++.++.||+||.|-|+..|++|+||.+|.|.+- .+..|+...
T Consensus 317 Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~ 373 (400)
T KOG0328|consen 317 SR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSD 373 (400)
T ss_pred ce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHH
Confidence 75 8999999999999999999999999999999999999999999764 334666654
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.2e-15 Score=190.54 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=109.5
Q ss_pred hhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000482 607 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 686 (1464)
Q Consensus 607 ~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlST 686 (1464)
....|+..|..++......+.++||||......+.|...|...|+++..++|.+...++..+...+.. + .++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEc
Confidence 34668999999998887889999999999999999999999999999999999888777666665542 2 379999
Q ss_pred cccccccCc---cCCC-----EEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHH
Q 000482 687 RAGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 747 (1464)
Q Consensus 687 rAgg~GINL---~~Ad-----~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~ 747 (1464)
..+|.|+|+ +.+. +||.+|.+-|+..+.|+.||++|.|..-.... |+ |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 999999999 4777 99999999999999999999999998754432 22 346666544
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.69 E-value=3.1e-16 Score=196.70 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..+.+.+.++.+.|..|||||..+...+.|..+|...|+++..++|. ..+|+..|..|... ...++|+|.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~---~g~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGR---KGAVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCC---CceEEEEec
Confidence 3568888888888889999999999999999999999999999999999998 77899999999542 235899999
Q ss_pred ccccccCccC-------CCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEE
Q 000482 688 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 731 (1464)
Q Consensus 688 Agg~GINL~~-------Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 731 (1464)
.+|+|+++.. .-+||.++.+-|+..+.|+.||++|.|..-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999987 5699999999999999999999999998865543
No 67
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=4.8e-15 Score=171.98 Aligned_cols=313 Identities=18% Similarity=0.309 Sum_probs=216.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH-hC-C---CC--cEEEEEccccH----HHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-R---IS--PHLVVAPLSTL----RNWEREF 354 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~-~~-~---~~--p~LIVvP~sll----~qW~~E~ 354 (1464)
..+.|-|..++-.+ .++..+++-..+|+|||+.-+.-+..+. .. . ++ -.|||+|+--| .+-...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 46889999998776 7889999999999999988665555544 22 1 12 45999997444 3344556
Q ss_pred HHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hhcccCCCc
Q 000482 355 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIK 430 (1464)
Q Consensus 355 ~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~----d~~~L~~i~ 430 (1464)
..+.|++++.++.|...-.+.+..+. ....+|+|.|+..+.. ....+....
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 66678999999999976666554431 1356799999976643 233355445
Q ss_pred eeEEEeccccccCCc--chHHHHHHHhcccccEEe-ecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000482 431 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVL-LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 507 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~--~Sk~~~al~~l~~~~rLL-LTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i 507 (1464)
-.+||+|||.||-.. ...+...|..+..++|-+ .|||-- ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~-----------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT-----------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh-----------------------------------HHH
Confidence 678999999999654 455667777777777754 577730 011
Q ss_pred HHHHHhhhhhhHHHHHhhHhhcCCCceeeeeccc-C--CHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCC
Q 000482 508 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-L--SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 584 (1464)
Q Consensus 508 ~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~-l--s~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~H 584 (1464)
..|.. .-||- .....|... + +|. .+.+
T Consensus 203 ~dL~r----aGLRN-----------pv~V~V~~k~~~~tPS------------------------~L~~----------- 232 (567)
T KOG0345|consen 203 EDLAR----AGLRN-----------PVRVSVKEKSKSATPS------------------------SLAL----------- 232 (567)
T ss_pred HHHHH----hhccC-----------ceeeeecccccccCch------------------------hhcc-----------
Confidence 11110 01110 000000000 0 000 0000
Q ss_pred cccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh--cCCeEEEEEcCCCH
Q 000482 585 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGG 662 (1464)
Q Consensus 585 P~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~--~g~~~~ridGs~s~ 662 (1464)
-| ..+...-|+..|..+|.. ...+|+|||-..-...++....|.. .+.+.+.|+|.++.
T Consensus 233 ~Y-----------------~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 233 EY-----------------LVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred ee-----------------eEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00 012234577788888876 3467999998887777777666643 57889999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEE
Q 000482 663 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 734 (1464)
Q Consensus 663 ~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 734 (1464)
..|..++..|.+..++ +|++|++++.||+++..|.||.||||-+|..+.+|.||..|.|..-...||-+
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999999874444 79999999999999999999999999999999999999999998877666544
No 68
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.68 E-value=1.6e-15 Score=187.12 Aligned_cols=353 Identities=16% Similarity=0.194 Sum_probs=217.3
Q ss_pred CCCCcHHHHHHHHHHHHhhccCC-cEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEc-cccHHHHHHHHHHHCCCC
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 361 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP-~sll~qW~~E~~k~~P~l 361 (1464)
...+|+||..+++.+...+.++. .++|.+.+|+|||.+||+++..|.+.+ .+++|.++- ++++.|=...|..+.|+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 36799999999999988888765 588999999999999999999998764 569999999 688899999999999987
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-------ccCCCceeEE
Q 000482 362 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCM 434 (1464)
Q Consensus 362 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~-------~L~~i~w~~V 434 (1464)
..+.+..... ....+.|.|.||.++..... .+..-.||+|
T Consensus 243 ~~~n~i~~~~---------------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlI 289 (875)
T COG4096 243 TKMNKIEDKK---------------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLI 289 (875)
T ss_pred cceeeeeccc---------------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEE
Confidence 6655432221 11357899999999976432 2333469999
Q ss_pred EeccccccCCcchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000482 435 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 514 (1464)
Q Consensus 435 IvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L 514 (1464)
|||||||- .. ..++.+..+-...+++|||||-..--..-|.+++ ..
T Consensus 290 vIDEaHRg--i~-~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~---g~---------------------------- 335 (875)
T COG4096 290 VIDEAHRG--IY-SEWSSILDYFDAATQGLTATPKETIDRSTYGFFN---GE---------------------------- 335 (875)
T ss_pred Eechhhhh--HH-hhhHHHHHHHHHHHHhhccCcccccccccccccC---CC----------------------------
Confidence 99999983 22 2233444444556778899994421111111111 00
Q ss_pred hhhhHHHHHhhHhh-cCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000482 515 APHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 593 (1464)
Q Consensus 515 ~p~~LRR~K~dv~~-~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~ 593 (1464)
|....-.+..|.. .|-|+....+.+...- +=-.|....++ ..+. .+. +.. +
T Consensus 336 -Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~-~G~~~~~~ser--ek~~----------------g~~------i~~--d 387 (875)
T COG4096 336 -PTYAYSLEEAVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSER--EKLQ----------------GEA------IDE--D 387 (875)
T ss_pred -cceeecHHHHhhccccCCCCceEEeeeccc-cCcCcCccchh--hhhh----------------ccc------cCc--c
Confidence 0000111111221 1222222222222110 00001110000 0000 000 000 0
Q ss_pred CccchhHHHHHHHhhhhHHHHHHHHHHHHHhc---C---ceEEEEecchhhHHHHHHHHhhc-----CCeEEEEEcCCCH
Q 000482 594 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGKVGG 662 (1464)
Q Consensus 594 ~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~---g---~KVLIFSq~~~~LdiL~~~L~~~-----g~~~~ridGs~s~ 662 (1464)
+.......+..-+........+.+.|.....+ | .|.||||....+++.|...|... |--+..|+|...
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~- 466 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE- 466 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch-
Confidence 00000000011111122334455555554444 3 49999999999999999998643 333567888764
Q ss_pred HHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcC-------CCC-cEEEEEE
Q 000482 663 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG-------QTN-KVMIFRL 734 (1464)
Q Consensus 663 ~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiG-------Q~k-~V~VyrL 734 (1464)
+-+..|+.|-. +...-.+.+|...+..|||.+.+-.++|+-.--+-..+.|.+||+-|+. |.| ...||.+
T Consensus 467 -~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf 544 (875)
T COG4096 467 -QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDF 544 (875)
T ss_pred -hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEh
Confidence 44678899976 3333357899999999999999999999999999999999999999963 434 4667766
Q ss_pred E
Q 000482 735 I 735 (1464)
Q Consensus 735 v 735 (1464)
+
T Consensus 545 ~ 545 (875)
T COG4096 545 V 545 (875)
T ss_pred h
Confidence 5
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.1e-14 Score=182.27 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|...|.+++..+...+..|||||..+...+.|...|...|+++..|+|... +|+..+..|.... + .++|+|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g--~VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-G--RITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-C--cEEEEcc
Confidence 456899999999988878899999999999999999999999999999999864 5556666664322 2 3799999
Q ss_pred ccccccCcc---CCC-----EEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHH
Q 000482 688 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 747 (1464)
Q Consensus 688 Agg~GINL~---~Ad-----~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~ 747 (1464)
.+|.|+|+. .+. +||.||.+-|...|.|++||++|.|..-.+. .|+ |.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 999999998 444 9999999999999999999999999764443 223 335555544
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.67 E-value=6.7e-15 Score=186.68 Aligned_cols=322 Identities=16% Similarity=0.203 Sum_probs=193.6
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHH----------HHH--h-C-CCCcEEEEEcc-ccHHH
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA----------SLF--G-E-RISPHLVVAPL-STLRN 349 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~----------~l~--~-~-~~~p~LIVvP~-sll~q 349 (1464)
...|++.|...=..+...+..++.+|+..++|+|||.|.=-++. .+. . . ..++++|++|. .+..|
T Consensus 158 ~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 158 KIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred cccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHH
Confidence 36788888888777778889999999999999999987422221 111 1 1 23489999996 44567
Q ss_pred HHHHHHHHC-----CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc
Q 000482 350 WEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA 424 (1464)
Q Consensus 350 W~~E~~k~~-----P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~ 424 (1464)
...++.... ++..+.+.+|...... ... .....+++|.|..... .
T Consensus 238 i~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t-------------------------~~k~~~Ilv~T~~L~l---~ 287 (675)
T PHA02653 238 HSITLLKSLGFDEIDGSPISLKYGSIPDEL--INT-------------------------NPKPYGLVFSTHKLTL---N 287 (675)
T ss_pred HHHHHHHHhCccccCCceEEEEECCcchHH--hhc-------------------------ccCCCCEEEEeCcccc---c
Confidence 777776432 3455666666654210 000 0114578888754311 1
Q ss_pred ccCCCceeEEEeccccccCCcchHHHHHHHhccc--ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh
Q 000482 425 SLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 502 (1464)
Q Consensus 425 ~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~ 502 (1464)
.| -...+|||||||..-...-.+...++.+.. ...+++|||.- .....+ ..|+..
T Consensus 288 ~L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~~l---~~~~~~----------------- 344 (675)
T PHA02653 288 KL--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRDRI---KEFFPN----------------- 344 (675)
T ss_pred cc--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHHHH---HHHhcC-----------------
Confidence 22 246789999999976554444444444322 25799999961 112111 112110
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Q 000482 503 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 582 (1464)
Q Consensus 503 ~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c 582 (1464)
+..+. .. ...+.|.....+.....+.+...|-.
T Consensus 345 -------------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~------------------------------ 377 (675)
T PHA02653 345 -------------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE------------------------------ 377 (675)
T ss_pred -------------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhhH------------------------------
Confidence 00000 00 00111222221111111111100000
Q ss_pred CCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHH-HhcCceEEEEecchhhHHHHHHHHhhc--CCeEEEEEcC
Q 000482 583 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGK 659 (1464)
Q Consensus 583 ~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l-~~~g~KVLIFSq~~~~LdiL~~~L~~~--g~~~~ridGs 659 (1464)
..|..++ ..+... ...+.++|||+......+.+...|... ++.+..++|+
T Consensus 378 --------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~ 430 (675)
T PHA02653 378 --------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGK 430 (675)
T ss_pred --------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCC
Confidence 0011111 112211 124568999999999999999999876 7999999999
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEec----CC--------CChhcHHHHHHhhhhcCCCC
Q 000482 660 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SD--------WNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 660 ~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D----~d--------WNP~~d~QAigRahRiGQ~k 727 (1464)
++.. ++++++|.. +++..+|++|..++.||+++.+++||.++ |. .+...+.||.||++|. +
T Consensus 431 Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~ 503 (675)
T PHA02653 431 VPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---S 503 (675)
T ss_pred cCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---C
Confidence 9864 567778742 24456899999999999999999999887 21 2566788999998887 4
Q ss_pred cEEEEEEEeCCCH
Q 000482 728 KVMIFRLITRGSI 740 (1464)
Q Consensus 728 ~V~VyrLvt~~Tv 740 (1464)
+-.+|+|+++...
T Consensus 504 ~G~c~rLyt~~~~ 516 (675)
T PHA02653 504 PGTYVYFYDLDLL 516 (675)
T ss_pred CCeEEEEECHHHh
Confidence 6788899988754
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.67 E-value=5.7e-15 Score=181.42 Aligned_cols=305 Identities=19% Similarity=0.204 Sum_probs=211.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
..+||-|.+++..+ ..+.++|.-..||.||++..- |-.+.. .|.+|||.|+ +++..-.+.+.... +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 35888999998877 677999999999999998642 222222 4599999995 88888888887753 5555
Q ss_pred EEEcC--hhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCceeEEEecccc
Q 000482 365 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 365 vy~G~--~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAH 440 (1464)
.+.+. .+++..+... ......+++..++|.+... ...|...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 55443 2333222221 1124678999999998765 445667888999999999
Q ss_pred ccCCc-------chHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000482 441 RLKNK-------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 513 (1464)
Q Consensus 441 rlKN~-------~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~ 513 (1464)
.+-.. ...+......+....++.||||--.--..|+...|+.-.+..|...
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---------------------- 199 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS---------------------- 199 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----------------------
Confidence 98543 3455555555666678999888533333333333333222111000
Q ss_pred hhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000482 514 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 593 (1464)
Q Consensus 514 L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~ 593 (1464)
+ .+. |+....+..
T Consensus 200 --------------------------f--------------------------dRp---Ni~~~v~~~------------ 212 (590)
T COG0514 200 --------------------------F--------------------------DRP---NLALKVVEK------------ 212 (590)
T ss_pred --------------------------C--------------------------CCc---hhhhhhhhc------------
Confidence 0 000 111000000
Q ss_pred CccchhHHHHHHHhhhhHHHHHHHHHH-HHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHH
Q 000482 594 DIEDTNESFKQLLESSGKLQLLDKMMV-KLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 672 (1464)
Q Consensus 594 ~~~~~~~~~~~li~~SgKl~~L~kLL~-~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~F 672 (1464)
.+++.+++ .|. .....+...||||......+.|..+|...|++...++|+++.++|+..-++|
T Consensus 213 --------------~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f 276 (590)
T COG0514 213 --------------GEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAF 276 (590)
T ss_pred --------------ccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHH
Confidence 01111111 111 1223345689999999999999999999999999999999999999999999
Q ss_pred hccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 673 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 673 n~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
+.++.. ++++|.|.|.|||=++...||+||.|-+...|.|-+|||+|-|....+.++
T Consensus 277 ~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 277 LNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred hcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 975554 899999999999999999999999999999999999999999988766543
No 72
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.66 E-value=2.9e-15 Score=175.04 Aligned_cols=307 Identities=19% Similarity=0.297 Sum_probs=205.0
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH-hC----CCC-cEEEEEccccH-HHHH---HHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE----RIS-PHLVVAPLSTL-RNWE---REFAT 356 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~-~~----~~~-p~LIVvP~sll-~qW~---~E~~k 356 (1464)
+|.+-|...+.-+ ..+..++.+.-+|+|||+.-+.-+..+. .. +.+ -+|||||.--+ .|-. +++.+
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 5778887776555 6778999999999999987544333332 22 122 68999997554 4444 44556
Q ss_pred HCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC---CceeE
Q 000482 357 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQC 433 (1464)
Q Consensus 357 ~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~---i~w~~ 433 (1464)
+.|...+.+..|...-+...... . ...+++|.|+..+......-.. ..-.+
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 66777777777766544322221 1 2678999999988654322211 12368
Q ss_pred EEeccccccCCc--chHHHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000482 434 MIVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 510 (1464)
Q Consensus 434 VIvDEAHrlKN~--~Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 510 (1464)
+|+|||.||... .-.+-+.+..+.. ...+|.|||- ...+..|
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~-----------------------------------~~kV~~l 278 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ-----------------------------------PSKVKDL 278 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC-----------------------------------cHHHHHH
Confidence 999999998543 2233444444442 2346777772 0111111
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 590 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~ 590 (1464)
... .|+| .|-.++.
T Consensus 279 ~~~----~L~~--------------------------------------------------------------d~~~v~~ 292 (543)
T KOG0342|consen 279 ARG----ALKR--------------------------------------------------------------DPVFVNV 292 (543)
T ss_pred HHH----hhcC--------------------------------------------------------------CceEeec
Confidence 110 0000 0000111
Q ss_pred CCCCccchhHHHHH---HHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHH
Q 000482 591 VEPDIEDTNESFKQ---LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 667 (1464)
Q Consensus 591 ~e~~~~~~~~~~~~---li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~ 667 (1464)
.......+.+.+.+ +.....++.+|..+|++...+ .|||||+....+...+.+.|+...+++..|+|..++..|..
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred CCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 11111111111111 111234567788888876654 89999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCc
Q 000482 668 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 728 (1464)
Q Consensus 668 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~ 728 (1464)
....|.+..++ +|++|+++++|+|.+.+|.||-||+|-+|.+|++|+||..|-|-+-.
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 99999988887 89999999999999999999999999999999999999999776543
No 73
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.66 E-value=3.3e-15 Score=200.10 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=84.1
Q ss_pred cCceEEEEecchhhHHHHHHHHhhcC---------------------------------CeEEEEEcCCCHHHHHHHHHH
Q 000482 625 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 625 ~g~KVLIFSq~~~~LdiL~~~L~~~g---------------------------------~~~~ridGs~s~~eRq~~Id~ 671 (1464)
.+.++|||++.....+.|...|+... +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 47899999999999999888886431 114567899999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhc
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 723 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 723 (1464)
|.++. ..+|++|.++..|||+..+|.||+|+++.+...++|++||++|.
T Consensus 323 fK~G~---LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGE---LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCC---ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 98644 45899999999999999999999999999999999999999985
No 74
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=2.9e-15 Score=178.10 Aligned_cols=309 Identities=19% Similarity=0.269 Sum_probs=205.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCC-----------CcEEEEEcc-ccHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-----------SPHLVVAPL-STLRNWER 352 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~-----------~p~LIVvP~-sll~qW~~ 352 (1464)
..+.|+|..++.-+ ..|++.+.+..+|+|||..- |-++.+++..+. ...||++|+ .+..|-..
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 35778998887655 78899999999999999875 345556655421 257999996 67788999
Q ss_pred HHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh----ccc
Q 000482 353 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----ASL 426 (1464)
Q Consensus 353 E~~k~~--P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~----~~L 426 (1464)
|..++. ..+++++.+|..+.+...+. ....+|++++|...+..-. -.|
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~--------------------------~~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRF--------------------------IKRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhh--------------------------hccCccEEEecCchhhhhhhcceeeh
Confidence 998886 45667777777555544332 1357899999998775421 123
Q ss_pred CCCceeEEEeccccccCCc---chHHHHHHHhc-----ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHH
Q 000482 427 KPIKWQCMIVDEGHRLKNK---DSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF 498 (1464)
Q Consensus 427 ~~i~w~~VIvDEAHrlKN~---~Sk~~~al~~l-----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f 498 (1464)
..+ .++|+|||.++-.. .-.+.+.+... ....-++.|||- +
T Consensus 225 ~~~--k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtf--------------------p--------- 273 (482)
T KOG0335|consen 225 DNC--KFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATF--------------------P--------- 273 (482)
T ss_pred hhC--cEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccC--------------------C---------
Confidence 333 48999999997542 11222222222 122335555551 0
Q ss_pred hhhhhHHHHHHHHHhhhhhhHH-HHH---hhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 000482 499 KDINQEEQISRLHRMLAPHLLR-RVK---KDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 574 (1464)
Q Consensus 499 ~~~~~~~~i~~L~~~L~p~~LR-R~K---~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~ni 574 (1464)
..+++ +...|+.- .+. .-+...-......+++|
T Consensus 274 ------~~iq~---l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V---------------------------------- 310 (482)
T KOG0335|consen 274 ------KEIQR---LAADFLKDNYIFLAVGRVGSTSENITQKILFV---------------------------------- 310 (482)
T ss_pred ------hhhhh---hHHHHhhccceEEEEeeeccccccceeEeeee----------------------------------
Confidence 01111 00000000 000 00000001111111111
Q ss_pred HHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHH---hc----CceEEEEecchhhHHHHHHHHh
Q 000482 575 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQ----GHRVLIYSQFQHMLDLLEDYLT 647 (1464)
Q Consensus 575 l~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~---~~----g~KVLIFSq~~~~LdiL~~~L~ 647 (1464)
....|...|.++|.... .+ -++++||+...++++.|..+|.
T Consensus 311 --------------------------------~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 311 --------------------------------NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred --------------------------------cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 12233334444443322 11 2589999999999999999999
Q ss_pred hcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC
Q 000482 648 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 648 ~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 727 (1464)
..|+++.-|+|..++.+|.++++.|...... +||+|..++.|||++.+.+||+||.+-+-..|+.|+||.+|.|+.-
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999875554 8999999999999999999999999999999999999999999987
Q ss_pred cEEEEE
Q 000482 728 KVMIFR 733 (1464)
Q Consensus 728 ~V~Vyr 733 (1464)
..+.|.
T Consensus 436 ~atsf~ 441 (482)
T KOG0335|consen 436 RATSFF 441 (482)
T ss_pred eeEEEe
Confidence 665543
No 75
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.65 E-value=6.3e-15 Score=172.52 Aligned_cols=338 Identities=17% Similarity=0.238 Sum_probs=209.6
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHh---------CCCC-cEEEEEccccH-HHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG---------ERIS-PHLVVAPLSTL-RNWEREF 354 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~---------~~~~-p~LIVvP~sll-~qW~~E~ 354 (1464)
...|.|..++--+ ..+++.|...|+|+|||..- |-++.++.. ...+ ..+|++|+--| .|-..|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 4667888887644 67899999999999999542 222222211 1123 56899998555 5677777
Q ss_pred HHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCc
Q 000482 355 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIK 430 (1464)
Q Consensus 355 ~k~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~ 430 (1464)
.+|+- +++++...|...--+. .| +-...++++|.|+.-+..-. ..|-.-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 77762 3677777765432111 11 11246789999998775422 2222335
Q ss_pred eeEEEeccccccCCc--chHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHH
Q 000482 431 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 508 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~--~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~ 508 (1464)
..+||+|||.++-.. .-.....|..+.+ .|- .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~mPs-----------sn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQMPS-----------SNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhCCc-----------ccc-----------CC----Cccch----------hhHH
Confidence 678999999987432 2222222222211 110 00 11111 1111
Q ss_pred HHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000482 509 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 588 (1464)
Q Consensus 509 ~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~ 588 (1464)
.+.+.+. - .| --.......+.|++.-..+-+.++. .|..+
T Consensus 441 ~~~~~~~---~--~k-------~yrqT~mftatm~p~verlar~ylr----------------------------~pv~v 480 (673)
T KOG0333|consen 441 RVRKNFS---S--SK-------KYRQTVMFTATMPPAVERLARSYLR----------------------------RPVVV 480 (673)
T ss_pred HHHhhcc---c--cc-------ceeEEEEEecCCChHHHHHHHHHhh----------------------------CCeEE
Confidence 1111110 0 00 0011223445555543333333222 12111
Q ss_pred c-CCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHH
Q 000482 589 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 667 (1464)
Q Consensus 589 ~-~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~ 667 (1464)
. +.........+..-.++..+.|...|.++|... ....+|||.+.....|.|++.|...||++++++|+-++++|..
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111111111111112344567777777777764 3579999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 668 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 668 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
++..|.++..+ +|++|.++|.||+++.+++||.||..-+-..|.+||||.+|-|+.-.+.- |+|.
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS--flt~ 623 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTP 623 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE--Eecc
Confidence 99999986666 89999999999999999999999999999999999999999998866543 4444
No 76
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=172.09 Aligned_cols=320 Identities=18% Similarity=0.304 Sum_probs=210.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHh--------CCCCcE-EEEEccccH-HHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--------ERISPH-LVVAPLSTL-RNWEREFA 355 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~--------~~~~p~-LIVvP~sll-~qW~~E~~ 355 (1464)
...|.|++|+--+ ..|+..|=..-+|+|||++. +-++...+. .+.+|+ |||||..-| .|-..-+.
T Consensus 192 ~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 4678899997654 56777777778999999863 222222221 234565 999997544 34333333
Q ss_pred HH--------CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcc
Q 000482 356 TW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SAS 425 (1464)
Q Consensus 356 k~--------~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~ 425 (1464)
.+ .|.++.....|.-.-+..+... ....|+++.|...+..- ...
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v--------------------------~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV--------------------------RRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH--------------------------hcCeeEEEcCcchHHHHHHHhh
Confidence 33 2777777777777666654332 23568999998776432 111
Q ss_pred cCCCceeEEEeccccccCCc--chHHHHHHHhcccc-cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh
Q 000482 426 LKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 502 (1464)
Q Consensus 426 L~~i~w~~VIvDEAHrlKN~--~Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~ 502 (1464)
+.---..++.+|||.|+-.. .-.+...+.-|++. ..||.|||- |.. .+.|..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM----------------P~K-------IQ~FAk-- 376 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM----------------PKK-------IQNFAK-- 376 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc----------------cHH-------HHHHHH--
Confidence 11112457999999998542 22333333444443 357788883 100 000000
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Q 000482 503 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 582 (1464)
Q Consensus 503 ~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c 582 (1464)
..+++| .+|.|. ......++++.+
T Consensus 377 --------SALVKP-------------------vtvNVG------------------------RAGAAsldViQe----- 400 (610)
T KOG0341|consen 377 --------SALVKP-------------------VTVNVG------------------------RAGAASLDVIQE----- 400 (610)
T ss_pred --------hhcccc-------------------eEEecc------------------------cccccchhHHHH-----
Confidence 011111 112221 111112222222
Q ss_pred CCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCH
Q 000482 583 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 662 (1464)
Q Consensus 583 ~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~ 662 (1464)
-..+..-+|+..|.+.|.+ ..-+||||+.-..-.|-|.+||-.+|+..+.|+|+-.+
T Consensus 401 --------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 401 --------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQ 457 (610)
T ss_pred --------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcch
Confidence 1234456677777766665 56699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHH
Q 000482 663 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 742 (1464)
Q Consensus 663 ~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE 742 (1464)
++|..+|+.|..+..+ +|++|.+++-|++++...+||+||.+-.-.+|..||||.+|-|.+--.+ .|+.+++-+.
T Consensus 458 edR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~es 532 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEES 532 (610)
T ss_pred hHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHH
Confidence 9999999999986665 8999999999999999999999999999999999999999998775333 4566666544
Q ss_pred HHH
Q 000482 743 RMM 745 (1464)
Q Consensus 743 ~I~ 745 (1464)
-++
T Consensus 533 vLl 535 (610)
T KOG0341|consen 533 VLL 535 (610)
T ss_pred HHH
Confidence 443
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.64 E-value=3e-14 Score=170.72 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=71.6
Q ss_pred cCceEEEEecchhhHHHHHHHHhhcC--CeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000482 625 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 702 (1464)
Q Consensus 625 ~g~KVLIFSq~~~~LdiL~~~L~~~g--~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 702 (1464)
.+.|+|||++....++.+...|+..| +.+..++|.++..+|.++. ...+|++|.+++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887653 2348999999999999986 4666
Q ss_pred EecCCCChhcHHHHHHhhh
Q 000482 703 IYDSDWNPHADLQAMARAH 721 (1464)
Q Consensus 703 i~D~dWNP~~d~QAigRah 721 (1464)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 567889999999974
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=99.63 E-value=3.5e-14 Score=189.96 Aligned_cols=294 Identities=16% Similarity=0.199 Sum_probs=184.2
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC--C
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 361 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~--l 361 (1464)
|..++++|..++..+ ..+.++++..+||+|||..++.++..+. .....+|||+|+ .++.||...|..++.. +
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 457899999887655 5788999999999999975444443332 233489999996 6778999999998754 3
Q ss_pred eEEEEEcChh----HHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEec
Q 000482 362 NVVMYVGTSQ----ARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 437 (1464)
Q Consensus 362 ~vvvy~G~~~----~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvD 437 (1464)
.+.+..|... .+..... ......++|+|+|++.+......+....+++||||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~------------------------~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvD 208 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLE------------------------RLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVD 208 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHH------------------------HHhcCCCCEEEECHHHHHHHHHhccccccCEEEEE
Confidence 4444443321 1111110 00124689999999999887666666679999999
Q ss_pred cccccCCcc--------------hHHHHHHHhcc-------------------------cccEEeecccccCCCHHHHHH
Q 000482 438 EGHRLKNKD--------------SKLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDELFM 478 (1464)
Q Consensus 438 EAHrlKN~~--------------Sk~~~al~~l~-------------------------~~~rLLLTGTPlqNnl~EL~s 478 (1464)
|||++-... ..+..++..++ ....++.|||.-...+..
T Consensus 209 EaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--- 285 (1176)
T PRK09401 209 DVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--- 285 (1176)
T ss_pred ChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---
Confidence 999985311 11111222211 122344455531110000
Q ss_pred HHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHH
Q 000482 479 LMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNY 558 (1464)
Q Consensus 479 LL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~ 558 (1464)
.++..++.
T Consensus 286 ---------------------------------------------------------------------~l~~~ll~--- 293 (1176)
T PRK09401 286 ---------------------------------------------------------------------KLFRELLG--- 293 (1176)
T ss_pred ---------------------------------------------------------------------HHhhccce---
Confidence 00000000
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhh
Q 000482 559 QILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 638 (1464)
Q Consensus 559 ~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ 638 (1464)
+. -+..... ++.+ .|-|.. ...|...|.+++..+ |..+|||++....
T Consensus 294 --~~-v~~~~~~-------~rnI-~~~yi~-------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~~ 340 (1176)
T PRK09401 294 --FE-VGSPVFY-------LRNI-VDSYIV-------------------DEDSVEKLVELVKRL---GDGGLIFVPSDKG 340 (1176)
T ss_pred --EE-ecCcccc-------cCCc-eEEEEE-------------------cccHHHHHHHHHHhc---CCCEEEEEecccC
Confidence 00 0000000 0000 011110 013455566666544 5689999998777
Q ss_pred ---HHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEee----ccccccccCccC-CCEEEEecCCC--
Q 000482 639 ---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW-- 708 (1464)
Q Consensus 639 ---LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlS----TrAgg~GINL~~-Ad~VIi~D~dW-- 708 (1464)
++.|.++|...|+++..++|++ .+.+++|.++... +|++ |..+++|||++. ...||+|+.|-
T Consensus 341 ~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 341 KEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred hHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 9999999999999999999998 2356999875544 6777 689999999998 89999999987
Q ss_pred ----ChhcHHHHHHhhhhc
Q 000482 709 ----NPHADLQAMARAHRL 723 (1464)
Q Consensus 709 ----NP~~d~QAigRahRi 723 (1464)
.......++||..++
T Consensus 413 ~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 413 FSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EeccccccCHHHHHHHHhh
Confidence 566778888888754
No 79
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=6.4e-14 Score=164.35 Aligned_cols=118 Identities=17% Similarity=0.378 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHh--cCceEEEEecchhhHHHHHHHH----hh------------------cCCeEEEEEcCCCHHHHHH
Q 000482 612 LQLLDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYL----TF------------------KKWQYERIDGKVGGAERQI 667 (1464)
Q Consensus 612 l~~L~kLL~~l~~--~g~KVLIFSq~~~~LdiL~~~L----~~------------------~g~~~~ridGs~s~~eRq~ 667 (1464)
+..|..+|....+ ...|+|||-.-.++.+.=.+.| .. .+.++.|++|+|++++|..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 3345555554432 2458899977766655433333 21 2456999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 668 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 668 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
+...|..... ++|++|++++.||+|+.+..||-||+++.+..++.|+||.-|+|-+-.-..|
T Consensus 489 ~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 489 VFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred HHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE
Confidence 9999976544 4899999999999999999999999999999999999999999988765544
No 80
>COG4889 Predicted helicase [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=175.06 Aligned_cols=394 Identities=18% Similarity=0.187 Sum_probs=204.6
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC-CCCe
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMN 362 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~-P~l~ 362 (1464)
..+|||||.++++-....+..+.+|=|.+.+|+|||++++-+...+.. ..+|.+||. ++|.|-.+|...-. -+++
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccce
Confidence 468999999999998888888999999999999999999988887755 489999995 88888655543322 1233
Q ss_pred -EEEEEcChhHHH--HHHHhhhcCCCCchh--hhccccCccccccccccccccEEEecHHHHHhh--hcccCCCceeEEE
Q 000482 363 -VVMYVGTSQARN--IIREYEFYFPKNPKK--VKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 435 (1464)
Q Consensus 363 -vvvy~G~~~~R~--~i~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VI 435 (1464)
+.++..++-+|. .|.-+++-+|..... +... ........+--||++||+.+..- .....--.|++||
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~------~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE------MEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHHH------HHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEE
Confidence 334444444433 233333333332211 0000 01112234556999999998653 3334445799999
Q ss_pred eccccccCC------cchHHHHH--HHhcccccEEeecccccC------CCHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 000482 436 VDEGHRLKN------KDSKLFSS--LKQYSTRHRVLLTGTPLQ------NNLDELFMLMHFLDAGKFGSLEEFQEEFKDI 501 (1464)
Q Consensus 436 vDEAHrlKN------~~Sk~~~a--l~~l~~~~rLLLTGTPlq------Nnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~ 501 (1464)
+|||||--+ ..|.+.+. -..+++..||.+||||-- .+..+--.. ...+.+...|-+.|..+
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~-----l~SMDDe~~fGeef~rl 384 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE-----LSSMDDELTFGEEFHRL 384 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce-----eeccchhhhhchhhhcc
Confidence 999999643 11222111 123456789999999911 000000000 00112223333333332
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHhhHhhc-CCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCch------hhHHHH
Q 000482 502 NQEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQ------ISLINV 574 (1464)
Q Consensus 502 ~~~~~i~~L~~~L~p~~LRR~K~dv~~~-LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~------~~l~ni 574 (1464)
.-.+. |... |...+..++.|.---.+..+ .....+.+.. ..+...
T Consensus 385 ~FgeA-------------------v~rdlLTDYKVmvlaVd~~~i~~~~---------~~~~~~~~~~L~~dd~~kIvG~ 436 (1518)
T COG4889 385 GFGEA-------------------VERDLLTDYKVMVLAVDKEVIAGVL---------QSVLSGPSKGLALDDVSKIVGC 436 (1518)
T ss_pred cHHHH-------------------HHhhhhccceEEEEEechhhhhhhh---------hhhccCcccccchhhhhhhhhh
Confidence 22211 1111 33444455544422111111 1111111000 011111
Q ss_pred HHHHHHHhC--CcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCe
Q 000482 575 VMELRKLCC--HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ 652 (1464)
Q Consensus 575 l~~LRk~c~--HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~ 652 (1464)
-.-|.+-.. .+..-......+....-.+..-+..|.++.-...-+.+.- ..++..+ .....+.
T Consensus 437 wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y--------------~~Elk~d-~~nL~iS 501 (1518)
T COG4889 437 WNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAY--------------DEELKKD-FKNLKIS 501 (1518)
T ss_pred hhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHHHHhc-CCCceEE
Confidence 111111110 0000000000111111222222333333322111111100 0111122 2223456
Q ss_pred EEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC-cEEE
Q 000482 653 YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMI 731 (1464)
Q Consensus 653 ~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k-~V~V 731 (1464)
..-+||.|...+|......-|........+|-..||+++|+++++.|.||||||--.--..+|+.||+-|..-.| --+|
T Consensus 502 i~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYI 581 (1518)
T COG4889 502 IDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYI 581 (1518)
T ss_pred eecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceE
Confidence 677999999999966655544433344447888999999999999999999999877777789999999976554 3344
Q ss_pred EEEE
Q 000482 732 FRLI 735 (1464)
Q Consensus 732 yrLv 735 (1464)
...|
T Consensus 582 ILPI 585 (1518)
T COG4889 582 ILPI 585 (1518)
T ss_pred EEEe
Confidence 4333
No 81
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.61 E-value=1e-13 Score=162.99 Aligned_cols=325 Identities=16% Similarity=0.249 Sum_probs=221.5
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCC-----cEEEEEccccH-HHHHHHHHHHC-
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPLSTL-RNWEREFATWA- 358 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~-----p~LIVvP~sll-~qW~~E~~k~~- 358 (1464)
.+..-|...+-.. -.|..+|=|.-+|+|||+.- +-+|..|+...++ -.|||.|+.-| .|--.-+.+..
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4667888877544 57888889999999999874 4566677665433 68999997444 45444444332
Q ss_pred -CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---cccCCCceeEE
Q 000482 359 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCM 434 (1464)
Q Consensus 359 -P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~---~~L~~i~w~~V 434 (1464)
.++..-.+.|..+...... .....+|+|+|+..+.... ..|..-...++
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 2566666777765432111 1246789999999997653 34566678899
Q ss_pred EeccccccCCcc--hHHHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000482 435 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 511 (1464)
Q Consensus 435 IvDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 511 (1464)
|+|||.|+.... ..+-..+..+.. +..||.|||+ .+++.+|.-|
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATq-t~svkdLaRL-------------------------------- 266 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQ-TKSVKDLARL-------------------------------- 266 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeeccc-chhHHHHHHh--------------------------------
Confidence 999999986533 344455555543 4569999998 2222222211
Q ss_pred HhhhhhhHHHHHhhHhhcCCCceeeeec---ccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000482 512 RMLAPHLLRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 588 (1464)
Q Consensus 512 ~~L~p~~LRR~K~dv~~~LPpk~e~iv~---v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~ 588 (1464)
.|.......+. +.-+|. .|++. |+
T Consensus 267 -----------------sL~dP~~vsvhe~a~~atP~-------------------------------~L~Q~----y~- 293 (758)
T KOG0343|consen 267 -----------------SLKDPVYVSVHENAVAATPS-------------------------------NLQQS----YV- 293 (758)
T ss_pred -----------------hcCCCcEEEEeccccccChh-------------------------------hhhhe----EE-
Confidence 11111111111 000110 01110 11
Q ss_pred cCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh--cCCeEEEEEcCCCHHHHH
Q 000482 589 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 666 (1464)
Q Consensus 589 ~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~--~g~~~~ridGs~s~~eRq 666 (1464)
++....|+..|...|.... ..|.|||-..-.....+...+.. -|++...++|.+++..|.
T Consensus 294 ----------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 294 ----------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred ----------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 1123447788888887754 45899998888888877776653 399999999999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 000482 667 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 746 (1464)
Q Consensus 667 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~ 746 (1464)
.+..+|... +-++|.+|..++.||+++.+|.||-+|.|-+...|++|.||..|.+..-...+|- -.+-+|.|+.
T Consensus 356 ev~~~F~~~---~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVRK---RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLK 429 (758)
T ss_pred HHHHHHHHh---cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHH
Confidence 999999763 3358999999999999999999999999999999999999999998777665543 3455788988
Q ss_pred HHHHHH
Q 000482 747 MTKKKM 752 (1464)
Q Consensus 747 ~a~~K~ 752 (1464)
++++|.
T Consensus 430 ~Lq~k~ 435 (758)
T KOG0343|consen 430 KLQKKK 435 (758)
T ss_pred HHHHcC
Confidence 888775
No 82
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=7.7e-14 Score=157.34 Aligned_cols=308 Identities=17% Similarity=0.205 Sum_probs=204.9
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhCCCC-cEEEEEccccH-HHHHHHHHHHC--CCC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 361 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~l~~~~~~-p~LIVvP~sll-~qW~~E~~k~~--P~l 361 (1464)
+..|-|..++--+ -.|..||=+.-+|+|||.. ++-++..|.....+ -.||++|..-+ .|-...|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 4667888887665 6789999999999999976 45555555555555 66999997555 44444454333 357
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-ccC-----CCceeEEE
Q 000482 362 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-SLK-----PIKWQCMI 435 (1464)
Q Consensus 362 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~-~L~-----~i~w~~VI 435 (1464)
++.+++|..+--..-. .-..+.|||++|.+.+..... .+. .-+-.++|
T Consensus 105 K~~vivGG~d~i~qa~--------------------------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAA--------------------------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHhhhhh--------------------------hcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 7888888765322111 112467999999987743211 111 12346799
Q ss_pred eccccccCCcch--HHHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000482 436 VDEGHRLKNKDS--KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 512 (1464)
Q Consensus 436 vDEAHrlKN~~S--k~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 512 (1464)
+|||.++.+..- .+......+.. +-.+++|||- .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 999999865421 11112222222 2457777772 222111110
Q ss_pred hhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000482 513 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 592 (1464)
Q Consensus 513 ~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e 592 (1464)
.|-..- .+|......
T Consensus 204 -----------------~~i~k~------------------------------------------------~a~~~e~~~ 218 (442)
T KOG0340|consen 204 -----------------CPITKS------------------------------------------------IAFELEVID 218 (442)
T ss_pred -----------------CCcccc------------------------------------------------cceEEeccC
Confidence 000000 000000000
Q ss_pred CCccchh-HHHHHHHhhhhHHHHHHHHHHHHHh-cCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHH
Q 000482 593 PDIEDTN-ESFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 670 (1464)
Q Consensus 593 ~~~~~~~-~~~~~li~~SgKl~~L~kLL~~l~~-~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id 670 (1464)
+...... ..--.++...+|-..|..+|+...+ ....++||.|.+....+|...|+..++....+++.+++.+|-.++-
T Consensus 219 ~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 219 GVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred CCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHH
Confidence 0000000 0001122345677888899998877 5678999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC
Q 000482 671 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 671 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 727 (1464)
+|.+.. ..+|++|++++.|+++++++.||+||.|-.|..|++|.||..|-|..-
T Consensus 299 rFrs~~---~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 299 RFRSNA---ARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred HHhhcC---ccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCc
Confidence 997644 448999999999999999999999999999999999999999988764
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.60 E-value=4.6e-14 Score=183.63 Aligned_cols=331 Identities=19% Similarity=0.223 Sum_probs=221.1
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEccc-cHHHHHHHHHHHC---C-C
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLS-TLRNWEREFATWA---P-Q 360 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~p~LIVvP~s-ll~qW~~E~~k~~---P-~ 360 (1464)
.|+.||.++++.+ .+|+++|+...||+|||... +.++..+.......+|+|-|.. +...-...|.+|. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999877 78899999999999999986 4555666666666999999964 4556777777776 4 5
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hcccCCCceeEE
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPIKWQCM 434 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d------~~~L~~i~w~~V 434 (1464)
+++..|+|+........ + ...+.+|++|+|+|+... .-.+..-++.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~---~-----------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRA---I-----------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHH---H-----------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 67888888765432210 0 124789999999999652 111111247899
Q ss_pred EeccccccCCc-chHHHHHHHhcc--------cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHH
Q 000482 435 IVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 505 (1464)
Q Consensus 435 IvDEAHrlKN~-~Sk~~~al~~l~--------~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~ 505 (1464)
||||+|-.++. .|.+.-.++.+. ....++.|||- ++..+|.+.+......
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~- 258 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE- 258 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-
Confidence 99999999874 344444444432 23458888883 3333333332211000
Q ss_pred HHHHHHHhhhhhhHHHHHhhHhhc-CCCceeeee-cccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000482 506 QISRLHRMLAPHLLRRVKKDVMKE-LPPKKELIL-RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 583 (1464)
Q Consensus 506 ~i~~L~~~L~p~~LRR~K~dv~~~-LPpk~e~iv-~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~ 583 (1464)
..+..+ .|....+.+ +-+........
T Consensus 259 ------------------~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 259 ------------------VPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred ------------------eeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 001111 111111111 11100000000
Q ss_pred CcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHH----HHHhhcC----CeEEE
Q 000482 584 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 655 (1464)
Q Consensus 584 HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~----~~L~~~g----~~~~r 655 (1464)
..-.+...+..++..+...|-++|+|+.....+..+. ..+...+ .....
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0123556667777788889999999999999998886 3333344 56788
Q ss_pred EEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhcHHHHHHhhhhcCCCCcEEEEEE
Q 000482 656 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 734 (1464)
Q Consensus 656 idGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~V~VyrL 734 (1464)
+.|++...+|..+...|..++. .++++|.|+-.||++.+.+.||.+--+- .-..+.|+.||++|-||.- .++..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~---~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGEL---LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCc---cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEE
Confidence 8999999999999999987544 4899999999999999999999999988 7799999999999999543 33333
Q ss_pred EeCCCHHHHHHHHH
Q 000482 735 ITRGSIEERMMQMT 748 (1464)
Q Consensus 735 vt~~TvEE~I~~~a 748 (1464)
.-.+-++..++..-
T Consensus 419 ~~~~~~d~yy~~~p 432 (851)
T COG1205 419 LRSDPLDSYYLRHP 432 (851)
T ss_pred eCCCccchhhhhCc
Confidence 33677777765443
No 84
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.60 E-value=3.2e-15 Score=151.82 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecccc
Q 000482 610 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 689 (1464)
Q Consensus 610 gKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAg 689 (1464)
.|+..+..++.+..+.+.++|||+.....++.+.++|...+.++..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888999887767899999999999999999999988999999999999999999999998755 4589999999
Q ss_pred ccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 690 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 690 g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
++|+|++.+++||+++++||+..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877764
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.60 E-value=2.5e-13 Score=174.69 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=103.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
..|.++|.++++.+...+ .+...+|...+|+|||...+..+......+ +.+||++|. .+..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 479999999998885543 456789999999999999887766655542 489999996 67799999999887 56888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccCC
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 444 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN 444 (1464)
+++|..........+.- ......+|+|+|+..+.. .+ -+..+|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~~---p~--~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALFL---PF--KNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhcc---cc--cCCCEEEEECCCcccc
Confidence 89887544332211100 012356899999876531 22 2467999999998632
Q ss_pred c--chHHH-----HHHHh-cccccEEeecccc
Q 000482 445 K--DSKLF-----SSLKQ-YSTRHRVLLTGTP 468 (1464)
Q Consensus 445 ~--~Sk~~-----~al~~-l~~~~rLLLTGTP 468 (1464)
. ....+ ..++. ......+++||||
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATp 304 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATP 304 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCC
Confidence 1 11111 11122 2344678899999
No 86
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=1.5e-14 Score=168.57 Aligned_cols=322 Identities=16% Similarity=0.279 Sum_probs=209.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhCC----CCcEEEEEccccH----HHHHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGER----ISPHLVVAPLSTL----RNWEREFATW 357 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~l~~~~----~~p~LIVvP~sll----~qW~~E~~k~ 357 (1464)
...|.|...+--. .-|+..+-+..+|+|||.. +|-+|..|+... ..++||+||+--| .+-.+.+.+|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3556676665321 2366677788999999976 355555555432 2389999997443 4566778888
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc---ccCCCceeEE
Q 000482 358 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCM 434 (1464)
Q Consensus 358 ~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~---~L~~i~w~~V 434 (1464)
+ ++.+....|.-+-+..-.. -...+||||.|+..+..... .|.--...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~--------------------------LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAV--------------------------LRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHH--------------------------HhhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 8 6888888888776543211 12468999999999876533 3333356789
Q ss_pred EeccccccCCcch-HHHHHHHhcccccE--EeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000482 435 IVDEGHRLKNKDS-KLFSSLKQYSTRHR--VLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 511 (1464)
Q Consensus 435 IvDEAHrlKN~~S-k~~~al~~l~~~~r--LLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 511 (1464)
|+|||.|+....- .-...+..+++++| +|.|||- ...+.+|.+
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~s--------------------------------- 377 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLAS--------------------------------- 377 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHH---------------------------------
Confidence 9999999864331 12233444445444 8889983 111222211
Q ss_pred HhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000482 512 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 591 (1464)
Q Consensus 512 ~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~ 591 (1464)
+ +| .+...|+|..+.. ....|..-+.++|
T Consensus 378 -l---------------SL--~kPvrifvd~~~~---------------------~a~~LtQEFiRIR------------ 406 (691)
T KOG0338|consen 378 -L---------------SL--NKPVRIFVDPNKD---------------------TAPKLTQEFIRIR------------ 406 (691)
T ss_pred -h---------------hc--CCCeEEEeCCccc---------------------cchhhhHHHheec------------
Confidence 1 11 1111122221100 0000000000000
Q ss_pred CCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHH
Q 000482 592 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 592 e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~ 671 (1464)
+.. ..-+-.+|..|+.++. ..+++||.+.......|.-.|...|+++.-++|+.++.+|-..+..
T Consensus 407 -~~r------------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 407 -PKR------------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred -ccc------------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 000 0012233444555544 5689999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCC-CcEEEEEEEeCCCHHHHHHHH
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQM 747 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~-k~V~VyrLvt~~TvEE~I~~~ 747 (1464)
|.+..-+ |||+|..++.||++..+-+||+|+.|-.-..|++|.||..|-|.. +.| -|+.++ |.+|+.-
T Consensus 472 Fk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 472 FKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV---TLVGES--DRKLLKE 540 (691)
T ss_pred HHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE---EEeccc--cHHHHHH
Confidence 9875544 899999999999999999999999999999999999999998865 344 466666 5555543
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=1.4e-13 Score=168.62 Aligned_cols=303 Identities=17% Similarity=0.285 Sum_probs=202.8
Q ss_pred CCCcHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH-HHHHHHHHHHCC--C
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 360 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~k~~P--~ 360 (1464)
.+|...|..+++-+..-.... -+-+|.-++|+|||+.|+..+......+ .-..+.+|+.+| .|-.+.|.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 578889999998875444443 3558889999999999876666555543 367888999887 677889999996 5
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
++|....|+-.....-...+ ....+..+++|-|+..+.....+- +..+||+||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~----------------------~l~~G~~~ivVGTHALiQd~V~F~---~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILE----------------------QLASGEIDIVVGTHALIQDKVEFH---NLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHH----------------------HHhCCCCCEEEEcchhhhcceeec---ceeEEEEeccc
Confidence 77888888755433211111 112356899999999886544332 45799999999
Q ss_pred ccCCcchHHHHHHHhc-c-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 000482 441 RLKNKDSKLFSSLKQY-S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 518 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l-~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~ 518 (1464)
|+.-. ....|+.- . ..|.|.|||||++-.+. ...|+++..
T Consensus 395 RFGV~---QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDldv--------------- 436 (677)
T COG1200 395 RFGVH---QRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLDV--------------- 436 (677)
T ss_pred cccHH---HHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhccccc---------------
Confidence 98643 22334333 2 57999999999876642 111222111
Q ss_pred HHHHHhhHhhcCCCceeeeecccCCHH-HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000482 519 LRRVKKDVMKELPPKKELILRVELSSK-QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 597 (1464)
Q Consensus 519 LRR~K~dv~~~LPpk~e~iv~v~ls~~-Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~ 597 (1464)
.+.+.+||...-+...-+... -.++|..+
T Consensus 437 ------S~IdElP~GRkpI~T~~i~~~~~~~v~e~i-------------------------------------------- 466 (677)
T COG1200 437 ------SIIDELPPGRKPITTVVIPHERRPEVYERI-------------------------------------------- 466 (677)
T ss_pred ------hhhccCCCCCCceEEEEeccccHHHHHHHH--------------------------------------------
Confidence 123467776433332222211 11222222
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhh--------HHHHHHHHh--hcCCeEEEEEcCCCHHHHHH
Q 000482 598 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLT--FKKWQYERIDGKVGGAERQI 667 (1464)
Q Consensus 598 ~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~--------LdiL~~~L~--~~g~~~~ridGs~s~~eRq~ 667 (1464)
.+-..+|+++.+.|.-+.. ...+...|. ..++++..++|.++++++++
T Consensus 467 ----------------------~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 467 ----------------------REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred ----------------------HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 1112356666666665432 222333333 23677899999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCC-CChhcHHHHHHhhhhcCCCC
Q 000482 668 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 668 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k 727 (1464)
++.+|+++..+ +|+||.+..+|||++.|+.+||++.. +--++.-|-.||++|=+...
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 99999876655 89999999999999999999999997 77888899999999955443
No 88
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=6.7e-15 Score=158.31 Aligned_cols=165 Identities=26% Similarity=0.408 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 361 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l 361 (1464)
.+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 369999999998887776654 89999999999999999998888877 99999996 88899999998888655
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc-------------cCC
Q 000482 362 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 428 (1464)
Q Consensus 362 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~-------------L~~ 428 (1464)
............. ...... ................+++++++..+...... +..
T Consensus 78 ~~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYD----SKEFIS---------IQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE-----SEEET---------TTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhcccccccccc----cccccc---------cccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 4443321110000 000000 00000001111234678999999999765322 222
Q ss_pred CceeEEEeccccccCCcchHHHHHHHhcccccEEeeccccc
Q 000482 429 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 469 (1464)
Q Consensus 429 i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPl 469 (1464)
-.+++||+||||++.+... ++.+..+...++|+|||||.
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3689999999999866543 55555588889999999994
No 89
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=1.1e-13 Score=161.07 Aligned_cols=319 Identities=18% Similarity=0.277 Sum_probs=211.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHH-HHHHHh-----CCCCcE-EEEEcc-ccHHHHHHHHHHHC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFG-----ERISPH-LVVAPL-STLRNWEREFATWA 358 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~l~~-----~~~~p~-LIVvP~-sll~qW~~E~~k~~ 358 (1464)
+..|.|-.+|--. ..++.+|=..-+|+|||-..+.- +.++.. .+.+|+ ||+||. .+..|-..|.++|+
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 3555666665432 34666776678999999654322 222222 134576 677886 66788899999885
Q ss_pred --CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCceeEE
Q 000482 359 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 434 (1464)
Q Consensus 359 --P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~V 434 (1464)
-+++++..+|....-+.+... .....+||+|.+.+..... ...-.+-.+|
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~L--------------------------k~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKEL--------------------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhh--------------------------hcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 468888888776555444332 1456799999988764321 1222345789
Q ss_pred EeccccccCCc--chHHHHHHHhccccc-EEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000482 435 IVDEGHRLKNK--DSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 511 (1464)
Q Consensus 435 IvDEAHrlKN~--~Sk~~~al~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 511 (1464)
|+|||.|+-.. ..+.......++..+ .|+.|+|- . ..+.+|.
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~la 419 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKLA 419 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHHH
Confidence 99999998543 334444444555443 57888882 1 1111111
Q ss_pred HhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000482 512 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 591 (1464)
Q Consensus 512 ~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~ 591 (1464)
.+++. -|.......|.+-. .. +.+.--+|
T Consensus 420 ------------rd~L~--dpVrvVqg~vgean------------------------~d----ITQ~V~V~--------- 448 (731)
T KOG0339|consen 420 ------------RDILS--DPVRVVQGEVGEAN------------------------ED----ITQTVSVC--------- 448 (731)
T ss_pred ------------HHHhc--CCeeEEEeehhccc------------------------cc----hhheeeec---------
Confidence 11111 11111111111000 00 00000000
Q ss_pred CCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHH
Q 000482 592 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 592 e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~ 671 (1464)
.....|+..|.+-|......| +||||..-....+-|...|..+|+++..++|++.+.+|.+.|..
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 112346676766666665554 89999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHH
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 741 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvE 741 (1464)
|...... +|+.|....+|+++....+||+||..-.-..+.|+|||.+|-|-+ -..|.|||....+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876665 899999999999999999999999999999999999999999987 5678888876443
No 90
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.58 E-value=3.9e-14 Score=168.41 Aligned_cols=310 Identities=17% Similarity=0.246 Sum_probs=203.9
Q ss_pred cHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCC-cEEEEEccccH-HHHHHHHHHHCC---CCe
Q 000482 289 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWAP---QMN 362 (1464)
Q Consensus 289 rpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~-p~LIVvP~sll-~qW~~E~~k~~P---~l~ 362 (1464)
.+.|..++--. ..+-..|+..-.|+|||+.. ++.+..|-..... -.|||+|+.-+ -|-...|...+| +++
T Consensus 49 tkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 49 TKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred Cchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 35666666433 44567899999999999874 3333444333222 67999997544 577777777776 678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCceeEEEecccc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAH 440 (1464)
+.+|.|...-..... ...+.+|+|-|...+... ...+..-+.+++|+|||.
T Consensus 125 csvfIGGT~~~~d~~---------------------------rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD 177 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDLI---------------------------RLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD 177 (980)
T ss_pred eEEEecCchhhhhhh---------------------------hhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH
Confidence 888988765432211 123567999999988653 345555677899999999
Q ss_pred ccCCcch---HHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000482 441 RLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 516 (1464)
Q Consensus 441 rlKN~~S---k~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p 516 (1464)
.|-...| .+...+..+. .+..+..|||= ..++.+ .|.+.++.
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATY-p~nLdn---------------------------------~Lsk~mrd 223 (980)
T KOG4284|consen 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATY-PRNLDN---------------------------------LLSKFMRD 223 (980)
T ss_pred hhhchhhHHHHHHHHHHhcchhheeeEEeccC-chhHHH---------------------------------HHHHHhcc
Confidence 9976544 3444555554 45567889983 111111 12222222
Q ss_pred hhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000482 517 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 596 (1464)
Q Consensus 517 ~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~ 596 (1464)
-+|-|..++-. .|-..+.+++.+ |..|
T Consensus 224 p~lVr~n~~d~-~L~GikQyv~~~-----------------------------------------~s~n----------- 250 (980)
T KOG4284|consen 224 PALVRFNADDV-QLFGIKQYVVAK-----------------------------------------CSPN----------- 250 (980)
T ss_pred cceeecccCCc-eeechhheeeec-----------------------------------------cCCc-----------
Confidence 22222211110 010000000000 0000
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccC
Q 000482 597 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 676 (1464)
Q Consensus 597 ~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~ 676 (1464)
...+. .--|++.|-.++..+. =...||||....-.+-|.++|...|+.+..|.|.|++.+|..+++.+.+
T Consensus 251 ---nsvee---mrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-- 320 (980)
T KOG4284|consen 251 ---NSVEE---MRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-- 320 (980)
T ss_pred ---chHHH---HHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh--
Confidence 00000 1124455555554432 1357999999999999999999999999999999999999999999976
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC
Q 000482 677 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 677 s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 727 (1464)
-...+|+||+..+.||+-..++.||++|++-+-..|.+|||||+|+|..-
T Consensus 321 -f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 -FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred -ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 34458999999999999999999999999999999999999999999764
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=5e-13 Score=166.38 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=74.9
Q ss_pred HHHHHHHHhhc--CCeEEEEEcCCCHHHH--HHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC---Ch-
Q 000482 639 LDLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---NP- 710 (1464)
Q Consensus 639 LdiL~~~L~~~--g~~~~ridGs~s~~eR--q~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW---NP- 710 (1464)
.+.+++.|... +.++.++|+.++...+ +++++.|.++..+ +|++|...+.|+|++.++.|+++|.|- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56777777654 7899999999876655 8899999875444 899999999999999999998887763 23
Q ss_pred --------hcHHHHHHhhhhcCCCCcEEEEEE
Q 000482 711 --------HADLQAMARAHRLGQTNKVMIFRL 734 (1464)
Q Consensus 711 --------~~d~QAigRahRiGQ~k~V~VyrL 734 (1464)
+.+.|+.||++|-+....|.|..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 678999999999887777765433
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=6.8e-13 Score=169.04 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=112.4
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..+.+-+..+.+.|..|||||..+...+.|..+|...|+++..++|.....+|+.+.+.|..+ .++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEecc
Confidence 46689999999999999999999999999999999999999999999999999999999999999764 2799999
Q ss_pred ccccccCccCC--------------------------------------CEEEEecCCCChhcHHHHHHhhhhcCCCCcE
Q 000482 688 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 729 (1464)
Q Consensus 688 Agg~GINL~~A--------------------------------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V 729 (1464)
.+|.|+++.=. =+||.-..+=|-..+.|-.||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 99999997621 2788888999999999999999999988766
Q ss_pred EEEEEEeCCCHHHHHHHH
Q 000482 730 MIFRLITRGSIEERMMQM 747 (1464)
Q Consensus 730 ~VyrLvt~~TvEE~I~~~ 747 (1464)
..|. |+|..++.+
T Consensus 581 ~f~l-----SleD~l~~~ 593 (896)
T PRK13104 581 RFYL-----SLEDNLMRI 593 (896)
T ss_pred EEEE-----EcCcHHHHH
Confidence 5543 345555543
No 93
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=5.2e-13 Score=152.06 Aligned_cols=313 Identities=19% Similarity=0.311 Sum_probs=208.0
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHH--HHHHH-----HhCCCC-cEEEEEccccH-HHHHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA--FLASL-----FGERIS-PHLVVAPLSTL-RNWEREFATW 357 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa--~l~~l-----~~~~~~-p~LIVvP~sll-~qW~~E~~k~ 357 (1464)
+..|.|-++ |- ....|..+|-...+|.|||+.-|. ++... +....+ ..||++|..-| .|-+-|..++
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 466667665 42 236788999999999999976432 11111 122334 57888996444 5566666554
Q ss_pred C-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCceeEE
Q 000482 358 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 434 (1464)
Q Consensus 358 ~-P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~V 434 (1464)
. -++..++++|...--..+.+. ..+.+++|.|...+... ...+.--...+|
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 456667777665544444332 24678999999887642 233333346789
Q ss_pred EeccccccCC--cchHHHHHHHhcccccEEee-cccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000482 435 IVDEGHRLKN--KDSKLFSSLKQYSTRHRVLL-TGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 511 (1464)
Q Consensus 435 IvDEAHrlKN--~~Sk~~~al~~l~~~~rLLL-TGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 511 (1464)
|+|||.++.. ..-++.+.|..++..+-..| |||-
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW------------------------------------------- 408 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW------------------------------------------- 408 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-------------------------------------------
Confidence 9999999865 45678888888887765544 5552
Q ss_pred HhhhhhhHHHHHhhHhhcCCCceeeeeccc---CCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000482 512 RMLAPHLLRRVKKDVMKELPPKKELILRVE---LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 588 (1464)
Q Consensus 512 ~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~---ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~ 588 (1464)
|.-+||+....++ ...+++|. |.. +|.
T Consensus 409 ----P~~VrrLa~sY~K-----ep~~v~vGsLdL~a--------------------------------------~~s--- 438 (629)
T KOG0336|consen 409 ----PEGVRRLAQSYLK-----EPMIVYVGSLDLVA--------------------------------------VKS--- 438 (629)
T ss_pred ----chHHHHHHHHhhh-----CceEEEecccceee--------------------------------------eee---
Confidence 0111222111111 11122221 110 000
Q ss_pred cCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHH
Q 000482 589 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 668 (1464)
Q Consensus 589 ~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~ 668 (1464)
+...+ ..-..+.|+..+..++..+ ....|||||+....++|-|..-|...|+....++|.-.+.+|+.+
T Consensus 439 --VkQ~i--------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~a 507 (629)
T KOG0336|consen 439 --VKQNI--------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMA 507 (629)
T ss_pred --eeeeE--------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHH
Confidence 00000 0001234555555555443 357899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 669 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 669 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
++.|. ++.+.+|++|..++.||++++..+|+.||.+-|-..|.+|+||.+|.|.+-.-. -|++.+
T Consensus 508 l~~~k---sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si--s~lt~~ 572 (629)
T KOG0336|consen 508 LEDFK---SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI--SFLTRN 572 (629)
T ss_pred HHhhh---cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE--EEEehh
Confidence 99995 566779999999999999999999999999999999999999999999775432 344554
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.53 E-value=1e-12 Score=170.75 Aligned_cols=357 Identities=16% Similarity=0.148 Sum_probs=191.0
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEccc-cHHHHHHHHHH----HC
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLS-TLRNWEREFAT----WA 358 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~s-ll~qW~~E~~k----~~ 358 (1464)
+..++|+|.....-. ..++-.||-+.||.|||-.|+.++..+...+ ...+++..|.. +..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 567999999764321 3466789999999999999999888776543 35889999964 45555555543 44
Q ss_pred CCCeEEEEEcChhHHHHHHHhhhc-CCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-----ccCC--Cc
Q 000482 359 PQMNVVMYVGTSQARNIIREYEFY-FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-----SLKP--IK 430 (1464)
Q Consensus 359 P~l~vvvy~G~~~~R~~i~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~-----~L~~--i~ 430 (1464)
+..++...||...-........-. ...............+.........-.+|+|+|.+.+....- .++. +.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 566788888876432111110000 000000000000000111011112336899999988763211 1111 12
Q ss_pred eeEEEeccccccCCcchHH-HHHHHhcc--cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000482 431 WQCMIVDEGHRLKNKDSKL-FSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 507 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~Sk~-~~al~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i 507 (1464)
=.+|||||+|-+-...+.+ ...|..+. ....++||||+-..-..+|...+. ..
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~---~~--------------------- 495 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYG---GH--------------------- 495 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhc---cc---------------------
Confidence 2489999999985443333 33333332 245799999972111111111000 00
Q ss_pred HHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000482 508 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 587 (1464)
Q Consensus 508 ~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L 587 (1464)
.+ .......|-... +. ... . . .+ .+..|+..
T Consensus 496 -------~~-------~~~~~~YPlvt~----~~--~~~------~-------------~---------~~-~~~~~~~~ 526 (878)
T PRK09694 496 -------DP-------VELSSAYPLITW----RG--VNG------A-------------Q---------RF-DLSAHPEQ 526 (878)
T ss_pred -------cc-------cccccccccccc----cc--ccc------c-------------e---------ee-eccccccc
Confidence 00 000000000000 00 000 0 0 00 00001000
Q ss_pred ccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcC---CeEEEEEcCCCHHH
Q 000482 588 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 664 (1464)
Q Consensus 588 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g---~~~~ridGs~s~~e 664 (1464)
... ...+.-.. ..+-.....-.++..++.. ...|.+||||++.+..+..+.+.|...+ +++..++|.++..+
T Consensus 527 ~~~-~~~v~v~~---~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPA-RFTIQLEP---ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCc-ceEEEEEe---eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 000 00000000 0000000112233333333 3568999999999999999999998765 68999999999999
Q ss_pred H----HHHHHHHhccCC-CceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCC
Q 000482 665 R----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 726 (1464)
Q Consensus 665 R----q~~Id~Fn~~~s-~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~ 726 (1464)
| +++++.|..... ....+||+|.+...|||+ .+|.+|....+ ...++||+||+||.|.+
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 8 467888943222 223589999999999999 57988886655 56899999999999874
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.52 E-value=9.3e-13 Score=176.69 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=92.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC--e
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l--~ 362 (1464)
..+.++|..++..+ ..|.+.++...+|+|||.-++.++..+... ...+|||+|+ .+..|+.+.|..++..+ .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45789999988665 578899999999999998665555444333 3489999996 66688999999987543 2
Q ss_pred E---EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccc
Q 000482 363 V---VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 439 (1464)
Q Consensus 363 v---vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEA 439 (1464)
+ ..|+|...........+. .....++|+|+|+..+......+.. .+++||||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2 346675433221111000 0123589999999999876665554 7899999999
Q ss_pred cccCC
Q 000482 440 HRLKN 444 (1464)
Q Consensus 440 HrlKN 444 (1464)
|++-.
T Consensus 209 D~~L~ 213 (1171)
T TIGR01054 209 DALLK 213 (1171)
T ss_pred Hhhhh
Confidence 99865
No 96
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.52 E-value=1.2e-12 Score=168.56 Aligned_cols=310 Identities=21% Similarity=0.228 Sum_probs=190.7
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC-CCCeEE
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 364 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~-P~l~vv 364 (1464)
+|+|.|.++|.-.. ..+.|+|++..||+|||+.|+..+.....++.++++-|||. ++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 79999999984332 33899999999999999999877777666666799999995 77777888888443 278999
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhccc--CCCceeEEEecccccc
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRL 442 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L--~~i~w~~VIvDEAHrl 442 (1464)
+++|+.+... .....++|+|||||.+..-.... --...++|||||+|-+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999876432 12357899999999885321111 1224689999999999
Q ss_pred CCc-chH----HHHHHHhccc-ccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000482 443 KNK-DSK----LFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 516 (1464)
Q Consensus 443 KN~-~Sk----~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p 516 (1464)
... ... +...++.+.. -..++||||- .|..|+...| +...+. ....|
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~wL---~a~~~~----------------------~~~rp 211 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVADWL---NAKLVE----------------------SDWRP 211 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHHHh---CCcccc----------------------cCCCC
Confidence 765 221 1222222333 3568899994 2333333222 111110 00111
Q ss_pred hhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000482 517 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 596 (1464)
Q Consensus 517 ~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~ 596 (1464)
.-++| ..|... ...... +.. .
T Consensus 212 ~~l~~-------~v~~~~-~~~~~~-----------------------~~~----------------------------k 232 (766)
T COG1204 212 VPLRR-------GVPYVG-AFLGAD-----------------------GKK----------------------------K 232 (766)
T ss_pred ccccc-------CCccce-EEEEec-----------------------Ccc----------------------------c
Confidence 11111 000000 000000 000 0
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh----c---------C-------------
Q 000482 597 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----K---------K------------- 650 (1464)
Q Consensus 597 ~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~----~---------g------------- 650 (1464)
.....+...+..++....+.|..||||+.........+..|.. . .
T Consensus 233 ---------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 303 (766)
T COG1204 233 ---------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPT 303 (766)
T ss_pred ---------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccc
Confidence 0011122334445555566788889998887654444444431 0 0
Q ss_pred -----------CeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE-----ec-----CCCC
Q 000482 651 -----------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YD-----SDWN 709 (1464)
Q Consensus 651 -----------~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi-----~D-----~dWN 709 (1464)
..+..-+.+++.++|+-+-+.|++ +.+-+|++|-..+.|+||++= +||| || -+-+
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~---g~ikVlv~TpTLA~GVNLPA~-~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK---GKIKVLVSTPTLAAGVNLPAR-TVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc---CCceEEEechHHhhhcCCcce-EEEEeeeEEEcCCCCeEECc
Confidence 012334567788899999999976 445689999999999999854 5554 45 3346
Q ss_pred hhcHHHHHHhhhhcCCCC
Q 000482 710 PHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 710 P~~d~QAigRahRiGQ~k 727 (1464)
+...+|-.|||+|.|=..
T Consensus 380 ~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred hhhHhhccCcCCCCCcCC
Confidence 788899999999998553
No 97
>PRK14701 reverse gyrase; Provisional
Probab=99.51 E-value=1e-12 Score=179.56 Aligned_cols=336 Identities=16% Similarity=0.233 Sum_probs=187.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC----C
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----Q 360 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P----~ 360 (1464)
.++++.|..++..+ ..+.+.++..+||+|||...+.++..+ ......+|||+|+ .++.|....|..++. +
T Consensus 78 ~~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 45889999998766 568899999999999998433222222 2222379999996 667889999988764 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
.++..++|.....+.....+- .....++|+|+|.+.+......+....+++|||||||
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~----------------------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD 210 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLER----------------------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVD 210 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECce
Confidence 566777777544332111100 0124689999999988755443333568999999999
Q ss_pred ccCCcchHHHHHHHhcccccEEeecccccCCCHHHHH-HHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhH
Q 000482 441 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF-MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 519 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~-sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~L 519 (1464)
++-...-..-+.|. |-|- ..|+. ..+..+......+.. ...+.+..|...+.
T Consensus 211 ~ml~~~knid~~L~---------llGF-----~~e~~~~~~~il~~~~~~~~~---------~~~~~~~~l~~~~~---- 263 (1638)
T PRK14701 211 AFLKASKNIDRSLQ---------LLGF-----YEEIIEKAWKIIYLKKQGNIE---------DAMEKREILNKEIE---- 263 (1638)
T ss_pred eccccccccchhhh---------cCCC-----hHHHHHHHHHhhhcccccccc---------hhhhhhhhhhhhhh----
Confidence 98532110111111 0010 01111 011111100000000 00122333333321
Q ss_pred HHHHhhHhhcCCCceeeee--cccCCHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000482 520 RRVKKDVMKELPPKKELIL--RVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEPDIE 596 (1464)
Q Consensus 520 RR~K~dv~~~LPpk~e~iv--~v~ls~~Qk~~Y~~il~~~~~~l~~~-~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~ 596 (1464)
.+|......+ ...+++... ...++.. .+.-. +..... ++.+ .|.|+.
T Consensus 264 ---------~~~~~~~~ll~~SAT~~~r~~--~~~l~~~---~l~f~v~~~~~~-------lr~i-~~~yi~-------- 313 (1638)
T PRK14701 264 ---------KIGNKIGCLIVASATGKAKGD--RVKLYRE---LLGFEVGSGRSA-------LRNI-VDVYLN-------- 313 (1638)
T ss_pred ---------hcCCCccEEEEEecCCCchhH--HHHHhhc---CeEEEecCCCCC-------CCCc-EEEEEE--------
Confidence 1222222222 223332100 0011100 00000 000000 0000 011110
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhh---HHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHh
Q 000482 597 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 673 (1464)
Q Consensus 597 ~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~---LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn 673 (1464)
.....| ..|..++..+ |..+||||+.... ++.|..+|...|+++..++|. |..++++|.
T Consensus 314 ---------~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~ 375 (1638)
T PRK14701 314 ---------PEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE 375 (1638)
T ss_pred ---------CCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH
Confidence 001112 3455555543 6789999997664 589999999999999999984 899999998
Q ss_pred ccCCCceEEEeecc----ccccccCccC-CCEEEEecCCC---ChhcHHH-------------HHHhhhhcCCC
Q 000482 674 AKNSSRFCFLLSTR----AGGLGINLAT-ADTVIIYDSDW---NPHADLQ-------------AMARAHRLGQT 726 (1464)
Q Consensus 674 ~~~s~~~vfLlSTr----Agg~GINL~~-Ad~VIi~D~dW---NP~~d~Q-------------AigRahRiGQ~ 726 (1464)
++... +|++|. .+++|||++. ...||+||.|- |...+.| .+||++|-|..
T Consensus 376 ~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 376 EGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 75554 788884 6789999998 99999999987 5544444 45999998853
No 98
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=4.4e-13 Score=152.01 Aligned_cols=320 Identities=18% Similarity=0.273 Sum_probs=198.7
Q ss_pred CCCcccccccCCCCCCCC------CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC----CCC-
Q 000482 268 KKPKEFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE----RIS- 336 (1464)
Q Consensus 268 ~~~~~~~~~~~~P~~~~g------~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~----~~~- 336 (1464)
-..+.|..+.-.|..+.| ......|..++-.| +.....+.|-....|+|||.. |...++.. ...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaa---FvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAA---FVLTMLSRVDPDVVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHH---HHHHHHHhcCccccCC
Confidence 345678888888888765 24555777777655 335677788888999999964 33333322 122
Q ss_pred cEEEEEcc-ccHHHHHHHHHHHCC--CCeEEE-EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEE
Q 000482 337 PHLVVAPL-STLRNWEREFATWAP--QMNVVM-YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVL 412 (1464)
Q Consensus 337 p~LIVvP~-sll~qW~~E~~k~~P--~l~vvv-y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVv 412 (1464)
-.+.++|. .+..|-.+-+.+-.. ++.+.. +.|++.. +.....-+|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~------------------------------rG~~i~eqIv 211 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK------------------------------RGNKLTEQIV 211 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc------------------------------cCCcchhhee
Confidence 34666896 445555444444331 222211 1111110 1123456799
Q ss_pred EecHHHHHhhhcccCCC---ceeEEEeccccccCCcch---HHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHhhcC
Q 000482 413 LTSYEMINLDSASLKPI---KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDA 485 (1464)
Q Consensus 413 ItSYe~l~~d~~~L~~i---~w~~VIvDEAHrlKN~~S---k~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p 485 (1464)
|-|..++......|+.+ ...++|+|||..+-+... ...+..+.+. ....++.|||-.
T Consensus 212 iGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~---------------- 275 (477)
T KOG0332|consen 212 IGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV---------------- 275 (477)
T ss_pred eCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH----------------
Confidence 99998887654443333 457899999998876542 1222233333 445678888820
Q ss_pred CCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcC
Q 000482 486 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 565 (1464)
Q Consensus 486 ~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~ 565 (1464)
.....|...+ -.--.+.+|||. ++ .|++..+..+.|.
T Consensus 276 ---e~V~~Fa~ki------------vpn~n~i~Lk~e--el--~L~~IkQlyv~C~------------------------ 312 (477)
T KOG0332|consen 276 ---EKVAAFALKI------------VPNANVIILKRE--EL--ALDNIKQLYVLCA------------------------ 312 (477)
T ss_pred ---HHHHHHHHHh------------cCCCceeeeehh--hc--cccchhhheeecc------------------------
Confidence 0000110000 000001111110 00 1222222222221
Q ss_pred CchhhHHHHHHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHH
Q 000482 566 GAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDY 645 (1464)
Q Consensus 566 ~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~ 645 (1464)
+ ...|+.+|..|. .+..-| ..||||+...++..|...
T Consensus 313 ------------------~-----------------------~~~K~~~l~~ly-g~~tig-qsiIFc~tk~ta~~l~~~ 349 (477)
T KOG0332|consen 313 ------------------C-----------------------RDDKYQALVNLY-GLLTIG-QSIIFCHTKATAMWLYEE 349 (477)
T ss_pred ------------------c-----------------------hhhHHHHHHHHH-hhhhhh-heEEEEeehhhHHHHHHH
Confidence 1 123555555532 222223 689999999999999999
Q ss_pred HhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC------ChhcHHHHHHh
Q 000482 646 LTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMAR 719 (1464)
Q Consensus 646 L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW------NP~~d~QAigR 719 (1464)
|...|+.+..++|.+...+|..+|++|..+.+. +|++|.++++||+.+.++.||+||.+- .|..|++|+||
T Consensus 350 m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGR 426 (477)
T KOG0332|consen 350 MRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGR 426 (477)
T ss_pred HHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcc
Confidence 999999999999999999999999999875554 899999999999999999999999875 57899999999
Q ss_pred hhhcCCCC
Q 000482 720 AHRLGQTN 727 (1464)
Q Consensus 720 ahRiGQ~k 727 (1464)
.+|.|.+-
T Consensus 427 tGRFGkkG 434 (477)
T KOG0332|consen 427 TGRFGKKG 434 (477)
T ss_pred cccccccc
Confidence 99999654
No 99
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=5.1e-14 Score=156.27 Aligned_cols=301 Identities=19% Similarity=0.233 Sum_probs=198.6
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCC-cEEEEEcccc----HHHHHHHHHHHCCCC
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLST----LRNWEREFATWAPQM 361 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~-p~LIVvP~sl----l~qW~~E~~k~~P~l 361 (1464)
..|.|.+++--. -.|++.+.-.--|+|||-.- |-.+..+-..... -.+|+||..- ..|-..++.++. ++
T Consensus 108 PSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 444555544221 23444444456799999653 2333332222222 6799999533 367788898988 68
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCceeEEEeccc
Q 000482 362 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEG 439 (1464)
Q Consensus 362 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~VIvDEA 439 (1464)
.+.+-+|...-|..|... ....|++|.|...+..-.. .-.--+...+|+|||
T Consensus 183 ~vmvttGGT~lrDDI~Rl--------------------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMRL--------------------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEEecCCcccccceeee--------------------------cCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 888888887665533221 2357899999987754211 111124568999999
Q ss_pred cccCCcch--HHHHHHHhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000482 440 HRLKNKDS--KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 516 (1464)
Q Consensus 440 HrlKN~~S--k~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p 516 (1464)
..+.+..- .+-+.+.-+. .+..+|.|||- +. ....
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATF-P~------------------tVk~----------------------- 274 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATF-PL------------------TVKG----------------------- 274 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEeccc-ch------------------hHHH-----------------------
Confidence 99876432 2333344443 34457777772 00 1111
Q ss_pred hhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000482 517 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 596 (1464)
Q Consensus 517 ~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~ 596 (1464)
||-|.+++- -++.+.-+|+..-
T Consensus 275 Fm~~~l~kP--------y~INLM~eLtl~G-------------------------------------------------- 296 (459)
T KOG0326|consen 275 FMDRHLKKP--------YEINLMEELTLKG-------------------------------------------------- 296 (459)
T ss_pred HHHHhccCc--------ceeehhhhhhhcc--------------------------------------------------
Confidence 222221110 0111111111100
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccC
Q 000482 597 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 676 (1464)
Q Consensus 597 ~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~ 676 (1464)
-..+-..+..+.|+..|.-|+.+|.= ...||||+.+...++|+..+...||++..++..|.++.|......|.++.
T Consensus 297 --vtQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~ 372 (459)
T KOG0326|consen 297 --VTQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK 372 (459)
T ss_pred --hhhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc
Confidence 00112234456788888888888753 47999999999999999999999999999999999999999999998744
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCC
Q 000482 677 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 726 (1464)
Q Consensus 677 s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~ 726 (1464)
- ..|++|+..-.||+++++++||+||.+-|+..|+.|+||.+|.|--
T Consensus 373 c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 373 C---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred c---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 3 3799999999999999999999999999999999999999999965
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.50 E-value=1.5e-11 Score=138.69 Aligned_cols=311 Identities=19% Similarity=0.211 Sum_probs=207.0
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCe
Q 000482 284 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN 362 (1464)
Q Consensus 284 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~ 362 (1464)
.+|+|.|+|..+.+-+...+.+....|+...+|.|||=+....+...++.+ +.+.|..|. .++-.-...++.-+++..
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCC
Confidence 468999999999999999999999999999999999988777777766654 489999994 666666677788788899
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccccc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 442 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrl 442 (1464)
+...+|.++... ...=||-||++.++- .-.||++||||+.-+
T Consensus 173 I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF------k~aFD~liIDEVDAF 214 (441)
T COG4098 173 IDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF------KQAFDLLIIDEVDAF 214 (441)
T ss_pred eeeEecCCchhc--------------------------------cccEEEEehHHHHHH------HhhccEEEEeccccc
Confidence 999998876521 112266667766642 225799999999987
Q ss_pred CC-cchHHHHHHHhcc--cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhh-h
Q 000482 443 KN-KDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH-L 518 (1464)
Q Consensus 443 KN-~~Sk~~~al~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~-~ 518 (1464)
-= .+-.+..+++.-. ....+.|||||-. +| .+. -++.-+.+. +
T Consensus 215 P~~~d~~L~~Av~~ark~~g~~IylTATp~k----~l------------------~r~-----------~~~g~~~~~kl 261 (441)
T COG4098 215 PFSDDQSLQYAVKKARKKEGATIYLTATPTK----KL------------------ERK-----------ILKGNLRILKL 261 (441)
T ss_pred cccCCHHHHHHHHHhhcccCceEEEecCChH----HH------------------HHH-----------hhhCCeeEeec
Confidence 42 2334455555443 3467999999911 00 000 000001000 0
Q ss_pred HHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccch
Q 000482 519 LRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 598 (1464)
Q Consensus 519 LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~ 598 (1464)
-+|.- .+.||-....++ . .
T Consensus 262 p~RfH---~~pLpvPkf~w~--~--~------------------------------------------------------ 280 (441)
T COG4098 262 PARFH---GKPLPVPKFVWI--G--N------------------------------------------------------ 280 (441)
T ss_pred chhhc---CCCCCCCceEEe--c--c------------------------------------------------------
Confidence 11111 011221111111 0 0
Q ss_pred hHHHHHHHhhhhHHH-HHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCC-CHHHHHHHHHHHhccC
Q 000482 599 NESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKV-GGAERQIRIDRFNAKN 676 (1464)
Q Consensus 599 ~~~~~~li~~SgKl~-~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~-s~~eRq~~Id~Fn~~~ 676 (1464)
..+.+ .-+|+. .|...|++....|..+|||...+.+++-+...|+ .++++..|..-. ....|.+.+..|.+
T Consensus 281 --~~k~l--~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk-~~~~~~~i~~Vhs~d~~R~EkV~~fR~-- 353 (441)
T COG4098 281 --WNKKL--QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALK-KKLPKETIASVHSEDQHRKEKVEAFRD-- 353 (441)
T ss_pred --HHHHh--hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHH-hhCCccceeeeeccCccHHHHHHHHHc--
Confidence 00000 011222 4567788888889999999999999999999985 345555533322 23578999999976
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCC--CChhcHHHHHHhhhhcCCCCcEEEEEEE
Q 000482 677 SSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLI 735 (1464)
Q Consensus 677 s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~d--WNP~~d~QAigRahRiGQ~k~V~VyrLv 735 (1464)
+.+-+|++|..+..|+.++..|+.++=.-. ++-+..+|.-||++|--..-.-.|+.|.
T Consensus 354 -G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 354 -GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred -CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 445599999999999999999999886655 8899999999999996655444444444
No 101
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.49 E-value=2.1e-12 Score=167.82 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=91.3
Q ss_pred CceEEEEecchhhHHHHHHHHhh---cCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000482 626 GHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 702 (1464)
Q Consensus 626 g~KVLIFSq~~~~LdiL~~~L~~---~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 702 (1464)
+.++|||+......+.+...|.. .++.+..++|+++.++|.++++.|.. +...+|++|..+..||+++.+++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ---GRRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc---CCeEEEEecchHhhcccccCceEEE
Confidence 56899999999999999999976 47899999999999999999999854 3445899999999999999999999
Q ss_pred EecCC----CChhc--------------HHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 703 IYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 703 i~D~d----WNP~~--------------d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
.++.. +||.. ..||.||++|. ++-.+|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 98864 56655 67888888886 577789999865
No 102
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=2.9e-12 Score=163.26 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..|.+.+.++...|..|||||..+...+.|...|...|+++..++|. ..+|+..|..|.... ..++|+|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~---g~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRP---GAVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCC---ceEEEecc
Confidence 4568999999999988999999999999999999999999999999999995 678999999996433 35899999
Q ss_pred ccccccCccCC--------------------------------------CEEEEecCCCChhcHHHHHHhhhhcCCCCcE
Q 000482 688 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 729 (1464)
Q Consensus 688 Agg~GINL~~A--------------------------------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V 729 (1464)
.+|+|+|+.-. =+||.-..+=|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998643 2788888899999999999999999998776
Q ss_pred EEE
Q 000482 730 MIF 732 (1464)
Q Consensus 730 ~Vy 732 (1464)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 654
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.6e-12 Score=165.12 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..|.+.+......|..|||||..+...+.|...|...|+++..++|.....++..+...+. .+ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~---~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ---RG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC---Cc--eEEEEec
Confidence 356888999999988889999999999999999999999999999999999987655555554443 33 3799999
Q ss_pred ccccccCcc---CCC-----EEEEecCCCChhcHHHHHHhhhhcCCCCcEEE
Q 000482 688 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 731 (1464)
Q Consensus 688 Agg~GINL~---~Ad-----~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 731 (1464)
.+|+|+++. .+. +||.++.+-|...+.|+.||++|.|..-....
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 999999995 567 99999999999999999999999998876643
No 104
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.46 E-value=1.1e-12 Score=154.69 Aligned_cols=361 Identities=18% Similarity=0.268 Sum_probs=214.4
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHh-------------CCCC-cEEEEEcc-ccHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFG-------------ERIS-PHLVVAPL-STLRN 349 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~l~~-------------~~~~-p~LIVvP~-sll~q 349 (1464)
|-.+|-+++++-.- ........+|=|.|+|+|||+. .|-++..+.+ .++. -.|||+|+ -+..|
T Consensus 200 gFs~Pt~IQsl~lp-~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLP-AAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred CCCCCccchhhccc-HhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 34555555554211 1112235677799999999987 4555653322 1122 26999997 55577
Q ss_pred HHHHHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hh
Q 000482 350 WEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DS 423 (1464)
Q Consensus 350 W~~E~~k~~--P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~----d~ 423 (1464)
-...|...+ +++++..+.|.-.....-+-. ....+|||+|...+-. +.
T Consensus 279 V~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 279 VKQHLKAIAEKTQIRVASITGGLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred HHHHHHHhccccCeEEEEeechhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhh
Confidence 777776655 578888888886554432211 1257899999876632 22
Q ss_pred cccCCC-ceeEEEecccccc--CCcchHHHHHHHhcc------cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHH
Q 000482 424 ASLKPI-KWQCMIVDEGHRL--KNKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 494 (1464)
Q Consensus 424 ~~L~~i-~w~~VIvDEAHrl--KN~~Sk~~~al~~l~------~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F 494 (1464)
..+..+ +..|||||||.|+ +++-..+.+.|..+. ....+..|||- .+.++. .. ..
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATl---------t~~~~~---~~---~~- 396 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATL---------TLVLQQ---PL---SS- 396 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEe---------ehhhcC---hh---HH-
Confidence 234443 3579999999998 444445555555543 12347788883 111100 00 00
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 000482 495 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 574 (1464)
Q Consensus 495 ~e~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~ni 574 (1464)
..-........-+.+..+++. +.-.=+| ..+++++.+.-. ..
T Consensus 397 -~~k~~~k~~~~~~kiq~Lmk~---------ig~~~kp-----kiiD~t~q~~ta-----------------------~~ 438 (731)
T KOG0347|consen 397 -SRKKKDKEDELNAKIQHLMKK---------IGFRGKP-----KIIDLTPQSATA-----------------------ST 438 (731)
T ss_pred -hhhccchhhhhhHHHHHHHHH---------hCccCCC-----eeEecCcchhHH-----------------------HH
Confidence 000000000111112222211 1111112 233444432221 11
Q ss_pred HHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEE
Q 000482 575 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 654 (1464)
Q Consensus 575 l~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ 654 (1464)
+.+-+--| -| +- .+. .|.-+|. .--.|.||||+.++.+..|.-+|...+++..
T Consensus 439 l~Es~I~C-~~-~e----KD~------------------ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 439 LTESLIEC-PP-LE----KDL------------------YLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHhhcC-Cc-cc----cce------------------eEEEEEe---ecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 11222222 11 00 000 0000000 1134899999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEE
Q 000482 655 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 734 (1464)
Q Consensus 655 ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 734 (1464)
.++.+|.+.+|-+.+++|....++ +||+|+++++||+++.+.+||+|..|-....|++|-||..|.+.. -|.|. |
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm-l 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM-L 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE-E
Confidence 999999999999999999876655 899999999999999999999999999999999999999997643 22221 2
Q ss_pred EeCC---------------------CHHHHHHHHHHHHHHHHHHHh
Q 000482 735 ITRG---------------------SIEERMMQMTKKKMVLEHLVV 759 (1464)
Q Consensus 735 vt~~---------------------TvEE~I~~~a~~K~~L~~~Vi 759 (1464)
+... .|++.|+..++.+-+|++.+.
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHH
Confidence 2111 257777777777777766653
No 105
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=153.85 Aligned_cols=315 Identities=19% Similarity=0.254 Sum_probs=205.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEccccHH-HHHHHHHHHCC--CC
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAP--QM 361 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~p~LIVvP~sll~-qW~~E~~k~~P--~l 361 (1464)
.+|.|-|.-+|.- ..-.|.+-++...+++|||+.+ +|-+-.++.. .+++|.+||+-.+. |=.++|..-+. ++
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 4699999999842 2368899999999999999976 5555555543 35999999986664 44566765442 34
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hcccCCCceeEEEecc
Q 000482 362 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCMIVDE 438 (1464)
Q Consensus 362 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---~~~L~~i~w~~VIvDE 438 (1464)
.+.+-.|...-+. . ... .........||++-||+-+.-- ...+. +...|||||
T Consensus 291 kvairVG~srIk~----~---------------~~p---v~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIKT----R---------------EEP---VVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhcc----c---------------CCc---cccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 5545555543221 0 000 1112346889999999977432 22333 356899999
Q ss_pred ccccCCc--chHH---HHHHHhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000482 439 GHRLKNK--DSKL---FSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 512 (1464)
Q Consensus 439 AHrlKN~--~Sk~---~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 512 (1464)
.|.|... ...+ ...|+.+. ....+.||||- .|+.||...|..-
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~----------------------------- 395 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK----------------------------- 395 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe-----------------------------
Confidence 9999762 2332 33334433 35678999995 4555554433210
Q ss_pred hhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000482 513 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 592 (1464)
Q Consensus 513 ~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e 592 (1464)
|--|- + .--|...+.+++.=
T Consensus 396 -lV~y~-~--------RPVplErHlvf~~~-------------------------------------------------- 415 (830)
T COG1202 396 -LVLYD-E--------RPVPLERHLVFARN-------------------------------------------------- 415 (830)
T ss_pred -eEeec-C--------CCCChhHeeeeecC--------------------------------------------------
Confidence 00000 0 00011112222110
Q ss_pred CCccchhHHHHHHHhhhhHHHHHHHHHHHHH----hcC--ceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHH
Q 000482 593 PDIEDTNESFKQLLESSGKLQLLDKMMVKLK----EQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 666 (1464)
Q Consensus 593 ~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~----~~g--~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq 666 (1464)
.+.|..++.+|.+.-. ..| ..+|||+...+-...|+++|..+|++..-++++++..+|+
T Consensus 416 ---------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk 480 (830)
T COG1202 416 ---------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERK 480 (830)
T ss_pred ---------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHH
Confidence 1223333333332211 112 3699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEE----ecCCC-ChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 667 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDSDW-NPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 667 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi----~D~dW-NP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
.+-..|.+.. ...+++|-|.|-|+++++. .||| +...| +|+.+.|..|||+|.+=...-.||-++-.|
T Consensus 481 ~vE~~F~~q~---l~~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 481 SVERAFAAQE---LAAVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHhcCC---cceEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999997644 4478999999999999864 4544 34445 999999999999999988888888888654
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=7.2e-12 Score=159.30 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=106.8
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|...+.+-+..+.+.|..|||||..+...+.|..+|...|+++..+++.....+|..+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467889999999999999999999999999999999999999999999999999999999999886533 799999
Q ss_pred ccccccCccCC-------------------------------------CEEEEecCCCChhcHHHHHHhhhhcCCCCcEE
Q 000482 688 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 688 Agg~GINL~~A-------------------------------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 730 (1464)
.+|.|+++.-. =+||.-..+=|-..+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999998622 27899999999999999999999999886555
Q ss_pred EE
Q 000482 731 IF 732 (1464)
Q Consensus 731 Vy 732 (1464)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 107
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.43 E-value=2.2e-13 Score=126.95 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.7
Q ss_pred HHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhc
Q 000482 644 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 723 (1464)
Q Consensus 644 ~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 723 (1464)
.+|+..|+++..++|.++..+|+.+++.|+.+.. .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999998665 4899999999999999999999999999999999999999998
Q ss_pred C
Q 000482 724 G 724 (1464)
Q Consensus 724 G 724 (1464)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 108
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.42 E-value=3.3e-11 Score=155.43 Aligned_cols=351 Identities=17% Similarity=0.225 Sum_probs=226.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCC--cEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHH-HHHHHHHHCCCCe
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWAPQMN 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~--~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~q-W~~E~~k~~P~l~ 362 (1464)
.+-.|-|+.+++-++.-...+. .-+|+-++|.|||=.|+=.+-.-... .+-+.|+||+.+|.+ -.+.|+.=+-++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-GKQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-GKQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 4677899999998876655554 46899999999998875322221122 258899999988854 3444543333544
Q ss_pred EEE--E---EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEec
Q 000482 363 VVM--Y---VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 437 (1464)
Q Consensus 363 vvv--y---~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvD 437 (1464)
|-+ . ...+..+..+... ..++.||||-|+..+.++..+- +-.+||||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 433 2 2333333333322 2468899999999998766543 34699999
Q ss_pred cccccCCcchHHHHHHHhcccc-cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000482 438 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 516 (1464)
Q Consensus 438 EAHrlKN~~Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p 516 (1464)
|=||+.-.. -..|+.++++ ++|-|||||++-.+.= -..+ +..|
T Consensus 724 EEqRFGVk~---KEkLK~Lr~~VDvLTLSATPIPRTL~M-------sm~G--------------------iRdl------ 767 (1139)
T COG1197 724 EEQRFGVKH---KEKLKELRANVDVLTLSATPIPRTLNM-------SLSG--------------------IRDL------ 767 (1139)
T ss_pred chhhcCccH---HHHHHHHhccCcEEEeeCCCCcchHHH-------HHhc--------------------chhh------
Confidence 999986433 3556666654 7888999998866421 0000 0000
Q ss_pred hhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000482 517 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 596 (1464)
Q Consensus 517 ~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~ 596 (1464)
-.-..||.....|..-..+..-.+.+
T Consensus 768 ---------SvI~TPP~~R~pV~T~V~~~d~~~ir--------------------------------------------- 793 (1139)
T COG1197 768 ---------SVIATPPEDRLPVKTFVSEYDDLLIR--------------------------------------------- 793 (1139)
T ss_pred ---------hhccCCCCCCcceEEEEecCChHHHH---------------------------------------------
Confidence 00134555544443332221111100
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc--CCeEEEEEcCCCHHHHHHHHHHHhc
Q 000482 597 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 674 (1464)
Q Consensus 597 ~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~--g~~~~ridGs~s~~eRq~~Id~Fn~ 674 (1464)
..+++++ .+|-+|....+.+..+.-+...|+.. ..++...+|.|+..+-+.++..|.+
T Consensus 794 -------------------eAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 794 -------------------EAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred -------------------HHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 1123333 35678888888888888888888754 5678899999999999999999987
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCC-CChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000482 675 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 753 (1464)
Q Consensus 675 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~K~~ 753 (1464)
+..+ +|+||.....|||+++|||+|+-+.| +--++.-|-.||++|- ++.-+.|.|+-.+ ..|-+.+.+++.
T Consensus 854 g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~---k~lT~~A~kRL~ 925 (1139)
T COG1197 854 GEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ---KALTEDAEKRLE 925 (1139)
T ss_pred CCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecCc---cccCHHHHHHHH
Confidence 5554 99999999999999999999999988 6788889999999994 4556777666542 235556666655
Q ss_pred HHHHHh--ccccccCCCHHHHHHHHHhchhhhhcccC
Q 000482 754 LEHLVV--GRLKAQNINQEELDDIIRYGSKELFADEN 788 (1464)
Q Consensus 754 L~~~Vi--g~~~~~~~~~~el~~ll~~ga~~lf~~~~ 788 (1464)
..+..- |..- +=-+.||=--|+..|++.+.
T Consensus 926 aI~~~~~LGaGf-----~lA~~DLeIRGaGNlLG~eQ 957 (1139)
T COG1197 926 AIASFTELGAGF-----KLAMHDLEIRGAGNLLGEEQ 957 (1139)
T ss_pred HHHhhhhcCchH-----HHHhcchhccccccccCccc
Confidence 444332 2210 11233444467777776654
No 109
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.42 E-value=1.1e-11 Score=143.13 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc-
Q 000482 609 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR- 687 (1464)
Q Consensus 609 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr- 687 (1464)
.-|+.++.-||+--.= ..|.|||.+.++..-.|.-+|+.-|++.|.+.|.++...|..+|+.||.+ .+.++|+|+
T Consensus 252 ~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG---~YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG---LYDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc---ceeEEEEccC
Confidence 3466666666653222 34899999999999999999999999999999999999999999999874 344677776
Q ss_pred -------------------------c---------cccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 688 -------------------------A---------GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 688 -------------------------A---------gg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
+ .+.||+++.++.||+||.|-++..|++|+||..|-|.+-.+.-|
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 1 25799999999999999999999999999999998877665544
No 110
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=99.42 E-value=5.6e-15 Score=147.24 Aligned_cols=100 Identities=25% Similarity=0.346 Sum_probs=78.9
Q ss_pred CCCccCCCCcCccchhHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHHHHHhhcc--
Q 000482 1026 SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGY-- 1103 (1464)
Q Consensus 1026 ~~~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~~~~~y~~~~~~~~w~~eeDr~LL~~i~k~Gy-- 1103 (1464)
|++++..|++|+.|++.. ...+.+|++||+.|. +| + .+|.++||++++++.||+++||||||++|+|||
T Consensus 1 ~ek~i~~IE~gE~k~~k~---~~~~~~l~~Kv~~~~-~P---~--~~L~i~y~~~~~~k~yseeEDRfLl~~~~~~G~~~ 71 (118)
T PF09111_consen 1 WEKIIKRIEKGEKKIEKR---KEQQEALRKKVEQYK-NP---W--QELKINYPPNNKKKVYSEEEDRFLLCMLYKYGYDA 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC-S-SH---H--HH---SSTSTSS-SSS-HHHHHHHHHHHHHHTTTS
T ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-CC---H--HHCeeccCCCCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 345667888888877664 456799999999997 77 5 578999998888999999999999999999999
Q ss_pred -cchHHhhhCc--------ccChHHHHHHHhcCCCCCCCC
Q 000482 1104 -GRWQAIVDDK--------DLKVQEVICQELNLPFINLPV 1134 (1464)
Q Consensus 1104 -g~We~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~ 1134 (1464)
|.||.|+++. +|+|.++..+|++.||.+|+.
T Consensus 72 ~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 72 EGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp TTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 9999988887 899999999999999988753
No 111
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=2.8e-12 Score=138.27 Aligned_cols=156 Identities=28% Similarity=0.349 Sum_probs=111.1
Q ss_pred CCCCcHHHHHHHHHHHHhhccC-CcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEc-cccHHHHHHHHHHHCCCC
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 361 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~-~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP-~sll~qW~~E~~k~~P~l 361 (1464)
..++++||.+++..+. .. .++++..++|+|||..++.++....... ..++||++| ..+..+|..++..+++..
T Consensus 6 ~~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3679999999998873 44 8899999999999998777777665543 459999999 577789999999988652
Q ss_pred ---eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc--cCCCceeEEEe
Q 000482 362 ---NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIV 436 (1464)
Q Consensus 362 ---~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~--L~~i~w~~VIv 436 (1464)
....+.+... ...+... ....++++++|++.+...... +....|+++||
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 3334444332 2222111 012348999999998776554 44557889999
Q ss_pred ccccccCC-cchH-HHHHHHhc-ccccEEeecccccC
Q 000482 437 DEGHRLKN-KDSK-LFSSLKQY-STRHRVLLTGTPLQ 470 (1464)
Q Consensus 437 DEAHrlKN-~~Sk-~~~al~~l-~~~~rLLLTGTPlq 470 (1464)
||+|.+.+ .... ....+..+ ...+++++||||..
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 99999985 3333 33344444 46788999999963
No 112
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.41 E-value=9.4e-12 Score=162.10 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=91.7
Q ss_pred cCceEEEEecchhhHHHHHHHHhh---cCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000482 625 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 701 (1464)
Q Consensus 625 ~g~KVLIFSq~~~~LdiL~~~L~~---~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 701 (1464)
.+..+|||+.....++.+.+.|.. .++.+..++|+++..+|++++..|.. +...+|++|..+..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 357899999999999999999976 57889999999999999999988854 445689999999999999999999
Q ss_pred EEecCC----CChh--------------cHHHHHHhhhhcCCCCcEEEEEEEeCCCH
Q 000482 702 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSI 740 (1464)
Q Consensus 702 Ii~D~d----WNP~--------------~d~QAigRahRiGQ~k~V~VyrLvt~~Tv 740 (1464)
|.++.. |+|. ...||.||++|. .+-.+|+|+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 996654 3333 467888888876 57889999987644
No 113
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.39 E-value=7.5e-12 Score=150.10 Aligned_cols=116 Identities=23% Similarity=0.334 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHH-hhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 609 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 609 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L-~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
.+|+..+..++.... .-.+|||.|...-...|-..| ...++.+..|+|..+..+|...+++|.. +.+-+|++|.
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~---g~IwvLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI---GKIWVLICTD 446 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc---cCeeEEEehh
Confidence 467777777776643 358999999999999999999 7889999999999999999999999976 4556999999
Q ss_pred ccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcE
Q 000482 688 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 729 (1464)
Q Consensus 688 Agg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V 729 (1464)
..+.||++..++.||+||.+-.-..++.++||.+|-|+.-..
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce
Confidence 999999999999999999999999999999999999987543
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.37 E-value=1.8e-10 Score=147.10 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000482 609 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 688 (1464)
Q Consensus 609 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrA 688 (1464)
.+++..|.+-|.....+|.++||||.....++.|.++|...|+++..++|.++..+|.+++..|.. +.+.+|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~---G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL---GEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc---CCceEEEEcCh
Confidence 567777888888888889999999999999999999999999999999999999999999999965 44568999999
Q ss_pred cccccCccCCCEEEEecC-----CCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCC
Q 000482 689 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 739 (1464)
Q Consensus 689 gg~GINL~~Ad~VIi~D~-----dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~T 739 (1464)
+++|++++.++.||++|. +-+...++|++||++|.. . -.++.|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCC
Confidence 999999999999999994 557889999999999973 2 23455555443
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.36 E-value=5.5e-12 Score=127.98 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=100.0
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEccccHH-HHHHHHHHHCC-CCeEEEEEcChhHHHHHHHhhhcC
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 383 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP~sll~-qW~~E~~k~~P-~l~vvvy~G~~~~R~~i~~~e~~~ 383 (1464)
.++++..++|+|||.+++.++..+... ..+++||++|...+. +|...+..+.. ...+.++.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999988765 445999999986654 55677777775 4677777766544432211
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhhhccc--CCCceeEEEeccccccCCcchHHH---HHHHhccc
Q 000482 384 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 458 (1464)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L--~~i~w~~VIvDEAHrlKN~~Sk~~---~al~~l~~ 458 (1464)
.....+++++||+.+....... ....|++|||||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 1246789999999887654432 344789999999999988765543 34444567
Q ss_pred ccEEeecccc
Q 000482 459 RHRVLLTGTP 468 (1464)
Q Consensus 459 ~~rLLLTGTP 468 (1464)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 116
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.36 E-value=3.8e-11 Score=152.18 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000482 609 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 688 (1464)
Q Consensus 609 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrA 688 (1464)
..|+..|..||....+ .-++|||++...-+|.|.+-|...||.+..++|..+..+|...|..|.+.. +.+|++|..
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~---~~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV---VNLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC---ceEEEehhh
Confidence 4577888888887766 569999999999999999999999999999999999999999999997644 459999999
Q ss_pred cccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 689 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 689 gg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
.+.||++.....||+||.+---..+..|.||.+|.|.+- .-|-|++.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999877788899999999988777 45556655
No 117
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=1.5e-10 Score=147.82 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..|.+.+..+...|..|||||+++...+.|..+|...|+++..|++ ...+|+..|-.|... ...++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~---~g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ---KGAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC---CCeEEEecc
Confidence 356999999999999999999999999999999999999999999999997 577999999999543 335899999
Q ss_pred ccccccCccCCC--------EEEEecCCCChhcHHHHHHhhhhcCCCCcEE
Q 000482 688 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 688 Agg~GINL~~Ad--------~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 730 (1464)
.+|+|+++.-.+ +||.++.+-+...+.|++||++|.|..-...
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 999999998433 4488899999999999999999999886653
No 118
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.31 E-value=3.8e-11 Score=155.78 Aligned_cols=313 Identities=16% Similarity=0.165 Sum_probs=211.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
...||-|.++|+-+ ..|..+++-..+|.||++.-- |=.++ -.+-+|||.|+ ||+..-..-+.. .++...
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQ--lPA~l--~~gitvVISPL~SLm~DQv~~L~~--~~I~a~ 332 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQ--LPALL--LGGVTVVISPLISLMQDQVTHLSK--KGIPAC 332 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEee--ccccc--cCCceEEeccHHHHHHHHHHhhhh--cCccee
Confidence 46999999999743 688999999999999997531 00011 12378999996 777555444522 356777
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccC---CC----ceeEEEec
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK---PI----KWQCMIVD 437 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~---~i----~w~~VIvD 437 (1464)
.+.+..........+.... ......+++-.|.|.+......+. .. .-.++|||
T Consensus 333 ~L~s~q~~~~~~~i~q~l~--------------------~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKLA--------------------NGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred eccccccHHHHHHHHHHHh--------------------CCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 7777666654333222110 112467899999999876433221 11 25789999
Q ss_pred cccccCCcc-------hHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000482 438 EGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 510 (1464)
Q Consensus 438 EAHrlKN~~-------Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 510 (1464)
|||-..... .++......+..-..|.||||--..--.++...|++-+|..|.+.
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------- 453 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------- 453 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-------------------
Confidence 999875432 233333334444467899999655555555555555555432211
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 590 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~ 590 (1464)
..++.-.+.|....+ ...+..++...+
T Consensus 454 ------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~~----------- 480 (941)
T KOG0351|consen 454 ------------------FNRPNLKYEVSPKTD------------------------KDALLDILEESK----------- 480 (941)
T ss_pred ------------------CCCCCceEEEEeccC------------------------ccchHHHHHHhh-----------
Confidence 111111222222111 011111111111
Q ss_pred CCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHH
Q 000482 591 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 670 (1464)
Q Consensus 591 ~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id 670 (1464)
....+.-.||||....+.+.+...|...|++..-++++++..+|+.+-.
T Consensus 481 -------------------------------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 481 -------------------------------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQK 529 (941)
T ss_pred -------------------------------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence 1223567999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEE
Q 000482 671 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 734 (1464)
Q Consensus 671 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 734 (1464)
.|..+. +.++++|=|.|.|||-+++..||+|..+-+-.-|-|..|||+|-|+...+..|+=
T Consensus 530 ~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 530 AWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred HHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecc
Confidence 998744 5689999999999999999999999999999999999999999999987665543
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.30 E-value=1.5e-09 Score=139.47 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000482 609 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 688 (1464)
Q Consensus 609 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrA 688 (1464)
.+++..|...|......|.+|||||.....++.|..+|...|+++..++|.++..+|..++..|.. +.+.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~---g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc---CCceEEEEeCH
Confidence 456777888888888889999999999999999999999999999999999999999999999965 34568999999
Q ss_pred cccccCccCCCEEEEecCC-----CChhcHHHHHHhhhhcCCCCcEEEEEEEeC
Q 000482 689 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITR 737 (1464)
Q Consensus 689 gg~GINL~~Ad~VIi~D~d-----WNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 737 (1464)
++.|++++.+++||++|.+ -++..++|++||++|- . .-.++.|++.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999974 5889999999999994 2 3345556654
No 120
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.29 E-value=8e-12 Score=116.13 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.5
Q ss_pred HHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhh
Q 000482 641 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 720 (1464)
Q Consensus 641 iL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRa 720 (1464)
.|.++|...++.+..++|.++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4678888889999999999999999999999987554 5899999999999999999999999999999999999999
Q ss_pred hhcC
Q 000482 721 HRLG 724 (1464)
Q Consensus 721 hRiG 724 (1464)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 121
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.28 E-value=2.1e-10 Score=144.10 Aligned_cols=310 Identities=18% Similarity=0.233 Sum_probs=181.3
Q ss_pred HhhccCCcEEEEecCCCchHHHHHHHHHHHHhC---------CCCcEEEEEccccH-----HHHHHHHHHHCCCCeEEEE
Q 000482 301 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMY 366 (1464)
Q Consensus 301 ~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~---------~~~p~LIVvP~sll-----~qW~~E~~k~~P~l~vvvy 366 (1464)
..|..+.|.|++..+|+|||..|...+..++++ +.-+++-|+|...| .+|..-|.-| ++.|..+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 356789999999999999999986666655543 11288999995433 3455555544 6889999
Q ss_pred EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh-------hhcccCCCceeEEEeccc
Q 000482 367 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASLKPIKWQCMIVDEG 439 (1464)
Q Consensus 367 ~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~-------d~~~L~~i~w~~VIvDEA 439 (1464)
+|+...-+. .....+|+|||+|...- +...+. ...+|||||.
T Consensus 199 TGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEV 247 (1230)
T KOG0952|consen 199 TGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEV 247 (1230)
T ss_pred cCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeee
Confidence 998654211 12467899999987521 111222 2468999999
Q ss_pred cccCCcch-----HHHHHHHhc----ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000482 440 HRLKNKDS-----KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 510 (1464)
Q Consensus 440 HrlKN~~S-----k~~~al~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 510 (1464)
|-|..... ...+.++.. +.-+.++||||- + |+.|+. .||..+.....-.|...|..
T Consensus 248 HlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl-P-N~eDvA---~fL~vn~~~glfsFd~~yRP---------- 312 (1230)
T KOG0952|consen 248 HLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL-P-NYEDVA---RFLRVNPYAGLFSFDQRYRP---------- 312 (1230)
T ss_pred hhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC-C-CHHHHH---HHhcCCCccceeeecccccc----------
Confidence 99977544 333444333 223568999993 2 344433 45544443333333333321
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCC--HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 588 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls--~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~ 588 (1464)
.-| ....+-+.-. ..|.+..
T Consensus 313 ------vpL--------------~~~~iG~k~~~~~~~~~~~-------------------------------------- 334 (1230)
T KOG0952|consen 313 ------VPL--------------TQGFIGIKGKKNRQQKKNI-------------------------------------- 334 (1230)
T ss_pred ------cce--------------eeeEEeeecccchhhhhhH--------------------------------------
Confidence 000 0000000000 0000000
Q ss_pred cCCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHh----hcCCe------------
Q 000482 589 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQ------------ 652 (1464)
Q Consensus 589 ~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~----~~g~~------------ 652 (1464)
..+++..+. ++..+||.|+||+......--.+..|. ..|..
T Consensus 335 -------------------d~~~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 335 -------------------DEVCYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred -------------------HHHHHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 011222222 233468889999887554333333332 22222
Q ss_pred -------EEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhc----------HHH
Q 000482 653 -------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA----------DLQ 715 (1464)
Q Consensus 653 -------~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~----------d~Q 715 (1464)
...-+.++.-.+|+-.-+.|..+.- -+|++|...+.|+||++--.+|-=..-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i---~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGHI---KVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCCc---eEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 2223456667788888888876444 38999999999999998766665555566655 589
Q ss_pred HHHhhhhcCCCCcEEEEEEEeCCCHHH
Q 000482 716 AMARAHRLGQTNKVMIFRLITRGSIEE 742 (1464)
Q Consensus 716 AigRahRiGQ~k~V~VyrLvt~~TvEE 742 (1464)
.+|||+|.+=.+.-..+.+.+.++++-
T Consensus 469 ifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 469 IFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHhccCCCCCCCCceEEEEecccHHHH
Confidence 999999987666555555555555443
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=1.5e-09 Score=138.81 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|...+.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++...... -..+|.. ++..+ .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~-Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQ-EAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhh-HHHHHHh--cCCCC--cEEEeec
Confidence 45789999999999999999999999999999999999999999999999874322 2344432 33444 4789999
Q ss_pred ccccccCccCC--------CEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHH
Q 000482 688 AGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 747 (1464)
Q Consensus 688 Agg~GINL~~A--------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~ 747 (1464)
.+|+|.++.-. =+||.-..+-|...+.|..||++|.|..-....|. |+|..++.+
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 99999887533 27888899999999999999999999887655442 345555443
No 123
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.24 E-value=1e-10 Score=135.74 Aligned_cols=217 Identities=25% Similarity=0.284 Sum_probs=132.7
Q ss_pred eeeeecccCCHHHHHHHHHHHHHHHHHHHh---cCC--c----------hhhHHHHHHHHHHHhCCccccc-CCCCCccc
Q 000482 534 KELILRVELSSKQKEYYKAILTRNYQILTR---RGG--A----------QISLINVVMELRKLCCHPYMLE-GVEPDIED 597 (1464)
Q Consensus 534 ~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~---~~~--~----------~~~l~nil~~LRk~c~HP~L~~-~~e~~~~~ 597 (1464)
.++.++++|+..|++.|+.++.-.+..+.+ ... . ...+..++.+|+.+|+||+|+- ..-+.-..
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 467899999999999999998876655432 111 1 1334556778999999999862 33333333
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHH-----HhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHH---
Q 000482 598 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 669 (1464)
Q Consensus 598 ~~~~~~~li~~SgKl~~L~kLL~~l-----~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~I--- 669 (1464)
..+....+...|+|+.+|..+|..+ ...+.++||.++..+++|+|+.+|..+++.|.|++|..-..+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4455678889999999999999999 66788999999999999999999999999999999986554443322
Q ss_pred ---------HHHhccCC-CceEEEeecccccc----ccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEE
Q 000482 670 ---------DRFNAKNS-SRFCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 735 (1464)
Q Consensus 670 ---------d~Fn~~~s-~~~vfLlSTrAgg~----GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLv 735 (1464)
.......+ ...++|++|.-... .++-...|.||-||+.+++....-..-|.+.-.+ +.+-|++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv 242 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLV 242 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEe
Confidence 11111222 33445555554433 1333467999999999999886544444433222 889999999
Q ss_pred eCCCHHHHHHHHHHHH
Q 000482 736 TRGSIEERMMQMTKKK 751 (1464)
Q Consensus 736 t~~TvEE~I~~~a~~K 751 (1464)
..+|+|--++..-...
T Consensus 243 ~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 243 PSNSIEHIELCFPKSS 258 (297)
T ss_dssp ETTSHHHHHHHHTTTS
T ss_pred eCCCHHHHHHHccCcc
Confidence 9999999887766544
No 124
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.23 E-value=3.4e-10 Score=150.75 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=88.4
Q ss_pred cCceEEEEecchhhHHHHHHHHhhcC---CeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000482 625 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 701 (1464)
Q Consensus 625 ~g~KVLIFSq~~~~LdiL~~~L~~~g---~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 701 (1464)
....+|||......++.+.+.|...+ +.+..++|+++.++|++++..+ +. ..+|++|..+..||+++.+++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SG-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CC-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885433 22 3479999999999999999999
Q ss_pred EEecCC----C--------------ChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHH
Q 000482 702 IIYDSD----W--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 742 (1464)
Q Consensus 702 Ii~D~d----W--------------NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE 742 (1464)
|-++.. + +-....||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 987621 2 3357899999999987 667899998765543
No 125
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.23 E-value=5.2e-10 Score=145.64 Aligned_cols=355 Identities=16% Similarity=0.147 Sum_probs=207.5
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEcc-ccHHHHHHHHHHHCCCC
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPL-STLRNWEREFATWAPQM 361 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~---~~p~LIVvP~-sll~qW~~E~~k~~P~l 361 (1464)
...+++|..++++....+..+.-++|..+||.|||..++.++.+..... ...++.|.|. +++.+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468999999999877766666899999999999999998888887763 3478888886 45566777788877554
Q ss_pred eEEEE--EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc------cCCCceeE
Q 000482 362 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS------LKPIKWQC 433 (1464)
Q Consensus 362 ~vvvy--~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~------L~~i~w~~ 433 (1464)
.+..- +|.....-. ...+.. ..............-+.+.+++...+...... +..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~-~~~~~~-----------~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLL-LEPDQD-----------ILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhh-hccccc-----------cceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 44443 454433221 111000 00000000001112223333333222221110 22244568
Q ss_pred EEeccccccCCc-chHHHHHHHhc-c--cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000482 434 MIVDEGHRLKNK-DSKLFSSLKQY-S--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 509 (1464)
Q Consensus 434 VIvDEAHrlKN~-~Sk~~~al~~l-~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 509 (1464)
+|+||+|-+--. ......++..+ . ....|++|||+ | ..|.+ .
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATl----------------P------~~~~~------------~ 387 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATL----------------P------PFLKE------------K 387 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCC----------------C------HHHHH------------H
Confidence 999999998665 33333333222 2 45789999996 0 01111 1
Q ss_pred HHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000482 510 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 589 (1464)
Q Consensus 510 L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~ 589 (1464)
|...+.. ... + ..+.+ .+ ..++.|.+..
T Consensus 388 l~~~~~~----~~~--~--~~~~~-----~~---------------------------------------~~~~e~~~~~ 415 (733)
T COG1203 388 LKKALGK----GRE--V--VENAK-----FC---------------------------------------PKEDEPGLKR 415 (733)
T ss_pred HHHHHhc----ccc--e--ecccc-----cc---------------------------------------cccccccccc
Confidence 1111100 000 0 00000 00 0001111110
Q ss_pred CCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHH
Q 000482 590 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 669 (1464)
Q Consensus 590 ~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~I 669 (1464)
........ ... ..+...+..-...|.+|+|-++.+..+-.+...|+..+.+++.+++......|.+.+
T Consensus 416 ~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVED-----------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhhh-----------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 00000000 000 122223333445689999999999999999999998888899999999999999998
Q ss_pred HHHhcc-CCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcC--CCCcEEEEEEEeCCCHHHHHHH
Q 000482 670 DRFNAK-NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMMQ 746 (1464)
Q Consensus 670 d~Fn~~-~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiG--Q~k~V~VyrLvt~~TvEE~I~~ 746 (1464)
+...+- ..+...++|+|++...|+|+. .|.+|= |+ =-....+||.||++|-| ....+.||...-......+.++
T Consensus 484 ~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-e~-aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 484 RELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-EL-APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred HHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-cC-CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 876532 111223799999999999987 666653 22 23567899999999999 5667888888777777777777
Q ss_pred HHHHHHH
Q 000482 747 MTKKKMV 753 (1464)
Q Consensus 747 ~a~~K~~ 753 (1464)
....++.
T Consensus 561 ~~~~~~~ 567 (733)
T COG1203 561 KLEKKLK 567 (733)
T ss_pred cchhhhc
Confidence 6666554
No 126
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.21 E-value=7.1e-10 Score=147.30 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=87.5
Q ss_pred cCceEEEEecchhhHHHHHHHHhhcCCe---EEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000482 625 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 701 (1464)
Q Consensus 625 ~g~KVLIFSq~~~~LdiL~~~L~~~g~~---~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 701 (1464)
....+|||+.....++.+.+.|...+++ +.-++|+++..+|..+++.+ +...+|++|..++.||+++.+++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999887765 56789999999999886542 334589999999999999999999
Q ss_pred EEec---------------CCCCh---hcHHHHHHhhhhcCCCCcEEEEEEEeCCCHH
Q 000482 702 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 741 (1464)
Q Consensus 702 Ii~D---------------~dWNP---~~d~QAigRahRiGQ~k~V~VyrLvt~~TvE 741 (1464)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9874 22223 5688888888887 467788999876543
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=2e-09 Score=134.62 Aligned_cols=120 Identities=20% Similarity=0.187 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..+.+-+.++.+.|..|||.+..+..-+.|...|...|+++..+...... .-..+|.+ ++..+ .+.|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~-~EA~IIa~--AG~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA-EEARIIAE--AGKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH-hHHHHHHh--cCCCC--cEEEEec
Confidence 4568999999999999999999999999999999999999999999999987443 33445543 33333 4789999
Q ss_pred ccccccCccCC---------------CEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 688 AGGLGINLATA---------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 688 Agg~GINL~~A---------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
.+|.|.++.-. =+||.-..+=|-..+.|..||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999887632 2788888999999999999999999988766554
No 128
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.3e-10 Score=130.39 Aligned_cols=310 Identities=19% Similarity=0.283 Sum_probs=197.0
Q ss_pred cHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC--CCcEEEEEccccHHHH-HHHHHHHCCCC--eE
Q 000482 289 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNW-EREFATWAPQM--NV 363 (1464)
Q Consensus 289 rpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~--~~p~LIVvP~sll~qW-~~E~~k~~P~l--~v 363 (1464)
..-|..|+-= ..+|.+++.-...|+|||.+-...+....... ..-+||++|..-|.+- ..-...+.+.. ++
T Consensus 50 SaIQqraI~p----~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v 125 (397)
T KOG0327|consen 50 SAIQQRAILP----CIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSV 125 (397)
T ss_pred hHHHhccccc----cccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceee
Confidence 3445555422 25678999999999999988433333332221 1267999998777543 33444555444 44
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh--hhcccCCCceeEEEeccccc
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGHR 441 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~--d~~~L~~i~w~~VIvDEAHr 441 (1464)
....|...-+..-. .......+|++.|...+.. +...|..-...+.|+|||..
T Consensus 126 ~~~igg~~~~~~~~-------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 126 HACIGGTNVRREDQ-------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred eeecCcccchhhhh-------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 44444332221000 0112456888888865532 22355555678999999998
Q ss_pred cCCc--chHHHHHHHhcccc-cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 000482 442 LKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 518 (1464)
Q Consensus 442 lKN~--~Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p~~ 518 (1464)
.+.. .-+++..+..+..+ ..+++|||- +.++. ++ -+.|+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~----p~~vl-------------------------------~v---t~~f~ 222 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATM----PSDVL-------------------------------EV---TKKFM 222 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccC----cHHHH-------------------------------HH---HHHhc
Confidence 7543 44566666666544 457788883 00000 00 00000
Q ss_pred HHHHHhhHhhcCCCceeeeecccCC-HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000482 519 LRRVKKDVMKELPPKKELILRVELS-SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 597 (1464)
Q Consensus 519 LRR~K~dv~~~LPpk~e~iv~v~ls-~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~ 597 (1464)
- + |....+-..++| +-++.+|-..
T Consensus 223 ~-----~------pv~i~vkk~~ltl~gikq~~i~v-------------------------------------------- 247 (397)
T KOG0327|consen 223 R-----E------PVRILVKKDELTLEGIKQFYINV-------------------------------------------- 247 (397)
T ss_pred c-----C------ceEEEecchhhhhhheeeeeeec--------------------------------------------
Confidence 0 0 000000000111 0011111100
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCC
Q 000482 598 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 677 (1464)
Q Consensus 598 ~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s 677 (1464)
....|+..|..+.. .-...+||++..+-++.|.+.|..+|+....++|.+...+|..++..|+.+.+
T Consensus 248 ---------~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gss 314 (397)
T KOG0327|consen 248 ---------EKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSS 314 (397)
T ss_pred ---------cccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCc
Confidence 01116677777766 33478999999999999999999999999999999999999999999988666
Q ss_pred CceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 678 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 678 ~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
. +|++|...+.||+++.++.||+||.|-|..+|+.++||++|.|-+- ....++++.
T Consensus 315 r---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 315 R---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred e---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 4 8999999999999999999999999999999999999999999663 333556554
No 129
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=2.5e-10 Score=131.77 Aligned_cols=311 Identities=18% Similarity=0.253 Sum_probs=206.3
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhC-CCC-cEEEEEccccH-HH---HHHHHHHHCC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-RIS-PHLVVAPLSTL-RN---WEREFATWAP 359 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~l~~~-~~~-p~LIVvP~sll-~q---W~~E~~k~~P 359 (1464)
+..|.|...++-+ ..+...+-..=+|+|||..-+ -.+..|... ..+ +.||+.|..-| .| ...++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 4677777776654 455666666779999997743 334444332 223 89999997444 34 455556655
Q ss_pred CCeEE-EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCceeEEEe
Q 000482 360 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 436 (1464)
Q Consensus 360 ~l~vv-vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~VIv 436 (1464)
+++.. .|.|++.+.+.+.- ..+.|+|++|...+..-.. .|.--...|||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 56666 45555544332211 1357899988877643211 133334578999
Q ss_pred ccccccCC--cchHHHHHHHhcccc-cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000482 437 DEGHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 513 (1464)
Q Consensus 437 DEAHrlKN--~~Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~ 513 (1464)
|||.+|-. ..-++.+.+..++.. ..+++|||- .+.+. +|.. .=
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~lv------------------~fak---------------aG 216 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDLV------------------DFAK---------------AG 216 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhhH------------------HHHH---------------cc
Confidence 99999954 456788888888643 578999993 11111 1100 00
Q ss_pred hhhhhHHHHHhhHhhcCCCceeeeeccc--CCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000482 514 LAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 591 (1464)
Q Consensus 514 L~p~~LRR~K~dv~~~LPpk~e~iv~v~--ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~ 591 (1464)
| .||.... +.|+ +++ ..+++
T Consensus 217 l---------------~~p~lVR-ldvetkise------------------------------~lk~~------------ 238 (529)
T KOG0337|consen 217 L---------------VPPVLVR-LDVETKISE------------------------------LLKVR------------ 238 (529)
T ss_pred C---------------CCCceEE-eehhhhcch------------------------------hhhhh------------
Confidence 0 1111111 1110 010 00011
Q ss_pred CCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHH
Q 000482 592 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 671 (1464)
Q Consensus 592 e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~ 671 (1464)
...+....|...|..++..... .++.+||+......+++...|...|+...-|.|+++...|..-+.+
T Consensus 239 -----------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 239 -----------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred -----------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 1112334567777777666543 4589999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 672 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 672 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
|+.... -+|++|+.+..|++++-.+.||.||.+-.+..+..|.||+.|-|.+- ..|-||+..
T Consensus 307 F~~~k~---~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 307 FRGRKT---SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred ccCCcc---ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 976544 48999999999999999999999999999999999999999988663 456666554
No 130
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.13 E-value=8.4e-10 Score=121.67 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=105.1
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhC--CC-CcEEEEEcc-ccHHHHHHHHHHHCC--
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE--RI-SPHLVVAPL-STLRNWEREFATWAP-- 359 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~--~~-~p~LIVvP~-sll~qW~~E~~k~~P-- 359 (1464)
.+++||.++++-+ .++.++++..++|.|||++. +.++..+... .. ..+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5899999999776 34889999999999999985 4445555544 23 379999995 677889999888864
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCceeEEEec
Q 000482 360 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 437 (1464)
Q Consensus 360 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIvD 437 (1464)
+.++..++|..........+ ....+|+|+|.+.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 57777888876554322211 135689999988765421 11222356899999
Q ss_pred cccccCCcc-hH-HHHHHHhcc-cccEEeeccccc
Q 000482 438 EGHRLKNKD-SK-LFSSLKQYS-TRHRVLLTGTPL 469 (1464)
Q Consensus 438 EAHrlKN~~-Sk-~~~al~~l~-~~~rLLLTGTPl 469 (1464)
|+|.+.+.. .. +...+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986543 22 223333444 345789999984
No 131
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.12 E-value=5.6e-10 Score=118.87 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcc-ccHHHHHHHHHHHCC--CCeEEE
Q 000482 290 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--QMNVVM 365 (1464)
Q Consensus 290 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~-sll~qW~~E~~k~~P--~l~vvv 365 (1464)
|+|.+++.-+ ..+.+.++...+|+|||..++..+....... ...+||++|. +++.+-..++..++. ..++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999998776 3678899999999999999876665544443 3499999995 677888889988884 468888
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc--cCCCceeEEEeccccccC
Q 000482 366 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 443 (1464)
Q Consensus 366 y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~--L~~i~w~~VIvDEAHrlK 443 (1464)
++|........... .....+|+|+|++.+...... +.-...++||+||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 87765422111110 013578999999999765443 122347899999999997
Q ss_pred Cc--chHHHHHHHhc---ccccEEeecccccCCCHH
Q 000482 444 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 474 (1464)
Q Consensus 444 N~--~Sk~~~al~~l---~~~~rLLLTGTPlqNnl~ 474 (1464)
.. .......+..+ ...+.+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22333333333 2356899999995 4443
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=4.9e-09 Score=134.05 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=99.2
Q ss_pred hhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000482 607 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 686 (1464)
Q Consensus 607 ~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlST 686 (1464)
....|...+.+-+..+.+.|..|||-+..+..-+.|..+|...|+++..+..... +.-..+|. +++..+ .+.|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEec
Confidence 3467999999999999999999999999999999999999999999988887643 22334444 344444 468999
Q ss_pred cccccccCcc-------------------------------------CCCEEEEecCCCChhcHHHHHHhhhhcCCCCcE
Q 000482 687 RAGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 729 (1464)
Q Consensus 687 rAgg~GINL~-------------------------------------~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V 729 (1464)
..+|+|.|+. ..=+||.-..+=|-..+.|..||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998874 123789899999999999999999999988766
Q ss_pred EEE
Q 000482 730 MIF 732 (1464)
Q Consensus 730 ~Vy 732 (1464)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 554
No 133
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.10 E-value=2.5e-09 Score=121.01 Aligned_cols=297 Identities=17% Similarity=0.144 Sum_probs=189.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
.+.||.|++++|-. ..+..++|...+|-||++..- +-.|.. .+-.|||||+ |++..-.-.++...-+...+
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyq--lpal~a--dg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQ--LPALCA--DGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhh--hhHHhc--CCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 36899999999876 678899999999999997531 111222 3578999996 77766666666665332222
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc-------cCCCceeEEEec
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------LKPIKWQCMIVD 437 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~-------L~~i~w~~VIvD 437 (1464)
--..++..-. ..+. .-.+...+|.++.+|++.+.+...+ +..-.|.+|-||
T Consensus 165 nansske~~k---~v~~-------------------~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAK---RVEA-------------------AITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHH---HHHH-------------------HHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 2222222111 1111 1112346788999999887654333 333467899999
Q ss_pred cccccCC-------cchHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000482 438 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 510 (1464)
Q Consensus 438 EAHrlKN-------~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 510 (1464)
|+|...- ..+.+.-.-+.|+....++||||...+-+.+.-.+|..-..
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------------------------- 277 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------------------------- 277 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-------------------------
Confidence 9998643 33334444456677778999999755555444433322100
Q ss_pred HHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000482 511 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 590 (1464)
Q Consensus 511 ~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~ 590 (1464)
| .+|.-.|.|-|...
T Consensus 278 ------~-----------------------------------------------------------tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 278 ------F-----------------------------------------------------------TFRAGFNRPNLKYE 292 (695)
T ss_pred ------h-----------------------------------------------------------eeecccCCCCceeE
Confidence 0 00011111222111
Q ss_pred CCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHH
Q 000482 591 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 670 (1464)
Q Consensus 591 ~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id 670 (1464)
+...+...++ -+.-+.+++..-. .|..-||||-...-.+.+...|+..|+....++..+.+++|.-+-.
T Consensus 293 v~qkp~n~dd----------~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNEDD----------CIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChHH----------HHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 1111111111 1111223332211 3778899999999999999999999999999999999999888877
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHH
Q 000482 671 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 716 (1464)
Q Consensus 671 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QA 716 (1464)
.+-+ +.+.+++.|-|.|.||+-+.+..||+-..+-+-.++-||
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqa 404 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQA 404 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHH
Confidence 7754 455689999999999999999999999999999999994
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.07 E-value=3.7e-09 Score=140.30 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcccc-HHHHH-HHHH---HHC
Q 000482 284 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWE-REFA---TWA 358 (1464)
Q Consensus 284 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sl-l~qW~-~E~~---k~~ 358 (1464)
.|.+.||+|.+.+..+...+..+..+++-..+|+|||+..+.-+..... ...+++|.||+.. ..||. +++. +.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999998888778888888899999999999987665544433 3359999999644 56764 3444 443
Q ss_pred C-CCeEEEEEcCh
Q 000482 359 P-QMNVVMYVGTS 370 (1464)
Q Consensus 359 P-~l~vvvy~G~~ 370 (1464)
+ .+++++..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47788887765
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=5.8e-08 Score=123.21 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..+.+-+..+.+.|..|||.|..+...+.|..+|...|+++..++..... .-..+|. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e-~EA~IIa--~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA-REAEIIA--KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh-hHHHHHH--hCCCCC--eEEEecc
Confidence 4578888999999999999999999999999999999999999999999986432 2233443 444444 5789999
Q ss_pred ccccccCccCCC--------EEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHH
Q 000482 688 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 747 (1464)
Q Consensus 688 Agg~GINL~~Ad--------~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~ 747 (1464)
.+|+|.++.-.. +||....+=|-..+.|..||++|.|..-....|. |+|..++.+
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~ 545 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRR 545 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHH
Confidence 999999987543 8999999999999999999999999887665542 345555443
No 136
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.99 E-value=2.5e-07 Score=110.39 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=105.9
Q ss_pred HHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCC
Q 000482 619 MVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATA 698 (1464)
Q Consensus 619 L~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~A 698 (1464)
++...+.|.||||-+=..+|.+-|.+||...|+++..++..+..-+|..+|..... +.|-+|+....+-+||+|+.+
T Consensus 439 I~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~---G~~DvLVGINLLREGLDiPEV 515 (663)
T COG0556 439 IRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINLLREGLDLPEV 515 (663)
T ss_pred HHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc---CCccEEEeehhhhccCCCcce
Confidence 34445679999999999999999999999999999999999999999999999976 445589999999999999999
Q ss_pred CEEEEecCCC-----ChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 000482 699 DTVIIYDSDW-----NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 750 (1464)
Q Consensus 699 d~VIi~D~dW-----NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~~a~~ 750 (1464)
..|.|+|-|- +-...+|-||||-|--.. .|..|-=...+|+.+.|-+..++
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 9999999884 778899999999995433 44444444445666666654443
No 137
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.97 E-value=4.1e-08 Score=113.51 Aligned_cols=318 Identities=15% Similarity=0.161 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEEEE--
Q 000482 290 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMY-- 366 (1464)
Q Consensus 290 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy-- 366 (1464)
|-|..+++-+. ..+..+.+.+.+|.||++..- |-.|...+ -++||.|+ .++..-.+.+.+.- |-+-
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~g--ITIV~SPLiALIkDQiDHL~~LK----Vp~~SL 91 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHGG--ITIVISPLIALIKDQIDHLKRLK----VPCESL 91 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhCC--eEEEehHHHHHHHHHHHHHHhcC----CchhHh
Confidence 67888887653 567789999999999997531 22223333 67888886 55555566665432 2111
Q ss_pred E--cChhHHHH-HHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-----hccc-CCCceeEEEec
Q 000482 367 V--GTSQARNI-IREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-----SASL-KPIKWQCMIVD 437 (1464)
Q Consensus 367 ~--G~~~~R~~-i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d-----~~~L-~~i~w~~VIvD 437 (1464)
. -+..+|.. +...+ .......++-+|.++...+ ...| +.-...+++||
T Consensus 92 NSKlSt~ER~ri~~DL~-----------------------~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 92 NSKLSTVERSRIMGDLA-----------------------KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVD 148 (641)
T ss_pred cchhhHHHHHHHHHHHH-----------------------hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEec
Confidence 1 11222221 22211 1123344667777766443 1222 22245799999
Q ss_pred cccccCCcc------hHHHHHHHhc-ccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHH-HhhhhhHHHHHH
Q 000482 438 EGHRLKNKD------SKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE-FKDINQEEQISR 509 (1464)
Q Consensus 438 EAHrlKN~~------Sk~~~al~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~-f~~~~~~~~i~~ 509 (1464)
|||-..-.. -...-+|+.. ..-..+.||||--..--+|+|..|++-.|-..-.-..|... |-+
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD--------- 219 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYD--------- 219 (641)
T ss_pred hhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHH---------
Confidence 999874322 1222333332 23345789999866667788888887666321111111110 000
Q ss_pred HHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000482 510 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 589 (1464)
Q Consensus 510 L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~ 589 (1464)
..|+.+++..+..| ...-+++...|--+.
T Consensus 220 --------------------------------------~~~K~~I~D~~~~L-------------aDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 220 --------------------------------------NHMKSFITDCLTVL-------------ADFSSSNLGKHEKAS 248 (641)
T ss_pred --------------------------------------HHHHHHhhhHhHhH-------------HHHHHHhcCChhhhh
Confidence 01222222211111 111222222221110
Q ss_pred CCCCCccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHH
Q 000482 590 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 669 (1464)
Q Consensus 590 ~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~I 669 (1464)
... +..-.--||||......+.+.-.|..+|++..-++.+....+|..+-
T Consensus 249 ~~~------------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 249 QNK------------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred cCC------------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 000 00112469999999999999999999999999999999999999999
Q ss_pred HHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEE
Q 000482 670 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 734 (1464)
Q Consensus 670 d~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 734 (1464)
+.+-.++.. +|+.|-..|.|++=+++..||+++++-|-+-|-|--||++|-|-..-++.|+=
T Consensus 299 e~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 299 EKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 999876665 78999999999999999999999999999999999999999998888877753
No 138
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.85 E-value=5.6e-10 Score=121.47 Aligned_cols=62 Identities=39% Similarity=0.867 Sum_probs=55.2
Q ss_pred hhhhhhhcccccccccccccCCCC---eEecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCC
Q 000482 41 EKFERIVRIDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 102 (1464)
Q Consensus 41 ~~~~~~~~~d~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 102 (1464)
..++..-|.+-.+.+|.+||.+.+ ||+||.|+|+|||+||.||+...|+|.|.|..|...+.
T Consensus 269 ~avk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 269 AAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred HHHHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 456677788889999999998754 99999999999999999999999999999999986543
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.79 E-value=2e-07 Score=119.20 Aligned_cols=72 Identities=29% Similarity=0.486 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE-----ecCC---C---ChhcHHHHHH
Q 000482 650 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 718 (1464)
Q Consensus 650 g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi-----~D~d---W---NP~~d~QAig 718 (1464)
.|.+..-+.+++..+|...-+.|.+ +.+-+|+||...+-|+||++ ++||| |||. | +|...+|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~---g~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD---GHIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc---CceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4667888899999999999999965 44458999999999999985 57776 6664 4 6899999999
Q ss_pred hhhhcCC
Q 000482 719 RAHRLGQ 725 (1464)
Q Consensus 719 RahRiGQ 725 (1464)
|++|.+-
T Consensus 683 ragrp~~ 689 (1674)
T KOG0951|consen 683 RAGRPQY 689 (1674)
T ss_pred hcCCCcc
Confidence 9999763
No 140
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.78 E-value=4.4e-08 Score=112.18 Aligned_cols=238 Identities=20% Similarity=0.255 Sum_probs=145.2
Q ss_pred CCCC-CCCCCCCcHHHHHHHHHHHHhhc------cCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEccccHHH
Q 000482 278 HSPE-FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRN 349 (1464)
Q Consensus 278 ~~P~-~~~g~~LrpyQlegvnwL~~~~~------~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP~sll~q 349 (1464)
..|. .+..+.|.+-|+++|-+..+.+. .+.+.+|+|.+|.||--|+.++|...+..+.. ++-|-+...+...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 4444 34568899999999998866665 37788999999999999999999887766655 4444455666666
Q ss_pred HHHHHHHHCCC-CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-----
Q 000482 350 WEREFATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----- 423 (1464)
Q Consensus 350 W~~E~~k~~P~-l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~----- 423 (1464)
-.+.+....-. +.+..+.. + + .+ .....+..|+++||.++....
T Consensus 107 a~RDl~DIG~~~i~v~~l~~------------~--~----------~~------~~~~~~~GvlF~TYs~L~~~~~~~~~ 156 (303)
T PF13872_consen 107 AERDLRDIGADNIPVHPLNK------------F--K----------YG------DIIRLKEGVLFSTYSTLISESQSGGK 156 (303)
T ss_pred HHHHHHHhCCCcccceechh------------h--c----------cC------cCCCCCCCccchhHHHHHhHHhccCC
Confidence 67777654411 11111110 0 0 00 011246679999999997663
Q ss_pred --cccCC-Cce------eEEEeccccccCCcch------HHHHHHHhc----ccccEEeecccccCCCHHHHHHHHH--h
Q 000482 424 --ASLKP-IKW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMH--F 482 (1464)
Q Consensus 424 --~~L~~-i~w------~~VIvDEAHrlKN~~S------k~~~al~~l----~~~~rLLLTGTPlqNnl~EL~sLL~--f 482 (1464)
..|.. +.| .+||+||||+.||..+ +...++..+ ...+.+..|||.... +..|--+-+ +
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGL 235 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGL 235 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceeeeeeeccc
Confidence 22222 234 3899999999999654 555665544 344678899998532 222211111 1
Q ss_pred hc-CCCCCChHHHHHHHhhhhhHHHHHHHHHhh--hhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHH
Q 000482 483 LD-AGKFGSLEEFQEEFKDINQEEQISRLHRML--APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 552 (1464)
Q Consensus 483 L~-p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L--~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~ 552 (1464)
-. ...|.++.+|.+....-. ....+-+...| ...+++|.. ++-.....++.++|++.|.++|..
T Consensus 236 WG~gtpf~~~~~f~~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 236 WGPGTPFPDFDDFLEAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred cCCCCCCCCHHHHHHHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 11 124677888877765421 11111121111 122333422 345567788999999999999964
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.74 E-value=1.1e-06 Score=111.83 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=89.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcccc-HHHHHHHHHHHCC-----
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAP----- 359 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~k~~P----- 359 (1464)
..+...|.- |.+.... |...-+..++|+|||.-.+.+..++...+ ++.+||+|+.+ +.|-.+-++++.+
T Consensus 81 ~~~ws~QR~---WakR~~r-g~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 81 FRPWSAQRV---WAKRLVR-GKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CCchHHHHH---HHHHHHc-CCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 456677875 6655544 44444445999999987666555554444 69999999755 5778888888873
Q ss_pred CCeEEEEEcChhHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEec
Q 000482 360 QMNVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 437 (1464)
Q Consensus 360 ~l~vvvy~G~~~~R~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvD 437 (1464)
...++ ||+.-..++ .+.+ +...+.|||+|||-..+.++...|.+.+|++|+||
T Consensus 156 ~~~~~-yh~~l~~~ekee~le------------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVD 210 (1187)
T COG1110 156 DVLVV-YHSALPTKEKEEALE------------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVD 210 (1187)
T ss_pred ceeee-eccccchHHHHHHHH------------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEc
Confidence 33444 888733332 1111 11236899999999999999999999999999999
Q ss_pred ccccc
Q 000482 438 EGHRL 442 (1464)
Q Consensus 438 EAHrl 442 (1464)
.+.-+
T Consensus 211 DVDA~ 215 (1187)
T COG1110 211 DVDAI 215 (1187)
T ss_pred cHHHH
Confidence 98854
No 142
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.73 E-value=1.3e-07 Score=118.38 Aligned_cols=145 Identities=19% Similarity=0.308 Sum_probs=99.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHH-HHHHHHHHHCCC
Q 000482 282 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQ 360 (1464)
Q Consensus 282 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~-qW~~E~~k~~P~ 360 (1464)
..-+.+|-.+|.+++--| ..|..+++|.-+-.|||+.|=..++.- ..+..+++--.|...|. |=-++|+.-+.+
T Consensus 292 ~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred hhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc
Confidence 334578999999998655 889999999999999999974333322 22334788888966665 456788776655
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hhcccCCCceeEEEe
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIV 436 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~----d~~~L~~i~w~~VIv 436 (1464)
.. +++|+..- ......+|+|-+.++. ..+.++.+.| ||+
T Consensus 367 vg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliRDvE~--VIF 409 (1248)
T KOG0947|consen 367 VG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIRDVEF--VIF 409 (1248)
T ss_pred cc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhhccce--EEE
Confidence 54 56665432 2456689999998865 3455666665 999
Q ss_pred ccccccCCcc-hHHHHHHHhccccc--EEeecccc
Q 000482 437 DEGHRLKNKD-SKLFSSLKQYSTRH--RVLLTGTP 468 (1464)
Q Consensus 437 DEAHrlKN~~-Sk~~~al~~l~~~~--rLLLTGTP 468 (1464)
||+|.+-+.. .-.+..+.-+-.+| .++||||-
T Consensus 410 DEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 410 DEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 9999986533 23444444444555 48999993
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.71 E-value=6.8e-07 Score=114.44 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCC-HHHHHHHHHHHhccCCCceEEEeec
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-GAERQIRIDRFNAKNSSRFCFLLST 686 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s-~~eRq~~Id~Fn~~~s~~~vfLlST 686 (1464)
...|...+.+-+..+.+.|..|||-+..+..-+.|..+|...|+++..+..... .+.-..+|.. ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 356888888888888999999999999999999999999999999999999743 2344456654 34444 478999
Q ss_pred cccccccCc
Q 000482 687 RAGGLGINL 695 (1464)
Q Consensus 687 rAgg~GINL 695 (1464)
..+|+|.|+
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999665
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.68 E-value=3.8e-07 Score=121.52 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=90.8
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEc-cccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhc
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 382 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP-~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~ 382 (1464)
.+.+|++.|-+|+|||++++-++..+...... .++|||- ..|-.|-..+|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 45679999999999999998888777766333 5666666 4666889999998875433322 222333333220
Q ss_pred CCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc----cCCCceeEEEeccccccCCcchHHHHHHHh-cc
Q 000482 383 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 457 (1464)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~----L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~-l~ 457 (1464)
....-.|+|||-+.+...... ...-+.-+||+|||||- ....+.+.++. +.
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhc
Confidence 001335999999888654322 23345668999999994 33444444433 34
Q ss_pred cccEEeecccccCCC
Q 000482 458 TRHRVLLTGTPLQNN 472 (1464)
Q Consensus 458 ~~~rLLLTGTPlqNn 472 (1464)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 467799999997654
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.1e-06 Score=109.81 Aligned_cols=373 Identities=19% Similarity=0.172 Sum_probs=200.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
..|-+-|..+++-+..........+|.-.+|+|||-.-+.++...+..+ +-+||+||. ++++|-...|+.-+. .++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChh
Confidence 4688899999998876654456789999999999998888888877765 589999994 888998888887774 8888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccccc--
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 442 (1464)
Q Consensus 365 vy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrl-- 442 (1464)
++|..-...+......- -..+...|||-|...+-.-.. +-.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~~----------------------~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRR----------------------ARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHH----------------------HhcCCceEEEEechhhcCchh-----hccEEEEeccccccc
Confidence 88876555443222110 112566788888776632222 3368999999974
Q ss_pred CCcchHHH-----HHHHh-cccccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000482 443 KNKDSKLF-----SSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 516 (1464)
Q Consensus 443 KN~~Sk~~-----~al~~-l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~~L~p 516 (1464)
|-.++-.+ ..++. ...-..+|=|||| +++-+++. ... .
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATP---SLES~~~~---~~g------------------------------~ 371 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATP---SLESYANA---ESG------------------------------K 371 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCC---CHHHHHhh---hcC------------------------------c
Confidence 33222111 11111 2233468889999 11111111 000 0
Q ss_pred hhHHHHHhhHh-hcCCCceeeeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHH----HHHHHHHHhCCcccccCC
Q 000482 517 HLLRRVKKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN----VVMELRKLCCHPYMLEGV 591 (1464)
Q Consensus 517 ~~LRR~K~dv~-~~LPpk~e~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~n----il~~LRk~c~HP~L~~~~ 591 (1464)
+.+-+++.-.. ..+|.....-+.-++...-..+-..+++.....+.++...- -++| .-.-+.+.|.|..-.+.
T Consensus 372 y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~l-lflnRRGys~~l~C~~Cg~v~~Cp~- 449 (730)
T COG1198 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVL-LFLNRRGYAPLLLCRDCGYIAECPN- 449 (730)
T ss_pred eEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEE-EEEccCCccceeecccCCCcccCCC-
Confidence 10001111111 11232222111111111100011222222222222221100 0000 00013344444332211
Q ss_pred CCCccchhHHHHHHHhhhhHHHH-----HHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh--cCCeEEEEEcCCCHHH
Q 000482 592 EPDIEDTNESFKQLLESSGKLQL-----LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAE 664 (1464)
Q Consensus 592 e~~~~~~~~~~~~li~~SgKl~~-----L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~--~g~~~~ridGs~s~~e 664 (1464)
.+..+ .+....++|.. -..+-..+-+=|...|+++-. -.+.+++.|.. -+.++.|+|++++...
T Consensus 450 ------Cd~~l-t~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k 520 (730)
T COG1198 450 ------CDSPL-TLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRK 520 (730)
T ss_pred ------CCcce-EEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccch
Confidence 11100 00000000000 000000011113344554432 23445555532 3789999999987543
Q ss_pred --HHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC------------ChhcHHHHHHhhhhcCCCCcEE
Q 000482 665 --RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 665 --Rq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW------------NP~~d~QAigRahRiGQ~k~V~ 730 (1464)
-+.+++.|.++..+ +||-|....-|.|++....|.++|.|- ..+.+.|..||++|-+-.-.|.
T Consensus 521 ~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 521 GALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred hhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 46789999886665 899999999999999999998887763 2356689999999987777776
Q ss_pred EEEEEeC
Q 000482 731 IFRLITR 737 (1464)
Q Consensus 731 VyrLvt~ 737 (1464)
|--+-..
T Consensus 598 IQT~~P~ 604 (730)
T COG1198 598 IQTYNPD 604 (730)
T ss_pred EEeCCCC
Confidence 6544443
No 146
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=98.64 E-value=4.2e-08 Score=86.86 Aligned_cols=44 Identities=59% Similarity=0.902 Sum_probs=39.1
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccchhh
Q 000482 864 NSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDD 907 (1464)
Q Consensus 864 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~ 907 (1464)
+..+++||++||+++|+++++++...||||||.||||+|...++
T Consensus 20 ~~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~~ 63 (66)
T PF06465_consen 20 ESTDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEEDD 63 (66)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 34689999999999999999999999999999999999865443
No 147
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.63 E-value=1.6e-06 Score=112.83 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=48.6
Q ss_pred cccEEEecHHHHHhhh--cccCCCceeEEEeccccccCCcchHHHHHHHhc----ccccEEeecccccCC--CHHHHHHH
Q 000482 408 KFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY----STRHRVLLTGTPLQN--NLDELFML 479 (1464)
Q Consensus 408 kfdVvItSYe~l~~d~--~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l----~~~~rLLLTGTPlqN--nl~EL~sL 479 (1464)
+-.|++.|...+..|. ..+..-....|||||||++.+..+-.+- ++.+ +..+..++|+.|-.- .+..+-..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI-~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFI-LRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHH-HHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 3358888888887663 2233335789999999999765543332 2333 245689999999552 34455555
Q ss_pred HHhhcC
Q 000482 480 MHFLDA 485 (1464)
Q Consensus 480 L~fL~p 485 (1464)
+.-|..
T Consensus 86 mk~L~i 91 (814)
T TIGR00596 86 MRNLFL 91 (814)
T ss_pred HHHhCc
Confidence 555443
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=2.9e-06 Score=108.52 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcC-CCHHHHHHHHHHHhccCCCceEEEeec
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 686 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs-~s~~eRq~~Id~Fn~~~s~~~vfLlST 686 (1464)
...|...+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..++.. ...+.-..+|.. ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 4678899998899999999999999999999999999999999999999997 333444455554 44444 368999
Q ss_pred cccccccCc
Q 000482 687 RAGGLGINL 695 (1464)
Q Consensus 687 rAgg~GINL 695 (1464)
..+|+|-++
T Consensus 497 NMAGRGTDI 505 (939)
T PRK12902 497 NMAGRGTDI 505 (939)
T ss_pred cCCCCCcCE
Confidence 999999665
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=2.2e-06 Score=112.11 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh-CC-CCcEEEEEcc-ccHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFAT 356 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~-~~-~~p~LIVvP~-sll~qW~~E~~k 356 (1464)
..+||.|.+.+.-+......+++++|-..+|+|||+.+|+.+..... .+ ..+++..+.+ +.+.|-.+|+++
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 35799999999999999999999999999999999998876665444 22 2356666664 778899999998
No 150
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.59 E-value=1.8e-08 Score=87.81 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.3
Q ss_pred chhhhhhhccCCCCc---eEEEEEecccccccccccccccccc-hHHHHHHHH
Q 000482 195 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 243 (1464)
Q Consensus 195 ~veRII~~r~~~~~~---eyLVKWkgL~Y~~~TWE~~~~~~~~-~~~i~~f~~ 243 (1464)
+|+|||++|...+.. +|||||+|+||++||||.+..+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 689999999766555 9999999999999999999888754 677999975
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.59 E-value=2.6e-06 Score=112.31 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecccccccc
Q 000482 614 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 693 (1464)
Q Consensus 614 ~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GI 693 (1464)
.+.+.|..+...+.++||+....+++..+.+.|....++. ...|... .|.+++++|+..+.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 3444444444567789999888899998888887655444 5556432 356789999874443 788899999999
Q ss_pred Ccc--CCCEEEEecCCC
Q 000482 694 NLA--TADTVIIYDSDW 708 (1464)
Q Consensus 694 NL~--~Ad~VIi~D~dW 708 (1464)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 996 356677776554
No 152
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.58 E-value=6.1e-06 Score=101.56 Aligned_cols=242 Identities=17% Similarity=0.235 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhhcc------CCcEEEEecCCCchHHHHHHHHHHHHhCCCCc-EEEEEccccHHHH
Q 000482 278 HSPEFLSGGSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGERISP-HLVVAPLSTLRNW 350 (1464)
Q Consensus 278 ~~P~~~~g~~LrpyQlegvnwL~~~~~~------~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p-~LIVvP~sll~qW 350 (1464)
..|. +..+-|.--|+++|.+..+.... .-|.+|.|.-|.||-.+...+|...+-.+.++ ..|-|...+-..-
T Consensus 256 alP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 256 ALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred eccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccch
Confidence 4455 55688999999999987554432 34678999999998777665555444344444 4455556666666
Q ss_pred HHHHHHHC-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-----
Q 000482 351 EREFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----- 424 (1464)
Q Consensus 351 ~~E~~k~~-P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~----- 424 (1464)
.+.+.... +.+.|..+..-+ +. .++...+...+--|+++||..+..+..
T Consensus 335 ERDL~DigA~~I~V~alnK~K------------Ya-------------kIss~en~n~krGViFaTYtaLIGEs~~~~~k 389 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFK------------YA-------------KISSKENTNTKRGVIFATYTALIGESQGKGGK 389 (1300)
T ss_pred hhchhhcCCCCccceehhhcc------------cc-------------cccccccCCccceeEEEeeHhhhhhccccCch
Confidence 77776544 333332221100 00 001112234566799999999865432
Q ss_pred ---ccCC-Cce------eEEEeccccccCC-------cchHHHHHHHhc----ccccEEeecccccCCCHHHHHHHHHhh
Q 000482 425 ---SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL 483 (1464)
Q Consensus 425 ---~L~~-i~w------~~VIvDEAHrlKN-------~~Sk~~~al~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL 483 (1464)
.|+. +.| .+||+||||+.|| ..++..+.+..+ ...+++..|||-.. |=-++....
T Consensus 390 yrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~ 465 (1300)
T KOG1513|consen 390 YRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMV 465 (1300)
T ss_pred HHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----Ccchhhhhh
Confidence 2221 244 4889999999999 345666666554 44566788888532 112222233
Q ss_pred cCC------CCCChHHHHHHHhhh--hhHHHHHHHHHhhhhhhHHHHHhhHhhcCCCceeeeecccCCHHHHHHHHHHHH
Q 000482 484 DAG------KFGSLEEFQEEFKDI--NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 555 (1464)
Q Consensus 484 ~p~------~f~~~~~F~e~f~~~--~~~~~i~~L~~~L~p~~LRR~K~dv~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~ 555 (1464)
.-+ .|+.+.+|....... ...+.+.--.++-.-|+-|.+ .+......+-.|+|++.=++.|..-.+
T Consensus 466 RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQL------SFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 466 RLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQL------SFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred hhccccCCCcCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhc------cccCceEEEEecccCHHHHHHHHHHHH
Confidence 333 355666665443221 111111111111111222221 344556778889999999999976544
No 153
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.57 E-value=7.1e-07 Score=116.24 Aligned_cols=157 Identities=20% Similarity=0.279 Sum_probs=105.6
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC-
Q 000482 284 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 361 (1464)
Q Consensus 284 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l- 361 (1464)
-+.+|-++|.+++.-| ..+.+++++..+|.|||+.+-.++..-...+. .+.-..|. ++-+|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 3588999999998766 88999999999999999998766665544443 58888995 55566666765443221
Q ss_pred -eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hhcccCCCceeEEEe
Q 000482 362 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIV 436 (1464)
Q Consensus 362 -~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~----d~~~L~~i~w~~VIv 436 (1464)
-|-+++|+.. -.....++++|-|.++. ....+..+.| ||+
T Consensus 191 ~~vGL~TGDv~---------------------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~--ViF 235 (1041)
T COG4581 191 DMVGLMTGDVS---------------------------------INPDAPCLVMTTEILRNMLYRGSESLRDIEW--VVF 235 (1041)
T ss_pred hhccceeccee---------------------------------eCCCCceEEeeHHHHHHHhccCcccccccce--EEE
Confidence 1233444321 12355677777788764 2344555555 999
Q ss_pred ccccccCCcc-hHHHHHHHhcccc--cEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000482 437 DEGHRLKNKD-SKLFSSLKQYSTR--HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 500 (1464)
Q Consensus 437 DEAHrlKN~~-Sk~~~al~~l~~~--~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~ 500 (1464)
||.|.+.... ......+.-+-.+ ..++||||- ++..+|.+|+..
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 9999997643 2334443333333 678999993 677888888864
No 154
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.55 E-value=2.1e-08 Score=121.72 Aligned_cols=49 Identities=43% Similarity=1.022 Sum_probs=44.0
Q ss_pred ccccccccCCCCe---EecCCCCCccccccCCCC--CCCCCCCCCCCCccCCCC
Q 000482 53 DDSCQACGESENL---MSCDTCTYAYHAKCLVPP--LKAPPSGSWRCPECVSPL 101 (1464)
Q Consensus 53 ~~~C~~C~~~g~l---l~Cd~C~~~~H~~Cl~P~--l~~~p~~~W~C~~C~~~~ 101 (1464)
.++|..|++.|.. +|||+|+++||+.||.|| ...+|.|.|+|++|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 4599999999875 999999999999999999 467999999999998643
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=6e-06 Score=106.72 Aligned_cols=120 Identities=19% Similarity=0.250 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|+..+.+-+..+.+.|..|||-+..+..-++|...|..+|+++..+.......+ ..+|.. ++..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA~--AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVAE--AGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHHh--cCCCC--cEEEecc
Confidence 467999999999999999999999999999999999999999999998887644222 344442 33444 4689999
Q ss_pred ccccccCcc--------CCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEE
Q 000482 688 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 732 (1464)
Q Consensus 688 Agg~GINL~--------~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 732 (1464)
.+|+|-++. ..=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998875 234788889999999999999999999988665544
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.50 E-value=1e-05 Score=105.44 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=76.3
Q ss_pred HhcCceEEEEecchhhHHHHHHHHhhcCCe-EEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccC--CC
Q 000482 623 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--AD 699 (1464)
Q Consensus 623 ~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~-~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~--Ad 699 (1464)
...+.++|||...-.++..+.++|...... .....|..+ +...++.|.+...+ .|++.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 344558999999999999999999876653 344445443 34899999887665 48999999999999985 68
Q ss_pred EEEEecCCCC-hh-----------------------------cHHHHHHhhhhcCCCCcEE
Q 000482 700 TVIIYDSDWN-PH-----------------------------ADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 700 ~VIi~D~dWN-P~-----------------------------~d~QAigRahRiGQ~k~V~ 730 (1464)
.|||.-.||= |. ...|++||+.|--+.+-|.
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 8999887773 21 1269999999954444443
No 157
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.47 E-value=9.4e-05 Score=99.52 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHH-H-HHHHH---HH
Q 000482 282 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-N-WEREF---AT 356 (1464)
Q Consensus 282 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~-q-W~~E~---~k 356 (1464)
.+++.+.||-|.+-++.+...+..+...++-..+|+|||+..+.-+.........|++|.+++..|. | +.+++ ++
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 4456789999999999888888888888889999999999876555443333446899999976664 4 45543 44
Q ss_pred HCC-CCeEEEEEcChh
Q 000482 357 WAP-QMNVVMYVGTSQ 371 (1464)
Q Consensus 357 ~~P-~l~vvvy~G~~~ 371 (1464)
.++ .+++++..|...
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 577887777554
No 158
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.38 E-value=7.5e-06 Score=89.75 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=43.0
Q ss_pred EeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCC
Q 000482 683 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 683 LlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 727 (1464)
|++|...|.|+++...+.||+||.+-.+..|+.+.+|++|.|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 789999999999999999999999999999999999999999764
No 159
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.37 E-value=0.00015 Score=92.40 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHH-HHhCCCCcEEEEEcc-ccHHHHHHHHHHHC-----CCCeEE
Q 000482 292 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 364 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~-l~~~~~~p~LIVvP~-sll~qW~~E~~k~~-----P~l~vv 364 (1464)
|.+-+.++...+..+...++-..+|+|||+..+.-+.. +......++||++|+ .+..|+.+++..+. ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 77778888888888888999999999999987655543 332234599999996 66678888876554 256777
Q ss_pred EEEcCh
Q 000482 365 MYVGTS 370 (1464)
Q Consensus 365 vy~G~~ 370 (1464)
+..|..
T Consensus 82 ~lkGr~ 87 (636)
T TIGR03117 82 FFPGSQ 87 (636)
T ss_pred EEECCc
Confidence 777654
No 160
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.29 E-value=7.9e-06 Score=106.49 Aligned_cols=142 Identities=19% Similarity=0.328 Sum_probs=90.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEccccHH-HHHH---------HHHHHCCC--CeEEEEEcChh--
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWER---------EFATWAPQ--MNVVMYVGTSQ-- 371 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP~sll~-qW~~---------E~~k~~P~--l~vvvy~G~~~-- 371 (1464)
.+..+.++||+|||.+++..+.+|... +...+|||||...+. .... -|...+++ ++..+|...+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999999776 556999999975442 2222 22332322 34445543321
Q ss_pred -HH----HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--c------cC--CCcee----
Q 000482 372 -AR----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--S------LK--PIKWQ---- 432 (1464)
Q Consensus 372 -~R----~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~------L~--~i~w~---- 432 (1464)
.| ..++.+- ..........+|+|+|.+++.++.. . +. ...|+
T Consensus 140 ~gr~~~~~~i~~Fa-------------------~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNFV-------------------KASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHHH-------------------hccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11 1222210 0011112356899999999976421 1 11 12443
Q ss_pred ---EEEeccccccCCcchHHHHHHHhcccccEEeecccc
Q 000482 433 ---CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 468 (1464)
Q Consensus 433 ---~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTP 468 (1464)
+||+||+|++.. ..+...++..+...+.|..|||-
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~ 238 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATF 238 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeec
Confidence 899999999965 34466888999999999999995
No 161
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.29 E-value=4.3e-06 Score=102.91 Aligned_cols=152 Identities=20% Similarity=0.314 Sum_probs=100.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEccccH-HHHHHHHHHHCCCCeE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNV 363 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~k~~P~l~v 363 (1464)
.+|-|+|..++.-+ .++..+++..-+-.|||+.| .|++..|+.. .+++--.|-..| .|=.|||..-+.+ |
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK--QRVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc--CeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 57999999997644 89999999999999999997 4555666554 377778885444 5556777554322 2
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hhcccCCCceeEEEeccc
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIVDEG 439 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~----d~~~L~~i~w~~VIvDEA 439 (1464)
-..+|+-. -......+|+|-+.++. -...++.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 23333321 11345578888888764 3456677778 999999
Q ss_pred cccCCcchH-HHH-HHHhcc-cccEEeecccccCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000482 440 HRLKNKDSK-LFS-SLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 500 (1464)
Q Consensus 440 HrlKN~~Sk-~~~-al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~ 500 (1464)
|.++....- .+. .+.-+. .-+-++||||- ++..+|.+|...
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 999864421 111 111222 23457899993 567788888654
No 162
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.26 E-value=0.00013 Score=95.27 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc-CCeEEEEEcCCCHHHHHHHHHHHhcc-CCCceEEEeecccccc
Q 000482 614 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAK-NSSRFCFLLSTRAGGL 691 (1464)
Q Consensus 614 ~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~-g~~~~ridGs~s~~eRq~~Id~Fn~~-~s~~~vfLlSTrAgg~ 691 (1464)
.+.+.|..+...+.++|||.....+++.+.+.|... +++ +.+.|. ..|.++++.|.+. ..+.-.+|+.+....+
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~E 597 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAE 597 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccc
Confidence 344444444445556888888888888888888643 333 344554 3577889877642 0011136778899999
Q ss_pred ccCccC--CCEEEEecCCC
Q 000482 692 GINLAT--ADTVIIYDSDW 708 (1464)
Q Consensus 692 GINL~~--Ad~VIi~D~dW 708 (1464)
|||++. +..|||.-.|+
T Consensus 598 GVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 598 GLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccCCCCceEEEEEEcCCC
Confidence 999984 78999988776
No 163
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.23 E-value=4e-07 Score=111.00 Aligned_cols=47 Identities=34% Similarity=0.914 Sum_probs=41.5
Q ss_pred ccccccccCCC---CeEecCCCCCc-cccccCCCCCCCCCCCCCCCCccCC
Q 000482 53 DDSCQACGESE---NLMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVS 99 (1464)
Q Consensus 53 ~~~C~~C~~~g---~ll~Cd~C~~~-~H~~Cl~P~l~~~p~~~W~C~~C~~ 99 (1464)
..-|.+|...+ .||+||.|..+ ||++||+|+|..+|-+.|||+.|..
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 45588887654 39999999999 9999999999999999999999985
No 164
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.21 E-value=0.00023 Score=90.35 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=105.7
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcc-ccHHHHHHHHH-HH-CCCCeE
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFA-TW-APQMNV 363 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP~-sll~qW~~E~~-k~-~P~l~v 363 (1464)
.-.+|.+-+.- ...+..++|...+-.|||...--++...++. ..+-++-|+|. +++.|-..++. +| ++.+..
T Consensus 512 Pd~WQ~elLDs----vDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 512 PDEWQRELLDS----VDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CcHHHHHHhhh----hhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 44588886543 4888999999999999999988777766654 45688999994 77777666654 33 222221
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc---cCC--CceeEEEecc
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKP--IKWQCMIVDE 438 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~---L~~--i~w~~VIvDE 438 (1464)
.+ .-.-...++| ......+.|+||-.+.+..-... -.. -+..+||+||
T Consensus 588 g~----sl~g~ltqEY-----------------------sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDE 640 (1330)
T KOG0949|consen 588 GV----SLLGDLTQEY-----------------------SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDE 640 (1330)
T ss_pred ch----hhHhhhhHHh-----------------------cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEech
Confidence 11 1111122222 11235788999999877542111 001 1346899999
Q ss_pred ccccCCc-chHHHHHHHhcccccEEeecccccCCCHHHHHHHHH
Q 000482 439 GHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 481 (1464)
Q Consensus 439 AHrlKN~-~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~ 481 (1464)
+|.+.|. .+.+...+..+..-..|+|||| ++|+..+..-++
T Consensus 641 VH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 641 VHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 9999985 4566666666666678999999 578877777666
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.20 E-value=7.6e-05 Score=95.14 Aligned_cols=114 Identities=11% Similarity=0.293 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000482 609 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 688 (1464)
Q Consensus 609 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrA 688 (1464)
+....+...|+..+. .|++|-|||....+.+++++++...+.++..++|..+..+. +.+ ..+.+++-|.+
T Consensus 266 ~~~~tF~~~L~~~L~-~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARLN-AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHHh-CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 344456666666664 69999999999999999999999999999999887765522 222 33457888888
Q ss_pred cccccCccC--CCEEEEe--cCCCChhc--HHHHHHhhhhcCCCCcEEEEE
Q 000482 689 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIFR 733 (1464)
Q Consensus 689 gg~GINL~~--Ad~VIi~--D~dWNP~~--d~QAigRahRiGQ~k~V~Vyr 733 (1464)
...|+++-. .|.|..| .....|.. ..|.+||+-.+.. +++.||.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 899999864 5667666 33334554 5899999987764 4555553
No 166
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.16 E-value=1.1e-06 Score=76.39 Aligned_cols=49 Identities=41% Similarity=0.650 Sum_probs=41.6
Q ss_pred chhhhhhhccCC--CCceEEEEEecccccccccccccccccchHHHHHHHH
Q 000482 195 TVDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 243 (1464)
Q Consensus 195 ~veRII~~r~~~--~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~ 243 (1464)
.|++||++|... +..+|||||+|++|++||||....+......|+.|..
T Consensus 4 ~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 359999999766 7889999999999999999998877655677888763
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.06 E-value=2.6e-05 Score=80.72 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=71.4
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcC
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 383 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~ 383 (1464)
.++.-.+|-.-.|.|||-..|.-+..-.-....++||++|.-.+- +|+.+...+..+ -++-..-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeec----------
Confidence 456677899999999999876543332222335999999987663 455555544442 222111100
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhh-hcccCCCceeEEEeccccccCCcchHHHHH-HHhccc---
Q 000482 384 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFSS-LKQYST--- 458 (1464)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d-~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~a-l~~l~~--- 458 (1464)
.....--|-+++|.++... .......+|++||+||||-. ...|..... +..+..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0123445777888887653 23444568999999999963 444443333 233322
Q ss_pred ccEEeecccc
Q 000482 459 RHRVLLTGTP 468 (1464)
Q Consensus 459 ~~rLLLTGTP 468 (1464)
...+++||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2478999999
No 168
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.03 E-value=1.4e-06 Score=74.71 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.6
Q ss_pred ccccccC---CCCeEecCCCCCccccccCCCCCC--CCCCCCCCCCccC
Q 000482 55 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 98 (1464)
Q Consensus 55 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~P~l~--~~p~~~W~C~~C~ 98 (1464)
+|.+|+. .+.+|.|+.|.+.||+.|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5888887 456999999999999999999987 4456699999995
No 169
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.98 E-value=0.00017 Score=88.31 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEec----CCCCh-----------hcHH
Q 000482 650 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SDWNP-----------HADL 714 (1464)
Q Consensus 650 g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D----~dWNP-----------~~d~ 714 (1464)
++.+.-|...++.+-..+ -|+....+..-++++|..+...|.++....||=-. .-+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 445555555555543333 37655666666899999999999999888777321 12233 3334
Q ss_pred HHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 000482 715 QAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 746 (1464)
Q Consensus 715 QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~~ 746 (1464)
+|-.|++|.|.+.+-..|||+|+.++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 55566666677888999999999998887764
No 170
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.97 E-value=0.0004 Score=86.26 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=78.3
Q ss_pred eEEEEecchhhHHHHHHHHhh----cCC----eEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCC
Q 000482 628 RVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 699 (1464)
Q Consensus 628 KVLIFSq~~~~LdiL~~~L~~----~g~----~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad 699 (1464)
-+|||=.-....+.+.+.|.. .+- -+.-+.|+.+.++..++ |...+.+..-+++||+.+...|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 588887776665555555533 222 24678999998765544 6666656666899999999999999887
Q ss_pred EEEEecCC------CCh-----------hcHHHHHHhhhhcCCCCcEEEEEEEeCCCH
Q 000482 700 TVIIYDSD------WNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSI 740 (1464)
Q Consensus 700 ~VIi~D~d------WNP-----------~~d~QAigRahRiGQ~k~V~VyrLvt~~Tv 740 (1464)
.|| |+. ||| ..-.||..|++|-|.+.+..+|||.++.-+
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 776 442 344 244678888888888999999999998765
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.97 E-value=5e-05 Score=88.96 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHH-HHHhCCC----CcEEEEEccc-cHHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLS-TLRNWEREFATW 357 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~l~~~~~----~p~LIVvP~s-ll~qW~~E~~k~ 357 (1464)
.+.||.|++-+.-+...+..++.+|+-..+|+|||+..+..+. ++..... .+++++++.. .+.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888899999999999999999999876664 3333332 2778888753 344545556554
No 172
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.97 E-value=5e-05 Score=88.96 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHH-HHHhCCC----CcEEEEEccc-cHHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLS-TLRNWEREFATW 357 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~l~~~~~----~p~LIVvP~s-ll~qW~~E~~k~ 357 (1464)
.+.||.|++-+.-+...+..++.+|+-..+|+|||+..+..+. ++..... .+++++++.. .+.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888899999999999999999999876664 3333332 2778888753 344545556554
No 173
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.94 E-value=4.8e-06 Score=72.20 Aligned_cols=48 Identities=38% Similarity=0.644 Sum_probs=41.7
Q ss_pred hhhhhhhc-cCCCCceEEEEEecccccccccccccccccchHHHHHHHH
Q 000482 196 VDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 243 (1464)
Q Consensus 196 veRII~~r-~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~ 243 (1464)
|+|||++| ...+..+|||||+|++|.++||+....+..+...+.+|..
T Consensus 4 v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 4 VEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred hheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 89999999 7778889999999999999999998876556777888875
No 174
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.94 E-value=0.00067 Score=88.42 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHhc--CceEEEEecchhhHHHHHHHHh----hcC---CeEEEEEcCCCHHHHHHHHHHHhccCCCce
Q 000482 610 GKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLT----FKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRF 680 (1464)
Q Consensus 610 gKl~~L~kLL~~l~~~--g~KVLIFSq~~~~LdiL~~~L~----~~g---~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~ 680 (1464)
-...++..++..+.+. ...+|||-.-..-+..+.+.|. ... +-...++++++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3455666666666554 3589999887776666666664 222 556778999998776655 788888877
Q ss_pred EEEeeccccccccCccCCCEEE--------EecCCC----------ChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHH
Q 000482 681 CFLLSTRAGGLGINLATADTVI--------IYDSDW----------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 742 (1464)
Q Consensus 681 vfLlSTrAgg~GINL~~Ad~VI--------i~D~dW----------NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE 742 (1464)
-++++|..+..+|.+.++-.|| .||+.- +-++-.||.|||+| ..+-.+|+|+++.-.+-
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 7899999999999998876665 344422 23344677777766 66778999998875544
Q ss_pred HH
Q 000482 743 RM 744 (1464)
Q Consensus 743 ~I 744 (1464)
.+
T Consensus 549 ~~ 550 (924)
T KOG0920|consen 549 LM 550 (924)
T ss_pred cc
Confidence 33
No 175
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.93 E-value=2.3e-05 Score=91.20 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=86.1
Q ss_pred CceEEEEecchhhHHHHHHHHhhc---CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000482 626 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 702 (1464)
Q Consensus 626 g~KVLIFSq~~~~LdiL~~~L~~~---g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 702 (1464)
-.|.||||....-.|-|+.++..+ .|+++.++|...+.+|.+-++.|...+ +.|||+|.+++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d---vkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD---VKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC---eEEEEEehhhhccccccCCceEE
Confidence 469999999999999999999775 467889999999999999999997644 45999999999999999999999
Q ss_pred EecCCCChhcHHHHHHhhhhc
Q 000482 703 IYDSDWNPHADLQAMARAHRL 723 (1464)
Q Consensus 703 i~D~dWNP~~d~QAigRahRi 723 (1464)
....+-.-++|..||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.0012 Score=85.17 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 687 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr 687 (1464)
...|...+.+-+....+.|..|||-+..+..-+.|...|...|++...++..-. .|+.-|-.+ ++..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 467899999999999999999999999999999999999999999999988765 333333332 33334 3578999
Q ss_pred ccccccCcc-CCC----------EEEEecCCCChhcHHHHHHhhhhcC
Q 000482 688 AGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLG 724 (1464)
Q Consensus 688 Agg~GINL~-~Ad----------~VIi~D~dWNP~~d~QAigRahRiG 724 (1464)
.+|+|-++. ..+ +||=-.-.=+-..+.|-.||++|.|
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 999999986 333 4566666667777889999999999
No 177
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.85 E-value=3e-05 Score=89.02 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=71.4
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCC--------CEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 000482 667 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 667 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~A--------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 738 (1464)
...+.|+++... ++|-++||+.||+|++- ..-|+++++|+....+|.+||+||.||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789875432 45557999999999952 2457899999999999999999999999876666677777
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 000482 739 SIEERMMQMTKKKMVLEHLVV 759 (1464)
Q Consensus 739 TvEE~I~~~a~~K~~L~~~Vi 759 (1464)
..|.+......+|+.--.++.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 889999999988886544444
No 178
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.84 E-value=0.00043 Score=88.57 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEccccH-HHHHHHHHHHCC--CCe
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--QMN 362 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~k~~P--~l~ 362 (1464)
.|+++|.+.+.- .....+++.|.+..++.|||+.+ |..+..++.. .+..|.+.|--.+ ..=..++..+.- +++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-RRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-hhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 588888888752 22347899999999999999986 3333333322 2467777885433 333334444431 344
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC----CceeEEEecc
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDE 438 (1464)
Q Consensus 363 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~----i~w~~VIvDE 438 (1464)
|-.|.|.- +.. .....-+|.|+|.|......+.|-. -.-.+|||||
T Consensus 300 ve~y~g~~-------------~p~-----------------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 300 VEEYAGRF-------------PPE-----------------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred chhhcccC-------------CCC-----------------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 44444321 111 1123457899999988776554422 1346899999
Q ss_pred ccccCC--cchHHHHHHHhc----ccc--cEEeeccccc
Q 000482 439 GHRLKN--KDSKLFSSLKQY----STR--HRVLLTGTPL 469 (1464)
Q Consensus 439 AHrlKN--~~Sk~~~al~~l----~~~--~rLLLTGTPl 469 (1464)
-|-+.. ....+-..|..+ ... ..+++|||-.
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~ 388 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIP 388 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccC
Confidence 999853 233222222222 222 2589999963
No 179
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00082 Score=87.80 Aligned_cols=111 Identities=19% Similarity=0.288 Sum_probs=78.7
Q ss_pred CceEEEEecchhhHHHHHHHHhh----cCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000482 626 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 701 (1464)
Q Consensus 626 g~KVLIFSq~~~~LdiL~~~L~~----~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 701 (1464)
..-+|||-.-....+...+.|.. ....++-+.|..+.++..++ |+....++.-++++|+.+..+|.+.....|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34688888777777777777765 45778899999998887764 655455534489999999999999999888
Q ss_pred EEecC------CCChhcH-----------HHHHHhhhhcCCCCcEEEEEEEeCCCHH
Q 000482 702 IIYDS------DWNPHAD-----------LQAMARAHRLGQTNKVMIFRLITRGSIE 741 (1464)
Q Consensus 702 Ii~D~------dWNP~~d-----------~QAigRahRiGQ~k~V~VyrLvt~~TvE 741 (1464)
| |+ -|||..- ..|.-|++|-|.+.+-..|||.+++..+
T Consensus 336 I--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 I--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred e--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 7 33 2333322 2244455555557788999999986555
No 180
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.79 E-value=9.1e-06 Score=89.62 Aligned_cols=55 Identities=24% Similarity=0.642 Sum_probs=47.7
Q ss_pred hhhhhhcccccccccccccCC---CCeEecCCCCCccccccCCCCCCCCCCCCCCCC-ccC
Q 000482 42 KFERIVRIDAKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP-ECV 98 (1464)
Q Consensus 42 ~~~~~~~~d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~-~C~ 98 (1464)
-.+-..|.+..+..|.+|+++ .++++||.|+|+||.+|+ .|.++|.|.|.|. .|.
T Consensus 303 ~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 303 QYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCR 361 (381)
T ss_pred HHhhcchhhcccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHH
Confidence 345677888899999999986 459999999999999999 9999999999998 344
No 182
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.69 E-value=0.021 Score=75.46 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHHhh----ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcc-ccHHHHHHHHHHHC--CC
Q 000482 289 HPYQLEGLNFLRFSW----SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 360 (1464)
Q Consensus 289 rpyQlegvnwL~~~~----~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP~-sll~qW~~E~~k~~--P~ 360 (1464)
+-+|-.+++.+...- ..|--+|-...||.|||+.-.=+++.|.....+ ++-|..=+ ++.-|=-.++++=. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 458988887764422 234446677899999999988888888776666 55554444 44456566665433 34
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCC----CCchhh-----------hccccCcc---------c-cccccccccccEEEec
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFP----KNPKKV-----------KKKKSGQV---------V-SESKQDRIKFDVLLTS 415 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~----~~~~~~-----------~~~~~~~~---------~-~~~~~~~~kfdVvItS 415 (1464)
-...|..|+...++.....+-... .+.... .-...+.+ . ...........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 567788888887776531111000 000000 00000000 0 0011122345788888
Q ss_pred HHHHHhhhcccC---------CCceeEEEeccccccCCcchHHHHHHHh---cccccEEeecccccCCCHHHH
Q 000482 416 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDEL 476 (1464)
Q Consensus 416 Ye~l~~d~~~L~---------~i~w~~VIvDEAHrlKN~~Sk~~~al~~---l~~~~rLLLTGTPlqNnl~EL 476 (1464)
.+.+......++ .+-=..|||||+|-+-.........+.. .-....++||||--..-...|
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 888765543322 1223589999999865433332222222 234678999999544333333
No 183
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.68 E-value=2e-05 Score=86.71 Aligned_cols=47 Identities=36% Similarity=1.064 Sum_probs=40.5
Q ss_pred cccccccccccCC--CCeEecC--CCCCc-cccccCCCCCCCCCCCCCCCCccCC
Q 000482 50 DAKDDSCQACGES--ENLMSCD--TCTYA-YHAKCLVPPLKAPPSGSWRCPECVS 99 (1464)
Q Consensus 50 d~~~~~C~~C~~~--g~ll~Cd--~C~~~-~H~~Cl~P~l~~~p~~~W~C~~C~~ 99 (1464)
..+..+|. |++. |.|+-|| .|.+- ||+.|+ .|...|+|.|||++|..
T Consensus 218 e~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEEE-ecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 44678888 7765 7899999 59965 999999 99999999999999974
No 184
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.67 E-value=2.2e-05 Score=81.13 Aligned_cols=28 Identities=46% Similarity=1.066 Sum_probs=26.1
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCCCC
Q 000482 74 AYHAKCLVPPLKAPPSGSWRCPECVSPL 101 (1464)
Q Consensus 74 ~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 101 (1464)
+||++||+|||..+|.|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 6999999999999999999999999754
No 185
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.66 E-value=6e-06 Score=71.98 Aligned_cols=54 Identities=33% Similarity=0.706 Sum_probs=38.6
Q ss_pred ccccccccccccCccCCCCcccccchhhhHHHHHhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhhh
Q 000482 103 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 175 (1464)
Q Consensus 103 didkiL~wr~~P~~~~~~~~~~~~~k~~~~~EYLVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~~f~kk 175 (1464)
.|++|+++|....... ..+|||||+|++|.||||+|++.|... .| ..++.|.++
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 3678888864332110 358999999999999999999988643 23 357777653
No 186
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.55 E-value=2.5e-05 Score=91.86 Aligned_cols=49 Identities=45% Similarity=1.027 Sum_probs=43.0
Q ss_pred cccccccccccCCCC---eEecCCCCCccccccCCCCCCCCCCCC----CCCCccC
Q 000482 50 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPECV 98 (1464)
Q Consensus 50 d~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~----W~C~~C~ 98 (1464)
......|.+|....+ |+.||+|...||+.||.|||+..|... |.|.+|-
T Consensus 541 ~a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 541 KAMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred cccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 345677999998876 899999999999999999999999654 9999993
No 187
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.51 E-value=3e-05 Score=67.35 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.8
Q ss_pred ccccccccccccCccCCCCcccccchhhhHHHHHhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhh
Q 000482 103 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 174 (1464)
Q Consensus 103 didkiL~wr~~P~~~~~~~~~~~~~k~~~~~EYLVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~~f~k 174 (1464)
.+++|++.|.... ....+|||||+|++|.||||+|+..|... ..++..|++
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 4688888875432 01248999999999999999999998642 246777764
No 188
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.50 E-value=0.00065 Score=75.89 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCc-EEEEecCCCchHHHHHHHHHHHH-------hCCCCcEEEEEcc-ccHHHHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 356 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~l~-------~~~~~p~LIVvP~-sll~qW~~E~~k 356 (1464)
+|-+.|..++..+ ..... +++.-..|+|||.+..+++..+. ....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4778999998655 45555 88899999999988888887773 2344599999995 667777766666
No 189
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.47 E-value=0.00033 Score=84.72 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=79.3
Q ss_pred hcCceEEEEecchhhHHHHHHHHhhcCCe-EEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000482 624 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 702 (1464)
Q Consensus 624 ~~g~KVLIFSq~~~~LdiL~~~L~~~g~~-~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 702 (1464)
..|.-|+-||.. -+--+...+..+|.. .+.|.|+.+++.|.+.-..||++.+.. -+|++|+|.|.|+||. .++||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~-dvlVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC-DVLVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc-ceEEeecccccccccc-eeEEE
Confidence 358889999864 223345555666665 999999999999999999999876654 4899999999999984 67899
Q ss_pred EecCC---------CChhcHHHHHHhhhhcCCCC
Q 000482 703 IYDSD---------WNPHADLQAMARAHRLGQTN 727 (1464)
Q Consensus 703 i~D~d---------WNP~~d~QAigRahRiGQ~k 727 (1464)
|++.- -...+..|.-|||+|.|.+-
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 98764 34566789999999998764
No 190
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.42 E-value=5.9e-05 Score=87.41 Aligned_cols=45 Identities=31% Similarity=0.835 Sum_probs=38.4
Q ss_pred cccccc-ccCCCCeEecCC--CC-CccccccCCCCCCCCCCCCCCCCccCC
Q 000482 53 DDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 99 (1464)
Q Consensus 53 ~~~C~~-C~~~g~ll~Cd~--C~-~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 99 (1464)
..+|.+ |...|+|+-||. |+ ..||+.|+ .|...|.|.|||+.|..
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhh
Confidence 345554 456789999997 99 89999999 99999999999999985
No 191
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.34 E-value=8.8e-05 Score=90.98 Aligned_cols=52 Identities=33% Similarity=0.841 Sum_probs=47.9
Q ss_pred hcccccccccccccCCCC---eEecCCCCCccccccCCCCCCCCCCCCCCCCccC
Q 000482 47 VRIDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 98 (1464)
Q Consensus 47 ~~~d~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 98 (1464)
.|.+..+.+|..|+..|+ ++.|+.|+-+||.+|..|+...+|.|.|+|+.|.
T Consensus 62 gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 62 GWRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred CcccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 367888999999998776 8999999999999999999999999999999886
No 192
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.18 E-value=0.00025 Score=93.26 Aligned_cols=64 Identities=28% Similarity=0.724 Sum_probs=51.8
Q ss_pred ccccccccccCCC-----CeEecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCC
Q 000482 51 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGD 119 (1464)
Q Consensus 51 ~~~~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~didkiL~wr~~P~~~~~ 119 (1464)
..+.+|.+|.++. .+|.||.|..++|+.|.. ...+|+|.|.|..|.-..... +.|-++|...+.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~---v~c~~cp~~~gA 285 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP---VRCLLCPSKGGA 285 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcc---cceEeccCCCCc
Confidence 4578899998753 399999999999999994 677899999999999766444 666677876654
No 193
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.15 E-value=0.0039 Score=71.91 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=75.1
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH----HHHHHHHHHHCCC
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 360 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll----~qW~~E~~k~~P~ 360 (1464)
|..+++-|+-|+--| ..|-|.-..+|=|||+++. +++++..-...++=||+.+..| .+|...|-.++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~-l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAA-LPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHH-HHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHH-HHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456788888887444 3455999999999999874 4444444444588888888777 45888888888 7
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---------hcccCCCce
Q 000482 361 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 431 (1464)
Q Consensus 361 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---------~~~L~~i~w 431 (1464)
+.+-...+........ .....+|+-+|-..+.-| ........+
T Consensus 147 lsv~~~~~~~~~~~r~----------------------------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERR----------------------------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHH----------------------------HHHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 8887777654321110 123567877777666433 111123467
Q ss_pred eEEEecccccc
Q 000482 432 QCMIVDEGHRL 442 (1464)
Q Consensus 432 ~~VIvDEAHrl 442 (1464)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999998876
No 194
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.08 E-value=0.019 Score=71.17 Aligned_cols=83 Identities=23% Similarity=0.224 Sum_probs=56.8
Q ss_pred eEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC------Ch--------------h
Q 000482 652 QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NP--------------H 711 (1464)
Q Consensus 652 ~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D~dW------NP--------------~ 711 (1464)
-++-|..+.+.+...++ |...+.+..-++|+|..+...|.+.....|| ||.+ || +
T Consensus 508 iv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKA 582 (902)
T KOG0923|consen 508 IVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKA 582 (902)
T ss_pred EEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechh
Confidence 35667788877765554 5544444455889999999999988877776 6654 33 2
Q ss_pred cHHHHHHhhhhcCCCCcEEEEEEEeCCCHHH
Q 000482 712 ADLQAMARAHRLGQTNKVMIFRLITRGSIEE 742 (1464)
Q Consensus 712 ~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE 742 (1464)
.-.||-|||+|.| +-..|||+|.-+++.
T Consensus 583 sA~QRaGRAGRtg---PGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 583 SANQRAGRAGRTG---PGKCFRLYTAWAYEH 610 (902)
T ss_pred hhhhhccccCCCC---CCceEEeechhhhhh
Confidence 3357777776655 566889998766543
No 195
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.08 E-value=0.00025 Score=87.51 Aligned_cols=90 Identities=28% Similarity=0.733 Sum_probs=60.5
Q ss_pred ccccccccccCC-----CCeEecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCCCCcccc
Q 000482 51 AKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKL 125 (1464)
Q Consensus 51 ~~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~didkiL~wr~~P~~~~~~~~~~~ 125 (1464)
+++.+|-+|..+ .+|++||.|.-..|+.|. .+..+|+|.|.|..|.-... .. |=++|..-+.-.....
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg~~--pp---CvLCPkkGGamK~~~s 341 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALGIE--PP---CVLCPKKGGAMKPTKS 341 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhccccCC--CC---eeeccccCCcccccCC
Confidence 356788888865 349999999999999999 89999999999999985310 01 1123433322111111
Q ss_pred cchhhhHHHHHhhccCCCcccc-cccchhhHHHhhh
Q 000482 126 GSKQIFVKQYLVKWKGLSYLHC-TWVPEKEFLKAFK 160 (1464)
Q Consensus 126 ~~k~~~~~EYLVKWkg~Sy~H~-tWvpe~~L~~~~~ 160 (1464)
+. +| .|.-| -|+||-.+.+.-+
T Consensus 342 gT----------~w---AHvsCALwIPEVsie~~ek 364 (893)
T KOG0954|consen 342 GT----------KW---AHVSCALWIPEVSIECPEK 364 (893)
T ss_pred CC----------ee---eEeeeeeccceeeccCHhh
Confidence 11 34 55566 8999998877543
No 196
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.06 E-value=0.00026 Score=83.52 Aligned_cols=71 Identities=31% Similarity=0.690 Sum_probs=56.1
Q ss_pred hhhhcccccccccccccCCCC-----eEecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCccccccccccccCccC
Q 000482 44 ERIVRIDAKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAG 118 (1464)
Q Consensus 44 ~~~~~~d~~~~~C~~C~~~g~-----ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~didkiL~wr~~P~~~~ 118 (1464)
+.+..+|.-++.|.+|..... ++.||+|.-+.|..|. .+..+|+|.|+|..|.-.. ..|..|-++|...+
T Consensus 184 epi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~---~~i~~C~fCps~dG 258 (669)
T COG5141 184 EPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGE---YQIRCCSFCPSSDG 258 (669)
T ss_pred cccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhcccc---cceeEEEeccCCCC
Confidence 334445566788999976533 9999999999999999 8889999999999998654 34567778888776
Q ss_pred C
Q 000482 119 D 119 (1464)
Q Consensus 119 ~ 119 (1464)
.
T Consensus 259 a 259 (669)
T COG5141 259 A 259 (669)
T ss_pred c
Confidence 4
No 197
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.97 E-value=0.017 Score=69.26 Aligned_cols=62 Identities=31% Similarity=0.390 Sum_probs=48.1
Q ss_pred EEEeeccccccccCccCCCEEEEecCCC------C-----------hhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHH
Q 000482 681 CFLLSTRAGGLGINLATADTVIIYDSDW------N-----------PHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 743 (1464)
Q Consensus 681 vfLlSTrAgg~GINL~~Ad~VIi~D~dW------N-----------P~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~ 743 (1464)
.+++||..+...+.+.+.-.|| ||.+ | |..-.||..|++|.|.+++-..|+|+|+..++-.
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 3789999999888887765554 6643 4 4445799999999999999999999998766544
Q ss_pred H
Q 000482 744 M 744 (1464)
Q Consensus 744 I 744 (1464)
|
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 3
No 198
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=96.95 E-value=0.00014 Score=83.17 Aligned_cols=25 Identities=52% Similarity=0.929 Sum_probs=23.4
Q ss_pred HHHHhhccCCCcccccccchhhHHH
Q 000482 133 KQYLVKWKGLSYLHCTWVPEKEFLK 157 (1464)
Q Consensus 133 ~EYLVKWkg~Sy~H~tWvpe~~L~~ 157 (1464)
.||||||+|||+.||||+|+++|+.
T Consensus 26 vEYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 26 VEYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred eEEEEEecccccccCccCccccccC
Confidence 3999999999999999999999875
No 199
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.95 E-value=0.00018 Score=98.13 Aligned_cols=51 Identities=33% Similarity=0.918 Sum_probs=45.3
Q ss_pred ccccccccccCCC---CeEecCCCCCccccccCCCCCCCCCCCCCCCCccCCCC
Q 000482 51 AKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 101 (1464)
Q Consensus 51 ~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 101 (1464)
.....|.+|...+ +++.|+.|..+||+.|+.|.+..+|.|+|+|+.|....
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4567899998654 39999999999999999999999999999999998654
No 200
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.91 E-value=0.00041 Score=88.88 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=44.9
Q ss_pred ccccccccCCCCeEecCCCCCccccccCCCCCCCCCCCCCCCCccCC
Q 000482 53 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 99 (1464)
Q Consensus 53 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 99 (1464)
++.|..|.+.|+++||.+|++.||+.|..||+..+|+..|.|-.|..
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 67899999999999999999999999999999999999999999973
No 201
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.74 E-value=0.00052 Score=84.00 Aligned_cols=85 Identities=29% Similarity=0.701 Sum_probs=60.7
Q ss_pred ccccccCC----C-CeEecC--CCCCccccccCCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCCCCcccccc
Q 000482 55 SCQACGES----E-NLMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGS 127 (1464)
Q Consensus 55 ~C~~C~~~----g-~ll~Cd--~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~didkiL~wr~~P~~~~~~~~~~~~~ 127 (1464)
-|-||.+. + -|+.|| .|.-+.|..|. .+..+|.|.|||..|..-..- .-+.|+++|..++.-+..+.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqera--arvrCeLCP~kdGALKkTDn-- 80 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERA--ARVRCELCPHKDGALKKTDN-- 80 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhh--ccceeecccCcccceecccC--
Confidence 37788653 2 399999 59999999999 899999999999999863221 22678888887764332222
Q ss_pred hhhhHHHHHhhccCCCcccc-cccchhhHHH
Q 000482 128 KQIFVKQYLVKWKGLSYLHC-TWVPEKEFLK 157 (1464)
Q Consensus 128 k~~~~~EYLVKWkg~Sy~H~-tWvpe~~L~~ 157 (1464)
-||.|.-| -++||..+-.
T Consensus 81 ------------~GWAHVVCALYIPEVrFgN 99 (900)
T KOG0956|consen 81 ------------GGWAHVVCALYIPEVRFGN 99 (900)
T ss_pred ------------CCceEEEEEeeccceeecc
Confidence 24666666 6788776543
No 202
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.71 E-value=0.0061 Score=77.53 Aligned_cols=137 Identities=19% Similarity=0.251 Sum_probs=84.5
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEccccHHH--------HHHHH-HHHCCCCeEEEEEcChhHHH
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRN--------WEREF-ATWAPQMNVVMYVGTSQARN 374 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP~sll~q--------W~~E~-~k~~P~l~vvvy~G~~~~R~ 374 (1464)
..-++=+-+|||+|||.+-+-++..|... +...|+||||.-.+.. -.+.| +.++.+.+.-.|.-+...
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~-- 150 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI-- 150 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH--
Confidence 34456678899999999999988888664 5569999999644421 23334 444433322222211110
Q ss_pred HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hcccCC-------------Cc-------e
Q 000482 375 IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKP-------------IK-------W 431 (1464)
Q Consensus 375 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---~~~L~~-------------i~-------w 431 (1464)
..+.+ . ......|++.+...+.++ ...+.. -. -
T Consensus 151 --~~~~~--~--------------------~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r 206 (985)
T COG3587 151 --EKFKF--K--------------------SNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR 206 (985)
T ss_pred --HHHhh--c--------------------cCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC
Confidence 00000 0 123456777777776655 221111 00 1
Q ss_pred eEEEeccccccCCcchHHHHHHHhcccccEEeecccc
Q 000482 432 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 468 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTP 468 (1464)
-+|||||-|++... .+.+.++..+.....|=.+||-
T Consensus 207 PIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 207 PIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred CEEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 37999999999876 7889999999988888888883
No 203
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=96.61 E-value=0.00091 Score=57.89 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=28.5
Q ss_pred HHHHhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhhh
Q 000482 133 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 175 (1464)
Q Consensus 133 ~EYLVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~~f~kk 175 (1464)
.+|||||+|+++.+|||+|...|... ...+.+|..+
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 48999999999999999999998631 2356677654
No 204
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.52 E-value=0.011 Score=71.66 Aligned_cols=133 Identities=16% Similarity=0.212 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh----cCC----eEEEEEcCCCHHHHHHHHHHHhccCCCc
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 679 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~----~g~----~~~ridGs~s~~eRq~~Id~Fn~~~s~~ 679 (1464)
.+.|+....+++..+...|-|+|-||...+..+++-...+. -|- .+..+.|+-..++|.++-...- .+.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CCe
Confidence 56788888899999999999999999998876654332221 111 1334668888888877765542 355
Q ss_pred eEEEeeccccccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHH
Q 000482 680 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 745 (1464)
Q Consensus 680 ~vfLlSTrAgg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TvEE~I~ 745 (1464)
.+-+++|.|+.+||++-..|.|+....+.+-+++.|..|||+|-... ...| +.+..+.||...+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLav-yva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAV-YVAFLGPVDQYYM 647 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEE-EEEeccchhhHhh
Confidence 66899999999999999999999999999999999999999996433 2223 2344566776554
No 205
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.49 E-value=0.022 Score=63.37 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=69.3
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHHHHHHCCCCeEEEE
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 366 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy 366 (1464)
+-..|...++-|. +..-+++.-..|+|||+.|++....+...+ ..+++|+-|..-... ++ -|.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~---~l-Gflp------- 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE---DL-GFLP------- 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc---cc-ccCC-------
Confidence 4568999988773 667889999999999999999988877654 347777777553322 21 1122
Q ss_pred EcChhHH------HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 367 VGTSQAR------NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 367 ~G~~~~R------~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
|+..+. -.....+..+....-. .......|-+.+...++. ..++..+||||||+
T Consensus 70 -G~~~eK~~p~~~p~~d~l~~~~~~~~~~--------------~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQ 129 (205)
T PF02562_consen 70 -GDLEEKMEPYLRPIYDALEELFGKEKLE--------------ELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQ 129 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHH--------------HHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGG
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHhHH--------------HHhhcCeEEEEehhhhcC-----ccccceEEEEeccc
Confidence 221111 1111111111111000 000122244444333321 22455899999999
Q ss_pred ccCCcchHHHHHHHhcccccEEeecccccCCCH
Q 000482 441 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 473 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl 473 (1464)
++.. ..+...+..+....++.++|-|.|.+.
T Consensus 130 N~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 130 NLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp G--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred CCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 8643 344556677778899999999977654
No 206
>PRK10536 hypothetical protein; Provisional
Probab=96.44 E-value=0.023 Score=65.02 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=84.4
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH-hCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEE
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 366 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~-~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy 366 (1464)
+-..|...+.++ ..+..+++.-+.|+|||+.++++..... ......++|+=|.-.. .|.-.|.|
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLP------- 124 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLP------- 124 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCC-------
Confidence 556888888877 3456888999999999999999988654 4333345554443322 23334444
Q ss_pred EcChhHHH------HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEecccc
Q 000482 367 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 367 ~G~~~~R~------~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 440 (1464)
|+..++- +....+..+... .... .. ....-.|-|.+...++. ..+.-++||||||+
T Consensus 125 -G~~~eK~~p~~~pi~D~L~~~~~~~--~~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 125 -GDIAEKFAPYFRPVYDVLVRRLGAS--FMQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChH--HHHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 2222211 011111100000 0000 00 00012355555544432 12334789999999
Q ss_pred ccCCcchHHHHHHHhcccccEEeecccccCCC
Q 000482 441 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 472 (1464)
Q Consensus 441 rlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNn 472 (1464)
++.- ......+..+....+++++|-|-|.+
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 8754 45556677788889999999997655
No 207
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.011 Score=74.48 Aligned_cols=66 Identities=23% Similarity=0.390 Sum_probs=49.2
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEE--------EecC---------CC-ChhcHHHHHHhhhhcCCCCcEE
Q 000482 669 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI--------IYDS---------DW-NPHADLQAMARAHRLGQTNKVM 730 (1464)
Q Consensus 669 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI--------i~D~---------dW-NP~~d~QAigRahRiGQ~k~V~ 730 (1464)
+.-|.....+...++++|.++...|.++...+|| +||+ +| +-+.--||-|||+|+|- -+
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Cc
Confidence 3457776777777899999999999999999887 3444 34 34445689999988874 46
Q ss_pred EEEEEeC
Q 000482 731 IFRLITR 737 (1464)
Q Consensus 731 VyrLvt~ 737 (1464)
.|||++.
T Consensus 697 cYRLYSS 703 (1172)
T KOG0926|consen 697 CYRLYSS 703 (1172)
T ss_pred eeehhhh
Confidence 7888754
No 208
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.12 E-value=0.0054 Score=71.36 Aligned_cols=58 Identities=31% Similarity=0.388 Sum_probs=49.6
Q ss_pred CCccchhhhhhhccCCCCceEEEEEecccccccccccccccccchHHHHHHHHHhhcc
Q 000482 191 PEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 248 (1464)
Q Consensus 191 pe~~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~~~~~~ 248 (1464)
++...|++|+++|...|..+|||||+|-|=.+.|||.+.+...+...|+.|..-....
T Consensus 46 ~~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 46 EEEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred cchhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 3456899999999888889999999999999999999986667789999999754433
No 209
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.03 E-value=0.013 Score=70.74 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=49.5
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC-C-cEEEEEcc
Q 000482 280 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAPL 344 (1464)
Q Consensus 280 P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~-~-p~LIVvP~ 344 (1464)
|-+++-...+|-|.+-..-+......+++|+|-+..|+|||+.-++++....-..+ . .-||-|..
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 34444457899999988888888899999999999999999998888765543322 2 45666653
No 210
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.96 E-value=0.0065 Score=61.94 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=26.7
Q ss_pred eEEEeccccccCCcchHHHHHHHhc--ccccEEeecccc
Q 000482 432 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 468 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~~Sk~~~al~~l--~~~~rLLLTGTP 468 (1464)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25555566555 566789999999
No 211
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.95 E-value=0.014 Score=62.92 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=54.9
Q ss_pred HhcCceEEEEecchhhHHHHHHHHhhcCC--eEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecc--ccccccCccC-
Q 000482 623 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLAT- 697 (1464)
Q Consensus 623 ~~~g~KVLIFSq~~~~LdiL~~~L~~~g~--~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTr--Agg~GINL~~- 697 (1464)
...+.++|||......++.+.+++...+. .+..+.- +...+..+++.|..... .+|+++. ...+|||++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 34567999999999999999999976542 1122221 24578899999987443 3677777 8899999984
Q ss_pred -CCEEEEecCCC
Q 000482 698 -ADTVIIYDSDW 708 (1464)
Q Consensus 698 -Ad~VIi~D~dW 708 (1464)
+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 88999998886
No 212
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.87 E-value=0.0045 Score=83.30 Aligned_cols=179 Identities=26% Similarity=0.404 Sum_probs=99.1
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCc--hHHHHHHHHHHHHhC-CCCcEEEEEccccHHHHHHHHHHHCCCCeE
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWEREFATWAPQMNV 363 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLG--KTiqaIa~l~~l~~~-~~~p~LIVvP~sll~qW~~E~~k~~P~l~v 363 (1464)
.+.++|.....-... .......+++..|+| ||+.+..+....... .....++++|..+..+|..+...++ ....
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKF-NIRL 160 (866)
T ss_pred ccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhc-cccc
Confidence 455666665432211 222238899999999 899887776665444 3448999999888899998887653 1111
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCce---eEEEe
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 436 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~w---~~VIv 436 (1464)
.+..-.. .+........+. .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEG-LRYLLKQYDAYN---------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhh-hhhhhhhhcccc---------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 1111000 000000000000 000000033444443332 223344456 89999
Q ss_pred ccccccCCcc---------hHHHHHHHhcccc--------cEEeecccccCCCHHHHHHHHHhhcCCCCCC
Q 000482 437 DEGHRLKNKD---------SKLFSSLKQYSTR--------HRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 490 (1464)
Q Consensus 437 DEAHrlKN~~---------Sk~~~al~~l~~~--------~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~ 490 (1464)
||+|.+.+.. ...+..+...... ...++++||.+....+++....++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987742 2333333333211 2347899999999888888777777766655
No 213
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.85 E-value=0.0028 Score=76.80 Aligned_cols=50 Identities=28% Similarity=0.712 Sum_probs=40.1
Q ss_pred ccccccCCC-----CeEecCCCCCccccccCCCCCCCC----CCCCCCCCccCCCCCcc
Q 000482 55 SCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAP----PSGSWRCPECVSPLNDI 104 (1464)
Q Consensus 55 ~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~~----p~~~W~C~~C~~~~~di 104 (1464)
.|.+|+.++ .||.|+.|...||..|+.|+.++. +...|+|..|......+
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 388887543 399999999999999999987653 56779999999765444
No 214
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.76 E-value=0.015 Score=72.03 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=63.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 364 (1464)
.+|---|..||.-. -++.=.||.-..|+|||++..++++++.....+|+||++|. -.+.|-..-|.+- +++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 46888999999776 45666899999999999999999999998888899999996 4567777777663 58887
Q ss_pred EEEcC
Q 000482 365 MYVGT 369 (1464)
Q Consensus 365 vy~G~ 369 (1464)
-+...
T Consensus 483 Rl~ak 487 (935)
T KOG1802|consen 483 RLCAK 487 (935)
T ss_pred eeehh
Confidence 76543
No 215
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.56 E-value=0.065 Score=69.63 Aligned_cols=125 Identities=11% Similarity=0.035 Sum_probs=84.4
Q ss_pred CCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhcc
Q 000482 315 MGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 393 (1464)
Q Consensus 315 mGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~~~ 393 (1464)
.|+|||-..+.++...+..+. .+||++|. +++.|+...|+..+++..+++||..-...+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 399999999999988877653 69999995 88899999999999767899999876665544433110
Q ss_pred ccCccccccccccccccEEEecHHHHHhhhcccCCC-ceeEEEecccccc--CCcchHH-----HHHHHh-cccccEEee
Q 000482 394 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI-KWQCMIVDEGHRL--KNKDSKL-----FSSLKQ-YSTRHRVLL 464 (1464)
Q Consensus 394 ~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i-~w~~VIvDEAHrl--KN~~Sk~-----~~al~~-l~~~~rLLL 464 (1464)
..+...|||-|...+ |-.+ +..+|||||=|.- |...+.. ...++. ...-..+|-
T Consensus 237 -----------~~G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLg 299 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIG 299 (665)
T ss_pred -----------hCCCCcEEEEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 124567888887654 2222 4578999998864 3322211 111122 123345777
Q ss_pred cccc
Q 000482 465 TGTP 468 (1464)
Q Consensus 465 TGTP 468 (1464)
|+||
T Consensus 300 SaTP 303 (665)
T PRK14873 300 GHAR 303 (665)
T ss_pred CCCC
Confidence 9999
No 216
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.52 E-value=0.042 Score=66.50 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=32.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEccccHHHHHHH
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWERE 353 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP~sll~qW~~E 353 (1464)
.|+.-..|+|||+.++.++..+... .....+++|++..+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 4667789999999999999998322 23377888887777665443
No 217
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.37 E-value=0.14 Score=56.85 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
+|-+-|.+++..+.. ...+-.+|.-..|+|||.....+...+...+ .++++++|....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHH
Confidence 477899999987732 2334577888999999987666555555543 589999997654
No 218
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.29 E-value=0.014 Score=67.39 Aligned_cols=50 Identities=32% Similarity=0.357 Sum_probs=42.9
Q ss_pred cchhhhhhhccCCCCceEEEEEecccccccccccccccccchHHHHHHHHH
Q 000482 194 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 244 (1464)
Q Consensus 194 ~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~~ 244 (1464)
..+|-||-+|..-|..+|||||+|-.--..|||.+..|.+ ..+|..|...
T Consensus 11 fAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 11 FAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 3678999999888999999999999999999999998864 5678888764
No 219
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.07 E-value=0.077 Score=69.00 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccc-cHHHHHHHHHHHCCCCeEE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~s-ll~qW~~E~~k~~P~l~vv 364 (1464)
..|-+.|..+|.... ......++.-..|+|||.++++++..+...+. ++||++|.. .+.+....+... +++++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 468899999997752 34467888899999999999999888776543 899999964 456666666553 34444
Q ss_pred EE
Q 000482 365 MY 366 (1464)
Q Consensus 365 vy 366 (1464)
-+
T Consensus 230 Rl 231 (637)
T TIGR00376 230 RL 231 (637)
T ss_pred Ee
Confidence 44
No 220
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.37 E-value=0.0088 Score=47.64 Aligned_cols=33 Identities=36% Similarity=0.968 Sum_probs=19.3
Q ss_pred CeEecCCCCCccccccCCCCCCCCCCC-CCCCCccC
Q 000482 64 NLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 98 (1464)
Q Consensus 64 ~ll~Cd~C~~~~H~~Cl~P~l~~~p~~-~W~C~~C~ 98 (1464)
.|+.|+.|.-..|..|. .+...|.+ .|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 48999999999999999 67777766 79999884
No 221
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.01 E-value=0.36 Score=63.81 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHH
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 353 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~~p~LIVvP~sll~qW~~E 353 (1464)
+..|.+-|.+++..+ ..++-.+|.-..|+|||..+-+++..+...+ ..++++++|...-.....+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999866 3456789999999999988877777665543 2478889998766554443
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.99 E-value=0.41 Score=48.53 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=27.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
+...+|.-+.|.|||..+-.++..+... ..+++.+......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhh
Confidence 6678899999999998777777666422 2355555444333
No 223
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=93.54 E-value=0.12 Score=64.47 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE 353 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E 353 (1464)
..|-+-|..++.+.. .+..-.++--..|+|||.+..-++..+...+ ..+||.+|. -.+.|-..-
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHHH
Confidence 457789999998773 2335567888999999999988888887665 589999996 446666553
No 224
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.50 E-value=0.17 Score=57.14 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
+..+||-|.+.+..|+.. ..+.|.++-.-||-|||-..+-++..++..+..=+-+|||++++.+-..-+..-
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 567999999999888754 567899999999999999999888888887777788999999998877766543
No 225
>PLN03025 replication factor C subunit; Provisional
Probab=93.44 E-value=0.69 Score=55.21 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.+.||.-+.|+|||..+.+++..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 467999999999999999999887643
No 226
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.40 E-value=0.18 Score=65.04 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH----HHHHHHHHhC---------C------------------
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS----IAFLASLFGE---------R------------------ 334 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa----Ia~l~~l~~~---------~------------------ 334 (1464)
.++++-|+.-+..++.......+|+|-..+|+|||+.- +|+..++... .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 56799999999999999999999999999999999874 3444443300 0
Q ss_pred --------CC-cEEEEEcc--ccHHHHHHHHHHHCCCCeEEEE
Q 000482 335 --------IS-PHLVVAPL--STLRNWEREFATWAPQMNVVMY 366 (1464)
Q Consensus 335 --------~~-p~LIVvP~--sll~qW~~E~~k~~P~l~vvvy 366 (1464)
.+ |.++.+-. +-|.|-.+|+.+..=.++.+++
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVL 142 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVL 142 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEe
Confidence 01 55677764 4488899999886533444443
No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.18 E-value=3.5 Score=54.08 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+..++ ..||.-.-|+|||..+..|...|...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3444444444444432 34788999999999999999888643
No 228
>PRK04296 thymidine kinase; Provisional
Probab=92.89 E-value=0.34 Score=53.44 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=25.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 46778999999999999888775543 36666654
No 229
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.82 E-value=0.44 Score=61.40 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC----CcEEEEEccccH
Q 000482 290 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTL 347 (1464)
Q Consensus 290 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~----~p~LIVvP~sll 347 (1464)
+.|..++... ..+.-+||.-..|+|||.++..++..+..... ..+++++|+.--
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7999998665 44677899999999999998888877754321 368999997443
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.59 E-value=2 Score=57.60 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.||.-..|+|||..+..|+..|...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5789999999999999999988653
No 231
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=92.40 E-value=0.11 Score=44.09 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=24.0
Q ss_pred CccCHHHHHHHHHHHHhhcccchHHhhh
Q 000482 1084 KFWKEEHDSLLLRAVLKHGYGRWQAIVD 1111 (1464)
Q Consensus 1084 ~~w~~eeDr~LL~~i~k~Gyg~We~Ik~ 1111 (1464)
..||++||..|+.+|.+||-++|..|-.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~ 29 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK 29 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3699999999999999999999987754
No 232
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=92.17 E-value=0.38 Score=64.13 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=77.0
Q ss_pred hhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH-----HHHHHHHHHHCCCCeEEEEEcChhHHHHH
Q 000482 302 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNII 376 (1464)
Q Consensus 302 ~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll-----~qW~~E~~k~~P~l~vvvy~G~~~~R~~i 376 (1464)
.+..+.+++++...|+|||++|=. +.+.....+.+.-++|...+ ..|.+-|... -++.++...|...---.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~--a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk- 1230 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAEL--ALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK- 1230 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHH--HhcCCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH-
Confidence 345678899999999999987632 22224455688999998665 4588888877 47777777765432111
Q ss_pred HHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccCCcch
Q 000482 377 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS 447 (1464)
Q Consensus 377 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~S 447 (1464)
...+-+|+|.|++.+..-. ... .-++.|+||.|-+.....
T Consensus 1231 ----------------------------l~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1231 ----------------------------LLQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred ----------------------------HhhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccCC
Confidence 1235689999999876542 222 357899999999986443
No 233
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.85 E-value=0.13 Score=63.72 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.4
Q ss_pred EecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHH
Q 000482 312 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLR 348 (1464)
Q Consensus 312 ADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~ 348 (1464)
-+.+|+|||+++.++|.+++..+...+|..|-. +++.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nile 40 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILE 40 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHH
Confidence 467999999999999999999988899998874 4443
No 234
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.81 E-value=10 Score=48.64 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=49.1
Q ss_pred eEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCC-----HHHHHHHHHHHhcc---CCCceEEEeeccccccccCccC--
Q 000482 628 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-----GAERQIRIDRFNAK---NSSRFCFLLSTRAGGLGINLAT-- 697 (1464)
Q Consensus 628 KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s-----~~eRq~~Id~Fn~~---~s~~~vfLlSTrAgg~GINL~~-- 697 (1464)
-|++|-..-..|..+..++...|+- .+|.|.-+ ..--..+++.|... +.+.+.|-+--.-.++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 4888888888888888888766552 12222111 00024566666422 1232333334455689999986
Q ss_pred CCEEEEecCCCC
Q 000482 698 ADTVIIYDSDWN 709 (1464)
Q Consensus 698 Ad~VIi~D~dWN 709 (1464)
+..||+...|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 889999888873
No 235
>PRK06526 transposase; Provisional
Probab=91.77 E-value=0.43 Score=55.15 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=37.3
Q ss_pred HHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHH
Q 000482 294 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 355 (1464)
Q Consensus 294 egvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 355 (1464)
.+..|+ ..+.+.+|.-..|+|||..+.++...+...+. +++++ +...|.+++.
T Consensus 90 ~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred hcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 344666 56788999999999999999999888766542 44443 3345666654
No 236
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.64 E-value=0.4 Score=55.55 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.+.+|.-+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999998887776543
No 237
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.61 E-value=0.75 Score=54.92 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.4
Q ss_pred HHHHHHHhhccCC--cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 295 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 295 gvnwL~~~~~~~~--~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
.+.+|......+. +.+|.-+.|+|||..+.+++..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3444444445554 788999999999999999998886543
No 238
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.57 E-value=0.47 Score=61.38 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEccccH
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL 347 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~---~~p~LIVvP~sll 347 (1464)
..+.|..++.-. ..++-+||.-..|+|||.++..++..+.... ...+++++|+.--
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkA 211 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKA 211 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHH
Confidence 458999998654 4567789999999999999888888775532 2368888997544
No 239
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=91.31 E-value=0.082 Score=67.87 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=60.5
Q ss_pred cccccccccCCCCeEecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCCCCcccccchhhh
Q 000482 52 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 131 (1464)
Q Consensus 52 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~didkiL~wr~~P~~~~~~~~~~~~~k~~~ 131 (1464)
...-|.+|..++.+.+|+.|++.||.+|+.|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 345677899999999999999999999999988888888888877653
Q ss_pred HHHHHhhccCCCcccccccchhh
Q 000482 132 VKQYLVKWKGLSYLHCTWVPEKE 154 (1464)
Q Consensus 132 ~~EYLVKWkg~Sy~H~tWvpe~~ 154 (1464)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 12799999999999999998874
No 240
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.14 E-value=0.65 Score=57.97 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|......++ ..|+.-+.|.|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444444433 35899999999999999999887653
No 241
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=91.03 E-value=0.23 Score=41.17 Aligned_cols=29 Identities=38% Similarity=0.714 Sum_probs=26.0
Q ss_pred CccCHHHHHHHHHHHHhhcccchHHhhhC
Q 000482 1084 KFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1112 (1464)
Q Consensus 1084 ~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D 1112 (1464)
..|+.+||..|+.++.+||.++|..|...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~ 30 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKE 30 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 57999999999999999999999887554
No 242
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.96 E-value=1.8 Score=53.03 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=35.5
Q ss_pred ceeEEEeccccccCCcch---HHHHHHHhccc--ccEEeecccccCCCHHHHHHHHHhhc
Q 000482 430 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLD 484 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~S---k~~~al~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~ 484 (1464)
..++||||++.+...... .+...+..... ...|.|+||-=++.+.+.+.-...+.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~ 313 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFS 313 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 468999999999864332 23333333332 35688999987777777776555443
No 243
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=90.64 E-value=0.24 Score=40.33 Aligned_cols=29 Identities=45% Similarity=0.759 Sum_probs=25.8
Q ss_pred ccCHHHHHHHHHHHHhhcccchHHhhhCc
Q 000482 1085 FWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1113 (1464)
Q Consensus 1085 ~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~ 1113 (1464)
.||.+||..|+.++.+||.++|..|...-
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~ 29 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL 29 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc
Confidence 49999999999999999999998876553
No 244
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.63 E-value=0.96 Score=54.77 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|.+++..|...+..++ ..++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4456677777777666 47789999999999999999998764
No 245
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.50 E-value=1.4 Score=46.39 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=36.8
Q ss_pred EEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccC--CCEEEEecCCC
Q 000482 654 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 708 (1464)
Q Consensus 654 ~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~--Ad~VIi~D~dW 708 (1464)
+.+.| .+..+...+++.|.....+ .+|+++....+|||++. +..||+.-.|+
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 33434 3344578899999864432 36777777999999985 78899887665
No 246
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.40 E-value=0.68 Score=46.31 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 350 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW 350 (1464)
+...+|.-.+|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 45678999999999999888887765543 356666665554443
No 247
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.00 E-value=1.7 Score=50.15 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHhhccCC-cEEEEecCCCchHHHHHHHHHHHH
Q 000482 289 HPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 331 (1464)
Q Consensus 289 rpyQlegvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~l~ 331 (1464)
.+.+..+++.+......+. .++|.-+.|+|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455667777766555544 477899999999988777665543
No 248
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=89.67 E-value=0.11 Score=64.92 Aligned_cols=59 Identities=36% Similarity=0.791 Sum_probs=43.2
Q ss_pred cccccccccCCCC-----eEecCCCCCccccccCCCCCCCC-CCCCCCCCccCC-----CCCcccccccc
Q 000482 52 KDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVS-----PLNDIDKILDC 110 (1464)
Q Consensus 52 ~~~~C~~C~~~g~-----ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~-----~~~didkiL~w 110 (1464)
.+.+|.+|+..|. |+.|..|...||.+|+.--+... -.+.|.|+.|+- ..+++-+.+.|
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~C 86 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLC 86 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccc
Confidence 4678999987654 99999999999999996444332 244599999973 23566677766
No 249
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.58 E-value=0.19 Score=62.83 Aligned_cols=47 Identities=32% Similarity=0.809 Sum_probs=39.7
Q ss_pred ccccccccCCCCeEecCCCCCccccccCCCCCCC-CCCCCCCCCccCC
Q 000482 53 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 99 (1464)
Q Consensus 53 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~-~p~~~W~C~~C~~ 99 (1464)
-..|.+|..+|++++|+.|+.+||..|..+++.. .+.+.|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 6789999999999999999999999999998872 2345688887764
No 250
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.40 E-value=11 Score=49.01 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.6
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
..||.-..|.|||..|.+++..+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4589999999999999999888754
No 251
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.36 E-value=1.4 Score=46.32 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=34.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhccCCCceEEEeeccc--cccccCccC--CCEEEEecCCC
Q 000482 654 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 708 (1464)
Q Consensus 654 ~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrA--gg~GINL~~--Ad~VIi~D~dW 708 (1464)
+.+.+... .+...+++.|.......-.+|+++.. .++||||+. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444332 34478899998643310124555544 899999985 78899988775
No 252
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.96 E-value=1.9 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.0
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
..||.-..|+|||..+..++..|..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4588999999999999999998865
No 253
>PRK08181 transposase; Validated
Probab=88.91 E-value=3.3 Score=48.38 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEE
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 341 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIV 341 (1464)
+..-|..++..+......+.+.+|.-..|+|||..+.++...+...+ ..++.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~ 140 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFT 140 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeee
Confidence 55677777754422236788899999999999999999888776653 244443
No 254
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.72 E-value=3.7 Score=51.08 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=34.3
Q ss_pred ceeEEEeccccccCCcchH---HHHHHHh--cccccEEeecccccCCCHHHHHHHHHhhcC
Q 000482 430 KWQCMIVDEGHRLKNKDSK---LFSSLKQ--YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 485 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~Sk---~~~al~~--l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p 485 (1464)
.+++||||-+-+....... +...+.. ......|+|++|+-++.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4689999998765443222 2222221 122457889999877777777776665544
No 255
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.62 E-value=2.2 Score=47.88 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=29.1
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHH
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 349 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~q 349 (1464)
.+.+.+|.-+.|+|||..+.++.......+ .+ ++.+..+.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~-~~~i~~~~~~~ 79 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG-KS-AIYLPLAELAQ 79 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC-Cc-EEEEeHHHHHH
Confidence 456788999999999999988887765432 13 34444444443
No 256
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.34 E-value=1.6 Score=51.94 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=41.8
Q ss_pred cccccCCCCCCCCCCCc-HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHH-HhCC-CCcEEEEEccccH
Q 000482 273 FQQYEHSPEFLSGGSLH-PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER-ISPHLVVAPLSTL 347 (1464)
Q Consensus 273 ~~~~~~~P~~~~g~~Lr-pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l-~~~~-~~p~LIVvP~sll 347 (1464)
+..+...+..+.|...| -+|.-++..|.. ..-.=+.|.-.-|+|||+-|+|...+- ...+ ..+++|-=|.--+
T Consensus 213 i~~l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 213 ILLLKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred EEecccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 33344455555554444 388888887621 223446788899999999887665443 2222 2355554444333
No 257
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.81 E-value=0.79 Score=53.88 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCC---CcEEEEE
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVA 342 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~~~---~p~LIVv 342 (1464)
+.+.+|.-+.|+|||..|.++...+...+. ++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 346889999999999999888887765432 2555444
No 258
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.79 E-value=8.9 Score=48.93 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhccC--Cc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 293 LEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 293 legvnwL~~~~~~~--~~-~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
...+..|......+ .+ .|+.-..|+|||..|..++..+...
T Consensus 22 ~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 22 APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 33444444433332 23 4789999999999999999888653
No 259
>PHA02533 17 large terminase protein; Provisional
Probab=87.65 E-value=3.2 Score=53.08 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh-CCCCcEEEEEcc
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPL 344 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~-~~~~p~LIVvP~ 344 (1464)
..|+|+|..-+..| ..++-.++.-.=..|||..+.+++.++.- .....+++++|.
T Consensus 58 f~L~p~Q~~i~~~~----~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIM----HKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHH----hcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 56999999988766 23444567778889999988766554332 333377888884
No 260
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=87.63 E-value=5.7 Score=49.33 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=91.6
Q ss_pred hHHHHHH-HHHHHHH--hcCceEEEEecchhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000482 610 GKLQLLD-KMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 686 (1464)
Q Consensus 610 gKl~~L~-kLL~~l~--~~g~KVLIFSq~~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlST 686 (1464)
.++.... ++|+.+. ....++|||...---.=.|..+|...++.|+.++--++..+-.++-..|..+... ++|+|-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEh
Confidence 3454443 3677766 3456899998766656668999999999999999999999999999999875443 455565
Q ss_pred ccc-ccccCccCCCEEEEecCCCChhcHHHHHHhhhhcCC----CCcEEEEEEEeC
Q 000482 687 RAG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 737 (1464)
Q Consensus 687 rAg-g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ----~k~V~VyrLvt~ 737 (1464)
|+- =.=..+..+.+||+|.+|-+|+-|...+.-...-.+ .....|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 552 334556779999999999999999888865554333 234555555554
No 261
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=87.36 E-value=9.2 Score=50.02 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.0
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..||.-..|+|||..+..++..+...
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 46889999999999999998887543
No 262
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.36 E-value=5.5 Score=47.06 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=21.9
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
+.+|.-+.|+|||..+-+++..+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999988888877543
No 263
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=87.28 E-value=0.43 Score=50.59 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=26.7
Q ss_pred eEecCCCCCccccccCCCCCCCC------------------CCCCCCCCccC
Q 000482 65 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 98 (1464)
Q Consensus 65 ll~Cd~C~~~~H~~Cl~P~l~~~------------------p~~~W~C~~C~ 98 (1464)
|++|..|.|+||+.+|+|+-... .+.+|.|.+|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 89999999999999997764321 13479999984
No 264
>CHL00181 cbbX CbbX; Provisional
Probab=87.03 E-value=1 Score=53.06 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
+.+.+|.-+.|+|||..|-++...+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3457899999999999999888877654
No 265
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=86.95 E-value=1.2 Score=37.70 Aligned_cols=42 Identities=12% Similarity=0.416 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHhcCCCccchhhhchhhc-CCCHHHHHHHHHH
Q 000482 971 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYGIL 1014 (1464)
Q Consensus 971 F~~w~Rr~Fv~a~~kyG~~~~~~~~ia~el~-~Ks~eEvk~Ya~l 1014 (1464)
|+..+-..|++++.+||.+ +|..|+..|. ++|..+++.+...
T Consensus 4 Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 4 WTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 6777778999999999976 4789999999 9999999977543
No 266
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=86.35 E-value=1.5 Score=35.51 Aligned_cols=42 Identities=12% Similarity=0.388 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHH
Q 000482 971 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGIL 1014 (1464)
Q Consensus 971 F~~w~Rr~Fv~a~~kyG~~~~~~~~ia~el~~Ks~eEvk~Ya~l 1014 (1464)
|+..+...|++++.+||.. +|..|+..+.++|..+|+.|...
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHH
Confidence 6777888999999999963 47899999999999999988654
No 267
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.26 E-value=2.1 Score=56.94 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHHHHHHhhccC--CcE-EEEecCCCchHHHHHHHHHHHHhC
Q 000482 294 EGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 294 egvnwL~~~~~~~--~~~-ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..+..|...+..+ .+. ||.-+.|.|||..+..|+..+...
T Consensus 23 ~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 23 HVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 3333344434433 344 799999999999999999888653
No 268
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.11 E-value=21 Score=44.16 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+.++ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444445555555554 236788999999999999999988653
No 269
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=85.68 E-value=2.9 Score=54.44 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+..++ + .|+.-+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3444445555555543 2 4789999999999999999888654
No 270
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.58 E-value=3 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.1
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..|+.-..|.|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46789999999999999999887654
No 271
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.57 E-value=1 Score=57.86 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=96.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHH-HHHHCCCCeE
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE-FATWAPQMNV 363 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~-sll~qW~~E-~~k~~P~l~v 363 (1464)
....|||++-++-|... .-..+.+.-..-+|||...+.++.+.....++|+|+|.|. .....|..+ |....
T Consensus 15 ~~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 46889999988766221 1356778888899999999999999888888999999996 455666533 33322
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccC
Q 000482 364 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 443 (1464)
Q Consensus 364 vvy~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlK 443 (1464)
..+..-+..+... . .+..+... ..+... .-.+.++...+ ...|......+|++||..+.-
T Consensus 88 ---~~sp~l~~~~~~~------~-----~~~~~~t~-~~k~f~-gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSPS------K-----SRDSGNTI-LYKRFP-GGFLYLVGANS----PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCch------h-----hcccCCch-hheecC-CCEEEEEeCCC----CcccccCCcCEEEEechhhcc
Confidence 1111111111100 0 00000000 000001 11233333222 346778888999999999983
Q ss_pred ----Ccch---HHHHHHHhcccccEEeecccccCCCHHHHHH
Q 000482 444 ----NKDS---KLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 478 (1464)
Q Consensus 444 ----N~~S---k~~~al~~l~~~~rLLLTGTPlqNnl~EL~s 478 (1464)
+... ...+....+....++++..||.......+..
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHH
Confidence 2333 3334444555678899999996664333333
No 272
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.26 E-value=3.2 Score=52.63 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+..++ ..||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4445555555444443 67899999999999999999888643
No 273
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=85.17 E-value=0.67 Score=55.96 Aligned_cols=65 Identities=26% Similarity=0.549 Sum_probs=45.1
Q ss_pred ccccccccccC-----CCCeEecCCCCCccccccCCCCC-CCCCC-------CCCCCCccCCCCCccccccccccccCcc
Q 000482 51 AKDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPPS-------GSWRCPECVSPLNDIDKILDCEMRPTVA 117 (1464)
Q Consensus 51 ~~~~~C~~C~~-----~g~ll~Cd~C~~~~H~~Cl~P~l-~~~p~-------~~W~C~~C~~~~~didkiL~wr~~P~~~ 117 (1464)
..-.+|.+|-. .|++|.||.|+-..|-.|..--- ..+|+ ..|||..|...... =+|+++|...
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~----P~CElCPn~~ 192 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL----PHCELCPNRF 192 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC----CccccCCCcC
Confidence 34458999964 36699999999999999984320 12232 45999999875422 4577788766
Q ss_pred CC
Q 000482 118 GD 119 (1464)
Q Consensus 118 ~~ 119 (1464)
+.
T Consensus 193 Gi 194 (707)
T KOG0957|consen 193 GI 194 (707)
T ss_pred Cc
Confidence 53
No 274
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.00 E-value=5.3 Score=47.44 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=24.6
Q ss_pred eeEEEeccccccCCcc--hHHHHHHHhcccccEEeeccccc
Q 000482 431 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPL 469 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~--Sk~~~al~~l~~~~rLLLTGTPl 469 (1464)
..+|||||+|++.... ..+...+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4689999999983322 22333344455666788887653
No 275
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.96 E-value=4.2 Score=49.61 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHh
Q 000482 292 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
|...+..+...+..++ + .+|.-+.|+|||..|-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4555555555555442 3 489999999999999999888753
No 276
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.93 E-value=4.9 Score=45.88 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
....+|.-+.|+|||-.+.++...+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4567899999999998887777766543
No 277
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=84.91 E-value=0.64 Score=55.98 Aligned_cols=32 Identities=34% Similarity=0.702 Sum_probs=28.6
Q ss_pred CCccCHHHHHHHHHHHHhhcccchHHhhhCcc
Q 000482 1083 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKD 1114 (1464)
Q Consensus 1083 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~ 1114 (1464)
.-.||-+|+..||-++..||||||+.|-.-..
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIG 103 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIG 103 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc
Confidence 46899999999999999999999998876653
No 278
>PRK08116 hypothetical protein; Validated
Probab=84.90 E-value=7 Score=45.63 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 350 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW 350 (1464)
+.+.+|.-+.|+|||..+.+++..+...+ .+++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHH
Confidence 44688999999999999999999987763 366555434444433
No 279
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=84.52 E-value=0.45 Score=55.52 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=21.7
Q ss_pred HHHHhhccCCCcccccccchh-hHHH
Q 000482 133 KQYLVKWKGLSYLHCTWVPEK-EFLK 157 (1464)
Q Consensus 133 ~EYLVKWkg~Sy~H~tWvpe~-~L~~ 157 (1464)
.+|||||+|++.-.|||+|+. .+.|
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~~~~C 89 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEHNLDC 89 (270)
T ss_pred ceeeeecCCCCCccccCCchhhcccc
Confidence 479999999999999999997 4444
No 280
>PRK14974 cell division protein FtsY; Provisional
Probab=84.35 E-value=5.9 Score=47.73 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=29.2
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc----ccHHHHHHH
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL----STLRNWERE 353 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~----sll~qW~~E 353 (1464)
-.++.-..|.|||.++..++..+...+. +++++..- ....||..-
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~Dt~R~~a~eqL~~~ 190 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGDTFRAGAIEQLEEH 190 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCCcCcHHHHHHHHHH
Confidence 3567889999999988888877765433 55555432 334555443
No 281
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=84.06 E-value=1.8 Score=35.66 Aligned_cols=45 Identities=16% Similarity=0.458 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHH
Q 000482 970 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1016 (1464)
Q Consensus 970 GF~~w~Rr~Fv~a~~kyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~ 1016 (1464)
.|+..+...|++++.+||.. +|..|+..+.++|..+++.+...++
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 47777888999999999964 4689999999999999998866543
No 282
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=83.27 E-value=0.55 Score=49.83 Aligned_cols=47 Identities=28% Similarity=0.790 Sum_probs=33.6
Q ss_pred ccccccC------CCCeEecCCCCCccccccCCCCCC------CCCCCCC--CCCccCCCC
Q 000482 55 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLK------APPSGSW--RCPECVSPL 101 (1464)
Q Consensus 55 ~C~~C~~------~g~ll~Cd~C~~~~H~~Cl~P~l~------~~p~~~W--~C~~C~~~~ 101 (1464)
.|.+|+. .|.|+.|-+|..+||..||-|--. ++..+.+ .|..|....
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 4778853 245999999999999999976532 2334443 788888644
No 283
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=83.22 E-value=3.5 Score=49.57 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=35.0
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.++|+|.....-+...-.-....++.-+.|.|||..|.+|+..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36888888876665542222335678899999999999999998754
No 284
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.21 E-value=8.7 Score=47.12 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=25.7
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
....|.-..|.|||.++..++..+...+ ..+++|.-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G-kkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEEec
Confidence 3456788899999999888888776543 25555544
No 285
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.04 E-value=4.6 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=21.4
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
..||.-+.|+|||..|-+++..+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3589999999999999988888754
No 286
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.97 E-value=5.4 Score=51.06 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHh
Q 000482 294 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 294 egvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
..++.|...+..++ ..|+.-+.|+|||..|..++..+..
T Consensus 23 ~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 23 HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33344444444433 3578999999999999999988864
No 287
>PF13173 AAA_14: AAA domain
Probab=82.12 E-value=7.1 Score=39.96 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=24.9
Q ss_pred eeEEEeccccccCCcchHHHHHHHhcccccEEeecccc
Q 000482 431 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 468 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTP 468 (1464)
-.+||+||+|++.+....+-..+.. ..+.++++||+-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~ 98 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSS 98 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccc
Confidence 3579999999998644433333332 245789999985
No 288
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.85 E-value=5.1 Score=48.52 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHhh-c--cCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 289 HPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 289 rpyQlegvnwL~~~~-~--~~~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
|..|++.+.-.+..+ . ...+.+|.-+.|+|||..+-.++..+..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 788888874443332 2 2356889999999999999888887753
No 289
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=81.76 E-value=5.9 Score=51.36 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|-..+..|...+..++ ..||.-..|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3344444544444443 57889999999999999999988654
No 290
>PF13245 AAA_19: Part of AAA domain
Probab=81.67 E-value=3.6 Score=38.59 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC---CCCcEEEEEccccHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLR 348 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~---~~~p~LIVvP~sll~ 348 (1464)
+.-.++.-..|+|||.+++..+.++... ...++||++|....-
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa 55 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAA 55 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHH
Confidence 4445668999999999999888888742 234899999975543
No 291
>PRK08727 hypothetical protein; Validated
Probab=81.60 E-value=6.1 Score=45.08 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.9
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
..+|.-..|+|||-.+.++...+...+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999988888877766543
No 292
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=81.39 E-value=5.5 Score=52.67 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=86.6
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc-cccHHHHHHHHHHHCCCCeEEE
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVM 365 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP-~sll~qW~~E~~k~~P~l~vvv 365 (1464)
.|-.-|++|+... .....-.++---.|+|||.+..+++..|...+ +.+|+.+= .+.+.|-.--+..+. +. ++
T Consensus 669 ~LN~dQr~A~~k~---L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g-kkVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA---LAAEDYALILGMPGTGKTTTISLLIKILVALG-KKVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH---HhccchheeecCCCCCchhhHHHHHHHHHHcC-CeEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999998543 23333344445689999998888888777665 35666655 577888766665543 11 22
Q ss_pred EEcChhHH-HHHHHhhhcCCCCc-hhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccC
Q 000482 366 YVGTSQAR-NIIREYEFYFPKNP-KKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 443 (1464)
Q Consensus 366 y~G~~~~R-~~i~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlK 443 (1464)
-.|....- ..++++-. +... .+ .+..-........||.+|---+. ...|....||++|||||-.+-
T Consensus 742 RLG~~~kih~~v~e~~~--~~~~s~k--------s~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTL--TNETSEK--------SYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ecCCccccchHHHHHhc--ccccchh--------hHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccc
Confidence 23433221 12233221 1000 00 00000001123345555543332 334556679999999997654
Q ss_pred CcchHHHHHHHhcccccEEeecccccC
Q 000482 444 NKDSKLFSSLKQYSTRHRVLLTGTPLQ 470 (1464)
Q Consensus 444 N~~Sk~~~al~~l~~~~rLLLTGTPlq 470 (1464)
-+ -.|--+....+..|-|-+.|
T Consensus 810 lP-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 810 LP-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred cc-----hhhhhhhhcceEEEeccccc
Confidence 22 23444556677788887655
No 293
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=81.38 E-value=1 Score=61.29 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=43.1
Q ss_pred cccccccccCCCC--eEecCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 000482 52 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 100 (1464)
Q Consensus 52 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 100 (1464)
....|..|..+.. ++.|+.|...||..|+.|++..++.+.|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3567999988764 349999999999999999999999999999999864
No 294
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.14 E-value=4.7 Score=44.82 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
.+|.-.+|.|||.++.-+++++... ..++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecC
Confidence 4678899999999998888888766 345555554
No 295
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=81.12 E-value=4.8 Score=47.21 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcc--CCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 291 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 291 yQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
+|...|+-|...... ..+.++.-..|+|||-++++|...|+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 677777766544433 4457788899999999999999998763
No 296
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=81.03 E-value=21 Score=46.24 Aligned_cols=131 Identities=20% Similarity=0.219 Sum_probs=90.8
Q ss_pred eeecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHH
Q 000482 536 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 615 (1464)
Q Consensus 536 ~iv~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L 615 (1464)
..++..||..|+...+.|......- .-+++|-| + + -.|||..+.
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~------------~~M~RLlQ---------G---D------------VGSGKTvVA 300 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASP------------VPMNRLLQ---------G---D------------VGSGKTVVA 300 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCc------------hhhHHHhc---------c---C------------cCCCHHHHH
Confidence 3567899999999998886542110 01111111 1 0 147776544
Q ss_pred HHHHHHHHhcCceEEEEecc----hhhHHHHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecccc-c
Q 000482 616 DKMMVKLKEQGHRVLIYSQF----QHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-G 690 (1464)
Q Consensus 616 ~kLL~~l~~~g~KVLIFSq~----~~~LdiL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAg-g 690 (1464)
.--+-...+.|..+.+-... ....+-+.++|...|+.+..++|++++.+|.+++++..++..+ +++-|.|. -
T Consensus 301 ~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---ivVGTHALiQ 377 (677)
T COG1200 301 LLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EEEEcchhhh
Confidence 33333345668888877764 2345678888888899999999999999999999999776555 78999995 7
Q ss_pred cccCccCCCEEEEec
Q 000482 691 LGINLATADTVIIYD 705 (1464)
Q Consensus 691 ~GINL~~Ad~VIi~D 705 (1464)
..++++..-.||+=+
T Consensus 378 d~V~F~~LgLVIiDE 392 (677)
T COG1200 378 DKVEFHNLGLVIIDE 392 (677)
T ss_pred cceeecceeEEEEec
Confidence 788888887777644
No 297
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=80.66 E-value=12 Score=49.96 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=43.3
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
+..|-+-|.+++..+. ..++-++|.-..|+|||...-+++..+... ...+++++|....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~-g~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAA-GYRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhC-CCeEEEEeCcHHH
Confidence 3568999999998763 224567899999999998876665554443 2478888997654
No 298
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=80.57 E-value=1.5 Score=38.87 Aligned_cols=26 Identities=42% Similarity=0.837 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHhhcccchHHhhhC
Q 000482 1086 WKEEHDSLLLRAVLKHGYGRWQAIVDD 1112 (1464)
Q Consensus 1086 w~~eeDr~LL~~i~k~Gyg~We~Ik~D 1112 (1464)
||.+||..|+.++.+||. +|..|-.-
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~ 26 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH 26 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH
Confidence 999999999999999995 79888443
No 299
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=80.35 E-value=10 Score=48.39 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 294 EGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 294 egvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..+..|......+. + .|+.-+.|.|||..+.+++..+...
T Consensus 21 ~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 21 SVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 33444444444433 2 3789999999999999999988653
No 300
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=80.21 E-value=6 Score=51.03 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=61.2
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcc-ccHHHHHHH----HHHHCCCCeEEEEEcChhHHHHHHH
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIRE 378 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP~-sll~qW~~E----~~k~~P~l~vvvy~G~~~~R~~i~~ 378 (1464)
+.+-.++.-.==-|||......+..+.....+ .+++++|. ++...--.| +++|+|...+-...|. .| .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 34445666677789999877776666544334 89999994 444444444 4567765443332331 11 1
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccCC
Q 000482 379 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 444 (1464)
Q Consensus 379 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN 444 (1464)
+.++++ .+--+.+.|- .....++...+++|||||||-|+.
T Consensus 327 --i~f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 327 --FSFPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred --EEecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCH
Confidence 111111 0112222211 334557777999999999999975
No 301
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=80.21 E-value=11 Score=45.05 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
.++|+|......+...+..++ ..++....|+||+..|.+|+..+....
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 589999999888877766544 467889999999999999999987654
No 302
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=80.15 E-value=7.5 Score=41.77 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 292 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
|.+.+..|...+..++ + .|+.-+.|.||+..|.+++..++...
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5556666666665543 3 57888899999999999999988754
No 303
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=80.02 E-value=8.8 Score=46.88 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 292 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
|..++..|...+..++ ..++.-..|+|||..|.+|+..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5566666666666653 467899999999999999999998643
No 304
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.89 E-value=37 Score=44.23 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 296 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 296 vnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
+..|...+..+ ...|+.-+.|+|||..|..|+..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34444444443 34567999999999999999988864
No 305
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.88 E-value=10 Score=48.36 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=72.1
Q ss_pred hhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc-CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEee
Q 000482 607 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 685 (1464)
Q Consensus 607 ~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~-g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlS 685 (1464)
..|||......++......|.++||.+........+.+.|+.. |..+..++|.++..+|..+..+...++.. +++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 3689999988888888888999999999988877777777543 67889999999999998877766544333 6777
Q ss_pred ccccccccCccCCCEEEEec
Q 000482 686 TRAGGLGINLATADTVIIYD 705 (1464)
Q Consensus 686 TrAgg~GINL~~Ad~VIi~D 705 (1464)
|+..- =+-+.....||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 77632 23455677777665
No 306
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.76 E-value=11 Score=47.31 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEccccH
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 347 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP~sll 347 (1464)
...+|.-..|+|||..+-++...+.....+ .++.+.....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 347899999999999988888887765433 34444333333
No 307
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.72 E-value=5.6 Score=51.67 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+..++ + .|+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555554444443 3 4789999999999999999888653
No 308
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.19 E-value=17 Score=47.21 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~--~~-~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+..+ .+ .|+.-..|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 444555554444443 23 4789999999999999999888643
No 309
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.15 E-value=13 Score=48.26 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHh
Q 000482 292 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
|...+..|...+..+. + .||.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555655555443 2 388999999999999999988753
No 310
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=79.07 E-value=4.9 Score=47.04 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-C--CcEEEEEccccH
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I--SPHLVVAPLSTL 347 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-~--~p~LIVvP~sll 347 (1464)
|.+-|..+|++ ..+..++-...|+|||.+.+.-+.++.... . ..+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888764 356677777899999999998888887654 3 389999997553
No 311
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=78.75 E-value=1.6 Score=47.34 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=25.8
Q ss_pred ccccEEEecHHHHHhhhc--cc--CCCceeEEEeccccccCC
Q 000482 407 IKFDVLLTSYEMINLDSA--SL--KPIKWQCMIVDEGHRLKN 444 (1464)
Q Consensus 407 ~kfdVvItSYe~l~~d~~--~L--~~i~w~~VIvDEAHrlKN 444 (1464)
...||||++|..+..... .+ -..+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467999999999875422 12 123446899999999854
No 312
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=78.44 E-value=5.8 Score=50.50 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=71.3
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcc-cc----HHHHHHHHHHHCCCCeEEEEEcChhHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-ST----LRNWEREFATWAPQMNVVMYVGTSQARNIIR 377 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP~-sl----l~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~ 377 (1464)
.+.-.+.|. +=--|||...+.+|..++..-.+ .+..|+-. ++ +..-...+.+|+|.-+++.-.|..-
T Consensus 201 KQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI------ 273 (668)
T PHA03372 201 KQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI------ 273 (668)
T ss_pred hccceEEEe-cccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE------
Confidence 344444443 66679999988888888775445 77788773 32 2334555678998766533222110
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccCCcchHHHHHHHhcc
Q 000482 378 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 457 (1464)
Q Consensus 378 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~ 457 (1464)
-+.++ ..+.-++..| ..+.+.++...|++|+|||||-++...-...--+...+
T Consensus 274 --~~s~p---------------------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~ 326 (668)
T PHA03372 274 --SIDHR---------------------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQN 326 (668)
T ss_pred --EEecC---------------------CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhccc
Confidence 01111 0111122222 12345677889999999999998754322222222223
Q ss_pred cccEEeeccc
Q 000482 458 TRHRVLLTGT 467 (1464)
Q Consensus 458 ~~~rLLLTGT 467 (1464)
....+.+|.|
T Consensus 327 ~~KiIfISS~ 336 (668)
T PHA03372 327 TTKIIFISST 336 (668)
T ss_pred CceEEEEeCC
Confidence 3445556544
No 313
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.14 E-value=11 Score=47.90 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCC--cE-EEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~--~~-ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|......+. +. ++.-+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4444555544444443 33 899999999999999999888643
No 314
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=77.94 E-value=13 Score=46.11 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.1
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEE
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 342 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVv 342 (1464)
..+|.-..|+|||..+-++...+.....+ .++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46799999999999998888887765433 444443
No 315
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=77.45 E-value=2.7 Score=37.24 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=25.2
Q ss_pred CCccCHHHHHHHHHHHHhhcccch---HHhh
Q 000482 1083 GKFWKEEHDSLLLRAVLKHGYGRW---QAIV 1110 (1464)
Q Consensus 1083 ~~~w~~eeDr~LL~~i~k~Gyg~W---e~Ik 1110 (1464)
...||+|+-...|.+|..+|.|.| ..|.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~ 33 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRIL 33 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 457999999999999999999999 7664
No 316
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.32 E-value=14 Score=46.80 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 294 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 294 egvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
..+..|...+..+ ...||.-..|+|||..|..++..+..
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 3344444444443 35789999999999999888887754
No 317
>PRK05580 primosome assembly protein PriA; Validated
Probab=77.03 E-value=15 Score=48.51 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhh-cCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 686 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~-~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlST 686 (1464)
.|||......++......|.++||.+........+.+.|.. -|..+..++|+++..+|.+...+...+... ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 47898888777777777899999999998887777777754 378899999999999998887777654433 67788
Q ss_pred cccccccCccCCCEEEEecC
Q 000482 687 RAGGLGINLATADTVIIYDS 706 (1464)
Q Consensus 687 rAgg~GINL~~Ad~VIi~D~ 706 (1464)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7432 245667777777653
No 318
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=77.00 E-value=13 Score=44.00 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=28.0
Q ss_pred cccCCCceeEEEeccccccC-Ccch---HHHHHHHhcccccE--Eeecccc
Q 000482 424 ASLKPIKWQCMIVDEGHRLK-NKDS---KLFSSLKQYSTRHR--VLLTGTP 468 (1464)
Q Consensus 424 ~~L~~i~w~~VIvDEAHrlK-N~~S---k~~~al~~l~~~~r--LLLTGTP 468 (1464)
..|+.+.-.+|||||.|++- +... ....+|+.+....+ +.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 45666778899999999963 3332 33444455544332 5667876
No 319
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=76.97 E-value=14 Score=50.68 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 285 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
|..|.+-|.+++..+. ....-++|.-..|+|||.+.-+ +..++......++.++|...-
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~G~~V~~~ApTGkA 402 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGV-AREAWEAAGYEVRGAALSGIA 402 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEecCcHHH
Confidence 4579999999998763 2234578999999999987443 444433333478888887654
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=76.85 E-value=11 Score=46.00 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.2
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 354 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~ 354 (1464)
..+.-.+|.-++|.|||..++.++..+...+ +++|.|.-.....|.....
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHH
Confidence 4455578899999999999988887765432 4788877655555544333
No 321
>PRK11054 helD DNA helicase IV; Provisional
Probab=76.80 E-value=12 Score=49.60 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEccccHHHHHHH-HHHHCC--
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 359 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~---~~p~LIVvP~sll~qW~~E-~~k~~P-- 359 (1464)
..|.+.|.++|. ...++.++....|+|||.+.++-+.+|.... ...+|+++......+..++ +....+
T Consensus 195 ~~L~~~Q~~av~------~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVV------NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHh------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 458999999985 2335567777899999999999999988653 2389999998777776655 555553
Q ss_pred CCeEEEEEcChhHHHHHHH
Q 000482 360 QMNVVMYVGTSQARNIIRE 378 (1464)
Q Consensus 360 ~l~vvvy~G~~~~R~~i~~ 378 (1464)
++.+..||+- ...++++
T Consensus 269 ~v~v~TFHSl--al~Il~~ 285 (684)
T PRK11054 269 DITARTFHAL--ALHIIQQ 285 (684)
T ss_pred CcEEEeHHHH--HHHHHHH
Confidence 2334444432 2344444
No 322
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=76.71 E-value=13 Score=46.74 Aligned_cols=45 Identities=16% Similarity=-0.009 Sum_probs=29.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEccccHHHHH
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNWE 351 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP~sll~qW~ 351 (1464)
...+|.-+.|+|||..+-++..++.....+ .++.|.+...+....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 347799999999998888887777654333 555554444443333
No 323
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.60 E-value=12 Score=46.10 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=32.4
Q ss_pred ceeEEEeccccccCCcc---hHHHHHHHhcc-cccEEeecc--cccCCC--HHHHHHHHH
Q 000482 430 KWQCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTG--TPLQNN--LDELFMLMH 481 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~---Sk~~~al~~l~-~~~rLLLTG--TPlqNn--l~EL~sLL~ 481 (1464)
.-++|+||-.|.+.+.. -.++..+..+. ....|+||+ +|-+-+ ..+|.+-+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh
Confidence 34789999999998774 34455555553 334889998 674433 234555444
No 324
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.37 E-value=12 Score=48.81 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+..+ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 444555555554544 345889999999999999999988653
No 325
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=76.17 E-value=21 Score=46.53 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000482 290 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 344 (1464)
Q Consensus 290 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~ 344 (1464)
|+=+.-++-+...+.+.-.++++ +=|-|||..+..++..+.......++|.+|.
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~ 225 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEIDIVVQAQR 225 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCCeEEEECCC
Confidence 34445566666666666665554 6899999887666655554222378999994
No 326
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=76.05 E-value=9.5 Score=45.89 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEE
Q 000482 291 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 367 (1464)
Q Consensus 291 yQlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~ 367 (1464)
.|...+..|...+..++ + .++.-+-|.|||..|..++..+........ .|-........-.....|+++.+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~---~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV---EPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 35555566655555442 3 488999999999999999998875431100 02222233333333345666666554
Q ss_pred cC
Q 000482 368 GT 369 (1464)
Q Consensus 368 G~ 369 (1464)
|.
T Consensus 87 ~~ 88 (329)
T PRK08058 87 GQ 88 (329)
T ss_pred cc
Confidence 43
No 327
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.97 E-value=13 Score=41.82 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=23.8
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..+...+|.-+.|+|||..+.++...+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345678999999999999888887766543
No 328
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.62 E-value=12 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.4
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
..|+.-+.|+|||..|-.++..+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3489999999999999999888754
No 329
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=75.61 E-value=0.61 Score=61.32 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=42.7
Q ss_pred cccccccccccCCCCeEecCC-CCCcccc-ccCCCC--CCCCCCCCCCCCccCCCC
Q 000482 50 DAKDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPL 101 (1464)
Q Consensus 50 d~~~~~C~~C~~~g~ll~Cd~-C~~~~H~-~Cl~P~--l~~~p~~~W~C~~C~~~~ 101 (1464)
.....-|.+|+..+.+++|++ |+..||+ .||+-. -..++++-|+|++|.-..
T Consensus 425 wfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 425 WFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred hceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 346677999999999999986 9999999 999732 345788999999997543
No 330
>PRK04132 replication factor C small subunit; Provisional
Probab=75.34 E-value=8.9 Score=51.45 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=29.6
Q ss_pred ceeEEEeccccccCCc-chHHHHHHHhcccccEEeecccccCCCHHHHHH
Q 000482 430 KWQCMIVDEGHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 478 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~-~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~s 478 (1464)
++.+|||||||++-.. ...+.+.+.......+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 4678999999999532 222333344445667888887765444333333
No 331
>PRK06893 DNA replication initiation factor; Validated
Probab=74.69 E-value=18 Score=41.06 Aligned_cols=26 Identities=12% Similarity=-0.044 Sum_probs=21.1
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..+|.-..|+|||-.+.++...+...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999888888776554
No 332
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=74.58 E-value=12 Score=42.91 Aligned_cols=51 Identities=27% Similarity=0.325 Sum_probs=32.4
Q ss_pred ccCC-cEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHH------HHHHHHHH
Q 000482 304 SKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR------NWEREFAT 356 (1464)
Q Consensus 304 ~~~~-~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~------qW~~E~~k 356 (1464)
..+. -+.+.-++|+|||+..=+++..+-.. .-.+|+.|+.++. -|..++..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 3444 45678899999999887555554322 2455788876653 36655543
No 333
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.55 E-value=27 Score=42.80 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEc
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 343 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP 343 (1464)
..++..+|.-.+|.|||.++..++..+... +..++.+|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 446677899999999999998888776433 3335555554
No 334
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.25 E-value=0.89 Score=51.44 Aligned_cols=46 Identities=15% Similarity=0.420 Sum_probs=34.3
Q ss_pred ccccccccCC---------CCeEecCCCCCccccccCCCCCCC---CCCCCCCCCccC
Q 000482 53 DDSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLKA---PPSGSWRCPECV 98 (1464)
Q Consensus 53 ~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~P~l~~---~p~~~W~C~~C~ 98 (1464)
...|.+|-++ ..+++|..|.-++|.+|+.-+..- +-.-.|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 4568888654 239999999999999999654322 224679999986
No 335
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=74.01 E-value=2.1 Score=37.35 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.7
Q ss_pred ccccccccC----CCCeEecCCCCCccccccCCC
Q 000482 53 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 82 (1464)
Q Consensus 53 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~P 82 (1464)
...|.+|+. +++++.|..|...||-.|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999985 577999999999999999854
No 336
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=73.90 E-value=16 Score=47.23 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.|+.-+.|+|||..|-.|+..+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5679999999999999888887543
No 337
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=73.87 E-value=14 Score=44.42 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 288 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
++|+|...-.-|...+..++ ..++.-+.|+||+..|.+|+..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888887777777666643 345788999999999999999987643
No 338
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=73.51 E-value=19 Score=45.22 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=26.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEc
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP 343 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP 343 (1464)
...+|.-+.|+|||..+-++...+.....+ .++.|..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 357899999999999888888877665443 4454443
No 339
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=72.94 E-value=5.8 Score=43.39 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=32.3
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 355 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 355 (1464)
.++.|.+|.-.+|.|||..|.+++..+...+ .+++.+.- ..+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~~----~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFITA----SDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH----HHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEeec----Cceecccc
Confidence 5678899999999999999999999888743 25555543 34444554
No 340
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=72.58 E-value=13 Score=50.43 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhc--cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~--~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|.+-+..++..+. ...+.||.-+.|.|||..+=+++..+...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 3344666655333 35689999999999999987777776543
No 341
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=72.19 E-value=23 Score=45.87 Aligned_cols=43 Identities=19% Similarity=0.010 Sum_probs=28.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEccccHHHH
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 350 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~~~~-p~LIVvP~sll~qW 350 (1464)
..+|.-..|+|||..+.++..++.....+ .++.+.-..++..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 37788999999999888888877654333 44444433334333
No 342
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=72.11 E-value=12 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.1
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHH
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLAS 329 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~ 329 (1464)
.-.+.||.-..|.|||..|-.+..+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999876555554
No 343
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.10 E-value=18 Score=45.97 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHh
Q 000482 292 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
|...+..|......+. + .++.-+.|.|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445555555555432 3 367999999999999888887753
No 344
>PRK04195 replication factor C large subunit; Provisional
Probab=71.36 E-value=29 Score=44.02 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=29.3
Q ss_pred CcHHHHHHH-HHHHHhhcc---CCcEEEEecCCCchHHHHHHHHHHH
Q 000482 288 LHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 330 (1464)
Q Consensus 288 LrpyQlegv-nwL~~~~~~---~~~~ILADemGLGKTiqaIa~l~~l 330 (1464)
.++.++..+ .|+ ..|.+ ...++|.-+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 455555555 444 44444 4678899999999999888777765
No 345
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.07 E-value=11 Score=43.53 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHH
Q 000482 289 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 355 (1464)
Q Consensus 289 rpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 355 (1464)
.-.++..+.-+...+..+.+.+|.-..|.|||..|+|+...+... ..+++++.-..++.+++..+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHHHHh
Confidence 334555554444444688899999999999999999999999833 337777766666666555543
No 346
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.85 E-value=2.8 Score=51.79 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=41.0
Q ss_pred ccccccccccCCCCeEecCCCCCccccccCCCCCCCC-CCCCCCCCccCCC
Q 000482 51 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP 100 (1464)
Q Consensus 51 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~~ 100 (1464)
..+.+|..|.-+|..+.|+.|-|+||..|+.|-.... ...-|.|+.|..-
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 4578899999999999999999999999998755432 2345999999863
No 347
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=70.82 E-value=1.7 Score=41.47 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=28.9
Q ss_pred cccccCCCC---eEecCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 000482 56 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 100 (1464)
Q Consensus 56 C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 100 (1464)
|..|.-+|+ ++.+ .|...||+.|+..-+..... .=.||-|+.+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSS-KGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccccC-CCCCCCcCCe
Confidence 344444454 4444 49999999999877776422 3379999864
No 348
>PRK05642 DNA replication initiation factor; Validated
Probab=70.37 E-value=18 Score=41.33 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=24.6
Q ss_pred eEEEeccccccCCcc---hHHHHHHHhcc-cccEEeeccc
Q 000482 432 QCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGT 467 (1464)
Q Consensus 432 ~~VIvDEAHrlKN~~---Sk~~~al~~l~-~~~rLLLTGT 467 (1464)
++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 579999999886543 33555555544 3567888887
No 349
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=70.27 E-value=29 Score=44.92 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.|+.-+.|.|||..|.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 5799999999999999999888643
No 350
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=69.78 E-value=21 Score=47.27 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=87.2
Q ss_pred ecccCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccchhHHHHHHHhhhhHHHHHHH
Q 000482 538 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 617 (1464)
Q Consensus 538 v~v~ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~HP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~k 617 (1464)
....++..|...+..|.... -+.+++|+.++. .|||.++...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~GvT---------------GSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGVT---------------GSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCCC---------------CCcHHHHHHH
Confidence 34578888888888775431 235677777643 6999999999
Q ss_pred HHHHHHhcCceEEEEecchhhHHHHHHHHhhc-CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEeecccc
Q 000482 618 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 689 (1464)
Q Consensus 618 LL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~-g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlSTrAg 689 (1464)
++....++|+.+||...-+.....+...|+.+ |.++..++++.+..+|.....+...+.. .+++-||.+
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEechh
Confidence 99999999999999999988877777777554 7899999999999999998888865443 366777663
No 351
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=69.59 E-value=26 Score=42.92 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHhh-c--cCCcEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 289 HPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 289 rpyQlegvnwL~~~~-~--~~~~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
|+-|++-+.-.+... . ...+++|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 566666654333222 2 345689999999999999988888776543
No 352
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.55 E-value=35 Score=44.31 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.|+.-+-|.|||..+..++..+...
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4788899999999999999888643
No 353
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=69.07 E-value=35 Score=45.77 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHH-HHhhcc-C-CcEE-EEecCCCchHHHHHHHHHHHHh
Q 000482 288 LHPYQLEGLNFL-RFSWSK-Q-THVI-LADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 288 LrpyQlegvnwL-~~~~~~-~-~~~I-LADemGLGKTiqaIa~l~~l~~ 332 (1464)
=|+-|+..|..+ ...... + .++| |.-.+|+|||.++-.++..|..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 477888887444 333332 2 2344 8999999999999988877743
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=68.97 E-value=17 Score=43.98 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHHhhccCC-cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 288 LHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
++|+|...-+-|.....+-. ..++.-..|.|||..|..|+..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 46788777666655433333 345788999999999999999987653
No 355
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=68.97 E-value=25 Score=44.04 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=26.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
...++.-..|.|||.++..++.++...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4467888999999999998888887654434444433
No 356
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=68.89 E-value=1.7e+02 Score=38.95 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=37.9
Q ss_pred CEEEEecCCCChhcHHHHHHhhhhcCCC---CcEEEEEEEeCCCHHHH--HHHHHHHHHHHHHHHh
Q 000482 699 DTVIIYDSDWNPHADLQAMARAHRLGQT---NKVMIFRLITRGSIEER--MMQMTKKKMVLEHLVV 759 (1464)
Q Consensus 699 d~VIi~D~dWNP~~d~QAigRahRiGQ~---k~V~VyrLvt~~TvEE~--I~~~a~~K~~L~~~Vi 759 (1464)
..||+|+++-++-.- +-+.+.. +...||.++..+|+||. ...+.+.|+.+.+++-
T Consensus 546 ~yvi~y~~~~~~vRq------iEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIr 605 (892)
T KOG0442|consen 546 RYVIMYESDLTFVRQ------IEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIR 605 (892)
T ss_pred ceEEEEcCCCCceee------eeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHh
Confidence 458999998665432 3333333 45679999999999884 4456677888777764
No 357
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=68.51 E-value=1.6 Score=58.60 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=22.8
Q ss_pred HHHHhhccCCCcccccccchhhHHH
Q 000482 133 KQYLVKWKGLSYLHCTWVPEKEFLK 157 (1464)
Q Consensus 133 ~EYLVKWkg~Sy~H~tWvpe~~L~~ 157 (1464)
.+|||||+|.+|-.|||++++.+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 5999999999999999999988754
No 358
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.27 E-value=11 Score=42.65 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.3
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
+-.+.|++-..|.|||..+.+++..|+..
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 34578999999999999999988888653
No 359
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=68.11 E-value=31 Score=44.70 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 295 GLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 295 gvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.+..|...+..+ ...|+.-+.|.|||..|..++..+...
T Consensus 24 iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 24 IKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444343 335789999999999999999988654
No 360
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=67.82 E-value=5.7 Score=52.95 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=71.1
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHH-HHHhCCCCcEEEEEccccH-----HHHHHHHHHHCCCCeEEEEEcChhHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLA-SLFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIR 377 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~-~l~~~~~~p~LIVvP~sll-----~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~ 377 (1464)
+...+.++.+.+|.|||+.+-..+. .+.....+++.+|+|...+ ..|..-+. .|+++++-..|....-
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd---- 1014 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD---- 1014 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC----
Confidence 4456778999999999999844444 4444444599999995333 45765443 2466676666553221
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC----ceeEEEeccccccCCc
Q 000482 378 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 445 (1464)
Q Consensus 378 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i----~w~~VIvDEAHrlKN~ 445 (1464)
.......+++|||++............ ....+|+||.|-++..
T Consensus 1015 -------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 112346789999999875543322222 2456999999988654
No 361
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=67.70 E-value=9.5 Score=48.36 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-----CCcEEEEEccccHHHHHH
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWER 352 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-----~~p~LIVvP~sll~qW~~ 352 (1464)
+.+-|-+.+. ..+++-.|+.-..|+|||..|+.=+++|+... .+|+||+.|+.++.....
T Consensus 213 IQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 213 IQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred hhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 4455655543 23555667888999999999988888876543 248999999988866543
No 362
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=67.64 E-value=28 Score=35.98 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 344 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~ 344 (1464)
.+|.-..|+|||..+..++..+... .++++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 4567789999999998888877553 3466666554
No 363
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=67.09 E-value=28 Score=46.20 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHH----HHHHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEE
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 683 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~Ld----iL~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfL 683 (1464)
.|||.....-.+-.....|.+++|.+.....+. .+..++...|+++..++|+++..+|...+.....+... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 578876544444344457899999998876554 45555666689999999999999999999988765444 56
Q ss_pred eeccc-cccccCccCCCEEEEecCC
Q 000482 684 LSTRA-GGLGINLATADTVIIYDSD 707 (1464)
Q Consensus 684 lSTrA-gg~GINL~~Ad~VIi~D~d 707 (1464)
+.|.+ ....+.+.....||+=+-+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 66654 4556778888887765443
No 364
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=67.01 E-value=20 Score=45.10 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=26.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
...+|.-+.|+|||..+-++...+...+ .+++.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEeeH
Confidence 4578889999999999888888876542 35554443
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.79 E-value=24 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHH
Q 000482 307 THVILADEMGLGKTIQSIAFLASL 330 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l 330 (1464)
.+.||.-+.|+|||..+-++...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998887766543
No 366
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=66.46 E-value=30 Score=41.50 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
.++|+|...-..+...+..++ ..++.-..|+||+..|..|+..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478888888877777665544 467889999999999999999987653
No 367
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=66.40 E-value=22 Score=46.92 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccC--Cc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 294 EGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 294 egvnwL~~~~~~~--~~-~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..+..|......+ .+ .|+.-+.|.|||..|-.++..+...
T Consensus 25 ~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 25 HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3344444434443 23 4789999999999999998887643
No 368
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.20 E-value=44 Score=39.18 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=29.9
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc-c---ccHHHHHH
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWER 352 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP-~---sll~qW~~ 352 (1464)
.+....+.-..|+|||..+..++..+...+ ..+.+|.- . ..+.||..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHH
Confidence 345667788899999998777776665432 34555544 2 35566654
No 369
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.12 E-value=27 Score=45.69 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+..|...+..+ ...|+.-..|.|||..|..|+..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 555666666655553 236789999999999999999888653
No 370
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=65.64 E-value=13 Score=37.31 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=24.4
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 310 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 310 ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
+|.-+.|.|||..+-.++..+. .+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhcc----cccccccccccc
Confidence 6777899999998888777751 256666655554
No 371
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.34 E-value=55 Score=41.87 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=25.6
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCC-CcEEEEE
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVA 342 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~-~p~LIVv 342 (1464)
.++..+|.-..|.|||.++..++..+...+. ..+.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 3555667788999999998777776654432 3455543
No 372
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=64.93 E-value=23 Score=42.79 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.++|+|...-..+...+..++ .-+++-+.|+||+..|.+|+.++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888877777766544 34688999999999999999998764
No 373
>PRK10865 protein disaggregation chaperone; Provisional
Probab=64.81 E-value=22 Score=48.30 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHHhh--ccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 296 LNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 296 vnwL~~~~--~~~~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
+..++..+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55555533 34568999999999999999888887654
No 374
>PLN03212 Transcription repressor MYB5; Provisional
Probab=64.50 E-value=6.6 Score=44.64 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.5
Q ss_pred CCccCHHHHHHHHHHHHhhcccchHHhh
Q 000482 1083 GKFWKEEHDSLLLRAVLKHGYGRWQAIV 1110 (1464)
Q Consensus 1083 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik 1110 (1464)
...||.|||-.|+..|.+||-++|..|-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IA 52 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLP 52 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 4579999999999999999999999884
No 375
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=63.91 E-value=15 Score=32.59 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHhcCCCccc-hhhhchhhc-CC-CHHHHHHHHHHHHH
Q 000482 970 GFSQNQRAAFVQILMRFGVGDFD-WKEFTPRLK-QK-SYEEIREYGILFLT 1017 (1464)
Q Consensus 970 GF~~w~Rr~Fv~a~~kyG~~~~~-~~~ia~el~-~K-s~eEvk~Ya~lF~~ 1017 (1464)
.+|+-+.+.|+.+++.||.+++. -+.|+..+. .. |..+|+..+..+..
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 35677788999999999986631 157777664 34 99999988776643
No 376
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=63.80 E-value=16 Score=46.51 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=23.7
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
....+++|.-+.|.|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34567899999999999998888877643
No 377
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=63.62 E-value=42 Score=36.62 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.7
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 307 THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
...+|.-+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 346789999999999999999988754
No 378
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=63.29 E-value=68 Score=35.65 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=39.2
Q ss_pred hcccCCCceeEEEeccccccCCc----chHHHHHHHhcccccEEeecccccCCCHHHHHHHHHhhc
Q 000482 423 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLD 484 (1464)
Q Consensus 423 ~~~L~~i~w~~VIvDEAHrlKN~----~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~ 484 (1464)
...+..-.|++||+||.-..-+. ...+...|..-+..--|.|||--.+..+.|+..++.-+.
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~ 173 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMR 173 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheecc
Confidence 44556678999999998665442 344555555545556799999855555555554444333
No 379
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=63.20 E-value=34 Score=39.01 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=17.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHH
Q 000482 307 THVILADEMGLGKTIQSIAFLAS 329 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~ 329 (1464)
.++||.-..|+|||..|-.++..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc
Confidence 46899999999999766554444
No 380
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=62.70 E-value=30 Score=40.81 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.9
Q ss_pred cCCc-EEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 305 KQTH-VILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 305 ~~~~-~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
+... .+|.-..|.|||..|.+++..+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 4455 78888999999999999999998653
No 381
>PRK11823 DNA repair protein RadA; Provisional
Probab=62.70 E-value=21 Score=44.91 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=40.9
Q ss_pred HHHHHHH-hhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 295 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 295 gvnwL~~-~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
+++.+.. .+..+.-.+|.-++|.|||..++.++..+... ..++|.|.-.....+......+
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHH
Confidence 4444432 23445567889999999999999888876533 2478888776666665544444
No 382
>PRK07952 DNA replication protein DnaC; Validated
Probab=61.49 E-value=26 Score=40.36 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhh---cc-CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 290 PYQLEGLNFLRFSW---SK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 290 pyQlegvnwL~~~~---~~-~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
+.|..++..+.... .. ..+.+|.-..|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 34666665553322 22 24678999999999999999999987653 255555 35666666553
No 383
>PLN03091 hypothetical protein; Provisional
Probab=61.07 E-value=8 Score=47.24 Aligned_cols=51 Identities=29% Similarity=0.529 Sum_probs=34.4
Q ss_pred CCccCHHHHHHHHHHHHhhcccchHHhhhCcccChHHHHHHHhcCCCCCCCCCC
Q 000482 1083 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPG 1136 (1464)
Q Consensus 1083 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~ 1136 (1464)
...|+.|||..|+..|.+||-++|..|-.-... .+..+..+.|..+-+.|+
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~---gRT~KQCRERW~NyLdP~ 64 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL---QRCGKSCRLRWINYLRPD 64 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhcc---CcCcchHhHHHHhccCCc
Confidence 457999999999999999999999988532111 122233344555555553
No 384
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=60.70 E-value=11 Score=40.97 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=37.2
Q ss_pred hcccCCCceeEEEeccccccCCc----chHHHHHHHhcccccEEeecccccCCCHHHHHHHHH
Q 000482 423 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 481 (1464)
Q Consensus 423 ~~~L~~i~w~~VIvDEAHrlKN~----~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~ 481 (1464)
...+..-.|++||+||.-..-+. ...+...|..-+...-+.|||.-.+..+.|+..++.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VT 152 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVT 152 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceee
Confidence 44555668999999998755332 234555665555566799999855444444444433
No 385
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=60.46 E-value=53 Score=35.46 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=36.5
Q ss_pred hcccCCCceeEEEeccccccCC----cchHHHHHHHhcccccEEeecccccCCCHHHHHHH
Q 000482 423 SASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFML 479 (1464)
Q Consensus 423 ~~~L~~i~w~~VIvDEAHrlKN----~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sL 479 (1464)
...+..-.+++||+||.=..-+ ....+...+..-....-++|||--.+..+.|+..+
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 3445556899999999876533 23355666665556667999998655544444433
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=60.41 E-value=49 Score=35.47 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=24.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
.++.-..|.|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778999999999998888876654323333344
No 387
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.06 E-value=4.7 Score=48.19 Aligned_cols=43 Identities=28% Similarity=0.657 Sum_probs=35.3
Q ss_pred cccccccC---CCCeEecCCCCCccccccCCCCCCCCCCCCCCCCccCC
Q 000482 54 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 99 (1464)
Q Consensus 54 ~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 99 (1464)
+.|.+|-+ .|+.|+-=-|...||..|.+|-|... .=+||-|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCC
Confidence 68999986 47777778899999999999987763 236999997
No 388
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=59.82 E-value=35 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASL 330 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l 330 (1464)
..+.||.-+.|+|||..|-++...+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999998877766543
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=59.61 E-value=21 Score=38.55 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
.+|+-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 47888999999999999988876443 4889998877777776666654
No 390
>CHL00095 clpC Clp protease ATP binding subunit
Probab=59.58 E-value=3.3e+02 Score=37.21 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.++.-++|.|||..|-+++..++..
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 5789999999999999998887654
No 391
>PRK10865 protein disaggregation chaperone; Provisional
Probab=59.44 E-value=5e+02 Score=35.73 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.2
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
..+|.-++|+|||..|-++...++.
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4678999999999999888877764
No 392
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=59.36 E-value=50 Score=42.02 Aligned_cols=59 Identities=22% Similarity=0.163 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCc------EEEEecCCCchHHHHHHHHHHH--HhCCCC-cEEEEEcc
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGERIS-PHLVVAPL 344 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~------~ILADemGLGKTiqaIa~l~~l--~~~~~~-p~LIVvP~ 344 (1464)
..|.|||...+.-|.-.+.++.+ ++|...=|=|||..+.+++.+. +....+ .++|++|.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999998766444444443 4788899999998766555443 333333 88899885
No 393
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=59.27 E-value=5.9 Score=49.72 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=39.0
Q ss_pred cccccccccCCCCeEecCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 000482 52 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 100 (1464)
Q Consensus 52 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 100 (1464)
+.+.|.+|.++|++++|+.|..++|-.|. ....|.+.|.|..|...
T Consensus 88 ~~~~c~vc~~ggs~v~~~s~~~~~~r~c~---~~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 88 EPSECFVCFKGGSLVTCKSRIQAPHRKCK---PAQLEKCSKRCTDCRAF 133 (463)
T ss_pred CcchhccccCCCccceeccccccccccCc---CccCcccccCCcceeee
Confidence 56889999999999999999999999995 45567888988888753
No 394
>CHL00095 clpC Clp protease ATP binding subunit
Probab=59.06 E-value=31 Score=46.87 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.9
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
...+.||.-+.|.|||..+-+++..+...
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45688999999999999998888776543
No 395
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=58.57 E-value=54 Score=39.44 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.8
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
..||.-+.|+|||..+.+++..+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35789999999999999988887643
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=58.56 E-value=19 Score=43.18 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=34.6
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 283 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 283 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
+..+.+.+.|..-+ ..+...+.+.|++-.+|+|||...-+++..+..
T Consensus 124 v~~g~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 124 VTSKIMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHcCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 33456777776554 444567788999999999999988777776643
No 397
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=58.33 E-value=3 Score=47.22 Aligned_cols=59 Identities=31% Similarity=0.613 Sum_probs=40.0
Q ss_pred cccccccccCC----------CCeEecCCCCCccccccCCCCC---CCCCCCCCCCCccCCC-----CCcccccccc
Q 000482 52 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVSP-----LNDIDKILDC 110 (1464)
Q Consensus 52 ~~~~C~~C~~~----------g~ll~Cd~C~~~~H~~Cl~P~l---~~~p~~~W~C~~C~~~-----~~didkiL~w 110 (1464)
...+|--|-.+ .+|+.|..|.|+=|.+||.-.. ..+-.-.|.|-+|..= ...-|.+|.|
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEee
Confidence 35567777543 3499999999999999994321 1234568999999741 1223677766
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.24 E-value=48 Score=41.22 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.5
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q 000482 309 VILADEMGLGKTIQSIAFLASL 330 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l 330 (1464)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5577899999999998888755
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=58.04 E-value=49 Score=41.41 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=25.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
.++.-..|.|||.++.-++.++......++++|+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 46788999999999999998887662234444443
No 400
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=57.99 E-value=40 Score=42.45 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 292 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 292 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
|...+.+|......+ ...|+.-+.|.|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 445566665555544 235788999999999999999988654
No 401
>PRK06835 DNA replication protein DnaC; Validated
Probab=57.54 E-value=23 Score=42.62 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHHHH----HhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 286 GSLHPYQLEGLNFLR----FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~----~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
+..+.++..++.++. ..-..+.+.+|.-.+|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 456667666666443 2222457788999999999999999999887654
No 402
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=57.43 E-value=18 Score=47.91 Aligned_cols=52 Identities=21% Similarity=0.175 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CC--CcEEEEEcc
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL 344 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~--~p~LIVvP~ 344 (1464)
.|.|-|.++|.+ ..+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT 56 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 56 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEech
Confidence 478899999863 35667777889999999999999999864 43 368888884
No 403
>PRK14873 primosome assembly protein PriA; Provisional
Probab=57.41 E-value=43 Score=44.23 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHhhc-C-CeEEEEEcCCCHHHHHHHHHHHhccCCCceEEEee
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 685 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~~~-g-~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfLlS 685 (1464)
.|||......++......|+.+||...-+.....+...|..+ | ..+..+++..+..+|.+...+...+.. .++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~---~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA---RVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC---cEEEE
Confidence 689999999999999999999999999999888888888654 3 679999999999999988877765433 36888
Q ss_pred ccccccccCccCCCEEEEec
Q 000482 686 TRAGGLGINLATADTVIIYD 705 (1464)
Q Consensus 686 TrAgg~GINL~~Ad~VIi~D 705 (1464)
||++-. +=+..-..||+-|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 887431 2223334555543
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=56.98 E-value=57 Score=43.75 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.1
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
...+.||.-+.|.|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999988888877554
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.56 E-value=45 Score=41.68 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=25.6
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 308 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
-.+++-..|.|||.++.-++.++......++++|.-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 356889999999999999988876332234444443
No 406
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=56.46 E-value=51 Score=43.37 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHH----HHHHhhcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEE
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLL----EDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 683 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL----~~~L~~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfL 683 (1464)
.|||.....-.+......|.+++|.+.....+.-+ ..++...|+++..++|+++..+|...++...++... ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 57887654433333445688999999887665544 444555589999999999999999999888765444 56
Q ss_pred eeccc-cccccCccCCCEEEEecCC
Q 000482 684 LSTRA-GGLGINLATADTVIIYDSD 707 (1464)
Q Consensus 684 lSTrA-gg~GINL~~Ad~VIi~D~d 707 (1464)
++|.+ .-..+.+.....||+=+-+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 66655 3445677777777765543
No 407
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=56.42 E-value=36 Score=46.40 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHhhc--cCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 295 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 295 gvnwL~~~~~--~~~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
-+..++..+. ...+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4666655443 3568899999999999998888877654
No 408
>PRK05973 replicative DNA helicase; Provisional
Probab=56.04 E-value=29 Score=39.92 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 299 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 299 L~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
+...+..+.-.+|+-..|+|||+-++-|+...... ..+++++.-...-.+-.+.+..
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHH
Confidence 33445677778999999999999999998877544 3478888765555554444443
No 409
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=55.96 E-value=80 Score=43.97 Aligned_cols=58 Identities=14% Similarity=-0.022 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
..|.+-|.+++..+. ..++-++|.-.-|+|||.+.-++...+.. ....++.++|...-
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~-~G~~V~g~ApTgkA 437 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEA-AGYRVVGGALAGKA 437 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEcCcHHH
Confidence 579999999997652 34556788899999999876665544433 23477888886543
No 410
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=55.47 E-value=42 Score=44.39 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEc-cccHHHHHHHHHHHC
Q 000482 288 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAP-LSTLRNWEREFATWA 358 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~--p~LIVvP-~sll~qW~~E~~k~~ 358 (1464)
|.|-|..+|+ ...+.+++-...|+|||.+.+.-+.++... +.. .+|+|+. .....+-++.+.+..
T Consensus 2 Ln~~Q~~av~------~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVE------YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 7789999886 345678888899999999999999998864 333 5777766 455566666676654
No 411
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=55.42 E-value=1.3 Score=40.92 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=18.6
Q ss_pred cccccccCC----CC--eEecC--CCCCccccccCCCCCCCCCC-------CCCCCCccCC
Q 000482 54 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPPS-------GSWRCPECVS 99 (1464)
Q Consensus 54 ~~C~~C~~~----g~--ll~Cd--~C~~~~H~~Cl~P~l~~~p~-------~~W~C~~C~~ 99 (1464)
..|.+|... +. .+.|+ .|...||..||---+...+. -.+.||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 458888642 22 57898 89999999999544332111 2246999975
No 412
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=55.02 E-value=8.1 Score=43.20 Aligned_cols=39 Identities=26% Similarity=0.842 Sum_probs=30.5
Q ss_pred cccccccccCCC--------CeEecCCCCCccccccCCCCCCCCCCCCCCCCccCC
Q 000482 52 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 99 (1464)
Q Consensus 52 ~~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 99 (1464)
..-+|.+|+.++ ....|..|...||..|... . .||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHh
Confidence 456789998653 3789999999999999852 1 2999974
No 413
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=54.88 E-value=1.2e+02 Score=34.25 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=25.1
Q ss_pred ceeEEEeccccccCCcch---HHHHHHHhc-ccccEEeecc
Q 000482 430 KWQCMIVDEGHRLKNKDS---KLFSSLKQY-STRHRVLLTG 466 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~S---k~~~al~~l-~~~~rLLLTG 466 (1464)
..++||||..|.+.+... .++..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 467899999999988643 344444444 3455777776
No 414
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=54.87 E-value=33 Score=44.75 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=66.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-----CCcEEEEEc-cccHHHHHHHHHHHCC
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAP 359 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~-----~~p~LIVvP-~sll~qW~~E~~k~~P 359 (1464)
..|..-|+.+...+ ....-.|+.-..|+|||.+++-++..|+... .-|+||||= ++.+.|...-+-.+
T Consensus 377 ~ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~-- 450 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH-- 450 (1025)
T ss_pred eeecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--
Confidence 35777899987665 3445578899999999999998888887653 239999998 58888876665542
Q ss_pred CCeEEEEEcChhHHHHHHHhhhc
Q 000482 360 QMNVVMYVGTSQARNIIREYEFY 382 (1464)
Q Consensus 360 ~l~vvvy~G~~~~R~~i~~~e~~ 382 (1464)
+-..++..|+......++.+.+.
T Consensus 451 qrpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 451 QRPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CCceEEEeccccCCHHHHHHHHH
Confidence 34567778877666666665544
No 415
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=54.67 E-value=53 Score=35.97 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=23.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000482 310 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 344 (1464)
Q Consensus 310 ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~ 344 (1464)
++.-.|++|||...|..+..+...+ .++|++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~-~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG-KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 4567999999998887776654432 367777663
No 416
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=54.63 E-value=5.5 Score=35.47 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.6
Q ss_pred cchhhhhhhccCCCCceEEEEEeccc
Q 000482 194 TTVDRILACRGEDDEKEYLVKYKELS 219 (1464)
Q Consensus 194 ~~veRII~~r~~~~~~eyLVKWkgL~ 219 (1464)
+.+|+||+.-...|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 46788888877779999999999976
No 417
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=54.44 E-value=22 Score=45.77 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 330 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l 330 (1464)
.++++-|++-.+-++.....|+=||+-..+|+|||+..|.....+
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltW 58 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTW 58 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHH
Confidence 678999999999999999999999999999999999876554443
No 418
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=54.31 E-value=9.9 Score=43.62 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=38.7
Q ss_pred ccCHHHHHHHHHHHHhhcccchHHhhhCcccChHHHHHHHhcCCCCCCCCCC
Q 000482 1085 FWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPG 1136 (1464)
Q Consensus 1085 ~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~ 1136 (1464)
.|+.|||..|...|-+||-|+|-.|-.+-.|+ +.-+--++|..|-+-|.
T Consensus 11 pWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~---R~GKSCRlRW~NyLrP~ 59 (238)
T KOG0048|consen 11 PWTQEEDLTQIRSIKSFGKHNGTALPKLAGLR---RCGKSCRLRWTNYLRPD 59 (238)
T ss_pred CCChHHHHHHHHHHHHhCCCCcchhhhhcCCC---ccchHHHHHhhcccCCC
Confidence 79999999999999999999999988887653 33344456777766664
No 419
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=53.89 E-value=32 Score=45.89 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CC--CcEEEEEcc-ccHHHHHHHHHHHCC
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWAP 359 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~--~p~LIVvP~-sll~qW~~E~~k~~P 359 (1464)
.|-|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+-+ .....-..-+.+..+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 48899999986 345678888899999999999999999864 33 378888884 444555555655543
No 420
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.75 E-value=35 Score=42.20 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCch
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 388 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~ 388 (1464)
.+++-=.|+|||.++.-++.++.. ....+|+|+--.--+--...++..+-...|-+|.-.....-.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv------------- 168 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPV------------- 168 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHH-------------
Q ss_pred hhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccCCcchHHHHHHHhcc
Q 000482 389 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 457 (1464)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~ 457 (1464)
+++..-...++.-.+++||||=|-|+.- +..+...+..++
T Consensus 169 ----------------------------~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik 208 (451)
T COG0541 169 ----------------------------EIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEIK 208 (451)
T ss_pred ----------------------------HHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHHH
No 421
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.39 E-value=1.2e+02 Score=37.91 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=24.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
..|.--.|.|||.++..++.++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 457778999999999888887765543 5555544
No 422
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=52.98 E-value=15 Score=42.98 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=18.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHH
Q 000482 307 THVILADEMGLGKTIQSIAFLASL 330 (1464)
Q Consensus 307 ~~~ILADemGLGKTiqaIa~l~~l 330 (1464)
.+++|.-..|||||..|--++..+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 468999999999997665555444
No 423
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=52.93 E-value=33 Score=39.89 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEE
Q 000482 290 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 342 (1464)
Q Consensus 290 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVv 342 (1464)
|+...-+..+......+...+|..+.|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 44555555566666788899999999999999988877643 23777664
No 424
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=52.90 E-value=28 Score=46.59 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.4
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
...+.||.-+.|+|||..+-++...+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46788999999999999988777665443
No 425
>CHL00206 ycf2 Ycf2; Provisional
Probab=52.81 E-value=33 Score=49.49 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.6
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 350 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW 350 (1464)
...+|++|.-.+|+|||+.|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 446688899999999999887777642 2388888777777665
No 426
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=52.35 E-value=1.5e+02 Score=36.76 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=33.4
Q ss_pred eeEEEeccccc-cCCcc-hHHHHHHHhc--ccccEEeecccccCCCHHHHHHHHHhhcCCC
Q 000482 431 WQCMIVDEGHR-LKNKD-SKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 487 (1464)
Q Consensus 431 w~~VIvDEAHr-lKN~~-Sk~~~al~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~ 487 (1464)
.++|.||=+-| -++.. ..-..++... .....|.||+|-=.+.+.+++..+..+...-
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 37888885543 22211 1111222222 2345689999988888888888777766543
No 427
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=51.65 E-value=82 Score=37.96 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHhhccCCc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 288 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
++|+|...-.-+...+.+-.+ .++.-..|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 467777776556554444444 5688999999999999999988753
No 428
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=51.34 E-value=26 Score=46.87 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEcc
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL 344 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~--p~LIVvP~ 344 (1464)
.|-|-|.++|. ...+..++-...|+|||.+.+.-+.+|... +.. .+|+|+-+
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT 63 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFT 63 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeecc
Confidence 48899999986 335677788889999999999999999863 433 58888874
No 429
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=50.97 E-value=67 Score=38.52 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhCC
Q 000482 292 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 292 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
|-+++..|......+ ..-++.-+.|.||+..|.+++..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 555666666666555 3567888999999999999999987653
No 430
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=50.66 E-value=23 Score=35.53 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhhccchhhhhhhccCCchhhHHHhhhhhHHHHHHHhhhh
Q 000482 1287 AQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQI 1335 (1464)
Q Consensus 1287 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1335 (1464)
--.|++|.-+|+.=..|+.|.=-||+.|+.+.|+....||-|..|++..
T Consensus 3 Kdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaKefRKe 51 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAKEFRKE 51 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999873
No 431
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=50.65 E-value=7.7 Score=37.18 Aligned_cols=30 Identities=20% Similarity=0.714 Sum_probs=26.1
Q ss_pred cccccccccCC-CCeEecC--CCCCccccccCC
Q 000482 52 KDDSCQACGES-ENLMSCD--TCTYAYHAKCLV 81 (1464)
Q Consensus 52 ~~~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~ 81 (1464)
....|..|+.. |-.+.|. +|.+.||+.|..
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 45689999998 8899997 699999999974
No 432
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=50.48 E-value=30 Score=41.07 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
+.+-+.|. .+|......+++.+++-.+|+|||..+-+++..+..
T Consensus 115 g~~~~~~~---~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQR---DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHH---HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444444 345555567889999999999999988777776644
No 433
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.09 E-value=1.4e+02 Score=39.17 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q 000482 309 VILADEMGLGKTIQSIAFLASLFG 332 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~ 332 (1464)
.|+.-+.|.|||..|..++..+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999988888887753
No 434
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=49.37 E-value=27 Score=40.57 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=28.6
Q ss_pred HHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 297 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 297 nwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.+|......+++.+++-++|+|||.+.-+++.++-..
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 4455555668899999999999999988887765444
No 435
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.26 E-value=1.1e+02 Score=38.95 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=28.7
Q ss_pred hhhcccCCCceeEEEeccccccCCcchHHHHHHHhcc---cccEEeecccc
Q 000482 421 LDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTP 468 (1464)
Q Consensus 421 ~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~---~~~rLLLTGTP 468 (1464)
.+...+......++|+||+|..++. .++.++..-. .+..++...|+
T Consensus 114 ~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 114 SDADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred cCCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhccCCCceEEEEeCC
Confidence 3455666778899999999999863 3455554432 23344444454
No 436
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.14 E-value=59 Score=38.28 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEc
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 343 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIVvP 343 (1464)
+...+|.-.+|.|||.++..++.++... +..++.||.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4456678899999999999888887654 3345555544
No 437
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=49.12 E-value=52 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=23.4
Q ss_pred eeEEEeccccccCCcchHHHHHHHhccc--ccEEeeccc
Q 000482 431 WQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGT 467 (1464)
Q Consensus 431 w~~VIvDEAHrlKN~~Sk~~~al~~l~~--~~rLLLTGT 467 (1464)
.++|+|||||-+.. .+...|..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998754 45555666644 456666664
No 438
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=48.11 E-value=30 Score=38.90 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=40.2
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHC
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 358 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~~ 358 (1464)
-.+.-.+|+-+.|+|||+.++.|+.........+++.|+-.....++.+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 3456678999999999999999987665541238888888777788888877654
No 439
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=48.09 E-value=27 Score=43.01 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=22.6
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 303 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 303 ~~~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.-.|.+++|...-|.|||..+-.+...+...
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 3567778888899999998776666555443
No 440
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=47.61 E-value=9.3 Score=38.18 Aligned_cols=30 Identities=30% Similarity=0.785 Sum_probs=25.5
Q ss_pred cccccccccCC-CCeEecCC--CCCccccccCC
Q 000482 52 KDDSCQACGES-ENLMSCDT--CTYAYHAKCLV 81 (1464)
Q Consensus 52 ~~~~C~~C~~~-g~ll~Cd~--C~~~~H~~Cl~ 81 (1464)
....|.+|+.. |-.+.|.. |...||..|..
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 35689999984 77999987 99999999973
No 441
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=47.49 E-value=1e+02 Score=37.81 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHhhcc---CCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 288 LHPYQLEGLNFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 288 LrpyQlegvnwL~~~~~~---~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
-|+-|++.+......+-. ..+.++.-.+|+|||.++--++..+...
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 578888887544332222 3468899999999999988888877665
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.16 E-value=87 Score=39.77 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEE
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVV 341 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~-~~~p~LIV 341 (1464)
..|.-..|.|||.++.-++..+... +...+.+|
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4477799999999988777766433 32344433
No 443
>smart00300 ChSh Chromo Shadow Domain.
Probab=47.05 E-value=15 Score=33.13 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.1
Q ss_pred cchhhhhhhccCCCCceEEEEEec
Q 000482 194 TTVDRILACRGEDDEKEYLVKYKE 217 (1464)
Q Consensus 194 ~~veRII~~r~~~~~~eyLVKWkg 217 (1464)
..+++|+.....++...||+||++
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~ 30 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD 30 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC
Confidence 467899888878899999999999
No 444
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=46.74 E-value=1.7e+02 Score=35.28 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEE
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 342 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVv 342 (1464)
..|.-..|.|||.++..++..+...+ +.++|+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 44667999999999888888776543 3555554
No 445
>PF12846 AAA_10: AAA-like domain
Probab=46.03 E-value=54 Score=37.94 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 351 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~ 351 (1464)
+.++++.-.+|+|||..+..++..+...+ .+++|+=|..-...|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~~ 45 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPLA 45 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHHH
Confidence 35788899999999998887777776654 3666665654444433
No 446
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.75 E-value=76 Score=38.80 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=34.5
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
.-+++++.-..|+|||+.|=|++-.. ...|.=|.-..+...|+-|=++.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 34678999999999999887766643 12455555566668888775553
No 447
>PRK09183 transposase/IS protein; Provisional
Probab=45.61 E-value=57 Score=37.94 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 292 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 292 QlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
++.++.|+ ..+.+.+|.-+.|+|||..+.++...+...+ ..++.+....++
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~~~~l~ 142 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTTAADLL 142 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEeHHHHH
Confidence 34444554 6788899999999999999888876655433 255555433443
No 448
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=45.29 E-value=1.4e+02 Score=35.13 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEE
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 342 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVv 342 (1464)
.++.-..|.|||.++..++.++...+ .++++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 44667999999999988888776543 3555554
No 449
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=45.08 E-value=50 Score=42.03 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhcCCCccchhhhchhhcCCCHHHHH-HHHHHHHHhhhhccCCCCCccCCCCcCccchhHHHHHHHH
Q 000482 971 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR-EYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAV 1049 (1464)
Q Consensus 971 F~~w~Rr~Fv~a~~kyG~~~~~~~~ia~el~~Ks~eEvk-~Ya~lF~~~~~E~i~d~~~~~d~i~k~~~k~~~vl~Ri~~ 1049 (1464)
|++.+=...+.|+.+|| ..+|-.+-.++.+.|...++ +|..++..+.+-
T Consensus 363 wt~~ED~~L~~AV~~Yg--~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~---------------------------- 412 (939)
T KOG0049|consen 363 WTDQEDVLLVCAVSRYG--AKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKV---------------------------- 412 (939)
T ss_pred CCCHHHHHHHHHHHHhC--ccchhhHHHhcCCccHHHHHHHHHHHHHHhhcc----------------------------
Q ss_pred HHHHHHHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHHHHHhhcccchHHh
Q 000482 1050 LLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAI 1109 (1464)
Q Consensus 1050 ~~ll~~Kv~~~~~~p~~~~~~~~~~~~y~~~~~~~~w~~eeDr~LL~~i~k~Gyg~We~I 1109 (1464)
..|+.-||-.||..|-+||-|+|-+|
T Consensus 413 ----------------------------------~rW~l~edeqL~~~V~~YG~g~Wakc 438 (939)
T KOG0049|consen 413 ----------------------------------ERWTLVEDEQLLYAVKVYGKGNWAKC 438 (939)
T ss_pred ----------------------------------CceeecchHHHHHHHHHHccchHHHH
No 450
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.07 E-value=1.3e+02 Score=37.53 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=29.7
Q ss_pred ceeEEEeccccccCCcchHHHHHHHhcc-----cccEEeecccccCCCHHHHHHHHHhh
Q 000482 430 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFL 483 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~Sk~~~al~~l~-----~~~rLLLTGTPlqNnl~EL~sLL~fL 483 (1464)
.++.++||.+=+..+. ..+...+..+. ....|.|++|--.+.+.++...+..+
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~ 326 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGH 326 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCC
Confidence 3567888886443322 23344444442 23457799996666666665554443
No 451
>PRK12377 putative replication protein; Provisional
Probab=44.90 E-value=1e+02 Score=35.67 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 349 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~q 349 (1464)
..+.+|.-..|+|||..+.+++..+...+. .++++.-..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHH
Confidence 356788999999999999999999876543 4554444455543
No 452
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.88 E-value=1e+02 Score=37.05 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=34.0
Q ss_pred CcEE-EEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEE
Q 000482 307 THVI-LADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 367 (1464)
Q Consensus 307 ~~~I-LADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~ 367 (1464)
..+| +.---|.|||.+..=++.++...+ .++|+.+--.--.-=...++-|.-.+.+-++.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g-~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQG-KSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS 199 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhCCeEEc
Confidence 3444 466789999987666666665543 35555554333333455566676444444433
No 453
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=44.84 E-value=83 Score=36.46 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=19.0
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLAS 329 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~ 329 (1464)
..|..++|.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 57788888889999999654443333
No 454
>PRK06921 hypothetical protein; Provisional
Probab=44.81 E-value=78 Score=36.99 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=29.0
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 343 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP 343 (1464)
.+.+.+|.-++|+|||..+.+++..+.......++.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 366788999999999999999998887652224444443
No 455
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=44.72 E-value=12 Score=31.97 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=18.0
Q ss_pred hhhhhc-cCCCCceEEEEEeccc
Q 000482 198 RILACR-GEDDEKEYLVKYKELS 219 (1464)
Q Consensus 198 RII~~r-~~~~~~eyLVKWkgL~ 219 (1464)
+|++.| ..++..+|||-|.|.+
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 778877 5678899999998864
No 456
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.67 E-value=53 Score=39.95 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=36.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEE
Q 000482 310 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 367 (1464)
Q Consensus 310 ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~ 367 (1464)
++.-=-|.|||.+..-+++|+.+.+.++.||.+..- -.--.+.++.|+....+-+|.
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTF-RAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccc-ccchHHHHHHHhHhhCCeeEe
Confidence 456678999999988888888887776777666532 122234455555444554443
No 457
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=44.65 E-value=93 Score=38.56 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.8
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000482 303 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 303 ~~~~~~~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
...|..+.|..+.|.|||..+-.++..+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 3567788889999999998766655554433
No 458
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.62 E-value=26 Score=42.35 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=33.9
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
....|.+|....|+|||..|-++.... ..+|+=|-=..+...|..|-++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHH
Confidence 477889999999999999887766542 22444444455556776665543
No 459
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=44.34 E-value=51 Score=41.58 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=38.2
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHH
Confidence 4455678999999999999998888775543 478888877666665544443
No 460
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.30 E-value=59 Score=45.41 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=30.1
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEccc
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 345 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~--p~LIVvP~s 345 (1464)
+..+.+++-.+|+|||...-++|..+... ... .+++|=|+.
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 34688999999999999988888776543 222 566666664
No 461
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=43.96 E-value=1e+02 Score=42.32 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHh----hcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEE
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 683 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~----~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfL 683 (1464)
.+||.......+-.....|.+++|.+..+..+......+. ..++++..++|.++..++.+++..+..+... ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 4777765444333344568899999999887766555443 3477888999999999999999988764333 56
Q ss_pred eeccc-cccccCccCCCEEEEec
Q 000482 684 LSTRA-GGLGINLATADTVIIYD 705 (1464)
Q Consensus 684 lSTrA-gg~GINL~~Ad~VIi~D 705 (1464)
++|.. ....+.+.....||+=+
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeec
Confidence 66553 44556777777776644
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=43.68 E-value=43 Score=39.09 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 331 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~ 331 (1464)
.+.+.|.+.+.++.. ..++.++++-++|+|||.+.-+++.++.
T Consensus 63 g~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 367788888766532 3445578999999999999888887764
No 463
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=43.39 E-value=1.3e+02 Score=36.21 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=65.9
Q ss_pred CCchHHHHHHHHHHHHhCCC---------C-----cEEEEEccccHHHHHHH---HHHHCCCCeEEEEEcChhHHHHHHH
Q 000482 316 GLGKTIQSIAFLASLFGERI---------S-----PHLVVAPLSTLRNWERE---FATWAPQMNVVMYVGTSQARNIIRE 378 (1464)
Q Consensus 316 GLGKTiqaIa~l~~l~~~~~---------~-----p~LIVvP~sll~qW~~E---~~k~~P~l~vvvy~G~~~~R~~i~~ 378 (1464)
|+|||=.++.++.+|...+. + ..++|.|.+.-..--+| +.+.+| +.++.|....+....-
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~---~~V~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP---VPVIVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC---CcEEEeCcHHHHHHHH
Confidence 89999999999999976531 1 27888888755555455 455566 4444554433322111
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccccccCCc----chHHHHHHH
Q 000482 379 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLK 454 (1464)
Q Consensus 379 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~----~Sk~~~al~ 454 (1464)
. ....++|+|.-=. +. +. .| .-+.++|++|-.+-+.|. ...+..-+.
T Consensus 124 ~-------------------------~~~~~dviilDDG-fQ-h~-~L-~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~ 174 (326)
T PF02606_consen 124 L-------------------------KEFPADVIILDDG-FQ-HR-RL-KRDLDIVLVDADRPFGNGFLLPAGPLREPLS 174 (326)
T ss_pred H-------------------------HHCCCCEEEEcCC-cc-cc-cc-cCCcEEEEEeCCCCCcCCccCCCCcccCChh
Confidence 0 0112566654211 00 00 01 125678888876666552 233333344
Q ss_pred hcccccEEeeccccc
Q 000482 455 QYSTRHRVLLTGTPL 469 (1464)
Q Consensus 455 ~l~~~~rLLLTGTPl 469 (1464)
.+.....+++|+.+.
T Consensus 175 ~l~rAD~vi~~~~~~ 189 (326)
T PF02606_consen 175 ALKRADAVIVTGCDA 189 (326)
T ss_pred HhCcccEEEEcCCCc
Confidence 455455566777763
No 464
>CHL00176 ftsH cell division protein; Validated
Probab=43.19 E-value=94 Score=40.95 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.5
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASL 330 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l 330 (1464)
..+++|.-+.|+|||..|=+++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887776543
No 465
>PRK08939 primosomal protein DnaI; Reviewed
Probab=43.17 E-value=37 Score=40.52 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=31.8
Q ss_pred HHHHHHHhhc--cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEE
Q 000482 295 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 341 (1464)
Q Consensus 295 gvnwL~~~~~--~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIV 341 (1464)
+..|+..... .+.|.+|.-.+|+|||..+.|++..+...+. +++++
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 3555532211 3557788999999999999999999876543 44444
No 466
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.11 E-value=61 Score=36.97 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=37.6
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
-.+...+++-+.|+|||+.++-|+...... ..+.|.|+-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 456667889999999999999988876533 2488888766655555555544
No 467
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=43.04 E-value=2.9 Score=34.65 Aligned_cols=40 Identities=30% Similarity=0.685 Sum_probs=26.4
Q ss_pred cccccccCC---C-CeEecCCCCCccccccCCCCCCCCCCCCCCCCccC
Q 000482 54 DSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 98 (1464)
Q Consensus 54 ~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 98 (1464)
+.|.+|... + .++... |.-.||..|+..-+... -.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 358888753 3 355555 99999999997665442 2788883
No 468
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=42.97 E-value=12 Score=32.86 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=20.3
Q ss_pred hhhhhhhccCC-CCceEEEEEeccccccccccc
Q 000482 196 VDRILACRGED-DEKEYLVKYKELSYDECYWEY 227 (1464)
Q Consensus 196 veRII~~r~~~-~~~eyLVKWkgL~Y~~~TWE~ 227 (1464)
+++|+.....+ |+..||+||++ + +..+-+
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~-~--~~~lVp 31 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD-G--QASLVP 31 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC-C--eEEEEE
Confidence 56777666545 88999999999 4 444433
No 469
>PRK08760 replicative DNA helicase; Provisional
Probab=42.37 E-value=67 Score=40.78 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=46.6
Q ss_pred HHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000482 295 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 295 gvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
.++-+...+..+.=.|||..+|.|||.-++.++.........|++++..-....+|...+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 344444456677778999999999999999998876533334899998888788887766443
No 470
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=42.16 E-value=7.7e+02 Score=30.60 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHHHhhcc--CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcccc---HHHHHHHHHHHCCCC
Q 000482 287 SLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST---LRNWEREFATWAPQM 361 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sl---l~qW~~E~~k~~P~l 361 (1464)
-.|.+|+..+.-++..-.. ...++|.-..|+|||..+-.++..+ .-|+.-|.+... -.-|..-+.+-.
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~--- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQ--- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhc---
Confidence 4688999988766433222 1234788999999999888777765 225666666422 233444444331
Q ss_pred eEEEEEcChhHH--HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCceeEEEeccc
Q 000482 362 NVVMYVGTSQAR--NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 439 (1464)
Q Consensus 362 ~vvvy~G~~~~R--~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIvDEA 439 (1464)
..-+.|....- ..+ ..|.-.+..|+...+. -.--++|+|-|
T Consensus 82 -~~d~dg~~~~~~~en~------------------------------~d~i~~l~q~~~~t~~------d~~~~liLDna 124 (438)
T KOG2543|consen 82 -LADKDGDKVEGDAENF------------------------------SDFIYLLVQWPAATNR------DQKVFLILDNA 124 (438)
T ss_pred -cCCCchhhhhhHHHHH------------------------------HHHHHHHHhhHHhhcc------CceEEEEEcCH
Confidence 00111111000 000 0111111111111111 12237999999
Q ss_pred cccCCcchHHHHHHHhcc-----cccEEeecccccCC
Q 000482 440 HRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQN 471 (1464)
Q Consensus 440 HrlKN~~Sk~~~al~~l~-----~~~rLLLTGTPlqN 471 (1464)
..+....+.+.+.+..+. ..-+++++.++..+
T Consensus 125 d~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 125 DALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 999988888887777653 34567788777443
No 471
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=41.76 E-value=35 Score=38.65 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=33.1
Q ss_pred HhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000482 301 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 344 (1464)
Q Consensus 301 ~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~ 344 (1464)
..+..|.-.+|+-..|.|||..++.++..+......++|++...
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 34456667889999999999999988887765533477777653
No 472
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=41.69 E-value=37 Score=41.34 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=28.0
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccc
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 345 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~s 345 (1464)
.|+..+|+.+.|+|||..|+++...|-.. -||..++-.-
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSE 87 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSE 87 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEcccce
Confidence 46677899999999999999998887422 2888877643
No 473
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.49 E-value=38 Score=42.01 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.4
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 306 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 306 ~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
-++.+|+-+.|.|||..+.+++.... ..|-=|.|.++..-|.-|-++
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~----atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESG----ATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhc----ceEeeccHHHhhhhccChHHH
Confidence 34668999999999998888877542 367778888998888776654
No 474
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.36 E-value=1.3e+02 Score=40.24 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=23.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHH-hCCCCcEEEEEc
Q 000482 308 HVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAP 343 (1464)
Q Consensus 308 ~~ILADemGLGKTiqaIa~l~~l~-~~~~~p~LIVvP 343 (1464)
-..|.-..|.|||.++.-++..+. ..+...+.+|.-
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 345888999999988777766653 333334544443
No 475
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=41.01 E-value=53 Score=39.48 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 331 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~ 331 (1464)
+.+.+.|.+.+ ......+.+.+++-.+|+|||...-+++..+.
T Consensus 131 g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 131 GIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 45666666544 44456788999999999999977767766553
No 476
>PRK05748 replicative DNA helicase; Provisional
Probab=40.45 E-value=62 Score=40.72 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=43.6
Q ss_pred HHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000482 294 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 354 (1464)
Q Consensus 294 egvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~ 354 (1464)
.+++-+...+..+.-.||+..+|.|||.-++.++.........+++++..--.-.+....+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 3455554556777778999999999999999998876543334888887766666654444
No 477
>PRK13766 Hef nuclease; Provisional
Probab=40.39 E-value=4.4e+02 Score=35.59 Aligned_cols=93 Identities=14% Similarity=0.250 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHH-HHhcCceEEEEecchhhHHHHHHHHh----hcCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEE
Q 000482 608 SSGKLQLLDKMMVK-LKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 682 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~-l~~~g~KVLIFSq~~~~LdiL~~~L~----~~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vf 682 (1464)
.+||.....-++.. +...+.++||.+.......-....+. ..+.++..++|.++..+|..+... .. ++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~--ii 111 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AK--VI 111 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CC--EE
Confidence 47887643333332 33467899999998766644444443 333478889999998887655431 12 34
Q ss_pred Eeecccc-----ccccCccCCCEEEEecCC
Q 000482 683 LLSTRAG-----GLGINLATADTVIIYDSD 707 (1464)
Q Consensus 683 LlSTrAg-----g~GINL~~Ad~VIi~D~d 707 (1464)
+++.+.. ..-+++...+.||+-+-+
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 4444332 223556677777776554
No 478
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=39.79 E-value=16 Score=31.57 Aligned_cols=34 Identities=32% Similarity=0.833 Sum_probs=20.3
Q ss_pred ecCCCCCccccccCCC--------CCCCCCCCCCCCCccCCCC
Q 000482 67 SCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSPL 101 (1464)
Q Consensus 67 ~Cd~C~~~~H~~Cl~P--------~l~~~p~~~W~C~~C~~~~ 101 (1464)
.|..|...|+..=-+| +..+.| .+|.||.|..+.
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp-~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDLP-DDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHCC-CCCCCCCCCCcH
Confidence 4777777776542222 112233 589999997644
No 479
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=39.60 E-value=74 Score=35.75 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=39.1
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 357 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k~ 357 (1464)
.+.-.+|+-+.|+|||..++.++...... ..+++.|.-.....+-.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc
Confidence 45556789999999999999888776544 34888888877777666666554
No 480
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=39.11 E-value=1.1e+02 Score=37.80 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=24.0
Q ss_pred EEEEecCCCchHHHHHHHHH-HHHhC-CCCcEEEEEcc
Q 000482 309 VILADEMGLGKTIQSIAFLA-SLFGE-RISPHLVVAPL 344 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~-~l~~~-~~~p~LIVvP~ 344 (1464)
.|+.-.-|+|||..++..+. .+... ....+||+-|.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~ 41 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKV 41 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 45666789999988765444 44443 34578888783
No 481
>PHA00012 I assembly protein
Probab=38.97 E-value=71 Score=38.39 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCC
Q 000482 310 ILADEMGLGKTIQSIAFLASLFGER 334 (1464)
Q Consensus 310 ILADemGLGKTiqaIa~l~~l~~~~ 334 (1464)
++.--.|.|||+.|++-+...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4556789999999998776666654
No 482
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=38.91 E-value=40 Score=36.66 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=39.3
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC---------CCCcEEEEEccccHHHHHHHHHHHC
Q 000482 305 KQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATWA 358 (1464)
Q Consensus 305 ~~~~~ILADemGLGKTiqaIa~l~~l~~~---------~~~p~LIVvP~sll~qW~~E~~k~~ 358 (1464)
.+.-++++-..|.|||..++.++..+... ...++|+|..-....++.+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 46668999999999999999998887652 2348888888777777777776655
No 483
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=38.86 E-value=1.7e+02 Score=42.43 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH---hCCCCcEEEEEccccH
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 347 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~---~~~~~p~LIVvP~sll 347 (1464)
.|-+-|.+++..+.. ...+-++|.-..|+|||.+.-+++..+. ......++.++|..--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999976532 2456688999999999988655544432 2222367778886544
No 484
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=38.81 E-value=23 Score=41.13 Aligned_cols=36 Identities=31% Similarity=0.649 Sum_probs=29.8
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHhhcccchHHhhhCc
Q 000482 1076 RYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1113 (1464)
Q Consensus 1076 ~y~~~~~~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~ 1113 (1464)
.||- ....|+.+|+..|+-++-..|+|+|+.|-+=.
T Consensus 58 sypI--~~e~WgadEEllli~~~~TlGlGNW~dIadyi 93 (432)
T COG5114 58 SYPI--GEEGWGADEELLLIECLDTLGLGNWEDIADYI 93 (432)
T ss_pred Cccc--cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4543 35689999999999999999999999886543
No 485
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=38.68 E-value=86 Score=35.28 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=35.8
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHH
Q 000482 303 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 355 (1464)
Q Consensus 303 ~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 355 (1464)
+..+...+|+-+.|+|||..+..++...... ..+++.|.-.....+..+...
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~~ 68 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQAA 68 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHH
Confidence 3556677899999999999998888765543 237777776555554444433
No 486
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.44 E-value=96 Score=32.52 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000482 1193 DMQRRQVEFIKKRVLLLEKGLNAEYQKEY 1221 (1464)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1221 (1464)
.-|+++-+.+.+||+.||.||.-|.++-.
T Consensus 42 r~~e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 42 RGQENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667899999999999999988543
No 487
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=38.26 E-value=51 Score=44.10 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEcc
Q 000482 287 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL 344 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~-~~~--p~LIVvP~ 344 (1464)
.|-|-|..+|. ...+..++-...|+|||.+.+.-+.+|... +.. .+|+|+-+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVK------TTEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHh------CCCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 48899999986 335677888899999999999999999864 333 56777664
No 488
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=38.18 E-value=81 Score=35.94 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=36.6
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
..+.-.+|.-+.|+|||+.++.++..+...+ .+++.|+......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4566778999999999999988888776543 367777765554444444433
No 489
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=37.73 E-value=17 Score=42.56 Aligned_cols=50 Identities=22% Similarity=0.590 Sum_probs=30.3
Q ss_pred ccccccccccccCC--C---CeEecCCCCCcc--------ccccCCCCCCCCCC-CCCCCCccC
Q 000482 49 IDAKDDSCQACGES--E---NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECV 98 (1464)
Q Consensus 49 ~d~~~~~C~~C~~~--g---~ll~Cd~C~~~~--------H~~Cl~P~l~~~p~-~~W~C~~C~ 98 (1464)
.+..+..|.+||+. | -|+-|..|.-.| |+.|....-..+.. ..=.||.|.
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CR 74 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCR 74 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchh
Confidence 33456789999974 2 299999998765 55565433332321 123566664
No 490
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=37.73 E-value=49 Score=35.49 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHH-hhc---CCeEEEEEcCCCHHHHHHHHHHHhccCCCceEE
Q 000482 607 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 682 (1464)
Q Consensus 607 ~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L-~~~---g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vf 682 (1464)
..++++.++-+|+.+...+|.||+|.+.....+..|.+.| ... -++..+..+.. ..... +
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~-------------~a~~P---V 73 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ-------------PEKQP---I 73 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC-------------CCCCC---E
Confidence 4678999999999999999999999999999999999999 222 33333322211 01222 4
Q ss_pred EeeccccccccCccCCCEEEEecCCC
Q 000482 683 LLSTRAGGLGINLATADTVIIYDSDW 708 (1464)
Q Consensus 683 LlSTrAgg~GINL~~Ad~VIi~D~dW 708 (1464)
+|++ ++.+.| .++++|+++..+
T Consensus 74 ~L~~--~~~~p~--~~~vLiNL~~~~ 95 (154)
T PRK06646 74 YITD--ELQNPN--NASVLVIISPTD 95 (154)
T ss_pred EEec--CCCCCC--CCCEEEECCCcc
Confidence 5542 333444 778899998854
No 491
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=37.73 E-value=1.4e+02 Score=35.63 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000482 309 VILADEMGLGKTIQSIAFLASLFGE 333 (1464)
Q Consensus 309 ~ILADemGLGKTiqaIa~l~~l~~~ 333 (1464)
.++.-+-|.|||..|..++..+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999888654
No 492
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.60 E-value=3.8e+02 Score=33.09 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=48.0
Q ss_pred HhhhhHHHHHHHHHHHHHhcCceEEEEecch---hhHHHHHHHHhhcCCeEEE-EEcCCCHHHHHHHHHHHhccCC
Q 000482 606 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---HMLDLLEDYLTFKKWQYER-IDGKVGGAERQIRIDRFNAKNS 677 (1464)
Q Consensus 606 i~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~---~~LdiL~~~L~~~g~~~~r-idGs~s~~eRq~~Id~Fn~~~s 677 (1464)
++.+||...+-++...++.+|.|+.+.|--+ ...|.|...-...+++|.- ++..-+..--.+-+++|...+-
T Consensus 109 LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~f 184 (483)
T KOG0780|consen 109 LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENF 184 (483)
T ss_pred ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCC
Confidence 4567888888888888888888888877654 3456666655556666543 3444445556677888876443
No 493
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=37.52 E-value=36 Score=38.18 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=25.2
Q ss_pred ceeEEEeccccccCCcchHHHHHHHhcccccEEeecccccCCC
Q 000482 430 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 472 (1464)
Q Consensus 430 ~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNn 472 (1464)
..+.+||||++.+-... +.- +........+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~g~--l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY--LLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChHH--HHH-HHhhccCcceEEEECchhcc
Confidence 46789999999864322 112 33333334677779997754
No 494
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=37.31 E-value=10 Score=30.34 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=29.5
Q ss_pred cccccCCC-CeEecCCCCCccccccCCCCCCCCCCCCCCCCccCC
Q 000482 56 CQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 99 (1464)
Q Consensus 56 C~~C~~~g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 99 (1464)
|.+|...- +.+....|.-.||..|+..-+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 77787654 45555669999999999755443 4567999975
No 495
>PRK06904 replicative DNA helicase; Validated
Probab=37.21 E-value=87 Score=39.75 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=44.0
Q ss_pred HHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000482 295 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 354 (1464)
Q Consensus 295 gvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~ 354 (1464)
+++-+...|..+.=+|||.-+|.|||.-++.++.........|++++..-....++...+
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl 269 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM 269 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH
Confidence 454455566777788999999999999998887766433334899998877776665443
No 496
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=37.20 E-value=80 Score=36.45 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=39.3
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000482 304 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 356 (1464)
Q Consensus 304 ~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~qW~~E~~k 356 (1464)
-.+...++.-.+|+|||+-++-|+...... ..|+|.|+-...-..-.+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHH
Confidence 566778899999999999999999988776 2388888876555444444444
No 497
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=36.40 E-value=27 Score=38.32 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=18.8
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000482 310 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 344 (1464)
Q Consensus 310 ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~ 344 (1464)
||..+=|-|||...-..+..+...+..+++|.+|.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 35567899999765444444444444588999995
No 498
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=36.38 E-value=73 Score=38.93 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHHHhh--ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000482 287 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 347 (1464)
Q Consensus 287 ~LrpyQlegvnwL~~~~--~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll 347 (1464)
+|-+-|...+++++..+ ..+.+..|.-.-|+|||...=++...+.. ....+++++|..+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHH
Confidence 36678999988886555 45666788999999999987776666544 23488999997544
No 499
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=36.28 E-value=58 Score=34.37 Aligned_cols=82 Identities=21% Similarity=0.109 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHHHHhcCceEEEEecchhhHHHHHHHHh-h---cCCeEEEEEcCCCHHHHHHHHHHHhccCCCceEEE
Q 000482 608 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-F---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 683 (1464)
Q Consensus 608 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiL~~~L~-~---~g~~~~ridGs~s~~eRq~~Id~Fn~~~s~~~vfL 683 (1464)
...+..++-+|+.+...+|+||+|+|.....++.|.+.|= . .-++..+..+.. ....- ++
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---------------~~~~P-V~ 74 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP---------------AAGQP-VL 74 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC---------------CCCCC-EE
Confidence 4568899999999999999999999999999999999993 2 223333322211 11122 44
Q ss_pred eeccccccccCccCCCEEEEecCCC
Q 000482 684 LSTRAGGLGINLATADTVIIYDSDW 708 (1464)
Q Consensus 684 lSTrAgg~GINL~~Ad~VIi~D~dW 708 (1464)
|+. +..-+...++.+|+++..+
T Consensus 75 l~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 75 LTW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred EEc---CCCCCCCCCcEEEECCCCC
Confidence 441 1223666788899998864
No 500
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=36.20 E-value=1e+02 Score=35.55 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=43.1
Q ss_pred HHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEccccHHH-HHHHHHHH
Q 000482 295 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATW 357 (1464)
Q Consensus 295 gvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~l~~~~~~p~LIVvP~sll~q-W~~E~~k~ 357 (1464)
.++-+...+..+.=.+|+..+|.|||.-++.++..+......|+|++..-..-.+ +.+-+...
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~ 71 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARL 71 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Confidence 3444444556667789999999999999999998887664469999988644433 44444443
Done!